Query 036589
Match_columns 176
No_of_seqs 153 out of 1260
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:32:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 7.3E-33 1.6E-37 230.0 16.4 160 4-175 612-771 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 4.8E-33 1E-37 231.0 15.2 159 4-174 577-735 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 5.9E-33 1.3E-37 225.6 14.3 159 1-175 285-443 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.7E-30 3.7E-35 215.4 14.6 159 1-175 248-406 (857)
5 PLN03081 pentatricopeptide (PP 100.0 4.4E-30 9.6E-35 208.9 15.7 167 1-174 184-376 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.3E-29 2.9E-34 210.1 14.4 158 1-174 147-304 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 4.2E-17 9.2E-22 88.8 6.4 50 120-170 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 9.3E-17 2E-21 87.4 5.3 50 85-134 1-50 (50)
9 PRK11788 tetratricopeptide rep 99.4 7E-12 1.5E-16 96.0 15.1 154 8-175 109-266 (389)
10 KOG4422 Uncharacterized conser 99.4 2.5E-12 5.4E-17 96.5 11.0 118 50-173 206-327 (625)
11 PRK11788 tetratricopeptide rep 99.4 1.4E-11 3.1E-16 94.3 14.8 142 11-169 185-326 (389)
12 PF12854 PPR_1: PPR repeat 99.3 6E-12 1.3E-16 62.4 3.9 32 82-113 2-33 (34)
13 TIGR02917 PEP_TPR_lipo putativ 99.3 2.9E-10 6.2E-15 94.6 15.5 151 8-174 569-719 (899)
14 PF12854 PPR_1: PPR repeat 99.3 1.2E-11 2.6E-16 61.3 4.3 34 116-149 1-34 (34)
15 TIGR02917 PEP_TPR_lipo putativ 99.2 3.7E-10 8.1E-15 93.9 15.0 154 5-175 735-888 (899)
16 KOG4422 Uncharacterized conser 99.2 1.5E-10 3.3E-15 87.1 10.3 130 5-149 206-340 (625)
17 KOG4318 Bicoid mRNA stability 99.1 1.4E-09 3E-14 88.0 12.9 164 3-172 22-285 (1088)
18 TIGR02521 type_IV_pilW type IV 99.1 5.2E-09 1.1E-13 73.7 14.8 118 52-172 100-217 (234)
19 PF13429 TPR_15: Tetratricopep 99.1 6.2E-10 1.4E-14 81.8 9.3 157 4-175 108-265 (280)
20 TIGR02521 type_IV_pilW type IV 99.1 1.6E-08 3.5E-13 71.2 15.0 153 8-175 33-186 (234)
21 TIGR00990 3a0801s09 mitochondr 98.9 8.1E-08 1.8E-12 78.1 15.6 152 8-175 333-484 (615)
22 PF13429 TPR_15: Tetratricopep 98.9 4.8E-09 1E-13 77.1 7.8 152 6-174 78-230 (280)
23 PRK15174 Vi polysaccharide exp 98.9 1.1E-07 2.4E-12 77.7 16.3 153 7-175 111-263 (656)
24 TIGR00756 PPR pentatricopeptid 98.9 3.7E-09 8.1E-14 52.4 4.0 33 124-157 2-34 (35)
25 PRK12370 invasion protein regu 98.9 1.4E-07 3E-12 75.8 14.6 151 5-172 337-489 (553)
26 PRK15174 Vi polysaccharide exp 98.9 1.1E-07 2.3E-12 77.8 13.9 113 58-175 219-335 (656)
27 TIGR00990 3a0801s09 mitochondr 98.8 1.3E-07 2.9E-12 76.8 13.8 153 8-175 401-559 (615)
28 TIGR00756 PPR pentatricopeptid 98.8 4.1E-09 8.9E-14 52.3 3.2 33 89-121 2-34 (35)
29 PRK09782 bacteriophage N4 rece 98.8 3.2E-07 7E-12 77.7 14.9 107 63-175 588-694 (987)
30 PF13812 PPR_3: Pentatricopept 98.8 1.5E-08 3.1E-13 50.0 4.2 32 123-154 2-33 (34)
31 PF10037 MRP-S27: Mitochondria 98.8 2E-07 4.4E-12 71.7 12.1 125 46-171 61-186 (429)
32 PRK09782 bacteriophage N4 rece 98.8 5.7E-07 1.2E-11 76.2 15.2 145 13-175 516-660 (987)
33 PF13812 PPR_3: Pentatricopept 98.7 1.2E-08 2.6E-13 50.4 3.3 33 88-120 2-34 (34)
34 PRK12370 invasion protein regu 98.7 8.6E-07 1.9E-11 71.3 14.2 141 19-175 317-458 (553)
35 PF04733 Coatomer_E: Coatomer 98.7 3.9E-07 8.5E-12 67.3 10.7 137 14-173 110-250 (290)
36 PF01535 PPR: PPR repeat; Int 98.7 3.2E-08 7E-13 47.7 3.4 29 124-152 2-30 (31)
37 PF08579 RPM2: Mitochondrial r 98.7 8.2E-07 1.8E-11 55.4 10.1 81 53-134 27-116 (120)
38 PF01535 PPR: PPR repeat; Int 98.6 5.3E-08 1.2E-12 46.9 2.9 29 89-117 2-30 (31)
39 KOG1126 DNA-binding cell divis 98.6 3.1E-07 6.7E-12 72.5 8.4 168 2-175 417-608 (638)
40 PF08579 RPM2: Mitochondrial r 98.6 1.7E-06 3.6E-11 54.1 9.9 79 92-171 30-117 (120)
41 PRK15359 type III secretion sy 98.5 1E-05 2.2E-10 53.7 13.7 109 51-164 24-132 (144)
42 PRK11447 cellulose synthase su 98.5 1.1E-05 2.4E-10 70.2 16.5 146 11-174 578-727 (1157)
43 PRK10049 pgaA outer membrane p 98.5 1.5E-05 3.3E-10 66.5 15.9 147 10-173 19-165 (765)
44 KOG1129 TPR repeat-containing 98.5 3.1E-06 6.7E-11 62.4 10.3 148 11-175 228-375 (478)
45 KOG1840 Kinesin light chain [C 98.5 1.5E-06 3.2E-11 68.5 9.1 165 8-176 285-468 (508)
46 PRK11447 cellulose synthase su 98.5 1.2E-05 2.6E-10 70.0 15.5 146 10-175 465-654 (1157)
47 TIGR03302 OM_YfiO outer membra 98.5 1E-05 2.2E-10 57.9 12.8 158 8-175 35-220 (235)
48 KOG1155 Anaphase-promoting com 98.4 5.6E-06 1.2E-10 63.5 11.4 155 3-173 327-481 (559)
49 PF06239 ECSIT: Evolutionarily 98.4 5.2E-06 1.1E-10 57.9 9.8 84 52-137 48-153 (228)
50 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 8.2E-06 1.8E-10 62.6 11.7 122 11-149 174-295 (395)
51 KOG4626 O-linked N-acetylgluco 98.4 9.4E-06 2E-10 64.5 11.7 148 8-173 322-471 (966)
52 COG5010 TadD Flp pilus assembl 98.4 1.7E-05 3.8E-10 56.5 12.0 123 12-148 106-228 (257)
53 PRK10370 formate-dependent nit 98.4 2.3E-05 5E-10 54.8 12.6 116 48-169 70-188 (198)
54 PF04733 Coatomer_E: Coatomer 98.4 2E-05 4.3E-10 58.3 12.8 144 9-167 134-281 (290)
55 PF10037 MRP-S27: Mitochondria 98.3 2.4E-06 5.3E-11 65.8 7.7 122 5-135 65-186 (429)
56 COG3063 PilF Tfp pilus assembl 98.3 5.3E-05 1.2E-09 53.3 13.4 148 11-173 40-188 (250)
57 PRK14574 hmsH outer membrane p 98.3 9.3E-05 2E-09 62.0 17.0 145 11-172 73-217 (822)
58 PRK11189 lipoprotein NlpI; Pro 98.3 7.8E-05 1.7E-09 55.4 15.1 126 9-150 67-193 (296)
59 TIGR02552 LcrH_SycD type III s 98.3 8.9E-05 1.9E-09 48.2 13.9 100 50-152 16-115 (135)
60 COG3063 PilF Tfp pilus assembl 98.3 3.2E-05 6.9E-10 54.4 12.0 154 6-173 69-222 (250)
61 PRK10049 pgaA outer membrane p 98.3 6.3E-05 1.4E-09 62.9 16.1 154 9-166 313-471 (765)
62 PF09976 TPR_21: Tetratricopep 98.3 3.7E-05 7.9E-10 51.0 12.0 127 9-147 15-143 (145)
63 KOG4626 O-linked N-acetylgluco 98.3 4.5E-06 9.7E-11 66.3 8.4 145 14-175 294-439 (966)
64 PRK14574 hmsH outer membrane p 98.3 7.7E-05 1.7E-09 62.5 16.1 151 11-173 297-465 (822)
65 cd00189 TPR Tetratricopeptide 98.3 3.4E-05 7.3E-10 45.8 10.8 96 53-151 2-97 (100)
66 PF06239 ECSIT: Evolutionarily 98.3 1.5E-05 3.1E-10 55.7 9.9 88 85-173 45-153 (228)
67 PRK10747 putative protoheme IX 98.3 1.4E-05 3.1E-10 61.8 11.0 161 5-175 186-378 (398)
68 TIGR02795 tol_pal_ybgF tol-pal 98.3 9E-05 2E-09 46.8 12.7 103 52-154 3-108 (119)
69 COG5010 TadD Flp pilus assembl 98.3 0.00016 3.4E-09 51.7 14.7 148 12-175 72-219 (257)
70 PRK15179 Vi polysaccharide bio 98.3 0.00011 2.5E-09 60.4 15.9 144 6-166 86-230 (694)
71 COG2956 Predicted N-acetylgluc 98.3 4.3E-05 9.4E-10 56.3 12.0 155 11-175 74-266 (389)
72 KOG3081 Vesicle coat complex C 98.2 0.00013 2.9E-09 52.4 13.7 130 13-165 115-248 (299)
73 PRK15359 type III secretion sy 98.2 2.2E-05 4.8E-10 52.1 9.5 103 9-126 27-129 (144)
74 PRK02603 photosystem I assembl 98.2 0.00018 3.8E-09 49.1 13.8 118 50-174 34-167 (172)
75 COG2956 Predicted N-acetylgluc 98.2 8.4E-05 1.8E-09 54.9 12.3 124 19-154 48-173 (389)
76 PF12895 Apc3: Anaphase-promot 98.2 1.2E-05 2.7E-10 48.1 6.8 82 64-147 2-83 (84)
77 PRK10747 putative protoheme IX 98.2 5.8E-05 1.3E-09 58.4 12.1 128 5-150 262-389 (398)
78 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 7.2E-05 1.6E-09 57.5 12.4 117 51-175 169-285 (395)
79 PF05843 Suf: Suppressor of fo 98.2 6.8E-05 1.5E-09 55.3 11.8 132 7-151 2-136 (280)
80 KOG1155 Anaphase-promoting com 98.2 0.00015 3.3E-09 55.8 13.7 134 3-150 361-494 (559)
81 KOG1129 TPR repeat-containing 98.2 1.9E-05 4.1E-10 58.4 8.6 134 2-149 252-385 (478)
82 PF12921 ATP13: Mitochondrial 98.2 6.8E-05 1.5E-09 48.5 10.3 97 6-102 2-103 (126)
83 TIGR02552 LcrH_SycD type III s 98.2 3.3E-05 7.3E-10 50.3 9.1 105 8-127 19-123 (135)
84 TIGR00540 hemY_coli hemY prote 98.1 6.8E-05 1.5E-09 58.3 12.0 133 5-149 262-397 (409)
85 COG3071 HemY Uncharacterized e 98.1 0.00013 2.9E-09 55.0 12.8 165 2-174 183-377 (400)
86 KOG2003 TPR repeat-containing 98.1 0.00024 5.1E-09 55.0 14.2 146 11-173 563-709 (840)
87 KOG4318 Bicoid mRNA stability 98.1 1.9E-06 4.2E-11 70.4 3.1 83 45-140 19-101 (1088)
88 TIGR02795 tol_pal_ybgF tol-pal 98.1 8.6E-05 1.9E-09 46.9 9.8 102 8-117 4-106 (119)
89 KOG1840 Kinesin light chain [C 98.1 6.7E-05 1.5E-09 59.3 10.8 164 8-176 201-385 (508)
90 TIGR00540 hemY_coli hemY prote 98.1 0.0003 6.5E-09 54.7 14.1 122 19-154 97-219 (409)
91 cd00189 TPR Tetratricopeptide 98.0 6.9E-05 1.5E-09 44.4 8.5 95 8-115 2-96 (100)
92 TIGR03302 OM_YfiO outer membra 98.0 0.00027 5.8E-09 50.6 12.8 136 8-151 72-232 (235)
93 CHL00033 ycf3 photosystem I as 98.0 0.0005 1.1E-08 46.7 13.2 122 50-174 34-167 (168)
94 PRK11189 lipoprotein NlpI; Pro 98.0 0.00058 1.3E-08 50.8 14.3 101 51-154 64-164 (296)
95 PRK15363 pathogenicity island 98.0 0.00097 2.1E-08 44.5 13.7 100 50-152 34-133 (157)
96 PF05843 Suf: Suppressor of fo 98.0 0.00012 2.5E-09 54.1 10.3 119 52-174 2-123 (280)
97 PRK15179 Vi polysaccharide bio 98.0 0.00042 9.2E-09 57.2 13.9 123 47-175 82-205 (694)
98 COG4783 Putative Zn-dependent 98.0 0.00067 1.5E-08 52.6 14.0 107 62-174 317-424 (484)
99 KOG1070 rRNA processing protei 98.0 0.00013 2.8E-09 62.7 11.0 137 8-157 1532-1668(1710)
100 PRK10370 formate-dependent nit 98.0 0.00015 3.3E-09 50.7 9.8 109 3-125 70-181 (198)
101 KOG1126 DNA-binding cell divis 97.9 0.00026 5.6E-09 56.6 11.5 131 9-154 492-623 (638)
102 cd05804 StaR_like StaR_like; a 97.9 0.00026 5.6E-09 53.7 11.5 98 52-151 115-215 (355)
103 cd05804 StaR_like StaR_like; a 97.9 0.0024 5.2E-08 48.4 16.3 146 14-175 51-203 (355)
104 PLN03088 SGT1, suppressor of 97.9 0.00063 1.4E-08 52.0 12.8 94 58-154 9-102 (356)
105 KOG2002 TPR-containing nuclear 97.9 7E-05 1.5E-09 62.1 7.7 133 20-166 626-759 (1018)
106 PF09976 TPR_21: Tetratricopep 97.9 0.0011 2.3E-08 43.9 12.3 121 51-175 12-135 (145)
107 PF12921 ATP13: Mitochondrial 97.8 0.0009 2E-08 43.3 11.1 51 118-169 48-99 (126)
108 KOG1173 Anaphase-promoting com 97.8 0.00026 5.6E-09 55.7 9.9 141 15-170 389-534 (611)
109 COG3071 HemY Uncharacterized e 97.8 0.0014 2.9E-08 49.7 12.3 129 8-154 265-393 (400)
110 COG4783 Putative Zn-dependent 97.7 0.00099 2.1E-08 51.7 11.8 118 16-148 316-434 (484)
111 KOG0547 Translocase of outer m 97.7 0.00077 1.7E-08 52.5 10.7 129 8-149 430-564 (606)
112 KOG2076 RNA polymerase III tra 97.7 0.0027 5.9E-08 52.6 14.3 132 19-165 152-283 (895)
113 PF14559 TPR_19: Tetratricopep 97.7 0.00033 7.1E-09 39.9 6.8 52 63-116 3-54 (68)
114 PF12569 NARP1: NMDA receptor- 97.7 0.0019 4.1E-08 51.6 12.9 127 9-149 197-332 (517)
115 PF03704 BTAD: Bacterial trans 97.7 0.0033 7.1E-08 41.5 12.3 112 50-163 2-141 (146)
116 PLN03088 SGT1, suppressor of 97.6 0.00086 1.9E-08 51.2 10.2 102 13-129 9-110 (356)
117 PF12895 Apc3: Anaphase-promot 97.6 3.6E-05 7.8E-10 46.0 2.3 82 19-112 2-83 (84)
118 KOG2076 RNA polymerase III tra 97.6 0.0013 2.9E-08 54.4 11.6 124 47-173 410-541 (895)
119 PF13432 TPR_16: Tetratricopep 97.6 0.0005 1.1E-08 38.8 6.8 57 94-151 4-60 (65)
120 PRK02603 photosystem I assembl 97.6 0.002 4.3E-08 43.9 10.8 84 8-102 37-121 (172)
121 CHL00033 ycf3 photosystem I as 97.6 0.0018 4E-08 43.9 10.6 95 8-112 37-138 (168)
122 KOG2002 TPR-containing nuclear 97.5 0.0022 4.7E-08 53.7 11.7 151 2-166 266-422 (1018)
123 KOG1173 Anaphase-promoting com 97.5 0.0049 1.1E-07 48.9 13.0 157 4-175 310-506 (611)
124 KOG2003 TPR repeat-containing 97.5 0.0027 5.8E-08 49.4 11.1 108 57-170 564-671 (840)
125 PLN02789 farnesyltranstransfer 97.5 0.0088 1.9E-07 45.1 13.8 147 9-171 40-189 (320)
126 PF14559 TPR_19: Tetratricopep 97.5 0.00061 1.3E-08 38.7 5.8 63 98-164 2-64 (68)
127 KOG1070 rRNA processing protei 97.4 0.0058 1.3E-07 53.2 13.0 131 5-149 1457-1591(1710)
128 PF13414 TPR_11: TPR repeat; P 97.4 0.0012 2.7E-08 37.6 6.7 60 89-149 5-65 (69)
129 PRK10153 DNA-binding transcrip 97.4 0.0075 1.6E-07 48.4 13.0 138 4-154 335-485 (517)
130 PF03704 BTAD: Bacterial trans 97.3 0.0018 3.8E-08 42.8 7.7 71 54-126 65-140 (146)
131 PF13371 TPR_9: Tetratricopept 97.3 0.0013 2.9E-08 37.8 6.3 58 95-153 3-60 (73)
132 KOG0547 Translocase of outer m 97.3 0.0059 1.3E-07 47.8 10.9 153 5-174 393-553 (606)
133 PF12688 TPR_5: Tetratrico pep 97.3 0.017 3.8E-07 37.0 12.9 106 57-170 7-118 (120)
134 PF13432 TPR_16: Tetratricopep 97.3 0.0017 3.6E-08 36.6 6.3 58 57-116 3-60 (65)
135 PRK14720 transcript cleavage f 97.3 0.004 8.6E-08 52.6 10.4 133 4-151 29-178 (906)
136 KOG3060 Uncharacterized conser 97.3 0.014 3.1E-07 42.0 11.6 143 19-174 25-170 (289)
137 KOG3941 Intermediate in Toll s 97.2 0.003 6.5E-08 46.2 8.3 69 103-172 88-172 (406)
138 KOG3081 Vesicle coat complex C 97.2 0.027 5.9E-07 40.9 12.9 126 13-154 144-274 (299)
139 PF12569 NARP1: NMDA receptor- 97.2 0.021 4.6E-07 45.8 13.8 145 6-154 143-294 (517)
140 PF13414 TPR_11: TPR repeat; P 97.2 0.0029 6.3E-08 36.0 6.8 64 50-115 2-66 (69)
141 KOG3616 Selective LIM binding 97.2 0.001 2.2E-08 54.5 6.3 112 13-148 739-850 (1636)
142 KOG1914 mRNA cleavage and poly 97.2 0.015 3.3E-07 46.1 12.0 119 51-174 366-488 (656)
143 KOG3941 Intermediate in Toll s 97.2 0.011 2.5E-07 43.3 10.5 102 47-149 63-186 (406)
144 PF04840 Vps16_C: Vps16, C-ter 97.2 0.013 2.9E-07 44.0 11.3 107 8-145 179-285 (319)
145 PF13424 TPR_12: Tetratricopep 97.1 0.0027 5.9E-08 37.1 6.2 60 53-112 7-71 (78)
146 PRK10803 tol-pal system protei 97.1 0.02 4.3E-07 41.9 11.8 101 51-154 143-249 (263)
147 KOG0553 TPR repeat-containing 97.1 0.012 2.6E-07 43.3 10.2 101 59-165 89-189 (304)
148 PF13424 TPR_12: Tetratricopep 97.1 0.003 6.6E-08 36.9 6.2 64 87-150 5-74 (78)
149 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.022 4.7E-07 44.5 12.0 67 47-116 71-141 (453)
150 KOG3785 Uncharacterized conser 97.1 0.0055 1.2E-07 46.3 8.5 127 10-150 289-456 (557)
151 KOG1128 Uncharacterized conser 97.1 0.0028 6E-08 51.6 7.4 133 7-152 425-583 (777)
152 PLN02789 farnesyltranstransfer 97.0 0.035 7.5E-07 41.9 12.4 148 7-170 72-229 (320)
153 PF12688 TPR_5: Tetratrico pep 97.0 0.034 7.4E-07 35.6 10.7 108 12-133 7-117 (120)
154 COG4700 Uncharacterized protei 97.0 0.055 1.2E-06 37.5 11.8 124 47-174 85-209 (251)
155 KOG3060 Uncharacterized conser 96.9 0.085 1.8E-06 38.2 13.0 128 10-151 56-183 (289)
156 KOG0495 HAT repeat protein [RN 96.9 0.064 1.4E-06 43.8 13.5 147 8-173 620-768 (913)
157 KOG2047 mRNA splicing factor [ 96.9 0.031 6.8E-07 45.4 11.7 147 7-170 103-293 (835)
158 PRK10803 tol-pal system protei 96.9 0.014 3E-07 42.7 9.2 100 9-116 146-246 (263)
159 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.019 4.2E-07 44.8 10.0 86 86-173 74-176 (453)
160 KOG1915 Cell cycle control pro 96.8 0.048 1E-06 42.9 11.5 137 18-172 85-221 (677)
161 COG4235 Cytochrome c biogenesi 96.8 0.06 1.3E-06 39.7 11.5 107 47-154 152-259 (287)
162 PF13929 mRNA_stabil: mRNA sta 96.7 0.14 2.9E-06 37.8 13.1 142 19-170 141-290 (292)
163 PRK15363 pathogenicity island 96.7 0.02 4.4E-07 38.3 8.2 92 11-115 40-131 (157)
164 COG4700 Uncharacterized protei 96.7 0.11 2.4E-06 36.0 12.0 130 7-150 90-225 (251)
165 PF14938 SNAP: Soluble NSF att 96.7 0.035 7.5E-07 41.1 10.0 118 52-169 115-246 (282)
166 PF13371 TPR_9: Tetratricopept 96.7 0.018 4E-07 32.9 6.9 58 58-117 2-59 (73)
167 KOG1128 Uncharacterized conser 96.6 0.014 3.1E-07 47.7 8.1 139 10-173 402-568 (777)
168 KOG0985 Vesicle coat protein c 96.6 0.085 1.8E-06 45.3 12.5 142 6-174 1104-1265(1666)
169 KOG3616 Selective LIM binding 96.6 0.016 3.4E-07 48.0 8.2 107 9-146 768-874 (1636)
170 KOG2796 Uncharacterized conser 96.6 0.072 1.6E-06 38.9 10.4 131 12-154 183-318 (366)
171 KOG1125 TPR repeat-containing 96.5 0.038 8.2E-07 44.1 9.6 141 22-175 410-559 (579)
172 PRK10866 outer membrane biogen 96.5 0.15 3.3E-06 36.9 12.2 154 12-175 38-229 (243)
173 smart00299 CLH Clathrin heavy 96.5 0.12 2.5E-06 33.9 14.5 132 5-171 6-138 (140)
174 KOG1915 Cell cycle control pro 96.5 0.29 6.3E-06 38.8 13.9 133 6-152 400-537 (677)
175 KOG3785 Uncharacterized conser 96.4 0.024 5.3E-07 42.9 7.7 93 57-154 399-493 (557)
176 KOG4570 Uncharacterized conser 96.4 0.049 1.1E-06 40.6 8.9 105 45-151 58-164 (418)
177 PRK14720 transcript cleavage f 96.4 0.11 2.3E-06 44.5 11.9 145 8-169 118-268 (906)
178 KOG1174 Anaphase-promoting com 96.4 0.1 2.2E-06 40.5 10.7 57 14-79 204-260 (564)
179 COG1729 Uncharacterized protei 96.4 0.08 1.7E-06 38.5 9.8 101 51-154 142-247 (262)
180 PF04840 Vps16_C: Vps16, C-ter 96.3 0.079 1.7E-06 40.0 9.9 84 53-147 179-262 (319)
181 KOG0495 HAT repeat protein [RN 96.3 0.29 6.2E-06 40.3 13.2 153 2-170 647-799 (913)
182 KOG4162 Predicted calmodulin-b 96.2 0.15 3.2E-06 42.2 11.4 130 9-153 653-785 (799)
183 KOG2376 Signal recognition par 96.2 0.17 3.7E-06 40.8 11.4 124 13-154 19-142 (652)
184 KOG4340 Uncharacterized conser 96.1 0.088 1.9E-06 39.2 9.2 131 8-153 12-209 (459)
185 KOG0985 Vesicle coat protein c 96.1 0.17 3.6E-06 43.7 11.6 154 5-175 983-1183(1666)
186 KOG1914 mRNA cleavage and poly 96.1 0.59 1.3E-05 37.6 14.2 132 7-150 367-500 (656)
187 COG3629 DnrI DNA-binding trans 96.0 0.11 2.4E-06 38.3 9.3 77 89-167 155-236 (280)
188 PF13525 YfiO: Outer membrane 96.0 0.25 5.4E-06 34.6 10.9 150 13-173 12-193 (203)
189 COG4235 Cytochrome c biogenesi 96.0 0.15 3.4E-06 37.6 9.9 113 3-130 153-268 (287)
190 PF04053 Coatomer_WDAD: Coatom 96.0 0.26 5.5E-06 39.0 11.8 104 13-148 325-428 (443)
191 PRK15331 chaperone protein Sic 95.9 0.3 6.5E-06 33.0 10.4 92 57-151 43-134 (165)
192 PF10300 DUF3808: Protein of u 95.8 0.64 1.4E-05 37.1 13.6 147 8-168 190-349 (468)
193 PF13428 TPR_14: Tetratricopep 95.8 0.048 1E-06 28.0 5.1 38 124-163 3-40 (44)
194 COG3629 DnrI DNA-binding trans 95.7 0.18 3.9E-06 37.2 9.4 80 53-134 155-239 (280)
195 PRK10153 DNA-binding transcrip 95.7 0.7 1.5E-05 37.4 13.5 123 47-175 333-470 (517)
196 PF14938 SNAP: Soluble NSF att 95.7 0.028 6.1E-07 41.5 5.2 137 9-152 38-185 (282)
197 PF10602 RPN7: 26S proteasome 95.6 0.27 5.9E-06 33.8 9.4 98 51-149 36-140 (177)
198 KOG1125 TPR repeat-containing 95.6 0.068 1.5E-06 42.7 7.2 88 66-154 409-496 (579)
199 KOG2376 Signal recognition par 95.6 1 2.2E-05 36.6 14.1 152 5-171 339-505 (652)
200 PF09205 DUF1955: Domain of un 95.6 0.36 7.9E-06 31.6 10.3 130 11-154 5-152 (161)
201 KOG0553 TPR repeat-containing 95.6 0.21 4.6E-06 36.9 9.2 102 16-133 91-193 (304)
202 COG5107 RNA14 Pre-mRNA 3'-end 95.4 0.34 7.3E-06 38.2 10.2 120 51-174 397-518 (660)
203 PRK04841 transcriptional regul 95.4 0.37 8E-06 41.4 11.8 154 14-174 460-628 (903)
204 KOG2053 Mitochondrial inherita 95.4 0.36 7.9E-06 40.8 10.9 115 16-147 19-139 (932)
205 PRK04841 transcriptional regul 95.3 0.55 1.2E-05 40.4 12.4 136 10-150 495-640 (903)
206 KOG2047 mRNA splicing factor [ 95.3 0.7 1.5E-05 38.0 11.7 95 51-149 102-196 (835)
207 PF13170 DUF4003: Protein of u 95.1 0.14 3.1E-06 38.2 7.3 130 22-164 78-223 (297)
208 PF13512 TPR_18: Tetratricopep 95.1 0.57 1.2E-05 30.9 11.8 85 50-135 10-95 (142)
209 PF07079 DUF1347: Protein of u 95.0 0.62 1.3E-05 36.7 10.6 145 16-170 16-179 (549)
210 COG5107 RNA14 Pre-mRNA 3'-end 95.0 0.64 1.4E-05 36.7 10.6 131 7-151 398-531 (660)
211 KOG2796 Uncharacterized conser 95.0 0.76 1.6E-05 33.8 10.3 141 8-154 138-284 (366)
212 smart00299 CLH Clathrin heavy 95.0 0.6 1.3E-05 30.4 10.4 87 54-149 10-96 (140)
213 KOG0543 FKBP-type peptidyl-pro 95.0 0.93 2E-05 35.0 11.2 95 59-154 216-323 (397)
214 PF13176 TPR_7: Tetratricopept 94.9 0.061 1.3E-06 26.4 3.5 23 125-147 2-24 (36)
215 KOG4340 Uncharacterized conser 94.9 0.24 5.2E-06 36.9 7.8 56 62-119 155-210 (459)
216 KOG1174 Anaphase-promoting com 94.9 1.4 3E-05 34.5 12.0 126 14-153 342-502 (564)
217 PF13176 TPR_7: Tetratricopept 94.7 0.071 1.5E-06 26.1 3.4 26 89-114 1-26 (36)
218 PF04184 ST7: ST7 protein; In 94.6 1.8 3.8E-05 34.7 12.2 86 51-136 259-345 (539)
219 KOG1127 TPR repeat-containing 94.6 0.45 9.8E-06 40.9 9.6 131 8-150 494-624 (1238)
220 PF10300 DUF3808: Protein of u 94.6 0.76 1.7E-05 36.7 10.7 118 19-149 246-374 (468)
221 KOG0548 Molecular co-chaperone 94.6 0.69 1.5E-05 36.9 10.0 104 59-168 10-114 (539)
222 PF13762 MNE1: Mitochondrial s 94.6 0.84 1.8E-05 30.3 11.6 114 45-172 8-129 (145)
223 PF00637 Clathrin: Region in C 94.4 0.011 2.4E-07 38.8 0.0 110 57-174 13-141 (143)
224 KOG2053 Mitochondrial inherita 94.3 0.79 1.7E-05 38.9 10.2 107 62-174 20-126 (932)
225 PF04184 ST7: ST7 protein; In 94.2 2.3 5.1E-05 34.0 13.8 75 91-165 263-338 (539)
226 cd00923 Cyt_c_Oxidase_Va Cytoc 94.1 0.56 1.2E-05 28.8 6.8 45 69-114 25-69 (103)
227 PF09613 HrpB1_HrpK: Bacterial 94.1 1.2 2.5E-05 30.1 10.9 76 53-132 9-87 (160)
228 KOG1156 N-terminal acetyltrans 94.1 2.8 6.1E-05 34.5 12.7 28 5-32 74-101 (700)
229 PRK10866 outer membrane biogen 93.8 1.9 4E-05 31.3 11.0 83 50-133 31-115 (243)
230 KOG0543 FKBP-type peptidyl-pro 93.8 0.65 1.4E-05 35.8 8.2 132 15-150 217-354 (397)
231 KOG1156 N-terminal acetyltrans 93.7 1.7 3.8E-05 35.7 10.8 132 3-148 366-508 (700)
232 PF10602 RPN7: 26S proteasome 93.7 1.5 3.3E-05 30.1 10.0 81 70-150 19-101 (177)
233 COG3118 Thioredoxin domain-con 93.6 2.2 4.8E-05 31.7 11.3 141 15-172 143-286 (304)
234 KOG4162 Predicted calmodulin-b 93.6 2.8 6.1E-05 35.2 11.9 118 53-175 652-771 (799)
235 KOG1127 TPR repeat-containing 93.6 0.5 1.1E-05 40.6 7.9 131 5-149 525-657 (1238)
236 PF13428 TPR_14: Tetratricopep 93.5 0.28 6.1E-06 25.1 4.4 25 91-115 5-29 (44)
237 COG1729 Uncharacterized protei 93.4 2.3 5.1E-05 31.1 10.8 66 87-153 142-209 (262)
238 PF13374 TPR_10: Tetratricopep 93.3 0.32 6.9E-06 24.1 4.4 29 122-150 2-30 (42)
239 PF02284 COX5A: Cytochrome c o 93.1 1.3 2.9E-05 27.5 9.3 46 105-150 28-73 (108)
240 PF13374 TPR_10: Tetratricopep 92.9 0.38 8.2E-06 23.8 4.3 25 89-113 4-28 (42)
241 KOG0548 Molecular co-chaperone 92.7 3.8 8.3E-05 32.9 11.1 92 58-152 365-456 (539)
242 KOG2280 Vacuolar assembly/sort 92.5 2.4 5.3E-05 35.5 10.1 109 8-146 686-794 (829)
243 KOG4555 TPR repeat-containing 92.4 2.1 4.5E-05 28.1 10.5 105 59-165 51-167 (175)
244 KOG4570 Uncharacterized conser 92.4 0.61 1.3E-05 35.1 6.2 99 7-115 65-163 (418)
245 PF13512 TPR_18: Tetratricopep 92.3 2.2 4.8E-05 28.2 9.4 81 13-102 17-97 (142)
246 PF13525 YfiO: Outer membrane 92.2 2.9 6.2E-05 29.3 10.3 100 51-151 5-119 (203)
247 PF09205 DUF1955: Domain of un 92.0 2.3 5.1E-05 27.9 7.7 68 50-119 85-152 (161)
248 TIGR02561 HrpB1_HrpK type III 92.0 2.6 5.6E-05 28.2 10.9 77 53-134 9-88 (153)
249 PF02284 COX5A: Cytochrome c o 91.9 1.9 4.1E-05 26.8 6.9 61 68-131 27-88 (108)
250 COG4649 Uncharacterized protei 91.8 3.1 6.8E-05 28.7 12.0 146 16-172 68-218 (221)
251 cd00923 Cyt_c_Oxidase_Va Cytoc 91.5 1.4 3E-05 27.1 6.0 63 103-167 23-85 (103)
252 PRK15331 chaperone protein Sic 91.3 1.4 3E-05 29.9 6.5 89 14-115 45-133 (165)
253 PF10366 Vps39_1: Vacuolar sor 91.2 2.5 5.5E-05 26.5 7.4 28 123-150 40-67 (108)
254 PF07163 Pex26: Pex26 protein; 91.1 4.8 0.0001 29.9 9.4 87 57-145 89-181 (309)
255 KOG2610 Uncharacterized conser 90.9 4.6 9.9E-05 31.0 9.4 84 19-115 116-203 (491)
256 KOG0550 Molecular chaperone (D 90.9 6.6 0.00014 30.9 11.4 108 62-173 260-372 (486)
257 KOG3617 WD40 and TPR repeat-co 90.9 2.2 4.8E-05 36.5 8.4 125 7-147 758-883 (1416)
258 COG3898 Uncharacterized membra 90.8 6.6 0.00014 30.8 11.0 29 129-158 270-298 (531)
259 PF13929 mRNA_stabil: mRNA sta 90.8 5.4 0.00012 29.7 10.1 85 47-131 198-287 (292)
260 PF00637 Clathrin: Region in C 90.8 0.046 1E-06 35.9 -0.9 90 7-114 8-97 (143)
261 KOG4555 TPR repeat-containing 90.7 1.6 3.5E-05 28.6 6.1 94 15-119 52-147 (175)
262 COG4105 ComL DNA uptake lipopr 90.7 5.1 0.00011 29.2 13.6 150 13-172 41-218 (254)
263 PF13281 DUF4071: Domain of un 90.2 6.9 0.00015 30.4 10.1 76 92-168 146-227 (374)
264 COG3947 Response regulator con 90.0 3 6.6E-05 31.2 7.7 155 4-162 164-357 (361)
265 KOG3617 WD40 and TPR repeat-co 89.4 2.8 6.1E-05 35.9 7.9 123 13-148 833-993 (1416)
266 PF00515 TPR_1: Tetratricopept 89.4 1.4 3E-05 20.7 4.2 26 53-78 3-28 (34)
267 PF07721 TPR_4: Tetratricopept 88.8 0.61 1.3E-05 20.9 2.3 24 8-31 3-26 (26)
268 COG3898 Uncharacterized membra 88.7 6.6 0.00014 30.7 8.9 89 63-157 132-223 (531)
269 COG4455 ImpE Protein of avirul 88.3 4.9 0.00011 28.9 7.4 76 54-131 4-81 (273)
270 PF00515 TPR_1: Tetratricopept 88.1 1.8 3.8E-05 20.3 4.5 27 124-150 3-29 (34)
271 PF11846 DUF3366: Domain of un 87.9 3.2 6.9E-05 28.8 6.5 52 63-114 120-171 (193)
272 KOG1538 Uncharacterized conser 87.8 4.9 0.00011 33.5 8.1 90 50-151 746-846 (1081)
273 KOG0276 Vesicle coat complex C 87.2 11 0.00023 31.3 9.6 82 50-147 665-746 (794)
274 COG4455 ImpE Protein of avirul 87.1 7 0.00015 28.1 7.7 47 50-96 34-81 (273)
275 PF11848 DUF3368: Domain of un 86.9 3.1 6.7E-05 21.8 4.9 33 133-166 13-45 (48)
276 KOG2610 Uncharacterized conser 86.7 12 0.00026 28.8 9.1 108 63-175 115-226 (491)
277 PF09613 HrpB1_HrpK: Bacterial 86.4 7.9 0.00017 26.2 7.4 57 94-152 17-74 (160)
278 TIGR03504 FimV_Cterm FimV C-te 86.4 3.1 6.8E-05 21.4 4.4 23 93-115 5-27 (44)
279 PF07719 TPR_2: Tetratricopept 86.3 2.3 4.9E-05 19.7 4.2 25 54-78 4-28 (34)
280 PRK10564 maltose regulon perip 86.1 2.4 5.1E-05 31.7 5.2 44 118-162 252-296 (303)
281 PF11207 DUF2989: Protein of u 85.7 10 0.00022 26.7 9.6 74 99-175 119-195 (203)
282 KOG2114 Vacuolar assembly/sort 85.5 15 0.00033 31.5 9.9 56 57-114 403-458 (933)
283 PF11817 Foie-gras_1: Foie gra 85.3 5.3 0.00011 29.0 6.7 78 69-149 163-245 (247)
284 PF13934 ELYS: Nuclear pore co 84.8 12 0.00026 26.8 11.6 104 9-134 79-184 (226)
285 PF13762 MNE1: Mitochondrial s 84.4 9.7 0.00021 25.3 8.1 88 52-139 40-132 (145)
286 KOG2063 Vacuolar assembly/sort 84.3 8.7 0.00019 33.2 8.3 120 7-134 505-638 (877)
287 TIGR03504 FimV_Cterm FimV C-te 84.3 3.7 8.1E-05 21.2 4.1 24 57-80 5-28 (44)
288 KOG0624 dsRNA-activated protei 84.3 17 0.00037 28.1 12.4 136 14-153 114-254 (504)
289 KOG2041 WD40 repeat protein [G 84.1 13 0.00029 31.5 8.9 68 3-80 689-763 (1189)
290 PF13181 TPR_8: Tetratricopept 84.1 3.1 6.7E-05 19.4 4.2 26 53-78 3-28 (34)
291 PF11663 Toxin_YhaV: Toxin wit 83.8 1.4 3E-05 28.8 2.8 34 132-168 105-138 (140)
292 PF13431 TPR_17: Tetratricopep 83.8 1.6 3.5E-05 20.9 2.5 22 50-71 12-33 (34)
293 PF13170 DUF4003: Protein of u 83.8 16 0.00035 27.4 10.7 89 67-158 78-179 (297)
294 KOG2041 WD40 repeat protein [G 83.7 18 0.0004 30.7 9.5 13 20-32 748-760 (1189)
295 KOG2114 Vacuolar assembly/sort 83.5 26 0.00056 30.3 10.4 117 9-148 337-457 (933)
296 PF07035 Mic1: Colon cancer-as 83.5 12 0.00025 25.6 10.5 92 46-148 24-115 (167)
297 PF04053 Coatomer_WDAD: Coatom 83.3 21 0.00047 28.5 14.0 118 13-152 268-403 (443)
298 PF11817 Foie-gras_1: Foie gra 83.2 13 0.00028 27.0 8.0 71 103-175 161-235 (247)
299 PF13174 TPR_6: Tetratricopept 82.9 3.3 7.2E-05 18.9 3.5 23 58-80 7-29 (33)
300 TIGR02508 type_III_yscG type I 82.6 5.7 0.00012 24.7 4.9 86 67-162 21-106 (115)
301 PF08870 DUF1832: Domain of un 82.3 6.6 0.00014 24.9 5.4 35 67-101 5-40 (113)
302 PF11846 DUF3366: Domain of un 82.0 8.2 0.00018 26.7 6.4 54 99-152 120-174 (193)
303 KOG0624 dsRNA-activated protei 81.5 23 0.00049 27.5 10.4 55 13-78 162-216 (504)
304 COG4105 ComL DNA uptake lipopr 81.3 19 0.00041 26.4 10.1 75 58-133 41-117 (254)
305 TIGR02561 HrpB1_HrpK type III 81.2 14 0.0003 24.8 7.8 52 18-80 22-73 (153)
306 PF13934 ELYS: Nuclear pore co 80.9 18 0.00039 26.0 9.4 104 53-169 78-183 (226)
307 KOG0890 Protein kinase of the 80.9 26 0.00055 33.8 10.2 122 11-148 1388-1509(2382)
308 KOG4077 Cytochrome c oxidase, 80.7 13 0.00028 24.2 7.1 45 106-150 68-112 (149)
309 KOG2280 Vacuolar assembly/sort 80.7 10 0.00022 32.1 7.2 87 77-174 674-760 (829)
310 PF08631 SPO22: Meiosis protei 80.7 20 0.00044 26.4 10.6 100 52-154 85-189 (278)
311 PF08631 SPO22: Meiosis protei 80.5 21 0.00045 26.4 12.5 127 16-151 3-150 (278)
312 COG5108 RPO41 Mitochondrial DN 80.5 14 0.0003 31.1 7.8 76 56-134 33-115 (1117)
313 PF09454 Vps23_core: Vps23 cor 80.5 4.8 0.0001 22.7 3.9 51 84-135 5-55 (65)
314 PF11663 Toxin_YhaV: Toxin wit 80.2 1.5 3.2E-05 28.7 1.9 35 96-132 104-138 (140)
315 TIGR03184 DNA_S_dndE DNA sulfu 80.1 10 0.00022 23.7 5.6 91 68-172 5-98 (105)
316 PRK11906 transcriptional regul 79.2 31 0.00067 27.6 9.8 48 98-147 349-397 (458)
317 PF13281 DUF4071: Domain of un 79.1 28 0.00061 27.1 12.5 153 12-174 147-321 (374)
318 PF14669 Asp_Glu_race_2: Putat 79.0 3.7 8.1E-05 28.7 3.7 56 92-147 137-206 (233)
319 KOG1586 Protein required for f 78.9 23 0.00049 25.9 9.2 28 98-125 165-192 (288)
320 PRK14958 DNA polymerase III su 78.4 35 0.00076 27.8 10.9 89 68-160 181-282 (509)
321 PF11848 DUF3368: Domain of un 78.0 8 0.00017 20.2 4.8 32 62-94 13-44 (48)
322 PF10579 Rapsyn_N: Rapsyn N-te 77.9 12 0.00026 22.1 5.4 46 63-108 18-64 (80)
323 COG0735 Fur Fe2+/Zn2+ uptake r 77.3 13 0.00028 24.6 5.9 44 93-136 26-69 (145)
324 smart00028 TPR Tetratricopepti 77.1 4.9 0.00011 17.3 3.1 23 91-113 5-27 (34)
325 PF02847 MA3: MA3 domain; Int 76.9 12 0.00027 23.2 5.5 23 56-78 7-29 (113)
326 KOG1538 Uncharacterized conser 76.8 6.4 0.00014 32.9 5.0 92 49-146 554-656 (1081)
327 PF14689 SPOB_a: Sensor_kinase 76.6 5.7 0.00012 22.1 3.5 46 103-150 6-51 (62)
328 PRK14956 DNA polymerase III su 76.4 39 0.00086 27.4 10.7 91 68-161 183-286 (484)
329 KOG0403 Neoplastic transformat 76.1 29 0.00064 27.9 8.1 73 92-170 514-586 (645)
330 KOG0403 Neoplastic transformat 76.0 30 0.00064 27.8 8.1 107 54-168 512-626 (645)
331 KOG1920 IkappaB kinase complex 75.6 62 0.0013 29.3 11.8 92 46-150 930-1027(1265)
332 COG0735 Fur Fe2+/Zn2+ uptake r 75.4 17 0.00036 24.1 6.0 63 109-173 8-70 (145)
333 PF09454 Vps23_core: Vps23 cor 75.2 10 0.00022 21.4 4.3 51 119-171 5-55 (65)
334 PLN03025 replication factor C 75.2 33 0.00072 25.9 10.1 89 68-160 161-261 (319)
335 PRK10564 maltose regulon perip 74.8 15 0.00032 27.7 6.0 45 46-91 251-296 (303)
336 COG3947 Response regulator con 74.7 22 0.00048 26.8 6.9 59 54-114 282-340 (361)
337 PF07575 Nucleopor_Nup85: Nup8 74.7 23 0.00049 29.2 7.8 112 50-165 404-537 (566)
338 PRK15180 Vi polysaccharide bio 73.3 49 0.0011 27.0 10.3 96 55-154 293-389 (831)
339 COG5108 RPO41 Mitochondrial DN 73.1 17 0.00037 30.7 6.5 76 10-97 32-113 (1117)
340 KOG4648 Uncharacterized conser 72.1 14 0.0003 28.6 5.4 53 15-78 106-158 (536)
341 PRK11639 zinc uptake transcrip 71.3 24 0.00051 24.1 6.1 37 100-136 38-74 (169)
342 PRK07003 DNA polymerase III su 71.1 70 0.0015 27.8 11.4 86 68-157 181-279 (830)
343 cd08819 CARD_MDA5_2 Caspase ac 71.0 20 0.00044 21.6 6.1 66 70-142 21-86 (88)
344 smart00386 HAT HAT (Half-A-TPR 70.6 8.7 0.00019 17.2 3.8 29 136-166 1-29 (33)
345 PF11207 DUF2989: Protein of u 70.4 35 0.00076 24.1 9.2 82 59-142 114-198 (203)
346 PF13877 RPAP3_C: Potential Mo 70.3 21 0.00046 21.5 7.6 88 4-112 2-90 (94)
347 PF01475 FUR: Ferric uptake re 69.3 13 0.00027 23.5 4.3 50 53-103 9-58 (120)
348 PRK08691 DNA polymerase III su 69.2 73 0.0016 27.3 11.6 87 67-157 180-279 (709)
349 PRK15180 Vi polysaccharide bio 69.2 38 0.00083 27.6 7.4 120 17-151 300-420 (831)
350 cd07153 Fur_like Ferric uptake 68.5 17 0.00037 22.7 4.7 48 56-104 5-52 (116)
351 KOG0550 Molecular chaperone (D 68.4 59 0.0013 25.9 10.4 90 16-116 259-350 (486)
352 PF02259 FAT: FAT domain; Int 68.4 48 0.001 24.9 12.7 20 13-32 5-24 (352)
353 PF10475 DUF2450: Protein of u 68.3 31 0.00066 25.8 6.7 109 12-142 104-217 (291)
354 KOG0276 Vesicle coat complex C 67.5 46 0.001 27.9 7.7 85 5-115 665-749 (794)
355 KOG3807 Predicted membrane pro 67.5 48 0.0011 25.6 7.4 69 92-162 280-351 (556)
356 PF08311 Mad3_BUB1_I: Mad3/BUB 67.4 31 0.00066 22.2 8.8 43 105-147 81-124 (126)
357 PF12796 Ank_2: Ankyrin repeat 67.3 17 0.00037 21.1 4.4 83 59-158 2-87 (89)
358 PRK07764 DNA polymerase III su 67.1 80 0.0017 27.6 9.5 86 68-157 182-281 (824)
359 PF12862 Apc5: Anaphase-promot 67.1 25 0.00054 21.1 5.6 22 93-114 47-68 (94)
360 COG2178 Predicted RNA-binding 66.8 42 0.00091 23.6 8.3 99 51-150 29-149 (204)
361 PRK11639 zinc uptake transcrip 66.7 36 0.00077 23.2 6.3 59 113-173 17-75 (169)
362 KOG4077 Cytochrome c oxidase, 66.6 34 0.00073 22.4 5.7 45 69-114 67-111 (149)
363 PF14669 Asp_Glu_race_2: Putat 66.5 26 0.00056 24.8 5.4 57 56-112 137-206 (233)
364 PF11838 ERAP1_C: ERAP1-like C 66.2 52 0.0011 24.5 10.2 115 22-147 146-262 (324)
365 KOG2908 26S proteasome regulat 66.0 60 0.0013 25.1 8.8 87 56-142 80-177 (380)
366 smart00638 LPD_N Lipoprotein N 65.4 77 0.0017 26.1 12.3 84 51-136 340-432 (574)
367 COG0457 NrfG FOG: TPR repeat [ 65.0 38 0.00082 22.5 12.9 29 51-79 95-123 (291)
368 KOG4234 TPR repeat-containing 64.8 49 0.0011 23.7 8.9 93 59-153 103-199 (271)
369 PF07443 HARP: HepA-related pr 64.1 2 4.3E-05 23.4 -0.2 27 104-130 9-35 (55)
370 cd07153 Fur_like Ferric uptake 64.1 22 0.00047 22.2 4.6 47 93-139 6-52 (116)
371 KOG4648 Uncharacterized conser 63.6 39 0.00084 26.3 6.3 78 59-147 105-183 (536)
372 PRK06645 DNA polymerase III su 63.4 82 0.0018 25.8 9.7 88 68-159 190-293 (507)
373 KOG4567 GTPase-activating prot 63.2 65 0.0014 24.6 7.3 58 71-134 263-320 (370)
374 PF02607 B12-binding_2: B12 bi 62.4 23 0.0005 20.3 4.2 39 63-102 13-51 (79)
375 PRK14951 DNA polymerase III su 62.3 95 0.0021 26.1 11.6 86 68-157 186-284 (618)
376 KOG0991 Replication factor C, 62.0 61 0.0013 23.9 12.3 125 10-154 134-270 (333)
377 KOG4567 GTPase-activating prot 62.0 33 0.0007 26.1 5.6 58 107-170 263-320 (370)
378 PRK13713 conjugal transfer pro 61.4 40 0.00086 21.5 6.3 62 67-134 6-69 (118)
379 COG2812 DnaX DNA polymerase II 60.9 93 0.002 25.6 9.4 91 66-161 179-283 (515)
380 KOG1130 Predicted G-alpha GTPa 60.4 55 0.0012 26.2 6.7 101 50-150 234-343 (639)
381 PF02607 B12-binding_2: B12 bi 60.3 18 0.00038 20.8 3.4 38 99-136 13-50 (79)
382 COG0457 NrfG FOG: TPR repeat [ 59.8 48 0.001 21.9 15.3 91 60-151 139-231 (291)
383 PF10255 Paf67: RNA polymerase 59.8 21 0.00045 28.1 4.5 67 8-78 124-191 (404)
384 PF02184 HAT: HAT (Half-A-TPR) 59.5 17 0.00037 17.3 2.6 25 137-164 2-26 (32)
385 PF07079 DUF1347: Protein of u 59.3 24 0.00053 28.3 4.7 65 63-130 474-538 (549)
386 KOG1130 Predicted G-alpha GTPa 59.2 8.2 0.00018 30.5 2.2 114 59-173 25-150 (639)
387 KOG4507 Uncharacterized conser 59.1 1E+02 0.0022 26.0 8.2 89 64-154 620-708 (886)
388 KOG1920 IkappaB kinase complex 58.8 82 0.0018 28.6 8.1 124 12-149 857-992 (1265)
389 cd08819 CARD_MDA5_2 Caspase ac 58.8 38 0.00083 20.4 6.8 62 105-173 20-81 (88)
390 PRK09462 fur ferric uptake reg 58.6 50 0.0011 21.8 5.8 46 57-103 22-68 (148)
391 KOG1585 Protein required for f 58.4 73 0.0016 23.6 7.6 46 125-171 193-241 (308)
392 PRK11906 transcriptional regul 57.1 1E+02 0.0022 24.8 13.8 96 50-148 337-433 (458)
393 PRK12402 replication factor C 56.8 82 0.0018 23.6 7.6 85 69-157 188-286 (337)
394 PRK14963 DNA polymerase III su 56.7 1.1E+02 0.0024 25.0 10.7 86 68-157 178-275 (504)
395 KOG2297 Predicted translation 56.5 62 0.0013 24.7 6.2 16 159-174 322-337 (412)
396 cd00280 TRFH Telomeric Repeat 56.5 67 0.0014 22.5 10.8 65 103-171 85-156 (200)
397 KOG3364 Membrane protein invol 56.4 43 0.00094 22.2 4.8 66 86-151 31-100 (149)
398 KOG1585 Protein required for f 56.4 80 0.0017 23.4 9.6 92 53-145 152-250 (308)
399 PF01475 FUR: Ferric uptake re 56.3 24 0.00052 22.2 3.8 44 93-136 13-56 (120)
400 KOG2908 26S proteasome regulat 56.3 86 0.0019 24.3 7.0 67 93-160 81-157 (380)
401 PF14853 Fis1_TPR_C: Fis1 C-te 56.2 31 0.00066 18.5 4.7 20 131-150 10-29 (53)
402 PF09797 NatB_MDM20: N-acetylt 56.0 59 0.0013 25.1 6.5 68 92-161 185-255 (365)
403 smart00544 MA3 Domain in DAP-5 54.8 49 0.0011 20.5 9.0 26 55-80 6-31 (113)
404 cd08315 Death_TRAILR_DR4_DR5 D 54.7 35 0.00076 20.9 4.1 29 123-151 65-93 (96)
405 PF15469 Sec5: Exocyst complex 54.4 67 0.0015 22.0 8.0 29 52-80 87-115 (182)
406 PF09797 NatB_MDM20: N-acetylt 54.4 61 0.0013 25.0 6.3 34 57-91 223-256 (365)
407 PF09868 DUF2095: Uncharacteri 54.2 51 0.0011 21.0 4.7 25 93-117 67-91 (128)
408 PF08311 Mad3_BUB1_I: Mad3/BUB 54.0 57 0.0012 21.0 8.6 44 68-112 80-124 (126)
409 PF10366 Vps39_1: Vacuolar sor 53.8 53 0.0011 20.5 7.0 27 89-115 41-67 (108)
410 PF07035 Mic1: Colon cancer-as 53.7 69 0.0015 21.9 12.1 123 3-150 26-148 (167)
411 KOG1941 Acetylcholine receptor 53.7 32 0.00069 26.9 4.5 104 9-113 165-272 (518)
412 COG5187 RPN7 26S proteasome re 53.5 98 0.0021 23.6 7.6 106 47-154 77-187 (412)
413 TIGR02508 type_III_yscG type I 52.5 56 0.0012 20.5 9.2 60 59-126 47-106 (115)
414 PF05664 DUF810: Protein of un 52.1 1.2E+02 0.0027 25.8 8.0 70 45-114 211-293 (677)
415 PF07840 FadR_C: FadR C-termin 52.0 74 0.0016 21.7 7.5 30 131-165 127-156 (164)
416 PF09670 Cas_Cas02710: CRISPR- 51.4 84 0.0018 24.6 6.7 18 63-80 143-160 (379)
417 KOG2066 Vacuolar assembly/sort 50.6 1.7E+02 0.0037 25.4 10.7 105 13-134 363-467 (846)
418 TIGR03581 EF_0839 conserved hy 50.3 72 0.0016 22.9 5.5 83 66-149 136-235 (236)
419 KOG2396 HAT (Half-A-TPR) repea 50.2 1.4E+02 0.0031 24.5 8.8 65 84-149 456-523 (568)
420 COG2976 Uncharacterized protei 50.0 90 0.002 22.1 11.1 90 59-154 97-191 (207)
421 PRK09462 fur ferric uptake reg 49.0 75 0.0016 20.9 6.0 62 76-139 7-69 (148)
422 PF10255 Paf67: RNA polymerase 49.0 55 0.0012 25.9 5.3 100 12-114 81-191 (404)
423 PF09868 DUF2095: Uncharacteri 48.9 69 0.0015 20.5 5.2 37 127-165 66-102 (128)
424 PRK09857 putative transposase; 48.6 1.1E+02 0.0025 22.9 8.3 66 90-157 209-274 (292)
425 PRK09111 DNA polymerase III su 48.6 1.6E+02 0.0036 24.7 10.2 85 69-157 195-292 (598)
426 PF12816 Vps8: Golgi CORVET co 48.5 48 0.001 23.2 4.5 47 87-138 22-68 (196)
427 KOG0687 26S proteasome regulat 48.5 1.3E+02 0.0027 23.4 9.2 64 67-130 84-151 (393)
428 cd00280 TRFH Telomeric Repeat 48.5 93 0.002 21.8 7.5 67 67-137 85-158 (200)
429 PRK14952 DNA polymerase III su 48.4 1.6E+02 0.0035 24.6 11.3 85 69-157 181-279 (584)
430 smart00804 TAP_C C-terminal do 48.0 22 0.00047 19.9 2.2 24 64-87 38-61 (63)
431 KOG0991 Replication factor C, 47.9 76 0.0017 23.4 5.4 41 49-91 237-277 (333)
432 COG2405 Predicted nucleic acid 47.6 53 0.0012 21.8 4.2 45 122-168 110-154 (157)
433 PF12926 MOZART2: Mitotic-spin 47.5 62 0.0013 19.5 6.9 42 72-114 29-70 (88)
434 PF04124 Dor1: Dor1-like famil 46.8 38 0.00083 25.9 4.2 20 93-112 112-131 (338)
435 TIGR03362 VI_chp_7 type VI sec 46.1 1.3E+02 0.0028 22.8 6.8 58 94-151 220-279 (301)
436 COG5159 RPN6 26S proteasome re 45.9 1.3E+02 0.0029 22.9 8.6 93 57-150 9-113 (421)
437 PF11491 DUF3213: Protein of u 45.9 4.9 0.00011 23.8 -0.6 24 150-174 17-40 (88)
438 KOG3364 Membrane protein invol 45.3 90 0.002 20.8 9.9 65 52-116 33-100 (149)
439 PF11838 ERAP1_C: ERAP1-like C 45.1 1.3E+02 0.0028 22.4 12.6 95 53-152 131-231 (324)
440 PRK10941 hypothetical protein; 45.0 1.3E+02 0.0028 22.4 9.9 83 88-171 182-264 (269)
441 KOG1166 Mitotic checkpoint ser 44.5 1.6E+02 0.0034 26.5 7.6 62 98-160 89-151 (974)
442 PF02847 MA3: MA3 domain; Int 44.4 74 0.0016 19.5 7.8 24 91-114 6-29 (113)
443 TIGR02397 dnaX_nterm DNA polym 44.3 1.4E+02 0.003 22.7 11.5 84 70-157 181-277 (355)
444 PF12793 SgrR_N: Sugar transpo 44.3 82 0.0018 20.0 6.3 74 72-147 4-95 (115)
445 PF05664 DUF810: Protein of un 44.3 1.6E+02 0.0035 25.2 7.6 69 82-150 212-294 (677)
446 KOG4521 Nuclear pore complex, 43.9 2.7E+02 0.0058 25.8 11.9 120 16-138 930-1070(1480)
447 TIGR01503 MthylAspMut_E methyl 43.8 11 0.00024 30.1 0.8 48 100-150 67-114 (480)
448 PRK09687 putative lyase; Provi 43.4 1.4E+02 0.0029 22.3 14.6 104 52-169 174-278 (280)
449 KOG1498 26S proteasome regulat 43.4 1.7E+02 0.0036 23.3 9.1 90 11-117 136-242 (439)
450 KOG2066 Vacuolar assembly/sort 43.2 2E+02 0.0043 25.1 7.7 15 156-170 453-467 (846)
451 PRK14960 DNA polymerase III su 42.5 2.2E+02 0.0048 24.5 11.6 86 68-157 180-278 (702)
452 PRK14970 DNA polymerase III su 42.5 1.6E+02 0.0034 22.7 10.1 77 82-164 184-274 (367)
453 KOG1114 Tripeptidyl peptidase 42.2 2.6E+02 0.0057 25.2 9.4 52 120-172 1229-1281(1304)
454 KOG2063 Vacuolar assembly/sort 41.4 2.6E+02 0.0056 24.9 9.5 110 53-171 506-639 (877)
455 KOG1464 COP9 signalosome, subu 40.7 1.6E+02 0.0034 22.3 6.9 127 18-151 39-174 (440)
456 COG4649 Uncharacterized protei 40.1 1.3E+02 0.0028 21.1 10.6 93 13-115 101-195 (221)
457 PF14840 DNA_pol3_delt_C: Proc 40.1 35 0.00075 22.0 2.6 29 63-92 9-37 (125)
458 KOG3807 Predicted membrane pro 39.7 1.8E+02 0.0039 22.7 7.5 71 57-127 281-352 (556)
459 cd08318 Death_NMPP84 Death dom 39.2 49 0.0011 19.7 3.0 41 103-145 46-86 (86)
460 PF15297 CKAP2_C: Cytoskeleton 39.1 1.8E+02 0.004 22.6 8.8 64 67-133 119-186 (353)
461 KOG0890 Protein kinase of the 39.0 3.1E+02 0.0067 27.3 8.9 83 11-112 1425-1508(2382)
462 COG3118 Thioredoxin domain-con 39.0 1.7E+02 0.0037 22.2 11.7 116 10-140 172-290 (304)
463 PF08424 NRDE-2: NRDE-2, neces 38.8 1.7E+02 0.0037 22.2 10.7 118 23-153 48-185 (321)
464 KOG4521 Nuclear pore complex, 38.3 3.3E+02 0.0071 25.2 10.2 129 9-147 986-1127(1480)
465 COG2405 Predicted nucleic acid 38.3 85 0.0018 20.9 4.1 42 89-131 112-153 (157)
466 KOG0686 COP9 signalosome, subu 38.0 2.1E+02 0.0046 22.9 8.6 92 52-145 151-252 (466)
467 KOG3036 Protein involved in ce 37.9 1.3E+02 0.0029 22.2 5.4 52 63-114 208-259 (293)
468 PF12862 Apc5: Anaphase-promot 37.9 90 0.002 18.6 6.9 53 98-150 9-69 (94)
469 smart00638 LPD_N Lipoprotein N 37.7 2.3E+02 0.0051 23.4 13.2 114 49-170 308-430 (574)
470 PF10475 DUF2450: Protein of u 37.5 1.7E+02 0.0038 21.8 7.4 77 91-174 131-213 (291)
471 TIGR01428 HAD_type_II 2-haloal 37.5 1.2E+02 0.0026 20.7 5.3 48 72-119 63-110 (198)
472 PRK14953 DNA polymerase III su 37.3 2.3E+02 0.005 23.1 10.4 86 68-157 181-279 (486)
473 PF07575 Nucleopor_Nup85: Nup8 37.1 1.7E+02 0.0038 24.2 6.8 65 88-154 406-470 (566)
474 KOG3677 RNA polymerase I-assoc 37.0 1.7E+02 0.0037 23.5 6.2 62 10-79 239-300 (525)
475 KOG2300 Uncharacterized conser 36.9 2.4E+02 0.0052 23.3 8.2 119 19-150 336-473 (629)
476 PRK14971 DNA polymerase III su 36.9 2.6E+02 0.0056 23.6 10.6 84 70-157 185-281 (614)
477 COG0819 TenA Putative transcri 36.8 1.6E+02 0.0034 21.1 6.7 88 82-170 104-202 (218)
478 PF08424 NRDE-2: NRDE-2, neces 36.8 1.7E+02 0.0038 22.1 6.3 103 8-121 67-189 (321)
479 smart00164 TBC Domain in Tre-2 36.5 1.2E+02 0.0025 20.8 5.0 45 108-152 152-197 (199)
480 PRK14961 DNA polymerase III su 36.3 2E+02 0.0044 22.2 10.2 86 68-157 181-279 (363)
481 KOG4507 Uncharacterized conser 35.7 2.5E+02 0.0055 23.8 7.1 102 19-133 620-721 (886)
482 PRK06305 DNA polymerase III su 35.2 2.4E+02 0.0052 22.7 10.9 84 69-157 184-281 (451)
483 smart00777 Mad3_BUB1_I Mad3/BU 35.2 1.3E+02 0.0027 19.5 8.0 61 83-146 62-123 (125)
484 PRK05563 DNA polymerase III su 34.7 2.7E+02 0.0058 23.2 10.5 85 69-157 182-279 (559)
485 PF09670 Cas_Cas02710: CRISPR- 34.4 2.3E+02 0.0049 22.2 10.1 57 13-80 138-198 (379)
486 PF04034 DUF367: Domain of unk 33.6 1.4E+02 0.003 19.5 8.8 80 66-148 30-125 (127)
487 PF10345 Cohesin_load: Cohesin 33.6 2.9E+02 0.0062 23.2 9.2 132 11-149 105-252 (608)
488 PF04124 Dor1: Dor1-like famil 33.5 68 0.0015 24.5 3.7 38 54-91 109-146 (338)
489 COG5210 GTPase-activating prot 33.5 1.4E+02 0.0031 24.2 5.7 45 72-117 363-407 (496)
490 TIGR01987 HI0074 nucleotidyltr 33.3 1.3E+02 0.0029 19.3 6.4 39 103-141 38-78 (123)
491 KOG2659 LisH motif-containing 33.2 1.9E+02 0.0041 21.0 9.2 95 11-114 32-130 (228)
492 PF06552 TOM20_plant: Plant sp 33.0 1.7E+02 0.0037 20.4 8.1 92 52-151 29-136 (186)
493 PF03745 DUF309: Domain of unk 33.0 91 0.002 17.3 6.0 17 63-79 11-27 (62)
494 KOG3636 Uncharacterized conser 32.8 2.7E+02 0.0059 22.7 9.1 88 44-133 176-271 (669)
495 TIGR02710 CRISPR-associated pr 32.8 2E+02 0.0043 22.7 6.0 55 92-146 135-195 (380)
496 PF12816 Vps8: Golgi CORVET co 32.7 31 0.00067 24.2 1.6 61 5-80 21-81 (196)
497 PF05944 Phage_term_smal: Phag 32.7 1.2E+02 0.0027 19.8 4.3 35 83-118 45-79 (132)
498 PRK13342 recombination factor 32.6 2.5E+02 0.0054 22.2 11.3 100 68-170 154-277 (413)
499 PRK10941 hypothetical protein; 31.6 2.2E+02 0.0047 21.2 7.5 82 51-135 181-264 (269)
500 PRK14962 DNA polymerase III su 31.3 2.9E+02 0.0062 22.5 12.0 97 68-168 179-288 (472)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.3e-33 Score=229.97 Aligned_cols=160 Identities=13% Similarity=0.264 Sum_probs=99.7
Q ss_pred CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589 4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV 83 (176)
Q Consensus 4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~ 83 (176)
|++.+|+.+|.+|++.|++++|.++|++| .. .++.||..+|+++|.+|++.|++++|.++|++|.+. |+
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM-~~---------~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~ 680 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDM-KK---------KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GI 680 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHH-HH---------cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CC
Confidence 44455555555555555555555555555 33 345566666666666666666666666666666666 66
Q ss_pred CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHH
Q 036589 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163 (176)
Q Consensus 84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~ 163 (176)
.||..+|++||.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+. ||..||+.
