Query 036592
Match_columns 519
No_of_seqs 206 out of 386
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 05:15:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 1E-14 3.5E-19 150.4 16.4 298 117-444 20-383 (408)
2 3zy2_A Putative GDP-fucose pro 99.3 3.1E-11 1E-15 124.2 16.5 273 117-441 6-348 (362)
3 2hhc_A NODZ, nodulation fucosy 97.9 0.0002 7E-09 71.2 14.7 263 118-434 3-294 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 97.9 0.0013 4.5E-08 70.9 21.8 254 118-441 144-421 (526)
5 1wgl_A TOLL-interacting protei 54.1 8.1 0.00028 30.2 2.8 49 373-425 10-58 (59)
6 3l32_A Phosphoprotein; antipar 31.0 21 0.00073 26.8 1.7 26 261-286 2-27 (45)
7 2dhy_A CUE domain-containing p 28.5 16 0.00055 29.3 0.7 43 373-419 19-61 (67)
8 1p3q_Q VPS9P, vacuolar protein 26.1 18 0.0006 28.1 0.5 39 374-416 14-52 (54)
9 2g7j_A Putative cytoplasmic pr 24.6 27 0.00094 30.9 1.5 26 342-371 3-28 (124)
10 1l2m_A REP protein; A+B fold, 20.6 1E+02 0.0035 27.2 4.4 29 339-368 17-45 (118)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.60 E-value=1e-14 Score=150.39 Aligned_cols=298 Identities=14% Similarity=0.239 Sum_probs=165.5
Q ss_pred cCCcEEEEEe-cC-cchhhHHHHhHHHHHHHHhCCc----EEecccCCCCccCCC------CCCCccccHHHHHHhcccc
Q 036592 117 KNNGYLMVSC-NG-GLNQMRAAICDMVAIARYLNVT----LIVPELDKTSFWNDP------SEFKDIFDVDHFIASLRDE 184 (519)
Q Consensus 117 ~snGYl~V~~-nG-GLNQqR~~IcDaVavARlLNAT----LViP~L~~~s~W~D~------S~F~DIFDvdhFI~sL~~d 184 (519)
..++||+-.. .| |.|+||...-.|.++|+.||.| ||||-...-.-|+.+ -.|++.||++++ +..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NKN 95 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HTT
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hhh
Confidence 5689999864 56 8999999999999999999999 999966433345332 379999999875 345
Q ss_pred cEEeccCChhhhhhhh---------------------------cCcccccCC------CCcCChhHHHh-----------
Q 036592 185 VRILKELPPRLKTRVE---------------------------LGMLYSLPP------ISWSDISYYHN----------- 220 (519)
Q Consensus 185 VrIVk~LP~~~~~~~~---------------------------~~~~~~~~p------~~ws~~~yY~~----------- 220 (519)
|+|+.- +++.+... ........+ ..+..+.|-..
T Consensus 96 vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~ 173 (408)
T 4ap5_A 96 IPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLS 173 (408)
T ss_dssp SCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEE
T ss_pred CCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEE
Confidence 555522 11111100 000000000 00000000000
Q ss_pred ------hchhhhccc---eeEEEcccCcccccCCCChhhhhhhhhhcccccccchHHHHHHHHHHHHHHhcCCeEEEecc
Q 036592 221 ------QILPLLQKH---KVVHLNKTDARLANNGLPLEFQKLRCRVNFKALKFTSQIEELGRRVVKILREKGPFLVLHLR 291 (519)
Q Consensus 221 ------~vlP~l~k~---~Vi~l~~~d~RLa~d~lP~eiQrLRCrvnf~ALrF~~~I~~lg~~lV~RLr~~G~fiALHLR 291 (519)
.+-|.+.+. .-+-+..+...|+.---..+...+| ..|+|.+.|.+.|++.++..- .++|+++|+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L-~~~~~~~h~r 247 (408)
T 4ap5_A 174 VQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHL-NSTDDADRIP 247 (408)
T ss_dssp ECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHH-CCCTTTTTCC
T ss_pred EeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHh-Ccccceeecc
Confidence 011112111 1111112222221110111222221 479999999999999988765 3678888888
Q ss_pred chhhhHhhhcCCCCCChHHHHHHHHHHhhCcccccccCChHHHhhCC-CCCCCHHHHHHHHHHcCCCCCceEEEEecccc
Q 036592 292 YEMDMLAFSGCTHGCNIEEVEELTQMRYAYPWWKEKVINSEMKRKEG-LCPLTPEETALVLTALGIDHNVQIYIAAGEIY 370 (519)
Q Consensus 292 ~E~DMlAfsgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~~R~~G-~CPLTPeEvgl~L~alGf~~~T~IYlAsgeiy 370 (519)
...|+... |.......-. -+.-.+|+... ...... .+|-.++-+..+.+.+-=-+.+.||||+-+.
