BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036592
(519 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WAU|A Chain A, Structure Of Dbl6 Epsilon Domain From Var2csa
pdb|2WAU|B Chain B, Structure Of Dbl6 Epsilon Domain From Var2csa
Length = 302
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 145 RYLNVTLIVPELDKTSFWNDPSEFKDIFDVDHFIASLRDEVRILKELPPRLKTRVELGML 204
R N+ L + E D + DP FKD +S EV LK++ KT+V M
Sbjct: 39 RRKNLFLKIDESDICKYKRDPKLFKDFI-----YSSAISEVERLKKVYGEAKTKVVHAMK 93
Query: 205 YSLPPI 210
YS I
Sbjct: 94 YSFADI 99
>pdb|4B5W|A Chain A, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase R70a Mutant, Hpai, In Complex With Pyruvate
pdb|4B5W|B Chain B, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase R70a Mutant, Hpai, In Complex With Pyruvate
pdb|4B5W|C Chain C, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase R70a Mutant, Hpai, In Complex With Pyruvate
pdb|4B5W|D Chain D, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase R70a Mutant, Hpai, In Complex With Pyruvate
pdb|4B5W|E Chain E, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase R70a Mutant, Hpai, In Complex With Pyruvate
pdb|4B5W|F Chain F, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase R70a Mutant, Hpai, In Complex With Pyruvate
Length = 256
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 121 YLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWNDPSEFKDIFDV 174
+L++ N ++ + + AIA Y + ++ P WNDP + K + DV
Sbjct: 38 WLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVAPS------WNDPVQIKQLLDV 85
>pdb|4B5X|A Chain A, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase (Hpai), Mutant D42a
pdb|4B5X|B Chain B, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase (Hpai), Mutant D42a
Length = 262
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 121 YLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWNDPSEFKDIFDV 174
+L+++ N ++ + + AIA Y + ++ P WNDP + K + DV
Sbjct: 38 WLLIAGEHAPNNVQTVLTQLQAIAPYPSQPVVRPS------WNDPVQIKQLLDV 85
>pdb|1Y9M|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P212121
pdb|1Y9G|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori Complexed With Fructose
pdb|1Y4W|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P21
Length = 518
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 341 PLTPEETALVLTALGIDHNVQIYIAAGEIYGGQRRMAALAEAFPN 385
PLTP+ T +V ++ +D ++ E++GGQ A+ FP+
Sbjct: 450 PLTPDSTGVVKLSIFVDR------SSVEVFGGQGETTLTAQIFPS 488
>pdb|4B5V|A Chain A, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With
4-hydroxyl-2-ketoheptane-1,7-dioate
Length = 251
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 121 YLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWNDPSEFKDIFDV 174
+L++ N ++ + + AIA Y + ++ P WNDP + K + DV
Sbjct: 38 WLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPS------WNDPVQIKQLLDV 85
>pdb|4B5S|A Chain A, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With Pyruvate
pdb|4B5S|B Chain B, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With Pyruvate
pdb|4B5T|A Chain A, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With Ketobutyrate
pdb|4B5T|B Chain B, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With Ketobutyrate
pdb|4B5U|A Chain A, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With Pyruvate And Succinic
Semialdehyde
pdb|4B5U|B Chain B, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With Pyruvate And Succinic
Semialdehyde
pdb|4B5V|B Chain B, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With
4-hydroxyl-2-ketoheptane-1,7-dioate
Length = 251
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 121 YLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWNDPSEFKDIFDV 174
+L++ N ++ + + AIA Y + ++ P WNDP + K + DV
Sbjct: 38 WLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPS------WNDPVQIKQLLDV 85
>pdb|2V5J|A Chain A, Apo Class Ii Aldolase Hpch
pdb|2V5J|B Chain B, Apo Class Ii Aldolase Hpch
pdb|2V5K|A Chain A, Class Ii Aldolase Hpch - Magnesium - Oxamate Complex
pdb|2V5K|B Chain B, Class Ii Aldolase Hpch - Magnesium - Oxamate Complex
Length = 287
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 121 YLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWNDPSEFKDIFDV 174
+L++ N ++ + + AIA Y + ++ P WNDP + K + DV
Sbjct: 63 WLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPS------WNDPVQIKQLLDV 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,253,957
Number of Sequences: 62578
Number of extensions: 611329
Number of successful extensions: 1455
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1454
Number of HSP's gapped (non-prelim): 8
length of query: 519
length of database: 14,973,337
effective HSP length: 103
effective length of query: 416
effective length of database: 8,527,803
effective search space: 3547566048
effective search space used: 3547566048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)