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~-Pd~~Ty~s 759 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC-PNTITYSI 759 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CCHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666 66666666
Q ss_pred HHHHhhccccCC
Q 036589 164 KIIMNDSQVRVT 175 (176)
Q Consensus 164 li~~~~~~g~~~ 175 (176)
+|.+|++.|+++
T Consensus 760 LL~a~~k~G~le 771 (1060)
T PLN03218 760 LLVASERKDDAD 771 (1060)
T ss_pred HHHHHHHCCCHH
Confidence 666666666543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.8e-33 Score=231.05 Aligned_cols=159 Identities=13% Similarity=0.139 Sum_probs=83.3
Q ss_pred CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589 4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV 83 (176)
Q Consensus 4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~ 83 (176)
|+.++|+.|+.+|++.|++++|.++|++| .+ .++.|+..+|+++|.+|++.|++++|.++|++|.+. |+
T Consensus 577 PD~vTynaLI~ay~k~G~ldeA~elf~~M-~e---------~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv 645 (1060)
T PLN03218 577 PDHITVGALMKACANAGQVDRAKEVYQMI-HE---------YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GV 645 (1060)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH---------cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Confidence 44444444444444444444444444444 22 234445555555555555555555555555555555 55
Q ss_pred CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHH
Q 036589 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163 (176)
Q Consensus 84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~ 163 (176)
.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+. ||..+||+
T Consensus 646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~-PdvvtyN~ 724 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR-PTVSTMNA 724 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555 55555555
Q ss_pred HHHHhhccccC
Q 036589 164 KIIMNDSQVRV 174 (176)
Q Consensus 164 li~~~~~~g~~ 174 (176)
||.+|++.|++
T Consensus 725 LI~gy~k~G~~ 735 (1060)
T PLN03218 725 LITALCEGNQL 735 (1060)
T ss_pred HHHHHHHCCCH
Confidence 55555555554
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.9e-33 Score=225.61 Aligned_cols=159 Identities=15% Similarity=0.183 Sum_probs=144.2
Q ss_pred CCCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 80 (176)
Q Consensus 1 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 80 (176)
|.+|+.++||.|+.+|++.|++++|+++|++| .. .++.||..+|+++|.+|++.|++++|.+++.+|.+.
T Consensus 285 m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M-~~---------~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEM-RD---------SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH-HH---------cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 56788999999999999999999999999999 44 478899999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHH
Q 036589 81 TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLC 160 (176)
Q Consensus 81 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t 160 (176)
|+.||..+||+||.+|+++|++++|.++|++|. .||..+||+||.+|+++|+.++|.++|++|.+.|+. ||..|
T Consensus 355 -g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~-Pd~~T 428 (697)
T PLN03081 355 -GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA-PNHVT 428 (697)
T ss_pred -CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCHHH
Confidence 899999999999999999999999999999987 478899999999999999999999999999999998 99999
Q ss_pred HHHHHHHhhccccCC
Q 036589 161 SNLKIIMNDSQVRVT 175 (176)
Q Consensus 161 ~~~li~~~~~~g~~~ 175 (176)
|+.+|.+|++.|+++
T Consensus 429 ~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 429 FLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHHHHhcCCcHH
Confidence 999999999988765
No 4
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=1.7e-30 Score=215.41 Aligned_cols=159 Identities=12% Similarity=0.047 Sum_probs=141.7
Q ss_pred CCCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 80 (176)
Q Consensus 1 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 80 (176)
|..|+.++||.||.+|++.|++++|+++|++| .. .++.||..+|+.+|.+|++.|+++.|.+++..|.+.
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M-~~---------~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTM-RE---------LSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH-HH---------cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 56788889999999999999999999999998 44 478899999999999999999999999999999988
Q ss_pred CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHH
Q 036589 81 TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLC 160 (176)
Q Consensus 81 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t 160 (176)
|+.||..+||+||.+|+++|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+. ||..|
T Consensus 318 -g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~-Pd~~t 391 (857)
T PLN03077 318 -GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS-PDEIT 391 (857)
T ss_pred -CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CCcee
Confidence 899999999999999999999999999999997 478889999999999999999999999999999988 99988
Q ss_pred HHHHHHHhhccccCC
Q 036589 161 SNLKIIMNDSQVRVT 175 (176)
Q Consensus 161 ~~~li~~~~~~g~~~ 175 (176)
|+.+|.+|++.|+++
T Consensus 392 ~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 392 IASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhccchHH
Confidence 888888888888765
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.97 E-value=4.4e-30 Score=208.88 Aligned_cols=167 Identities=11% Similarity=0.080 Sum_probs=86.5
Q ss_pred CCCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCC--------------------------CCCCCCCCcHHHH
Q 036589 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEA--------------------------PPLKPFRYNLLHY 54 (176)
Q Consensus 1 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~y 54 (176)
|.+|+.++||.++.+|++.|++++|+++|++| .+.+.... ....++.||..+|
T Consensus 184 m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M-~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~ 262 (697)
T PLN03081 184 MPERNLASWGTIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262 (697)
T ss_pred CCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHH-HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeH
Confidence 45677777777777777777777777777777 33110000 0011233344444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh
Q 036589 55 DLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT 134 (176)
Q Consensus 55 ~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 134 (176)
++||++|++.|++++|.++|++|.. +|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++
T Consensus 263 n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 263 CALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 4444444444555555554444432 24445555555555555555555555555555555555555555555555
Q ss_pred cCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589 135 CGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 135 ~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 174 (176)
.|++++|.+++.+|.+.|+. ||..+|++||++|+++|++
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~-~d~~~~~~Li~~y~k~G~~ 376 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFP-LDIVANTALVDLYSKWGRM 376 (697)
T ss_pred ccchHHHHHHHHHHHHhCCC-CCeeehHHHHHHHHHCCCH
Confidence 55555555555555555555 5555555555555555544
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=1.3e-29 Score=210.09 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=106.2
Q ss_pred CCCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 80 (176)
Q Consensus 1 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 80 (176)
|..|+.++||.+|.+|++.|++++|+++|++| .. .++.||..+|+.+|.+|++.+++..+.+++..|.+.
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M-~~---------~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 216 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRM-LW---------AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHH-HH---------cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence 67889999999999999999999999999999 44 356667776666666666666666666666666655
Q ss_pred CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHH
Q 036589 81 TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLC 160 (176)
Q Consensus 81 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t 160 (176)
|+.||..+||+||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+. ||..|
T Consensus 217 -g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~-Pd~~t 290 (857)
T PLN03077 217 -GFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVD-PDLMT 290 (857)
T ss_pred -CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CChhH
Confidence 666666666666666666666666666666665 255556666666666666666666666666655555 55555
Q ss_pred HHHHHHHhhccccC
Q 036589 161 SNLKIIMNDSQVRV 174 (176)
Q Consensus 161 ~~~li~~~~~~g~~ 174 (176)
|+.+|.+|++.|++
T Consensus 291 y~~ll~a~~~~g~~ 304 (857)
T PLN03077 291 ITSVISACELLGDE 304 (857)
T ss_pred HHHHHHHHHhcCCh
Confidence 55555555555543
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.71 E-value=4.2e-17 Score=88.78 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=39.1
Q ss_pred ccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589 120 RTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS 170 (176)
Q Consensus 120 p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 170 (176)
||..+||++|++|++.|++++|.++|++|.+.|+. ||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~-P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIK-PDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777 777777777777764
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.68 E-value=9.3e-17 Score=87.42 Aligned_cols=50 Identities=30% Similarity=0.482 Sum_probs=29.5
Q ss_pred CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh
Q 036589 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT 134 (176)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 134 (176)
||.++||++|.+|++.|++++|+++|++|.+.|++||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 45555666666666666666666666666655666666666666655543
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.44 E-value=7e-12 Score=95.97 Aligned_cols=154 Identities=9% Similarity=-0.030 Sum_probs=94.8
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE- 86 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~- 86 (176)
.+..+...|.+.|++++|..+|+++ ... .+++..++..++..+.+.|++++|.+.++.+.+. +..+.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~-l~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 176 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQL-VDE----------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLR 176 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-HcC----------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcch
Confidence 3455566666667777777777666 221 1235566777777777777777777777777655 32221
Q ss_pred ---hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHH
Q 036589 87 ---EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163 (176)
Q Consensus 87 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~ 163 (176)
...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+.. ....+++.
T Consensus 177 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~ 254 (389)
T PRK11788 177 VEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE-YLSEVLPK 254 (389)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh-hHHHHHHH
Confidence 1234455566667777777777777766432 223445666667777777777777777777665433 33456677
Q ss_pred HHHHhhccccCC
Q 036589 164 KIIMNDSQVRVT 175 (176)
Q Consensus 164 li~~~~~~g~~~ 175 (176)
+..+|...|+++
T Consensus 255 l~~~~~~~g~~~ 266 (389)
T PRK11788 255 LMECYQALGDEA 266 (389)
T ss_pred HHHHHHHcCCHH
Confidence 777777766654
No 10
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=2.5e-12 Score=96.50 Aligned_cols=118 Identities=12% Similarity=0.100 Sum_probs=107.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 129 (176)
+..+|.+||.++|+--..+.|.++|++..+. ..+.+..+||.+|.+- .+.....+..+|.+..+.||..|||+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~----S~~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGAS----SYSVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHH----HhhccHHHHHHHHHhhcCCchHhHHHHH
Confidence 7789999999999999999999999999999 7899999999999874 3455588899999999999999999999
Q ss_pred HHHHhcCcHHH----HHHHHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589 130 NALLTCGKLDR----MKELFISFNLKAIAVLDGLCSNLKIIMNDSQVR 173 (176)
Q Consensus 130 ~~~~~~g~~~~----a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 173 (176)
.+..+-|+++. |.+++.+|++-|+. |...+|-.+|..+++.++
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVe-PsLsSyh~iik~f~re~d 327 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVE-PSLSSYHLIIKNFKRESD 327 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCC-cchhhHHHHHHHhcccCC
Confidence 99999998764 66889999999999 999999999999988765
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.41 E-value=1.4e-11 Score=94.26 Aligned_cols=142 Identities=10% Similarity=-0.085 Sum_probs=85.7
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF 90 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 90 (176)
.+...+.+.|++++|.+.|+++ .+. .+.+...+..+...+.+.|++++|.+.++++... +......++
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~a-l~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~ 252 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKA-LAA----------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVL 252 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH-HhH----------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHH
Confidence 3444445556666666666555 111 1123445556666666777777777777776654 222224456
Q ss_pred HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~ 169 (176)
+.+..+|.+.|++++|.+.++++.+.. |+...++.+...+.+.|++++|.++|+++.+. . |+..+++.++..+.
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~-P~~~~~~~l~~~~~ 326 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--H-PSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--C-cCHHHHHHHHHHhh
Confidence 666777777777777777777766542 55555566677777777777777777766554 3 66666766666555
No 12
>PF12854 PPR_1: PPR repeat
Probab=99.28 E-value=6e-12 Score=62.37 Aligned_cols=32 Identities=28% Similarity=0.544 Sum_probs=16.1
Q ss_pred CCCCchHHHHHHHHHHHhccCHHHHHHHHHhc
Q 036589 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113 (176)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 113 (176)
|+.||.+|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.26 E-value=2.9e-10 Score=94.58 Aligned_cols=151 Identities=11% Similarity=0.044 Sum_probs=81.0
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
.+..+...|.+.|++++|..+++.+ .. ..+.+...|..+..++.+.|++++|...|+++.+. . ..+.
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~ 635 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEA-AD----------AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-Q-PDSA 635 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-HH----------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCCh
Confidence 4445555556666666666666555 21 12234556666666666666666666666666544 1 2233
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM 167 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~ 167 (176)
..+..+..+|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.++++.+.+... ++...+..+...
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~ 712 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP--KAALGFELEGDL 712 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--CChHHHHHHHHH
Confidence 445556666666666666666666555332 22345555555555555555555555555554443 244445555555
Q ss_pred hhccccC
Q 036589 168 NDSQVRV 174 (176)
Q Consensus 168 ~~~~g~~ 174 (176)
+.+.|++
T Consensus 713 ~~~~g~~ 719 (899)
T TIGR02917 713 YLRQKDY 719 (899)
T ss_pred HHHCCCH
Confidence 5554443
No 14
>PF12854 PPR_1: PPR repeat
Probab=99.26 E-value=1.2e-11 Score=61.28 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=26.5
Q ss_pred CCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589 116 FNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149 (176)
Q Consensus 116 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~ 149 (176)
.|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888887773
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.24 E-value=3.7e-10 Score=93.88 Aligned_cols=154 Identities=12% Similarity=0.040 Sum_probs=103.6
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI 84 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~ 84 (176)
+..++..+...+.+.|++++|.+.++.+. . ..+.+...+..+...|.+.|++++|...|+++.+. . +
T Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~-p 801 (899)
T TIGR02917 735 SSQNAIKLHRALLASGNTAEAVKTLEAWL-K----------THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-A-P 801 (899)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHH-H----------hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-C-C
Confidence 33444455555555566666655555551 1 12335566666666777777777777777777655 2 3
Q ss_pred CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK 164 (176)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l 164 (176)
.+...++.+...+.+.|+ .+|+..+++..+.. +-+...+..+...+...|++++|.++|+++.+.+.. +..++..+
T Consensus 802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l 877 (899)
T TIGR02917 802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE--AAAIRYHL 877 (899)
T ss_pred CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHH
Confidence 455666667777777777 66777777665432 224455667778888899999999999999887764 88899999
Q ss_pred HHHhhccccCC
Q 036589 165 IIMNDSQVRVT 175 (176)
Q Consensus 165 i~~~~~~g~~~ 175 (176)
..++.+.|+.+
T Consensus 878 ~~~~~~~g~~~ 888 (899)
T TIGR02917 878 ALALLATGRKA 888 (899)
T ss_pred HHHHHHcCCHH
Confidence 99999998865
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=1.5e-10 Score=87.10 Aligned_cols=130 Identities=12% Similarity=0.151 Sum_probs=109.2
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI 84 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~ 84 (176)
++.|+.+||.++++-...++|.+++++. .+ ...+.+..+||.+|.+-.-.. ..++..+|... .+.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~-~~---------~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq-km~ 270 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEH-RA---------AKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ-KMT 270 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHH-HH---------hhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh-hcC
Confidence 5679999999999999999999999998 33 345678899999987765433 37889999999 899
Q ss_pred CchHHHHHHHHHHHhccCHHHH----HHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHH-HHHHHHHHH
Q 036589 85 PEEIIFCNVISFYGRARLLEHA----LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR-MKELFISFN 149 (176)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~a----~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~-a~~l~~~m~ 149 (176)
||..|||+++.+.++.|+++.| .+++.+|++-|+.|...+|..+|.-+++.++..+ |..++.+..
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 9999999999999999988654 5788899999999999999999999999887644 555555543
No 17
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.14 E-value=1.4e-09 Score=88.03 Aligned_cols=164 Identities=12% Similarity=-0.016 Sum_probs=122.4
Q ss_pred CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCC---------------CCCCCCCcHHHHHHHHHHHHhcCCh
Q 036589 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAP---------------PLKPFRYNLLHYDLIITKLGRAKMF 67 (176)
Q Consensus 3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~y~~li~~~~~~g~~ 67 (176)
.|+++||.++|.-||..|+++.|- +|.-| +...-..+. ...+-.|...+|..++.+|..+|++
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDl 99 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDL 99 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccch
Confidence 589999999999999999999998 88887 333222221 1233468899999999999999985
Q ss_pred H---HHHHHHHHHhhc----------------------------------------------------------------
Q 036589 68 D---EMQQILHQLKHD---------------------------------------------------------------- 80 (176)
Q Consensus 68 ~---~a~~~~~~m~~~---------------------------------------------------------------- 80 (176)
. .+++.+..+..+
T Consensus 100 i~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLr 179 (1088)
T KOG4318|consen 100 ILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLR 179 (1088)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHH
Confidence 4 444423332222
Q ss_pred -----------------CCC-CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHH
Q 036589 81 -----------------TRV-IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142 (176)
Q Consensus 81 -----------------~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 142 (176)
... .|+..+|.+++.+-..+|+.+.|..++.+|.+.|++.+.+-|..||-+ .++..-++
T Consensus 180 qnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e 256 (1088)
T KOG4318|consen 180 QNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFE 256 (1088)
T ss_pred HhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHH
Confidence 111 366677777778888888888888888888888888888888888766 77777888
Q ss_pred HHHHHHHhccccccchHHHHHHHHHhhccc
Q 036589 143 ELFISFNLKAIAVLDGLCSNLKIIMNDSQV 172 (176)
Q Consensus 143 ~l~~~m~~~~~~~p~~~t~~~li~~~~~~g 172 (176)
.+++.|.+.|+. |+..|+...+..+.+.|
T Consensus 257 ~vlrgmqe~gv~-p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 257 FVLRGMQEKGVQ-PGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHHHhcCC-CCcchhHHHHHhhhcch
Confidence 888888888888 88888888777776644
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=5.2e-09 Score=73.74 Aligned_cols=118 Identities=12% Similarity=-0.002 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHH
Q 036589 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131 (176)
Q Consensus 52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 131 (176)
..+..+...+...|++++|.+.+++.............+..+..++.+.|++++|...|++..+.. +.+...+..+...
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHH
Confidence 344444444455555555555555544331111222333444445555555555555555544322 1123344455555
Q ss_pred HHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccc
Q 036589 132 LLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQV 172 (176)
Q Consensus 132 ~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g 172 (176)
+...|++++|.+.+++..+. .+ .+...+..+...+...|
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 217 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQT-YN-QTAESLWLGIRIARALG 217 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CC-CCHHHHHHHHHHHHHHh
Confidence 55555555555555555443 12 23334444444444433
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.11 E-value=6.2e-10 Score=81.82 Aligned_cols=157 Identities=10% Similarity=-0.064 Sum_probs=104.5
Q ss_pred CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589 4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV 83 (176)
Q Consensus 4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~ 83 (176)
+++..+...+..+.+.++++++.++++.+ ... ...+.+...|..+...+.+.|+.++|.+.+++..+.
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~-~~~--------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--- 175 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKL-EEL--------PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--- 175 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHH-HH---------T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHH-Hhc--------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Confidence 45666777788888888888888888886 322 344567888888888888899999999999888876
Q ss_pred CC-chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHH
Q 036589 84 IP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN 162 (176)
Q Consensus 84 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~ 162 (176)
.| |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...|++....... |.....
T Consensus 176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~--d~~~~~ 252 (280)
T PF13429_consen 176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD--DPLWLL 252 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT---HHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc--cccccc
Confidence 34 46667788888888888888888887776443 456677788888889999999999999998775554 788888
Q ss_pred HHHHHhhccccCC
Q 036589 163 LKIIMNDSQVRVT 175 (176)
Q Consensus 163 ~li~~~~~~g~~~ 175 (176)
.+.+++...|+.+
T Consensus 253 ~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 253 AYADALEQAGRKD 265 (280)
T ss_dssp HHHHHHT------
T ss_pred ccccccccccccc
Confidence 8888888888865
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.07 E-value=1.6e-08 Score=71.19 Aligned_cols=153 Identities=11% Similarity=0.005 Sum_probs=122.9
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
.+..+...+...|++++|.+.|++. ... .+.+...+..+...+...|++++|.+.+++..+. . ..+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~-l~~----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-~~~~ 99 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKA-LEH----------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-N-PNNG 99 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-HHh----------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-CCCH
Confidence 4667788899999999999999987 221 1235678888999999999999999999999876 2 3345
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCC-CccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHH
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNV-QRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII 166 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~ 166 (176)
..+..+...+...|++++|.+.|++..+... ......+..+...+...|++++|.+.|.+..+.... +...+..+..
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~la~ 177 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ--RPESLLELAE 177 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--ChHHHHHHHH
Confidence 6777889999999999999999999886432 224456777888899999999999999998876543 5667888888
Q ss_pred HhhccccCC
Q 036589 167 MNDSQVRVT 175 (176)
Q Consensus 167 ~~~~~g~~~ 175 (176)
.+...|+++
T Consensus 178 ~~~~~~~~~ 186 (234)
T TIGR02521 178 LYYLRGQYK 186 (234)
T ss_pred HHHHcCCHH
Confidence 888888764
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.93 E-value=8.1e-08 Score=78.08 Aligned_cols=152 Identities=9% Similarity=-0.123 Sum_probs=118.7
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
.|+.+-..+...|++++|+..|+.. .+. .+-....|..+...+...|++++|...|++..+.. .-+.
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~ka-l~l----------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~ 399 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKS-IEL----------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDP 399 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHc----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH
Confidence 4666667777889999999999987 221 12246678888888999999999999999987662 2345
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM 167 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~ 167 (176)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++..+.... +...|+.+-..
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~ 476 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE--APDVYNYYGEL 476 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Confidence 678888889999999999999999888654 335666777888888999999999999998775433 57788888888
Q ss_pred hhccccCC
Q 036589 168 NDSQVRVT 175 (176)
Q Consensus 168 ~~~~g~~~ 175 (176)
+...|+++
T Consensus 477 ~~~~g~~~ 484 (615)
T TIGR00990 477 LLDQNKFD 484 (615)
T ss_pred HHHccCHH
Confidence 88888764
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.93 E-value=4.8e-09 Score=77.13 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589 6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP 85 (176)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~ 85 (176)
+..+..++.. ...+++++|.++++.. -+. .+++..+..++..+.+.++++++.++++.+........
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~-~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKA-YER-----------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD 144 (280)
T ss_dssp -----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T
T ss_pred cccccccccc-cccccccccccccccc-ccc-----------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC
Confidence 4445555555 5677777777776665 221 23566677788888888888888888888776534566
Q ss_pred chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589 86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK 164 (176)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l 164 (176)
+...|..+...+.+.|+.++|++.|++..+.. | |....+.++..+...|+.+++.+++....+.. + .|...|..+
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~l 220 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-P-DDPDLWDAL 220 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H-TSCCHCHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c-CHHHHHHHH
Confidence 77778888888888888888888888887553 5 46777888888888888888888888876655 3 466677777
Q ss_pred HHHhhccccC
Q 036589 165 IIMNDSQVRV 174 (176)
Q Consensus 165 i~~~~~~g~~ 174 (176)
..+|...|+.
T Consensus 221 a~~~~~lg~~ 230 (280)
T PF13429_consen 221 AAAYLQLGRY 230 (280)
T ss_dssp HHHHHHHT-H
T ss_pred HHHhcccccc
Confidence 7777777664
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.93 E-value=1.1e-07 Score=77.70 Aligned_cols=153 Identities=12% Similarity=0.008 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589 7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE 86 (176)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~ 86 (176)
..+..+...+.+.|++++|...|++.. .. .+.+...+..+...+...|++++|...++.+... ...+.
T Consensus 111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al-~l----------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-~P~~~ 178 (656)
T PRK15174 111 EDVLLVASVLLKSKQYATVADLAEQAW-LA----------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-VPPRG 178 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh----------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-CCCCH
Confidence 345555666666777777777776662 21 1224556666666677777777777766666544 22221
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHH
Q 036589 87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII 166 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~ 166 (176)
. .+..+ ..+...|++++|+..++.+.+..-.++...+..+...+...|++++|.+.|++..+.... +...+..+-.
T Consensus 179 ~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~--~~~~~~~Lg~ 254 (656)
T PRK15174 179 D-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD--GAALRRSLGL 254 (656)
T ss_pred H-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence 1 12112 235566666666666666554322223333344445566666666666666666654432 4555555666
Q ss_pred HhhccccCC
Q 036589 167 MNDSQVRVT 175 (176)
Q Consensus 167 ~~~~~g~~~ 175 (176)
.|...|+++
T Consensus 255 ~l~~~G~~~ 263 (656)
T PRK15174 255 AYYQSGRSR 263 (656)
T ss_pred HHHHcCCch
Confidence 666666543
No 24
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.88 E-value=3.7e-09 Score=52.44 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccccc
Q 036589 124 SLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
+||++|.+|++.|++++|.++|++|.+.|+. ||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~-p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIE-PD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CC
Confidence 5666666666666666666666666666666 65
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=98.86 E-value=1.4e-07 Score=75.79 Aligned_cols=151 Identities=15% Similarity=0.008 Sum_probs=103.3
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI 84 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~ 84 (176)
++..+..+-..+...|++++|...|++. ... .+.+...|..+..++...|++++|...+++..+..
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~A-l~l----------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--- 402 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQA-NLL----------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--- 402 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHH-HHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---
Confidence 3445666667778889999999999887 221 12256677888888899999999999999988762
Q ss_pred Cch-HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHH
Q 036589 85 PEE-IIFCNVISFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN 162 (176)
Q Consensus 85 ~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~ 162 (176)
|+. ..+..++..+...|++++|+..+++..+.. .| +...+..+-..+...|++++|.+.+.++...... +....+
T Consensus 403 P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~--~~~~~~ 479 (553)
T PRK12370 403 PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT--GLIAVN 479 (553)
T ss_pred CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch--hHHHHH
Confidence 322 222334445667889999999998876443 23 4445667778888899999999999887554222 334445
Q ss_pred HHHHHhhccc
Q 036589 163 LKIIMNDSQV 172 (176)
Q Consensus 163 ~li~~~~~~g 172 (176)
.+...|+..|
T Consensus 480 ~l~~~~~~~g 489 (553)
T PRK12370 480 LLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccH
Confidence 5555555544
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.86 E-value=1.1e-07 Score=77.84 Aligned_cols=113 Identities=12% Similarity=0.032 Sum_probs=58.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHH----HHHHHHhcccCCCCccHhHHHHHHHHHH
Q 036589 58 ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH----ALQVFDEMPSFNVQRTVKSLNTLLNALL 133 (176)
Q Consensus 58 i~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 133 (176)
..++.+.|++++|...+++..+. . .-+...+..+...|...|++++ |+..|++..+.. +.+...+..+...+.
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~-~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALAR-G-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444555555555555555543 1 1223344445555555555553 555555555332 223445555666666
Q ss_pred hcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 134 TCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 134 ~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
+.|++++|...+++..+.... +...+..+...|.+.|+++
T Consensus 296 ~~g~~~eA~~~l~~al~l~P~--~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLATHPD--LPYVRAMYARALRQVGQYT 335 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHH
Confidence 666666666666666554433 3444555556666665543
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.83 E-value=1.3e-07 Score=76.83 Aligned_cols=153 Identities=8% Similarity=-0.031 Sum_probs=71.8
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
.|..+-..+...|++++|+..|++. ... .+.+...|..+...+.+.|++++|...|++..+. ..-+.
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~ka-l~l----------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~ 467 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKS-IDL----------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAP 467 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHc----------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCh
Confidence 4444444555555555555555554 111 1123444444555555555555555555555543 12233
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-----cH-hHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHH
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQR-----TV-KSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCS 161 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~-~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~ 161 (176)
..++.+...+...|++++|+..|++..+..-.. +. ..++..+..+...|++++|.+++++..+.... +...+
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~--~~~a~ 545 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE--CDIAV 545 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--cHHHH
Confidence 445555555555666666666655544321100 00 01111122223345666666666655544322 33456
Q ss_pred HHHHHHhhccccCC
Q 036589 162 NLKIIMNDSQVRVT 175 (176)
Q Consensus 162 ~~li~~~~~~g~~~ 175 (176)
..+...+.+.|+++
T Consensus 546 ~~la~~~~~~g~~~ 559 (615)
T TIGR00990 546 ATMAQLLLQQGDVD 559 (615)
T ss_pred HHHHHHHHHccCHH
Confidence 66666666666543
No 28
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.83 E-value=4.1e-09 Score=52.27 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRT 121 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 121 (176)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666655
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.79 E-value=3.2e-07 Score=77.69 Aligned_cols=107 Identities=10% Similarity=0.033 Sum_probs=59.8
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHH
Q 036589 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142 (176)
Q Consensus 63 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 142 (176)
..|++++|...+++..+. .|+...+..+..++.+.|++++|+..|++..+.. +-+...++.+-..+...|++++|+
T Consensus 588 ~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred hCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 335555555555555533 2345555556666666666666666666655443 223444555555666666666666
Q ss_pred HHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 143 ELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 143 ~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
+.|++..+..+. +...+..+-.++...|+++
T Consensus 664 ~~l~~AL~l~P~--~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 664 EMLERAHKGLPD--DPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHH
Confidence 666666554443 4555666666666665543
No 30
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.78 E-value=1.5e-08 Score=50.05 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 123 KSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 123 ~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
.+||++|.+|++.|+++.|.++|++|.+.|+.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 45666666666666666666666666666665
No 31
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.77 E-value=2e-07 Score=71.67 Aligned_cols=125 Identities=11% Similarity=0.125 Sum_probs=107.4
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhH
Q 036589 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124 (176)
Q Consensus 46 ~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 124 (176)
+.+.+.....++++.+....+++.+..++...+.... ...-..|..++|+.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3455778888899999999999999999999887722 233445567999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcc
Q 036589 125 LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQ 171 (176)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~ 171 (176)
||.||+.+.+.|++..|.++...|...+.- .+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~-~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEF-DNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHHh
Confidence 999999999999999999999999877776 6778888878777665
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.75 E-value=5.7e-07 Score=76.24 Aligned_cols=145 Identities=6% Similarity=-0.143 Sum_probs=111.2
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN 92 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~ 92 (176)
...+...|++++|...|+.+ .. .+|+...+..+..++.+.|++++|.+.+++..+. . ..+...+..
T Consensus 516 A~al~~~Gr~eeAi~~~rka-~~-----------~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~ 581 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKI-SL-----------HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWW 581 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHH-hc-----------cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHH
Confidence 33445789999999999887 22 1234445666778888999999999999999876 3 223333334
Q ss_pred HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccc
Q 036589 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQV 172 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g 172 (176)
+...+.+.|++++|+..|++..+.. |+...|..+...+.+.|++++|.+.|++..+..+. +...++.+-..+...|
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd--~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN--NSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCC
Confidence 4445556699999999999988654 67888999999999999999999999999888765 6778888888888888
Q ss_pred cCC
Q 036589 173 RVT 175 (176)
Q Consensus 173 ~~~ 175 (176)
+++
T Consensus 658 ~~e 660 (987)
T PRK09782 658 DIA 660 (987)
T ss_pred CHH
Confidence 764
No 33
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.75 E-value=1.2e-08 Score=50.37 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 120 (176)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555555544
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=98.70 E-value=8.6e-07 Score=71.29 Aligned_cols=141 Identities=13% Similarity=-0.090 Sum_probs=106.9
Q ss_pred ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 036589 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG 98 (176)
Q Consensus 19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~ 98 (176)
.+++++|...+++. .+. -+-+...|..+...+...|++++|...|++..+. . +-+...+..+...+.
T Consensus 317 ~~~~~~A~~~~~~A-l~l----------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-~-P~~~~a~~~lg~~l~ 383 (553)
T PRK12370 317 QNAMIKAKEHAIKA-TEL----------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL-S-PISADIKYYYGWNLF 383 (553)
T ss_pred chHHHHHHHHHHHH-Hhc----------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHH
Confidence 34578999999987 332 1236778888888999999999999999999976 2 223456777889999
Q ss_pred hccCHHHHHHHHHhcccCCCCccH-hHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 99 RARLLEHALQVFDEMPSFNVQRTV-KSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 99 ~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
..|++++|+..|++..+.. |+. ..+..++..+...|++++|.+.+++..+...+ -+...+..+-.+|...|+.+
T Consensus 384 ~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p-~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 384 MAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQ-DNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred HCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccc-cCHHHHHHHHHHHHhCCCHH
Confidence 9999999999999998664 442 23344455577789999999999998765433 24556777778888888865
No 35
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.67 E-value=3.9e-07 Score=67.28 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=98.9
Q ss_pred HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHH
Q 036589 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV 93 (176)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l 93 (176)
..+...|++++|+++++.. . +.......+..|.+.++++.|.+.++.|.+. ..| .+...+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~--------------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD-~~l~qL 169 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--G--------------SLELLALAVQILLKMNRPDLAEKELKNMQQI---DED-SILTQL 169 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--T--------------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCC-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc--C--------------cccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCc-HHHHHH
Confidence 4566679999999988765 1 5677778899999999999999999999866 233 333445
Q ss_pred HHHHHh----ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589 94 ISFYGR----ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169 (176)
Q Consensus 94 i~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~ 169 (176)
..++.. .+.+.+|..+|+++.+ ...+++.+.|.+.-+....|++++|.+++.+..+.... +..|...+|.+..
T Consensus 170 a~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~--~~d~LaNliv~~~ 246 (290)
T PF04733_consen 170 AEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN--DPDTLANLIVCSL 246 (290)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC--CHHHHHHHHHHHH
Confidence 555543 3368999999999874 35678899999999999999999999999998776654 5556555665554
Q ss_pred cccc
Q 036589 170 SQVR 173 (176)
Q Consensus 170 ~~g~ 173 (176)
-.|+
T Consensus 247 ~~gk 250 (290)
T PF04733_consen 247 HLGK 250 (290)
T ss_dssp HTT-
T ss_pred HhCC
Confidence 4443
No 36
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.67 E-value=3.2e-08 Score=47.65 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589 124 SLNTLLNALLTCGKLDRMKELFISFNLKA 152 (176)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 152 (176)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666654
No 37
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.66 E-value=8.2e-07 Score=55.42 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhcc--------CHHHHHHHHHhcccCCCCccHh
Q 036589 53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRV-IPEEIIFCNVISFYGRAR--------LLEHALQVFDEMPSFNVQRTVK 123 (176)
Q Consensus 53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~ 123 (176)
+-...|..|...+++.....+|+.+++. |+ .|+..+|+.++.+-++.. .+-+.+.+|+.|...+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 4455566666678888888888888888 77 788888888887776643 2445566777777777777777
Q ss_pred HHHHHHHHHHh
Q 036589 124 SLNTLLNALLT 134 (176)
Q Consensus 124 ~~~~ll~~~~~ 134 (176)
+||+++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 77777776655
No 38
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.59 E-value=5.3e-08 Score=46.87 Aligned_cols=29 Identities=38% Similarity=0.520 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPSFN 117 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 117 (176)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=3.1e-07 Score=72.55 Aligned_cols=168 Identities=13% Similarity=0.106 Sum_probs=104.0
Q ss_pred CCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCC--------C-------------CCCCCCCCcHHHHHHH---
Q 036589 2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTE--------A-------------PPLKPFRYNLLHYDLI--- 57 (176)
Q Consensus 2 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~-------------~~~~~~~~~~~~y~~l--- 57 (176)
.+-+|.+|-++-+.|.-+++++.|++.|++. -.-..-. + .-...+..|+..||+.
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RA-iQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl 495 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRA-IQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL 495 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHh-hccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence 4567889999999999999999999999997 2221000 0 0122233344443332
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc
Q 036589 58 ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137 (176)
Q Consensus 58 i~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 137 (176)
.-.|.|.++++.|+-.|+...+-. .-+.+....+...+-+.|+.++|+++|++..-.. .-|+.+----...+...++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcc
Confidence 334445555566655555555331 2244455556666677777777777777665333 2355555555666677777
Q ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 138 LDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 138 ~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
+++|++.++++++.-+. +...|-.+...|-+.|+.+
T Consensus 573 ~~eal~~LEeLk~~vP~--es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 573 YVEALQELEELKELVPQ--ESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred hHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHccch
Confidence 88888888887776544 5667777777777766543
No 40
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.58 E-value=1.7e-06 Score=54.06 Aligned_cols=79 Identities=8% Similarity=0.026 Sum_probs=68.9
Q ss_pred HHHHHHHhccCHHHHHHHHHhcccCCC-CccHhHHHHHHHHHHhcCc--------HHHHHHHHHHHHhccccccchHHHH
Q 036589 92 NVISFYGRARLLEHALQVFDEMPSFNV-QRTVKSLNTLLNALLTCGK--------LDRMKELFISFNLKAIAVLDGLCSN 162 (176)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~--------~~~a~~l~~~m~~~~~~~p~~~t~~ 162 (176)
.-|.-+...+++...-.+|+.+++.|+ .|+...||.+|.+.+++.. +-+.+.+|.+|...++. |+..||+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lK-P~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLK-PNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccC-CcHHHHH
Confidence 455566666999999999999999999 9999999999999988643 55678999999999999 9999999
Q ss_pred HHHHHhhcc
Q 036589 163 LKIIMNDSQ 171 (176)
Q Consensus 163 ~li~~~~~~ 171 (176)
.++..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999988653
No 41
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.54 E-value=1e-05 Score=53.71 Aligned_cols=109 Identities=8% Similarity=-0.074 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 130 (176)
+..+......+...|++++|...|+..... . ..+...|..+-.++.+.|++++|+..|+...+.. +.+...+..+-.
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~ 100 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMA-Q-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 334556788889999999999999999876 2 3467788889999999999999999999999654 457888999999
Q ss_pred HHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589 131 ALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK 164 (176)
Q Consensus 131 ~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l 164 (176)
++...|++++|...|+...+.... +...|...
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~p~--~~~~~~~~ 132 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMSYA--DASWSEIR 132 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHH
Confidence 999999999999999998876554 44444433
No 42
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.50 E-value=1.1e-05 Score=70.19 Aligned_cols=146 Identities=10% Similarity=-0.010 Sum_probs=111.4
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF 90 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 90 (176)
.+.+.+...|+.++|.++++.- +. +...+..+...+.+.|++++|...|++..+. . +-+...+
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~~-p~--------------~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~-P~~~~a~ 640 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQQ-PP--------------STRIDLTLADWAQQRGDYAAARAAYQRVLTR-E-PGNADAR 640 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHhC-CC--------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCCHHHH
Confidence 3456788899999999998843 22 4556677899999999999999999999987 2 3356788
Q ss_pred HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc-c---chHHHHHHHH
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV-L---DGLCSNLKII 166 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~-p---~~~t~~~li~ 166 (176)
..+...|...|++++|++.|+...+.. +.+...+..+...+...|++++|.++|+.+....... | +...+..+..
T Consensus 641 ~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~ 719 (1157)
T PRK11447 641 LGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAAR 719 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHH
Confidence 889999999999999999999887542 2345556677788899999999999999987653320 2 2345555566
Q ss_pred HhhccccC
Q 036589 167 MNDSQVRV 174 (176)
Q Consensus 167 ~~~~~g~~ 174 (176)
.+...|+.
T Consensus 720 ~~~~~G~~ 727 (1157)
T PRK11447 720 FEAQTGQP 727 (1157)
T ss_pred HHHHcCCH
Confidence 66666654
No 43
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.46 E-value=1.5e-05 Score=66.54 Aligned_cols=147 Identities=7% Similarity=-0.035 Sum_probs=110.5
Q ss_pred HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHH
Q 036589 10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEII 89 (176)
Q Consensus 10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~ 89 (176)
...+......|+.++|+++|...... -+.+...+..+..++.+.|++++|.++|++..+.. +.+...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~-----------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a 85 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVH-----------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDY 85 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 44567778899999999999988321 13356678889999999999999999999988662 223445
Q ss_pred HHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169 (176)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~ 169 (176)
+..+...+.+.|++++|+..+++..+.. +.+.. +..+...+...|+.++|+..+++..+..+. +...+..+..++.
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~--~~~~~~~la~~l~ 161 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ--TQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence 6678888899999999999999988652 33445 778888888999999999999999887665 4455555666665
Q ss_pred cccc
Q 036589 170 SQVR 173 (176)
Q Consensus 170 ~~g~ 173 (176)
..|+
T Consensus 162 ~~~~ 165 (765)
T PRK10049 162 NNRL 165 (765)
T ss_pred HCCC
Confidence 5444
No 44
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=3.1e-06 Score=62.43 Aligned_cols=148 Identities=6% Similarity=-0.049 Sum_probs=121.1
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF 90 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 90 (176)
.+-+.|.+.|.+.+|.+.|+.-.+. .|-+.+|-.|-..|.+...+..|..++.+-... +.-|+...
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l 293 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL 293 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh
Confidence 4667889999999999999886233 345777878999999999999999999998876 33344444
Q ss_pred HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS 170 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 170 (176)
.-..+.+...++.++|.++|+...+.. ..++....++-..|.-.++.+-|++.+++..+.|+. +..-|+.+--+|.-
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~--speLf~NigLCC~y 370 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ--SPELFCNIGLCCLY 370 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--ChHHHhhHHHHHHh
Confidence 567788888999999999999888543 457777778888999999999999999999999998 88888888877777
Q ss_pred cccCC
Q 036589 171 QVRVT 175 (176)
Q Consensus 171 ~g~~~ 175 (176)
.+++|
T Consensus 371 aqQ~D 375 (478)
T KOG1129|consen 371 AQQID 375 (478)
T ss_pred hcchh
Confidence 77665
No 45
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.46 E-value=1.5e-06 Score=68.46 Aligned_cols=165 Identities=15% Similarity=0.044 Sum_probs=119.0
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCC--CC
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLL-HYDLIITKLGRAKMFDEMQQILHQLKHDTR--VI 84 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~~g--~~ 84 (176)
+++.|-.+|.+.|++++|...+++...-.. .. .....|.+. .++.+...|+..+++++|..+++...+..- +.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~---~~-~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYE---KL-LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHH---Hh-hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 677788899999999988777766411100 00 011123333 467778888899999999998887665411 22
Q ss_pred C----chHHHHHHHHHHHhccCHHHHHHHHHhcccC----C---CCccHhHHHHHHHHHHhcCcHHHHHHHHHHH----H
Q 036589 85 P----EEIIFCNVISFYGRARLLEHALQVFDEMPSF----N---VQRTVKSLNTLLNALLTCGKLDRMKELFISF----N 149 (176)
Q Consensus 85 ~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~---~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m----~ 149 (176)
+ ...+++.|-..|...|++.+|+++|++..+. + ..-....+|.|-..|.+.+.+.+|.++|.+- +
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 2468899999999999999999999987631 1 1223567888899999999999999999874 4
Q ss_pred hccccccc-hHHHHHHHHHhhccccCCC
Q 036589 150 LKAIAVLD-GLCSNLKIIMNDSQVRVTG 176 (176)
Q Consensus 150 ~~~~~~p~-~~t~~~li~~~~~~g~~~~ 176 (176)
..|..+|+ ..+|..|...|.+.|++++
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~ 468 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEA 468 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHH
Confidence 45555444 6789999999999999863
No 46
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.45 E-value=1.2e-05 Score=69.99 Aligned_cols=146 Identities=11% Similarity=-0.022 Sum_probs=89.7
Q ss_pred HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHH
Q 036589 10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEII 89 (176)
Q Consensus 10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~ 89 (176)
..+...+...|++++|++.|++.. .. .+-+...+..+...|.+.|++++|...++++.+...-.|+ .
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al-~~----------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~--~ 531 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRL-AL----------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE--Q 531 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-Hh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--H
Confidence 345567778999999999999972 21 1225667788899999999999999999998765222221 1
Q ss_pred HHHH--------------------------------------------HHHHHhccCHHHHHHHHHhcccCCCCccHhHH
Q 036589 90 FCNV--------------------------------------------ISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125 (176)
Q Consensus 90 ~~~l--------------------------------------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 125 (176)
+..+ ...+...|+.++|+++++. .+.+...+
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~ 606 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRID 606 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHH
Confidence 1111 2223333444444444331 12333445
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 126 NTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 126 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
..+...+.+.|++++|.+.|++..+..+. +...+..+...|...|+++
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~~~P~--~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLTREPG--NADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHH
Confidence 55666666777777777777776665443 5566666666666666543
No 47
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.45 E-value=1e-05 Score=57.92 Aligned_cols=158 Identities=8% Similarity=-0.120 Sum_probs=111.3
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
.+..+...+.+.|++++|...|+++ .... +.-+.....+..+..++.+.|++++|...++++.+...-.+..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~-~~~~-------p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEAL-ESRY-------PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-------CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 4556677888999999999999987 3321 1111123467778899999999999999999998763222221
Q ss_pred -HHHHHHHHHHHhc--------cCHHHHHHHHHhcccCCCCccHh-HH-----------------HHHHHHHHhcCcHHH
Q 036589 88 -IIFCNVISFYGRA--------RLLEHALQVFDEMPSFNVQRTVK-SL-----------------NTLLNALLTCGKLDR 140 (176)
Q Consensus 88 -~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~-~~-----------------~~ll~~~~~~g~~~~ 140 (176)
..+..+-.++... |++++|.+.|+++.+.. |+.. .+ ..+...+.+.|++.+
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 2344455555544 78999999999987543 3321 11 134566788899999
Q ss_pred HHHHHHHHHhcccccc-chHHHHHHHHHhhccccCC
Q 036589 141 MKELFISFNLKAIAVL-DGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 141 a~~l~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~ 175 (176)
|...+.+..+.....| ....+..+..++...|+++
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence 9999999887643212 4678889999999998875
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.6e-06 Score=63.45 Aligned_cols=155 Identities=12% Similarity=0.028 Sum_probs=109.9
Q ss_pred CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036589 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR 82 (176)
Q Consensus 3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g 82 (176)
|-.+.|..++-+.|+-.+++++|...|++..+- .+-....|+.|.+-|...++...|..-|....+-
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL-----------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-- 393 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKL-----------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-- 393 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhc-----------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--
Confidence 345677788888999999999999999987221 1236678888888888888888888888887754
Q ss_pred CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHH
Q 036589 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN 162 (176)
Q Consensus 83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~ 162 (176)
.+.|-..|-.|-++|.-.+...-|+-.|++..... +-|+..|.+|-.+|.+.++.++|++.|.+....|-. +...+.
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt--e~~~l~ 470 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT--EGSALV 470 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc--chHHHH
Confidence 34566677777777777777777777777666443 346677777777777777777777777776665543 555666
Q ss_pred HHHHHhhcccc
Q 036589 163 LKIIMNDSQVR 173 (176)
Q Consensus 163 ~li~~~~~~g~ 173 (176)
.|.+.|-+.++
T Consensus 471 ~LakLye~l~d 481 (559)
T KOG1155|consen 471 RLAKLYEELKD 481 (559)
T ss_pred HHHHHHHHHHh
Confidence 66666555443
No 49
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.41 E-value=5.2e-06 Score=57.88 Aligned_cols=84 Identities=11% Similarity=0.135 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHh-----cCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccC-----------------HHHHHHH
Q 036589 52 LHYDLIITKLGR-----AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL-----------------LEHALQV 109 (176)
Q Consensus 52 ~~y~~li~~~~~-----~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~ 109 (176)
.+|..+++.+.+ .|+.+-...-++.|.+- |+.-|..+|+.||+.+-+ |. -+-|+++
T Consensus 48 ~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~ef-gv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 48 ATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEF-GVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred HHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHc-CCcccHHHHHHHHHhCCC-CCcccccHHHHHhccCcHHHHHHHHH
Confidence 344444444442 24444444444455544 555555555555555543 21 1334455
Q ss_pred HHhcccCCCCccHhHHHHHHHHHHhcCc
Q 036589 110 FDEMPSFNVQRTVKSLNTLLNALLTCGK 137 (176)
Q Consensus 110 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 137 (176)
+++|...|+.||..++..|++.|++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 5555555555555555555555544443
No 50
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=8.2e-06 Score=62.57 Aligned_cols=122 Identities=12% Similarity=0.084 Sum_probs=92.0
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF 90 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 90 (176)
.|+..+...++++.|..+|+++ ... .|+ ....+...+...++-.+|.+++++..+. .+-+....
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L-~~~-----------~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL 237 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKL-RER-----------DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELL 237 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHH-Hhc-----------CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHH
Confidence 3455666678899999999998 332 134 3445777777788888888888888865 23456666
Q ss_pred HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~ 149 (176)
..-.+.+.+.++++.|+.+.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 667777888899999999999888653 2345688899999999999999998888775
No 51
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.38 E-value=9.4e-06 Score=64.54 Aligned_cols=148 Identities=11% Similarity=0.071 Sum_probs=83.3
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE- 86 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~- 86 (176)
.|+.|..++-..|++.+|.+.++.. ..- .+--..+.+.|...+.+.|.++.|.++|....+- .|.
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnka-L~l----------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v---~p~~ 387 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKA-LRL----------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV---FPEF 387 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHH-HHh----------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh---Chhh
Confidence 5666666666666666666666664 111 1113445566666666666666666666665543 222
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH-hHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589 87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV-KSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li 165 (176)
....|.|...|-..|++++|+..|++..+ ++|+. ..|+.+-..|-..|+++.|.+.+.+..+.+.. =...++.|.
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt--~AeAhsNLa 463 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT--FAEAHSNLA 463 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH--HHHHHhhHH
Confidence 34456666666667777777777766653 23442 44555555566666666666666555544332 344445555
Q ss_pred HHhhcccc
Q 036589 166 IMNDSQVR 173 (176)
Q Consensus 166 ~~~~~~g~ 173 (176)
..|-.+|.
T Consensus 464 si~kDsGn 471 (966)
T KOG4626|consen 464 SIYKDSGN 471 (966)
T ss_pred HHhhccCC
Confidence 55544444
No 52
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.37 E-value=1.7e-05 Score=56.50 Aligned_cols=123 Identities=12% Similarity=-0.011 Sum_probs=76.7
Q ss_pred HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC 91 (176)
Q Consensus 12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~ 91 (176)
......+.|++..|+..|.+. .. .-++|...|+.+.-+|-+.|++++|..-|.+..+-. .-+....|
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA-~~----------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~n 172 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKA-AR----------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--PNEPSIAN 172 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHH-hc----------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--cCCchhhh
Confidence 455666677777777777766 22 234566777777777777777777777666666541 22334456
Q ss_pred HHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148 (176)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m 148 (176)
.+.-.|.-.|+++.|..++......+ .-|+..-..+.-.....|++++|.++...-
T Consensus 173 Nlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 173 NLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 66666666777777777776665443 225555666666666777777776665443
No 53
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.37 E-value=2.3e-05 Score=54.82 Aligned_cols=116 Identities=11% Similarity=0.046 Sum_probs=91.7
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHH-HHhccC--HHHHHHHHHhcccCCCCccHhH
Q 036589 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF-YGRARL--LEHALQVFDEMPSFNVQRTVKS 124 (176)
Q Consensus 48 ~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~-~~~~g~--~~~a~~~~~~m~~~~~~p~~~~ 124 (176)
+.+...|..+...|...|++++|...|++..+.. .-+...+..+..+ +...|+ .++|.+++++..+.. +-+...
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~a 146 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTA 146 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhH
Confidence 4588899999999999999999999999999762 2356666777776 467777 599999999999765 337788
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589 125 LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169 (176)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~ 169 (176)
+..+-..+...|++++|...++++.+...+ +..-+.. |.+-.
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~--~~~r~~~-i~~i~ 188 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKVLDLNSP--RVNRTQL-VESIN 188 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CccHHHH-HHHHH
Confidence 888999999999999999999999887654 4444433 35533
No 54
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.37 E-value=2e-05 Score=58.32 Aligned_cols=144 Identities=12% Similarity=0.044 Sum_probs=102.4
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHH---HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLH---YDLIITKLGRAKMFDEMQQILHQLKHDTRVIP 85 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~ 85 (176)
....+..|.+.++++.|.+.++.| +... .|... ..+.+........+.+|..+|+++... +.+
T Consensus 134 ~al~Vqi~L~~~R~dlA~k~l~~~-~~~~-----------eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~ 199 (290)
T PF04733_consen 134 LALAVQILLKMNRPDLAEKELKNM-QQID-----------EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGS 199 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-HCCS-----------CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HhcC-----------CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCC
Confidence 345688999999999999999999 4432 23332 222233333345699999999998876 567
Q ss_pred chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcH-HHHHHHHHHHHhccccccchHHHHHH
Q 036589 86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL-DRMKELFISFNLKAIAVLDGLCSNLK 164 (176)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~l~~~m~~~~~~~p~~~t~~~l 164 (176)
+..+.|.+..+....|++++|.+++++..+.. +-+..+...++.+....|+. +.+.+++..++.....+|-...+...
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~ 278 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK 278 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 88899999999999999999999999987544 34667777788888888887 77888999988766554555555544
Q ss_pred HHH
Q 036589 165 IIM 167 (176)
Q Consensus 165 i~~ 167 (176)
=..
T Consensus 279 ~~~ 281 (290)
T PF04733_consen 279 EAE 281 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 55
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.34 E-value=2.4e-06 Score=65.83 Aligned_cols=122 Identities=8% Similarity=-0.011 Sum_probs=97.7
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI 84 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~ 84 (176)
+++....+++.+....+++.+..++.+..... .....-..+..++|+.|.+.|..+.+..+++.=... |+=
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~--------~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~y-GiF 135 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSP--------NCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQY-GIF 135 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCc--------ccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhc-ccC
Confidence 34556677888888888999999988883332 122222334458999999999999999999998888 999
Q ss_pred CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc
Q 036589 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC 135 (176)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 135 (176)
||..++|.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 136 ~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 136 PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred CChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999988666666777777777766665
No 56
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.33 E-value=5.3e-05 Score=53.30 Aligned_cols=148 Identities=12% Similarity=-0.069 Sum_probs=112.5
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF 90 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 90 (176)
-|--.|.+.|+...|..-+++..+. -+-+..+|..+...|.+.|+.+.|.+-|++..+. -+-+..+.
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~-----------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVL 106 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEH-----------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVL 106 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-----------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchh
Confidence 3456788999999999999998322 1336778999999999999999999999998865 23344566
Q ss_pred HHHHHHHHhccCHHHHHHHHHhcccCCC-CccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPSFNV-QRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~ 169 (176)
|.--..+|..|++++|.+.|+.....-. .--..+|..+--+..+.|+.+.|.+.|++-.+.... ...+.-.+.....
T Consensus 107 NNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~--~~~~~l~~a~~~~ 184 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ--FPPALLELARLHY 184 (250)
T ss_pred hhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC--CChHHHHHHHHHH
Confidence 8888889999999999999998775321 123567888888899999999999999998876554 3344455555555
Q ss_pred cccc
Q 036589 170 SQVR 173 (176)
Q Consensus 170 ~~g~ 173 (176)
..|+
T Consensus 185 ~~~~ 188 (250)
T COG3063 185 KAGD 188 (250)
T ss_pred hccc
Confidence 5444
No 57
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.32 E-value=9.3e-05 Score=62.00 Aligned_cols=145 Identities=8% Similarity=-0.039 Sum_probs=92.3
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF 90 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 90 (176)
.++..+...|+.++|+..+++.. .. -.......-.+...+...|++++|.++|+++.+... -+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~-~p----------~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP--~n~~~l 139 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ-SS----------MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP--TNPDLI 139 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc-cC----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHH
Confidence 66777777788888888887772 21 111233333335577777888888888888887621 223444
Q ss_pred HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS 170 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 170 (176)
..++..|.+.++.++|++.++++... .|+...+-.++..+...++..+|++.++++.+..+. +...+..++.+..+
T Consensus 140 ~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~--n~e~~~~~~~~l~~ 215 (822)
T PRK14574 140 SGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT--SEEVLKNHLEILQR 215 (822)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Confidence 56677778888888888888887754 355555544444444455565688888888776543 55566666665555
Q ss_pred cc
Q 036589 171 QV 172 (176)
Q Consensus 171 ~g 172 (176)
.|
T Consensus 216 ~~ 217 (822)
T PRK14574 216 NR 217 (822)
T ss_pred cC
Confidence 44
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.32 E-value=7.8e-05 Score=55.42 Aligned_cols=126 Identities=13% Similarity=-0.084 Sum_probs=94.8
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-ch
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EE 87 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-~~ 87 (176)
|..+-..|.+.|+.++|...|++. ... .+.+...|+.+...+...|++++|...|+...+. .| +.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~A-l~l----------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---~P~~~ 132 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQA-LAL----------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTYN 132 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HHc----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCH
Confidence 556666788899999999999987 221 1336788999999999999999999999999865 33 35
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
..|..+..++...|++++|++.|+...+.. |+..........+...++.++|.+.|.+...