T Consensus 248 ~~~dw~~~--~~~~~~~~~~------~y~~~H~Rr~d----~~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~~- 314 (408)
T 4ap5_A 248 FQEDWMKM--KVKLGSALGG------PYLGVHLRRKD----FIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAV- 314 (408)
T ss_dssp CCSSGGGC--CCCTTCBCCE------EEEEEEECCTT----TTTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECCC-
T ss_pred cchhHhhh--hcccccccCC------Ccccccccccc----chhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCCc-
Confidence 88877664 4331110000 00001222110 001111 2333322222333333222445899998653
Q ss_pred CcccchhHHHHhCCccccccccchhhhhhhhccchhhhhhhhhhhccCcccccCCCCchhhhhhHhhhhcCCcc
Q 036592 371 GGQRRMAALAEAFPNLVRKETLLKSDLKFFQNHSSQMAALDYLVSLESDIFIPTYDGNMAKVVEGHRRFLGFKK 444 (519)
Q Consensus 371 GGe~~l~~Lr~~FPnl~tKe~L~~eEL~pf~~~ss~~AALDY~Vcl~SDvFV~t~~GNfa~~V~GhR~y~G~~k 444 (519)
+..+..|++.+|.++.-..- .+++..+ ...+.|.||-+||.+||+||+|..++|+..|.-.|.+.|+..
T Consensus 315 --~~~~~~l~~~~~~~~~~~~~-~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 315 --RKEYEELKKLLPEMVRFEPT-WEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp --HHHHHHHHHHCTTEECCCCC-HHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred --hhHHHHHHHhCCCcEEecCc-chhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 44578899999986543222 3334443 234679999999999999999999999999999999999763
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.31 E-value=3.1e-11 Score=124.22 Aligned_cols=273 Identities=17% Similarity=0.313 Sum_probs=162.1
Q ss_pred cCCcEEEE-EecCcchhhHHHHhHHHHHHHHhCCcEEecccCCCCccCCC--CCCCccccHHHHHHhcccccEEe-----
Q 036592 117 KNNGYLMV-SCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWNDP--SEFKDIFDVDHFIASLRDEVRIL----- 188 (519)
Q Consensus 117 ~snGYl~V-~~nGGLNQqR~~IcDaVavARlLNATLViP~L~~~s~W~D~--S~F~DIFDvdhFI~sL~~dVrIV----- 188 (519)
.+||||+- .|-|-+.||-....-+.+.|+.||.|||||-+-.-.. ..+ -.|++-|+++. |+..-|||
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~~~~vpf~~yF~v~~----l~~yhrvi~me~F 80 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PETKMIPFEFLFQVGT----VAKYTRVVTMQEF 80 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SSCEEECHHHHBCHHH----HTTTSCEECHHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Ccccccchhheeecch----hhhhceeeeHHHH
Confidence 46999999 7999999999999999999999999999987642222 111 25788888765 33333433
Q ss_pred -ccC-----Chhhh------------h---h--h--hcCcc-------cccC--------C----CCcCC---hhHHHhh
Q 036592 189 -KEL-----PPRLK------------T---R--V--ELGML-------YSLP--------P----ISWSD---ISYYHNQ 221 (519)
Q Consensus 189 -k~L-----P~~~~------------~---~--~--~~~~~-------~~~~--------p----~~ws~---~~yY~~~ 221 (519)
++| |++-+ . . . +-+++ +.+. + .+++- .+-+.+.