T Consensus 133 ~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 133 YAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 677778888899999999999999887643 4433223333334557789999999976543
No 59
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.32 E-value=8.9e-05 Score=48.23 Aligned_cols=100 Identities=10% Similarity=0.064 Sum_probs=84.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 129 (176)
+......+...+...|++++|.+.++..... + ..+...+..+...|.+.|++++|...|+...+.. +.+...+..+-
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY-D-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 4455667788888999999999999999876 2 3467788889999999999999999999887654 45677788888
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcc
Q 036589 130 NALLTCGKLDRMKELFISFNLKA 152 (176)
Q Consensus 130 ~~~~~~g~~~~a~~l~~~m~~~~ 152 (176)
..+...|++++|.+.|+...+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc
Confidence 89999999999999999988754
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.31 E-value=3.2e-05 Score=54.38 Aligned_cols=154 Identities=11% Similarity=-0.042 Sum_probs=121.0
Q ss_pred CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589 6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP 85 (176)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~ 85 (176)
+.+|..+...|-+.|+.+.|.+.|+...+.. +-+-.+.|.-...+|..|++++|+..|++........-
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-----------p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~ 137 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLA-----------PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGE 137 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-----------CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCC
Confidence 4489999999999999999999999972221 22667888888999999999999999999998834444
Q ss_pred chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589 86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165 (176)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li 165 (176)
-..+|..+.-|..+.|+.+.|...|+.-.+.. +-...+.-.+.....+.|++..|...++.....+. ++..+.-..|
T Consensus 138 ~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~--~~A~sL~L~i 214 (250)
T COG3063 138 PSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG--AQAESLLLGI 214 (250)
T ss_pred cchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc--ccHHHHHHHH
Confidence 56788899999999999999999999888654 22455677788888999999999999998876655 4555555555
Q ss_pred HHhhcccc
Q 036589 166 IMNDSQVR 173 (176)
Q Consensus 166 ~~~~~~g~ 173 (176)
..--+.|+
T Consensus 215 riak~~gd 222 (250)
T COG3063 215 RIAKRLGD 222 (250)
T ss_pred HHHHHhcc
Confidence 44444443
No 61
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.31 E-value=6.3e-05 Score=62.93 Aligned_cols=154 Identities=10% Similarity=-0.112 Sum_probs=112.3
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCC--CCCCCCCc---HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAP--PLKPFRYN---LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV 83 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~ 83 (176)
...+..++...|++++|.++++.+ ......... ....-.|+ ...+..+...+...|++++|++.++++... .
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~-~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~ 389 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHT-INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--A 389 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHH-hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 455666788899999999999888 332100000 00011233 335667788889999999999999999876 3
Q ss_pred CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHH
Q 036589 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163 (176)
Q Consensus 84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~ 163 (176)
+-+...+..+...+...|++++|++.+++..+.. +-+...+-.....+.+.|++++|..+++++.+.....|.+.-+.-
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR 468 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4456788899999999999999999999988654 234666677777899999999999999999886555355555554
Q ss_pred HHH
Q 036589 164 KII 166 (176)
Q Consensus 164 li~ 166 (176)
..+
T Consensus 469 ~~~ 471 (765)
T PRK10049 469 ARD 471 (765)
T ss_pred HHH
Confidence 443
No 62
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=3.7e-05 Score=51.02 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=91.2
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch-
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE- 87 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~- 87 (176)
|..++..+ ..++...+...++.+.... ++-.......-.+...+...|++++|...|+++... ...+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~ 84 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELK 84 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHH
Confidence 44555555 4888888888888883332 222222334444557788899999999999999987 433332
Q ss_pred -HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHH
Q 036589 88 -IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS 147 (176)
Q Consensus 88 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~ 147 (176)
...-.|...+...|++++|+..++...... .....+...-+.|.+.|+.++|...|+.
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344457888899999999999998865443 3445566777999999999999999875
No 63
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.30 E-value=4.5e-06 Score=66.29 Aligned_cols=145 Identities=12% Similarity=-0.007 Sum_probs=103.1
Q ss_pred HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHH
Q 036589 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV 93 (176)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l 93 (176)
-.|-.+|.++.|+..+++. .+.. ++ =+..|+.|..++...|++.+|.+.|++...- ..-..-..+.|
T Consensus 294 ~iYyeqG~ldlAI~~Ykra-l~~~-------P~---F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NL 360 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRA-LELQ-------PN---FPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNL 360 (966)
T ss_pred EEEeccccHHHHHHHHHHH-HhcC-------CC---chHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHH
Confidence 3345567777777777776 2221 22 3567899999999999999999999988865 22234466779
Q ss_pred HHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccc-hHHHHHHHHHhhccc
Q 036589 94 ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD-GLCSNLKIIMNDSQV 172 (176)
Q Consensus 94 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~-~~t~~~li~~~~~~g 172 (176)
-..|.+.|.+++|..+|....+.. +--...+|.|...|-..|++++|+..+++...- . |+ ...|+.|=+.|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~-P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--K-PTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--C-chHHHHHHhcchHHHHhh
Confidence 999999999999999998877532 123456888999999999999999999987653 3 43 455666666665555
Q ss_pred cCC
Q 036589 173 RVT 175 (176)
Q Consensus 173 ~~~ 175 (176)
+++
T Consensus 437 ~v~ 439 (966)
T KOG4626|consen 437 DVS 439 (966)
T ss_pred hHH
Confidence 543
No 64
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.30 E-value=7.7e-05 Score=62.50 Aligned_cols=151 Identities=8% Similarity=-0.001 Sum_probs=109.2
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----CCCc
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR----VIPE 86 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g----~~~~ 86 (176)
-.+-++...+++.+|++.|+.+ +. .+.+.-.++-..+.++|...+++++|+.+|+.+....+ ..++
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l-~~---------~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~ 366 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAM-EA---------EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD 366 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHh-hh---------cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc
Confidence 3467788889999999999999 44 23333356777788999999999999999999876532 1234
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-----------Ccc--H-hHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589 87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNV-----------QRT--V-KSLNTLLNALLTCGKLDRMKELFISFNLKA 152 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~--~-~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 152 (176)
......|..+|...+++++|.++++.+.+..- .|| - ..+..++..+...|++.+|+++++++....
T Consensus 367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a 446 (822)
T PRK14574 367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA 446 (822)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44457788999999999999999998875210 111 1 223445677888999999999999987766
Q ss_pred ccccchHHHHHHHHHhhcccc
Q 036589 153 IAVLDGLCSNLKIIMNDSQVR 173 (176)
Q Consensus 153 ~~~p~~~t~~~li~~~~~~g~ 173 (176)
+. |......+-+.+...|+
T Consensus 447 P~--n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 447 PA--NQNLRIALASIYLARDL 465 (822)
T ss_pred CC--CHHHHHHHHHHHHhcCC
Confidence 65 77777777777666654
No 65
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.29 E-value=3.4e-05 Score=45.83 Aligned_cols=96 Identities=14% Similarity=0.066 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH
Q 036589 53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132 (176)
Q Consensus 53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 132 (176)
.|..+...+...|++++|...+++..+.. ..+...+..+...+...|++++|.+.|+...+.. ..+..++..+...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 35567778888999999999999998762 2234677788899999999999999999887654 33446788888999
Q ss_pred HhcCcHHHHHHHHHHHHhc
Q 036589 133 LTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 133 ~~~g~~~~a~~l~~~m~~~ 151 (176)
...|++++|...+....+.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 9999999999999887653
No 66
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.29 E-value=1.5e-05 Score=55.71 Aligned_cols=88 Identities=10% Similarity=0.209 Sum_probs=74.4
Q ss_pred CchHHHHHHHHHHHh-----ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc----------------HHHHHH
Q 036589 85 PEEIIFCNVISFYGR-----ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK----------------LDRMKE 143 (176)
Q Consensus 85 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----------------~~~a~~ 143 (176)
.|..+|..+++.|.+ .|..+=....++.|.+.|+.-|..+|+.||+.+-+... -+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 466677777777754 46788888889999999999999999999999987442 366889
Q ss_pred HHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589 144 LFISFNLKAIAVLDGLCSNLKIIMNDSQVR 173 (176)
Q Consensus 144 l~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 173 (176)
|++.|...|+. ||..|+..+++.+.+.+.
T Consensus 125 lL~qME~~gV~-Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVM-PDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCC-CcHHHHHHHHHHhccccH
Confidence 99999999999 999999999999987653
No 67
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.29 E-value=1.4e-05 Score=61.79 Aligned_cols=161 Identities=12% Similarity=-0.044 Sum_probs=114.0
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCC--------------------------------CCCCCCCcHH
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAP--------------------------------PLKPFRYNLL 52 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~ 52 (176)
++.....+...|.+.|++++|.+++..+.+... .... .....+.++.
T Consensus 186 ~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~ 264 (398)
T PRK10747 186 HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVA 264 (398)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHH
Confidence 344667788999999999999988888833221 1000 0012223555
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH
Q 036589 53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132 (176)
Q Consensus 53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 132 (176)
....+...+...|+.++|.+++++..+. . ++.. -.++.+....++.+++.+..+...+.. +-|...+..+-..+
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~--~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~ 338 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKR-Q--YDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLL 338 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-C--CCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 6666777888889999999988888765 3 3331 113444445688899999888887543 34556677888999
Q ss_pred HhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 133 LTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 133 ~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
.+.+++++|.+.|+...+. . |+..+|-.+...+.+.|+.+
T Consensus 339 ~~~~~~~~A~~~le~al~~--~-P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 339 MKHGEWQEASLAFRAALKQ--R-PDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--C-CCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998764 3 88888889999998888754
No 68
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.26 E-value=9e-05 Score=46.82 Aligned_cols=103 Identities=11% Similarity=-0.032 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC--CCccHhHHHHH
Q 036589 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRV-IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN--VQRTVKSLNTL 128 (176)
Q Consensus 52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l 128 (176)
.++......+.+.|++++|...|+.+.+...- ......+..+..++.+.|++++|...|+.+.... .......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45666788889999999999999999876211 1123456668999999999999999999988542 11224567888
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 129 LNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 129 l~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
...+.+.|+.++|.+.+++..+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 88999999999999999999887554
No 69
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=0.00016 Score=51.72 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=114.8
Q ss_pred HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC 91 (176)
Q Consensus 12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~ 91 (176)
+-..+.-.|+-+.+..+.... . ...+-|.......+....+.|++..|...+++.... -.+|...|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~-~----------~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~ 138 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKS-A----------IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWN 138 (257)
T ss_pred HHHHHHhcccccchHHHHhhh-h----------ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhh
Confidence 344455556666666655554 1 223446667777888999999999999999999875 478999999
Q ss_pred HHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcc
Q 036589 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQ 171 (176)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~ 171 (176)
.+--+|-+.|++++|..-|.+..+.- .-+....|.|.-.|.-.|+.+.|..++......+.. |...-..+.-.-...
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a--d~~v~~NLAl~~~~~ 215 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA--DSRVRQNLALVVGLQ 215 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC--chHHHHHHHHHHhhc
Confidence 99999999999999999999887543 346677899999999999999999999998877664 666666666666666
Q ss_pred ccCC
Q 036589 172 VRVT 175 (176)
Q Consensus 172 g~~~ 175 (176)
|+++
T Consensus 216 g~~~ 219 (257)
T COG5010 216 GDFR 219 (257)
T ss_pred CChH
Confidence 6654
No 70
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=0.00011 Score=60.43 Aligned_cols=144 Identities=9% Similarity=0.006 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589 6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP 85 (176)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~ 85 (176)
+..+..|.+...+.|.+++|..+++.. .+. .+-+......+...+.+.+++++|....++.... .|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~-~~~----------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p 151 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGI-HQR----------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GS 151 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH-Hhh----------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CC
Confidence 445667788888999999999999998 332 1235667888999999999999999999999966 34
Q ss_pred c-hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589 86 E-EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK 164 (176)
Q Consensus 86 ~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l 164 (176)
+ ....+.+-.++.+.|++++|+.+|++....+ .-+...+..+-..+-..|+.++|...|+...+.-- |...-|+.+
T Consensus 152 ~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~--~~~~~~~~~ 228 (694)
T PRK15179 152 SSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG--DGARKLTRR 228 (694)
T ss_pred CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--cchHHHHHH
Confidence 4 4455778889999999999999999999732 33478889999999999999999999999876433 345565554
Q ss_pred HH
Q 036589 165 II 166 (176)
Q Consensus 165 i~ 166 (176)
+.
T Consensus 229 ~~ 230 (694)
T PRK15179 229 LV 230 (694)
T ss_pred HH
Confidence 43
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.25 E-value=4.3e-05 Score=56.31 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=85.4
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF 90 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 90 (176)
.|=+.|.+.|..++|+++-.-+.... .-.+.......-.|..=|...|-++.|+.+|..+... + ..-....
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~sp-------dlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de-~-efa~~Al 144 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESP-------DLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE-G-EFAEGAL 144 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-------CCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc-h-hhhHHHH
Confidence 44556666677777776665552221 0111122223334555566667777777777776654 1 1222334
Q ss_pred HHHHHHHHhccCHHHHHHHHHhcccCCCC-------------------------------------ccHhHHHHHH-HHH
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPSFNVQ-------------------------------------RTVKSLNTLL-NAL 132 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------------------------------------p~~~~~~~ll-~~~ 132 (176)
..|+..|....+|++|+++-+++...+-. |+.+--++++ +.+
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~ 224 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE 224 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence 45666666666666666655554433322 2222223333 444
Q ss_pred HhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 133 LTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 133 ~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
...|++.+|.+.++...+.+.. --..+-..|..+|...|+.+
T Consensus 225 ~~~g~y~~AV~~~e~v~eQn~~-yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQNPE-YLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HhccchHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHhCCHH
Confidence 5566777777777777666655 55667777777777777653
No 72
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00013 Score=52.40 Aligned_cols=130 Identities=18% Similarity=0.153 Sum_probs=103.2
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN 92 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~ 92 (176)
...|++.+++++|++..+.. . +...+..=...+.+..+++-|++.+++|.+. -+..|.+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~-~---------------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQ 174 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG-E---------------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQ 174 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc-c---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHH
Confidence 34678899999999998875 1 4555555567778899999999999999977 36777777
Q ss_pred HHHHHHh----ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589 93 VISFYGR----ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165 (176)
Q Consensus 93 li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li 165 (176)
|..+|.+ .+.+.+|.-+|++|-+ ...|+..+.|-...++...|++++|..++++...+... +..|...+|
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~--dpetL~Nli 248 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK--DPETLANLI 248 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC--CHHHHHHHH
Confidence 7777765 4569999999999984 34699999999999999999999999999999877665 444444443
No 73
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.22 E-value=2.2e-05 Score=52.07 Aligned_cols=103 Identities=6% Similarity=-0.171 Sum_probs=84.6
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI 88 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~ 88 (176)
+..+-..+...|++++|...|+.. .. --+.+...|..+..++.+.|++++|...|+...+. -..+..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~a-l~----------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~ 93 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWL-VM----------AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPE 93 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HH----------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcH
Confidence 555677888999999999999997 22 12447889999999999999999999999999976 245777
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 126 (176)
.+..+-.++.+.|++++|+..|+...+.. |+-.-+.
T Consensus 94 a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~~ 129 (144)
T PRK15359 94 PVYQTGVCLKMMGEPGLAREAFQTAIKMS--YADASWS 129 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHH
Confidence 88889999999999999999999988653 5544333
No 74
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.20 E-value=0.00018 Score=49.14 Aligned_cols=118 Identities=13% Similarity=0.044 Sum_probs=87.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc--hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHH
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE--EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 127 (176)
....|..+...+...|++++|...|++..+. ...+. ...+..+...+.+.|++++|+..+++..+.. +-+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 5567888888999999999999999999865 33222 4678889999999999999999999988643 224566677
Q ss_pred HHHHHHhcCc--------------HHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589 128 LLNALLTCGK--------------LDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 128 ll~~~~~~g~--------------~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 174 (176)
+...+...|+ +++|.+++++.... +...|..++..+...|+.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~-----~p~~~~~~~~~~~~~~~~ 167 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL-----APNNYIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh-----CchhHHHHHHHHHhcCcc
Confidence 7777777766 45666666666553 333477777777776664
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=8.4e-05 Score=54.85 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=99.0
Q ss_pred ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH--HHHHHHHH
Q 036589 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI--IFCNVISF 96 (176)
Q Consensus 19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~--~~~~li~~ 96 (176)
+.++++|.++|-+|.... +.+..+.-+|.+-|-..|..+.|.++++.+.++.+...+.. ....|-+-
T Consensus 48 s~Q~dKAvdlF~e~l~~d-----------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-----------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred hcCcchHHHHHHHHHhcC-----------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 678999999999993331 22555666788999999999999999999998854444443 33457788
Q ss_pred HHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 97 YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 97 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
|-.+|-++.|+.+|..+.+.+ ..-....--|+..|-...+|++|+++-+++.+.+-.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 899999999999999999755 234556778999999999999999999999886554
No 76
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.18 E-value=1.2e-05 Score=48.08 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=61.3
Q ss_pred cCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHH
Q 036589 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143 (176)
Q Consensus 64 ~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 143 (176)
.|+++.|..+++++.+.....++...+-.+..+|.+.|++++|+.+++. .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5789999999999998832223555566689999999999999999998 32221 233444455788999999999999
Q ss_pred HHHH
Q 036589 144 LFIS 147 (176)
Q Consensus 144 l~~~ 147 (176)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
No 77
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.17 E-value=5.8e-05 Score=58.42 Aligned_cols=128 Identities=10% Similarity=0.027 Sum_probs=102.7
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI 84 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~ 84 (176)
++.....+...+.+.|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+. .+
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------------~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P 325 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR------------QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HG 325 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CC
Confidence 3445567788999999999999999887222 3344322 344445669999999999998876 33
Q ss_pred CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
-|...+..+-..+.+.+++++|.+.|+...+. .|+...+-.+...+.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556788999999999999999999999865 49999999999999999999999999998654
No 78
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.17 E-value=7.2e-05 Score=57.49 Aligned_cols=117 Identities=15% Similarity=0.049 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 130 (176)
-+.-..++..+...++++.|..+++++.+. . |+.. ..+++.+...++-.+|++++++..... +-+......-..
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~-~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRER-D--PEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhc-C--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344556677777789999999999999988 3 5543 447888888899999999999888432 336666666778
Q ss_pred HHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 131 ALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 131 ~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
.|.+.++++.|+++.+++.+..+. +..+|..|..+|...|+++
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~--~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPS--EFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhcCCHH
Confidence 889999999999999999987665 7789999999999999976
No 79
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.16 E-value=6.8e-05 Score=55.30 Aligned_cols=132 Identities=11% Similarity=0.107 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589 7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE 86 (176)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~ 86 (176)
++|-.+|+...|.+..+.|.++|++. ... ......++...++|..+ ..++.+.|.++|+...+. +..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a-~~~--------~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~--f~~~ 69 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRA-RKD--------KRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK--FPSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HCC--------CCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH--HTT-
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH-HcC--------CCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCC
Confidence 35888999999999999999999999 443 34556676666666533 346678899999999987 5667
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc---HhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589 87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT---VKSLNTLLNALLTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~ 151 (176)
...|..-++.+.+.++.+.|..+|+..... +.++ ...|...+..=.+.|+++.+.++.+++.+.
T Consensus 70 ~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 70 PDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888899999999999999999998854 2332 358999999999999999999999998874
No 80
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00015 Score=55.84 Aligned_cols=134 Identities=8% Similarity=0.013 Sum_probs=114.1
Q ss_pred CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036589 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR 82 (176)
Q Consensus 3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g 82 (176)
+.....|+.+=+-|....+-+.|++-++... + -.+.|-..|--+.++|.-.+...=|.-.|++..+-
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv-d----------i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-- 427 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV-D----------INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-- 427 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHH-h----------cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--
Confidence 3344578888889999999999999999972 2 33558889999999999999999999999998865
Q ss_pred CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
-+-|...|.+|-++|.+.+++++|+..|......| ..+...+..|.+.|-+.++..+|...|..-++
T Consensus 428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23477899999999999999999999999988665 44678899999999999999999999988765
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=1.9e-05 Score=58.38 Aligned_cols=134 Identities=11% Similarity=0.037 Sum_probs=101.7
Q ss_pred CCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589 2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81 (176)
Q Consensus 2 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~ 81 (176)
..|-+.||-.|-+.|-+..++..|+.+|.+- . +.++-++....-+.+.+-..++.++|.++|+...+.
T Consensus 252 q~~~~dTfllLskvY~ridQP~~AL~~~~~g-l----------d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~- 319 (478)
T KOG1129|consen 252 QFPHPDTFLLLSKVYQRIDQPERALLVIGEG-L----------DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL- 319 (478)
T ss_pred cCCchhHHHHHHHHHHHhccHHHHHHHHhhh-h----------hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-
Confidence 3577889999999999999999999999987 2 344556665566667777888999999999988876
Q ss_pred CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149 (176)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~ 149 (176)
..-++....++...|.=.++++-|+..|+.+.+.|+. +...|+.+--+|...+.+|-++.-|.+..
T Consensus 320 -~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 320 -HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred -CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 3445556666667777778888888888888888854 66677777777777777777776666654
No 82
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=98.15 E-value=6.8e-05 Score=48.48 Aligned_cols=97 Identities=9% Similarity=0.033 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHhccChhHHHHhhcCC---CCCCCCCC--CCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589 6 PTSPFRLASLLHLQKHPKLALQLFKNP---NPNANDTE--APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 80 (176)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 80 (176)
..++..+|.++++.|+++....+++.. ........ .++..+..|+.....+++.+|+..|++..|+++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 456789999999999999998888764 11111111 2456677899999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHhccC
Q 036589 81 TRVIPEEIIFCNVISFYGRARL 102 (176)
Q Consensus 81 ~g~~~~~~~~~~li~~~~~~g~ 102 (176)
++++.+..+|..|++-.....+
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999988766554
No 83
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.15 E-value=3.3e-05 Score=50.27 Aligned_cols=105 Identities=15% Similarity=-0.002 Sum_probs=83.2
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
....+...+...|++++|.+.|+.. ... .+.+...|..+..++.+.|++++|...++...+. . ..+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~-~~~----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-p~~~ 85 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLL-AAY----------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-D-PDDP 85 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHH-HHh----------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCh
Confidence 3455667888899999999999997 221 2347788899999999999999999999998876 2 4456
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHH
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 127 (176)
..+..+-..|...|++++|+..|+...+.. |+...+..
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 123 (135)
T TIGR02552 86 RPYFHAAECLLALGEPESALKALDLAIEIC--GENPEYSE 123 (135)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchHHH
Confidence 677778889999999999999999888653 55544443
No 84
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.14 E-value=6.8e-05 Score=58.26 Aligned_cols=133 Identities=9% Similarity=-0.020 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHH---HHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLH---YDLIITKLGRAKMFDEMQQILHQLKHDT 81 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---y~~li~~~~~~g~~~~a~~~~~~m~~~~ 81 (176)
++..+..+...+...|++++|.+++++..+.. |+... ...........++.+.+.+.++...+..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~------------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL------------GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC------------CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 45566677788888888888888888873321 12211 1111122233567777777777766653
Q ss_pred CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149 (176)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~ 149 (176)
.-.|+.....++-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333245567788888888888888888853333335888888888888888888888888888753
No 85
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.14 E-value=0.00013 Score=54.95 Aligned_cols=165 Identities=7% Similarity=-0.077 Sum_probs=104.6
Q ss_pred CCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589 2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81 (176)
Q Consensus 2 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~ 81 (176)
..-++...+...++|.+.|++.....++..+.+.+.-+... -..-...+|..+++-....+..+.-...|++..+.
T Consensus 183 ~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e---~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~- 258 (400)
T COG3071 183 TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE---AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK- 258 (400)
T ss_pred CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH---HHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-
Confidence 34455567778999999999999999999994443110000 00011224555665555555555555566655554
Q ss_pred CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC------------------------------ccHhHHHHHHHH
Q 036589 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ------------------------------RTVKSLNTLLNA 131 (176)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------------------------------p~~~~~~~ll~~ 131 (176)
.+-+...-.+++.-+.++|+.++|.++.++-.+.+.. -++..+.+|-..
T Consensus 259 -lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L 337 (400)
T COG3071 259 -LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL 337 (400)
T ss_pred -hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 3334444455566666666666666655544432211 233567778888
Q ss_pred HHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589 132 LLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 132 ~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 174 (176)
|.+++.+.+|.+.|+... ... |+..+|+.+-++|.+.|+.
T Consensus 338 ~~k~~~w~kA~~~leaAl--~~~-~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 338 ALKNKLWGKASEALEAAL--KLR-PSASDYAELADALDQLGEP 377 (400)
T ss_pred HHHhhHHHHHHHHHHHHH--hcC-CChhhHHHHHHHHHHcCCh
Confidence 889999999999998544 345 8899999999999888864
No 86
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=0.00024 Score=54.96 Aligned_cols=146 Identities=11% Similarity=0.113 Sum_probs=113.5
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF 90 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 90 (176)
.+...|-...++..|++++-+. .. -++-|+...+.|...|-+.|+-.+|.+.+-+--+. +.-+..+.
T Consensus 563 qianiye~led~aqaie~~~q~-~s----------lip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~i 629 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQA-NS----------LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETI 629 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHh-cc----------cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHH
Confidence 3455666677888888888776 22 34558889999999999999999998887665544 56677788
Q ss_pred HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH-HhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL-LTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~ 169 (176)
..|...|....=++++++.|+... -++|+..-|-.||.+| .+.|++.+|.+++++.-.. ++ -|..+...|+..+.
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fp-edldclkflvri~~ 705 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FP-EDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-Cc-cchHHHHHHHHHhc
Confidence 878888888888999999999754 2369999999999665 5589999999999996543 44 58888888888777
Q ss_pred cccc
Q 036589 170 SQVR 173 (176)
Q Consensus 170 ~~g~ 173 (176)
..|-
T Consensus 706 dlgl 709 (840)
T KOG2003|consen 706 DLGL 709 (840)
T ss_pred cccc
Confidence 6653
No 87
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.12 E-value=1.9e-06 Score=70.40 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=56.6
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhH
Q 036589 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124 (176)
Q Consensus 45 ~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 124 (176)
.|+.|+.++|..+|.-||..|+++.|- +|.-|+-. ....+...|+.++.+-..+++.+.+. .|...+
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 456667777777777777777777776 66666666 66666777777777666666665554 466777
Q ss_pred HHHHHHHHHhcCcHHH
Q 036589 125 LNTLLNALLTCGKLDR 140 (176)
Q Consensus 125 ~~~ll~~~~~~g~~~~ 140 (176)
|+.|+.+|..+||+.-
T Consensus 86 yt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHHHHhccchHH
Confidence 7777777777777544
No 88
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.08 E-value=8.6e-05 Score=46.93 Aligned_cols=102 Identities=8% Similarity=-0.100 Sum_probs=79.3
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCCc
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-VIPE 86 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g-~~~~ 86 (176)
++..+...+.+.|++++|.+.|+.+.... ++.......+..+..++.+.|+++.|...|+.+..... ....
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--------PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence 46677888899999999999999983221 22222355677799999999999999999999987522 1223
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589 87 EIIFCNVISFYGRARLLEHALQVFDEMPSFN 117 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 117 (176)
...+..+..++.+.|++++|...++++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 4567778889999999999999999998654
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.08 E-value=6.7e-05 Score=59.30 Aligned_cols=164 Identities=10% Similarity=-0.019 Sum_probs=114.1
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCC-CCCcHHH-HHHHHHHHHhcCChHHHHHHHHHHhhc----C
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLLH-YDLIITKLGRAKMFDEMQQILHQLKHD----T 81 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-y~~li~~~~~~g~~~~a~~~~~~m~~~----~ 81 (176)
+...+...|...|+++.|.+++++....- ++..| ..|.+.+ .+.+...|...+++++|..+|+++... .
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l-----~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRIL-----EKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH-----HHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 55668899999999999999998862110 00012 1334443 333667788899999999999988754 1
Q ss_pred C--CCCchHHHHHHHHHHHhccCHHHHHHHHHhccc-----CCC-Cc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc-
Q 036589 82 R--VIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-----FNV-QR-TVKSLNTLLNALLTCGKLDRMKELFISFNLK- 151 (176)
Q Consensus 82 g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~- 151 (176)
| ...-..+++.|-.+|.+.|++++|..+++...+ .|. .| -...++.+...++..+++++|..++....+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 333457788899999999999888877765432 111 12 2344777788889999999999999876431
Q ss_pred ----cccc-cchHHHHHHHHHhhccccCCC
Q 036589 152 ----AIAV-LDGLCSNLKIIMNDSQVRVTG 176 (176)
Q Consensus 152 ----~~~~-p~~~t~~~li~~~~~~g~~~~ 176 (176)
|..+ --..+++.|-..|-..|++++
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~e 385 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKE 385 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhH
Confidence 2221 135789999999999998864
No 90
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.06 E-value=0.0003 Score=54.69 Aligned_cols=122 Identities=10% Similarity=0.005 Sum_probs=94.7
Q ss_pred ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHH
Q 036589 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNL-LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97 (176)
Q Consensus 19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~ 97 (176)
.|+++.|.+.+... .+ ..|+. ..|-....+....|+.+.|.+.+++..+. ...+.....-.....+
T Consensus 97 ~g~~~~A~~~l~~~-~~-----------~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 97 EGDYAKAEKLIAKN-AD-----------HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-AGNDNILVEIARTRIL 163 (409)
T ss_pred CCCHHHHHHHHHHH-hh-----------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCcCchHHHHHHHHHH
Confidence 79999999999877 22 23443 33344457777889999999999998866 2222222334457788
Q ss_pred HhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 98 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
...|++++|.+.++.+.+.. +-+......+...+...|++++|.+++..+.+.+..
T Consensus 164 l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 88999999999999999765 336678889999999999999999999999988765
No 91
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.05 E-value=6.9e-05 Score=44.44 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=76.3
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
.+..+...+...|++++|...|++.... .+.+...+..+..++...+++++|.+.++..... . ..+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL-----------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-D-PDNA 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc-----------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-Ccch
Confidence 3566778888999999999999987222 1224477888899999999999999999998876 2 2344
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhccc
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPS 115 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 115 (176)
.++..+...+...|++++|...+....+
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 6788888999999999999999988764
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.05 E-value=0.00027 Score=50.55 Aligned_cols=136 Identities=14% Similarity=-0.009 Sum_probs=96.5
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhc--------CChHHHHHHHHHHhh
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA--------KMFDEMQQILHQLKH 79 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~--------g~~~~a~~~~~~m~~ 79 (176)
.+..+...+.+.|++++|...|+.+.... ++...-...+..+..++.+. |++++|.+.|+.+..
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLH--------PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--------cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999983221 22111223455555556554 788999999999987
Q ss_pred cCCCCCch-HHH--------------HHHHHHHHhccCHHHHHHHHHhcccCC--CCccHhHHHHHHHHHHhcCcHHHHH
Q 036589 80 DTRVIPEE-IIF--------------CNVISFYGRARLLEHALQVFDEMPSFN--VQRTVKSLNTLLNALLTCGKLDRMK 142 (176)
Q Consensus 80 ~~g~~~~~-~~~--------------~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~ 142 (176)
...-.+.. ..+ ..+...|.+.|++++|+..|++..+.. .+.....+..+..++.+.|++++|.
T Consensus 144 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 144 RYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 62111111 011 134567888999999999999987542 1234578899999999999999999
Q ss_pred HHHHHHHhc
Q 036589 143 ELFISFNLK 151 (176)
Q Consensus 143 ~l~~~m~~~ 151 (176)
.+++.+...
T Consensus 224 ~~~~~l~~~ 232 (235)
T TIGR03302 224 DAAAVLGAN 232 (235)
T ss_pred HHHHHHHhh
Confidence 999988764
No 93
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.02 E-value=0.0005 Score=46.67 Aligned_cols=122 Identities=15% Similarity=-0.021 Sum_probs=83.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC--chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHH
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP--EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 127 (176)
....|..+...+...|++++|...|+..... ...+ ...++..+-..|...|++++|+..+++..+.. +....+++.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 4667788888888999999999999999865 2222 23578889999999999999999999987542 234455666
Q ss_pred HHHHHH-------hcCcHHHHHHHHHHHHh---ccccccchHHHHHHHHHhhccccC
Q 036589 128 LLNALL-------TCGKLDRMKELFISFNL---KAIAVLDGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 128 ll~~~~-------~~g~~~~a~~l~~~m~~---~~~~~p~~~t~~~li~~~~~~g~~ 174 (176)
+...+. ..|++++|...+++-.. .... .+...+......+...|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~-~~p~~~~~~~~~~~~~~~~ 167 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIA-LAPGNYIEAQNWLKITGRF 167 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHH-hCcccHHHHHHHHHHhcCC
Confidence 666666 78888766655554321 1111 3333444444445555554
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.01 E-value=0.00058 Score=50.79 Aligned_cols=101 Identities=10% Similarity=-0.037 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 130 (176)
...|......+...|+.++|...|++..+. . ..+...|+.+-..|...|++++|.+.|+...+.. +-+...|..+..
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~ 140 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL-R-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456778888899999999999999999876 2 2356888999999999999999999999998653 224677888888
Q ss_pred HHHhcCcHHHHHHHHHHHHhcccc
Q 036589 131 ALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 131 ~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
.+...|++++|.+.|+...+....
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC
Confidence 899999999999999998876554
No 95
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.01 E-value=0.00097 Score=44.55 Aligned_cols=100 Identities=8% Similarity=0.002 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 129 (176)
+......+-.-+...|++++|.++|+-+..- .+ -+..-|-.|--++...|++++|+..|....... +-|...+-.+-
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-DA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 4555556677778999999999999999976 22 233444568888999999999999999988766 45888889999
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcc
Q 036589 130 NALLTCGKLDRMKELFISFNLKA 152 (176)
Q Consensus 130 ~~~~~~g~~~~a~~l~~~m~~~~ 152 (176)
.++...|+.+.|.+-|+......
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999876543
No 96
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.00 E-value=0.00012 Score=54.07 Aligned_cols=119 Identities=10% Similarity=0.126 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHH
Q 036589 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131 (176)
Q Consensus 52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 131 (176)
.+|-.+++..-+.+..+.|..+|++.++...+..++....+++..+ ..++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 5788999999999999999999999997644555555555555543 346677799999988743 45678889999999
Q ss_pred HHhcCcHHHHHHHHHHHHhccccccc---hHHHHHHHHHhhccccC
Q 036589 132 LLTCGKLDRMKELFISFNLKAIAVLD---GLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 132 ~~~~g~~~~a~~l~~~m~~~~~~~p~---~~t~~~li~~~~~~g~~ 174 (176)
+.+.|+.+.|..+|++.... ++ ++ ...|...++.=.+.|++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~-~~~~~~~iw~~~i~fE~~~Gdl 123 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LP-KEKQSKKIWKKFIEFESKYGDL 123 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SS-CHHHCHHHHHHHHHHHHHHS-H
T ss_pred HHHhCcHHHHHHHHHHHHHh-cC-chhHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999998876 32 22 35888888877777654
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.97 E-value=0.00042 Score=57.16 Aligned_cols=123 Identities=11% Similarity=-0.016 Sum_probs=98.8
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHH
Q 036589 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE-EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125 (176)
Q Consensus 47 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 125 (176)
+..++..+-.|.......|++++|+.+++...+. .|+ ......+...+.+.+++++|...+++..+.. +-+....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHH
Confidence 3456888888999999999999999999999965 454 4556778999999999999999999998664 2345556
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 126 NTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 126 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
+.+-.++.+.|++++|.++|++....+.. +..++..+-.++-+.|+.+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~--~~~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPE--FENGYVGWAQSLTRRGALW 205 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHH
Confidence 67778889999999999999999984433 4677777777777777654
No 98
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.97 E-value=0.00067 Score=52.59 Aligned_cols=107 Identities=14% Similarity=0.028 Sum_probs=66.7
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc-HhHHHHHHHHHHhcCcHHH
Q 036589 62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT-VKSLNTLLNALLTCGKLDR 140 (176)
Q Consensus 62 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~ 140 (176)
-..|.+++|+..++.+.+. .+-|...+....+.+.+.++..+|.+.++.+... .|+ ....-.+-.+|.+.|+..+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 3456677777777776654 2233333344556667777777777777776644 244 4444455567777777777
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589 141 MKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 141 a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 174 (176)
|+.++++....... |...|..|-.+|...|+.
T Consensus 393 ai~~L~~~~~~~p~--dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 393 AIRILNRYLFNDPE--DPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHHHhhcCCC--CchHHHHHHHHHHHhCch
Confidence 77777776655554 666777777777766654
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.96 E-value=0.00013 Score=62.73 Aligned_cols=137 Identities=10% Similarity=0.093 Sum_probs=105.8
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
.|..|...|.+..+.++|.++|+.|. +.+.....+|...+..+.+..+-+.|..++++..+...-+-..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~-----------KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLML-----------KKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHH-----------HHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 46778888888888888988888883 2344577888888888888888888888888887662222233
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccc
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
....-.++.-.+.|+.+.+..+|+.....- +--...|+.+|+.=.++|+.+.+.++|++....++. |-
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~-~k 1668 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS-IK 1668 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-hh
Confidence 444555666678899999999999887543 224678999999999999999999999999988887 54
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.96 E-value=0.00015 Score=50.72 Aligned_cols=109 Identities=12% Similarity=0.022 Sum_probs=85.4
Q ss_pred CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHH-HhcCC--hHHHHHHHHHHhh
Q 036589 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKL-GRAKM--FDEMQQILHQLKH 79 (176)
Q Consensus 3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~-~~~g~--~~~a~~~~~~m~~ 79 (176)
..+...|..+-..|...|++++|...|++. ... .+-+...+..+..++ ...|+ .++|.+++++..+
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~A-l~l----------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQA-LQL----------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh----------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 455667889999999999999999999998 231 123777888888764 66677 5999999999998
Q ss_pred cCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHH
Q 036589 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125 (176)
Q Consensus 80 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 125 (176)
. . .-+...+..+...+.+.|++++|+..|+++.+.. .|+..-+
T Consensus 139 ~-d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 139 L-D-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred h-C-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 7 2 2356777888899999999999999999998654 4444433
No 101
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=0.00026 Score=56.55 Aligned_cols=131 Identities=15% Similarity=-0.040 Sum_probs=100.3
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI 88 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~ 88 (176)
|.-|--.|.+.++++.|.-.|+... + -.+.+.+....+...+-+.|+.++|.+++++...- ..+-...
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~-~----------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-d~kn~l~ 559 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAV-E----------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-DPKNPLC 559 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhh-c----------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-CCCCchh
Confidence 4445667889999999999999882 2 22446777777888888999999999999999876 3322223
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
-|. -...+...+++++|+..++++++. .| +...|-.+-..|.+.|+.+.|+.-|--+.+...+
T Consensus 560 ~~~-~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 560 KYH-RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHH-HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 333 556667789999999999999864 35 4556667779999999999999999888776555
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.93 E-value=0.00026 Score=53.66 Aligned_cols=98 Identities=7% Similarity=0.029 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-CccH--hHHHHH
Q 036589 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-QRTV--KSLNTL 128 (176)
Q Consensus 52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~l 128 (176)
.....+...+...|++++|.+.+++..+. . +.+...+..+...|...|++++|+..+++.....- .|+. ..|..+
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~-~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALEL-N-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 34445556667788888888888888765 2 23345566777778888888888888887664321 1222 345567
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhc
Q 036589 129 LNALLTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 129 l~~~~~~g~~~~a~~l~~~m~~~ 151 (176)
...+...|++++|.++|++....
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc
Confidence 77788888888888888887543
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.90 E-value=0.0024 Score=48.41 Aligned_cols=146 Identities=12% Similarity=0.001 Sum_probs=84.6
Q ss_pred HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH----hcCChHHHHHHHHHHhhcCCCCCc-hH
Q 036589 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG----RAKMFDEMQQILHQLKHDTRVIPE-EI 88 (176)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~----~~g~~~~a~~~~~~m~~~~g~~~~-~~ 88 (176)
..+...|++++|.+++++. .+. .+.+...+.. ...+. ..+..+.+.+.+.. .. ...|+ ..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~-l~~----------~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~ 115 (355)
T cd05804 51 LSAWIAGDLPKALALLEQL-LDD----------YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WA-PENPDYWY 115 (355)
T ss_pred HHHHHcCCHHHHHHHHHHH-HHH----------CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cC-cCCCCcHH
Confidence 3455677888888887776 221 1223444442 22222 23444555555544 11 22333 33
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccc--hHHHHHHHH
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD--GLCSNLKII 166 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~--~~t~~~li~ 166 (176)
....+...+...|++++|++.+++..+.. +.+...+..+-..+...|++++|.+++++........|+ ...|-.+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 44455667777888888888888777544 334556677777778888888888888776654321023 234556666
Q ss_pred HhhccccCC
Q 036589 167 MNDSQVRVT 175 (176)
Q Consensus 167 ~~~~~g~~~ 175 (176)
.+...|+++
T Consensus 195 ~~~~~G~~~ 203 (355)
T cd05804 195 FYLERGDYE 203 (355)
T ss_pred HHHHCCCHH
Confidence 777777654
No 104
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.88 E-value=0.00063 Score=51.95 Aligned_cols=94 Identities=7% Similarity=-0.083 Sum_probs=78.6
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc
Q 036589 58 ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137 (176)
Q Consensus 58 i~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 137 (176)
...+...|++++|.+.|++..+. . .-+...|..+..+|.+.|++++|+..++...+.. +.+...|..+-.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~-~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL-D-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 45566789999999999999976 2 2356677888999999999999999999998654 3367788888899999999
Q ss_pred HHHHHHHHHHHHhcccc
Q 036589 138 LDRMKELFISFNLKAIA 154 (176)
Q Consensus 138 ~~~a~~l~~~m~~~~~~ 154 (176)
+++|++.|++..+....
T Consensus 86 ~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 86 YQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999876554
No 105
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.87 E-value=7e-05 Score=62.09 Aligned_cols=133 Identities=23% Similarity=0.242 Sum_probs=105.8
Q ss_pred cChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh
Q 036589 20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99 (176)
Q Consensus 20 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~ 99 (176)
+..++|+++|..... ..+-+.+.=|-+.-.++..|+++.|..||.++++. . .-+.-+|-.+..+|..
T Consensus 626 k~~~KAlq~y~kvL~-----------~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa-~-~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLR-----------NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA-T-SDFEDVWLNLAHCYVE 692 (1018)
T ss_pred HHHHHHHHHHHHHHh-----------cCcchhhhccchhhhhhhccCchHHHHHHHHHHHH-H-hhCCceeeeHHHHHHH
Confidence 456789999988722 23447777788888899999999999999999988 2 2345678889999999
Q ss_pred ccCHHHHHHHHHhcc-cCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHH
Q 036589 100 ARLLEHALQVFDEMP-SFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII 166 (176)
Q Consensus 100 ~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~ 166 (176)
.|++..|++.|+... ...-.-++...+.|-.++-++|.+.+|.+.+......-+. -...-||..+.
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~-~~~v~FN~a~v 759 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS-NTSVKFNLALV 759 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc-cchHHhHHHHH
Confidence 999999999999766 4555567888999999999999999999988777666555 44566666543
No 106
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.86 E-value=0.0011 Score=43.95 Aligned_cols=121 Identities=13% Similarity=0.020 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH--hHHHH
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI-PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV--KSLNT 127 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ 127 (176)
...|..++..+. .++...+...++.+....+-. ......-.+...+...|++++|...|+...+....|+. ...-.
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 456777777774 888999999999999873222 12233344668889999999999999999976633332 23445
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 128 LLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 128 ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
|...+...|++++|+..++...... .....+...-+.|.+.|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~---~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA---FKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc---hHHHHHHHHHHHHHHCCCHH
Confidence 6788889999999999997743332 34556777888888888865
No 107
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.84 E-value=0.0009 Score=43.28 Aligned_cols=51 Identities=12% Similarity=-0.001 Sum_probs=29.7
Q ss_pred CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH-hccccccchHHHHHHHHHhh
Q 036589 118 VQRTVKSLNTLLNALLTCGKLDRMKELFISFN-LKAIAVLDGLCSNLKIIMND 169 (176)
Q Consensus 118 ~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~-~~~~~~p~~~t~~~li~~~~ 169 (176)
.-|+..+..+++.+|+.+|++..|.++.+... ..+++ .+..+|..|++-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~-i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIP-IPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Confidence 44566666666666666666666666666653 34455 55666666655443
No 108
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00026 Score=55.75 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=105.6
Q ss_pred HHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---C--CCCchHH
Q 036589 15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---R--VIPEEII 89 (176)
Q Consensus 15 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g--~~~~~~~ 89 (176)
-|.+.++...|.++|.+. .. -.+-|+..++-+.-..-..+.+.+|..+|+...... + ...-..+
T Consensus 389 ey~~t~n~kLAe~Ff~~A-~a----------i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~ 457 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQA-LA----------IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT 457 (611)
T ss_pred HHHHhccHHHHHHHHHHH-Hh----------cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence 466778888888888886 22 223366777777666667888999999888877320 1 1123456
Q ss_pred HHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169 (176)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~ 169 (176)
++.|-.+|.+.+.+++|+..|+...... +-+..++.++--.|...|+++.|.+.|.+-. .+. ||-.+-+.|+..+.
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~-p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALK-PDNIFISELLKLAI 533 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcC-CccHHHHHHHHHHH
Confidence 8889999999999999999999887543 4588889999999999999999999998854 445 78777777776654
Q ss_pred c
Q 036589 170 S 170 (176)
Q Consensus 170 ~ 170 (176)
.
T Consensus 534 e 534 (611)
T KOG1173|consen 534 E 534 (611)
T ss_pred H
Confidence 3
No 109
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.75 E-value=0.0014 Score=49.71 Aligned_cols=129 Identities=10% Similarity=0.049 Sum_probs=93.4
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
.--.++.-+.++|+.++|.++.++..+.. ..|+.. ....+.+.++.+.-++..++-.+.-+-.|
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~----------~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p-- 328 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKRQ----------WDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP-- 328 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhc----------cChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence 34456777888888888888888763332 233311 22334456666666655555444424444
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
..+.+|-..|.+.+.|.+|...|+...+. .|+..+|+.+-++|.+.|+..+|.+++++-...-.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 77888999999999999999999976655 599999999999999999999999999987644333
No 110
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.75 E-value=0.00099 Score=51.68 Aligned_cols=118 Identities=14% Similarity=0.001 Sum_probs=94.1
Q ss_pred HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-hHHHHHHH
Q 036589 16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE-EIIFCNVI 94 (176)
Q Consensus 16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li 94 (176)
+...|++++|+..++.+..+ .+-|+.-+......+.+.++..+|.+-++.+... .|+ ...+-++-
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-----------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a 381 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-----------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLA 381 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHH
Confidence 44578888898888887322 2347888888899999999999999999999976 455 55566788
Q ss_pred HHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589 95 SFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148 (176)
Q Consensus 95 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m 148 (176)
++|.+.|++.+|+.+++...... +-|+..|..|-.+|...|+..++..-..+.
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 99999999999999999887443 568889999999999888877666555443
No 111
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.00077 Score=52.51 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=70.1
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----C
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR----V 83 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g----~ 83 (176)
.|-.+.-+.-|.++++++...|++. .. .++-.+..|+-....+...++|+.|.+.|+...+-.. +
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~-kk----------kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEA-KK----------KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HH----------hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 3334444444556666666666665 22 2344555566666666666666666666666554310 0
Q ss_pred --CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589 84 --IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149 (176)
Q Consensus 84 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~ 149 (176)
.+....--.++-.-.+ +++..|++++++..+.. +.....|-.|-..-...|++++|+++|++-.
T Consensus 499 ~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111111122222222 66666666666665433 1233557777777778888888888887654
No 112
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.71 E-value=0.0027 Score=52.64 Aligned_cols=132 Identities=10% Similarity=-0.008 Sum_probs=99.5
Q ss_pred ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 036589 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG 98 (176)
Q Consensus 19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~ 98 (176)
.|+.++|.+++.+..+. .+-....|.+|...|-..|+.+++...+-..-.. .+-|...|-.+-....
T Consensus 152 rg~~eeA~~i~~EvIkq-----------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ-----------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSE 218 (895)
T ss_pred hCCHHHHHHHHHHHHHh-----------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 49999999999998333 2346788999999999999999988766554433 2345577888888888
Q ss_pred hccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165 (176)
Q Consensus 99 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li 165 (176)
..|.+.+|.-+|.+..+.. +++...+.--...|-+.|+..+|.+.|.++.+...+ .|..-+-.+|
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~d~i 283 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLI 283 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHHHHH
Confidence 8899999999999888665 456666667778888899999999999888876554 4444444333
No 113
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.70 E-value=0.00033 Score=39.87 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=30.4
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF 116 (176)
Q Consensus 63 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 116 (176)
+.|++++|.++|+++... . +-+...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~-~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-N-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-T-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666666666666655 1 124444445666666666666666666666643
No 114
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.68 E-value=0.0019 Score=51.64 Aligned_cols=127 Identities=14% Similarity=0.097 Sum_probs=98.8
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYN-LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
+.-+...|-+.|++++|+++++.. -+. .|+ +..|..-...+...|++.+|.+.++..+.-. .-|.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~a-I~h-----------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~DR 262 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKA-IEH-----------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--LADR 262 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-Hhc-----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hhhH
Confidence 355677888999999999999987 232 344 6678888899999999999999999999762 4577
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH-----hHH---HHHHHHHHhcCcHHHHHHHHHHHH
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV-----KSL---NTLLNALLTCGKLDRMKELFISFN 149 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~---~~ll~~~~~~g~~~~a~~l~~~m~ 149 (176)
.+=+-....+.++|++++|.+++....+.+..|-. .+. .-.-.+|.+.|++..|++-|....
T Consensus 263 yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 263 YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777889999999999999999999876654422 222 344578889999888887665543
No 115
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.68 E-value=0.0033 Score=41.55 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=73.6
Q ss_pred cHHHHHHHHH---HHHhcCChHHHHHHHHHHhhcC-C-CCCch------------------HHHHHHHHHHHhccCHHHH
Q 036589 50 NLLHYDLIIT---KLGRAKMFDEMQQILHQLKHDT-R-VIPEE------------------IIFCNVISFYGRARLLEHA 106 (176)
Q Consensus 50 ~~~~y~~li~---~~~~~g~~~~a~~~~~~m~~~~-g-~~~~~------------------~~~~~li~~~~~~g~~~~a 106 (176)
|...|..++. .....++.+.+...++++.... | +-++. .....++..+...|++++|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 3444555533 2345678888888887777652 1 22221 2223456777789999999
Q ss_pred HHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH-----hccccccchHHHHH
Q 036589 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN-----LKAIAVLDGLCSNL 163 (176)
Q Consensus 107 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~-----~~~~~~p~~~t~~~ 163 (176)
+.+.+.+.... +.+...|-.+|.+|...|+..+|.++|+.+. +.|+. |+..+-..
T Consensus 82 ~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~-Ps~~~~~l 141 (146)
T PF03704_consen 82 LRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE-PSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-----HHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC-cCHHHHHH
Confidence 99999998654 5588899999999999999999999998874 46998 98876543
No 116
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.64 E-value=0.00086 Score=51.23 Aligned_cols=102 Identities=11% Similarity=-0.021 Sum_probs=80.5
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN 92 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~ 92 (176)
...+...|++++|+++|++.. .. .+-+...|..+..+|.+.|++++|...+++..+.. ..+...|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al-~~----------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~ 75 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAI-DL----------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLR 75 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHH-Hh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHH
Confidence 456677899999999999983 32 12367788889999999999999999999998762 235667888
Q ss_pred HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 129 (176)
+..+|...|++++|+..|+...+.. |+-..+...+
T Consensus 76 lg~~~~~lg~~~eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 76 KGTACMKLEEYQTAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 8999999999999999999988654 5544444444
No 117
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.64 E-value=3.6e-05 Score=46.05 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=58.8
Q ss_pred ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 036589 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG 98 (176)
Q Consensus 19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~ 98 (176)
.|+++.|+.+|+++ ... .+..++...+-.+..++.+.|++++|..+++..... . .+....-.+..+|.
T Consensus 2 ~~~y~~Ai~~~~k~-~~~--------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~--~-~~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 2 QGNYENAIKYYEKL-LEL--------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLD--P-SNPDIHYLLARCLL 69 (84)
T ss_dssp TT-HHHHHHHHHHH-HHH--------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHH--H-CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH-HHH--------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCC--C-CCHHHHHHHHHHHH
Confidence 57899999999998 332 111224555666899999999999999999992222 2 23344445689999
Q ss_pred hccCHHHHHHHHHh
Q 036589 99 RARLLEHALQVFDE 112 (176)
Q Consensus 99 ~~g~~~~a~~~~~~ 112 (176)
+.|++++|+++|++
T Consensus 70 ~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 70 KLGKYEEAIKALEK 83 (84)
T ss_dssp HTT-HHHHHHHHHH
T ss_pred HhCCHHHHHHHHhc
Confidence 99999999999975
No 118
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.64 E-value=0.0013 Score=54.38 Aligned_cols=124 Identities=10% Similarity=0.074 Sum_probs=94.5
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH
Q 036589 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126 (176)
Q Consensus 47 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 126 (176)
..-++..|-.+..++...|++.+|.++|..+... ...-+...|--+..+|-..|..++|++.|+..+... +-+...--
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri 487 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARI 487 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhh
Confidence 3446677889999999999999999999999988 455568899999999999999999999999988543 22444455
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHH--------hccccccchHHHHHHHHHhhcccc
Q 036589 127 TLLNALLTCGKLDRMKELFISFN--------LKAIAVLDGLCSNLKIIMNDSQVR 173 (176)
Q Consensus 127 ~ll~~~~~~g~~~~a~~l~~~m~--------~~~~~~p~~~t~~~li~~~~~~g~ 173 (176)
.|-..+-+.|+.++|.+.+..+. ...+. |+...--...+.+...|+
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~-~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE-PERRILAHRCDILFQVGK 541 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc-HHHHHHHHHHHHHHHhhh
Confidence 66677889999999999998864 23344 555444444444544444
No 119
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.62 E-value=0.0005 Score=38.78 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=35.9
Q ss_pred HHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589 94 ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 94 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~ 151 (176)
...+.+.|++++|+..|++..+.. +-+...+..+-.++...|++++|..+|++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666677777777777766544 225555666666667777777777777766553
No 120
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.61 E-value=0.002 Score=43.91 Aligned_cols=84 Identities=10% Similarity=-0.033 Sum_probs=62.8
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY-NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE 86 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~ 86 (176)
.+..+...+.+.|++++|...|++..... +. .+ ....|..+...+.+.|++++|...+++..+. . .-+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p~~ 105 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLE--------ED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-N-PKQ 105 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------hc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-ccc
Confidence 46667778888999999999999872221 11 11 2467888999999999999999999999876 2 224
Q ss_pred hHHHHHHHHHHHhccC
Q 036589 87 EIIFCNVISFYGRARL 102 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~ 102 (176)
...+..+..+|...|+
T Consensus 106 ~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 106 PSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 5566667777777776
No 121
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.61 E-value=0.0018 Score=43.89 Aligned_cols=95 Identities=12% Similarity=-0.132 Sum_probs=67.5
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
.|..+...+...|++++|+..|+...... ........+|..+...+...|++++|.+.++...+.. +...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~--------~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~ 106 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLE--------IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLP 106 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcH
Confidence 45667777888999999999999972221 1111134588889999999999999999999988652 2334
Q ss_pred HHHHHHHHHHH-------hccCHHHHHHHHHh
Q 036589 88 IIFCNVISFYG-------RARLLEHALQVFDE 112 (176)
Q Consensus 88 ~~~~~li~~~~-------~~g~~~~a~~~~~~ 112 (176)
.++..+...+. +.|+++.|...+++
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 55666666666 77787755555543
No 122
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.0022 Score=53.68 Aligned_cols=151 Identities=11% Similarity=0.045 Sum_probs=107.8
Q ss_pred CCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589 2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81 (176)
Q Consensus 2 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~ 81 (176)
+.-+|+..+.|-+.|.-.|++..++.+...+.... ..-..-..+|..+..+|-..|++++|...|.+..+.
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t--------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~- 336 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT--------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA- 336 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-
Confidence 34578889999999999999999999988873332 121233456888999999999999999999988865
Q ss_pred CCCCchHHH--HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC----cHHHHHHHHHHHHhccccc
Q 036589 82 RVIPEEIIF--CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG----KLDRMKELFISFNLKAIAV 155 (176)
Q Consensus 82 g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~a~~l~~~m~~~~~~~ 155 (176)
.++.+++ --|.+.|.+.|+++.+...|+...... +-+..+..+|-..|+..+ ..++|..++.+..+....
T Consensus 337 --~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~- 412 (1018)
T KOG2002|consen 337 --DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV- 412 (1018)
T ss_pred --CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-
Confidence 3444344 347899999999999999999988543 334555555556666654 567777777766655432
Q ss_pred cchHHHHHHHH
Q 036589 156 LDGLCSNLKII 166 (176)
Q Consensus 156 p~~~t~~~li~ 166 (176)
|...|-.+-.
T Consensus 413 -d~~a~l~laq 422 (1018)
T KOG2002|consen 413 -DSEAWLELAQ 422 (1018)
T ss_pred -cHHHHHHHHH
Confidence 5555544433
No 123
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0049 Score=48.87 Aligned_cols=157 Identities=11% Similarity=0.026 Sum_probs=107.3
Q ss_pred CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH---------------------
Q 036589 4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG--------------------- 62 (176)
Q Consensus 4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~--------------------- 62 (176)
.++++|-++--.|.-.|+.++|.+.|... ..-. +.+.| .|-....+|+
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKa-t~lD-------~~fgp---aWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKA-TTLD-------PTFGP---AWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHH-hhcC-------ccccH---HHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 46789999988888899999999999886 3332 23333 2222333333
Q ss_pred -------------hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhccc----CC--CCccHh
Q 036589 63 -------------RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS----FN--VQRTVK 123 (176)
Q Consensus 63 -------------~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~--~~p~~~ 123 (176)
+.+.+..|.+.|.+.... .+-|....+-+--.....+.+.+|..+|+..+. .+ ...-..
T Consensus 379 ~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p 456 (611)
T KOG1173|consen 379 CHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP 456 (611)
T ss_pred CcchHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH
Confidence 345556666666655533 233445555555555567889999999887651 11 112445
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 124 SLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
+++.|-..|.+.+++++|+..|+........ |..++..+--.|.-.|.+|
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k--~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPK--DASTHASIGYIYHLLGNLD 506 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC--chhHHHHHHHHHHHhcChH
Confidence 6888899999999999999999999887776 7888888877777777664
No 124
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.0027 Score=49.37 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=64.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC
Q 036589 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136 (176)
Q Consensus 57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 136 (176)
+.+.|-...+..+|.+++-+...- +.-|....+-|...|-+.|+-.+|.+++-+--+ =++.|..+...|-..|....
T Consensus 564 ianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhH
Confidence 333333344444444444333321 233444555566666666666666665543321 12446666777777777777
Q ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589 137 KLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS 170 (176)
Q Consensus 137 ~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 170 (176)
.+++++..|++. .-+. |+..-|..||..|.|
T Consensus 641 f~ekai~y~eka--aliq-p~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 641 FSEKAINYFEKA--ALIQ-PNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHHHH--HhcC-ccHHHHHHHHHHHHH
Confidence 788888888763 3456 999999999988874
No 125
>PLN02789 farnesyltranstransferase
Probab=97.50 E-value=0.0088 Score=45.06 Aligned_cols=147 Identities=10% Similarity=0.011 Sum_probs=105.9
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCCCch
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK-MFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
+..+-..+...++.++|+.+.+++. .. .+-+..+|+.--.++...| .++++...++++.+. . .-+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI-~l----------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-n-pkny 106 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVI-RL----------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-N-PKNY 106 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHH-HH----------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-C-Ccch
Confidence 3455566666789999999999872 21 1124445665556666777 579999999999977 2 2344
Q ss_pred HHHHHHHHHHHhccCH--HHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589 88 IIFCNVISFYGRARLL--EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li 165 (176)
.+|+..-..+.+.|+. ++++.+++++.+.. +-|..+|+.---.+.+.|+++++++.++++.+.++. +...|+...
T Consensus 107 qaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~--N~sAW~~R~ 183 (320)
T PLN02789 107 QIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR--NNSAWNQRY 183 (320)
T ss_pred HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--chhHHHHHH
Confidence 4577665556666663 67888888888655 457888998888888999999999999999998876 666776665
Q ss_pred HHhhcc
Q 036589 166 IMNDSQ 171 (176)
Q Consensus 166 ~~~~~~ 171 (176)
..+.+.
T Consensus 184 ~vl~~~ 189 (320)
T PLN02789 184 FVITRS 189 (320)
T ss_pred HHHHhc
Confidence 555444
No 126
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.47 E-value=0.00061 Score=38.70 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=49.0
Q ss_pred HhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK 164 (176)
Q Consensus 98 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l 164 (176)
.+.|++++|+++|+++.+.. +-+...+-.+..+|.+.|++++|.++++.+.... |+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD---PDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG---TTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 46799999999999998654 3377778889999999999999999999988753 443444433
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.42 E-value=0.0058 Score=53.24 Aligned_cols=131 Identities=11% Similarity=0.081 Sum_probs=87.6
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC---cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY---NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~ 81 (176)
+.+.|-.-|......+++++|.+++++.. .. -+++- ....|.++++.-..-|.-+...++|++..+.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL-~t--------IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy- 1526 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERAL-KT--------INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY- 1526 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHh-hh--------CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-
Confidence 45678888888888889888888888872 21 22221 3446666776666667667777777777765
Q ss_pred CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc-cCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMP-SFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149 (176)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~ 149 (176)
. --...|..|...|.+.+.+++|.++|+.|. ..| -....|..++..+.++++-+.|.+++.+..
T Consensus 1527 -c-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1527 -C-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred -c-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 1 123456677777888888888888888776 333 355667777777777766666666665543
No 128
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.42 E-value=0.0012 Score=37.56 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC-cHHHHHHHHHHHH
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG-KLDRMKELFISFN 149 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~l~~~m~ 149 (176)
+|..+-..+...|++++|+..|++..+.. +-+...|..+-.++.+.| ++++|++.|+...
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444332 123344444444444444 3444444444433
No 129
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.41 E-value=0.0075 Score=48.40 Aligned_cols=138 Identities=7% Similarity=-0.124 Sum_probs=91.1
Q ss_pred CCCCCHHHHHHHHHhcc-----ChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcC--------ChHHH
Q 036589 4 AKPTSPFRLASLLHLQK-----HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK--------MFDEM 70 (176)
Q Consensus 4 p~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g--------~~~~a 70 (176)
.++..|...+++..... +..+|.++|++. -+.. ++ ....|..+..++.... +...+
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~A-i~ld-------P~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a 403 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEI-LKSE-------PD---FTYAQAEKALADIVRHSQQPLDEKQLAAL 403 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHhC-------CC---cHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 34456777777655432 366899999998 3321 22 3455555544443321 12233
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 71 ~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
.+..++.........+...|..+--.....|++++|...|++..+.+ |+...|..+-..+...|+.++|.+.+.+...
T Consensus 404 ~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 404 STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33333332221123344667777666667899999999999999776 7888999999999999999999999999876
Q ss_pred cccc
Q 036589 151 KAIA 154 (176)
Q Consensus 151 ~~~~ 154 (176)
....
T Consensus 482 L~P~ 485 (517)
T PRK10153 482 LRPG 485 (517)
T ss_pred cCCC
Confidence 6554
No 130
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.34 E-value=0.0018 Score=42.85 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc-----cCCCCccHhHHH
Q 036589 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP-----SFNVQRTVKSLN 126 (176)
Q Consensus 54 y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~ 126 (176)
...++..+...|++++|.++.+.+... -+.+...|..+|.+|...|+..+|.++|+.+. +.|+.|+..+-.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 344455566789999999999999987 35588899999999999999999999998874 478888876543
No 131
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.34 E-value=0.0013 Score=37.83 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=32.8
Q ss_pred HHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589 95 SFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153 (176)
Q Consensus 95 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~ 153 (176)
..|.+.+++++|+++++.+.... +.+...|...-.++.+.|++++|.+.|+...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34555666666666666665443 22444455555666666666666666666655433
No 132
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.0059 Score=47.78 Aligned_cols=153 Identities=11% Similarity=0.103 Sum_probs=81.6
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY-NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV 83 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~ 83 (176)
++.+|.+--..+.-.+++++|..=|+.. .. +.| +...|--+--+.-+.+.+++++..|++.++. +
T Consensus 393 n~dvYyHRgQm~flL~q~e~A~aDF~Ka-i~-----------L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--F 458 (606)
T KOG0547|consen 393 NPDVYYHRGQMRFLLQQYEEAIADFQKA-IS-----------LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--F 458 (606)
T ss_pred CCchhHhHHHHHHHHHHHHHHHHHHHHH-hh-----------cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--C
Confidence 3444444444444455555555555554 11 111 3333433333333666777777777777766 4
Q ss_pred CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC-----CCccHhHH--HHHHHHHHhcCcHHHHHHHHHHHHhcccccc
Q 036589 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN-----VQRTVKSL--NTLLNALLTCGKLDRMKELFISFNLKAIAVL 156 (176)
Q Consensus 84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~--~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p 156 (176)
+--...||-....+...+++++|++.|+...+.. +-.+..++ -.++ .+--.+++.+|..|++...+....
T Consensus 459 P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpk-- 535 (606)
T KOG0547|consen 459 PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPK-- 535 (606)
T ss_pred CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCch--
Confidence 4445666767777777777777777777655321 11111111 1111 111347777777777777665554
Q ss_pred chHHHHHHHHHhhccccC
Q 036589 157 DGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 157 ~~~t~~~li~~~~~~g~~ 174 (176)
....|..|-..-...|+.
T Consensus 536 ce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKI 553 (606)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 445555555555544443
No 133
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.31 E-value=0.017 Score=36.98 Aligned_cols=106 Identities=11% Similarity=-0.032 Sum_probs=78.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCc--hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc---HhHH-HHHHH
Q 036589 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPE--EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT---VKSL-NTLLN 130 (176)
Q Consensus 57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~-~~ll~ 130 (176)
+-.++-..|+.++|..+|++.... |.... ...+-.+-..|...|++++|+.+|++....- |+ .... ..+--
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHH
Confidence 445667889999999999999998 76655 3455667888999999999999999887532 43 2222 22335
Q ss_pred HHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589 131 ALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS 170 (176)
Q Consensus 131 ~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 170 (176)
++...|+.++|.+.+-.... ++...|.-=|..|+.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence 67788999999999877665 455577777777754
No 134
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.30 E-value=0.0017 Score=36.57 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=49.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF 116 (176)
Q Consensus 57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 116 (176)
+...+.+.|++++|.+.|+++.+. . .-+...+..+-.++...|++++|...|++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~-~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ-D-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC-S-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788999999999999999988 3 337778888999999999999999999998743
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.27 E-value=0.004 Score=52.64 Aligned_cols=133 Identities=6% Similarity=-0.008 Sum_probs=92.4
Q ss_pred CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589 4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV 83 (176)
Q Consensus 4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~ 83 (176)
.+...|..|+..+.+.+++++|.++.+.. ... .+-.+....|. ...+.+.++.+++..+ .+.....-
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~-l~~--------~P~~i~~yy~~--G~l~~q~~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEH-LKE--------HKKSISALYIS--GILSLSRRPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHh--------CCcceehHHHH--HHHHHhhcchhhhhhh--hhhhhccc
Confidence 34456888999999999999999999875 221 22233333333 3355555555555444 22222010
Q ss_pred -----------------CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHH
Q 036589 84 -----------------IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146 (176)
Q Consensus 84 -----------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~ 146 (176)
.-+...+-.+..+|-+.|+.++|.++++++.+.. .-|....|.+...|... ++++|.+++.
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 1122455568888999999999999999999777 56899999999999999 9999998888
Q ss_pred HHHhc
Q 036589 147 SFNLK 151 (176)
Q Consensus 147 ~m~~~ 151 (176)
+..+.
T Consensus 174 KAV~~ 178 (906)
T PRK14720 174 KAIYR 178 (906)
T ss_pred HHHHH
Confidence 77654
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.014 Score=42.00 Aligned_cols=143 Identities=10% Similarity=-0.014 Sum_probs=89.1
Q ss_pred ccChhHHHHhhcCCCCCCCCCCCCCCCC-CCCcHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH-HHHHH
Q 036589 19 QKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLL-HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF-CNVIS 95 (176)
Q Consensus 19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~-~~li~ 95 (176)
..+.++.++++.++..... .+ ..++.. .|-.++.+....|+.+.|..+++++.....-.+-+.-+ ..++
T Consensus 25 ~rnseevv~l~~~~~~~~k-------~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~l- 96 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSK-------SGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLL- 96 (289)
T ss_pred ccCHHHHHHHHHHHHHHhh-------hcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHH-
Confidence 4678888999888833321 23 445554 46677777888899999999999988773222222222 2233
Q ss_pred HHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589 96 FYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 96 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 174 (176)
-..|++++|+++++.+.+.. +.|.+++--=+-..-..|+-.+|++-+.+..+.=. .|...|--+-+.|...|++
T Consensus 97 --Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~--~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 97 --EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM--NDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred --HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhHhHH
Confidence 34788999999999888655 44555555555555555555566655555554322 3666666666666655544
No 137
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.25 E-value=0.003 Score=46.23 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcH----------------HHHHHHHHHHHhccccccchHHHHHHHH
Q 036589 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL----------------DRMKELFISFNLKAIAVLDGLCSNLKII 166 (176)
Q Consensus 103 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~----------------~~a~~l~~~m~~~~~~~p~~~t~~~li~ 166 (176)
++=....++.|.+.|+..|..+|+.||+.+-+...+ +=+++++++|...|+. ||-.+-..|++
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVm-PdkE~e~~lvn 166 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVM-PDKEIEDILVN 166 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCC-CchHHHHHHHH
Confidence 333444445555555555555555555555443321 2255677777777777 77777777777
Q ss_pred Hhhccc
Q 036589 167 MNDSQV 172 (176)
Q Consensus 167 ~~~~~g 172 (176)
++.+.+
T Consensus 167 ~FGr~~ 172 (406)
T KOG3941|consen 167 AFGRWN 172 (406)
T ss_pred Hhcccc
Confidence 776654
No 138
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.027 Score=40.88 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=93.0
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCCchH
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRVIPEEI 88 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~g~~~~~~ 88 (176)
...+.+..+++.|.+.++.| .... +-.+.+-|.+++.+ .+.+.+|.-+|++|.+. ..|+.-
T Consensus 144 VqI~lk~~r~d~A~~~lk~m-q~id------------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~ 208 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKM-QQID------------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPL 208 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH-Hccc------------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChH
Confidence 45567788899999999999 5542 56677766666654 45689999999999975 678999
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc-HHHHHHHHHHHHhcccc
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK-LDRMKELFISFNLKAIA 154 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~a~~l~~~m~~~~~~ 154 (176)
+.|-..-++...|++++|..++++....... +..+...+|-+-...|. .+-..+.+..++.....
T Consensus 209 llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 209 LLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999865432 45555555555555555 44556677777665444
No 139
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.24 E-value=0.021 Score=45.78 Aligned_cols=145 Identities=10% Similarity=0.103 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHHhccChhHHHHhhcCCCCC---CCCCC-CCCCCCCCCcHHHH--HHHHHHHHhcCChHHHHHHHHHHhh
Q 036589 6 PTSPFRLASLLHLQKHPKLALQLFKNPNPN---ANDTE-APPLKPFRYNLLHY--DLIITKLGRAKMFDEMQQILHQLKH 79 (176)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~y--~~li~~~~~~g~~~~a~~~~~~m~~ 79 (176)
|-.|+.|-..|....+..-..+++..+... .+... ......-+|+...| .-+.+.|-..|++++|....++...
T Consensus 143 PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 143 PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 345666666666555555555555554111 10000 00012334555444 5567778899999999999999886
Q ss_pred cCCCCCc-hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 80 DTRVIPE-EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 80 ~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
. .|+ ...|..-.+.|-+.|++.+|.+.++...+.. .-|...=+-....+.++|++++|.+++......+..
T Consensus 223 h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~ 294 (517)
T PF12569_consen 223 H---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD 294 (517)
T ss_pred c---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC
Confidence 6 455 5577778899999999999999999988655 236666667778889999999999999988765543
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.23 E-value=0.0029 Score=35.98 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcc-CHHHHHHHHHhccc
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRAR-LLEHALQVFDEMPS 115 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 115 (176)
+...|..+...+...|++++|...|++..+. . +-+...|..+-.+|.+.| ++++|++.|++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-D-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-S-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5778999999999999999999999999987 2 346778888999999999 79999999988764
No 141
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.23 E-value=0.001 Score=54.51 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=78.2
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN 92 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~ 92 (176)
+.+-.+...+.+|+.+++.+ ..+. .-.--|..+.+-|+..|+++.|+++|.+.- .++-
T Consensus 739 ieaai~akew~kai~ildni-qdqk-----------~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~d 796 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNI-QDQK-----------TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKD 796 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHh-hhhc-----------cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHH
Confidence 34455567777888887777 4431 123347777888899999999988886543 3467
Q ss_pred HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m 148 (176)
-|.+|.++|+|++|.++-++... -..++..|-+-..-+-++|++.+|.+++-..
T Consensus 797 ai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 797 AIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 78889999999999888777652 2345566666666677788888887776443
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.19 E-value=0.015 Score=46.12 Aligned_cols=119 Identities=13% Similarity=0.210 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhccCHHHHHHHHHh-cccCCCCccHhHHHHH
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDE-MPSFNVQRTVKSLNTL 128 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~~~~p~~~~~~~l 128 (176)
..+|...|+...+..-+..|..+|.+.++. +..+ ++...+++|..|| .++...|.++|+. |+..| -++.--+..
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~Y 441 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKY 441 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHH
Confidence 346777788888888899999999999999 6666 8888999999886 5788999999995 55554 445556788
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhccccccc--hHHHHHHHHHhhccccC
Q 036589 129 LNALLTCGKLDRMKELFISFNLKAIAVLD--GLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 129 l~~~~~~g~~~~a~~l~~~m~~~~~~~p~--~~t~~~li~~~~~~g~~ 174 (176)
++-+.+.|+=..+..||++....+++ || ...|..+|+-=..-|++
T Consensus 442 ldfL~~lNdd~N~R~LFEr~l~s~l~-~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 442 LDFLSHLNDDNNARALFERVLTSVLS-ADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHHHhCcchhHHHHHHHHHhccCC-hhhhHHHHHHHHHHHHhcccH
Confidence 89999999999999999999888665 55 57899998877776654
No 143
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.17 E-value=0.011 Score=43.31 Aligned_cols=102 Identities=11% Similarity=0.149 Sum_probs=81.7
Q ss_pred CCCcHHHHHHHHHHHHhc-----CChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccC----------------HHH
Q 036589 47 FRYNLLHYDLIITKLGRA-----KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL----------------LEH 105 (176)
Q Consensus 47 ~~~~~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~----------------~~~ 105 (176)
-.-|-.+|-+++..+... ++++-...-++.|++- |+..|..+|+.||+.+-+-.- -+-
T Consensus 63 ~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~ey-GVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 63 EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEY-GVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh-cchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 344777888888888754 6677777888899988 999999999999988765321 245
Q ss_pred HHHHHHhcccCCCCccHhHHHHHHHHHHhcCcH-HHHHHHHHHHH
Q 036589 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL-DRMKELFISFN 149 (176)
Q Consensus 106 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~l~~~m~ 149 (176)
++.++++|...|+.||-.+-..|+++|++.+.. .+..++.--|.
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 789999999999999999999999999998873 45556655554
No 144
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.15 E-value=0.013 Score=44.04 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=83.7
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
|.+..|..+...|+...|.++-++.. .|+-.-|-..+.++++.++|++.+++-.. ++ ..
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk--------------v~dkrfw~lki~aLa~~~~w~eL~~fa~s-kK------sP 237 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK--------------VPDKRFWWLKIKALAENKDWDELEKFAKS-KK------SP 237 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC--------------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CC------CC
Confidence 66777888888999999999887772 25888899999999999999988776443 21 23
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHH
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~ 145 (176)
+-|-.++.+|.+.|...+|..+...+. +..-+..|.+.|++.+|.+.-
T Consensus 238 IGyepFv~~~~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 238 IGYEPFVEACLKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CChHHHHHHHHHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence 678888999999999999998888732 356678888899988887653
No 145
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.15 E-value=0.0027 Score=37.10 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhc---CCC-CCc-hHHHHHHHHHHHhccCHHHHHHHHHh
Q 036589 53 HYDLIITKLGRAKMFDEMQQILHQLKHD---TRV-IPE-EIIFCNVISFYGRARLLEHALQVFDE 112 (176)
Q Consensus 53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~---~g~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 112 (176)
+|+.+...|...|++++|+..|++..+- .|- .|+ ..+++.+-.+|.+.|++++|++.|++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555555555555555555544422 111 111 33444455555555555555555544
No 146
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.14 E-value=0.02 Score=41.94 Aligned_cols=101 Identities=9% Similarity=0.026 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch----HHHHHHHHHHHhccCHHHHHHHHHhcccCC--CCccHhH
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE----IIFCNVISFYGRARLLEHALQVFDEMPSFN--VQRTVKS 124 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~ 124 (176)
...|...+....+.|++++|...|+.+.+.+ |+. ..+-.+..+|...|++++|...|+.+.+.- .......
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 4456666666677899999999999999873 332 355668899999999999999999998422 1122344
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 125 LNTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
+-.+...+...|+.++|.++|+...+....
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 445566778899999999999999876443
No 147
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.012 Score=43.26 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=80.9
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcH
Q 036589 59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138 (176)
Q Consensus 59 ~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 138 (176)
+-..+.+++.+|...|.+..+- ..-|.+-|..-..+|++.|.++.|++-.+...+.. ..-..+|..|-.+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 3455789999999999999966 24567778889999999999999999998887543 33567899999999999999
Q ss_pred HHHHHHHHHHHhccccccchHHHHHHH
Q 036589 139 DRMKELFISFNLKAIAVLDGLCSNLKI 165 (176)
Q Consensus 139 ~~a~~l~~~m~~~~~~~p~~~t~~~li 165 (176)
++|++-|++..+. . |+-.+|-.=+
T Consensus 166 ~~A~~aykKaLel--d-P~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--D-PDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhcc--C-CCcHHHHHHH
Confidence 9999999987654 4 6666664433
No 148
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.11 E-value=0.003 Score=36.89 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHhccc----CCC-Cc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 87 EIIFCNVISFYGRARLLEHALQVFDEMPS----FNV-QR-TVKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
..+++.+-..|.+.|++++|+..|++..+ .|- .| ...+++.+-..+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45788999999999999999999998763 221 12 267788999999999999999999988654
No 149
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.09 E-value=0.022 Score=44.47 Aligned_cols=67 Identities=6% Similarity=-0.182 Sum_probs=58.1
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch----HHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE----IIFCNVISFYGRARLLEHALQVFDEMPSF 116 (176)
Q Consensus 47 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 116 (176)
-+.+...|+.+..+|.+.|++++|...|++..+. .|+. .+|..+..+|...|+.++|++.|++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457788999999999999999999999998865 4553 46889999999999999999999998864
No 150
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.0055 Score=46.28 Aligned_cols=127 Identities=12% Similarity=0.071 Sum_probs=77.9
Q ss_pred HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHH-----HHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589 10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRVI 84 (176)
Q Consensus 10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-----li~~~~~~g~~~~a~~~~~~m~~~~g~~ 84 (176)
-.|+-.|.+.+++++|..+.+++ .+..|-.+..-. +.+-.....+...|++.|+-.-++ +..
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl------------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~S-a~e 355 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDL------------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGES-ALE 355 (557)
T ss_pred hhheeeecccccHHHHHHHHhhc------------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc-ccc
Confidence 34666788999999999999999 333443333222 222222334566677777666555 322
Q ss_pred Cch--------------------HHHH---------------HHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH-HH
Q 036589 85 PEE--------------------IIFC---------------NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN-TL 128 (176)
Q Consensus 85 ~~~--------------------~~~~---------------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~l 128 (176)
-|+ .+|- .+.++++..|.+.+|+++|-......++ |-.+|- .|
T Consensus 356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~L 434 (557)
T KOG3785|consen 356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSML 434 (557)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHH
Confidence 222 1111 2567777788888888888777654433 444444 44
Q ss_pred HHHHHhcCcHHHHHHHHHHHHh
Q 036589 129 LNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 129 l~~~~~~g~~~~a~~l~~~m~~ 150 (176)
.++|.++++...|++++-.+..
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~t 456 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTNT 456 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcCC
Confidence 4778888888888887766543
No 151
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.08 E-value=0.0028 Score=51.57 Aligned_cols=133 Identities=9% Similarity=-0.016 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CC--
Q 036589 7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD--TR-- 82 (176)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--~g-- 82 (176)
..|-.++..|...|+.++|..+..+- .++ +||+.-|..+.+.....--+++|.++.++.... +.
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~-lek-----------~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~ 492 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQE-LEK-----------DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLA 492 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHH-hcC-----------CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhc
Confidence 34566677777777777776666655 221 345666665555444433344444444332221 00
Q ss_pred ---------------------C-CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHH
Q 036589 83 ---------------------V-IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140 (176)
Q Consensus 83 ---------------------~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 140 (176)
+ ..-..+|-..--+..+.++++.|.+.|..-+... +-+...||.+-.+|.+.++-.+
T Consensus 493 ~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 493 LLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred cccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHH
Confidence 0 0011223233334444555666666665554321 2244556666666666666666
Q ss_pred HHHHHHHHHhcc
Q 036589 141 MKELFISFNLKA 152 (176)
Q Consensus 141 a~~l~~~m~~~~ 152 (176)
|...+.+..+.+
T Consensus 572 a~~~l~EAlKcn 583 (777)
T KOG1128|consen 572 AFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcC
Confidence 666666655544
No 152
>PLN02789 farnesyltranstransferase
Probab=97.02 E-value=0.035 Score=41.90 Aligned_cols=148 Identities=8% Similarity=-0.113 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHhcc-ChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCCh--HHHHHHHHHHhhcCCC
Q 036589 7 TSPFRLASLLHLQK-HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF--DEMQQILHQLKHDTRV 83 (176)
Q Consensus 7 ~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~--~~a~~~~~~m~~~~g~ 83 (176)
..|+..-..+...| ++++++..++.+... .+-+..+|+.--..+.+.|+. +++..+++++.+. -
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~-----------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--d 138 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAED-----------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--D 138 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHH-----------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--C
Confidence 35555555666666 678999999887222 122555676555555566653 6778888888865 2
Q ss_pred CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc---Cc----HHHHHHHHHHHHhcccccc
Q 036589 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC---GK----LDRMKELFISFNLKAIAVL 156 (176)
Q Consensus 84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~----~~~a~~l~~~m~~~~~~~p 156 (176)
.-+...|+....++.+.|+++++++.++++.+.+ ..|...|+.....+.+. |. .++..+...+..+..+.
T Consensus 139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-- 215 (320)
T PLN02789 139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-- 215 (320)
T ss_pred cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC--
Confidence 4578889988889999999999999999998766 34666677665555443 22 24566777677776665
Q ss_pred chHHHHHHHHHhhc
Q 036589 157 DGLCSNLKIIMNDS 170 (176)
Q Consensus 157 ~~~t~~~li~~~~~ 170 (176)
|...|+.+-..+..
T Consensus 216 N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 216 NESPWRYLRGLFKD 229 (320)
T ss_pred CcCHHHHHHHHHhc
Confidence 66777766666655
No 153
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.01 E-value=0.034 Score=35.64 Aligned_cols=108 Identities=12% Similarity=0.003 Sum_probs=73.2
Q ss_pred HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CCchH
Q 036589 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYN--LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV-IPEEI 88 (176)
Q Consensus 12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~~~~~ 88 (176)
+-.++-..|+.++|+.+|++. ... +.... ...+-.+..++...|++++|..++++......- ..+..
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~A-l~~---------gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~ 76 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRA-LAA---------GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAA 76 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHH-HHc---------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHH
Confidence 445677789999999999998 332 22222 345666788889999999999999999876211 11222
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 133 (176)
....+.-++...|+.++|++.+-.... ++...|.--|..|.
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 223344577889999999998876663 44445555555544
No 154
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.97 E-value=0.055 Score=37.47 Aligned_cols=124 Identities=11% Similarity=0.014 Sum_probs=96.6
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-CccHhHH
Q 036589 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-QRTVKSL 125 (176)
Q Consensus 47 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~ 125 (176)
..|++..--.|..++.+.|+..+|...|++...- -+.-|....-.+.++....+++..|...++++-+..- ..++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3468888888999999999999999999999876 5778888889999999999999999999998876541 1133344
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589 126 NTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 126 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 174 (176)
-.+-..|...|....|..-|+-....... |...+|- -..+.++||.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y--~e~La~qgr~ 209 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYY--AEMLAKQGRL 209 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHH--HHHHHHhcch
Confidence 55668889999999999999998877655 5555543 2334555544
No 155
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.085 Score=38.18 Aligned_cols=128 Identities=11% Similarity=0.051 Sum_probs=68.6
Q ss_pred HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHH
Q 036589 10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEII 89 (176)
Q Consensus 10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~ 89 (176)
-.++-+..-.|+.+.|...++.+ ..+. +-.+-+.-... --+--.|++++|+++|+.+.+. . +.|.++
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L-~~~f--------p~S~RV~~lka--m~lEa~~~~~~A~e~y~~lL~d-d-pt~~v~ 122 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQL-RDRF--------PGSKRVGKLKA--MLLEATGNYKEAIEYYESLLED-D-PTDTVI 122 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHH-HHhC--------CCChhHHHHHH--HHHHHhhchhhHHHHHHHHhcc-C-cchhHH
Confidence 34455555667777777777776 3321 11111111111 1123456677777777777766 2 445555
Q ss_pred HHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~ 151 (176)
+---+...-..|.-.+|++.+.+..+ -+..|...|.-+-..|...|++++|.=.++++.-.
T Consensus 123 ~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 123 RKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 55444444445554455554444331 12356666666666666666666666666666543
No 156
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.92 E-value=0.064 Score=43.83 Aligned_cols=147 Identities=12% Similarity=-0.024 Sum_probs=84.1
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
.|-.-+....+...+++|..+|.+.. ...|+...|..-++.-.-.+..++|.+++++..+.+ |+-
T Consensus 620 iwlaavKle~en~e~eraR~llakar------------~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f---p~f 684 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKAR------------SISGTERVWMKSANLERYLDNVEEALRLLEEALKSF---PDF 684 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHh------------ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC---Cch
Confidence 34445555556666666666666661 223466666666666666666777777766666552 222
Q ss_pred -HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhH-HHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589 88 -IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS-LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165 (176)
Q Consensus 88 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li 165 (176)
-.|-.+-+.+-..++++.|...|..=.+ .-|+... |-.|.+.=-+.|.+-+|..+|++-+-.++. +..-|-..|
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk--~~~lwle~I 760 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK--NALLWLESI 760 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC--cchhHHHHH
Confidence 3344444555555555555555543221 1244333 334444445667777777777777666665 666676666
Q ss_pred HHhhcccc
Q 036589 166 IMNDSQVR 173 (176)
Q Consensus 166 ~~~~~~g~ 173 (176)
..-.|.|.
T Consensus 761 r~ElR~gn 768 (913)
T KOG0495|consen 761 RMELRAGN 768 (913)
T ss_pred HHHHHcCC
Confidence 66666654
No 157
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.91 E-value=0.031 Score=45.37 Aligned_cols=147 Identities=10% Similarity=0.047 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589 7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE 86 (176)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~ 86 (176)
..|-.-+..+..+|++......|+..... -++..-...|...+......+-++.+.++|....+- .|.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALra---------LpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---~P~ 170 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRA---------LPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---APE 170 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHh---------CchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---CHH
Confidence 34555667777788888888888776222 234444556777777777788888888888777654 232
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHhcccCC----------------------------------------C--Ccc--H
Q 036589 87 EIIFCNVISFYGRARLLEHALQVFDEMPSFN----------------------------------------V--QRT--V 122 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----------------------------------------~--~p~--~ 122 (176)
. -+--|..+++.+++++|-+.+...+... + -+| .
T Consensus 171 ~--~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g 248 (835)
T KOG2047|consen 171 A--REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLG 248 (835)
T ss_pred H--HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHH
Confidence 2 4556677777777777776665554211 0 011 2
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589 123 KSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS 170 (176)
Q Consensus 123 ~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 170 (176)
..|++|.+-|.+.|++++|.++|++-.+.- -+..-|+.+.++|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v---~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV---MTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh---eehhhHHHHHHHHHH
Confidence 458999999999999999999999876642 356667777777764
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.89 E-value=0.014 Score=42.74 Aligned_cols=100 Identities=9% Similarity=-0.087 Sum_probs=71.9
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CCch
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV-IPEE 87 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~~~~ 87 (176)
|..-+..+.+.|++++|...|+.+.... +.-......+..+..+|...|++++|...|+.+.....- ....
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--------P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--------PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 4455555567899999999999983322 221222346667999999999999999999999876321 1123
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSF 116 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 116 (176)
..+-.+...+.+.|+.++|...|+++.+.
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444667788999999999999988854
No 159
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.86 E-value=0.019 Score=44.75 Aligned_cols=86 Identities=7% Similarity=-0.189 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH----hHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-cc------
Q 036589 86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV----KSLNTLLNALLTCGKLDRMKELFISFNLKA-IA------ 154 (176)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~-~~------ 154 (176)
+...++.+-.+|.+.|++++|+..|++..+.. |+. .+|..+-.+|.+.|++++|++.+++..+.+ ..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~ 151 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILN 151 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHh
Confidence 55788899999999999999999999987654 664 469999999999999999999999987741 11
Q ss_pred ccch------HHHHHHHHHhhcccc
Q 036589 155 VLDG------LCSNLKIIMNDSQVR 173 (176)
Q Consensus 155 ~p~~------~t~~~li~~~~~~g~ 173 (176)
.|+. ..|..++....+.|.
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCC
Confidence 0222 256677777776664
No 160
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.048 Score=42.91 Aligned_cols=137 Identities=10% Similarity=0.050 Sum_probs=91.2
Q ss_pred hccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHH
Q 036589 18 LQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97 (176)
Q Consensus 18 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~ 97 (176)
..++++.|..+|++. ... -..+...|-.-+.+=.+.+.+..|..+++..... -...|.. |---+.+=
T Consensus 85 sq~e~~RARSv~ERA-Ldv----------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdql-WyKY~ymE 151 (677)
T KOG1915|consen 85 SQKEIQRARSVFERA-LDV----------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQL-WYKYIYME 151 (677)
T ss_pred hHHHHHHHHHHHHHH-Hhc----------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHH-HHHHHHHH
Confidence 356788899999997 332 1235566766777777888888888888887765 2333332 33344444
Q ss_pred HhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccc
Q 036589 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQV 172 (176)
Q Consensus 98 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g 172 (176)
-..|++..|.++|+.-.+- .|+...|++.|+.=.+-+.++.|..++.+.+-. ||++.+|--...---+.|
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHhcC
Confidence 5567888888888876643 588888888888888888888888888877643 366666655444333333
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.06 Score=39.67 Aligned_cols=107 Identities=10% Similarity=0.015 Sum_probs=83.0
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccC-HHHHHHHHHhcccCCCCccHhHH
Q 036589 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL-LEHALQVFDEMPSFNVQRTVKSL 125 (176)
Q Consensus 47 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~ 125 (176)
.+-|...|.-|...|...|+++.|..-|....+-.|-.|+...-..=+-.+..-+. -.++.++|+++.... .-|+.+-
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 34488899999999999999999999999998876666665544433333444333 578999999998654 3466777
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 126 NTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 126 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
..|-..+...|++.+|...++.|.+...+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 77778999999999999999999886543
No 162
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=96.75 E-value=0.14 Score=37.84 Aligned_cols=142 Identities=8% Similarity=0.151 Sum_probs=104.4
Q ss_pred ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh-c-CChHHHHHHHHHHhhcCCCCCchHHHHHHHHH
Q 036589 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR-A-KMFDEMQQILHQLKHDTRVIPEEIIFCNVISF 96 (176)
Q Consensus 19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~-~-g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~ 96 (176)
...+.+|+++|+....+ ..+-.|..+-..+++.... . .....-.++.+.+....+-.++..+...+|+.
T Consensus 141 N~~Vv~aL~L~~~~~~~---------~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~ 211 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPD---------ESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEI 211 (292)
T ss_pred hHHHHHHHHHhhccCcc---------cceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHH
Confidence 44566888888855221 2355678888888888876 2 24555566777777666778888899999999
Q ss_pred HHhccCHHHHHHHHHhcccC-CCCccHhHHHHHHHHHHhcCcHHHHHHHHHH-----HHhccccccchHHHHHHHHHhhc
Q 036589 97 YGRARLLEHALQVFDEMPSF-NVQRTVKSLNTLLNALLTCGKLDRMKELFIS-----FNLKAIAVLDGLCSNLKIIMNDS 170 (176)
Q Consensus 97 ~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~-----m~~~~~~~p~~~t~~~li~~~~~ 170 (176)
+++.++|.+-.++++.-... +..-|...|..+|+.....|+..-...+.++ ++..++. .+...-..+-..+.+
T Consensus 212 L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~-v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 212 LAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVD-VTDELRSQLSELFKK 290 (292)
T ss_pred HHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCc-CCHHHHHHHHHHHHh
Confidence 99999999999999987744 6677999999999999999999988888766 2345555 555555555444433
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.73 E-value=0.02 Score=38.34 Aligned_cols=92 Identities=13% Similarity=-0.035 Sum_probs=74.4
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF 90 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 90 (176)
.+-..+...|++++|..+|+-+ -.- -+-+..-|-.|.-++-..|++++|...|.....- . .-|...+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L-~~~----------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~ 106 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLL-TIY----------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAP 106 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH-HHh----------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHH
Confidence 3455677899999999999987 221 1236667888888899999999999999999877 4 3456777
Q ss_pred HHHHHHHHhccCHHHHHHHHHhccc
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPS 115 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~ 115 (176)
-.+-.++.+.|+.+.|.+.|+....
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7799999999999999999998774
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.70 E-value=0.11 Score=36.03 Aligned_cols=130 Identities=14% Similarity=0.050 Sum_probs=96.2
Q ss_pred CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--CC
Q 036589 7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR--VI 84 (176)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g--~~ 84 (176)
----.|-.++.+.|++.+|...|++. .. ..+..|....-.+.++....+++-.|...++++-+... -.
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qa-ls---------G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQA-LS---------GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHH-hc---------cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence 33456788999999999999999998 33 25667888888888999999999999999999887621 23
Q ss_pred CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHH----HHHHHHHh
Q 036589 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK----ELFISFNL 150 (176)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~----~l~~~m~~ 150 (176)
|| +.-.+-+.|...|...+|+..|+...+. -|+...--..-..+.+.|+.+++. ++++....
T Consensus 160 pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 160 PD--GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred CC--chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 33 3345678888899999999999988864 366555445555667777655544 55555543
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.67 E-value=0.035 Score=41.06 Aligned_cols=118 Identities=8% Similarity=0.056 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHhhcC---C-CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-----Ccc
Q 036589 52 LHYDLIITKLGRA-KMFDEMQQILHQLKHDT---R-VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-----QRT 121 (176)
Q Consensus 52 ~~y~~li~~~~~~-g~~~~a~~~~~~m~~~~---g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~ 121 (176)
..+..+...|-.. |+++.|.+.|++..... + ..--..++..+...+.+.|++++|+++|++...... +.+
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 3566666777777 88999999888876541 2 111234556788899999999999999998764332 222
Q ss_pred Hh-HHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccc-cchHHHHHHHHHhh
Q 036589 122 VK-SLNTLLNALLTCGKLDRMKELFISFNLKA--IAV-LDGLCSNLKIIMND 169 (176)
Q Consensus 122 ~~-~~~~ll~~~~~~g~~~~a~~l~~~m~~~~--~~~-p~~~t~~~li~~~~ 169 (176)
.. .|-..+-++...|+...|.+.|++..+.. +.. .....-..||.+|-
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 22 22233345666799999999999987543 320 22344455555553
No 166
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.65 E-value=0.018 Score=32.95 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=49.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589 58 ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN 117 (176)
Q Consensus 58 i~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 117 (176)
-..|.+.++++.|.++++.+... . +.+...+...-.++.+.|++++|.+.|+...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~-~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL-D-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-C-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 35678999999999999999987 2 3466777788999999999999999999998654
No 167
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.63 E-value=0.014 Score=47.66 Aligned_cols=139 Identities=17% Similarity=0.063 Sum_probs=103.5
Q ss_pred HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHH
Q 036589 10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEII 89 (176)
Q Consensus 10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~ 89 (176)
..+...+.+.|-...|+.+|++. ..|.-+|.+|+..|+-.+|..+..+-.++ +||...
T Consensus 402 ~~laell~slGitksAl~I~Erl-------------------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~l 459 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL-------------------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRL 459 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH-------------------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchh
Confidence 34677888899999999999887 35677999999999999999988888764 578888
Q ss_pred HHHHHHHHHhccCHHHHHHHHHhcc----------------------------cCCCCccHhHHHHHHHHHHhcCcHHHH
Q 036589 90 FCNVISFYGRARLLEHALQVFDEMP----------------------------SFNVQRTVKSLNTLLNALLTCGKLDRM 141 (176)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~----------------------------~~~~~p~~~~~~~ll~~~~~~g~~~~a 141 (176)
|..+.+....-.-+++|+++++..- +.. +.-..+|-.+-.+..+.+++..|
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 8877666555555566665555322 111 11235566666677788899999
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589 142 KELFISFNLKAIAVLDGLCSNLKIIMNDSQVR 173 (176)
Q Consensus 142 ~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 173 (176)
.+.|..-....+. +...||.+-.+|.+.++
T Consensus 539 v~aF~rcvtL~Pd--~~eaWnNls~ayi~~~~ 568 (777)
T KOG1128|consen 539 VKAFHRCVTLEPD--NAEAWNNLSTAYIRLKK 568 (777)
T ss_pred HHHHHHHhhcCCC--chhhhhhhhHHHHHHhh
Confidence 9999998876654 78899999998887664
No 168
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.085 Score=45.28 Aligned_cols=142 Identities=12% Similarity=0.064 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589 6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP 85 (176)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~ 85 (176)
+..|+.+..+=.+.|.+.+|++-|-+.. |+..|..+++...+.|.+++..+.+...++. .-+|
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad----------------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~ 1166 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD----------------DPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREP 1166 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC----------------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCc
Confidence 4578899999999999999998877662 7889999999999999999999999888877 6666
Q ss_pred chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH----------------
Q 036589 86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN---------------- 149 (176)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~---------------- 149 (176)
... +.||-+|++.+++.+.++++. -||....-.+-+-|...+.++.|.-+|....
T Consensus 1167 ~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1167 YID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred cch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 554 578999999999887766542 2444444444444444444444443332211
Q ss_pred ----hccccccchHHHHHHHHHhhccccC
Q 036589 150 ----LKAIAVLDGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 150 ----~~~~~~p~~~t~~~li~~~~~~g~~ 174 (176)
...-. .++.||--.=.+|...+.+
T Consensus 1238 ~AVD~aRKA-ns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1238 GAVDAARKA-NSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HHHHHhhhc-cchhHHHHHHHHHhchhhh
Confidence 00111 4566777777777665543
No 169
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.60 E-value=0.016 Score=47.95 Aligned_cols=107 Identities=12% Similarity=0.093 Sum_probs=78.4
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI 88 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~ 88 (176)
|--+.+.|...|+++.|.++|.+.. .++..|..|.++|++++|.++-.+.. |...+..
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~-------------------~~~dai~my~k~~kw~da~kla~e~~---~~e~t~~ 825 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD-------------------LFKDAIDMYGKAGKWEDAFKLAEECH---GPEATIS 825 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc-------------------hhHHHHHHHhccccHHHHHHHHHHhc---CchhHHH
Confidence 4556788999999999999998871 24457888999999999999877665 5667778
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHH
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~ 146 (176)
.|-+-..-+-+.|++.+|+++|-... .|+. -|.+|-++|..+..+++..
T Consensus 826 ~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 826 LYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHH
Confidence 88887777888888888888776655 2442 2445555555555554443
No 170
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.072 Score=38.88 Aligned_cols=131 Identities=11% Similarity=-0.008 Sum_probs=94.4
Q ss_pred HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC 91 (176)
Q Consensus 12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~ 91 (176)
++..+.-.+.+.-.+.++++. .+. ..+.++..-..+.+.-.+.|+.+.|...|++..+. .-+.+..+++
T Consensus 183 ~~~~llG~kEy~iS~d~~~~v-i~~---------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~ 251 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSV-IKY---------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGK 251 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHH-HHh---------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-Hhhhhccchh
Confidence 344444456666677777776 332 22346677777888888999999999999988887 5567777776
Q ss_pred HHHH-----HHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 92 NVIS-----FYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 92 ~li~-----~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
.++. .|.-..++..|...|++..... ..|+...|.-.-++.-.|+...|.+.+..|++..+.
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 6543 3444667888999998888654 446777777666677789999999999999886554
No 171
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.52 E-value=0.038 Score=44.07 Aligned_cols=141 Identities=9% Similarity=0.009 Sum_probs=101.4
Q ss_pred hhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcc
Q 036589 22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRAR 101 (176)
Q Consensus 22 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g 101 (176)
+....++|-++... .+.++|+.++..|.-.|--.|+|++|...|+...... +-|..+||-|-..++...
T Consensus 410 l~~i~~~fLeaa~~---------~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~ 478 (579)
T KOG1125|consen 410 LAHIQELFLEAARQ---------LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGN 478 (579)
T ss_pred HHHHHHHHHHHHHh---------CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCc
Confidence 33455556555222 3435678888888888889999999999999999651 336678899988888889
Q ss_pred CHHHHHHHHHhcccCCCCcc-HhHHHHHHHHHHhcCcHHHHHHHHHHHH---hc-----cccccchHHHHHHHHHhhccc
Q 036589 102 LLEHALQVFDEMPSFNVQRT-VKSLNTLLNALLTCGKLDRMKELFISFN---LK-----AIAVLDGLCSNLKIIMNDSQV 172 (176)
Q Consensus 102 ~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~l~~~m~---~~-----~~~~p~~~t~~~li~~~~~~g 172 (176)
+.++|++.|.+.++.. |+ +.+...|--+|...|.+++|.+.|-+.+ +. +.++++...|.+|=.++.-.+
T Consensus 479 ~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 479 RSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMN 556 (579)
T ss_pred ccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcC
Confidence 9999999999998764 54 3445556667889999999998886643 22 111145568888776666665
Q ss_pred cCC
Q 036589 173 RVT 175 (176)
Q Consensus 173 ~~~ 175 (176)
+.|
T Consensus 557 ~~D 559 (579)
T KOG1125|consen 557 RSD 559 (579)
T ss_pred Cch
Confidence 544
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.51 E-value=0.15 Score=36.92 Aligned_cols=154 Identities=8% Similarity=-0.115 Sum_probs=91.6
Q ss_pred HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC 91 (176)
Q Consensus 12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~ 91 (176)
....+...|++++|.+.|+.+ .... +.-+.-....-.+..++-+.+++++|...+++..+..+-.|+ .-|.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l-~~~y-------P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a 108 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEAL-DNRY-------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYV 108 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HHhC-------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHH
Confidence 345556689999999999998 3331 211111222345678888999999999999999887433333 2333
Q ss_pred HHHHHHHh--cc---------------C---HHHHHHHHHhcccC----CCCccHhH------------HHHHHHHHHhc
Q 036589 92 NVISFYGR--AR---------------L---LEHALQVFDEMPSF----NVQRTVKS------------LNTLLNALLTC 135 (176)
Q Consensus 92 ~li~~~~~--~g---------------~---~~~a~~~~~~m~~~----~~~p~~~~------------~~~ll~~~~~~ 135 (176)
..+.+.+. .+ + ..+|++.|+++++. ...++... --.+..-|.+.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333321 11 1 34566667666632 11111111 11344557888
Q ss_pred CcHHHHHHHHHHHHhccc--cccchHHHHHHHHHhhccccCC
Q 036589 136 GKLDRMKELFISFNLKAI--AVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 136 g~~~~a~~l~~~m~~~~~--~~p~~~t~~~li~~~~~~g~~~ 175 (176)
|.+..|..=|+.+.+.-. + ......-.|+.+|...|..+
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~-~~~eal~~l~~ay~~lg~~~ 229 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQ-ATRDALPLMENAYRQLQLNA 229 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHHcCChH
Confidence 999889988888886432 2 34455567778887777643
No 173
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.50 E-value=0.12 Score=33.86 Aligned_cols=132 Identities=11% Similarity=0.094 Sum_probs=92.6
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI 84 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~ 84 (176)
++.....++..+...+.+.....+++.+... + ..+...++.++..|++... .+....++. .
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~----------~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~----- 66 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKL----------N-SENPALQTKLIELYAKYDP-QKEIERLDN--K----- 66 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHcc----------C-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--c-----
Confidence 4567788999999999999999999998322 1 2477789999999998753 344444442 1
Q ss_pred CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc-CcHHHHHHHHHHHHhccccccchHHHHH
Q 036589 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC-GKLDRMKELFISFNLKAIAVLDGLCSNL 163 (176)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~l~~~m~~~~~~~p~~~t~~~ 163 (176)
.+......+++.|.+.+.++++..++..+.. |...+..+... ++++.|.+.+.+ . -+...|..
T Consensus 67 ~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~--~-----~~~~lw~~ 130 (140)
T smart00299 67 SNHYDIEKVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK--Q-----NNPELWAE 130 (140)
T ss_pred cccCCHHHHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh--C-----CCHHHHHH
Confidence 2334445588888889999999999988763 23333344444 888889888876 1 35568888
Q ss_pred HHHHhhcc
Q 036589 164 KIIMNDSQ 171 (176)
Q Consensus 164 li~~~~~~ 171 (176)
++..+...
T Consensus 131 ~~~~~l~~ 138 (140)
T smart00299 131 VLKALLDK 138 (140)
T ss_pred HHHHHHcc
Confidence 88777643
No 174
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=0.29 Score=38.76 Aligned_cols=133 Identities=8% Similarity=-0.007 Sum_probs=103.6
Q ss_pred CCCHHHHHHH----HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589 6 PTSPFRLASL----LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81 (176)
Q Consensus 6 ~~~~~~l~~~----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~ 81 (176)
.+||..+--. -.|+.+++.|.+++-.. -|..|....+-.-|..=.+.+.++.+..+|+...+.
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~A------------IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~- 466 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNA------------IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF- 466 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHH------------hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 3455554333 34678899999988877 466788888888888888999999999999999977
Q ss_pred CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC-CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN-VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152 (176)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 152 (176)
+ +-+..+|.-....=-..|+.+.|..+|+-..+.. ..--...|-+.|+-=...|.+++|..|++.+.+..
T Consensus 467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 2 3467788777777778899999999999887532 22245667788887788999999999999998753
No 175
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.024 Score=42.94 Aligned_cols=93 Identities=10% Similarity=0.106 Sum_probs=68.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH-HHHHHHHhccCHHHHHHHHHhcccCCCCccHhH-HHHHHHHHHh
Q 036589 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC-NVISFYGRARLLEHALQVFDEMPSFNVQRTVKS-LNTLLNALLT 134 (176)
Q Consensus 57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~ 134 (176)
+.++.+..|.+.+|+++|-.+... .+ -|..+|. .|.++|.+++.++-|+.++-++... .+..+ .-.+.+-|-+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHH
Confidence 456677789999999999888744 23 5667774 5678999999999999999888732 12222 3344577888
Q ss_pred cCcHHHHHHHHHHHHhcccc
Q 036589 135 CGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 135 ~g~~~~a~~l~~~m~~~~~~ 154 (176)
.+.+--|.+-|+.+....+.
T Consensus 474 ~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHhhhHHHccCCC
Confidence 99999999999888765443
No 176
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.049 Score=40.64 Aligned_cols=105 Identities=10% Similarity=0.146 Sum_probs=79.1
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH
Q 036589 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR--VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122 (176)
Q Consensus 45 ~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 122 (176)
.|......+...++..-....+++.+...+-+++.+.. ..|+...+. +++.+ ..-+.++++.++..=.+.|+-||-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHHHH-HccChHHHHHHHhCcchhccccch
Confidence 34455666666677766778889999998888886621 344443333 23332 334788999999999999999999
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589 123 KSLNTLLNALLTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 123 ~~~~~ll~~~~~~g~~~~a~~l~~~m~~~ 151 (176)
.+++.+|+.+.+.+++..|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999998877643
No 177
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.37 E-value=0.11 Score=44.47 Aligned_cols=145 Identities=10% Similarity=0.008 Sum_probs=78.0
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
....+..+|-+.|+.++|.++++++ -.. -+-++...|.+...|+.. ++++|.+++.+..... .+.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~-L~~----------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~---i~~ 182 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERL-VKA----------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF---IKK 182 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHH-Hhc----------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH---Hhh
Confidence 3444556666667777777777776 221 133666667777777766 6777766666655440 111
Q ss_pred HHHHHHHHHHH-----hccCHHHHHHHHHhcc-cCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHH
Q 036589 88 IIFCNVISFYG-----RARLLEHALQVFDEMP-SFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCS 161 (176)
Q Consensus 88 ~~~~~li~~~~-----~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~ 161 (176)
.-|+.+...+. .-.+.+.-.++.+.+. +.|...-..++-.+-..|...++++++..+|+...+.... |....
T Consensus 183 kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~--n~~a~ 260 (906)
T PRK14720 183 KQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK--NNKAR 260 (906)
T ss_pred hcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc--chhhH
Confidence 11222211111 1112222233333333 1233334455556667777777788888888887776554 66666
Q ss_pred HHHHHHhh
Q 036589 162 NLKIIMND 169 (176)
Q Consensus 162 ~~li~~~~ 169 (176)
.-++.+|.
T Consensus 261 ~~l~~~y~ 268 (906)
T PRK14720 261 EELIRFYK 268 (906)
T ss_pred HHHHHHHH
Confidence 66666665
No 178
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.1 Score=40.50 Aligned_cols=57 Identities=14% Similarity=-0.060 Sum_probs=34.8
Q ss_pred HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036589 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 79 (176)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 79 (176)
.+.+..++...|.+.|-.++.. .-++-++.....+..++...|+.++|...|++...
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~---------~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~ 260 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDN---------TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC 260 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhh---------ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh
Confidence 3444456666666665555222 34455666677777777777777777777776653
No 179
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=0.08 Score=38.53 Aligned_cols=101 Identities=12% Similarity=0.030 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC---CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC-CCCc-cHhHH
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTR---VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF-NVQR-TVKSL 125 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p-~~~~~ 125 (176)
...|+.-+.. .+.|++..|..-|....+.+. +.|+. +-.|.+++...|+++.|..+|..+.+. +-.| -+...
T Consensus 142 ~~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 4466655554 455668888887777776631 23333 233677788888888888888777632 2122 22445
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 126 NTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 126 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
--|-.+..+.|+.++|...|++..+.-+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 55666677788888888888887765443
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.28 E-value=0.079 Score=39.96 Aligned_cols=84 Identities=11% Similarity=0.156 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH
Q 036589 53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132 (176)
Q Consensus 53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 132 (176)
+.+..|.-+...|+...|.++-++.+ .|+..-|...+.+|+..++|++-.++-.+ +-++.-|-.++..|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 45555777777888888866655443 37888899999999999999988876543 23457799999999
Q ss_pred HhcCcHHHHHHHHHH
Q 036589 133 LTCGKLDRMKELFIS 147 (176)
Q Consensus 133 ~~~g~~~~a~~l~~~ 147 (176)
.+.|+..+|..++..
T Consensus 248 ~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK 262 (319)
T ss_pred HHCCCHHHHHHHHHh
Confidence 999999999888877
No 181
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.27 E-value=0.29 Score=40.27 Aligned_cols=153 Identities=12% Similarity=0.036 Sum_probs=112.4
Q ss_pred CCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589 2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81 (176)
Q Consensus 2 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~ 81 (176)
..|+...|..-+....-.++.++|++++++.. +.++.-...|-.+.+.+-..++++.|..-|..=.+.
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l-----------k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~- 714 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEAL-----------KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK- 714 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH-----------HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-
Confidence 35777788888888888999999999998872 234444456777778888889999998887765543
Q ss_pred CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHH
Q 036589 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCS 161 (176)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~ 161 (176)
+.-....|-.|.+.=-+.|.+-.|..+|+.-.-.+ +-|...|-..|..=.+.|+.+.|..+..+..+.... +..-|
T Consensus 715 -cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~--sg~LW 790 (913)
T KOG0495|consen 715 -CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPS--SGLLW 790 (913)
T ss_pred -CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cchhH
Confidence 23334456666666677889999999999877444 447888999999999999999999998887765443 55555
Q ss_pred HHHHHHhhc
Q 036589 162 NLKIIMNDS 170 (176)
Q Consensus 162 ~~li~~~~~ 170 (176)
..-|....+
T Consensus 791 aEaI~le~~ 799 (913)
T KOG0495|consen 791 AEAIWLEPR 799 (913)
T ss_pred HHHHHhccC
Confidence 555544433
No 182
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.18 E-value=0.15 Score=42.25 Aligned_cols=130 Identities=11% Similarity=-0.034 Sum_probs=101.3
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-h
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE-E 87 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~-~ 87 (176)
|......+.+.++.++|...+.+. .. ..+-....|......+-..|.+++|.+.|.....- .|+ +
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea-~~----------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l---dP~hv 718 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEA-SK----------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL---DPDHV 718 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHH-Hh----------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc---CCCCc
Confidence 445567788888889998777776 22 23446667777777888889999999988887744 444 4
Q ss_pred HHHHHHHHHHHhccCHHHHHH--HHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589 88 IIFCNVISFYGRARLLEHALQ--VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~ 153 (176)
.+..++..++.+.|+..-|.. ++..+.+.+ +.+...|-.+-..+-+.|+.++|.+.|....+...
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 567889999999998777777 999998776 55788899999999999999999999998776443
No 183
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.17 Score=40.80 Aligned_cols=124 Identities=9% Similarity=0.031 Sum_probs=83.2
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN 92 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~ 92 (176)
++-+.+.+++++|.+.-+.+ .. ..+-+...+..-+-++.+.+.|++|..+.+.-.. ...+.+-+--
T Consensus 19 ln~~~~~~e~e~a~k~~~Ki-l~----------~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fE 84 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKI-LS----------IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFE 84 (652)
T ss_pred HHHhccchHHHHHHHHHHHH-Hh----------cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHH
Confidence 45566788999999998888 22 2344666777778888899999999854433221 1222222211
Q ss_pred HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
-..+..+.+..++|+..++...+ -+..+...-...+-+.|++++|.++|+.+.+.+.+
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 23344567889999999984442 23335555567778999999999999999876654
No 184
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.088 Score=39.17 Aligned_cols=131 Identities=14% Similarity=0.044 Sum_probs=82.3
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
.+.+++..+.+..++.+|++++..- .++. +.+....+.+..+|-...++..|-..|+++... .|..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~-~Er~----------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~ 77 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSE-LERS----------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPEL 77 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHH-HhcC----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHH
Confidence 4788888899999999999998876 3331 225667777777777777777777766666543 1111
Q ss_pred HH---------HHH------------------------------------------HH----------------HHHHhc
Q 036589 88 II---------FCN------------------------------------------VI----------------SFYGRA 100 (176)
Q Consensus 88 ~~---------~~~------------------------------------------li----------------~~~~~~ 100 (176)
.- |++ |+ -...+.
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc
Confidence 00 000 00 111345
Q ss_pred cCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153 (176)
Q Consensus 101 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~ 153 (176)
|+++.|.+-|+...+.+---....||.-+..| +.|+++.|+++..+.++.|+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGI 209 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhh
Confidence 67777777777766533223345677766655 44777888888877776665
No 185
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.17 Score=43.65 Aligned_cols=154 Identities=11% Similarity=0.111 Sum_probs=100.3
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHH---------------------------
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLI--------------------------- 57 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l--------------------------- 57 (176)
+|...+..+.++...+-+.+-+++++.+..+. ..+.-+...-|.+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~--------S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDN--------SVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC--------cccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhH
Confidence 45556677888888888888888888764332 1222222222222
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcC--------------------CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589 58 ITKLGRAKMFDEMQQILHQLKHDT--------------------RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN 117 (176)
Q Consensus 58 i~~~~~~g~~~~a~~~~~~m~~~~--------------------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 117 (176)
...+..++-+++|.++|+..--.. .-.-....|+.+..+-.+.|...+|++-|-+..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikad--- 1131 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKAD--- 1131 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcC---
Confidence 223334566777777777643320 000122567777777777788888877765544
Q ss_pred CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 118 VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 118 ~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
|+..|.-+++...+.|++++-.+.+.-.++..-. |... +.||-+|++.+|+.
T Consensus 1132 ---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id--~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1132 ---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYID--SELIFAYAKTNRLT 1183 (1666)
T ss_pred ---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccch--HHHHHHHHHhchHH
Confidence 7778999999999999999999888766655444 5544 57889999988864
No 186
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.06 E-value=0.59 Score=37.59 Aligned_cols=132 Identities=11% Similarity=0.060 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589 7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE 86 (176)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~ 86 (176)
.+|-..|+.-.|..-+..|..+|.+. .+. .-....+++++++|..+|. ++...|.++|+-=.+..| -+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~ka-R~~--------~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~ 434 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKA-RED--------KRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DS 434 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHH-hhc--------cCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CC
Confidence 46778899999999999999999999 442 2223589999999998875 678999999998666532 22
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc--HhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT--VKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
..--..-+..+...++=..+..+|+.....+..|+ ...|..+|.-=..-|++..+.++-+++..
T Consensus 435 p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 435 PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 23335678888889999999999999997765554 47799999999999999999999887754
No 187
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.02 E-value=0.11 Score=38.27 Aligned_cols=77 Identities=8% Similarity=0.050 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh-----ccccccchHHHHH
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL-----KAIAVLDGLCSNL 163 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~p~~~t~~~ 163 (176)
++..++..+...|+++.+.+.++++.... +-+...|-.+|.+|.+.|+...|++.|+.+.+ .|+. |...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~-P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID-PAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC-ccHHHHHH
Confidence 33446788888999999999999988554 55888999999999999999999999998864 6999 99988887
Q ss_pred HHHH
Q 036589 164 KIIM 167 (176)
Q Consensus 164 li~~ 167 (176)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 7766
No 188
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.01 E-value=0.25 Score=34.64 Aligned_cols=150 Identities=9% Similarity=-0.082 Sum_probs=90.5
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN 92 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~ 92 (176)
-..+...|++.+|.+.|+.+ .... ++-+-.....-.++.++-+.|+++.|...+++..+..+-.|. .-+..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l-~~~~-------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~ 82 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKL-IDRY-------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYAL 82 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHH-HHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH-HHHC-------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHH
Confidence 45567799999999999998 3321 222334445566889999999999999999998887433332 22222
Q ss_pred HHHHHH-------------hccCHHHHHHHHHhcccCCCCccHhH------------------HHHHHHHHHhcCcHHHH
Q 036589 93 VISFYG-------------RARLLEHALQVFDEMPSFNVQRTVKS------------------LNTLLNALLTCGKLDRM 141 (176)
Q Consensus 93 li~~~~-------------~~g~~~~a~~~~~~m~~~~~~p~~~~------------------~~~ll~~~~~~g~~~~a 141 (176)
.+.+.+ ..+...+|...|+.+.+.- |++.- --.+..-|.+.|.+..|
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 222222 1223467788888776421 33211 11345678899999999
Q ss_pred HHHHHHHHhccccc-cchHHHHHHHHHhhcccc
Q 036589 142 KELFISFNLKAIAV-LDGLCSNLKIIMNDSQVR 173 (176)
Q Consensus 142 ~~l~~~m~~~~~~~-p~~~t~~~li~~~~~~g~ 173 (176)
..-++.+.+.-..- ......-.|+.+|.+.|.
T Consensus 161 ~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 161 IIRFQYVIENYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence 99999988753320 123345667777776664
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.15 Score=37.56 Aligned_cols=113 Identities=10% Similarity=-0.083 Sum_probs=81.6
Q ss_pred CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHH---HhcCChHHHHHHHHHHhh
Q 036589 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKL---GRAKMFDEMQQILHQLKH 79 (176)
Q Consensus 3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~---~~~g~~~~a~~~~~~m~~ 79 (176)
.-|...|-.|-.+|.+.|+.+.|..-|....+- .|- ++..+..+..++ .......++..+|+++.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---------~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL---------AGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh---------CCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 446778999999999999999999999997222 233 444444444433 344456889999999997
Q ss_pred cCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130 (176)
Q Consensus 80 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 130 (176)
.. .-|.....-|-..+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 222 ~D--~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 222 LD--PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred cC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 62 3455566667788999999999999999999764 44444555543
No 190
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.99 E-value=0.26 Score=39.01 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=64.9
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN 92 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~ 92 (176)
.+.-.+.|+++.|.++-++. .+...|..|.....+.|+++-|++.|++...- ..