T Consensus 81 m~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~~ 160 (362)
T 3zy2_A 81 TKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLEK 160 (362)
T ss_dssp HHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHHH
T ss_pred HHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHHHh
Confidence 111 11100 0 0 0 00111 1111 1 12110 0011222
Q ss_pred chhhhccceeEEEcccCc--ccccCCCChhhhhhhhhhcccccccchHHHHHHHHHHHHHHhcCCeEEEeccchhhhHhh
Q 036592 222 ILPLLQKHKVVHLNKTDA--RLANNGLPLEFQKLRCRVNFKALKFTSQIEELGRRVVKILREKGPFLVLHLRYEMDMLAF 299 (519)
Q Consensus 222 vlP~l~k~~Vi~l~~~d~--RLa~d~lP~eiQrLRCrvnf~ALrF~~~I~~lg~~lV~RLr~~G~fiALHLR~E~DMlAf 299 (519)
--| .+|-|+.|++.-. ....++ -.||| -|+++++|.+.|++.|+.--. +||||+|||--.|+.-.
T Consensus 161 ~p~--~~~pVlAf~gaPa~FPv~~e~--r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~-rpyVgIHLR~G~DW~~a 227 (362)
T 3zy2_A 161 FPS--EEYPVLAFSSAPAPFPSKGKV--WSIQK--------YLRWSSRITEQAKKFISANLA-KPFVAVHLRNDADWVRV 227 (362)
T ss_dssp SCT--TTCSEEEESSCSSCSSCCGGG--GGGGG--------GCCBCHHHHHHHHHHHHHHCC-SSEEEEEECCCHHHHHH
T ss_pred CCc--ccCceEeecCCCCCCCcChhh--HhHHH--------hccccHHHHHHHHHHHHHhcC-CCeEEEEEecCCcHHHH
Confidence 222 2678888875222 111110 24553 699999999999998888443 49999999999999876
Q ss_pred hcCCCCCChHHHHHHHHHHhhCcccccccCChH---HHhhCC-----CCCCCHHH----HHHHHHHcCCCCCceEEEEec
Q 036592 300 SGCTHGCNIEEVEELTQMRYAYPWWKEKVINSE---MKRKEG-----LCPLTPEE----TALVLTALGIDHNVQIYIAAG 367 (519)
Q Consensus 300 sgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~---~~R~~G-----~CPLTPeE----vgl~L~alGf~~~T~IYlAsg 367 (519)
|.+--.. + . ++.-. .++ -....| .|==+.++ +..+++.++ -..||||+-
T Consensus 228 --C~hlk~~-~------~----~~lfa---SPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~---lksVFIATD 288 (362)
T 3zy2_A 228 --CEHIDTT-T------N----RPLFA---SEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIG---AKSVFVASD 288 (362)
T ss_dssp --HHTCCTT-T------C----CCCTT---THHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHT---CSEEEEEES
T ss_pred --Hhhhccc-c------C----ccccc---CCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcC---CcEEEEecC
Confidence 7641110 0 0 00000 000 000111 13112333 445556555 449999996
Q ss_pred cccCcccchhHHHHhCCccccc-cccchhhhhhhhccchhhhhhhhhhhccCcccccCCCCchhhhhhHhhhhcC
Q 036592 368 EIYGGQRRMAALAEAFPNLVRK-ETLLKSDLKFFQNHSSQMAALDYLVSLESDIFIPTYDGNMAKVVEGHRRFLG 441 (519)
Q Consensus 368 eiyGGe~~l~~Lr~~FPnl~tK-e~L~~eEL~pf~~~ss~~AALDY~Vcl~SDvFV~t~~GNfa~~V~GhR~y~G 441 (519)
.. ..++.|+++|+....+ ..+-++ .|+||.+||.+||+||+|..++|+..|.-.|-..|