T Consensus 325 FeLAl~lg~L~~A~~~a~~~----------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~----------~~ 378 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKEL----------------DDPEKWKQLGDEALRQGNIELAEECYQKAKDF----------SG 378 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCC----------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------HH
T ss_pred hHHHHhcCCHHHHHHHHHhc----------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------cc
Confidence 34444555555555555444 15667777777777778888877777776643 55
Q ss_pred HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m 148 (176)
|+-.|.-.|+.+.-.++-+.....| -+|.-..++...|+++++.+++.+-
T Consensus 379 L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 379 LLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6666777777766666665555333 2666667777778888888777653
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=95.92 E-value=0.3 Score=33.04 Aligned_cols=92 Identities=9% Similarity=-0.001 Sum_probs=70.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC
Q 036589 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136 (176)
Q Consensus 57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 136 (176)
...-+-..|++++|+.+|.-+....... ..-|..|-.++...+++++|+..|......+ .-|...+--.-.+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 3444457899999999999998762223 3345678888888999999999998765444 346666777788999999
Q ss_pred cHHHHHHHHHHHHhc
Q 036589 137 KLDRMKELFISFNLK 151 (176)
Q Consensus 137 ~~~~a~~l~~~m~~~ 151 (176)
+.+.|...|....+.
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999888764
No 192
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.83 E-value=0.64 Score=37.12 Aligned_cols=147 Identities=15% Similarity=0.169 Sum_probs=102.4
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcH-----HHHHHHHHHHHh----cCChHHHHHHHHHHh
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNL-----LHYDLIITKLGR----AKMFDEMQQILHQLK 78 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~y~~li~~~~~----~g~~~~a~~~~~~m~ 78 (176)
....++..++=.||-+.+++++.+. .+. .++.-.. -.|+.++..++. ....+.|.++++.+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~-~~~--------~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~ 260 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEA-SKS--------ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEML 260 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHH-hcc--------CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHH
Confidence 3556788888899999999999887 333 3444322 246666655554 346788999999999
Q ss_pred hcCCCCCchHHHHHH-HHHHHhccCHHHHHHHHHhcccCC---CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 79 HDTRVIPEEIIFCNV-ISFYGRARLLEHALQVFDEMPSFN---VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 79 ~~~g~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
+.+ |+...|... -+.+...|++++|++.|+...... -+....++.-+.-.+.-.+++++|.+.|..+.+..-
T Consensus 261 ~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~- 336 (468)
T PF10300_consen 261 KRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK- 336 (468)
T ss_pred HhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-
Confidence 873 777777543 356677899999999999755311 123455666777778889999999999999987422
Q ss_pred ccchHHHHHHHHHh
Q 036589 155 VLDGLCSNLKIIMN 168 (176)
Q Consensus 155 ~p~~~t~~~li~~~ 168 (176)
.+..+|.-+.-+|
T Consensus 337 -WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 337 -WSKAFYAYLAAAC 349 (468)
T ss_pred -cHHHHHHHHHHHH
Confidence 3455555544443
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.83 E-value=0.048 Score=28.04 Aligned_cols=38 Identities=16% Similarity=-0.001 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHH
Q 036589 124 SLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163 (176)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~ 163 (176)
.+..+-..|...|++++|.++|++..+.... |...|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~--~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD--DPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--CHHHHHH
Confidence 3555666666777777777777776665544 4444433
No 194
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.73 E-value=0.18 Score=37.21 Aligned_cols=80 Identities=10% Similarity=0.050 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc-----cCCCCccHhHHHH
Q 036589 53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP-----SFNVQRTVKSLNT 127 (176)
Q Consensus 53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~~ 127 (176)
++..++..+...|+++.+...++++... -.-+...|..+|.+|.+.|+...|+..|+.+. +.|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3455566666779999999999999977 45688999999999999999999999998775 4889999998888
Q ss_pred HHHHHHh
Q 036589 128 LLNALLT 134 (176)
Q Consensus 128 ll~~~~~ 134 (176)
+.....+
T Consensus 233 y~~~~~~ 239 (280)
T COG3629 233 YEEILRQ 239 (280)
T ss_pred HHHHhcc
Confidence 8877443
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.71 E-value=0.7 Score=37.37 Aligned_cols=123 Identities=10% Similarity=-0.028 Sum_probs=84.3
Q ss_pred CCCcHHHHHHHHHHHHhcC-----ChHHHHHHHHHHhhcCCCCCch-HHHHHHHHHHHhc--------cCHHHHHHHHHh
Q 036589 47 FRYNLLHYDLIITKLGRAK-----MFDEMQQILHQLKHDTRVIPEE-IIFCNVISFYGRA--------RLLEHALQVFDE 112 (176)
Q Consensus 47 ~~~~~~~y~~li~~~~~~g-----~~~~a~~~~~~m~~~~g~~~~~-~~~~~li~~~~~~--------g~~~~a~~~~~~ 112 (176)
.+.+...|...+.+..... ....|..+|++..+. .|+- ..|..+..++... +++..+.+..+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3458899999998876533 367899999999976 4543 3334333333221 223455555554
Q ss_pred cccC-CCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 113 MPSF-NVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 113 m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
.... ....+...|.++--.....|++++|.+.|++..+.. |+...|..+-..|...|+.+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNR 470 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHH
Confidence 3332 233456778877777777899999999999988764 57789999999999998864
No 196
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.69 E-value=0.028 Score=41.54 Aligned_cols=137 Identities=11% Similarity=0.056 Sum_probs=84.9
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---C-CC
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---R-VI 84 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g-~~ 84 (176)
|..--..|...+++++|.+.|.....-.. .......-...|.....+|.+. ++++|...+++..... | +.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~-----~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~ 111 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYE-----KLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS 111 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHH-----HTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence 44455667777888888777776511000 0011112233566666666555 8888888888766531 2 22
Q ss_pred CchHHHHHHHHHHHhc-cCHHHHHHHHHhccc----CCCCc--cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589 85 PEEIIFCNVISFYGRA-RLLEHALQVFDEMPS----FNVQR--TVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152 (176)
Q Consensus 85 ~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~~~~p--~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 152 (176)
--...+..+-..|... |++++|++.|++..+ .+ .+ -..++.-+...+.+.|++++|.++|++.....
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 2234666778888888 899999999987653 33 22 24567788889999999999999999987643
No 197
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.59 E-value=0.27 Score=33.79 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch--HHHHHHHHHHHhccCHHHHHHHHHhccc---CCCCccHhHH
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE--IIFCNVISFYGRARLLEHALQVFDEMPS---FNVQRTVKSL 125 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~ 125 (176)
...+..+...|++.|+.+.|.+.|.++... ...+.. ..+-.+|+.....+++..+.....+... .|-.++...-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 346777888888888888888888887766 333333 3445677777778887777777665543 2211222111
Q ss_pred HHHHHHH--HhcCcHHHHHHHHHHHH
Q 036589 126 NTLLNAL--LTCGKLDRMKELFISFN 149 (176)
Q Consensus 126 ~~ll~~~--~~~g~~~~a~~l~~~m~ 149 (176)
-....++ ...+++.+|.++|-+..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 1112222 23577888887776653
No 198
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.59 E-value=0.068 Score=42.69 Aligned_cols=88 Identities=8% Similarity=0.057 Sum_probs=70.3
Q ss_pred ChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHH
Q 036589 66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145 (176)
Q Consensus 66 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~ 145 (176)
.+....++|-++....+..+|.-.+..|--.|--.|++++|+..|+..++.. +-|...||-|--.++...+.++|+.-|
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 3455666777766664656777777888888888999999999999988653 347788999999999999999999999
Q ss_pred HHHHhcccc
Q 036589 146 ISFNLKAIA 154 (176)
Q Consensus 146 ~~m~~~~~~ 154 (176)
.+.++.-+.
T Consensus 488 ~rALqLqP~ 496 (579)
T KOG1125|consen 488 NRALQLQPG 496 (579)
T ss_pred HHHHhcCCC
Confidence 998876443
No 199
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=1 Score=36.63 Aligned_cols=152 Identities=13% Similarity=0.075 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHhcc-ChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH--------
Q 036589 5 KPTSPFRLASLLHLQK-HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILH-------- 75 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~-------- 75 (176)
..+.-+.+..+..... .+.+|.+++... .++ .+.. ...+-=.+++.....|+++.|.+++.
T Consensus 339 ~~~~~~ll~~~t~~~~~~~~ka~e~L~~~-~~~--------~p~~-s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 339 ESLFPILLQEATKVREKKHKKAIELLLQF-ADG--------HPEK-SKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hcc--------CCch-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 3333344444443333 477888888877 332 1111 24455556777788999999999999
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC--CCccHhHHHH----HHHHHHhcCcHHHHHHHHHHHH
Q 036589 76 QLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN--VQRTVKSLNT----LLNALLTCGKLDRMKELFISFN 149 (176)
Q Consensus 76 ~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~----ll~~~~~~g~~~~a~~l~~~m~ 149 (176)
.+.+- +..|..+ ..++..+.+.++-+-|.+++++....- -.+.....++ ....=.++|.-++|..+++++.
T Consensus 409 s~~~~-~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 409 SILEA-KHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhhh-ccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 55544 5555544 556777777777666666666544210 0122233333 3334457899999999999999
Q ss_pred hccccccchHHHHHHHHHhhcc
Q 036589 150 LKAIAVLDGLCSNLKIIMNDSQ 171 (176)
Q Consensus 150 ~~~~~~p~~~t~~~li~~~~~~ 171 (176)
+... +|..+-..++.+|++.
T Consensus 486 k~n~--~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 486 KFNP--NDTDLLVQLVTAYARL 505 (652)
T ss_pred HhCC--chHHHHHHHHHHHHhc
Confidence 8766 5999999999999864
No 200
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.59 E-value=0.36 Score=31.56 Aligned_cols=130 Identities=14% Similarity=0.146 Sum_probs=81.6
Q ss_pred HHHHH--HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC---
Q 036589 11 RLASL--LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP--- 85 (176)
Q Consensus 11 ~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~--- 85 (176)
.||++ +.-.|.+++..+++.+..... +..-||.+|--....-+-+-..++++.+-+...+.+
T Consensus 5 kLmeAK~~ildG~V~qGveii~k~v~Ss-------------ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~N 71 (161)
T PF09205_consen 5 KLMEAKERILDGDVKQGVEIIEKTVNSS-------------NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGN 71 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS--------------HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHcCcC-------------CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcc
Confidence 34444 334688888888888873222 566677777666666666666666666655432222
Q ss_pred -------------chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589 86 -------------EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152 (176)
Q Consensus 86 -------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 152 (176)
+...+..-+..+.+.|.-++-.+++.++.. +-.+++...--+-.+|.+.|+..++.+++++.-+.|
T Consensus 72 lKrVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 72 LKRVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp THHHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 122233446666777777777888888764 336888888899999999999999999999999988
Q ss_pred cc
Q 036589 153 IA 154 (176)
Q Consensus 153 ~~ 154 (176)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 86
No 201
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.59 E-value=0.21 Score=36.93 Aligned_cols=102 Identities=11% Similarity=0.024 Sum_probs=78.1
Q ss_pred HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-chHHHHHHH
Q 036589 16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVI 94 (176)
Q Consensus 16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li 94 (176)
+.+.+++.+|+..|.+. .+ -.+-|.+-|..=..+|++.|.++.|.+=.+...+. .| -..+|..|-
T Consensus 91 ~m~~~~Y~eAv~kY~~A-I~----------l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---Dp~yskay~RLG 156 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEA-IE----------LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---DPHYSKAYGRLG 156 (304)
T ss_pred HHHhhhHHHHHHHHHHH-Hh----------cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc---ChHHHHHHHHHH
Confidence 45678999999999997 22 12337777888889999999999998766666643 33 357899999
Q ss_pred HHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH
Q 036589 95 SFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133 (176)
Q Consensus 95 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 133 (176)
.+|...|++++|++.|++.++. .|+-.+|-.=|....
T Consensus 157 ~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALEL--DPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhcc--CCCcHHHHHHHHHHH
Confidence 9999999999999999988754 476666665554443
No 202
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.45 E-value=0.34 Score=38.18 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHhccCHHHHHHHHHh-cccCCCCccHhHHHHH
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-VIPEEIIFCNVISFYGRARLLEHALQVFDE-MPSFNVQRTVKSLNTL 128 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~~~~p~~~~~~~l 128 (176)
..+|...|++..+..-++.|..+|-+.++. | ..+++..+++.|..++ .|+...|..+|+. |... .-++.--+-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHH
Confidence 456788888888888899999999999999 6 7889999999999875 6788899999985 4433 2344455677
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589 129 LNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 129 l~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 174 (176)
+.-+.+.++-+.|..+|+.-++.--.---...|..+|+.-..-|.+
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcch
Confidence 8888899999999999986543211100145677777766555543
No 203
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.45 E-value=0.37 Score=41.42 Aligned_cols=154 Identities=8% Similarity=-0.036 Sum_probs=93.1
Q ss_pred HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---C-CCCchH
Q 036589 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY-NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---R-VIPEEI 88 (176)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g-~~~~~~ 88 (176)
..+...|++++|...+++...... ....+ .....+.+...+...|++++|...+++..... | ......
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELP-------LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCC-------CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 344578999999999888622110 11011 12345666677788999999999988876431 1 111223
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhccc----CCCC--c-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc--ccc-ccch
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPS----FNVQ--R-TVKSLNTLLNALLTCGKLDRMKELFISFNLK--AIA-VLDG 158 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~--p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~--~~~-~p~~ 158 (176)
....+...+...|++++|.+.+++..+ .+.. + ....+..+...+...|++++|.+.+.+.... ... ....
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 455667778889999999998887653 2211 1 2233445556677789999999998887542 111 0123
Q ss_pred HHHHHHHHHhhccccC
Q 036589 159 LCSNLKIIMNDSQVRV 174 (176)
Q Consensus 159 ~t~~~li~~~~~~g~~ 174 (176)
..+..+...+...|+.
T Consensus 613 ~~~~~la~~~~~~G~~ 628 (903)
T PRK04841 613 QCLAMLAKISLARGDL 628 (903)
T ss_pred HHHHHHHHHHHHcCCH
Confidence 3444444555555553
No 204
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.42 E-value=0.36 Score=40.77 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=86.3
Q ss_pred HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH--hcCChHHHHHHHHHHhhcCCCCCchHHHHHH
Q 036589 16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG--RAKMFDEMQQILHQLKHDTRVIPEEIIFCNV 93 (176)
Q Consensus 16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~--~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l 93 (176)
....+++.+|++....+.+.. + -..|..++.++. +.|+.++|..+++..... +.. |..|...+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~---------P----n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~~-D~~tLq~l 83 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH---------P----NALYAKVLKALSLFRLGKGDEALKLLEALYGL-KGT-DDLTLQFL 83 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC---------C----CcHHHHHHHHHHHHHhcCchhHHHHHhhhccC-CCC-chHHHHHH
Confidence 345678888888888863331 2 223555666555 789999999999988877 333 89999999
Q ss_pred HHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHH----HHHHHHH
Q 036589 94 ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR----MKELFIS 147 (176)
Q Consensus 94 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~----a~~l~~~ 147 (176)
-.+|.+.+..++|..+|+...+. -|+..-...+..+|.+.+++.+ |.++++.
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~ 139 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN 139 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988754 3777777788888888888765 4455543
No 205
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.32 E-value=0.55 Score=40.38 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=88.3
Q ss_pred HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCCC--
Q 036589 10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD---TRVI-- 84 (176)
Q Consensus 10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~-- 84 (176)
+.+-..+...|++++|...+++...... ...........+..+...+...|++++|...+++.... .+..
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~-----~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 569 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMAR-----QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL 569 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHh-----hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 4455667789999999998888621100 00011112345566677788899999999988876543 1211
Q ss_pred C-chHHHHHHHHHHHhccCHHHHHHHHHhcccC----CCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 85 P-EEIIFCNVISFYGRARLLEHALQVFDEMPSF----NVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 85 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
+ ....+..+...+...|++++|...+++.... +.......+..+...+...|++++|.+.+.....
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 2334555666777889999999999876532 2111234455566777889999999999888754
No 206
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.26 E-value=0.7 Score=38.03 Aligned_cols=95 Identities=11% Similarity=0.115 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 130 (176)
+..|-.-+..+.+.|++......|+.......+.-....|...+......|-++.++.+++...+ .++..-+-.|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHH
Confidence 34555566777788888889999988887756666677888889999999999999999998883 56677899999
Q ss_pred HHHhcCcHHHHHHHHHHHH
Q 036589 131 ALLTCGKLDRMKELFISFN 149 (176)
Q Consensus 131 ~~~~~g~~~~a~~l~~~m~ 149 (176)
-+++.+++++|.+.+...+
T Consensus 178 ~L~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVL 196 (835)
T ss_pred HHHhccchHHHHHHHHHhc
Confidence 9999999999987766543
No 207
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.12 E-value=0.14 Score=38.21 Aligned_cols=130 Identities=13% Similarity=0.223 Sum_probs=83.6
Q ss_pred hhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh--c----CChHHHHHHHHHHhhcCC--CCCchHHHHHH
Q 036589 22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR--A----KMFDEMQQILHQLKHDTR--VIPEEIIFCNV 93 (176)
Q Consensus 22 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~--~----g~~~~a~~~~~~m~~~~g--~~~~~~~~~~l 93 (176)
+++.+.+++.+ .+ .+++-+.++|-+..-.... . -...+|..+|+.|++.-. ..++..++..+
T Consensus 78 ~~~~~~~y~~L-~~---------~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~l 147 (297)
T PF13170_consen 78 FKEVLDIYEKL-KE---------AGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAAL 147 (297)
T ss_pred HHHHHHHHHHH-HH---------hccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHH
Confidence 33456677777 44 4677677766553333322 2 235778999999999833 35677888877
Q ss_pred HHHHHhccC----HHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCc---HHHHHHHHHHHHhccccccchHHHHHH
Q 036589 94 ISFYGRARL----LEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGK---LDRMKELFISFNLKAIAVLDGLCSNLK 164 (176)
Q Consensus 94 i~~~~~~g~----~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~---~~~a~~l~~~m~~~~~~~p~~~t~~~l 164 (176)
+.. ...+ .+.++.+|+.+.+.|+.. |...+-+-+-+++.... ..++.++++.+.+.|+. +....|..+
T Consensus 148 LA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k-ik~~~yp~l 223 (297)
T PF13170_consen 148 LAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK-IKYMHYPTL 223 (297)
T ss_pred Hhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc-cccccccHH
Confidence 665 3333 467788999998878755 34344444444443322 45788999999999888 776666543
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.11 E-value=0.57 Score=30.95 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHH
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 128 (176)
....|. -.....+.|++++|.+.|+.+..+....+ .....-.|+.+|.+.+++++|...++...+..-..--.-|-..
T Consensus 10 ~~~ly~-~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQ-EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 344454 44455678999999999999998854322 3345556999999999999999999999876533333556666
Q ss_pred HHHHHhc
Q 036589 129 LNALLTC 135 (176)
Q Consensus 129 l~~~~~~ 135 (176)
+.+++.-
T Consensus 89 ~~gL~~~ 95 (142)
T PF13512_consen 89 MRGLSYY 95 (142)
T ss_pred HHHHHHH
Confidence 6665543
No 209
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.04 E-value=0.62 Score=36.69 Aligned_cols=145 Identities=12% Similarity=0.114 Sum_probs=96.2
Q ss_pred HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHH
Q 036589 16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYN-LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVI 94 (176)
Q Consensus 16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li 94 (176)
+-+.+++++|..+|.++-.+.. ..++.-. ...-+.+|++|-.. +.+.....+....+..|..+-...|-.|.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~------~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKE------SSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh------cchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 3457899999999988732211 0111111 23345677777654 47888888888887756555555555443
Q ss_pred HHHHhccCHHHHHHHHHhcccC--CCC------------ccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh----cccccc
Q 036589 95 SFYGRARLLEHALQVFDEMPSF--NVQ------------RTVKSLNTLLNALLTCGKLDRMKELFISFNL----KAIAVL 156 (176)
Q Consensus 95 ~~~~~~g~~~~a~~~~~~m~~~--~~~------------p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~----~~~~~p 156 (176)
. .+.+++.+|.+.|..-.+. +.. +|...=++.++++...|.+.++..++++|.. .... .
T Consensus 89 ~--Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~-w 165 (549)
T PF07079_consen 89 A--YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECE-W 165 (549)
T ss_pred H--HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhc-c
Confidence 2 3778899999888766543 222 2334456778999999999999999988864 4455 7
Q ss_pred chHHHHHHHHHhhc
Q 036589 157 DGLCSNLKIIMNDS 170 (176)
Q Consensus 157 ~~~t~~~li~~~~~ 170 (176)
+..+||-++-.+.+
T Consensus 166 ~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 166 NSDMYDRAVLMLSR 179 (549)
T ss_pred cHHHHHHHHHHHhH
Confidence 88899987666654
No 210
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.03 E-value=0.64 Score=36.71 Aligned_cols=131 Identities=13% Similarity=0.082 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589 7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE 86 (176)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~ 86 (176)
+.|...|++-.|..-+..|..+|-+..+. +-..++++.++++|..++. |+...|.++|+-=... -||
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~---------~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d 464 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE---------GIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPD 464 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc---------CCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCC
Confidence 46778899999999999999999999433 3467899999999987764 6788899999875544 244
Q ss_pred hHHH-HHHHHHHHhccCHHHHHHHHHhcccCCCCcc--HhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589 87 EIIF-CNVISFYGRARLLEHALQVFDEMPSFNVQRT--VKSLNTLLNALLTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 87 ~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~ 151 (176)
...| +--+..+.+.++-..|..+|+.-+.. +.-+ ...|-.+|.-=..-|++..|..+=++|.+.
T Consensus 465 ~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 465 STLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred chHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 4444 45677778889999999999965521 1122 456888998889999998888888887764
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.76 Score=33.79 Aligned_cols=141 Identities=9% Similarity=-0.074 Sum_probs=94.4
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCC-CCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNP-NANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE 86 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~ 86 (176)
-|+.|.+.+.-...+++-+..|+.-.. +.. . ...-+.-..+.+.++.++...|.+.-....++++.+. ..+.+
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESs----v-~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~ 211 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESS----I-RLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQE 211 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhH----H-HHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCccc
Confidence 356666666555555555555544311 100 0 0000012345566788888899999999999999997 66778
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH-----HHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL-----NALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-----~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
......|.+.--..|+.+.|...|+...+..-+.|..+++.+. ..|...+++..|...|.+....+..
T Consensus 212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~ 284 (366)
T KOG2796|consen 212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR 284 (366)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC
Confidence 8888889999999999999999999777544355666666554 3455677888888888887665443
No 212
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.97 E-value=0.6 Score=30.44 Aligned_cols=87 Identities=8% Similarity=0.150 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH
Q 036589 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133 (176)
Q Consensus 54 y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 133 (176)
...++..+...+....+..+++.+... +. .+....|.++..|++.. ..+.+..++. .++......++..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~-~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKL-NS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHcc-Cc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 446888888889999999999999988 53 67889999999999874 4555666663 123344445666666
Q ss_pred hcCcHHHHHHHHHHHH
Q 036589 134 TCGKLDRMKELFISFN 149 (176)
Q Consensus 134 ~~g~~~~a~~l~~~m~ 149 (176)
+.+.++++.-++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 81 KAKLYEEAVELYKKDG 96 (140)
T ss_pred HcCcHHHHHHHHHhhc
Confidence 6666666666666553
No 213
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.93 Score=35.02 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=73.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhcC----CCC---------CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHH
Q 036589 59 TKLGRAKMFDEMQQILHQLKHDT----RVI---------PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125 (176)
Q Consensus 59 ~~~~~~g~~~~a~~~~~~m~~~~----g~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 125 (176)
+.+.+.|++..|..-|+...... +.. .-..+++.|.-+|.+.+++.+|++..+..+..+ ++|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 46678899999999888755431 111 233677889999999999999999999888665 5677666
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 126 NTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 126 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
--=-.+|...|+++.|...|+.+.+..+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 66678888899999999999999876443
No 214
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.94 E-value=0.061 Score=26.36 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHH
Q 036589 125 LNTLLNALLTCGKLDRMKELFIS 147 (176)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~l~~~ 147 (176)
|+.|-..|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445555555555555555555
No 215
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.24 Score=36.94 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=37.9
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC
Q 036589 62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ 119 (176)
Q Consensus 62 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 119 (176)
-+.|+++.|.+-|+...+-.|+.|- ..||.-+-.| +.|+.+.|+....++.++|++
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 4677788888888877777566553 4566444444 567778888877777766643
No 216
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=1.4 Score=34.54 Aligned_cols=126 Identities=12% Similarity=0.107 Sum_probs=90.5
Q ss_pred HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHH----Hhhc--------
Q 036589 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFR-YNLLHYDLIITKLGRAKMFDEMQQILHQ----LKHD-------- 80 (176)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~li~~~~~~g~~~~a~~~~~~----m~~~-------- 80 (176)
+++...+++++|.-.|+.. .. +. -+...|.-|+.+|.-.|++.+|..+=++ |..+
T Consensus 342 ~lL~~~~R~~~A~IaFR~A-q~-----------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTA-QM-----------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HHHHhccchHHHHHHHHHH-Hh-----------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 4667789999999999887 22 23 4788999999999999999887754333 3322
Q ss_pred ---------------------CCCCCch-HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcH
Q 036589 81 ---------------------TRVIPEE-IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138 (176)
Q Consensus 81 ---------------------~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 138 (176)
..+.|+- ...+.+...+...|..++++.+++.-... .||....+.|-+.+...+.+
T Consensus 410 ~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 410 TLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred ceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhH
Confidence 0112221 23344667778888888899888876633 48888889999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 036589 139 DRMKELFISFNLKAI 153 (176)
Q Consensus 139 ~~a~~l~~~m~~~~~ 153 (176)
.+|.+-|......++
T Consensus 488 Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHHHHHhcCc
Confidence 988888877655433
No 217
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.75 E-value=0.071 Score=26.11 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMP 114 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~ 114 (176)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999854
No 218
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.64 E-value=1.8 Score=34.65 Aligned_cols=86 Identities=8% Similarity=0.042 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-CccHhHHHHHH
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-QRTVKSLNTLL 129 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll 129 (176)
...-..+-.++.+.|+.++|.+.+.+|.+.....-+......|+.++...+.+.++..++.+-.+... +.-..+|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 34445567777899999999999999987633333556777899999999999999999998764332 22345677666
Q ss_pred HHHHhcC
Q 036589 130 NALLTCG 136 (176)
Q Consensus 130 ~~~~~~g 136 (176)
--+...+
T Consensus 339 LkaRav~ 345 (539)
T PF04184_consen 339 LKARAVG 345 (539)
T ss_pred HHHHhhc
Confidence 4444333
No 219
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=94.64 E-value=0.45 Score=40.90 Aligned_cols=131 Identities=12% Similarity=0.070 Sum_probs=69.4
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
.|..|=..|+...+.-.|.+.|... .+-+ + -+...+......|++..+++.|..+.-...+......-.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KA-FeLD-------a---tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKA-FELD-------A---TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK 562 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCC-------c---hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence 3555666666666777788888776 3321 2 256667777788888888888777633332221000001
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
.-|-.+--.|.+.++..+|+.-|+...+.. +-|..+|..+..+|...|.+.-|.++|.+...
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 111112223344455555555555544322 22445555566666666666666666655433
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.64 E-value=0.76 Score=36.69 Aligned_cols=118 Identities=13% Similarity=0.010 Sum_probs=80.3
Q ss_pred ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHH-HHHHHhcCChHHHHHHHHHHhhcC--CCCCchHHHHHHHH
Q 036589 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLI-ITKLGRAKMFDEMQQILHQLKHDT--RVIPEEIIFCNVIS 95 (176)
Q Consensus 19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l-i~~~~~~g~~~~a~~~~~~m~~~~--g~~~~~~~~~~li~ 95 (176)
..+.+.|.++++.+ ..+ -|+...|.-. .+.+...|++++|.+.|+...... -.+.....+--+..
T Consensus 246 ~~~~~~a~~lL~~~-~~~-----------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w 313 (468)
T PF10300_consen 246 DVPLEEAEELLEEM-LKR-----------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAW 313 (468)
T ss_pred CCCHHHHHHHHHHH-HHh-----------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHH
Confidence 45677899999998 443 2455555433 345557899999999999765421 13445566666888
Q ss_pred HHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHH-HHhcCcH-------HHHHHHHHHHH
Q 036589 96 FYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA-LLTCGKL-------DRMKELFISFN 149 (176)
Q Consensus 96 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~-------~~a~~l~~~m~ 149 (176)
++.-.++|++|.+.|..+.+.. .-+...|.-+..+ +...|+. ++|.++|.+..
T Consensus 314 ~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 314 CHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 8899999999999999999643 2233444433332 2346766 88999998864
No 221
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.69 Score=36.93 Aligned_cols=104 Identities=11% Similarity=0.010 Sum_probs=84.2
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH-hHHHHHHHHHHhcCc
Q 036589 59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV-KSLNTLLNALLTCGK 137 (176)
Q Consensus 59 ~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~ 137 (176)
++.+..|+++.|...|.+...- . ++|.+.|+.-..+|...|++++|.+==.+-.+. .|+. .-|+-.-.++...|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l-~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML-S-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc-C-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 4567789999999999999876 3 348999999999999999999998766665543 3653 568888899999999
Q ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHh
Q 036589 138 LDRMKELFISFNLKAIAVLDGLCSNLKIIMN 168 (176)
Q Consensus 138 ~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~ 168 (176)
+++|..-|.+-.+.... +..-++-+.+++
T Consensus 86 ~~eA~~ay~~GL~~d~~--n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS--NKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcCCc--hHHHHHhHHHhh
Confidence 99999999998876654 666677776666
No 222
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=94.57 E-value=0.84 Score=30.27 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=78.7
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch--HHHHHHHHHHHhccCHHHHHHHHHhcccCC-----
Q 036589 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE--IIFCNVISFYGRARLLEHALQVFDEMPSFN----- 117 (176)
Q Consensus 45 ~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----- 117 (176)
..+.++..+|...|. +....|.+. +..++. ...|+++......+.+.-.+++++.+.-..
T Consensus 8 g~~~~nL~~w~~fi~------------~~~~y~~~~-~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~ 74 (145)
T PF13762_consen 8 GNVLANLEVWKTFIN------------SHLPYMQEE-NASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNII 74 (145)
T ss_pred cchhhhHHHHHHHHH------------HHHHHhhhc-ccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHh
Confidence 344556666655554 233445544 555554 445888888888888887777777764211
Q ss_pred CCccHhHHHHHHHHHHhcCc-HHHHHHHHHHHHhccccccchHHHHHHHHHhhccc
Q 036589 118 VQRTVKSLNTLLNALLTCGK-LDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQV 172 (176)
Q Consensus 118 ~~p~~~~~~~ll~~~~~~g~-~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g 172 (176)
-..+..+|++++++..+..- ---+..+|.-|++.++. ++..-|..||.++.+.-
T Consensus 75 ~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~-~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 75 GWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIE-FTPSDYSCLIKAALRGY 129 (145)
T ss_pred hhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCC
Confidence 12456789999999977666 34567788999888888 99999999999988753
No 223
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.43 E-value=0.011 Score=38.85 Aligned_cols=110 Identities=13% Similarity=0.078 Sum_probs=71.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC
Q 036589 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136 (176)
Q Consensus 57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 136 (176)
+|..+.+.+.+....++++.+... +...+....+.++..|++.++.++.+.+++.... .-...++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence 567777888888888888888877 5567788889999999999888888888774332 22233444444444
Q ss_pred cHHHHHHHHHHHHh-------------------ccccccchHHHHHHHHHhhccccC
Q 036589 137 KLDRMKELFISFNL-------------------KAIAVLDGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 137 ~~~~a~~l~~~m~~-------------------~~~~~p~~~t~~~li~~~~~~g~~ 174 (176)
.+++|.-++.++.. .-...++...|..++..|...+..
T Consensus 85 l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTCT
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCcc
Confidence 44444444443321 000125688999999998877664
No 224
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.31 E-value=0.79 Score=38.89 Aligned_cols=107 Identities=15% Similarity=0.044 Sum_probs=81.2
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHH
Q 036589 62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141 (176)
Q Consensus 62 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 141 (176)
...+++..|.+...++.+..+-.+-...+.++. ..+.|+.++|..+++.....+.. |..|...+-.+|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 456789999998888887733333333333332 24789999999999988765533 889999999999999999999
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589 142 KELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 142 ~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 174 (176)
..+++...+. . |+..--..++.+|+|-+.+
T Consensus 97 ~~~Ye~~~~~--~-P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 97 VHLYERANQK--Y-PSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHHHhh--C-CcHHHHHHHHHHHHHHHHH
Confidence 9999997654 2 6777777888888876654
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.22 E-value=2.3 Score=34.00 Aligned_cols=75 Identities=13% Similarity=0.245 Sum_probs=56.4
Q ss_pred HHHHHHHHhccCHHHHHHHHHhccc-CCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPS-FNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li 165 (176)
..+..++.+.|+.++|++.|++|.+ ....-+......||.++...+.+.++..++.+-.+...++--..+|+.-+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3467788889999999999999974 33223455778999999999999999999999765444313355666544
No 226
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.12 E-value=0.56 Score=28.77 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP 114 (176)
Q Consensus 69 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 114 (176)
++.+-++.+... .+.|......+-+++|.|..++..|+++|+..+
T Consensus 25 e~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444 455555555555555555555555555555444
No 227
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.12 E-value=1.2 Score=30.12 Aligned_cols=76 Identities=18% Similarity=0.095 Sum_probs=48.7
Q ss_pred HHHHHHHHH---HhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589 53 HYDLIITKL---GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129 (176)
Q Consensus 53 ~y~~li~~~---~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 129 (176)
+.+.||... .+.++.++++.++..++--+.-.+...++-..+ +...|+|.+|+++|+++.+.. |....-..|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALl 84 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHH
Confidence 334444443 467899999999999996533333444444433 457899999999999988643 4333333444
Q ss_pred HHH
Q 036589 130 NAL 132 (176)
Q Consensus 130 ~~~ 132 (176)
..|
T Consensus 85 A~C 87 (160)
T PF09613_consen 85 ALC 87 (160)
T ss_pred HHH
Confidence 333
No 228
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.11 E-value=2.8 Score=34.54 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCC
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNP 32 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 32 (176)
+.+.|..+--.+....++++|++.|...
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4567777777777778899999888886
No 229
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.77 E-value=1.9 Score=31.28 Aligned_cols=83 Identities=11% Similarity=-0.022 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHH--HHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHH
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEII--FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 127 (176)
+...+-.....+.+.|++++|.+.|+++.... ....... .-.+..+|.+.+++++|...|++..+.--...-..|-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34444445566677999999999999999873 2222221 23467888999999999999999885432222234445
Q ss_pred HHHHHH
Q 036589 128 LLNALL 133 (176)
Q Consensus 128 ll~~~~ 133 (176)
.+.+.+
T Consensus 110 Y~~g~~ 115 (243)
T PRK10866 110 YMRGLT 115 (243)
T ss_pred HHHHHh
Confidence 555543
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.65 Score=35.85 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=87.4
Q ss_pred HHHhccChhHHHHhhcCCC---C-CCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589 15 LLHLQKHPKLALQLFKNPN---P-NANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF 90 (176)
Q Consensus 15 ~~~~~~~~~~A~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 90 (176)
.|.+.|++..|...|++.. . ...............-...+..+.-++.+.+++..|.+..+..... -..|.-..
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~KAL 294 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNVKAL 294 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCchhHH
Confidence 5778888888888776631 1 1000000000111123446788889999999999999999998876 24566666
Q ss_pred HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH-HHHHHHHhcCcH-HHHHHHHHHHHh
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN-TLLNALLTCGKL-DRMKELFISFNL 150 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~-~~a~~l~~~m~~ 150 (176)
----.+|...|+++.|+..|+.+++.. |+-...+ -|+..--+.... ++..++|..|-.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667788899999999999999998653 6544444 455544454444 455788888854
No 231
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=93.75 E-value=1.7 Score=35.68 Aligned_cols=132 Identities=16% Similarity=0.086 Sum_probs=92.4
Q ss_pred CCCCCCHHH--HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHH-HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036589 3 KAKPTSPFR--LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLL-HYDLIITKLGRAKMFDEMQQILHQLKH 79 (176)
Q Consensus 3 ~p~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~ 79 (176)
+|+...|.. +...+-+.|+++.|...++.. - +..|+.. -|-.-.+.+..+|++++|..++++..+
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~A-I-----------dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA-I-----------DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHH-h-----------ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 466665554 477888899999999999998 2 3345544 455556888889999999999999986
Q ss_pred cCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC-----ccHhHHHHH---HHHHHhcCcHHHHHHHHHHH
Q 036589 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ-----RTVKSLNTL---LNALLTCGKLDRMKELFISF 148 (176)
Q Consensus 80 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~l---l~~~~~~g~~~~a~~l~~~m 148 (176)
- -.+|...=+--.....++.+.++|.++....-+.|.. .+..+.+-+ -.+|.+.|++..|++=|...
T Consensus 434 l--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 434 L--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred c--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 6 2466665556777788899999999999998877741 111222222 25677777777776555443
No 232
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.69 E-value=1.5 Score=30.08 Aligned_cols=81 Identities=10% Similarity=0.167 Sum_probs=58.7
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc--HhHHHHHHHHHHhcCcHHHHHHHHHH
Q 036589 70 MQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT--VKSLNTLLNALLTCGKLDRMKELFIS 147 (176)
Q Consensus 70 a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~l~~~ 147 (176)
-..-++..+.+.+-.--...+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|....-.+++..+...+.+
T Consensus 19 Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 19 LEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3333444444423333346778899999999999999999999987654443 34567788888889999998888877
Q ss_pred HHh
Q 036589 148 FNL 150 (176)
Q Consensus 148 m~~ 150 (176)
...
T Consensus 99 a~~ 101 (177)
T PF10602_consen 99 AES 101 (177)
T ss_pred HHH
Confidence 653
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=2.2 Score=31.74 Aligned_cols=141 Identities=16% Similarity=0.062 Sum_probs=89.4
Q ss_pred HHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHH
Q 036589 15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVI 94 (176)
Q Consensus 15 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li 94 (176)
.....|++.+|..+|+.. .... +. +...--.+..+|...|+.+.|..++..+... --.........-|
T Consensus 143 ~~~~~e~~~~a~~~~~~a-l~~~-------~~---~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i 210 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQA-LQAA-------PE---NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQI 210 (304)
T ss_pred hhhhccchhhHHHHHHHH-HHhC-------cc---cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHH
Confidence 456678888888888876 2210 11 3445556888999999999999999998876 2222233323334
Q ss_pred HHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHh--ccccccchHHHHHHHHHhhcc
Q 036589 95 SFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNL--KAIAVLDGLCSNLKIIMNDSQ 171 (176)
Q Consensus 95 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~--~~~~~p~~~t~~~li~~~~~~ 171 (176)
..+.+.....+...+-....+ .| |...--.+-..+...|+.+.|.+.+-.+.. .+.. |...=..|++.+.-.
T Consensus 211 ~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~--d~~~Rk~lle~f~~~ 285 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE--DGEARKTLLELFEAF 285 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc--CcHHHHHHHHHHHhc
Confidence 444444444433344333332 24 666667788889999999999988777654 3444 566666666666554
Q ss_pred c
Q 036589 172 V 172 (176)
Q Consensus 172 g 172 (176)
|
T Consensus 286 g 286 (304)
T COG3118 286 G 286 (304)
T ss_pred C
Confidence 4
No 234
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=93.62 E-value=2.8 Score=35.20 Aligned_cols=118 Identities=13% Similarity=-0.053 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH
Q 036589 53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132 (176)
Q Consensus 53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 132 (176)
.|......+.+.+..++|...+.+.... .......|.-.-..+...|.+++|.+.|....... +-++.+.+++-..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 4555666777888888998888888765 23444555555567777899999999999877543 23556788899999
Q ss_pred HhcCcHHHHHH--HHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 133 LTCGKLDRMKE--LFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 133 ~~~g~~~~a~~--l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
.+.|+..-|.. ++.++.+.++. +...|-.+-..+-+.|+++
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~--n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPL--NHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccchH
Confidence 99999888887 99999998886 8888888888888888764
No 235
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=93.58 E-value=0.5 Score=40.65 Aligned_cols=131 Identities=9% Similarity=-0.030 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI 84 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~ 84 (176)
+...+....+.|.+..+++.|..+.-.. .+. .+..--..-|--..-.|-+.+++.++..-|+...+. -+
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~-~qk--------a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dP 593 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRA-AQK--------APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DP 593 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHH-hhh--------chHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--Cc
Confidence 4557788899999999999998884444 221 111111122222344556788999999888888765 24
Q ss_pred CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHH--HHHHHhcCcHHHHHHHHHHHH
Q 036589 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL--LNALLTCGKLDRMKELFISFN 149 (176)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l--l~~~~~~g~~~~a~~l~~~m~ 149 (176)
-|...|..+..+|.++|++..|.++|.+.-..+ |+. .|... --..+-.|++++|.+.+....
T Consensus 594 kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 594 KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLS-KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 578899999999999999999999998766432 432 22222 233466788888887776654
No 236
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.51 E-value=0.28 Score=25.06 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=12.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHhccc
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPS 115 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~ 115 (176)
..+..+|.+.|++++|+++|++..+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555555443
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.36 E-value=2.3 Score=31.13 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHhcccCC--CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589 87 EIIFCNVISFYGRARLLEHALQVFDEMPSFN--VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~ 153 (176)
...|+.-+..| +.|++..|.+.|...++.. -.-..-.+-.|..++...|+++.|..+|..+.+...
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 44777666654 7888999999999988543 111334456688999999999999999999876543
No 238
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.29 E-value=0.32 Score=24.07 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=21.0
Q ss_pred HhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 122 VKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 122 ~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
..+++.|-..|...|++++|.+++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677788888888888888888877653
No 239
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.06 E-value=1.3 Score=27.46 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=24.2
Q ss_pred HHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 105 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
+..+-+..+....+.|.+....+.|.+|.+.+++..|.++|+..+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444445555555566666666666666666666666666665543
No 240
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.85 E-value=0.38 Score=23.77 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhc
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEM 113 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m 113 (176)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4444555555555555555544443
No 241
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=3.8 Score=32.94 Aligned_cols=92 Identities=11% Similarity=0.018 Sum_probs=68.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc
Q 036589 58 ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137 (176)
Q Consensus 58 i~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 137 (176)
.+.+.+.|++..|.+.|.++... . +-|...|+...-+|.+.|.+..|+.-.+...+.. ++....|.-=..++....+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr-~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKR-D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHH
Confidence 45556789999999999999887 2 5677899999999999999999988777776542 2233334444445555567
Q ss_pred HHHHHHHHHHHHhcc
Q 036589 138 LDRMKELFISFNLKA 152 (176)
Q Consensus 138 ~~~a~~l~~~m~~~~ 152 (176)
+++|.+.|.+-.+..
T Consensus 442 ydkAleay~eale~d 456 (539)
T KOG0548|consen 442 YDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888998888877753
No 242
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=2.4 Score=35.50 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=76.5
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
|.+-.+.-+...|+-.+|.++=.+. + -||-..|-.-+.+++..+++++.+++=+..+..-|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~F-k-------------ipdKr~~wLk~~aLa~~~kweeLekfAkskksPIG----- 746 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDF-K-------------IPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIG----- 746 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhc-C-------------CcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCC-----
Confidence 4556677777788888888887666 2 23666777778888888888887766665554333
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHH
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~ 146 (176)
|-.++.+|.+.|+.++|...+...... . -...+|.+.|++.+|.++-.
T Consensus 747 --y~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 747 --YLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred --chhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 455778888888888888887766521 1 56677888888888776643
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.44 E-value=2.1 Score=28.14 Aligned_cols=105 Identities=12% Similarity=-0.047 Sum_probs=72.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhH---HHHHHHHHHhc
Q 036589 59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS---LNTLLNALLTC 135 (176)
Q Consensus 59 ~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~ 135 (176)
-+++..|+.+.|.+.|.+...- ..-....||.-..++.-.|+.++|+.=+++..+..-.-+... |.-=-..|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4667899999999999998865 445778999999999999999999998888775321222222 22222345667
Q ss_pred CcHHHHHHHHHHHHhcccc---------ccchHHHHHHH
Q 036589 136 GKLDRMKELFISFNLKAIA---------VLDGLCSNLKI 165 (176)
Q Consensus 136 g~~~~a~~l~~~m~~~~~~---------~p~~~t~~~li 165 (176)
|+-+.|..=|+...+.|.+ .|-....|.|+
T Consensus 129 g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~ML 167 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQML 167 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHH
Confidence 8877777777666554432 15555555554
No 244
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=0.61 Score=35.07 Aligned_cols=99 Identities=13% Similarity=0.059 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589 7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE 86 (176)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~ 86 (176)
.+...++..-....+++.+...+-.+.... .....|+...|. +++-| -.=+++++.-++..=.+. |+-||
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~-------~a~~~~~~~~~~-~irll-lky~pq~~i~~l~npIqY-GiF~d 134 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSP-------NAWYLRNWTIHT-WIRLL-LKYDPQKAIYTLVNPIQY-GIFPD 134 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCc-------chhhhccccHHH-HHHHH-HccChHHHHHHHhCcchh-ccccc
Confidence 344455555555677788877777662221 133444444432 23333 233567888777777777 99999
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHhccc
Q 036589 87 EIIFCNVISFYGRARLLEHALQVFDEMPS 115 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 115 (176)
.++++.+|+.+.+.+++.+|.++...|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999988887776653
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.29 E-value=2.2 Score=28.18 Aligned_cols=81 Identities=5% Similarity=-0.115 Sum_probs=58.7
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN 92 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~ 92 (176)
-....+.|++.+|.+.|+.+ ..+. +.-+.....--.++.+|-+.+++++|...++...+. ...--.+-|-.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L-~~ry-------P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-hP~hp~vdYa~ 87 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEAL-DTRY-------PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-HPTHPNVDYAY 87 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHH-HhcC-------CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCCCccHHH
Confidence 34556789999999999999 5543 333445566777999999999999999999999987 33333455665
Q ss_pred HHHHHHhccC
Q 036589 93 VISFYGRARL 102 (176)
Q Consensus 93 li~~~~~~g~ 102 (176)
.+.+++.-..
T Consensus 88 Y~~gL~~~~~ 97 (142)
T PF13512_consen 88 YMRGLSYYEQ 97 (142)
T ss_pred HHHHHHHHHH
Confidence 6666544333
No 246
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.22 E-value=2.9 Score=29.28 Aligned_cols=100 Identities=8% Similarity=-0.033 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC-CCccHhHHHHH
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV-IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN-VQRTVKSLNTL 128 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l 128 (176)
...+-.....+...|++.+|.+.|+.+...... .--....-.+..++.+.|++++|...|+.+.+.- -.|. ..+-..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y 83 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHH
Confidence 334444566777899999999999999986322 2223344568899999999999999999987532 1121 222222
Q ss_pred HHHHHh-------------cCcHHHHHHHHHHHHhc
Q 036589 129 LNALLT-------------CGKLDRMKELFISFNLK 151 (176)
Q Consensus 129 l~~~~~-------------~g~~~~a~~l~~~m~~~ 151 (176)
+.+.+. .+...+|...|+.+.+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH
Confidence 222221 22345677778777654
No 247
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.00 E-value=2.3 Score=27.92 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ 119 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 119 (176)
+....+..++.+.+.|+-++..+++.++.+. -+++....--+..+|.+.|+..++.+++.+.=+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN--EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4566777889999999999999999999865 3566667777999999999999999999887776643
No 248
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.97 E-value=2.6 Score=28.16 Aligned_cols=77 Identities=18% Similarity=0.075 Sum_probs=49.7
Q ss_pred HHHHHHHHHH---hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589 53 HYDLIITKLG---RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129 (176)
Q Consensus 53 ~y~~li~~~~---~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 129 (176)
..+.||.... ...++++++.++..|.--+.-.+...+|-..+ +...|+|++|+++|++..+.+ + ...|..-|
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~--~-~~p~~kAL 83 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA--G-APPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC--C-CchHHHHH
Confidence 3444444443 57899999999999996533334444554444 457899999999999999754 2 22344444
Q ss_pred HHHHh
Q 036589 130 NALLT 134 (176)
Q Consensus 130 ~~~~~ 134 (176)
.++|-
T Consensus 84 ~A~CL 88 (153)
T TIGR02561 84 LALCL 88 (153)
T ss_pred HHHHH
Confidence 44443
No 249
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.87 E-value=1.9 Score=26.81 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc-cCCCCccHhHHHHHHHH
Q 036589 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP-SFNVQRTVKSLNTLLNA 131 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~ 131 (176)
-+..+-++.+... .+.|......+.+++|.|..++..|+++|+..+ +.| +....|..++.-
T Consensus 27 we~rrglN~l~~~-DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGY-DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTS-SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHhcc-ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 3577778888877 899999999999999999999999999999887 333 222266666543
No 250
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.77 E-value=3.1 Score=28.73 Aligned_cols=146 Identities=13% Similarity=0.090 Sum_probs=97.1
Q ss_pred HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH-HHHHH-
Q 036589 16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI-IFCNV- 93 (176)
Q Consensus 16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~-~~~~l- 93 (176)
+.+.+..++|+.-|..+++.+. .++ | +-.--.+.......|+...|..-|.++-.. .-.|... -..-|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~-------g~Y-p-vLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlr 137 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGY-------GSY-P-VLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLR 137 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCC-------Ccc-h-HHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence 4568899999999999954432 222 2 222223445566889999999999999987 4444433 12222
Q ss_pred -HHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHH--HHHHHHHhhc
Q 036589 94 -ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLC--SNLKIIMNDS 170 (176)
Q Consensus 94 -i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t--~~~li~~~~~ 170 (176)
...+..+|.+++...-.+.+-..+-.--...-..|--+--+.|++.+|.++|.......-. |.... -++|++...+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~a-prnirqRAq~mldlI~s 216 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQA-PRNIRQRAQIMLDLIDS 216 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccC-cHHHHHHHHHHHHHHhc
Confidence 2345678999999999988886554444555667777778999999999999998775444 44332 2344444444
Q ss_pred cc
Q 036589 171 QV 172 (176)
Q Consensus 171 ~g 172 (176)
.|
T Consensus 217 ~g 218 (221)
T COG4649 217 SG 218 (221)
T ss_pred cc
Confidence 33
No 251
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.48 E-value=1.4 Score=27.07 Aligned_cols=63 Identities=6% Similarity=-0.046 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 036589 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM 167 (176)
Q Consensus 103 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~ 167 (176)
.=++.+-+..+....+.|++...++-|++|.+.+++..|.++|+..+.+.- .+..+|..+++-
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lqe 85 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHHH
Confidence 335666677777777889999999999999999999999999987764322 234467666653
No 252
>PRK15331 chaperone protein SicA; Provisional
Probab=91.35 E-value=1.4 Score=29.92 Aligned_cols=89 Identities=12% Similarity=-0.146 Sum_probs=65.5
Q ss_pred HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHH
Q 036589 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV 93 (176)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l 93 (176)
.-+-..|++++|..+|.-+ ..- . ..+..-|.-|..++-..+++++|...|.....- +. -|...+-..
T Consensus 45 y~~y~~Gk~~eA~~~F~~L-~~~--------d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~~-~dp~p~f~a 111 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFL-CIY--------D--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-LK-NDYRPVFFT 111 (165)
T ss_pred HHHHHCCCHHHHHHHHHHH-HHh--------C--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cc-CCCCccchH
Confidence 3455689999999999987 221 1 124556677777778899999999999887655 22 222334446
Q ss_pred HHHHHhccCHHHHHHHHHhccc
Q 036589 94 ISFYGRARLLEHALQVFDEMPS 115 (176)
Q Consensus 94 i~~~~~~g~~~~a~~~~~~m~~ 115 (176)
-.+|...|+.+.|...|+...+
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 7889999999999999998886
No 253
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=91.15 E-value=2.5 Score=26.50 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 123 KSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 123 ~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
.-|..|+..|...|..++|.+++.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3488889999999999999999988876
No 254
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=91.07 E-value=4.8 Score=29.90 Aligned_cols=87 Identities=16% Similarity=0.199 Sum_probs=56.1
Q ss_pred HHHHHHhcCChHHHHHH-HHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH--
Q 036589 57 IITKLGRAKMFDEMQQI-LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL-- 133 (176)
Q Consensus 57 li~~~~~~g~~~~a~~~-~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-- 133 (176)
=|+++++.+++.++... ++.......+.|... ..-|-.|+|.|++....++-..-.+..-.-+..-|.++...|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 48999999999998754 333333323444433 4445668899999888877776654222223333666655554
Q ss_pred ---hcCcHHHHHHHH
Q 036589 134 ---TCGKLDRMKELF 145 (176)
Q Consensus 134 ---~~g~~~~a~~l~ 145 (176)
-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 569999999887
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.90 E-value=4.6 Score=30.96 Aligned_cols=84 Identities=7% Similarity=-0.064 Sum_probs=44.3
Q ss_pred ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH----HHH
Q 036589 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC----NVI 94 (176)
Q Consensus 19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~----~li 94 (176)
+|++++|-..++++ .+.++-|...+.-.=.+|.-.|+...-...++++... -.+|...|. ...
T Consensus 116 ~g~~h~a~~~wdkl-----------L~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKL-----------LDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYA 182 (491)
T ss_pred cccccHHHHHHHHH-----------HHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHH
Confidence 45666665555555 1234456666666666666666666666555555533 123332222 233
Q ss_pred HHHHhccCHHHHHHHHHhccc
Q 036589 95 SFYGRARLLEHALQVFDEMPS 115 (176)
Q Consensus 95 ~~~~~~g~~~~a~~~~~~m~~ 115 (176)
-++..+|-+++|++.-++..+
T Consensus 183 FgL~E~g~y~dAEk~A~ralq 203 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQ 203 (491)
T ss_pred hhHHHhccchhHHHHHHhhcc
Confidence 344456666666655554443
No 256
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=6.6 Score=30.86 Aligned_cols=108 Identities=10% Similarity=-0.040 Sum_probs=74.1
Q ss_pred HhcCChHHHHHHHHHHhhcC--CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH-H--HHHhcC
Q 036589 62 GRAKMFDEMQQILHQLKHDT--RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL-N--ALLTCG 136 (176)
Q Consensus 62 ~~~g~~~~a~~~~~~m~~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~--~~~~~g 136 (176)
.+.|.+..|.+.|.+..... ..+++...|.....+..+.|+..+|+.-.+...+ .|..-...++ . ++.-.+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHH
Confidence 36799999999999988652 3677888888888999999999999999988874 4544333333 3 333457
Q ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589 137 KLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVR 173 (176)
Q Consensus 137 ~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 173 (176)
+|++|.+-|+...+..-.--...++.-...++-++.|
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence 8888888888765533220244555555544444433
No 257
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.88 E-value=2.2 Score=36.47 Aligned_cols=125 Identities=9% Similarity=0.006 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHhccChhHHHHhhcCCCCCCCC-CCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589 7 TSPFRLASLLHLQKHPKLALQLFKNPNPNAND-TEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP 85 (176)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~ 85 (176)
..|..|.+-|.+..+++-|.-.+-.|+..+++ +.+..... |+ ..=..+.-.-...|.+++|..+|.+-++.
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~--~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN--GE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC--Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 46888899999999999888888887433321 00000000 11 11122223335789999999999998876
Q ss_pred chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHH
Q 036589 86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS 147 (176)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~ 147 (176)
-.|=+.|...|.|++|.++-+.=.+- .-..||......+...++.+.|++.|++
T Consensus 830 -----DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 830 -----DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred -----HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 23445677789999999987755432 3345677777788888889988888765
No 258
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.84 E-value=6.6 Score=30.75 Aligned_cols=29 Identities=17% Similarity=0.064 Sum_probs=21.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhccccccch
Q 036589 129 LNALLTCGKLDRMKELFISFNLKAIAVLDG 158 (176)
Q Consensus 129 l~~~~~~g~~~~a~~l~~~m~~~~~~~p~~ 158 (176)
-.++.+.|++.++-.+++.+=+...- |+.
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePH-P~i 298 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPH-PDI 298 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCC-hHH
Confidence 36778888888888888888666554 654
No 259
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.81 E-value=5.4 Score=29.70 Aligned_cols=85 Identities=13% Similarity=0.047 Sum_probs=67.5
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHh-----cccCCCCcc
Q 036589 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDE-----MPSFNVQRT 121 (176)
Q Consensus 47 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~~~~p~ 121 (176)
-.++..+-..+|..+++.+++....++++.-....+..-|...|..+|+.-.+.|+..-...+.++ +.+.++..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~ 277 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVT 277 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCC
Confidence 456777788899999999999999999999887767888999999999999999999888877764 345666555
Q ss_pred HhHHHHHHHH
Q 036589 122 VKSLNTLLNA 131 (176)
Q Consensus 122 ~~~~~~ll~~ 131 (176)
...-..+-..
T Consensus 278 ~~L~~~L~~L 287 (292)
T PF13929_consen 278 DELRSQLSEL 287 (292)
T ss_pred HHHHHHHHHH
Confidence 5444444333
No 260
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.79 E-value=0.046 Score=35.86 Aligned_cols=90 Identities=9% Similarity=0.107 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589 7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE 86 (176)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~ 86 (176)
.....+++.|.+.+.+.....+++.+... +..-+....+.++..|++.++.+..+++++... .+.+
T Consensus 8 ~~~~~vi~~~~~~~~~~~l~~yLe~~~~~----------~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~- 73 (143)
T PF00637_consen 8 LEISEVISAFEERNQPEELIEYLEALVKE----------NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDL- 73 (143)
T ss_dssp SCSCCCHHHCTTTT-GGGCTCCHHHHHHT----------STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-C-
T ss_pred cCHHHHHHHHHhCCCHHHHHHHHHHHHhc----------ccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCH-
Confidence 34455788888889999998888888322 222468899999999999998888888877221 2222
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589 87 EIIFCNVISFYGRARLLEHALQVFDEMP 114 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 114 (176)
..++..|.+.|.+++|.-++..+.
T Consensus 74 ----~~~~~~c~~~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 74 ----DKALRLCEKHGLYEEAVYLYSKLG 97 (143)
T ss_dssp ----THHHHHHHTTTSHHHHHHHHHCCT
T ss_pred ----HHHHHHHHhcchHHHHHHHHHHcc
Confidence 445666666666767666666554
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.71 E-value=1.6 Score=28.64 Aligned_cols=94 Identities=14% Similarity=-0.027 Sum_probs=71.6
Q ss_pred HHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch--HHHHH
Q 036589 15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE--IIFCN 92 (176)
Q Consensus 15 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~--~~~~~ 92 (176)
++...|+.+.|++.|.+. .. -.+.....||.=.+++.-.|+.++|..=+++..+-.|-+--. ..|..
T Consensus 52 alaE~g~Ld~AlE~F~qa-l~----------l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ 120 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQA-LC----------LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ 120 (175)
T ss_pred HHHhccchHHHHHHHHHH-HH----------hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 466789999999999986 22 223467899999999999999999999888888765654322 23333
Q ss_pred HHHHHHhccCHHHHHHHHHhcccCCCC
Q 036589 93 VISFYGRARLLEHALQVFDEMPSFNVQ 119 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~~~~~ 119 (176)
--..|...|+-+.|..=|+...+.|.+
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 345677889999999999988877743
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.67 E-value=5.1 Score=29.21 Aligned_cols=150 Identities=9% Similarity=-0.035 Sum_probs=92.2
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch--HHH
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE--IIF 90 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~--~~~ 90 (176)
...-.+.|++++|.+.|+.+.... +.-+....+--.++.++-+.++++.|....++..+..+-.||. ..|
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~--------p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRH--------PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC--------CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 344556899999999999995332 3334456677778888899999999999999998885555543 333
Q ss_pred HHHHHHHHhcc----C---HHHHHHHHHhccc----CCCCccHhH-----------HH-HHHHHHHhcCcHHHHHHHHHH
Q 036589 91 CNVISFYGRAR----L---LEHALQVFDEMPS----FNVQRTVKS-----------LN-TLLNALLTCGKLDRMKELFIS 147 (176)
Q Consensus 91 ~~li~~~~~~g----~---~~~a~~~~~~m~~----~~~~p~~~~-----------~~-~ll~~~~~~g~~~~a~~l~~~ 147 (176)
-..+..+.... + ..+|..-|+++++ +...||... ++ .+.+-|.+.|.+..|..=+++
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 33333222222 2 2344444444442 333333322 22 344677889999999999999
Q ss_pred HHhccccccchHHH---HHHHHHhhccc
Q 036589 148 FNLKAIAVLDGLCS---NLKIIMNDSQV 172 (176)
Q Consensus 148 m~~~~~~~p~~~t~---~~li~~~~~~g 172 (176)
|.+.-. -+..+. -.|.++|-..|
T Consensus 193 v~e~y~--~t~~~~eaL~~l~eaY~~lg 218 (254)
T COG4105 193 VLENYP--DTSAVREALARLEEAYYALG 218 (254)
T ss_pred HHhccc--cccchHHHHHHHHHHHHHhC
Confidence 988722 233333 33444554444
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.20 E-value=6.9 Score=30.39 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=53.8
Q ss_pred HHHHHHHhccCHHHHHHHHHhcccCC---CCccHhHHHHHHHHHHh---cCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589 92 NVISFYGRARLLEHALQVFDEMPSFN---VQRTVKSLNTLLNALLT---CGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165 (176)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li 165 (176)
.++-.|....+++.-+++.+.+...- +.-+...---+.-++.+ .|+.++|++++..+....-. ++..||..+-
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~-~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN-PDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC-CChHHHHHHH
Confidence 46667999999999999999998641 11122222244455566 89999999999997666666 7778887665
Q ss_pred HHh
Q 036589 166 IMN 168 (176)
Q Consensus 166 ~~~ 168 (176)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 544
No 264
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.03 E-value=3 Score=31.16 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=97.3
Q ss_pred CCCCCHHHHHHHHHhccChhHHHHhhcCCC------CCCCCCC---C-------CCCCCCCCcHHHHHHHHHHHHhcCC-
Q 036589 4 AKPTSPFRLASLLHLQKHPKLALQLFKNPN------PNANDTE---A-------PPLKPFRYNLLHYDLIITKLGRAKM- 66 (176)
Q Consensus 4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~---~-------~~~~~~~~~~~~y~~li~~~~~~g~- 66 (176)
-.+++-..++..+....+..+|-..|.-.. ..+-.+. . ........|+.-|-..+.......+
T Consensus 164 gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inlt 243 (361)
T COG3947 164 GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLT 243 (361)
T ss_pred CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccC
Confidence 345666667777777777666654443210 0000000 0 0123345677777777766655443
Q ss_pred hHHHHHHHHHHhhcCCCCCc-----------------hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589 67 FDEMQQILHQLKHDTRVIPE-----------------EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129 (176)
Q Consensus 67 ~~~a~~~~~~m~~~~g~~~~-----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 129 (176)
++++.++....+.. +-|+ ..+++.+...|.++|.+.+|.++.+...... +.+...+-.|+
T Consensus 244 ide~kelv~~ykgd--yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm 320 (361)
T COG3947 244 IDELKELVGQYKGD--YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLM 320 (361)
T ss_pred HHHHHHHHHHhcCC--cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHH
Confidence 67777766666533 2221 1344556788999999999999999888654 56778888999
Q ss_pred HHHHhcCcHHHHHHHHHHHH-----hccccccchHHHH
Q 036589 130 NALLTCGKLDRMKELFISFN-----LKAIAVLDGLCSN 162 (176)
Q Consensus 130 ~~~~~~g~~~~a~~l~~~m~-----~~~~~~p~~~t~~ 162 (176)
..+...|+--.|.+-+++|. +.|+. .|...++
T Consensus 321 ~~la~~gD~is~~khyerya~vleaelgi~-vddsiee 357 (361)
T COG3947 321 ASLATLGDEISAIKHYERYAEVLEAELGID-VDDSIEE 357 (361)
T ss_pred HHHHHhccchhhhhHHHHHHHHHHHHhCCC-cchhHHH
Confidence 99999999777777776664 46776 6655554
No 265
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.41 E-value=2.8 Score=35.90 Aligned_cols=123 Identities=10% Similarity=0.056 Sum_probs=73.1
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhh----------c--
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH----------D-- 80 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~----------~-- 80 (176)
=..|-..|.+++|+++-+.- .+ -+ --.+|..-..-+-..++.+.|.+.|++--. .
T Consensus 833 NKlyQs~g~w~eA~eiAE~~--DR--------iH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 833 NKLYQSQGMWSEAFEIAETK--DR--------IH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred HHHHHhcccHHHHHHHHhhc--cc--------ee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 34455567888888774433 11 12 234555555666667778887776665221 1
Q ss_pred ------CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC--------------------CCccHhHHHHHHHHHHh
Q 036589 81 ------TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN--------------------VQRTVKSLNTLLNALLT 134 (176)
Q Consensus 81 ------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------------------~~p~~~~~~~ll~~~~~ 134 (176)
..-..|...|.-.-..+-..|+++.|+.+|+...+.= -.-|....-.|...|..
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN 979 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 0112344555555566667899999998887765310 01234445567777888
Q ss_pred cCcHHHHHHHHHHH
Q 036589 135 CGKLDRMKELFISF 148 (176)
Q Consensus 135 ~g~~~~a~~l~~~m 148 (176)
.|++.+|...|-+.
T Consensus 980 ~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRA 993 (1416)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888777654
No 266
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.37 E-value=1.4 Score=20.71 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 036589 53 HYDLIITKLGRAKMFDEMQQILHQLK 78 (176)
Q Consensus 53 ~y~~li~~~~~~g~~~~a~~~~~~m~ 78 (176)
+|..+..++...|++++|...|++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 34444444555555555555554444
No 267
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.78 E-value=0.61 Score=20.86 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=19.9
Q ss_pred CHHHHHHHHHhccChhHHHHhhcC
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKN 31 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~ 31 (176)
....+-..+...|++++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 345678899999999999998864
No 268
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.69 E-value=6.6 Score=30.75 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=55.9
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCchHH--HHHHHHHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHH
Q 036589 63 RAKMFDEMQQILHQLKHDTRVIPEEII--FCNVISFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLD 139 (176)
Q Consensus 63 ~~g~~~~a~~~~~~m~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~ 139 (176)
-.|+.+.|.+-|+.|... |.... ...|.-.-.+.|.-+.|.++-+..-+. .| -...+...+...|..|+++
T Consensus 132 ~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred hcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChH
Confidence 357777777777777754 22222 123333345566666666665554321 22 3456778899999999999
Q ss_pred HHHHHHHHHHhccccccc
Q 036589 140 RMKELFISFNLKAIAVLD 157 (176)
Q Consensus 140 ~a~~l~~~m~~~~~~~p~ 157 (176)
.|++|.+.-++..+.+++
T Consensus 206 ~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 206 GALKLVDAQRAAKVIEKD 223 (531)
T ss_pred HHHHHHHHHHHHHhhchh
Confidence 999999887665443344
No 269
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.32 E-value=4.9 Score=28.88 Aligned_cols=76 Identities=9% Similarity=-0.008 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC--CCCccHhHHHHHHHH
Q 036589 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF--NVQRTVKSLNTLLNA 131 (176)
Q Consensus 54 y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~ 131 (176)
.+.-++.+.+.+.+.++....++-.+.. ..|..+-..+++.||-.|+|++|..-++..-+. ...+-...|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3456777888889999998887777662 345555667889999999999998777765432 223445566666654
No 270
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.12 E-value=1.8 Score=20.34 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 124 SLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
+|..+-..|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555555443
No 271
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=87.86 E-value=3.2 Score=28.78 Aligned_cols=52 Identities=10% Similarity=-0.045 Sum_probs=25.3
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP 114 (176)
Q Consensus 63 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 114 (176)
...+.+......+...+.....|+...|..++.++...|+.++|.+..+++.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444433332344555555555555555555555555555544
No 272
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.79 E-value=4.9 Score=33.52 Aligned_cols=90 Identities=11% Similarity=0.135 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH-------
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV------- 122 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------- 122 (176)
+..+.-.+-..+.+...+.-|-++|+.|-.. .++++.-...++|++|..+-+...+. .||.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqw 813 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQW 813 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHH
Confidence 3444555555555667778888888887655 46778888899999999998887754 2443
Q ss_pred ----hHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589 123 ----KSLNTLLNALLTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 123 ----~~~~~ll~~~~~~g~~~~a~~l~~~m~~~ 151 (176)
.-|.--=.+|-+.|+-.+|.++++.+...
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 22445557788888888888888887643
No 273
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.17 E-value=11 Score=31.27 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 129 (176)
+..-|..|.++..+.+++..|.+.|...... ..|+-.+...|+-+....+=+...+.| ..|.-.
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~----------~~LlLl~t~~g~~~~l~~la~~~~~~g------~~N~AF 728 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARDL----------GSLLLLYTSSGNAEGLAVLASLAKKQG------KNNLAF 728 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcch----------hhhhhhhhhcCChhHHHHHHHHHHhhc------ccchHH
Confidence 3455666666666666666666666655433 233444444444332222222222222 133444
Q ss_pred HHHHhcCcHHHHHHHHHH
Q 036589 130 NALLTCGKLDRMKELFIS 147 (176)
Q Consensus 130 ~~~~~~g~~~~a~~l~~~ 147 (176)
-+|...|+++++.+++.+
T Consensus 729 ~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 556667777777776654
No 274
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.12 E-value=7 Score=28.11 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCCchHHHHHHHHH
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHD-TRVIPEEIIFCNVISF 96 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-~g~~~~~~~~~~li~~ 96 (176)
|.-.-..+++.+|-.|++++|..-++-.-+- ....+...+|..+|.+
T Consensus 34 da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 34 DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4445566888899999999998766665533 1245667777777766
No 275
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=86.86 E-value=3.1 Score=21.83 Aligned_cols=33 Identities=9% Similarity=0.046 Sum_probs=19.3
Q ss_pred HhcCcHHHHHHHHHHHHhccccccchHHHHHHHH
Q 036589 133 LTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII 166 (176)
Q Consensus 133 ~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~ 166 (176)
-+.|.++++..++++|.+.|+- -+...|+.++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~-is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFR-ISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcc-cCHHHHHHHHH
Confidence 4455566666666666666665 55555555543
No 276
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.69 E-value=12 Score=28.79 Aligned_cols=108 Identities=10% Similarity=-0.085 Sum_probs=77.4
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH----HHHHHHHhcCcH
Q 036589 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN----TLLNALLTCGKL 138 (176)
Q Consensus 63 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~g~~ 138 (176)
..|.+.+|-..++++.+. ++-|...++-.=.+|.-.|+.+.-...++++.-.. .++..+|. .+.-++...|.+
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 356777777788888876 67788888888899999999999888888887321 24443333 344455678999
Q ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589 139 DRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 139 ~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
++|++.-++..+-+.. |...--+....+-..||++
T Consensus 192 ~dAEk~A~ralqiN~~--D~Wa~Ha~aHVlem~~r~K 226 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF--DCWASHAKAHVLEMNGRHK 226 (491)
T ss_pred hhHHHHHHhhccCCCc--chHHHHHHHHHHHhcchhh
Confidence 9999999888776553 6666666666665566554
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.44 E-value=7.9 Score=26.20 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=41.1
Q ss_pred HHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH-HHHHhcCcHHHHHHHHHHHHhcc
Q 036589 94 ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL-NALLTCGKLDRMKELFISFNLKA 152 (176)
Q Consensus 94 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~l~~~m~~~~ 152 (176)
+..-.+.++.+++..+++.+.-. .|.....-.+- -.+.++|++.+|.++|+++.+..
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 34445678899999999988754 36554444333 34578999999999999987653
No 278
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.39 E-value=3.1 Score=21.44 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=13.7
Q ss_pred HHHHHHhccCHHHHHHHHHhccc
Q 036589 93 VISFYGRARLLEHALQVFDEMPS 115 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~ 115 (176)
|..+|.+.|+.+.|.+++++..+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 45556666666666666665554
No 279
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.32 E-value=2.3 Score=19.75 Aligned_cols=25 Identities=4% Similarity=0.037 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 036589 54 YDLIITKLGRAKMFDEMQQILHQLK 78 (176)
Q Consensus 54 y~~li~~~~~~g~~~~a~~~~~~m~ 78 (176)
|..+..++.+.|++++|.+.|++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344445555555555555555444
No 280
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=86.07 E-value=2.4 Score=31.70 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=31.0
Q ss_pred CCccHhH-HHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHH
Q 036589 118 VQRTVKS-LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN 162 (176)
Q Consensus 118 ~~p~~~~-~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~ 162 (176)
+.|++.+ ||.-|....+.||+++|+.|++|....|+. --..||-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~-~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST-SARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-hHHHHHH
Confidence 3344444 568888888888888888888888888887 4444443
No 281
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.72 E-value=10 Score=26.72 Aligned_cols=74 Identities=9% Similarity=-0.056 Sum_probs=36.6
Q ss_pred hccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc---cccccchHHHHHHHHHhhccccCC
Q 036589 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK---AIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 99 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~---~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
+.|+ ++|.+.|-.+...+..-++...-.|...|. ..+.+++..++....+. +-. +|+..+..|...|-+.|+++
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~-~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN-FNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHhcchh
Confidence 3343 345555555554443434444444444443 45555666665554431 223 55666666666666655543
No 282
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.49 E-value=15 Score=31.53 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=34.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP 114 (176)
Q Consensus 57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 114 (176)
+|.-|-.+.++.+.-..++.+.+. |+. +...-+.|+.+|.+.++.++-.++.+.-.
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~-gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKK-GLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHc-ccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 455555555566666666666666 543 33333558888888888776666655544
No 283
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.26 E-value=5.3 Score=28.99 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc----cCC-CCccHhHHHHHHHHHHhcCcHHHHHH
Q 036589 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP----SFN-VQRTVKSLNTLLNALLTCGKLDRMKE 143 (176)
Q Consensus 69 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~ 143 (176)
.|...|+..... .--...--.+..-|.+.|++++|.++|+.+. +.| ..+...+...++.++.+.|+.+....
T Consensus 163 ~A~~~f~~~~~~---R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 163 KAYEQFKKYGQN---RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHhccc---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 444444444332 2233344457788889999999999998874 233 45667778888888889999988887
Q ss_pred HHHHHH
Q 036589 144 LFISFN 149 (176)
Q Consensus 144 l~~~m~ 149 (176)
+.-+|.
T Consensus 240 ~~leLl 245 (247)
T PF11817_consen 240 TSLELL 245 (247)
T ss_pred HHHHHh
Confidence 766654
No 284
>PF13934 ELYS: Nuclear pore complex assembly
Probab=84.82 E-value=12 Score=26.81 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=55.5
Q ss_pred HHHHHHHHHh--ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589 9 PFRLASLLHL--QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE 86 (176)
Q Consensus 9 ~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~ 86 (176)
+...+++|.. .+++++|++.+..- ...|+-.. .++.++...|+.+.|.++++.+... .- +
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p-------------s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~-l~--s 140 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP-------------SLIPWFPD--KILQALLRRGDPKLALRYLRAVGPP-LS--S 140 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC-------------CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCC-CC--C
Confidence 3444555554 35566666666443 12222222 3667777777777777777776543 22 2
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh
Q 036589 87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT 134 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 134 (176)
......++.. ..++.+.+|..+-+...+. -....+..++..+..
T Consensus 141 ~~~~~~~~~~-La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 141 PEALTLYFVA-LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHH
Confidence 2222322333 5567777777777766641 113456666655553
No 285
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.42 E-value=9.7 Score=25.33 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----CCCchHHHHHHHHHHHhccC-HHHHHHHHHhcccCCCCccHhHHH
Q 036589 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTR----VIPEEIIFCNVISFYGRARL-LEHALQVFDEMPSFNVQRTVKSLN 126 (176)
Q Consensus 52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~ 126 (176)
...|.++.-....+.+.....+++.+..-.+ -..+...|.+++.+.+.... --.+..+|.-|++.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3567788888888889999888888854311 13566789999999988777 567888999999888899999999
Q ss_pred HHHHHHHhcCcHH
Q 036589 127 TLLNALLTCGKLD 139 (176)
Q Consensus 127 ~ll~~~~~~g~~~ 139 (176)
.+|.++.+....+
T Consensus 120 ~li~~~l~g~~~~ 132 (145)
T PF13762_consen 120 CLIKAALRGYFHD 132 (145)
T ss_pred HHHHHHHcCCCCc
Confidence 9999988864444
No 286
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.30 E-value=8.7 Score=33.24 Aligned_cols=120 Identities=17% Similarity=0.107 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCCh--HHHHHHHHHHhhcCCCC
Q 036589 7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF--DEMQQILHQLKHDTRVI 84 (176)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~--~~a~~~~~~m~~~~g~~ 84 (176)
--|..|+..|...|++++|+++|.+...+.. ...+.. ...+-.++..+.+.+.. +-..+.-++.... ...
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~-----~~d~~~--~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~-~p~ 576 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDS-----DTDSFQ--LDGLEKIIEYLKKLGAENLDLILEYADWVLNK-NPE 576 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhcccc-----ccccch--hhhHHHHHHHHHHhcccchhHHHHHhhhhhcc-Cch
Confidence 3578899999999999999999999833210 012222 22344477777777665 6666666666655 222
Q ss_pred CchHHHHH------------HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh
Q 036589 85 PEEIIFCN------------VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT 134 (176)
Q Consensus 85 ~~~~~~~~------------li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 134 (176)
.....|+. .+-.|.+....+-++..++.+....-.++....|.++..|+.
T Consensus 577 ~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 577 AGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 22222222 344556777788889999988876667788888998888875
No 287
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.29 E-value=3.7 Score=21.17 Aligned_cols=24 Identities=4% Similarity=0.149 Sum_probs=22.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhc
Q 036589 57 IITKLGRAKMFDEMQQILHQLKHD 80 (176)
Q Consensus 57 li~~~~~~g~~~~a~~~~~~m~~~ 80 (176)
+..+|.+.|+.+.|..+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 678999999999999999999966
No 288
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=84.29 E-value=17 Score=28.10 Aligned_cols=136 Identities=9% Similarity=-0.014 Sum_probs=90.0
Q ss_pred HHHHhccChhHHHHhhcCCCCCCCCCCCC---CCCCCCCcHHHHH--HHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH
Q 036589 14 SLLHLQKHPKLALQLFKNPNPNANDTEAP---PLKPFRYNLLHYD--LIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI 88 (176)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~y~--~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~ 88 (176)
..+.+.|.+++|..=|+.. .....+++. ....+.+....|+ ..+..+...|+...|......+.+- ..=|..
T Consensus 114 ~vllK~Gele~A~~DF~~v-l~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQV-LQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHH-HhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhH
Confidence 3567899999999999987 333211110 0000111111222 2234455678999999999998865 344777
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~ 153 (176)
.|..-..+|...|++..|+.=++..-... .-|+..+--+-..+-..|+.+.++...++..+.+.
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp 254 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP 254 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc
Confidence 88888999999999999988777655332 34566666677777788888888888888766543
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=84.11 E-value=13 Score=31.48 Aligned_cols=68 Identities=12% Similarity=0.036 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHH-------HHHhcCChHHHHHHHH
Q 036589 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIIT-------KLGRAKMFDEMQQILH 75 (176)
Q Consensus 3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~-------~~~~~g~~~~a~~~~~ 75 (176)
.|.|..|..|..+-...-.++.|...|-+. ..- +|++. +.-..++.+ .-+--|+|++|+++|-
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc-~dY--------~Gik~-vkrl~~i~s~~~q~aei~~~~g~feeaek~yl 758 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC-GDY--------AGIKL-VKRLRTIHSKEQQRAEISAFYGEFEEAEKLYL 758 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh-ccc--------cchhH-HHHhhhhhhHHHHhHhHhhhhcchhHhhhhhh
Confidence 477778888888777777888888888776 332 23321 011111110 1112488999999888
Q ss_pred HHhhc
Q 036589 76 QLKHD 80 (176)
Q Consensus 76 ~m~~~ 80 (176)
++-++
T Consensus 759 d~drr 763 (1189)
T KOG2041|consen 759 DADRR 763 (1189)
T ss_pred ccchh
Confidence 88776
No 290
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.08 E-value=3.1 Score=19.36 Aligned_cols=26 Identities=8% Similarity=0.048 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 036589 53 HYDLIITKLGRAKMFDEMQQILHQLK 78 (176)
Q Consensus 53 ~y~~li~~~~~~g~~~~a~~~~~~m~ 78 (176)
+|..+...|...|++++|...|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 291
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=83.78 E-value=1.4 Score=28.81 Aligned_cols=34 Identities=12% Similarity=-0.001 Sum_probs=24.0
Q ss_pred HHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHh
Q 036589 132 LLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMN 168 (176)
Q Consensus 132 ~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~ 168 (176)
+.+.|.-..|..+|++|++.|-+ || .|+.|+...
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~p-Pd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNP-PD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCC-Cc--cHHHHHHHh
Confidence 34456666788888888888888 87 466666543
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.76 E-value=1.6 Score=20.95 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHH
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQ 71 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~ 71 (176)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 7788888888888888888875
No 293
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=83.75 E-value=16 Score=27.41 Aligned_cols=89 Identities=16% Similarity=0.246 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh--ccC----HHHHHHHHHhcccCC---CCccHhHHHHHHHHHHhcCc
Q 036589 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR--ARL----LEHALQVFDEMPSFN---VQRTVKSLNTLLNALLTCGK 137 (176)
Q Consensus 67 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~--~g~----~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~ 137 (176)
+++...+++.|++. |++-+..+|-+....... ..+ ...|..+|+.|++.. ..++-.++..||.. ..++
T Consensus 78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 56677899999999 999998888663333322 222 567889999999643 23455667777655 3333
Q ss_pred ----HHHHHHHHHHHHhccccccch
Q 036589 138 ----LDRMKELFISFNLKAIAVLDG 158 (176)
Q Consensus 138 ----~~~a~~l~~~m~~~~~~~p~~ 158 (176)
.++++.+|+.+.+.|+.+-|.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~ 179 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGND 179 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcH
Confidence 467888899998888863333
No 294
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.71 E-value=18 Score=30.69 Aligned_cols=13 Identities=15% Similarity=0.118 Sum_probs=7.4
Q ss_pred cChhHHHHhhcCC
Q 036589 20 KHPKLALQLFKNP 32 (176)
Q Consensus 20 ~~~~~A~~~~~~~ 32 (176)
|++++|.+++-++
T Consensus 748 g~feeaek~yld~ 760 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDA 760 (1189)
T ss_pred cchhHhhhhhhcc
Confidence 4555565555555
No 295
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.49 E-value=26 Score=30.26 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=81.4
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHH----HHHhcCChHHHHHHHHHHhhcCCCC
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIIT----KLGRAKMFDEMQQILHQLKHDTRVI 84 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~----~~~~~g~~~~a~~~~~~m~~~~g~~ 84 (176)
.-.-++.+.+...+.-|+.+-+.- .. +......+.. .+-+.|++++|...|-+-... ++
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~-~~--------------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le 399 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ-HL--------------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LE 399 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc-CC--------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CC
Confidence 344566677777778888775554 11 3344333444 444789999999888776643 34
Q ss_pred CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148 (176)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m 148 (176)
| ..+|.-|.++.++.+-..+++.+.+.|+. +...-+.||++|.+.++.++-.++.+.-
T Consensus 400 ~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 400 P-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred h-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 4 34677777888888888899999888854 7777889999999999877766555443
No 296
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.48 E-value=12 Score=25.58 Aligned_cols=92 Identities=21% Similarity=0.242 Sum_probs=56.7
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHH
Q 036589 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125 (176)
Q Consensus 46 ~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 125 (176)
+++|+...|..+|+.+.+.|++..... +.+. ++-+|.......+-.+.. ....+.++=-+|.. .=...+
T Consensus 24 ~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~-~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk----RL~~~~ 92 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNGQFSQLHQ----LLQY-HVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK----RLGTAY 92 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhh-cccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH----HhhhhH
Confidence 567888999999999999999776644 4444 555666555544433222 22333333333331 111245
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHH
Q 036589 126 NTLLNALLTCGKLDRMKELFISF 148 (176)
Q Consensus 126 ~~ll~~~~~~g~~~~a~~l~~~m 148 (176)
..++..+...|++-+|.++.+..
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 66777777888888888777664
No 297
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=83.30 E-value=21 Score=28.46 Aligned_cols=118 Identities=12% Similarity=0.045 Sum_probs=69.7
Q ss_pred HHHHHhccChhHHHHhhc--CCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----------
Q 036589 13 ASLLHLQKHPKLALQLFK--NPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD---------- 80 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---------- 80 (176)
.....-.++++++.++.+ ++ - +.+ .....+.++..+-+.|..+.|..+-++-..+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~l-l----------~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNL-L----------PNI--PKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHT-G----------GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhh-c----------ccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCH
Confidence 344555788888655554 22 0 111 2455788899999999999988865443322
Q ss_pred ------CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589 81 ------TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152 (176)
Q Consensus 81 ------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 152 (176)
..-..+...|..|-+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.++..++-+.....|
T Consensus 335 ~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 12334667888888888888888888888887764 5566666666677666666655554443
No 298
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.18 E-value=13 Score=27.02 Aligned_cols=71 Identities=13% Similarity=-0.006 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH----hccccccchHHHHHHHHHhhccccCC
Q 036589 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN----LKAIAVLDGLCSNLKIIMNDSQVRVT 175 (176)
Q Consensus 103 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~----~~~~~~p~~~t~~~li~~~~~~g~~~ 175 (176)
+..|.+.|+...+. .--...---|-.-|.+.|++++|.++|+.+. +.|+..+...+-..+..++.+.|+.+
T Consensus 161 L~~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 161 LEKAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 56777777766642 2333444467788999999999999999884 35665467777788888888877754
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.91 E-value=3.3 Score=18.94 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=11.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhc
Q 036589 58 ITKLGRAKMFDEMQQILHQLKHD 80 (176)
Q Consensus 58 i~~~~~~g~~~~a~~~~~~m~~~ 80 (176)
..++.+.|++++|.+.|+++.+.
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 34444445555555555554443
No 300
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.56 E-value=5.7 Score=24.71 Aligned_cols=86 Identities=13% Similarity=-0.034 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHH
Q 036589 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146 (176)
Q Consensus 67 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~ 146 (176)
.++|.-|=+.+... +-. ....--+-+..+...|++++|..+.+.+- .||...|-+|-. .+.|..+++..-+.
T Consensus 21 HqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45566666665544 211 22222222334445677777777766663 577766665533 35566666666666
Q ss_pred HHHhccccccchHHHH
Q 036589 147 SFNLKAIAVLDGLCSN 162 (176)
Q Consensus 147 ~m~~~~~~~p~~~t~~ 162 (176)
+|...|- |....|.
T Consensus 93 rla~sg~--p~lq~Fa 106 (115)
T TIGR02508 93 RLAASGD--PRLQTFV 106 (115)
T ss_pred HHHhCCC--HHHHHHH
Confidence 6666555 3444443
No 301
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=82.33 E-value=6.6 Score=24.88 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhcc
Q 036589 67 FDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRAR 101 (176)
Q Consensus 67 ~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g 101 (176)
-+++.+.+.++++..|+.| |+..--++...+..-.
T Consensus 5 S~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~ 40 (113)
T PF08870_consen 5 SKKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPS 40 (113)
T ss_pred CHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCC
Confidence 3578889999998889999 7776666655554433
No 302
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.03 E-value=8.2 Score=26.71 Aligned_cols=54 Identities=7% Similarity=-0.090 Sum_probs=39.0
Q ss_pred hccCHHHHHHHHHhcc-cCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589 99 RARLLEHALQVFDEMP-SFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152 (176)
Q Consensus 99 ~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 152 (176)
..++.+......+... -....|+...|..++..+...|+.++|.++.+++...-
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4455444443333332 12336999999999999999999999999999987653
No 303
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=81.53 E-value=23 Score=27.49 Aligned_cols=55 Identities=5% Similarity=-0.167 Sum_probs=32.8
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 78 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 78 (176)
+..+.-.|+...|+.++..+ .+ --+.|...|-.=..+|...|++..|..=++...
T Consensus 162 l~s~~~~GD~~~ai~~i~~l-lE----------i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as 216 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHL-LE----------IQPWDASLRQARAKCYIAEGEPKKAIHDLKQAS 216 (504)
T ss_pred HHHHhcCCchhhHHHHHHHH-Hh----------cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34444567777777777776 22 123356666666667777777766665444433
No 304
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=81.28 E-value=19 Score=26.39 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=44.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhccCHHHHHHHHHhcccC-CCCccHhHHHHHHHHHH
Q 036589 58 ITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSF-NVQRTVKSLNTLLNALL 133 (176)
Q Consensus 58 i~~~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~ 133 (176)
+..-.+.|++++|.+.|+.+.......| ...+.-.++.++-+.+++++|+..+++..+. +-.|| .-|-..|.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHH
Confidence 3344566777777777777776532222 2344445667777777777777777776643 22333 33555555555
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.17 E-value=14 Score=24.78 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=37.9
Q ss_pred hccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589 18 LQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 80 (176)
Q Consensus 18 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 80 (176)
+.++++++..+++.| .-- .+-.+...++...+ +...|++++|.++|.++.+.
T Consensus 22 ~~~d~~D~e~lLdAL-rvL--------rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDAL-RVL--------RPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHH-HHh--------CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 378888888888887 221 23334555665554 47899999999999999988
No 306
>PF13934 ELYS: Nuclear pore complex assembly
Probab=80.95 E-value=18 Score=25.96 Aligned_cols=104 Identities=16% Similarity=0.064 Sum_probs=64.1
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589 53 HYDLIITKLGR--AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130 (176)
Q Consensus 53 ~y~~li~~~~~--~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 130 (176)
.|-..++++.- ++++++|.+.+ ... .+.|+... -++.++.+.|+...|.++++.+.-.. .+....+.++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L---~~p-s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELL---SHP-SLIPWFPD--KILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHh---CCC-CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHH
Confidence 46667888875 45677776666 222 23333332 37888888999999999999877221 12222334444
Q ss_pred HHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589 131 ALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169 (176)
Q Consensus 131 ~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~ 169 (176)
. ..++.+.+|..+-+...+. -....+..++..+.
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~----~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDE----LRRRLFEQLLEHCL 183 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchh----hhHHHHHHHHHHHH
Confidence 4 6678999998887776552 12345555555555
No 307
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.88 E-value=26 Score=33.82 Aligned_cols=122 Identities=15% Similarity=0.070 Sum_probs=81.5
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF 90 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 90 (176)
.+..+-.+++.+.+|+..|+.-.... +.-.-...-|-.+...|+..++++.+..+...-... | ..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~e--------k~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~----~--sl- 1452 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTE--------KEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD----P--SL- 1452 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccc--------chhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC----c--cH-
Confidence 34456778899999999999831111 111223445555666999999999998887753322 1 12
Q ss_pred HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m 148 (176)
..-|.-....|+|..|...|+.+.+.+ ++...+++-+++.-...|.++.+.-..+..
T Consensus 1453 ~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1453 YQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcch
Confidence 234445567899999999999999765 333777887777777777777666544443
No 308
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=80.69 E-value=13 Score=24.22 Aligned_cols=45 Identities=7% Similarity=0.125 Sum_probs=31.3
Q ss_pred HHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 106 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
..+.+..+....+.|++.....-|.++.+.+++..|.++|+-.+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334455555666677777777777777777777777777777653
No 309
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.69 E-value=10 Score=32.08 Aligned_cols=87 Identities=10% Similarity=-0.075 Sum_probs=52.9
Q ss_pred HhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccc
Q 036589 77 LKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVL 156 (176)
Q Consensus 77 m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p 156 (176)
+....|.....-+.+--+.-+...|+..+|.++=++.+ .||-..|..=+.+++..+++++-+++-+.++. .
T Consensus 674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-P---- 744 (829)
T KOG2280|consen 674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-P---- 744 (829)
T ss_pred HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-C----
Confidence 33333444555555566666677777777777777776 57777777777777777777776666555432 1
Q ss_pred chHHHHHHHHHhhccccC
Q 036589 157 DGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 157 ~~~t~~~li~~~~~~g~~ 174 (176)
.-|.-.+.+|.++|+.
T Consensus 745 --IGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 745 --IGYLPFVEACLKQGNK 760 (829)
T ss_pred --CCchhHHHHHHhcccH
Confidence 1244445555555544
No 310
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=80.66 E-value=20 Score=26.43 Aligned_cols=100 Identities=9% Similarity=0.032 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCh---HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHH
Q 036589 52 LHYDLIITKLGRAKMF---DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128 (176)
Q Consensus 52 ~~y~~li~~~~~~g~~---~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 128 (176)
.+...++.+|...+.. ++|..+++.+....|-+|.... --++.+.+.++.+.+.+.+..|...- ......|..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~--L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFL--LKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHH--HHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 4566677777777665 4566777778766444444443 33556666899999999999998542 2244556666
Q ss_pred HHHHHh--cCcHHHHHHHHHHHHhcccc
Q 036589 129 LNALLT--CGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 129 l~~~~~--~g~~~~a~~l~~~m~~~~~~ 154 (176)
+..+.. ......|...+..+....+.
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~ 189 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFK 189 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhC
Confidence 666632 23345566666666544444
No 311
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=80.48 E-value=21 Score=26.39 Aligned_cols=127 Identities=14% Similarity=0.151 Sum_probs=77.8
Q ss_pred HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHH------HHHHHHHHHHhcCChHHHHHHHHHHhhc-------CC
Q 036589 16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLL------HYDLIITKLGRAKMFDEMQQILHQLKHD-------TR 82 (176)
Q Consensus 16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------~y~~li~~~~~~g~~~~a~~~~~~m~~~-------~g 82 (176)
-.+.|+.+.|..++.+. +... ....|+.. .|+.-...+.+..+++.|...+++..+- ..
T Consensus 3 A~~~~~~~~A~~~~~K~-~~~~-------~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~ 74 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKA-KDLL-------NSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK 74 (278)
T ss_pred chhhCCHHHHHHHHHHh-hhHH-------hcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence 35789999999999998 3321 13334333 3444344444432777776655553322 01
Q ss_pred CCCc-----hHHHHHHHHHHHhccCH---HHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589 83 VIPE-----EIIFCNVISFYGRARLL---EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 83 ~~~~-----~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~ 151 (176)
..|+ ..+...++.+|...+.. ++|.++++.+.+.. .-.+..+-.-|..+.+.++.+++.+.+.+|...
T Consensus 75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 75 LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2222 24556678888887774 56677777775322 122455556667777789999999999999875
No 312
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=80.48 E-value=14 Score=31.14 Aligned_cols=76 Identities=12% Similarity=-0.006 Sum_probs=37.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHhccCHH------HHHHHHHhcccCCCCccHhHHHHH
Q 036589 56 LIITKLGRAKMFDEMQQILHQLKHDT-RVIPEEIIFCNVISFYGRARLLE------HALQVFDEMPSFNVQRTVKSLNTL 128 (176)
Q Consensus 56 ~li~~~~~~g~~~~a~~~~~~m~~~~-g~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~l 128 (176)
.++.+|...|++-++.++++.+.... |-+.=...+|.-|+-..+.|.++ .|-+.+++ ..+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHH
Confidence 46666666666666666666555331 22223334455555555555532 22222222 2234455566555
Q ss_pred HHHHHh
Q 036589 129 LNALLT 134 (176)
Q Consensus 129 l~~~~~ 134 (176)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 555444
No 313
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=80.48 E-value=4.8 Score=22.72 Aligned_cols=51 Identities=8% Similarity=0.118 Sum_probs=29.2
Q ss_pred CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc
Q 036589 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC 135 (176)
Q Consensus 84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 135 (176)
.|....++.++..+++---+++++..+.+..+.|. .+..+|---++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666553 3444555444555443
No 314
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=80.18 E-value=1.5 Score=28.70 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=27.2
Q ss_pred HHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH
Q 036589 96 FYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132 (176)
Q Consensus 96 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 132 (176)
...+.|.-.+|..+|+.|++.|-+|| .|+.|+...
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 33455777889999999999998887 477777654
No 315
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=80.12 E-value=10 Score=23.72 Aligned_cols=91 Identities=12% Similarity=0.017 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHH
Q 036589 68 DEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~ 146 (176)
++|...+.++++..|+.| |+.+--++...+..-..+.... .-...|+..|-.||. |+++.....+-
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~----~~~d~~~E~~~~T~~---------Ge~~~i~~alL 71 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVAD----IKLDGNVEIDWYTFA---------GEYGDIYLALL 71 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCccc----cCCCCCeEEEeeeec---------CchHHHHHHHH
Confidence 578899999999989999 6666555544443322222110 001233334444433 66665555444
Q ss_pred HHH--hccccccchHHHHHHHHHhhccc
Q 036589 147 SFN--LKAIAVLDGLCSNLKIIMNDSQV 172 (176)
Q Consensus 147 ~m~--~~~~~~p~~~t~~~li~~~~~~g 172 (176)
... ..++. +|...+...+.++...|
T Consensus 72 kq~~~~~~~~-~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 72 KQRCVADGPE-LDDESLAKALNLHVHRG 98 (105)
T ss_pred HHHHHccCCC-CCHHHHHHHHHHHHHHH
Confidence 433 45666 77777777776665443
No 316
>PRK11906 transcriptional regulator; Provisional
Probab=79.22 E-value=31 Score=27.64 Aligned_cols=48 Identities=6% Similarity=0.012 Sum_probs=20.0
Q ss_pred HhccCHHHHHHHHHhcccCCCCccHh-HHHHHHHHHHhcCcHHHHHHHHHH
Q 036589 98 GRARLLEHALQVFDEMPSFNVQRTVK-SLNTLLNALLTCGKLDRMKELFIS 147 (176)
Q Consensus 98 ~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~l~~~ 147 (176)
.-.|+++.|..+|++....+ ||.. .|...--.++-+|+.++|.+.+++
T Consensus 349 ~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 349 GLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444555555555444332 3322 122222223334555555555554
No 317
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=79.09 E-value=28 Score=27.12 Aligned_cols=153 Identities=11% Similarity=-0.011 Sum_probs=83.2
Q ss_pred HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh---cCChHHHHHHHHHHhhcCCCCCchH
Q 036589 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR---AKMFDEMQQILHQLKHDTRVIPEEI 88 (176)
Q Consensus 12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~---~g~~~~a~~~~~~m~~~~g~~~~~~ 88 (176)
++-+|....+++.-+++.+.+..-.. ..+.-+..+---..-++-+ .|+.++|.+++..+... .-.++..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~-------~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d 218 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPT-------CDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPD 218 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCc-------cchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChH
Confidence 34468888899999999999932210 1111122221122333445 89999999999995555 4556666
Q ss_pred HHHHHHHHHHh---------ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc-HH---HHHHHH---HH-HHhc
Q 036589 89 IFCNVISFYGR---------ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK-LD---RMKELF---IS-FNLK 151 (176)
Q Consensus 89 ~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~---~a~~l~---~~-m~~~ 151 (176)
+|..+-+.|-+ ...+++|+..|.+--+. .||.++=-.+...+...|+ .+ +..++- .. ..+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 77766555422 23478888888865433 3555442233333333332 11 222222 22 2233
Q ss_pred ccc--ccchHHHHHHHHHhhccccC
Q 036589 152 AIA--VLDGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 152 ~~~--~p~~~t~~~li~~~~~~g~~ 174 (176)
|.. ..|-+-+.++++++.=.|+.
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~ 321 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDY 321 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCH
Confidence 321 14566667777777766654
No 318
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=78.95 E-value=3.7 Score=28.73 Aligned_cols=56 Identities=13% Similarity=0.254 Sum_probs=45.7
Q ss_pred HHHHHHHhccCHHHHHHHHHhcccCCCC--------------ccHhHHHHHHHHHHhcCcHHHHHHHHHH
Q 036589 92 NVISFYGRARLLEHALQVFDEMPSFNVQ--------------RTVKSLNTLLNALLTCGKLDRMKELFIS 147 (176)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~~m~~~~~~--------------p~~~~~~~ll~~~~~~g~~~~a~~l~~~ 147 (176)
+++..|-+.-+|.++..+++.|.+..+. +--...|.-...|.+.|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 5788899999999999999888764322 3345688889999999999999999984
No 319
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.87 E-value=23 Score=25.90 Aligned_cols=28 Identities=4% Similarity=0.266 Sum_probs=19.0
Q ss_pred HhccCHHHHHHHHHhcccCCCCccHhHH
Q 036589 98 GRARLLEHALQVFDEMPSFNVQRTVKSL 125 (176)
Q Consensus 98 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 125 (176)
+..+++.+|+.+|++.....+..+..-|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 4567788899999888765554444333
No 320
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.36 E-value=35 Score=27.81 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-------------CccHhHHHHHHHHHHh
Q 036589 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-------------QRTVKSLNTLLNALLT 134 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------------~p~~~~~~~ll~~~~~ 134 (176)
++..+.+..+.+..|+..+......++... .|++..|..++++....|- .++......+++++..
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~ 258 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA 258 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 333444444444337777776666665553 6899999999987664431 1223334455555544
Q ss_pred cCcHHHHHHHHHHHHhccccccchHH
Q 036589 135 CGKLDRMKELFISFNLKAIAVLDGLC 160 (176)
Q Consensus 135 ~g~~~~a~~l~~~m~~~~~~~p~~~t 160 (176)
|+.+++.+++++|.+.|.. |....
T Consensus 259 -~d~~~~l~~~~~l~~~g~~-~~~il 282 (509)
T PRK14958 259 -KAGDRLLGCVTRLVEQGVD-FSNAL 282 (509)
T ss_pred -CCHHHHHHHHHHHHHcCCC-HHHHH
Confidence 8899999999999999988 75433
No 321
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=78.05 E-value=8 Score=20.23 Aligned_cols=32 Identities=13% Similarity=0.284 Sum_probs=16.2
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCCchHHHHHHH
Q 036589 62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVI 94 (176)
Q Consensus 62 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li 94 (176)
.+.|..+++...+++|.+. |+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~-g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQA-GFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHc-CcccCHHHHHHHH
Confidence 3444455555555555544 5555555554444
No 322
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.85 E-value=12 Score=22.10 Aligned_cols=46 Identities=7% Similarity=-0.082 Sum_probs=23.5
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCch-HHHHHHHHHHHhccCHHHHHH
Q 036589 63 RAKMFDEMQQILHQLKHDTRVIPEE-IIFCNVISFYGRARLLEHALQ 108 (176)
Q Consensus 63 ~~g~~~~a~~~~~~m~~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~ 108 (176)
...+.++|...|+...+...-.++. .++..++.+|+..|.+.+.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666655552112221 344556666666666655543
No 323
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=77.26 E-value=13 Score=24.62 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=20.0
Q ss_pred HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC
Q 036589 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 136 (176)
+++.+...++.-.|.++|+.+.+.+...+..|.-.-|+.+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 44444444444555555555554443333333333334433333
No 324
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.09 E-value=4.9 Score=17.29 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=10.6
Q ss_pred HHHHHHHHhccCHHHHHHHHHhc
Q 036589 91 CNVISFYGRARLLEHALQVFDEM 113 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m 113 (176)
..+...+...|++++|...|+..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444444455554444443
No 325
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=76.88 E-value=12 Score=23.17 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=14.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHh
Q 036589 56 LIITKLGRAKMFDEMQQILHQLK 78 (176)
Q Consensus 56 ~li~~~~~~g~~~~a~~~~~~m~ 78 (176)
.++..|...|+.++|...++++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 35556666677777777776654
No 326
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=76.85 E-value=6.4 Score=32.87 Aligned_cols=92 Identities=17% Similarity=0.120 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHH---------HHHHhhcCCCCCchHHHHHHHHHHHhccC--HHHHHHHHHhcccCC
Q 036589 49 YNLLHYDLIITKLGRAKMFDEMQQI---------LHQLKHDTRVIPEEIIFCNVISFYGRARL--LEHALQVFDEMPSFN 117 (176)
Q Consensus 49 ~~~~~y~~li~~~~~~g~~~~a~~~---------~~~m~~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~ 117 (176)
|....+.+=+..|...|.+++|.++ |+.+-.+ ..+...|+.-=++|.+..+ +-+.+.-++++++.|
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 3444555556666777777776652 2222222 1234445555566666554 445555566777777
Q ss_pred CCccHhHHHHHHHHHHhcCcHHHHHHHHH
Q 036589 118 VQRTVKSLNTLLNALLTCGKLDRMKELFI 146 (176)
Q Consensus 118 ~~p~~~~~~~ll~~~~~~g~~~~a~~l~~ 146 (176)
-.|+... +...++-.|++.+|.++|.
T Consensus 631 e~P~~iL---lA~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 631 ETPNDLL---LADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred CCchHHH---HHHHHHhhhhHHHHHHHHH
Confidence 6666543 2233344444444444443
No 327
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=76.63 E-value=5.7 Score=22.09 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 103 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
++...++++.+... ..|..---.+|.+|...|++++|.+.++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444444421 24444445677777888888888877777654
No 328
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.41 E-value=39 Score=27.36 Aligned_cols=91 Identities=10% Similarity=0.097 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC---CC----------ccHhHHHHHHHHHHh
Q 036589 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN---VQ----------RTVKSLNTLLNALLT 134 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~----------p~~~~~~~ll~~~~~ 134 (176)
++..+.++.+.+..|+..+......+... ..|++..|+.++++....+ +. .+...+..++++...
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~ 260 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLID 260 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 33445555554444777777776655544 4689999999998754321 11 122334556666666
Q ss_pred cCcHHHHHHHHHHHHhccccccchHHH
Q 036589 135 CGKLDRMKELFISFNLKAIAVLDGLCS 161 (176)
Q Consensus 135 ~g~~~~a~~l~~~m~~~~~~~p~~~t~ 161 (176)
.+....|+.++++|.+.|.. |.....
T Consensus 261 ~d~~~~al~~l~~l~~~G~d-~~~~~~ 286 (484)
T PRK14956 261 PDNHSKSLEILESLYQEGQD-IYKFLW 286 (484)
T ss_pred CCcHHHHHHHHHHHHHcCCC-HHHHHH
Confidence 66678999999999999987 775544
No 329
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=76.12 E-value=29 Score=27.85 Aligned_cols=73 Identities=10% Similarity=0.024 Sum_probs=53.2
Q ss_pred HHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS 170 (176)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 170 (176)
.|+.-|.-.|++.+|.++++++.- -+-...+.+.+++.+..+.|+-...+.++++.-..|.. |-+.|-.+|-|
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI-----T~nQMtkGf~R 586 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI-----TTNQMTKGFER 586 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce-----eHHHhhhhhhh
Confidence 477888888999999999887751 12235677889999999999988888888877666555 55555555543
No 330
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=76.03 E-value=30 Score=27.83 Aligned_cols=107 Identities=10% Similarity=0.104 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH
Q 036589 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133 (176)
Q Consensus 54 y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 133 (176)
-..|+.-|.-.|++.+|.+..+++--. +--..+.+-+++.+.-+.|+-...+.++++.-.. ...|-|-|-++|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP--fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~ 585 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP--FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC--cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhh
Confidence 456788888899999999998887643 4456788899999999999988777777777654 4566777888887
Q ss_pred hcCc--------HHHHHHHHHHHHhccccccchHHHHHHHHHh
Q 036589 134 TCGK--------LDRMKELFISFNLKAIAVLDGLCSNLKIIMN 168 (176)
Q Consensus 134 ~~g~--------~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~ 168 (176)
+..+ +-.|.+.|+...+.+.. +...|-.|...|
T Consensus 586 RV~dsl~DlsLDvPna~ekf~~~Ve~~~~--~G~i~~~l~~~~ 626 (645)
T KOG0403|consen 586 RVYDSLPDLSLDVPNAYEKFERYVEECFQ--NGIISKQLRDLC 626 (645)
T ss_pred hhhccCcccccCCCcHHHHHHHHHHHHHH--cCchhHHhhhcc
Confidence 7543 34566777777666554 344444444443
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.64 E-value=62 Score=29.26 Aligned_cols=92 Identities=11% Similarity=0.102 Sum_probs=51.6
Q ss_pred CCCCcHHHHHHHHHHHH----hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc
Q 036589 46 PFRYNLLHYDLIITKLG----RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT 121 (176)
Q Consensus 46 ~~~~~~~~y~~li~~~~----~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 121 (176)
-++|+...+..+..+|+ ..+++++|--.|+..-+. .--+.+|..+|+|.+|+.+-.++... -+
T Consensus 930 ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql~~~---~d 996 (1265)
T KOG1920|consen 930 LYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL----------EKALKAYKECGDWREALSLAAQLSEG---KD 996 (1265)
T ss_pred eeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHHHHHhhcCC---HH
Confidence 34555555555554444 345556655555443332 23567777777887777777766521 12
Q ss_pred HhH--HHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 122 VKS--LNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 122 ~~~--~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
... --.|..-+...++.-+|.++..+..+
T Consensus 997 e~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 997 ELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 211 24566666667777666666666544
No 332
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=75.40 E-value=17 Score=24.12 Aligned_cols=63 Identities=10% Similarity=0.057 Sum_probs=45.1
Q ss_pred HHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVR 173 (176)
Q Consensus 109 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 173 (176)
+.+.+.+.|++++.. --.++..+...++.-.|.++++++.+.+.. .+..|-=--++.+...|-
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~-islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPG-ISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCC-CCHhHHHHHHHHHHHCCC
Confidence 444556677766544 567888888888889999999999998777 665555555566666654
No 333
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=75.22 E-value=10 Score=21.38 Aligned_cols=51 Identities=6% Similarity=-0.183 Sum_probs=42.3
Q ss_pred CccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcc
Q 036589 119 QRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQ 171 (176)
Q Consensus 119 ~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~ 171 (176)
.|....++-++..+++..-++.++..+.+..+.|.. +..+|---+..++|.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I--~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI--DLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Confidence 577888999999999999999999999999998886 777887777776653
No 334
>PLN03025 replication factor C subunit; Provisional
Probab=75.19 E-value=33 Score=25.88 Aligned_cols=89 Identities=12% Similarity=0.006 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC-C-----------CCccHhHHHHHHHHHHhc
Q 036589 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF-N-----------VQRTVKSLNTLLNALLTC 135 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-----------~~p~~~~~~~ll~~~~~~ 135 (176)
++....++.+.+..|+..+......++... .|++..++..++..... + -.+.......+++.. ..
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~~ 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-LK 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-Hc
Confidence 445555555544448877777777777653 58888888888753311 1 112223344455554 45
Q ss_pred CcHHHHHHHHHHHHhccccccchHH
Q 036589 136 GKLDRMKELFISFNLKAIAVLDGLC 160 (176)
Q Consensus 136 g~~~~a~~l~~~m~~~~~~~p~~~t 160 (176)
+++++|...+.+|.+.|++ |....
T Consensus 238 ~~~~~a~~~l~~ll~~g~~-~~~Il 261 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYS-PTDII 261 (319)
T ss_pred CCHHHHHHHHHHHHHcCCC-HHHHH
Confidence 8899999999999999998 76433
No 335
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.79 E-value=15 Score=27.67 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=28.5
Q ss_pred CCCCcHHH-HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589 46 PFRYNLLH-YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC 91 (176)
Q Consensus 46 ~~~~~~~~-y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~ 91 (176)
.+.||... |+..|..-.+.|++++|++++++.++. |+.--..+|-
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~L-G~~~Ar~tFi 296 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERL-GSTSARSTFI 296 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCchHHHHHH
Confidence 33345444 457777777777777777777777777 6655444443
No 336
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.73 E-value=22 Score=26.81 Aligned_cols=59 Identities=8% Similarity=-0.096 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP 114 (176)
Q Consensus 54 y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 114 (176)
.+.+-..|.+.|.+.+|.++.+....- -+.+...+-.|+..+...|+--.+...++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445557788999999999999998876 46788888899999999999777777776654
No 337
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=74.70 E-value=23 Score=29.23 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 129 (176)
+...-..++..|.+.|..+.|.++++.+-.. -. ...-|..-+..+.++|+....-.+-+.+.+..+..+......++
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~-~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll 480 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQR-LL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLL 480 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH-HH--HHHHHHHHHHHHH-------------------------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 4556788999999999999999999988766 22 34567777888888888776665555544322221111111111
Q ss_pred -------------HHH---------HhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589 130 -------------NAL---------LTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165 (176)
Q Consensus 130 -------------~~~---------~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li 165 (176)
..| .+.|++.+|.+++-.+....+. |...-...|.
T Consensus 481 ~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~-Pk~f~~~LL~ 537 (566)
T PF07575_consen 481 DNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIA-PKSFWPLLLC 537 (566)
T ss_dssp ----------------------------------------------------------
T ss_pred HHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCC-cHHHHHHHHH
Confidence 111 2346677777777777777776 6655444443
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.32 E-value=49 Score=27.00 Aligned_cols=96 Identities=19% Similarity=0.137 Sum_probs=70.3
Q ss_pred HHHHHHHHhcCChHHHHH-HHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH
Q 036589 55 DLIITKLGRAKMFDEMQQ-ILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133 (176)
Q Consensus 55 ~~li~~~~~~g~~~~a~~-~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 133 (176)
..-|.--...|++..|-+ ++.-++.. .-.|+.+..-+.| ....|.++.+.+.+..... -+..+..+-.+++....
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~-~~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK-IIGTTDSTLRCRLRSLH 368 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh-hhcCCchHHHHHHHhhh
Confidence 334555556788877665 55555544 6677776665555 3578999999999887652 12356678889999999
Q ss_pred hcCcHHHHHHHHHHHHhcccc
Q 036589 134 TCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 134 ~~g~~~~a~~l~~~m~~~~~~ 154 (176)
+.|++++|..+-.-|....|.
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie 389 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIE 389 (831)
T ss_pred chhhHHHHHHHHHHHhccccC
Confidence 999999999999999888776
No 339
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=73.14 E-value=17 Score=30.69 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=54.1
Q ss_pred HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHH------HHHHHHHHhhcCCC
Q 036589 10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDE------MQQILHQLKHDTRV 83 (176)
Q Consensus 10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~------a~~~~~~m~~~~g~ 83 (176)
.+|+.+|...|++-++.++++.+ .... ++-+.-...||..|+...+.|.|+- |.+.+++.. +
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~-~~~~-------~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~----l 99 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSF-IDHN-------KGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR----L 99 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH-hcCC-------cCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh----c
Confidence 37999999999999999999987 3321 4555567788889999999998743 333333333 4
Q ss_pred CCchHHHHHHHHHH
Q 036589 84 IPEEIIFCNVISFY 97 (176)
Q Consensus 84 ~~~~~~~~~li~~~ 97 (176)
.-|..||..++.+-
T Consensus 100 n~d~~t~all~~~s 113 (1117)
T COG5108 100 NGDSLTYALLCQAS 113 (1117)
T ss_pred CCcchHHHHHHHhh
Confidence 55777777766553
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.06 E-value=14 Score=28.56 Aligned_cols=53 Identities=9% Similarity=-0.050 Sum_probs=32.9
Q ss_pred HHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 036589 15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 78 (176)
Q Consensus 15 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 78 (176)
-|.+.|.+++|+..|..- - .-.+.+++.|..=..+|.+.++|..|+.=.+...
T Consensus 106 ~yFKQgKy~EAIDCYs~~-i----------a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTA-I----------AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhh-h----------ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 456677777887777664 1 1223366666666677777777776665444444
No 341
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=71.27 E-value=24 Score=24.06 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=15.7
Q ss_pred ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC
Q 036589 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136 (176)
Q Consensus 100 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 136 (176)
.++.-.|.++++.+.+.+..++..|.---|..+...|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3334444444444444443334444333344444333
No 342
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=71.09 E-value=70 Score=27.80 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC---C----------CccHhHHHHHHHHHHh
Q 036589 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN---V----------QRTVKSLNTLLNALLT 134 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~----------~p~~~~~~~ll~~~~~ 134 (176)
++..+.++++.+..|+..+......+.+. ..|++.+|+.++++....+ + .++...+..++..+.
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~- 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA- 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 34445555554443666666665555444 3688999988877654322 1 233344555666544
Q ss_pred cCcHHHHHHHHHHHHhccccccc
Q 036589 135 CGKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 135 ~g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
.++..+++.+++++...|+. +.
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~-~~ 279 (830)
T PRK07003 258 AGDGPEILAVADEMALRSLS-FS 279 (830)
T ss_pred cCCHHHHHHHHHHHHHhCCC-HH
Confidence 48999999999999988876 44
No 343
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.97 E-value=20 Score=21.58 Aligned_cols=66 Identities=8% Similarity=-0.024 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHH
Q 036589 70 MQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142 (176)
Q Consensus 70 a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 142 (176)
+.+++..+.+. |+ .+..-...+-.+-...|+.+.|.+++..+. .| +..|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~-~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQ-GL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhc-CC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 33455555555 32 222222322222234466666666666666 32 234566666666666555444
No 344
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.63 E-value=8.7 Score=17.21 Aligned_cols=29 Identities=10% Similarity=-0.064 Sum_probs=17.0
Q ss_pred CcHHHHHHHHHHHHhccccccchHHHHHHHH
Q 036589 136 GKLDRMKELFISFNLKAIAVLDGLCSNLKII 166 (176)
Q Consensus 136 g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~ 166 (176)
|+.++|..+|+.+...... +...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~--~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPK--SVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC--ChHHHHHHHH
Confidence 4566777777777654432 5555555443
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.39 E-value=35 Score=24.11 Aligned_cols=82 Identities=11% Similarity=0.004 Sum_probs=57.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhccc---CCCCccHhHHHHHHHHHHhc
Q 036589 59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS---FNVQRTVKSLNTLLNALLTC 135 (176)
Q Consensus 59 ~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~ 135 (176)
......-.-+.|.+.|-++... +.--+......|...|. ..+.+++++++-...+ .+-.+|+..+.+|.+.+-+.
T Consensus 114 Yy~Wsr~~d~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 114 YYHWSRFGDQEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HHHhhccCcHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 3344444457788888888877 54445555555555554 6778888888876653 33367888999999999999
Q ss_pred CcHHHHH
Q 036589 136 GKLDRMK 142 (176)
Q Consensus 136 g~~~~a~ 142 (176)
|+++.|.
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 9988875
No 346
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=70.25 E-value=21 Score=21.47 Aligned_cols=88 Identities=9% Similarity=0.151 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHhc-cChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036589 4 AKPTSPFRLASLLHLQ-KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR 82 (176)
Q Consensus 4 p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g 82 (176)
|.|.+..-....+.+. ++.+...+++..+ ++..|..++..-....-+.+..+++......
T Consensus 2 ~~P~~~~eF~~~w~~~~~~~~~~~~yL~~i-----------------~p~~l~~if~~~l~~~~L~~il~~l~~~~~~-- 62 (94)
T PF13877_consen 2 PAPKNSYEFERDWRRLKKDPEERYEYLKSI-----------------PPDSLPKIFKNSLEPEFLSEILEALNEHFIP-- 62 (94)
T ss_pred cCCCCHHHHHHHHHHHcCCHHHHHHHHHhC-----------------ChHHHHHHHHccCCHHHHHHHHHHHHHHHcc--
Confidence 3455555566666665 6667777777777 5566666666544444444444444433221
Q ss_pred CCCchHHHHHHHHHHHhccCHHHHHHHHHh
Q 036589 83 VIPEEIIFCNVISFYGRARLLEHALQVFDE 112 (176)
Q Consensus 83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 112 (176)
.+...--.++.++++.++++-+...+..
T Consensus 63 --~~~~~i~~~L~~L~~~~RF~l~~~fl~~ 90 (94)
T PF13877_consen 63 --EDPEFIFEILEALSKVKRFDLAVMFLSS 90 (94)
T ss_pred --CCHHHHHHHHHHhcCCCCHHHHHHhcCH
Confidence 1222444577778888888887766654
No 347
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=69.30 E-value=13 Score=23.53 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCH
Q 036589 53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103 (176)
Q Consensus 53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~ 103 (176)
.-..++..+......-.|.++++.+.+. +...+..|.-.-|+.+.+.|-+
T Consensus 9 ~R~~Il~~l~~~~~~~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 9 QRLAILELLKESPEHLTAEEIYDKLRKK-GPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHHT-TTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhhhc-cCCcCHHHHHHHHHHHHHCCeE
Confidence 3445677777777778888888888877 7777777666667777776653
No 348
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=69.20 E-value=73 Score=27.26 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC---CC----------ccHhHHHHHHHHHH
Q 036589 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN---VQ----------RTVKSLNTLLNALL 133 (176)
Q Consensus 67 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~----------p~~~~~~~ll~~~~ 133 (176)
.++....+....+..|+..+......|++.. .|++..++.+++++...| +. .+......|+.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 3555556665555557887877777777664 599999999998765432 11 12334555666665
Q ss_pred hcCcHHHHHHHHHHHHhccccccc
Q 036589 134 TCGKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 134 ~~g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
+ ++..+++.++++|...|+. +.
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d-~~ 279 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVG-FD 279 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCC-HH
Confidence 5 8899999999999998886 54
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.19 E-value=38 Score=27.57 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=77.9
Q ss_pred HhccChhHH-HHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 036589 17 HLQKHPKLA-LQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVIS 95 (176)
Q Consensus 17 ~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~ 95 (176)
...|++..| .++|..+ ... ++ -|+..-.-+.| ....|.++.+.+.+...... +.....+..++++
T Consensus 300 ~~~gd~~aas~~~~~~l-r~~--------~~-~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r 365 (831)
T PRK15180 300 LADGDIIAASQQLFAAL-RNQ--------QQ-DPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLR 365 (831)
T ss_pred hhccCHHHHHHHHHHHH-HhC--------CC-CchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHH
Confidence 345666655 4455555 331 22 34444433333 46789999998888777654 4556778888999
Q ss_pred HHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589 96 FYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 96 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~ 151 (176)
-..+.|++++|..+-+-|....+. +.....+-..+.-..|-++++...+++....
T Consensus 366 ~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 366 SLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 999999999999998888865543 3333333334445567788888877776543
No 350
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=68.50 E-value=17 Score=22.66 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=37.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHH
Q 036589 56 LIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104 (176)
Q Consensus 56 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~ 104 (176)
.++..+...+..-.|.++++.+.+. +...+..|.-..|+.+.+.|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~-~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKK-GPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhCCCEE
Confidence 3566666667777899999999988 77778887777888888887644
No 351
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=68.40 E-value=59 Score=25.89 Aligned_cols=90 Identities=9% Similarity=-0.075 Sum_probs=64.8
Q ss_pred HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHH--
Q 036589 16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV-- 93 (176)
Q Consensus 16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l-- 93 (176)
..+.|++.+|.+.+.+...-. ..+..|+...|...-....+.|+.++|..-.+...+-. ...+..-+
T Consensus 259 ~fk~G~y~~A~E~Yteal~id-------P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD----~syikall~r 327 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNID-------PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID----SSYIKALLRR 327 (486)
T ss_pred HhhccchhHHHHHHHHhhcCC-------ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC----HHHHHHHHHH
Confidence 456899999999999973222 35677888888888888899999999998888777541 12222222
Q ss_pred HHHHHhccCHHHHHHHHHhcccC
Q 036589 94 ISFYGRARLLEHALQVFDEMPSF 116 (176)
Q Consensus 94 i~~~~~~g~~~~a~~~~~~m~~~ 116 (176)
.+++...++|++|.+-|++..+.
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455567899999999877643
No 352
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=68.40 E-value=48 Score=24.90 Aligned_cols=20 Identities=10% Similarity=-0.075 Sum_probs=10.7
Q ss_pred HHHHHhccChhHHHHhhcCC
Q 036589 13 ASLLHLQKHPKLALQLFKNP 32 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~ 32 (176)
..+..+.|+++.-.+.....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~ 24 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQS 24 (352)
T ss_pred HHHHHhcCChhhHHHHHhhc
Confidence 34555666666644444444
No 353
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=68.33 E-value=31 Score=25.78 Aligned_cols=109 Identities=11% Similarity=0.066 Sum_probs=56.8
Q ss_pred HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC 91 (176)
Q Consensus 12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~ 91 (176)
++....+..+..+.++.++.+ + ....-...++.+...|++..|.+++.+..+.. . ...-|+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i-~---------------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~-~l~~~~ 164 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQI-K---------------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL--E-ELKGYS 164 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--H-hcccch
Confidence 445555555555555555555 1 34444556677777888888888777776541 0 111111
Q ss_pred HHHHHHHhccCHHHHHHHHHhcccC-----CCCccHhHHHHHHHHHHhcCcHHHHH
Q 036589 92 NVISFYGRARLLEHALQVFDEMPSF-----NVQRTVKSLNTLLNALLTCGKLDRMK 142 (176)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~g~~~~a~ 142 (176)
++=..- .++++-....+++.+. -...|+..|..++.+|.-.|+...+.
T Consensus 165 c~~~L~---~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 165 CVRHLS---SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 111111 1122222222222211 01467788888888888888765544
No 354
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.51 E-value=46 Score=27.86 Aligned_cols=85 Identities=9% Similarity=-0.031 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI 84 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~ 84 (176)
+..-|..|-++..+.+++..|.+.|... .. |..|+-.+...|+.+....+=...++. |
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a-~d------------------~~~LlLl~t~~g~~~~l~~la~~~~~~-g-- 722 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRA-RD------------------LGSLLLLYTSSGNAEGLAVLASLAKKQ-G-- 722 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhh-cc------------------hhhhhhhhhhcCChhHHHHHHHHHHhh-c--
Confidence 4456888888888899999998888776 22 445777788888887776666666665 3
Q ss_pred CchHHHHHHHHHHHhccCHHHHHHHHHhccc
Q 036589 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPS 115 (176)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 115 (176)
..|.-..+|...|+++++.+++.+-.+
T Consensus 723 ----~~N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 723 ----KNNLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred ----ccchHHHHHHHcCCHHHHHHHHHhcCc
Confidence 235556678889999999999987653
No 355
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=67.47 E-value=48 Score=25.63 Aligned_cols=69 Identities=12% Similarity=0.196 Sum_probs=43.0
Q ss_pred HHHHHHHhccCHHHHHHHHHhcccCCCCccHhH---HHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHH
Q 036589 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKS---LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN 162 (176)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~ 162 (176)
.|.-+..+.|+..+|.+.|+.+.+. .|-... ...||.++....-+..+..++.+..+-..++.-..+|+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHH
Confidence 3555666788999999999876633 232222 34678888777777777777766655444422233443
No 356
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.36 E-value=31 Score=22.23 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=29.1
Q ss_pred HHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHH
Q 036589 105 HALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFIS 147 (176)
Q Consensus 105 ~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~ 147 (176)
.+.++|+.|.+.|+-. .+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7777777777666543 345566677777777888888877764
No 357
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=67.33 E-value=17 Score=21.14 Aligned_cols=83 Identities=7% Similarity=0.008 Sum_probs=42.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHh---HHHHHHHHHHhc
Q 036589 59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK---SLNTLLNALLTC 135 (176)
Q Consensus 59 ~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~ 135 (176)
...++.|+++-+..+++ . +...+. -+..+...+..|+.+-+..+++ .|..++.. -++.|.. .+..
T Consensus 2 ~~A~~~~~~~~~~~ll~----~-~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~-A~~~ 69 (89)
T PF12796_consen 2 HIAAQNGNLEILKFLLE----K-GADINL--GNTALHYAAENGNLEIVKLLLE----NGADINSQDKNGNTALHY-AAEN 69 (89)
T ss_dssp HHHHHTTTHHHHHHHHH----T-TSTTTS--SSBHHHHHHHTTTHHHHHHHHH----TTTCTT-BSTTSSBHHHH-HHHT
T ss_pred HHHHHcCCHHHHHHHHH----C-cCCCCC--CCCHHHHHHHcCCHHHHHHHHH----hcccccccCCCCCCHHHH-HHHc
Confidence 34567777777766666 2 333332 2225555567787655554444 44444443 2333333 4556
Q ss_pred CcHHHHHHHHHHHHhccccccch
Q 036589 136 GKLDRMKELFISFNLKAIAVLDG 158 (176)
Q Consensus 136 g~~~~a~~l~~~m~~~~~~~p~~ 158 (176)
|+.+ +++-+.+.|.. ++.
T Consensus 70 ~~~~----~~~~Ll~~g~~-~~~ 87 (89)
T PF12796_consen 70 GNLE----IVKLLLEHGAD-VNI 87 (89)
T ss_dssp THHH----HHHHHHHTTT--TTS
T ss_pred CCHH----HHHHHHHcCCC-CCC
Confidence 6654 44555566665 553
No 358
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=67.09 E-value=80 Score=27.60 Aligned_cols=86 Identities=15% Similarity=0.076 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC-C---CC----------ccHhHHHHHHHHHH
Q 036589 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF-N---VQ----------RTVKSLNTLLNALL 133 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~---~~----------p~~~~~~~ll~~~~ 133 (176)
+...+++.++.+..|+..+......++... .|++..++..++++... + +. .+......+++++.
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~ 259 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALA 259 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 334444555444336766666666555543 47888888888876521 1 11 11222334555555
Q ss_pred hcCcHHHHHHHHHHHHhccccccc
Q 036589 134 TCGKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 134 ~~g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
.++...+..+++++.+.|.. |.
T Consensus 260 -~~D~a~al~~l~~Li~~G~d-p~ 281 (824)
T PRK07764 260 -AGDGAALFGTVDRVIEAGHD-PR 281 (824)
T ss_pred -cCCHHHHHHHHHHHHHcCCC-HH
Confidence 57788999999999888776 54
No 359
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.08 E-value=25 Score=21.13 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=13.2
Q ss_pred HHHHHHhccCHHHHHHHHHhcc
Q 036589 93 VISFYGRARLLEHALQVFDEMP 114 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~ 114 (176)
+.......|++++|.+.+++.+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3444555666666666666554
No 360
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=66.77 E-value=42 Score=23.62 Aligned_cols=99 Identities=9% Similarity=0.009 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCCchHHHHHHHH-HHHhccC--HHHHHHHHHhcccCCCCccH----
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-VIPEEIIFCNVIS-FYGRARL--LEHALQVFDEMPSFNVQRTV---- 122 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g-~~~~~~~~~~li~-~~~~~g~--~~~a~~~~~~m~~~~~~p~~---- 122 (176)
+.-++...-.....|++++|.+-++++.+... ++--...|..+.. +++.++. +-+|..+|.-.... ..|++
T Consensus 29 i~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL~ 107 (204)
T COG2178 29 IVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEELG 107 (204)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHcC
Confidence 34455555566677889999888887765411 2222345555555 5555554 56777776666543 33433
Q ss_pred hHHHHHHHHHH--------------hcCcHHHHHHHHHHHHh
Q 036589 123 KSLNTLLNALL--------------TCGKLDRMKELFISFNL 150 (176)
Q Consensus 123 ~~~~~ll~~~~--------------~~g~~~~a~~l~~~m~~ 150 (176)
+.+-..|.+.+ +.|+++.|.+.++-|..
T Consensus 108 V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 108 VPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22333444443 67889999998888864
No 361
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=66.72 E-value=36 Score=23.18 Aligned_cols=59 Identities=10% Similarity=-0.166 Sum_probs=39.4
Q ss_pred cccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVR 173 (176)
Q Consensus 113 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 173 (176)
+.+.|++++.. --.++..+...+..-.|.+|++.+.+.+.. ++..|----|+.+.+.|-
T Consensus 17 L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~-is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 17 CAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQ-AKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCC-CCcchHHHHHHHHHHCCC
Confidence 34556665554 335666666666677899999999988876 676665555666666553
No 362
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.59 E-value=34 Score=22.41 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP 114 (176)
Q Consensus 69 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 114 (176)
+..+-++.+..- .+.|+....-.-++++.+..++..|+++|+-.+
T Consensus 67 EvrkglN~l~~y-DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDY-DLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhcc-ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345555565555 666777666777777777777777777777665
No 363
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=66.55 E-value=26 Score=24.76 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=45.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhc-------------CCCCCchHHHHHHHHHHHhccCHHHHHHHHHh
Q 036589 56 LIITKLGRAKMFDEMQQILHQLKHD-------------TRVIPEEIIFCNVISFYGRARLLEHALQVFDE 112 (176)
Q Consensus 56 ~li~~~~~~g~~~~a~~~~~~m~~~-------------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 112 (176)
+++..|.+..++.++.++++.|.+- .+..+--...|.-...+.+.|.++.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4677788888899999998888764 12344456778888999999999999999984
No 364
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=66.22 E-value=52 Score=24.51 Aligned_cols=115 Identities=15% Similarity=0.002 Sum_probs=67.6
Q ss_pred hhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcc
Q 036589 22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRAR 101 (176)
Q Consensus 22 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g 101 (176)
...|.+.|+.+..... +.+ ...++.....++....+.|..+.-..+++..... .+...-..++.+++-..
T Consensus 146 ~~~a~~~~~~~~~~~~-----~~~-~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~----~~~~~k~~~l~aLa~~~ 215 (324)
T PF11838_consen 146 VAEARELFKAWLDGND-----SPE-SSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS----TSPEEKRRLLSALACSP 215 (324)
T ss_dssp HHHHHHHHHHHHHTTT------TT-STS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT----STHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHhcCCc-----ccc-cccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc----CCHHHHHHHHHhhhccC
Confidence 5577888887622210 001 2445556666777778888877766666666655 35677788899998888
Q ss_pred CHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcH--HHHHHHHHH
Q 036589 102 LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL--DRMKELFIS 147 (176)
Q Consensus 102 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--~~a~~l~~~ 147 (176)
+.+...++++.....+..++.. ...++.++...+.. +.+.+.+.+
T Consensus 216 d~~~~~~~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 216 DPELLKRLLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp -HHHHHHHHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHHH
Confidence 9888888888888644223333 44555555534433 666665543
No 365
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=66.04 E-value=60 Score=25.08 Aligned_cols=87 Identities=15% Similarity=0.226 Sum_probs=58.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcC--CCCCchHHH--HHHHHHHHhccCHHHHHHHHHhccc-----CCCCccH-hHH
Q 036589 56 LIITKLGRAKMFDEMQQILHQLKHDT--RVIPEEIIF--CNVISFYGRARLLEHALQVFDEMPS-----FNVQRTV-KSL 125 (176)
Q Consensus 56 ~li~~~~~~g~~~~a~~~~~~m~~~~--g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~-~~~ 125 (176)
.++...-+.++.++|.++++++.+.. .-.|+.+.| ....+++...|+..++.+.+++..+ -++.|++ ..|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 34455556779999999999998762 235566666 4456777788999999999888776 6677744 446
Q ss_pred HHHHHHHH-hcCcHHHHH
Q 036589 126 NTLLNALL-TCGKLDRMK 142 (176)
Q Consensus 126 ~~ll~~~~-~~g~~~~a~ 142 (176)
+.+-.-|- +.|++....
T Consensus 160 Y~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYY 177 (380)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 66555444 356655443
No 366
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=65.35 E-value=77 Score=26.12 Aligned_cols=84 Identities=14% Similarity=0.096 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHH--HHHhccCHHHHHHHHHhcccCCCCccH------
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVIS--FYGRARLLEHALQVFDEMPSFNVQRTV------ 122 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~------ 122 (176)
...+..++++....|-......+.+.+... .+.+.. .-..+.. ...+.-..+-...+++-+....+.+..
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~-~~~~~e-a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa 417 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKNK-KITPLE-AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESA 417 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCCHHH-HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHH
Confidence 566777788888888777776666666655 343322 2222222 222233333333444433333444443
Q ss_pred -hHHHHHHHHHHhcC
Q 036589 123 -KSLNTLLNALLTCG 136 (176)
Q Consensus 123 -~~~~~ll~~~~~~g 136 (176)
.+|.++++-+|...
T Consensus 418 ~l~~~~lv~~~c~~~ 432 (574)
T smart00638 418 LLAYGSLVRRYCVNT 432 (574)
T ss_pred HHHHHHHHHHHhcCC
Confidence 44556666555544
No 367
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=64.97 E-value=38 Score=22.46 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKH 79 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 79 (176)
...+......+...+.+..+.+.+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444444444444444455544444443
No 368
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.83 E-value=49 Score=23.70 Aligned_cols=93 Identities=15% Similarity=0.107 Sum_probs=63.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCC---CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc-HhHHHHHHHHHHh
Q 036589 59 TKLGRAKMFDEMQQILHQLKHDTR---VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT-VKSLNTLLNALLT 134 (176)
Q Consensus 59 ~~~~~~g~~~~a~~~~~~m~~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~ 134 (176)
+-+.+.|++++|..-|......-. -+.-.+.|..-..++.+.+.++.|+.-..+..+.+ |+ .....-=..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 345578999999999999887611 11223566666778889999999999888888654 32 1111122346777
Q ss_pred cCcHHHHHHHHHHHHhccc
Q 036589 135 CGKLDRMKELFISFNLKAI 153 (176)
Q Consensus 135 ~g~~~~a~~l~~~m~~~~~ 153 (176)
..++++|++=|+...+..+
T Consensus 181 ~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhHHHHHHHHHHHHHhCc
Confidence 8889999988888876543
No 369
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=64.13 E-value=2 Score=23.38 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=13.6
Q ss_pred HHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589 104 EHALQVFDEMPSFNVQRTVKSLNTLLN 130 (176)
Q Consensus 104 ~~a~~~~~~m~~~~~~p~~~~~~~ll~ 130 (176)
++.+++|++|.+....|.+..||-.|.
T Consensus 9 ~~lI~vFK~~pSr~YD~~Tr~W~F~L~ 35 (55)
T PF07443_consen 9 EELIAVFKQMPSRNYDPKTRKWNFSLE 35 (55)
T ss_pred HHHHHHHHcCcccccCccceeeeeeHH
Confidence 344555555555555555555554443
No 370
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=64.08 E-value=22 Score=22.16 Aligned_cols=47 Identities=9% Similarity=0.115 Sum_probs=26.9
Q ss_pred HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHH
Q 036589 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 139 (176)
++..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44555555555566666666665555555555555555555555443
No 371
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=63.56 E-value=39 Score=26.28 Aligned_cols=78 Identities=8% Similarity=0.006 Sum_probs=52.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc
Q 036589 59 TKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137 (176)
Q Consensus 59 ~~~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 137 (176)
+.|.+.|.+++|...|..-... .| |.+++..-..+|.+..++..|+.=....... | ...+.+|.+++.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d----~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----D----KLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----h----HHHHHHHHHHHH
Confidence 4466788999999999877644 45 7888888888999999988887766665532 1 234566666554
Q ss_pred HHHHHHHHHH
Q 036589 138 LDRMKELFIS 147 (176)
Q Consensus 138 ~~~a~~l~~~ 147 (176)
..+++.-..+
T Consensus 174 AR~~Lg~~~E 183 (536)
T KOG4648|consen 174 ARESLGNNME 183 (536)
T ss_pred HHHHHhhHHH
Confidence 4444433333
No 372
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=63.40 E-value=82 Score=25.78 Aligned_cols=88 Identities=8% Similarity=0.150 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC------C----------CccHhHHHHHHHH
Q 036589 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN------V----------QRTVKSLNTLLNA 131 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~----------~p~~~~~~~ll~~ 131 (176)
++....++...+..|+..+......++.. -.|++..|...++++...+ + .++....-.|+++
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~a 267 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEY 267 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHH
Confidence 33444555444444776666666655553 4588989988888774321 1 1233334455555
Q ss_pred HHhcCcHHHHHHHHHHHHhccccccchH
Q 036589 132 LLTCGKLDRMKELFISFNLKAIAVLDGL 159 (176)
Q Consensus 132 ~~~~g~~~~a~~l~~~m~~~~~~~p~~~ 159 (176)
..+ |+.++|.++++++...|.. |...
T Consensus 268 i~~-~d~~~Al~~l~~L~~~g~~-~~~~ 293 (507)
T PRK06645 268 IIH-RETEKAINLINKLYGSSVN-LEIF 293 (507)
T ss_pred HHc-CCHHHHHHHHHHHHHcCCC-HHHH
Confidence 544 8999999999999999887 7643
No 373
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=63.24 E-value=65 Score=24.59 Aligned_cols=58 Identities=14% Similarity=0.264 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh
Q 036589 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT 134 (176)
Q Consensus 71 ~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 134 (176)
.++|+.+++. ++.|.-..|--+.-.+...=.+.+.+.+++.+.+ |..-|..|+..||.
T Consensus 263 ~EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 3567777766 7888888888777777777788888888888874 33336666666663
No 374
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=62.38 E-value=23 Score=20.28 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=25.2
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccC
Q 036589 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102 (176)
Q Consensus 63 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~ 102 (176)
..++.+.+.+++++..+. |+.|.......+.-+..+.|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~-g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQ-GYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHC-SSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777 677777666666666555443
No 375
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.25 E-value=95 Score=26.15 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-------------CccHhHHHHHHHHHHh
Q 036589 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-------------QRTVKSLNTLLNALLT 134 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------------~p~~~~~~~ll~~~~~ 134 (176)
++..+.+.+.....|+..+......++.. -.|++..++.++++....+- .++......+++++..
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 44444555444333777777777666664 45899999998876553331 1233344555665555
Q ss_pred cCcHHHHHHHHHHHHhccccccc
Q 036589 135 CGKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 135 ~g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
|+...+.+++++|.+.|.. |.
T Consensus 264 -~d~~~al~~l~~l~~~G~~-~~ 284 (618)
T PRK14951 264 -GDGRTVVETADELRLNGLS-AA 284 (618)
T ss_pred -CCHHHHHHHHHHHHHcCCC-HH
Confidence 8899999999999998886 44
No 376
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=62.03 E-value=61 Score=23.87 Aligned_cols=125 Identities=12% Similarity=0.063 Sum_probs=62.0
Q ss_pred HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHH
Q 036589 10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEII 89 (176)
Q Consensus 10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~ 89 (176)
...|..|++.-++..|...++.+ -+ ...+-.++++ |.+..+..-..++.+-.+.. ++.-+..-
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KI-iE--------------PIQSRCAiLR-ysklsd~qiL~Rl~~v~k~E-kv~yt~dg 196 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKI-IE--------------PIQSRCAILR-YSKLSDQQILKRLLEVAKAE-KVNYTDDG 196 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhh-hh--------------hHHhhhHhhh-hcccCHHHHHHHHHHHHHHh-CCCCCcch
Confidence 44566777777777776666665 22 1333333332 34444444444444444444 33333333
Q ss_pred HHHHHHHHHhccCHHHHHHHHHhcc-cCC-----------CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 90 FCNVISFYGRARLLEHALQVFDEMP-SFN-----------VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~-~~~-----------~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
..+++. -..|++.+|+.-++.-. ..| -.|.+.....++..|. .+++++|.+++.++=+.|..
T Consensus 197 Leaiif--ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgys 270 (333)
T KOG0991|consen 197 LEAIIF--TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYS 270 (333)
T ss_pred HHHhhh--hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCC
Confidence 333322 23566666655555433 122 1345555555555433 35666777777766666665
No 377
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=61.98 E-value=33 Score=26.13 Aligned_cols=58 Identities=9% Similarity=-0.008 Sum_probs=48.5
Q ss_pred HHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS 170 (176)
Q Consensus 107 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 170 (176)
.++++.|.+.++.|.-.+|--+.-.+...=.+..++.+++.+... ..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHH
Confidence 467888888999999999999999999999999999999998873 3337788887775
No 378
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=61.36 E-value=40 Score=21.49 Aligned_cols=62 Identities=19% Similarity=0.426 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHH-hcccCCCCccHhHHHHHH-HHHHh
Q 036589 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD-EMPSFNVQRTVKSLNTLL-NALLT 134 (176)
Q Consensus 67 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~ll-~~~~~ 134 (176)
+++...+.++=++. |..+..++|+++...+ ++..+++|+ +|.+..-..|..-||-++ ..+.+
T Consensus 6 ~e~I~~iVe~RrqE-GA~~~Dvs~SSv~sML-----LELGLRVYeaQ~erkes~Fnq~eFnK~lLE~v~k 69 (118)
T PRK13713 6 YEKINAIVEERRQE-GAREKDVSFSSVASML-----LELGLRVYEAQMERKESGFNQTEFNKLLLECVVK 69 (118)
T ss_pred HHHHHHHHHHHHHc-CCCccCccHHHHHHHH-----HHHhHHHHHHHHHhhcCcccHHHHHHHHHHHHHH
Confidence 45556677777777 9999999999999987 566678887 444444457788888544 44444
No 379
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=60.92 E-value=93 Score=25.56 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHH------------HHH--H
Q 036589 66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT------------LLN--A 131 (176)
Q Consensus 66 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~------------ll~--~ 131 (176)
..++....++.+....++.-+...+..+.++ ..|.+.++..+++++...|- +..+... ++. -
T Consensus 179 ~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~~~~~~ 254 (515)
T COG2812 179 DLEEIAKHLAAILDKEGINIEEDALSLIARA--AEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKLLSLLE 254 (515)
T ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHHH--cCCChhhHHHHHHHHHHccC--CcccHHHHHHHhCCCCHHHHHHHHH
Confidence 3456667777777666888888887766554 68889999999999987652 2222221 111 1
Q ss_pred HHhcCcHHHHHHHHHHHHhccccccchHHH
Q 036589 132 LLTCGKLDRMKELFISFNLKAIAVLDGLCS 161 (176)
Q Consensus 132 ~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~ 161 (176)
....++..++...++++.+.|.. |....-
T Consensus 255 ~i~~~d~~~~~~~~~~l~~~G~~-~~~~l~ 283 (515)
T COG2812 255 AILKGDAKEALRLINELIEEGKD-PEAFLE 283 (515)
T ss_pred HHHccCHHHHHHHHHHHHHhCcC-HHHHHH
Confidence 23468999999999999999987 665443
No 380
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=60.43 E-value=55 Score=26.17 Aligned_cols=101 Identities=8% Similarity=-0.112 Sum_probs=69.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc----cCC-CCc
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHD----TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP----SFN-VQR 120 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~-~~p 120 (176)
....+..+.+++.-.|+++.|.+.|+.-..- ..-.....+--+|-+.|.-..++++|+..+..=. +.+ ..-
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3457888889999999999999888764432 1112223334457788888888999988776422 111 123
Q ss_pred cHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 121 TVKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 121 ~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
-...+.+|-.+|...|..++|+.....-++
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 467788999999999999999877666543
No 381
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=60.28 E-value=18 Score=20.81 Aligned_cols=38 Identities=18% Similarity=0.037 Sum_probs=21.8
Q ss_pred hccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC
Q 036589 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136 (176)
Q Consensus 99 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 136 (176)
-.|+.+.+.+++++..+.|..|.....+.+..+..+-|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34566666666666665566666555555555555444
No 382
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=59.84 E-value=48 Score=21.94 Aligned_cols=91 Identities=13% Similarity=0.060 Sum_probs=53.6
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCC--CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc
Q 036589 60 KLGRAKMFDEMQQILHQLKHDTRV--IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137 (176)
Q Consensus 60 ~~~~~g~~~~a~~~~~~m~~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 137 (176)
.+...|+++.+...+++.... .. ......+......+...++.+.+...+..............+..+-..+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 566777777777777776442 21 123333334444456667777777777766643211135556666666677777
Q ss_pred HHHHHHHHHHHHhc
Q 036589 138 LDRMKELFISFNLK 151 (176)
Q Consensus 138 ~~~a~~l~~~m~~~ 151 (176)
++.|...+......
T Consensus 218 ~~~a~~~~~~~~~~ 231 (291)
T COG0457 218 YEEALEYYEKALEL 231 (291)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777666553
No 383
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.84 E-value=21 Score=28.14 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPF-RYNLLHYDLIITKLGRAKMFDEMQQILHQLK 78 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 78 (176)
+.--|++..+-.||+..|+++++.++.+... . -..+ .-.+.+|.-+.=+|...+++.+|.++|..+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~---l-~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKG---L-YTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccch---h-hccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888899999999999998544320 0 0011 1123356667888899999999999888755
No 384
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=59.48 E-value=17 Score=17.34 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHHHhccccccchHHHHHH
Q 036589 137 KLDRMKELFISFNLKAIAVLDGLCSNLK 164 (176)
Q Consensus 137 ~~~~a~~l~~~m~~~~~~~p~~~t~~~l 164 (176)
.+++|..+|++.+.. - |++.+|-..
T Consensus 2 E~dRAR~IyeR~v~~--h-p~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--H-PEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHh--C-CCchHHHHH
Confidence 578899999998764 2 777777543
No 385
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=59.33 E-value=24 Score=28.30 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=40.6
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130 (176)
Q Consensus 63 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 130 (176)
..|++.++.-.-.++.+ +.|...+|.-+--++....++++|+.+|..++-..-..|..+--+++-
T Consensus 474 sqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~l 538 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALAL 538 (549)
T ss_pred hcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 45777777666666663 456777777666666666777777777777765333445555544443
No 386
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=59.25 E-value=8.2 Score=30.50 Aligned_cols=114 Identities=13% Similarity=-0.012 Sum_probs=64.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCC---CCchHHHHHHHHHHHhccCHHHHHHHHHhcc--cCCCCc---cHhHHHHHHH
Q 036589 59 TKLGRAKMFDEMQQILHQLKHDTRV---IPEEIIFCNVISFYGRARLLEHALQVFDEMP--SFNVQR---TVKSLNTLLN 130 (176)
Q Consensus 59 ~~~~~~g~~~~a~~~~~~m~~~~g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~p---~~~~~~~ll~ 130 (176)
.-+|+.|+......+|+...+. |. ..-..+|+.|-++|.-.+++++|++....=. ..-+-- ...+-..|-+
T Consensus 25 ERLck~gdcraGv~ff~aA~qv-GTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQV-GTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHh-cchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578899999999999998887 52 3334566777788888888888887764211 111000 0122223334
Q ss_pred HHHhcCcHHHHHHHHHHHH----hccccccchHHHHHHHHHhhcccc
Q 036589 131 ALLTCGKLDRMKELFISFN----LKAIAVLDGLCSNLKIIMNDSQVR 173 (176)
Q Consensus 131 ~~~~~g~~~~a~~l~~~m~----~~~~~~p~~~t~~~li~~~~~~g~ 173 (176)
.+--.|.+++|+-.-.+-. +.|-..-....+-.|-+.|...|+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence 4444556667766665532 222211233444445555555554
No 387
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.14 E-value=1e+02 Score=26.01 Aligned_cols=89 Identities=12% Similarity=-0.008 Sum_probs=60.5
Q ss_pred cCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHH
Q 036589 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143 (176)
Q Consensus 64 ~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 143 (176)
.|+...|.+.+.........+.++ ..-.|.+.+.+.|...+|-.++.+-.... ...+.++-.+-+++....++++|++
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v-~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDV-PLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcc-cHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 367777777777666542222233 33346677777787788888777666433 3455667778889999999999999
Q ss_pred HHHHHHhcccc
Q 036589 144 LFISFNLKAIA 154 (176)
Q Consensus 144 l~~~m~~~~~~ 154 (176)
-|++..+....
T Consensus 698 ~~~~a~~~~~~ 708 (886)
T KOG4507|consen 698 AFRQALKLTTK 708 (886)
T ss_pred HHHHHHhcCCC
Confidence 99987765443
No 388
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=58.78 E-value=82 Score=28.56 Aligned_cols=124 Identities=17% Similarity=0.242 Sum_probs=64.4
Q ss_pred HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHH--HHHHHHHHHHhcC--ChHHHHHHHHHHhhc----CCC
Q 036589 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLL--HYDLIITKLGRAK--MFDEMQQILHQLKHD----TRV 83 (176)
Q Consensus 12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~li~~~~~~g--~~~~a~~~~~~m~~~----~g~ 83 (176)
++-+-..+.|+.+-+-+++++ +.. ......++.|.+ -|...+.-+.+.| .+++++.+.++-... .=.
T Consensus 857 l~VAq~SqkDPkEyLP~L~el-~~m----~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly 931 (1265)
T KOG1920|consen 857 LLVAQKSQKDPKEYLPFLNEL-KKM----ETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALY 931 (1265)
T ss_pred HHHHHHhccChHHHHHHHHHH-hhc----hhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhhee
Confidence 344555677888888777777 221 001123333333 3666666666666 566666554443211 014
Q ss_pred CCchHHHHHHHHHHH----hccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589 84 IPEEIIFCNVISFYG----RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149 (176)
Q Consensus 84 ~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~ 149 (176)
+|+...+..+..+|+ +.+.+++|--.|+..-. ..--+.+|..+|+|.+|+.+-..|.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhc
Confidence 566666666554443 34455555555544331 1223455566666666666655543
No 389
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.78 E-value=38 Score=20.43 Aligned_cols=62 Identities=13% Similarity=0.015 Sum_probs=40.0
Q ss_pred HHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVR 173 (176)
Q Consensus 105 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 173 (176)
++.++++.+.+.|+ .+..-.+.+-.+-...|+.+.|.+++..+. .|.. .|...++++-..|+
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~-----aF~~Fl~aLreT~~ 81 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEG-----WFSKFLQALRETEH 81 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc-----HHHHHHHHHHHcCc
Confidence 35567777776663 344444444444446688888888888888 6655 67777777766554
No 390
>PRK09462 fur ferric uptake regulator; Provisional
Probab=58.55 E-value=50 Score=21.76 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=28.5
Q ss_pred HHHHHHhc-CChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCH
Q 036589 57 IITKLGRA-KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103 (176)
Q Consensus 57 li~~~~~~-g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~ 103 (176)
++..+... +..-.|.++++.+.+. +...+..|.-.-|+.+.+.|-+
T Consensus 22 Il~~l~~~~~~h~sa~eI~~~l~~~-~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 22 ILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCCE
Confidence 45555543 3466777777777776 5556666665566666666654
No 391
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.41 E-value=73 Score=23.58 Aligned_cols=46 Identities=7% Similarity=-0.049 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhc---cccccchHHHHHHHHHhhcc
Q 036589 125 LNTLLNALLTCGKLDRMKELFISFNLK---AIAVLDGLCSNLKIIMNDSQ 171 (176)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~l~~~m~~~---~~~~p~~~t~~~li~~~~~~ 171 (176)
|-..|-.+....++..|.+++++--+. .-+ -|..+...||.+|...
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s-ed~r~lenLL~ayd~g 241 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS-EDSRSLENLLTAYDEG 241 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccCh-HHHHHHHHHHHHhccC
Confidence 556666677778888999998884332 112 3677888888888643
No 392
>PRK11906 transcriptional regulator; Provisional
Probab=57.07 E-value=1e+02 Score=24.85 Aligned_cols=96 Identities=11% Similarity=0.117 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC-CCccHhHHHHH
Q 036589 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN-VQRTVKSLNTL 128 (176)
Q Consensus 50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l 128 (176)
|......+..+..-.++++.|...|++...-..-.++...|..++.+ -+|+.++|.+.+++..+.. .+.-....-..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~--~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~ 414 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF--HNEKIEEARICIDKSLQLEPRRRKAVVIKEC 414 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH--HcCCHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 55555556666666778888888888888653333344444444444 5899999999999966442 12222333344
Q ss_pred HHHHHhcCcHHHHHHHHHHH
Q 036589 129 LNALLTCGKLDRMKELFISF 148 (176)
Q Consensus 129 l~~~~~~g~~~~a~~l~~~m 148 (176)
++.|+. ..++.|.+++-+-
T Consensus 415 ~~~~~~-~~~~~~~~~~~~~ 433 (458)
T PRK11906 415 VDMYVP-NPLKNNIKLYYKE 433 (458)
T ss_pred HHHHcC-CchhhhHHHHhhc
Confidence 445555 4577888887653
No 393
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=56.82 E-value=82 Score=23.65 Aligned_cols=85 Identities=12% Similarity=0.112 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc-------------HhHHHHHHHHHHhc
Q 036589 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT-------------VKSLNTLLNALLTC 135 (176)
Q Consensus 69 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------------~~~~~~ll~~~~~~ 135 (176)
+...++....+..|+..+......++... .|++.++...++.....+-..+ ......++++. ..
T Consensus 188 ~~~~~l~~~~~~~~~~~~~~al~~l~~~~--~gdlr~l~~~l~~~~~~~~~It~~~v~~~~~~~~~~~~i~~l~~ai-~~ 264 (337)
T PRK12402 188 ELVDVLESIAEAEGVDYDDDGLELIAYYA--GGDLRKAILTLQTAALAAGEITMEAAYEALGDVGTDEVIESLLDAA-EA 264 (337)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCCHHHHHHHHHHH-Hc
Confidence 44555555544447777777777666654 6888888887776542111111 22333455544 55
Q ss_pred CcHHHHHHHHHHHH-hccccccc
Q 036589 136 GKLDRMKELFISFN-LKAIAVLD 157 (176)
Q Consensus 136 g~~~~a~~l~~~m~-~~~~~~p~ 157 (176)
|++++|..++.+|. +.|.. |.
T Consensus 265 ~~~~~a~~~l~~l~~~~g~~-~~ 286 (337)
T PRK12402 265 GDFTDARKTLDDLLIDEGLS-GG 286 (337)
T ss_pred CCHHHHHHHHHHHHHHcCCC-HH
Confidence 78999999999996 67886 54
No 394
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.68 E-value=1.1e+02 Score=25.05 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc------------cHhHHHHHHHHHHhc
Q 036589 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR------------TVKSLNTLLNALLTC 135 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------------~~~~~~~ll~~~~~~ 135 (176)
++....+....+..|+..+......++... .|++..+...++.+...+-.. .......+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 334444544443337776666666665553 588888888888765433111 122244556665 55
Q ss_pred CcHHHHHHHHHHHHhccccccc
Q 036589 136 GKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 136 g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
++.++|..+++++...|.. |.
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~-~~ 275 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFA-AR 275 (504)
T ss_pred CCHHHHHHHHHHHHHcCCC-HH
Confidence 8999999999999999876 55
No 395
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=56.51 E-value=62 Score=24.74 Aligned_cols=16 Identities=13% Similarity=-0.288 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhccccC
Q 036589 159 LCSNLKIIMNDSQVRV 174 (176)
Q Consensus 159 ~t~~~li~~~~~~g~~ 174 (176)
.+|.-|+.++|+.|+.
T Consensus 322 K~yaPLL~af~s~g~s 337 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQS 337 (412)
T ss_pred HhhhHHHHHHhcCChH
Confidence 3566666666666653
No 396
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.51 E-value=67 Score=22.53 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcccCCCCccH--hH-----HHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcc
Q 036589 103 LEHALQVFDEMPSFNVQRTV--KS-----LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQ 171 (176)
Q Consensus 103 ~~~a~~~~~~m~~~~~~p~~--~~-----~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~ 171 (176)
++-|+.+|+.+.+.--.|.. .. --..+-.|.+.|.+++|.+++++..+. |+......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d----~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD----PESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----CCchhHHHHHHHHHHc
Confidence 67889999988854433311 11 223456788999999999999998773 5555555444444433
No 397
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.41 E-value=43 Score=22.19 Aligned_cols=66 Identities=9% Similarity=0.034 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHhccC---HHHHHHHHHhcccCC-CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589 86 EEIIFCNVISFYGRARL---LEHALQVFDEMPSFN-VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 86 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~ 151 (176)
+..+.-.+..++.+..+ ..+.+.+|+++.+.. -.......--|.-++.+.++++++.++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 33333334444444433 334445555544311 1112222333334445555555555555555443
No 398
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.40 E-value=80 Score=23.40 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcC---CCCCc-hHHHHHHHHHHHhccCHHHHHHHHHh---cccCCCCccHhHH
Q 036589 53 HYDLIITKLGRAKMFDEMQQILHQLKHDT---RVIPE-EIIFCNVISFYGRARLLEHALQVFDE---MPSFNVQRTVKSL 125 (176)
Q Consensus 53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~---m~~~~~~p~~~~~ 125 (176)
-|..+-+.+.+...+.+|-..+.+-.... .--++ -..|-..|-.|.-..++..|..+++. ...+.-+-+..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445555555556555444333322110 00111 12344456666667789999999998 4444444577888
Q ss_pred HHHHHHHHhcCcHHHHHHHH
Q 036589 126 NTLLNALLTCGKLDRMKELF 145 (176)
Q Consensus 126 ~~ll~~~~~~g~~~~a~~l~ 145 (176)
..||.+|- .|+.+++..++
T Consensus 232 enLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHH
Confidence 88888875 57777776554
No 399
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=56.33 E-value=24 Score=22.24 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=19.3
Q ss_pred HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC
Q 036589 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 136 (176)
++......+..-.|.++++.+.+.+...+..|.---|+.+...|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 44444444444455555555554444444444444444444433
No 400
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=56.28 E-value=86 Score=24.28 Aligned_cols=67 Identities=9% Similarity=0.089 Sum_probs=48.5
Q ss_pred HHHHHHhccCHHHHHHHHHhccc---CCCCccHhHHH--HHHHHHHhcCcHHHHHHHHHHHHh-----ccccccchHH
Q 036589 93 VISFYGRARLLEHALQVFDEMPS---FNVQRTVKSLN--TLLNALLTCGKLDRMKELFISFNL-----KAIAVLDGLC 160 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~--~ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~p~~~t 160 (176)
++...-+.++.++|++.++++.+ .--.|+.+.|- .+...+...|+.+++.+++++..+ .+++ |++.+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~-~~Vh~ 157 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVT-SNVHS 157 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCC-hhhhh
Confidence 45555667789999999998873 22355665554 455666778999999999999887 6887 75443
No 401
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=56.17 E-value=31 Score=18.53 Aligned_cols=20 Identities=5% Similarity=0.094 Sum_probs=9.6
Q ss_pred HHHhcCcHHHHHHHHHHHHh
Q 036589 131 ALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 131 ~~~~~g~~~~a~~l~~~m~~ 150 (176)
++.+.|++++|.+..+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 44455555555555555444
No 402
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=56.04 E-value=59 Score=25.09 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=43.4
Q ss_pred HHHHHHHhccC---HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHH
Q 036589 92 NVISFYGRARL---LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCS 161 (176)
Q Consensus 92 ~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~ 161 (176)
.+++.|.+.++ +-+|..+++...... +.|...--.++..|...|-.+.|.++|..+.-+.+. -|+..|
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ-~DTL~h 255 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQ-LDTLGH 255 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHH-HHHhHH
Confidence 45555555555 456666777665432 345555556678888889889898888887655555 444444
No 403
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=54.81 E-value=49 Score=20.45 Aligned_cols=26 Identities=31% Similarity=0.174 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589 55 DLIITKLGRAKMFDEMQQILHQLKHD 80 (176)
Q Consensus 55 ~~li~~~~~~g~~~~a~~~~~~m~~~ 80 (176)
..++..|...+++++|.+.+.++...
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~ 31 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLP 31 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCC
Confidence 34667777788888888888877654
No 404
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=54.74 E-value=35 Score=20.87 Aligned_cols=29 Identities=28% Similarity=0.171 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589 123 KSLNTLLNALLTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 123 ~~~~~ll~~~~~~g~~~~a~~l~~~m~~~ 151 (176)
.|++.|+.++.+.|.-..|..+-+.+.+.
T Consensus 65 At~~~L~~aL~~~~~~~~Ae~I~~~l~~~ 93 (96)
T cd08315 65 ASVNTLLDALEAIGLRLAKESIQDELISS 93 (96)
T ss_pred cHHHHHHHHHHHcccccHHHHHHHHHHHc
Confidence 34455555555555444444444444433
No 405
>PF15469 Sec5: Exocyst complex component Sec5
Probab=54.44 E-value=67 Score=21.96 Aligned_cols=29 Identities=7% Similarity=-0.006 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589 52 LHYDLIITKLGRAKMFDEMQQILHQLKHD 80 (176)
Q Consensus 52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 80 (176)
...-.-|.-|.+.|+++.+..-|...+..
T Consensus 87 F~LP~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 87 FNLPSNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHhHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 33334455556666666666666665544
No 406
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=54.37 E-value=61 Score=24.99 Aligned_cols=34 Identities=3% Similarity=-0.091 Sum_probs=17.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC 91 (176)
Q Consensus 57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~ 91 (176)
++..|...|-.+.|...|+.+.-+ .++-|...|.
T Consensus 223 LvrlY~~LG~~~~A~~~~~~L~iK-~IQ~DTL~h~ 256 (365)
T PF09797_consen 223 LVRLYSLLGAGSLALEHYESLDIK-NIQLDTLGHL 256 (365)
T ss_pred HHHHHHHcCCHHHHHHHHHhcChH-HHHHHHhHHH
Confidence 555555556666666555555544 3444444333
No 407
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=54.20 E-value=51 Score=21.04 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=14.4
Q ss_pred HHHHHHhccCHHHHHHHHHhcccCC
Q 036589 93 VISFYGRARLLEHALQVFDEMPSFN 117 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~~~ 117 (176)
+|+.+.+|...++|+++++-|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4445555666666666666665544
No 408
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.00 E-value=57 Score=20.97 Aligned_cols=44 Identities=9% Similarity=0.202 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhccCHHHHHHHHHh
Q 036589 68 DEMQQILHQLKHDTRV-IPEEIIFCNVISFYGRARLLEHALQVFDE 112 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 112 (176)
+.+..+|+.|... |+ .--...|......+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4566677777766 43 33444556666666777777777777653
No 409
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.85 E-value=53 Score=20.54 Aligned_cols=27 Identities=15% Similarity=0.416 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhccc
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPS 115 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 115 (176)
-|..|+..|...|..++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467788888888888888888887775
No 410
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=53.73 E-value=69 Score=21.89 Aligned_cols=123 Identities=12% Similarity=0.023 Sum_probs=80.5
Q ss_pred CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036589 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR 82 (176)
Q Consensus 3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g 82 (176)
.|++..+..+++.+.+.|++..-.+++.-- +-+|.......+-.+. +....+.++=-+|.++.+
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~L~qllq~~--------------Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQLHQLLQYH--------------VIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhc--------------ccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh
Confidence 356668899999999999988887776553 1224444333333332 233445555455554411
Q ss_pred CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
..+..+++.+...|++-+|.++.++... .+......++.+..+.++...=..+|+-..+
T Consensus 90 -----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 -----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred -----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1346678889999999999999988642 3444456788888888887766666665544
No 411
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=53.68 E-value=32 Score=26.92 Aligned_cols=104 Identities=12% Similarity=0.052 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI 88 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~ 88 (176)
+-.|-..|.+..|+++|+-+.... .+-..+.+.++.+.+.-..+..-|--++-+.|+...|++..++..+-.=..-|..
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA-~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKA-AELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhH-HHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 445566777777777765554433 1111000111122222223333455666778888888888777655411223444
Q ss_pred HH----HHHHHHHHhccCHHHHHHHHHhc
Q 036589 89 IF----CNVISFYGRARLLEHALQVFDEM 113 (176)
Q Consensus 89 ~~----~~li~~~~~~g~~~~a~~~~~~m 113 (176)
++ ..+.+-|...|+.+.|+.-|++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 44 45667788889988888777653
No 412
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.46 E-value=98 Score=23.56 Aligned_cols=106 Identities=9% Similarity=0.077 Sum_probs=55.4
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc----cCCCCccH
Q 036589 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP----SFNVQRTV 122 (176)
Q Consensus 47 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~p~~ 122 (176)
++-|..-+|+|+.- +..++++.-+-.++..+..|-.-....+-.+...|+..++.+.+.+...+.. +.|.+.|.
T Consensus 77 ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 77 IKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred eehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh
Confidence 34455556666542 1122333323333444443444556677789999999999998888776544 35555444
Q ss_pred hHHHHHH-HHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 123 KSLNTLL-NALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 123 ~~~~~ll-~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
..--+=+ -.|....-+++-++..+.|.+.|-.
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 2211111 1122222245555666666665544
No 413
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=52.53 E-value=56 Score=20.47 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=39.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH
Q 036589 59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126 (176)
Q Consensus 59 ~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 126 (176)
..+...|++++|..+.+.+ ..||...|-+|-.. +.|..+++..-+..|.+.| .|-...|-
T Consensus 47 sSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCC-----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4455677788777665544 46788888776554 6777777777777777666 45444443
No 414
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=52.06 E-value=1.2e+02 Score=25.83 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=46.2
Q ss_pred CCCCCcHHHHHHHHHHHHhcCC----hHHHHHHHHHHhhc---CCCCCchH--HH-HHHHHHHHhccCHH---HHHHHHH
Q 036589 45 KPFRYNLLHYDLIITKLGRAKM----FDEMQQILHQLKHD---TRVIPEEI--IF-CNVISFYGRARLLE---HALQVFD 111 (176)
Q Consensus 45 ~~~~~~~~~y~~li~~~~~~g~----~~~a~~~~~~m~~~---~g~~~~~~--~~-~~li~~~~~~g~~~---~a~~~~~ 111 (176)
.|++-++..|..|+.++-...+ ++++.++++-+++- .|+.++.. .| ..+.+-|+..|+.+ .|...+.
T Consensus 211 dgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L~ 290 (677)
T PF05664_consen 211 DGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQLQ 290 (677)
T ss_pred cCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6889999999999998876432 46666666666543 45554332 22 45788899999754 4555555
Q ss_pred hcc
Q 036589 112 EMP 114 (176)
Q Consensus 112 ~m~ 114 (176)
+..
T Consensus 291 ev~ 293 (677)
T PF05664_consen 291 EVA 293 (677)
T ss_pred HHH
Confidence 544
No 415
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=51.98 E-value=74 Score=21.71 Aligned_cols=30 Identities=10% Similarity=0.172 Sum_probs=19.6
Q ss_pred HHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589 131 ALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165 (176)
Q Consensus 131 ~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li 165 (176)
..|..|+.++|.++.+.+... +...|..+-
T Consensus 127 ~~~~~~~~~~v~~~vr~yg~~-----Sg~iW~~~~ 156 (164)
T PF07840_consen 127 EACEKGDYDQVPDVVRQYGIE-----SGEIWQSMR 156 (164)
T ss_dssp HHHHCT-CCGHHHHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 457778889998888876552 445666554
No 416
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.40 E-value=84 Score=24.58 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=9.5
Q ss_pred hcCChHHHHHHHHHHhhc
Q 036589 63 RAKMFDEMQQILHQLKHD 80 (176)
Q Consensus 63 ~~g~~~~a~~~~~~m~~~ 80 (176)
+.+++..|.++++.+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 445555555555555543
No 417
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.64 E-value=1.7e+02 Score=25.44 Aligned_cols=105 Identities=13% Similarity=0.036 Sum_probs=70.8
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN 92 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~ 92 (176)
++.+.+.+.+++|+.+-+.- .... +.+ .....+...|..+...|++++|-...-.|... +...|--
T Consensus 363 i~Wll~~k~yeeAl~~~k~~-~~~~-------~~~-~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~ 428 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKAS-IGNE-------ERF-VIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWEL 428 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhc-cCCc-------ccc-chHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHH
Confidence 67888899999999997776 2220 111 13556788899999999999998888888876 4666666
Q ss_pred HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh
Q 036589 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT 134 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 134 (176)
.+..+...++..... .-++...-..+...|..+|..|..
T Consensus 429 ~V~~f~e~~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 429 WVFKFAELDQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHhccccccchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 666666666554433 333322223456678888877776
No 418
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=50.31 E-value=72 Score=22.92 Aligned_cols=83 Identities=8% Similarity=0.140 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHhhcCCCC-------CchHHHHHHHHHHHhccC---------HHHHHHHHHhcccCCCCc-cHhHHHHH
Q 036589 66 MFDEMQQILHQLKHDTRVI-------PEEIIFCNVISFYGRARL---------LEHALQVFDEMPSFNVQR-TVKSLNTL 128 (176)
Q Consensus 66 ~~~~a~~~~~~m~~~~g~~-------~~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~~~~p-~~~~~~~l 128 (176)
..+.|..++++|--+ .++ -...-|..+..+|.+.|= .+.-.++++..++.|++- -++.|+++
T Consensus 136 ~vetAiaml~dmG~~-SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssi 214 (236)
T TIGR03581 136 PIETAIAMLKDMGGS-SVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSI 214 (236)
T ss_pred eHHHHHHHHHHcCCC-eeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceec
Confidence 367888888888766 221 244677889999999874 466677778778888643 45778999
Q ss_pred HHHHHhcCcHHHHHHHHHHHH
Q 036589 129 LNALLTCGKLDRMKELFISFN 149 (176)
Q Consensus 129 l~~~~~~g~~~~a~~l~~~m~ 149 (176)
|+--...-+.+++.++|..++
T Consensus 215 IDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 215 IDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccccCCCCHHHHHHHHHHhh
Confidence 988888888999999988765
No 419
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=50.17 E-value=1.4e+02 Score=24.47 Aligned_cols=65 Identities=6% Similarity=0.123 Sum_probs=28.7
Q ss_pred CCchHHH-HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH--hcCcHHHHHHHHHHHH
Q 036589 84 IPEEIIF-CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL--TCGKLDRMKELFISFN 149 (176)
Q Consensus 84 ~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~g~~~~a~~l~~~m~ 149 (176)
.|+..|+ +.+++.+-+.|-...|..+|..+.... +|+...|--+|..=. ...++.-+.++++.|.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 3444444 345555555555555555555554322 334444444442211 1122444555555543
No 420
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.99 E-value=90 Score=22.11 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=64.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH-----HHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH
Q 036589 59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC-----NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133 (176)
Q Consensus 59 ~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 133 (176)
..+...+++++|+..+++.... |....+. .|.+.....|.+++|+..++.....+. .......--+.+.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 5566789999999999988754 2222333 355677788999999999998886432 2222333447788
Q ss_pred hcCcHHHHHHHHHHHHhcccc
Q 036589 134 TCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 134 ~~g~~~~a~~l~~~m~~~~~~ 154 (176)
..|+-++|..-|..-.+.+..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 999999999999998877543
No 421
>PRK09462 fur ferric uptake regulator; Provisional
Probab=49.03 E-value=75 Score=20.92 Aligned_cols=62 Identities=10% Similarity=0.112 Sum_probs=35.3
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHhc-cCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHH
Q 036589 76 QLKHDTRVIPEEIIFCNVISFYGRA-RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139 (176)
Q Consensus 76 ~m~~~~g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 139 (176)
.+++. |++++..=.. ++..+... +..-.|.++++.+.+.+...+..|.---|+.+...|-+.
T Consensus 7 ~l~~~-glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKA-GLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHc-CCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34444 6655544333 44555443 456677777777776665556666555566666655543
No 422
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.03 E-value=55 Score=25.89 Aligned_cols=100 Identities=9% Similarity=0.003 Sum_probs=61.7
Q ss_pred HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC-----cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----
Q 036589 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY-----NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR---- 82 (176)
Q Consensus 12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g---- 82 (176)
++.++....++.+-++..+.. .+....-+ .-+-.| .-.+.-.|++..+-.|++..|.++++.+.-...
T Consensus 81 vL~sLv~kS~I~e~l~~~~~~-~~~~~~~~--~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~ 157 (404)
T PF10255_consen 81 VLYSLVDKSQINEQLEAEKRG-EDPDEVAG--EYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYT 157 (404)
T ss_pred HHHHHHHHHhHHHHHHHhhcc-CCchhhhc--ccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhc
Confidence 356666667777766666653 11100000 001111 112344566777889999999999888754311
Q ss_pred --CCCchHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589 83 --VIPEEIIFCNVISFYGRARLLEHALQVFDEMP 114 (176)
Q Consensus 83 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 114 (176)
..-...+|-.+--+|.-.+++.+|++.|....
T Consensus 158 ~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 158 KVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344566678888899999999999998764
No 423
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=48.90 E-value=69 Score=20.45 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=28.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589 127 TLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165 (176)
Q Consensus 127 ~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li 165 (176)
++|+.+.++.-.++|+++++-|.+.|-. +...-+.|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GEI--t~e~A~eLr 102 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGEI--TPEEAKELR 102 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 4677888999999999999999988775 444444333
No 424
>PRK09857 putative transposase; Provisional
Probab=48.63 E-value=1.1e+02 Score=22.89 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=47.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccc
Q 036589 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
+..++......|+.++-.++++.+.+. +.......-++..-+...|.-+++.++-++|...|+. ++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~-~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP-LA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HH
Confidence 556776667778877777777776644 2233334446667777778888899999999999987 55
No 425
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=48.56 E-value=1.6e+02 Score=24.69 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-------------CccHhHHHHHHHHHHhc
Q 036589 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-------------QRTVKSLNTLLNALLTC 135 (176)
Q Consensus 69 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------------~p~~~~~~~ll~~~~~~ 135 (176)
+..+.+.+..+..|+..+......++... .|++..+...+++....+- ..+....-.++.+. ..
T Consensus 195 el~~~L~~i~~kegi~i~~eAl~lIa~~a--~Gdlr~al~~Ldkli~~g~g~It~e~V~~llg~~~~~~if~L~~ai-~~ 271 (598)
T PRK09111 195 VLAAHLSRIAAKEGVEVEDEALALIARAA--EGSVRDGLSLLDQAIAHGAGEVTAEAVRDMLGLADRARVIDLFEAL-MR 271 (598)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-Hc
Confidence 34444444443336666666665555543 5788888888877643320 11222223455543 45
Q ss_pred CcHHHHHHHHHHHHhccccccc
Q 036589 136 GKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 136 g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
|+.++|..+++++...|.. |-
T Consensus 272 gd~~~Al~~l~~l~~~G~~-p~ 292 (598)
T PRK09111 272 GDVAAALAEFRAQYDAGAD-PV 292 (598)
T ss_pred CCHHHHHHHHHHHHHcCCC-HH
Confidence 8999999999999988887 65
No 426
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=48.52 E-value=48 Score=23.22 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcH
Q 036589 87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138 (176)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 138 (176)
...+..++..|...|+.+..+++.-.+. |+.--.+.++..|-++|-+
T Consensus 22 p~v~k~lv~~y~~~~~~~~lE~lI~~LD-----~~~LDidq~i~lC~~~~Ly 68 (196)
T PF12816_consen 22 PEVFKALVEHYASKGRLERLEQLILHLD-----PSSLDIDQVIKLCKKHGLY 68 (196)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCC-----HHhcCHHHHHHHHHHCCCC
Confidence 3555666666666666666666665555 3333344444444444443
No 427
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.51 E-value=1.3e+02 Score=23.35 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhc----ccCCCCccHhHHHHHHH
Q 036589 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM----PSFNVQRTVKSLNTLLN 130 (176)
Q Consensus 67 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~ 130 (176)
+++..+..++..+..|-.--...+-.....||+.|+-+.|++.+... .+.|.+.|+..+.+=+.
T Consensus 84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlg 151 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLG 151 (393)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Confidence 44444444444444343333455666788999999999998877654 35677777766554443
No 428
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.45 E-value=93 Score=21.84 Aligned_cols=67 Identities=13% Similarity=0.211 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhhcCCCCCch-------HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc
Q 036589 67 FDEMQQILHQLKHDTRVIPEE-------IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137 (176)
Q Consensus 67 ~~~a~~~~~~m~~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 137 (176)
++.|..+|+.+.+.. -.|.. ..--..+-.|.+.|.+++|.++++..-+ .|+....-.-|....+..+
T Consensus 85 LESAl~v~~~I~~E~-~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEF-SLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 467888999998872 22211 1112356788999999999999999886 3555554555555544433
No 429
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.37 E-value=1.6e+02 Score=24.62 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC--------------CccHhHHHHHHHHHHh
Q 036589 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV--------------QRTVKSLNTLLNALLT 134 (176)
Q Consensus 69 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------~p~~~~~~~ll~~~~~ 134 (176)
+..+.+.+..+..|+..+......++. ...|++..++..++++....- ..+......++. ...
T Consensus 181 ~i~~~L~~i~~~egi~i~~~al~~Ia~--~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~llg~~~~~~i~~lv~-al~ 257 (584)
T PRK14952 181 TMRALIARICEQEGVVVDDAVYPLVIR--AGGGSPRDTLSVLDQLLAGAADTHVTYQRALGLLGATDVALIDDAVD-ALA 257 (584)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHhccCCCCcCHHHHHHHHCCCCHHHHHHHHH-HHH
Confidence 334444444433366666666655544 345889999999988764320 112222334445 345
Q ss_pred cCcHHHHHHHHHHHHhccccccc
Q 036589 135 CGKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 135 ~g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
.++...++++++++.+.|.. |.
T Consensus 258 ~~d~~~al~~l~~l~~~g~d-~~ 279 (584)
T PRK14952 258 ADDAAALFGAIESVIDAGHD-PR 279 (584)
T ss_pred cCCHHHHHHHHHHHHHcCCC-HH
Confidence 68899999999999888776 54
No 430
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=47.95 E-value=22 Score=19.94 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=18.7
Q ss_pred cCChHHHHHHHHHHhhcCCCCCch
Q 036589 64 AKMFDEMQQILHQLKHDTRVIPEE 87 (176)
Q Consensus 64 ~g~~~~a~~~~~~m~~~~g~~~~~ 87 (176)
.-+++.|...|.+++....+.|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 457999999999999874466654
No 431
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=47.87 E-value=76 Score=23.40 Aligned_cols=41 Identities=24% Similarity=0.223 Sum_probs=24.4
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589 49 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC 91 (176)
Q Consensus 49 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~ 91 (176)
|.+...-.|+..|.+ +++++|.+++.++-+. |+.|....-+
T Consensus 237 PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~l-gysp~Dii~~ 277 (333)
T KOG0991|consen 237 PHPLLVKKMLQACLK-RNIDEALKILAELWKL-GYSPEDIITT 277 (333)
T ss_pred CChHHHHHHHHHHHh-ccHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 445555556655543 4477777777777766 6666654433
No 432
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=47.57 E-value=53 Score=21.81 Aligned_cols=45 Identities=11% Similarity=0.009 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHh
Q 036589 122 VKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMN 168 (176)
Q Consensus 122 ~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~ 168 (176)
+.+...++. +-+.|-+.++..++++|.+.|+. .+...|+-++.-.
T Consensus 110 ~GtlGvL~~-ak~kgLisk~Kpild~LI~~GF~-iS~~~~eeiL~~~ 154 (157)
T COG2405 110 TGTLGVLAL-AKSKGLISKDKPILDELIEKGFR-ISRSILEEILRKL 154 (157)
T ss_pred eehhHHHHH-HHHcCcccchHHHHHHHHHhcCc-ccHHHHHHHHHHh
Confidence 344444443 34568888888999999999998 8888888776543
No 433
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=47.53 E-value=62 Score=19.50 Aligned_cols=42 Identities=10% Similarity=0.107 Sum_probs=21.2
Q ss_pred HHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP 114 (176)
Q Consensus 72 ~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 114 (176)
++|+-.... |+..|...|-.+++.+.-.=..+...++++.|-
T Consensus 29 EL~ELa~~A-Gv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLA-GVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHh-CCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444 555555555555555444444455555555544
No 434
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=46.83 E-value=38 Score=25.89 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=9.7
Q ss_pred HHHHHHhccCHHHHHHHHHh
Q 036589 93 VISFYGRARLLEHALQVFDE 112 (176)
Q Consensus 93 li~~~~~~g~~~~a~~~~~~ 112 (176)
|++.|.+.|.+++|.++...
T Consensus 112 Lm~~ci~~g~y~eALel~~~ 131 (338)
T PF04124_consen 112 LMDTCIRNGNYSEALELSAH 131 (338)
T ss_pred HHHHHHhcccHhhHHHHHHH
Confidence 44455555555555444443
No 435
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=46.13 E-value=1.3e+02 Score=22.79 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=41.4
Q ss_pred HHHHHhccCHHHHHHHHHh-cccCCCCccHhHHHH-HHHHHHhcCcHHHHHHHHHHHHhc
Q 036589 94 ISFYGRARLLEHALQVFDE-MPSFNVQRTVKSLNT-LLNALLTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 94 i~~~~~~g~~~~a~~~~~~-m~~~~~~p~~~~~~~-ll~~~~~~g~~~~a~~l~~~m~~~ 151 (176)
...+.+.|.++.|+..++. +....-..+...+.. +.+.|...|+.+-|..++..+.+.
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556778889999999997 554443444444443 347778899999999999888653
No 436
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.94 E-value=1.3e+02 Score=22.88 Aligned_cols=93 Identities=10% Similarity=0.118 Sum_probs=55.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH-------HHHHHHHhccCHHHHHHHHHh----cccCCCCccHhHH
Q 036589 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC-------NVISFYGRARLLEHALQVFDE----MPSFNVQRTVKSL 125 (176)
Q Consensus 57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~-------~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~~~ 125 (176)
+.+-..+.+++++|...|.++... |...+..+.| .+.+.|...|+...--+.... |.+..-+..+...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 445567889999999999999998 8877775554 467788888876544333322 2222212233444
Q ss_pred HHHHHHHHhc-CcHHHHHHHHHHHHh
Q 036589 126 NTLLNALLTC-GKLDRMKELFISFNL 150 (176)
Q Consensus 126 ~~ll~~~~~~-g~~~~a~~l~~~m~~ 150 (176)
.+||..+... ..++..+.+.....+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~ie 113 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIE 113 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 4555555442 335555555544443
No 437
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=45.90 E-value=4.9 Score=23.76 Aligned_cols=24 Identities=8% Similarity=-0.155 Sum_probs=10.1
Q ss_pred hccccccchHHHHHHHHHhhccccC
Q 036589 150 LKAIAVLDGLCSNLKIIMNDSQVRV 174 (176)
Q Consensus 150 ~~~~~~p~~~t~~~li~~~~~~g~~ 174 (176)
+.... .+..+|.+.|++|++.|.+
T Consensus 17 QYeLs-k~~~vyRvFiNgYar~g~V 40 (88)
T PF11491_consen 17 QYELS-KNEAVYRVFINGYARNGFV 40 (88)
T ss_dssp HHTTT-TTTTB------TTSS--EE
T ss_pred HHHhh-cccceeeeeecccccceEE
Confidence 34444 5677888888888887753
No 438
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=45.27 E-value=90 Score=20.76 Aligned_cols=65 Identities=14% Similarity=-0.009 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcC---ChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589 52 LHYDLIITKLGRAK---MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF 116 (176)
Q Consensus 52 ~~y~~li~~~~~~g---~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 116 (176)
.+--.+..++.+.. +..+...+++++.++....-.....--|.-++.|.++++.+.++.+.+.+.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 33333445555544 466677899998874233334444455777888999999999999988754
No 439
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=45.11 E-value=1.3e+02 Score=22.43 Aligned_cols=95 Identities=12% Similarity=-0.006 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCC---CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH
Q 036589 53 HYDLIITKLGRAKM---FDEMQQILHQLKHDTRV---IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126 (176)
Q Consensus 53 ~y~~li~~~~~~g~---~~~a~~~~~~m~~~~g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 126 (176)
....++...| |+ ...|.+.|++....... ..+...-..++....+.|..+.-..+++.... .++..--.
T Consensus 131 lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~ 205 (324)
T PF11838_consen 131 LRALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKR 205 (324)
T ss_dssp HHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHH
T ss_pred HHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHH
Confidence 3444455555 54 46677888887764122 45556667777777888886665556655554 24677888
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589 127 TLLNALLTCGKLDRMKELFISFNLKA 152 (176)
Q Consensus 127 ~ll~~~~~~g~~~~a~~l~~~m~~~~ 152 (176)
.++.+++...+.+...++++.....+
T Consensus 206 ~~l~aLa~~~d~~~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 206 RLLSALACSPDPELLKRLLDLLLSND 231 (324)
T ss_dssp HHHHHHTT-S-HHHHHHHHHHHHCTS
T ss_pred HHHHhhhccCCHHHHHHHHHHHcCCc
Confidence 99999999999999999998888765
No 440
>PRK10941 hypothetical protein; Provisional
Probab=45.00 E-value=1.3e+02 Score=22.39 Aligned_cols=83 Identities=7% Similarity=-0.078 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM 167 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~ 167 (176)
...+.+-.+|.+.++++.|+++.+.+.... +-+..-+-.---.|.+.|.+..|..=++...+.....|+...-...+..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 345667788899999999999999988654 2234445555556888899999998888887665554888877777776
Q ss_pred hhcc
Q 036589 168 NDSQ 171 (176)
Q Consensus 168 ~~~~ 171 (176)
....
T Consensus 261 l~~~ 264 (269)
T PRK10941 261 IEQK 264 (269)
T ss_pred Hhhc
Confidence 6544
No 441
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=44.51 E-value=1.6e+02 Score=26.48 Aligned_cols=62 Identities=13% Similarity=-0.008 Sum_probs=46.8
Q ss_pred HhccCHHHHHHHHHhcccCCCCccHhH-HHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHH
Q 036589 98 GRARLLEHALQVFDEMPSFNVQRTVKS-LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLC 160 (176)
Q Consensus 98 ~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t 160 (176)
-....+.+++.+|+.|...|+...... |-..-..+.+.+.+.+|..+|..-.+..-. |-..-
T Consensus 89 ~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~ae-P~~rL 151 (974)
T KOG1166|consen 89 ELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAE-PLERL 151 (974)
T ss_pred HHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CHHHH
Confidence 356678999999999998888776554 445667778888899999999887765554 54433
No 442
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=44.43 E-value=74 Score=19.55 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=18.8
Q ss_pred HHHHHHHHhccCHHHHHHHHHhcc
Q 036589 91 CNVISFYGRARLLEHALQVFDEMP 114 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~ 114 (176)
..++.-|...|+.++|.+.++++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 456777888899999999998875
No 443
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=44.34 E-value=1.4e+02 Score=22.66 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=49.8
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC-c------------cHhHHHHHHHHHHhcC
Q 036589 70 MQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ-R------------TVKSLNTLLNALLTCG 136 (176)
Q Consensus 70 a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p------------~~~~~~~ll~~~~~~g 136 (176)
..+++....+..|+..+......++... .|++..+...++++...+-. . .......++++.. .|
T Consensus 181 l~~~l~~~~~~~g~~i~~~a~~~l~~~~--~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~~~~~~i~~l~~ai~-~~ 257 (355)
T TIGR02397 181 IVERLKKILDKEGIKIEDEALELIARAA--DGSLRDALSLLDQLISFGNGNITYEDVNELLGLVDDEKLIELLEAIL-NK 257 (355)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH-cC
Confidence 3334444333336666665555555432 47788888877765432111 1 1123344566665 48
Q ss_pred cHHHHHHHHHHHHhccccccc
Q 036589 137 KLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 137 ~~~~a~~l~~~m~~~~~~~p~ 157 (176)
+..+|.++++++.+.|.. |.
T Consensus 258 ~~~~a~~~~~~l~~~~~~-~~ 277 (355)
T TIGR02397 258 DTAEALKILDEILESGVD-PE 277 (355)
T ss_pred CHHHHHHHHHHHHHcCCC-HH
Confidence 999999999999988776 53
No 444
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=44.31 E-value=82 Score=19.98 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=49.0
Q ss_pred HHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC------------------ccHhHHHHHHHHHH
Q 036589 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ------------------RTVKSLNTLLNALL 133 (176)
Q Consensus 72 ~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------------------p~~~~~~~ll~~~~ 133 (176)
+.|..+....+-.+..++..-|...++-. -..|..++++|.+.|.. +-...+...+..+.
T Consensus 4 ~~y~~L~~~~~~~~~~vtl~elA~~l~cS--~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l 81 (115)
T PF12793_consen 4 EQYQRLWQHYGGQPVEVTLDELAELLFCS--RRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELL 81 (115)
T ss_pred HHHHHHHHHcCCCCcceeHHHHHHHhCCC--HHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHH
Confidence 44555555545556666666666665433 34567788888876621 22355677788888
Q ss_pred hcCcHHHHHHHHHH
Q 036589 134 TCGKLDRMKELFIS 147 (176)
Q Consensus 134 ~~g~~~~a~~l~~~ 147 (176)
..|+++.|.+++..
T Consensus 82 ~~g~~~~a~~ll~~ 95 (115)
T PF12793_consen 82 EQGKYEQALQLLDF 95 (115)
T ss_pred HcCCHHHHHHHHHh
Confidence 99999999999873
No 445
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=44.26 E-value=1.6e+02 Score=25.16 Aligned_cols=69 Identities=7% Similarity=0.021 Sum_probs=46.3
Q ss_pred CCCCchHHHHHHHHHHHhccC----HHHHHHHHHhccc----CCCCc---cHhHHHHHHHHHHhcCcHHH---HHHHHHH
Q 036589 82 RVIPEEIIFCNVISFYGRARL----LEHALQVFDEMPS----FNVQR---TVKSLNTLLNALLTCGKLDR---MKELFIS 147 (176)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~----~~~~p---~~~~~~~ll~~~~~~g~~~~---a~~l~~~ 147 (176)
|+..|...|..|+.++...-+ .+++.++++.++. .|+.+ |.-.-+.+...|+..|+.+- |...+.+
T Consensus 212 gyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L~e 291 (677)
T PF05664_consen 212 GYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQLQE 291 (677)
T ss_pred CCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 889999999999999877544 4666666665543 55544 33345577789999897554 4444555
Q ss_pred HHh
Q 036589 148 FNL 150 (176)
Q Consensus 148 m~~ 150 (176)
...
T Consensus 292 v~~ 294 (677)
T PF05664_consen 292 VAK 294 (677)
T ss_pred HHH
Confidence 443
No 446
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.86 E-value=2.7e+02 Score=25.76 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=69.6
Q ss_pred HHhccChhHHHHhhcCCCCCCCCCCC----------CC----CCC---CCCc--HHHHHHHHHHHHhcCChHHHHHHHHH
Q 036589 16 LHLQKHPKLALQLFKNPNPNANDTEA----------PP----LKP---FRYN--LLHYDLIITKLGRAKMFDEMQQILHQ 76 (176)
Q Consensus 16 ~~~~~~~~~A~~~~~~~~~~~~~~~~----------~~----~~~---~~~~--~~~y~~li~~~~~~g~~~~a~~~~~~ 76 (176)
|...|.+.+|+..|.+. ..+...+. |+ ..| .++. ..-|-.+++.+-+.+..+.+.++=..
T Consensus 930 yl~tge~~kAl~cF~~a-~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSA-LSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eecCCchHHHHHHHHHH-hhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 77789999999999887 33322221 10 111 1222 45688899999999999998887666
Q ss_pred HhhcCCC-CCc-hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcH
Q 036589 77 LKHDTRV-IPE-EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138 (176)
Q Consensus 77 m~~~~g~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 138 (176)
..+..+. .|. ..+++++.+.....|.+-+|...+-.-... ..-..+.--++-.++.+|.+
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccch
Confidence 6655221 222 244566666666667777666555444321 12223344444455555543
No 447
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=43.79 E-value=11 Score=30.07 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=35.8
Q ss_pred ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 100 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
.+.+++-+++++.+.+.| .+| ....-|++|.+.+++++|.+-+++-.+
T Consensus 67 ~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 67 VALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred CCcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhh
Confidence 345788888888888765 233 344567899999999999998887654
No 448
>PRK09687 putative lyase; Provisional
Probab=43.41 E-value=1.4e+02 Score=22.28 Aligned_cols=104 Identities=13% Similarity=-0.019 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589 52 LHYDLIITKLGRAK-MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130 (176)
Q Consensus 52 ~~y~~li~~~~~~g-~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 130 (176)
.+-...+.++++.+ +...+...+..+... ++..+-...+.++++.|+. .++..+-+..+.+ + ..-..+.
T Consensus 174 ~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ 243 (280)
T PRK09687 174 DVRNWAAFALNSNKYDNPDIREAFVAMLQD----KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIE 243 (280)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhcC----CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHH
Confidence 34444444444432 123344444444433 3555566667777777774 4444444444332 2 2346677
Q ss_pred HHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589 131 ALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169 (176)
Q Consensus 131 ~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~ 169 (176)
+++..|.- +|...+..+.+.. ||..+-...+.++.
T Consensus 244 ALg~ig~~-~a~p~L~~l~~~~---~d~~v~~~a~~a~~ 278 (280)
T PRK09687 244 AAGELGDK-TLLPVLDTLLYKF---DDNEIITKAIDKLK 278 (280)
T ss_pred HHHhcCCH-hHHHHHHHHHhhC---CChhHHHHHHHHHh
Confidence 77777775 5666666666421 55555555555553
No 449
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=43.38 E-value=1.7e+02 Score=23.28 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=63.9
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHH------------HHHHHhcCChHHHHHHHHHHh
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLI------------ITKLGRAKMFDEMQQILHQLK 78 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l------------i~~~~~~g~~~~a~~~~~~m~ 78 (176)
.|..-+-.+|++++|..++.+. -+.||+.| ++.|.-.+++-.|.-+-+++.
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el-----------------~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~ 198 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCEL-----------------QVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKIN 198 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-----------------chhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 4566777899999999999888 45566655 456667788888877777766
Q ss_pred hcCCCCCch-----HHHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589 79 HDTRVIPEE-----IIFCNVISFYGRARLLEHALQVFDEMPSFN 117 (176)
Q Consensus 79 ~~~g~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 117 (176)
...=-.||. .-|+.+++.....+.+-.+.+.|+.....|
T Consensus 199 ~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 199 KKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 552123333 456777777778888888888888776544
No 450
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.22 E-value=2e+02 Score=25.07 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=8.5
Q ss_pred cchHHHHHHHHHhhc
Q 036589 156 LDGLCSNLKIIMNDS 170 (176)
Q Consensus 156 p~~~t~~~li~~~~~ 170 (176)
.+...|..++..|..
T Consensus 453 L~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 453 LKPLVYEMVLVEFLA 467 (846)
T ss_pred cCchHHHHHHHHHHH
Confidence 445566666665543
No 451
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.53 E-value=2.2e+02 Score=24.47 Aligned_cols=86 Identities=14% Similarity=0.261 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-------------CccHhHHHHHHHHHHh
Q 036589 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-------------QRTVKSLNTLLNALLT 134 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------------~p~~~~~~~ll~~~~~ 134 (176)
++..+.+..+.+..|+..+......++.. -.|++..|+.+++++...|- ..+......++.++.+
T Consensus 180 eEI~k~L~~Il~kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~~d~e~IfdLldAI~k 257 (702)
T PRK14960 180 DEITKHLGAILEKEQIAADQDAIWQIAES--AQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQ 257 (702)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhccCCHHHHHHHHHHHHh
Confidence 44455555554444777777766656554 36899999988877654331 1233345566666555
Q ss_pred cCcHHHHHHHHHHHHhccccccc
Q 036589 135 CGKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 135 ~g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
++.+++.++++++.+.|.. ++
T Consensus 258 -~d~~~al~~L~el~~~g~d-~~ 278 (702)
T PRK14960 258 -NQREKVSQLLLQFRYQALD-VS 278 (702)
T ss_pred -cCHHHHHHHHHHHHHhCCC-HH
Confidence 7789999999999988886 55
No 452
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.46 E-value=1.6e+02 Score=22.70 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=46.6
Q ss_pred CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC---CC-----------CccHhHHHHHHHHHHhcCcHHHHHHHHHH
Q 036589 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF---NV-----------QRTVKSLNTLLNALLTCGKLDRMKELFIS 147 (176)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~-----------~p~~~~~~~ll~~~~~~g~~~~a~~l~~~ 147 (176)
|+..+......++.. -.|++..+...++.+... ++ .+....| .++++. ..|+..++..++++
T Consensus 184 g~~i~~~al~~l~~~--~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if-~l~~ai-~~~~~~~a~~~~~~ 259 (367)
T PRK14970 184 GIKFEDDALHIIAQK--ADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYI-NVTDLI-LENKIPELLLAFNE 259 (367)
T ss_pred CCCCCHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHH-HHHHHH-HcCCHHHHHHHHHH
Confidence 766666666666554 246788888877765421 11 1111222 244444 45899999999999
Q ss_pred HHhccccccchHHHHHH
Q 036589 148 FNLKAIAVLDGLCSNLK 164 (176)
Q Consensus 148 m~~~~~~~p~~~t~~~l 164 (176)
+...|.. |. .....+
T Consensus 260 l~~~~~~-~~-~il~~l 274 (367)
T PRK14970 260 ILRKGFD-GH-HFIAGL 274 (367)
T ss_pred HHHcCCC-HH-HHHHHH
Confidence 9888876 63 343333
No 453
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=42.18 E-value=2.6e+02 Score=25.21 Aligned_cols=52 Identities=8% Similarity=-0.039 Sum_probs=39.1
Q ss_pred ccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh-ccccccchHHHHHHHHHhhccc
Q 036589 120 RTVKSLNTLLNALLTCGKLDRMKELFISFNL-KAIAVLDGLCSNLKIIMNDSQV 172 (176)
Q Consensus 120 p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~-~~~~~p~~~t~~~li~~~~~~g 172 (176)
-|..++..-...+...|++.+|.+++.++.+ .+-. ++...|-.++..+...|
T Consensus 1229 ~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es-~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1229 SDSKVWQIAKKHAKALGQYGRALKALLKLIEENGES-ATKDVAVLLAELLENLG 1281 (1304)
T ss_pred CCchheehhHHHHHHHHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHhC
Confidence 4566666777777888999999999988875 4555 78778877777766555
No 454
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.37 E-value=2.6e+02 Score=24.87 Aligned_cols=110 Identities=12% Similarity=0.146 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcC----CCCCchHHHHHHHHHHHhccC-----------------HHHHHHHHH
Q 036589 53 HYDLIITKLGRAKMFDEMQQILHQLKHDT----RVIPEEIIFCNVISFYGRARL-----------------LEHALQVFD 111 (176)
Q Consensus 53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~----g~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~ 111 (176)
-|..|+..|...|+.++|.++|.+..... +..++. +-.+++.+.+.+. .+.+.++|.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~--~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift 583 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDG--LEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFT 583 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhh--HHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeee
Confidence 48889999999999999999999998742 111111 1124444444443 333444444
Q ss_pred hc---ccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcc
Q 036589 112 EM---PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQ 171 (176)
Q Consensus 112 ~m---~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~ 171 (176)
.- ....+.++ -+-.|......+-+...++.+....-. ++..-.+.++..|++.
T Consensus 584 ~~~~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li~~~~~-~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 584 SEDKQEAESISRD------DVLNYLKSKEPKLLIPYLEHLISDNRL-TSTLLHTVLLKLYLEK 639 (877)
T ss_pred ccChhhhccCCHH------HHHHHhhhhCcchhHHHHHHHhHhccc-cchHHHHHHHHHHHHH
Confidence 30 00111111 233456667777888888888766555 6788888888888753
No 455
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.68 E-value=1.6e+02 Score=22.28 Aligned_cols=127 Identities=12% Similarity=0.131 Sum_probs=76.6
Q ss_pred hccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----CCCCCchHHHHHH
Q 036589 18 LQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD----TRVIPEEIIFCNV 93 (176)
Q Consensus 18 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----~g~~~~~~~~~~l 93 (176)
+..++++|+.-|.....-.+ ..-...-...-.+|....+.+++++.+.-|.++... ..-.-...+.|++
T Consensus 39 ~e~~p~~Al~sF~kVlelEg-------EKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~I 111 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEG-------EKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSI 111 (440)
T ss_pred cccCHHHHHHHHHHHHhccc-------ccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 34578889988887521110 111223345666788889999999999988887643 0112245667888
Q ss_pred HHHHHhccCHHHHHHHHHhccc----CC-CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589 94 ISFYGRARLLEHALQVFDEMPS----FN-VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 94 i~~~~~~g~~~~a~~~~~~m~~----~~-~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~ 151 (176)
+..-+-..+.+-..++|+.-.+ .. -..=..|=+-|-..|...+++.+..++++++.+.
T Consensus 112 lDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 112 LDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 8877766666655555543321 10 0011112234556777788888888888887643
No 456
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.09 E-value=1.3e+02 Score=21.11 Aligned_cols=93 Identities=13% Similarity=0.011 Sum_probs=62.8
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHH--HHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLII--TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF 90 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li--~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 90 (176)
-......|+-..|+..|+++... .+.+.-......|= ..+..+|-++++..-.+-+... +-.--...-
T Consensus 101 at~~a~kgdta~AV~aFdeia~d---------t~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d-~n~mR~sAr 170 (221)
T COG4649 101 ATLLAQKGDTAAAVAAFDEIAAD---------TSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAR 170 (221)
T ss_pred HHHHhhcccHHHHHHHHHHHhcc---------CCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCC-CChhHHHHH
Confidence 34566789999999999999322 22222121222232 2345688899988888877766 433334444
Q ss_pred HHHHHHHHhccCHHHHHHHHHhccc
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPS 115 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~ 115 (176)
..|--+-.+.|++.+|.+.|..+..
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHc
Confidence 5677777899999999999999874
No 457
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=40.07 E-value=35 Score=22.02 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=23.0
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCN 92 (176)
Q Consensus 63 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~ 92 (176)
-.|+...|.++++.++.. |..|....|..
T Consensus 9 L~G~~~ra~riL~~L~~E-g~ep~~lLw~L 37 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAE-GVEPPILLWAL 37 (125)
T ss_dssp HTT-HHHHHHHHHHHHHT-T--HHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHC-CccHHHHHHHH
Confidence 468899999999999999 99999888863
No 458
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.74 E-value=1.8e+02 Score=22.68 Aligned_cols=71 Identities=8% Similarity=0.100 Sum_probs=46.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHH
Q 036589 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNT 127 (176)
Q Consensus 57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ 127 (176)
+.-+-.+.|+..+|.+.+.++.+...+.........||.++....-+.++..++-+-.+-..+. -..+|++
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTa 352 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTA 352 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHH
Confidence 3444457899999999999998874333333444568888888887777777776655433222 2344553
No 459
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=39.23 E-value=49 Score=19.67 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHH
Q 036589 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145 (176)
Q Consensus 103 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~ 145 (176)
.+++.+++..-.+.. ....|...|+.++.+.|.-+-|..+|
T Consensus 46 ~eq~~~mL~~W~~r~--g~~AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 46 KMQAKQLLVAWQDRE--GSQATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred HHHHHHHHHHHHHhc--CccccHHHHHHHHHHcCcHHHHHhhC
Confidence 344444444444221 12345555666666665555555443
No 460
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=39.08 E-value=1.8e+02 Score=22.55 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhhcCCCCCch----HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH
Q 036589 67 FDEMQQILHQLKHDTRVIPEE----IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133 (176)
Q Consensus 67 ~~~a~~~~~~m~~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 133 (176)
-+++..++.++.+. .|+. .-|-++.+...+.|.+++.+.+|++....|-.|--..-.++++.+-
T Consensus 119 ~eei~~~L~~li~~---IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN---IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45677777777765 2443 3456677888888999999999999998888887777676666655
No 461
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.02 E-value=3.1e+02 Score=27.34 Aligned_cols=83 Identities=13% Similarity=0.077 Sum_probs=48.1
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-hHH
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE-EII 89 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~ 89 (176)
.+...|..-++++....+...- .. +...+. -|--....|++..|...|+.+.+. .|+ ...
T Consensus 1425 llq~lY~~i~dpDgV~Gv~~~r-~a--------------~~sl~~-qil~~e~~g~~~da~~Cye~~~q~---~p~~~~~ 1485 (2382)
T KOG0890|consen 1425 LLQNLYGSIHDPDGVEGVSARR-FA--------------DPSLYQ-QILEHEASGNWADAAACYERLIQK---DPDKEKH 1485 (2382)
T ss_pred HHHHHHHhcCCcchhhhHHHHh-hc--------------CccHHH-HHHHHHhhccHHHHHHHHHHhhcC---CCccccc
Confidence 3445677777777666665532 11 122222 445566788888888888888855 344 455
Q ss_pred HHHHHHHHHhccCHHHHHHHHHh
Q 036589 90 FCNVISFYGRARLLEHALQVFDE 112 (176)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~ 112 (176)
++-++......|.+...+...+-
T Consensus 1486 ~~g~l~sml~~~~l~t~i~~~dg 1508 (2382)
T KOG0890|consen 1486 HSGVLKSMLAIQHLSTEILHLDG 1508 (2382)
T ss_pred hhhHHHhhhcccchhHHHhhhcc
Confidence 56555555555555555544433
No 462
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.01 E-value=1.7e+02 Score=22.18 Aligned_cols=116 Identities=18% Similarity=0.102 Sum_probs=73.9
Q ss_pred HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-chH
Q 036589 10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEI 88 (176)
Q Consensus 10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-~~~ 88 (176)
-.+...|...|+.+.|..++..+ +... . .........=|..+.+.....+...+-.+.-+. | |..
T Consensus 172 ~~la~~~l~~g~~e~A~~iL~~l-P~~~-------~--~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad----Pdd~~ 237 (304)
T COG3118 172 LLLAECLLAAGDVEAAQAILAAL-PLQA-------Q--DKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD----PDDVE 237 (304)
T ss_pred HHHHHHHHHcCChHHHHHHHHhC-cccc-------h--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC----CCCHH
Confidence 35678899999999999999999 4431 1 111112223345555666666555555555544 4 455
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhccc--CCCCccHhHHHHHHHHHHhcCcHHH
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPS--FNVQRTVKSLNTLLNALLTCGKLDR 140 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~g~~~~ 140 (176)
.--.+...|...|+.++|.+.+-.+.+ +| --|...-..|+..|.--|.-+.
T Consensus 238 aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~-~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 238 AALALADQLHLVGRNEAALEHLLALLRRDRG-FEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-ccCcHHHHHHHHHHHhcCCCCH
Confidence 556688888999999999987776663 33 2355556667777666664443
No 463
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=38.80 E-value=1.7e+02 Score=22.16 Aligned_cols=118 Identities=8% Similarity=-0.003 Sum_probs=73.3
Q ss_pred hHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh---
Q 036589 23 KLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR--- 99 (176)
Q Consensus 23 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~--- 99 (176)
+.-+.++++..+. .+-+...+-.+|..+.+..+.+...+.++++... ..-+...|-..|.....
T Consensus 48 E~klsilerAL~~-----------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~ 114 (321)
T PF08424_consen 48 ERKLSILERALKH-----------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFA 114 (321)
T ss_pred HHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhc
Confidence 3456666665222 2346777888899999999999999999999986 22256666666655443
Q ss_pred ccCHHHHHHHHH-------hcccCC---CCcc-------HhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589 100 ARLLEHALQVFD-------EMPSFN---VQRT-------VKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153 (176)
Q Consensus 100 ~g~~~~a~~~~~-------~m~~~~---~~p~-------~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~ 153 (176)
.-.++....+|. ...... ..+. ...|.-+...+...|..+.|..+++.+.+.++
T Consensus 115 ~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 115 SFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred cCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 122444444443 333211 0111 12233444445678999999999999998766
No 464
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.32 E-value=3.3e+02 Score=25.23 Aligned_cols=129 Identities=8% Similarity=-0.036 Sum_probs=74.6
Q ss_pred HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH
Q 036589 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI 88 (176)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~ 88 (176)
|-.+++.+-+-+..+.+.++-.....+- .+..+.-..+++++.+-....|++.+|...+-.-. ....-..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l-------~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np---dserrrd 1055 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENL-------PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP---DSERRRD 1055 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC---cHHHHHH
Confidence 4556777777777776665544331221 12223345578888888889999988865543332 2223345
Q ss_pred HHHHHHHHHHhccCHHHH------------HH-HHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHH
Q 036589 89 IFCNVISFYGRARLLEHA------------LQ-VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS 147 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a------------~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~ 147 (176)
+...++..++.+|+++.- .. +++.--+....-....|+.|-.-+...+++.+|.-+.-+
T Consensus 1056 cLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1056 CLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 566788888899886543 23 333222222122233455555556788898888776543
No 465
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=38.28 E-value=85 Score=20.90 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHH
Q 036589 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131 (176)
Q Consensus 89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 131 (176)
|...++.|. +.|-..+...++++|.+.|+..+...|+.++.-
T Consensus 112 tlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 112 TLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred hhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 444444443 456677777888888878877777777776654
No 466
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.00 E-value=2.1e+02 Score=22.91 Aligned_cols=92 Identities=16% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC---------CCCcc
Q 036589 52 LHYDLIITKLGRAKMFDEMQQILHQLKHD-TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF---------NVQRT 121 (176)
Q Consensus 52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------~~~p~ 121 (176)
..+..+.+.|...|+++.|.+.|-+.+.. ...+-....|-.+|..-.-.|+|........+..+. .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Q ss_pred HhHHHHHHHHHHhcCcHHHHHHHH
Q 036589 122 VKSLNTLLNALLTCGKLDRMKELF 145 (176)
Q Consensus 122 ~~~~~~ll~~~~~~g~~~~a~~l~ 145 (176)
..++..+...+.+ +++.|.+.|
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~f 252 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYF 252 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHH
No 467
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=37.94 E-value=1.3e+02 Score=22.23 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=28.5
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP 114 (176)
Q Consensus 63 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 114 (176)
-..+|...-.++..|....--.|+......+|++|.+..+-..|...+..-.
T Consensus 208 t~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~cl 259 (293)
T KOG3036|consen 208 TAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCL 259 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence 3445555555555555443334555666666666666665555555555444
No 468
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.92 E-value=90 Score=18.65 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=31.8
Q ss_pred HhccCHHHHHH----HHHhcccCCCCcc--HhHHH--HHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 98 GRARLLEHALQ----VFDEMPSFNVQRT--VKSLN--TLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 98 ~~~g~~~~a~~----~~~~m~~~~~~p~--~~~~~--~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
.+.|++.+|.+ .|+...+.+.... ...+. .+.......|+.++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46788877754 4444333332221 22232 234455678999999999999764
No 469
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=37.73 E-value=2.3e+02 Score=23.36 Aligned_cols=114 Identities=10% Similarity=-0.021 Sum_probs=68.4
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHH
Q 036589 49 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128 (176)
Q Consensus 49 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 128 (176)
+....+..+++.+... +.+...++++++... . ...+..++++...+|-.+....+.+.+....+. +...-..+
T Consensus 308 ~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~~-~----~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~ 380 (574)
T smart00638 308 PAAAKFLRLVRLLRTL-SEEQLEQLWRQLYEK-K----KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLL 380 (574)
T ss_pred chHHHHHHHHHHHHhC-CHHHHHHHHHHHHhC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHH
Confidence 3566777777766544 477888888887642 2 678899999999999988777777777755543 33333334
Q ss_pred HHHHHh--cCcHHHHHHHHHHHHhccccccc-------hHHHHHHHHHhhc
Q 036589 129 LNALLT--CGKLDRMKELFISFNLKAIAVLD-------GLCSNLKIIMNDS 170 (176)
Q Consensus 129 l~~~~~--~g~~~~a~~l~~~m~~~~~~~p~-------~~t~~~li~~~~~ 170 (176)
.....- .-..+-...++.-+...... +. ..+|..|++-+|.
T Consensus 381 ~~~~~~~~~Pt~~~l~~l~~l~~~~~~~-~~~~l~~sa~l~~~~lv~~~c~ 430 (574)
T smart00638 381 AVLPHTARYPTEEILKALFELAESPEVQ-KQPYLRESALLAYGSLVRRYCV 430 (574)
T ss_pred HHHHHhhhcCCHHHHHHHHHHhcCcccc-ccHHHHHHHHHHHHHHHHHHhc
Confidence 433333 33333344444333333444 44 3556666664443
No 470
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=37.52 E-value=1.7e+02 Score=21.80 Aligned_cols=77 Identities=10% Similarity=-0.057 Sum_probs=43.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHhcccCCCC-ccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----cccccchHHHHHH
Q 036589 91 CNVISFYGRARLLEHALQVFDEMPSFNVQ-RTVKSLNTLLNALLTCGKLDRMKELFISFNLK-----AIAVLDGLCSNLK 164 (176)
Q Consensus 91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~-----~~~~p~~~t~~~l 164 (176)
..-++.+...|++..|++++.+..+.--. ....++..|- .++.+-.....++.+. -.. -|...|..+
T Consensus 131 ~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~------~~L~e~~~~i~~~ld~~l~~~~~~-Fd~~~Y~~v 203 (291)
T PF10475_consen 131 QSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLS------SQLQETLELIEEQLDSDLSKVCQD-FDPDKYSKV 203 (291)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHH
Confidence 34567777889999999988887642100 0111111111 1223333333333221 113 788999999
Q ss_pred HHHhhccccC
Q 036589 165 IIMNDSQVRV 174 (176)
Q Consensus 165 i~~~~~~g~~ 174 (176)
+.+|.-.|+.
T Consensus 204 ~~AY~lLgk~ 213 (291)
T PF10475_consen 204 QEAYQLLGKT 213 (291)
T ss_pred HHHHHHHhhh
Confidence 9999887754
No 471
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=37.46 E-value=1.2e+02 Score=20.69 Aligned_cols=48 Identities=10% Similarity=-0.031 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC
Q 036589 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ 119 (176)
Q Consensus 72 ~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 119 (176)
..++.+.+..|..++......+...+....-+..+.++++.+.+.|++
T Consensus 63 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~ 110 (198)
T TIGR01428 63 EALRYLLGRLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERGYR 110 (198)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCe
Confidence 344444444466655555555666666565567777778777776644
No 472
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.29 E-value=2.3e+02 Score=23.12 Aligned_cols=86 Identities=14% Similarity=0.242 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC-c------------cHhHHHHHHHHHHh
Q 036589 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ-R------------TVKSLNTLLNALLT 134 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p------------~~~~~~~ll~~~~~ 134 (176)
++....+....+..|+..+......+... -.|++..|.+.++.+...+-. . +......++.+. .
T Consensus 181 ~el~~~L~~i~k~egi~id~~al~~La~~--s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~~~~~~vf~Li~ai-~ 257 (486)
T PRK14953 181 EQIKEYLKRICNEEKIEYEEKALDLLAQA--SEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRKFLNLL-L 257 (486)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 33344444444344776666666655544 348889898888876433211 1 111233444444 4
Q ss_pred cCcHHHHHHHHHHHHhccccccc
Q 036589 135 CGKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 135 ~g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
.|+.++|..+++++...|.. |.
T Consensus 258 ~~d~~~al~~l~~L~~~g~~-~~ 279 (486)
T PRK14953 258 ESDVDEAIKFLRTLEEKGYN-LN 279 (486)
T ss_pred CCCHHHHHHHHHHHHHcCCC-HH
Confidence 68899999999999988876 54
No 473
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=37.08 E-value=1.7e+02 Score=24.20 Aligned_cols=65 Identities=6% Similarity=-0.054 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154 (176)
Q Consensus 88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~ 154 (176)
..-.-++..|.+.|-.+.|.++.+.+-..- ....-|..-|..+.+.|+.+.+..+-..+.+....
T Consensus 406 ~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~ 470 (566)
T PF07575_consen 406 DDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCN 470 (566)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhc
Confidence 334457788888888888888888766432 23345777788888888888777777666654443
No 474
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=37.02 E-value=1.7e+02 Score=23.49 Aligned_cols=62 Identities=5% Similarity=-0.107 Sum_probs=40.8
Q ss_pred HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036589 10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 79 (176)
Q Consensus 10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 79 (176)
--|++...-.||++...+.++.+.++- -+-.|...+=.-+.-+|...+++.+|.+.|-.+..
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~i--------y~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEI--------YGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhh--------cCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666899888899999984332 34444333223466777888888888887766543
No 475
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.89 E-value=2.4e+02 Score=23.27 Aligned_cols=119 Identities=13% Similarity=0.004 Sum_probs=72.4
Q ss_pred ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc--------HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCCchHH
Q 036589 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYN--------LLHYDLIITKLGRAKMFDEMQQILHQLKHDT-RVIPEEII 89 (176)
Q Consensus 19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-g~~~~~~~ 89 (176)
.|++.+|++-+..| .+.- .-.|. ......+...|+..+.++.|+.-|....+.. ....-...
T Consensus 336 ~~~~~~al~~i~dm-~~w~--------~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 336 RGDYVEALEEIVDM-KNWC--------TRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred hCCHHHHHHHHHHH-HHHH--------HhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 68888888887777 4431 11222 2222223334446788999998887766551 12223344
Q ss_pred HHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH------HH--HHHH--HhcCcHHHHHHHHHHHHh
Q 036589 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN------TL--LNAL--LTCGKLDRMKELFISFNL 150 (176)
Q Consensus 90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~------~l--l~~~--~~~g~~~~a~~l~~~m~~ 150 (176)
-..+...|.+.|+.+.-.++++.+-- +|..++. .+ +.++ .+.+++.+|...+++-.+
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~i~p----~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDLIGP----LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 45577888999998888888887762 3232222 22 2222 367899999988887544
No 476
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.88 E-value=2.6e+02 Score=23.63 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=50.7
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC-C--C----------CccHhHHHHHHHHHHhcC
Q 036589 70 MQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF-N--V----------QRTVKSLNTLLNALLTCG 136 (176)
Q Consensus 70 a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--~----------~p~~~~~~~ll~~~~~~g 136 (176)
....+.+..+..|+..+......++... .|++..|...++++... | + .++...+..++++.. .+
T Consensus 185 i~~~L~~ia~~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~dai~-~~ 261 (614)
T PRK14971 185 IVNHLQYVASKEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDALL-AG 261 (614)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHHHH-cC
Confidence 3344444433337766666555555443 58888888888765321 1 1 122233334444444 47
Q ss_pred cHHHHHHHHHHHHhccccccc
Q 036589 137 KLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 137 ~~~~a~~l~~~m~~~~~~~p~ 157 (176)
+..+|+.+++++...|.. |.
T Consensus 262 ~~~~al~ll~~Ll~~g~~-~~ 281 (614)
T PRK14971 262 KVSDSLLLFDEILNKGFD-GS 281 (614)
T ss_pred CHHHHHHHHHHHHHcCCC-HH
Confidence 899999999999998887 54
No 477
>COG0819 TenA Putative transcription activator [Transcription]
Probab=36.80 E-value=1.6e+02 Score=21.15 Aligned_cols=88 Identities=6% Similarity=-0.096 Sum_probs=47.1
Q ss_pred CCCCchHHHHHHHHHHHhccCHHHHHHH-----------HHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589 82 RVIPEEIIFCNVISFYGRARLLEHALQV-----------FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150 (176)
Q Consensus 82 g~~~~~~~~~~li~~~~~~g~~~~a~~~-----------~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~ 150 (176)
...|....|+.-|...+..|++.+.+.. -+.+.+....+....|-.-|+.|+...-.+.+.++.+.+.+
T Consensus 104 ~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~ 183 (218)
T COG0819 104 EPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEEFQEAVEELEALLDS 183 (218)
T ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4567788888888888888887665432 22223222223455577777777664443334333333333
Q ss_pred ccccccchHHHHHHHHHhhc
Q 036589 151 KAIAVLDGLCSNLKIIMNDS 170 (176)
Q Consensus 151 ~~~~~p~~~t~~~li~~~~~ 170 (176)
..-. -+..-+..|.+.+..
T Consensus 184 ~~~~-~~~~~~~~l~~iF~~ 202 (218)
T COG0819 184 LAEN-SSEEELEKLKQIFLT 202 (218)
T ss_pred HHhc-CCHHHHHHHHHHHHH
Confidence 2222 333344444444443
No 478
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=36.76 E-value=1.7e+02 Score=22.13 Aligned_cols=103 Identities=7% Similarity=-0.018 Sum_probs=64.9
Q ss_pred CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhc---CChHHHHHHHHHHhhcC---
Q 036589 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA---KMFDEMQQILHQLKHDT--- 81 (176)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~---g~~~~a~~~~~~m~~~~--- 81 (176)
-+-.+|+.+.+..+.++..+.|+.+... .+-+...|-..|+..... -.++.+..+|.+..+..
T Consensus 67 L~l~~l~~~~~~~~~~~l~~~we~~l~~-----------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~ 135 (321)
T PF08424_consen 67 LLLGYLEEGEKVWDSEKLAKKWEELLFK-----------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRR 135 (321)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh
Confidence 3445677777777888888888887322 122677888888776652 23556666555544320
Q ss_pred --CC----CC-------chHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-Ccc
Q 036589 82 --RV----IP-------EEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-QRT 121 (176)
Q Consensus 82 --g~----~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~ 121 (176)
+. .+ -...|..+...+..+|-.+.|+.+++.+.+.++ .|.
T Consensus 136 ~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 136 RSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 11 01 113333445556779999999999999988775 443
No 479
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=36.50 E-value=1.2e+02 Score=20.82 Aligned_cols=45 Identities=7% Similarity=0.173 Sum_probs=33.5
Q ss_pred HHHHhccc-CCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589 108 QVFDEMPS-FNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152 (176)
Q Consensus 108 ~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~ 152 (176)
++++.+.+ .|+.|...++.-++..+.+.-.++.+.++++.+...|
T Consensus 152 ~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 152 DLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 44555553 6777888888888888888778888888888876655
No 480
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.28 E-value=2e+02 Score=22.21 Aligned_cols=86 Identities=12% Similarity=0.085 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-------------CccHhHHHHHHHHHHh
Q 036589 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-------------QRTVKSLNTLLNALLT 134 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------------~p~~~~~~~ll~~~~~ 134 (176)
++..+.+....+..|+..+......++.. -.|++..|...++.....|- .++......++++. .
T Consensus 181 ~el~~~L~~~~~~~g~~i~~~al~~ia~~--s~G~~R~al~~l~~~~~~~~~~It~~~v~~~l~~~~~~~i~~l~~ai-~ 257 (363)
T PRK14961 181 EKIFNFLKYILIKESIDTDEYALKLIAYH--AHGSMRDALNLLEHAINLGKGNINIKNVTDMLGLLNEKQSFLLTDAL-L 257 (363)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHH-H
Confidence 34444444433333655555554444443 35888888888877643321 12222333444444 4
Q ss_pred cCcHHHHHHHHHHHHhccccccc
Q 036589 135 CGKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 135 ~g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
.++.+++..+++++.+.|.. |.
T Consensus 258 ~~~~~~~~~~~~~l~~~g~~-~~ 279 (363)
T PRK14961 258 KKDSKKTMLLLNKISSIGIE-WE 279 (363)
T ss_pred cCCHHHHHHHHHHHHHcCCC-HH
Confidence 58899999999999988776 54
No 481
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=35.72 E-value=2.5e+02 Score=23.83 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=64.5
Q ss_pred ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 036589 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG 98 (176)
Q Consensus 19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~ 98 (176)
.|+...|...+... ... ++...++. .-.|.+.+.+.|...+|..++.+-..-. .....++-++-++|.
T Consensus 620 ~gn~~~a~~cl~~a-~~~--------~p~~~~v~-~v~la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l 687 (886)
T KOG4507|consen 620 VGNSTFAIACLQRA-LNL--------APLQQDVP-LVNLANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYL 687 (886)
T ss_pred cCCcHHHHHHHHHH-hcc--------Chhhhccc-HHHHHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHH
Confidence 58888887777665 221 12222222 2224555566677778888887776552 334456777888999
Q ss_pred hccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH
Q 036589 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133 (176)
Q Consensus 99 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 133 (176)
...+++.|++.|++..+.. .-+..+-+.|+..-|
T Consensus 688 ~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 688 ALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 9999999999999877543 234555555554444
No 482
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=35.23 E-value=2.4e+02 Score=22.72 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC-C--C-----------CccHhHHHHHHHHHHh
Q 036589 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF-N--V-----------QRTVKSLNTLLNALLT 134 (176)
Q Consensus 69 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--~-----------~p~~~~~~~ll~~~~~ 134 (176)
+..+.+....+..|+..+......++... .|++..|...++.+... + + .+....| .+++ +..
T Consensus 184 el~~~L~~~~~~eg~~i~~~al~~L~~~s--~gdlr~a~~~Lekl~~~~~~~It~~~V~~l~~~~~~~~vf-~L~~-ai~ 259 (451)
T PRK06305 184 TIIDKLALIAKQEGIETSREALLPIARAA--QGSLRDAESLYDYVVGLFPKSLDPDSVAKALGLLSQDSLY-TLDE-AIT 259 (451)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHHCCCCHHHHH-HHHH-HHH
Confidence 33444444433336666666666555443 58888888888765421 1 1 1112223 4454 446
Q ss_pred cCcHHHHHHHHHHHHhccccccc
Q 036589 135 CGKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 135 ~g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
.+++++|..+++++...|.. |.
T Consensus 260 ~~d~~~al~~l~~L~~~g~~-~~ 281 (451)
T PRK06305 260 TQNYAQALEPVTDAMNSGVA-PA 281 (451)
T ss_pred cCCHHHHHHHHHHHHHcCcC-HH
Confidence 68999999999999888876 53
No 483
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=35.23 E-value=1.3e+02 Score=19.52 Aligned_cols=61 Identities=8% Similarity=0.122 Sum_probs=40.6
Q ss_pred CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc-HhHHHHHHHHHHhcCcHHHHHHHHH
Q 036589 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT-VKSLNTLLNALLTCGKLDRMKELFI 146 (176)
Q Consensus 83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~l~~ 146 (176)
.+=|..-....|..--.+ ++..++|..|.+.|+-.. +..|......+...|++.+|.++|+
T Consensus 62 YknD~RyLkiWi~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 62 YKNDPRYLKIWLKYADNC---DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred hcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444433333223 446778999988776554 4456777888889999999999986
No 484
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=34.73 E-value=2.7e+02 Score=23.19 Aligned_cols=85 Identities=14% Similarity=0.189 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-Ccc------------HhHHHHHHHHHHhc
Q 036589 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-QRT------------VKSLNTLLNALLTC 135 (176)
Q Consensus 69 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~------------~~~~~~ll~~~~~~ 135 (176)
+....++...+..|+..+......++.. ..|++..|+..+++....+- ..+ ......++.++ ..
T Consensus 182 ei~~~L~~i~~~egi~i~~~al~~ia~~--s~G~~R~al~~Ldq~~~~~~~~It~~~V~~vlg~~~~~~i~~l~~al-~~ 258 (559)
T PRK05563 182 DIVERLKYILDKEGIEYEDEALRLIARA--AEGGMRDALSILDQAISFGDGKVTYEDALEVTGSVSQEALDDLVDAI-VE 258 (559)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCCHHHHHHHHHHH-Hc
Confidence 3344444444344777777666666554 35889999999887654321 111 12233445444 35
Q ss_pred CcHHHHHHHHHHHHhccccccc
Q 036589 136 GKLDRMKELFISFNLKAIAVLD 157 (176)
Q Consensus 136 g~~~~a~~l~~~m~~~~~~~p~ 157 (176)
|+..+|.++++++.+.|.. |.
T Consensus 259 ~d~~~al~~l~~l~~~g~d-~~ 279 (559)
T PRK05563 259 GDVAKALKILEELLDEGKD-PN 279 (559)
T ss_pred cCHHHHHHHHHHHHHcCCC-HH
Confidence 7899999999999988877 64
No 485
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.40 E-value=2.3e+02 Score=22.23 Aligned_cols=57 Identities=12% Similarity=0.013 Sum_probs=40.2
Q ss_pred HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcH--HHHHHHHHHHH--hcCChHHHHHHHHHHhhc
Q 036589 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNL--LHYDLIITKLG--RAKMFDEMQQILHQLKHD 80 (176)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~y~~li~~~~--~~g~~~~a~~~~~~m~~~ 80 (176)
...+.+.+++..|.++|+.+ ..+ ++++. ..|..+..+|. ..-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l-~~r----------l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEEL-LRR----------LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHH-HHh----------CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555899999999999998 332 22222 34555555554 577889999999988866
No 486
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=33.62 E-value=1.4e+02 Score=19.48 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHHhhc---------------CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH-HHH
Q 036589 66 MFDEMQQILHQLKHD---------------TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN-TLL 129 (176)
Q Consensus 66 ~~~~a~~~~~~m~~~---------------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~ll 129 (176)
.+.++.++|.+++.. +|-.--..+--++..++.-.|..++|.++++... .-++....| -++
T Consensus 30 SW~~l~~~f~k~~~~~~R~LP~LvAaNPVNYGkP~kLscvEAlAAaLyI~G~~~~A~~lL~~Fk---WG~~F~~LN~elL 106 (127)
T PF04034_consen 30 SWNRLDEVFKKLRSRNHRLLPYLVAANPVNYGKPCKLSCVEALAAALYILGFKEQAEELLSKFK---WGHTFLELNKELL 106 (127)
T ss_pred cHHHHHHHHHhcCCCCCccCchhhccCCcccCCcccccHHHHHHHHHHHcCCHHHHHHHHhcCC---CcHHHHHHHHHHH
Confidence 455555566666643 2222233555678889999999999999988776 235555566 688
Q ss_pred HHHHhcCcHHHHHHHHHHH
Q 036589 130 NALLTCGKLDRMKELFISF 148 (176)
Q Consensus 130 ~~~~~~g~~~~a~~l~~~m 148 (176)
..|.++.+-++..++=++.
T Consensus 107 e~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 107 EAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred HHHHcCCCHHHHHHHHHHH
Confidence 9999999888877765554
No 487
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=33.62 E-value=2.9e+02 Score=23.18 Aligned_cols=132 Identities=12% Similarity=0.100 Sum_probs=72.1
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHH-HHHHHhcCChHHHHHHHHHHhhcCC--CCCch
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLI-ITKLGRAKMFDEMQQILHQLKHDTR--VIPEE 87 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l-i~~~~~~g~~~~a~~~~~~m~~~~g--~~~~~ 87 (176)
.++..+.+.+... |.+..++...... ..+..+=...+.-+ +..+...+++..|.+.++.+..... ..|-.
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~------~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSE------TYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHh------ccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 3455555555544 7777776422210 01112222333333 2233334789999999888876632 44555
Q ss_pred HHHHHHHHHHHh--ccCHHHHHHHHHhccc---------CCCCccHhHHHHHHHHHH--hcCcHHHHHHHHHHHH
Q 036589 88 IIFCNVISFYGR--ARLLEHALQVFDEMPS---------FNVQRTVKSLNTLLNALL--TCGKLDRMKELFISFN 149 (176)
Q Consensus 88 ~~~~~li~~~~~--~g~~~~a~~~~~~m~~---------~~~~p~~~~~~~ll~~~~--~~g~~~~a~~l~~~m~ 149 (176)
.++-.++.+... .+..+++++..+.+.. ....|-...|..+++.++ ..|+++.+...++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555666666544 3445555555554421 113456677777776665 4677777776666653
No 488
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=33.49 E-value=68 Score=24.54 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC 91 (176)
Q Consensus 54 y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~ 91 (176)
.-.+++.|.+.|.+++|.++....++-..--|+.....
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~ 146 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVK 146 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHH
Confidence 44679999999999999999888775523344444433
No 489
>COG5210 GTPase-activating protein [General function prediction only]
Probab=33.45 E-value=1.4e+02 Score=24.23 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN 117 (176)
Q Consensus 72 ~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 117 (176)
++++.+.+. |+.+...++..++..+.+.-.++.+..+++-+--.|
T Consensus 363 ~l~~hl~~~-~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg 407 (496)
T COG5210 363 ELYEHLLRE-GVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEG 407 (496)
T ss_pred HHHHHHHHc-CCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 355555555 566666666666666666666666666666555444
No 490
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=33.33 E-value=1.3e+02 Score=19.30 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcc-cCCCCc-cHhHHHHHHHHHHhcCcHHHH
Q 036589 103 LEHALQVFDEMP-SFNVQR-TVKSLNTLLNALLTCGKLDRM 141 (176)
Q Consensus 103 ~~~a~~~~~~m~-~~~~~p-~~~~~~~ll~~~~~~g~~~~a 141 (176)
++.++++++... ..|+.- +..+...+++...+.|-++..
T Consensus 38 ~ELaWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~ 78 (123)
T TIGR01987 38 FELAWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDE 78 (123)
T ss_pred HHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCH
Confidence 344555555443 234321 244455666666666665543
No 491
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=33.24 E-value=1.9e+02 Score=20.97 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=54.2
Q ss_pred HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF 90 (176)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~ 90 (176)
.+|+.+...|..+.|..+=++..-. .+...++...=..-|....+.|+++.|++...++-.. -+.-|...+
T Consensus 32 LVmnylv~eg~~EaA~~Fa~e~~i~--------~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~ 102 (228)
T KOG2659|consen 32 LVMNYLVHEGYVEAAEKFAKESGIK--------PPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELF 102 (228)
T ss_pred HHHHHHHhccHHHHHHHhccccCCC--------CccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHH
Confidence 4467777777766555554433111 0122233333445677778999999999988887755 344443222
Q ss_pred HHH----HHHHHhccCHHHHHHHHHhcc
Q 036589 91 CNV----ISFYGRARLLEHALQVFDEMP 114 (176)
Q Consensus 91 ~~l----i~~~~~~g~~~~a~~~~~~m~ 114 (176)
-.| +-=..+.|..++|+++.+.=.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 211 122356677888887776543
No 492
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=33.04 E-value=1.7e+02 Score=20.43 Aligned_cols=92 Identities=12% Similarity=0.140 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhc----CCCCCch-HHHHHHHHHHHhccC-----------HHHHHHHHHhccc
Q 036589 52 LHYDLIITKLGRAKMFDEMQQILHQLKHD----TRVIPEE-IIFCNVISFYGRARL-----------LEHALQVFDEMPS 115 (176)
Q Consensus 52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~----~g~~~~~-~~~~~li~~~~~~g~-----------~~~a~~~~~~m~~ 115 (176)
.-|...+.-++......++.+++++.... ..+.|+. .++..+-.+|...+. +++|...|+...+
T Consensus 29 ~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 29 TNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555545555555544432 1245554 455556666655433 5666667776664
Q ss_pred CCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589 116 FNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK 151 (176)
Q Consensus 116 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~ 151 (176)
. .|+-..|+.-|....+ |-++..+..+.
T Consensus 109 ~--~P~ne~Y~ksLe~~~k------ap~lh~e~~~~ 136 (186)
T PF06552_consen 109 E--DPNNELYRKSLEMAAK------APELHMEIHKQ 136 (186)
T ss_dssp H---TT-HHHHHHHHHHHT------HHHHHHHHHHS
T ss_pred c--CCCcHHHHHHHHHHHh------hHHHHHHHHHH
Confidence 4 5999999998888754 55565555443
No 493
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.02 E-value=91 Score=17.26 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=7.9
Q ss_pred hcCChHHHHHHHHHHhh
Q 036589 63 RAKMFDEMQQILHQLKH 79 (176)
Q Consensus 63 ~~g~~~~a~~~~~~m~~ 79 (176)
..|++-+|.++++.+-.
T Consensus 11 n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HTT-HHHHHHHHHHHCC
T ss_pred cCCCHHHhHHHHHHHHH
Confidence 34555555555555443
No 494
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=32.84 E-value=2.7e+02 Score=22.66 Aligned_cols=88 Identities=11% Similarity=0.137 Sum_probs=52.7
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHH--------HHHhccCHHHHHHHHHhccc
Q 036589 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVIS--------FYGRARLLEHALQVFDEMPS 115 (176)
Q Consensus 44 ~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~--------~~~~~g~~~~a~~~~~~m~~ 115 (176)
.+.+.||.++.|.+...++..-..+-..++|+-..+. + .|=.+-|-+||. .-.+...-++++++++.|..
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qq-a-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~ 253 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQ-A-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA 253 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-C-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch
Confidence 3567788888887777777777777777777777766 2 333333333321 12345557888888888874
Q ss_pred CCCCccHhHHHHHHHHHH
Q 036589 116 FNVQRTVKSLNTLLNALL 133 (176)
Q Consensus 116 ~~~~p~~~~~~~ll~~~~ 133 (176)
.--.-|..-|-.|...|+
T Consensus 254 ~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 254 QLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hcccccchhHHHHHHHHh
Confidence 322234444445554444
No 495
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.82 E-value=2e+02 Score=22.71 Aligned_cols=55 Identities=5% Similarity=-0.133 Sum_probs=0.0
Q ss_pred HHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc------CcHHHHHHHHH
Q 036589 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC------GKLDRMKELFI 146 (176)
Q Consensus 92 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~l~~ 146 (176)
..+..+.+.+++..|.++|+++.+...+|....+-..+..+++. -++++|.+.++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
No 496
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=32.67 E-value=31 Score=24.17 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 80 (176)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 80 (176)
+|.....++..|...|+.+...++.-.+. |+.-..+.++..|.+.|-++.-.-++.+....
T Consensus 21 pp~v~k~lv~~y~~~~~~~~lE~lI~~LD---------------~~~LDidq~i~lC~~~~LydalIYv~n~~l~D 81 (196)
T PF12816_consen 21 PPEVFKALVEHYASKGRLERLEQLILHLD---------------PSSLDIDQVIKLCKKHGLYDALIYVWNRALND 81 (196)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCC---------------HHhcCHHHHHHHHHHCCCCCeeeeeeeccccC
Confidence 34445556666666666666666655551 12222344555555555555555555444444
No 497
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=32.66 E-value=1.2e+02 Score=19.77 Aligned_cols=35 Identities=9% Similarity=0.146 Sum_probs=26.1
Q ss_pred CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC
Q 036589 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV 118 (176)
Q Consensus 83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 118 (176)
..+|.+. ..++-.+..+|+++.|+.+.+-..+.|.
T Consensus 45 g~qd~Vl-~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 45 GAQDDVL-MTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred CCcCchH-HhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 3455444 4466667899999999999998887774
No 498
>PRK13342 recombination factor protein RarA; Reviewed
Probab=32.57 E-value=2.5e+02 Score=22.16 Aligned_cols=100 Identities=12% Similarity=0.058 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhc--CCC-CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC------------------CccHhHHH
Q 036589 68 DEMQQILHQLKHD--TRV-IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV------------------QRTVKSLN 126 (176)
Q Consensus 68 ~~a~~~~~~m~~~--~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------------------~p~~~~~~ 126 (176)
++...+++..... .++ ..+......++... .|+...++.+++.....+- ..+...+.
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~ 231 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEHY 231 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHHH
Confidence 4555555554322 133 44444444444432 5777777666665422110 11112344
Q ss_pred HHHHHHHh---cCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589 127 TLLNALLT---CGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS 170 (176)
Q Consensus 127 ~ll~~~~~---~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 170 (176)
.++.++.+ ..+.+.|+..+..|.+.|.. |....-..++.++-.
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d-~~~i~rrl~~~a~ed 277 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGED-PLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHh
Confidence 55555555 57899999999999999988 776655555555433
No 499
>PRK10941 hypothetical protein; Provisional
Probab=31.56 E-value=2.2e+02 Score=21.18 Aligned_cols=82 Identities=11% Similarity=0.001 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-hHHHHHHHHHHHhccCHHHHHHHHHhccc-CCCCccHhHHHHH
Q 036589 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE-EIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVKSLNTL 128 (176)
Q Consensus 51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l 128 (176)
....+.+-.+|.+.++++.|.++.+.+..- .|+ ..-+-----.|.+.|++..|..=++...+ .--.|+....-..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l---~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQF---DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 345677778889999999999999999965 343 33444455568899999999887777653 3235666666666
Q ss_pred HHHHHhc
Q 036589 129 LNALLTC 135 (176)
Q Consensus 129 l~~~~~~ 135 (176)
|..+...
T Consensus 258 l~~l~~~ 264 (269)
T PRK10941 258 IHSIEQK 264 (269)
T ss_pred HHHHhhc
Confidence 6665543
No 500
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.31 E-value=2.9e+02 Score=22.48 Aligned_cols=97 Identities=10% Similarity=0.137 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC-C--CCc----------cHhHHHHHHHHHHh
Q 036589 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF-N--VQR----------TVKSLNTLLNALLT 134 (176)
Q Consensus 68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--~~p----------~~~~~~~ll~~~~~ 134 (176)
++....++...+..|+..+......++.. ..|++..++..++.+... + +.. .......++++. +
T Consensus 179 ~el~~~L~~i~~~egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~si-~ 255 (472)
T PRK14962 179 ELIIKRLQEVAEAEGIEIDREALSFIAKR--ASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINAI-F 255 (472)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHH-H
Confidence 33444455544333666666666656553 357888888777765421 1 111 112233444443 5
Q ss_pred cCcHHHHHHHHHHHHhccccccchHHHHHHHHHh
Q 036589 135 CGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMN 168 (176)
Q Consensus 135 ~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~ 168 (176)
.++.++|..++.+|...|.. |....-..+..++
T Consensus 256 ~~d~~~Al~~l~~ll~~Ged-p~~i~r~l~~~~~ 288 (472)
T PRK14962 256 NGDVKRVFTVLDDVYYSGKD-YEVLIQQAIEDLV 288 (472)
T ss_pred cCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 69999999999999999987 7765544444443
Done!