T Consensus 289 a~----~~~~ELk~~L~~~~v~vv~~~pe-----------~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 289 KD----HMIDEINEALKPYEIEAHRQEPD-----------DMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp SC----CCHHHHHHHHGGGTCCEECCSSC-----------CHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred CH----HHHHHHHHHhhccCceEEEeCCc-----------hhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 53 4578899988642111 011111 79999999999999999999999999999999998
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.87 E-value=0.0002 Score=71.20 Aligned_cols=263 Identities=14% Similarity=0.172 Sum_probs=129.5
Q ss_pred CCcEEEEEecCcchhhHHHHhHHHHHHHHhCCcEEecccCCCCccCCCCCCCccccHHHHHHhcccc--cEEecc-CChh
Q 036592 118 NNGYLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWNDPSEFKDIFDVDHFIASLRDE--VRILKE-LPPR 194 (519)
Q Consensus 118 snGYl~V~~nGGLNQqR~~IcDaVavARlLNATLViP~L~~~s~W~D~S~F~DIFDvdhFI~sL~~d--VrIVk~-LP~~ 194 (519)
+..||.+...|||.+|=-+++.|.++|...|.+|+|--.. ..|-. ..|.+.| ...|. .+.+- ..+... .|..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~ 77 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQ 77 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH-HHHBC-CCSEETTEEEECSGGGGT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC-ccccc-chhhhcccceeccccccc
Confidence 4679999999999999999999999999999998886544 22322 3466666 22232 11100 011110 0000
Q ss_pred hhhhhhcCcccccCCCCcCChh---HH--Hhhch-------hhhc---cceeEEEcccCcccccCCCChhhhhhhhhhcc
Q 036592 195 LKTRVELGMLYSLPPISWSDIS---YY--HNQIL-------PLLQ---KHKVVHLNKTDARLANNGLPLEFQKLRCRVNF 259 (519)
Q Consensus 195 ~~~~~~~~~~~~~~p~~ws~~~---yY--~~~vl-------P~l~---k~~Vi~l~~~d~RLa~d~lP~eiQrLRCrvnf 259 (519)
... .....|.-|.... .| .+++. .++. ...-..+.+ +..+.- ..-.++ -...|
T Consensus 78 ----~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~w-~~~~~~----~~~i~ 145 (330)
T 2hhc_A 78 ----LSF--PGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVC-DACLMW-RCSEEA----ERLIF 145 (330)
T ss_dssp ----CCC--CSSEESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEE-CSCCTT-SSCHHH----HHHHH
T ss_pred ----ccC--CCCcCchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEc-cccccc-chhhhh----HHHHH
Confidence 000 0000000111110 01 11111 1111 111011211 000100 000111 23455
Q ss_pred cccccchHHHHHHHHHHHHHHhcCCeEEEeccchhhhHhhhcCCCCCChHHH-HHHHHHHhhCcccccccCChHHHhhCC
Q 036592 260 KALKFTSQIEELGRRVVKILREKGPFLVLHLRYEMDMLAFSGCTHGCNIEEV-EELTQMRYAYPWWKEKVINSEMKRKEG 338 (519)
Q Consensus 260 ~ALrF~~~I~~lg~~lV~RLr~~G~fiALHLR~E~DMlAfsgC~~g~~~~E~-~eL~~~R~~~~~wk~k~i~~~~~R~~G 338 (519)
.-|+++++|++..+++.+.+-...++|+||.|.=.+. ..|.++-.-.+. .-++.+..
T Consensus 146 ~yl~p~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~---~~~~~~~~~~~~~~~l~~~~~------------------- 203 (330)
T 2hhc_A 146 RNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHGNGE---DIMEHAPYWADSELALHQVCM------------------- 203 (330)
T ss_dssp HHSCBCHHHHHHHHHHHHHHTTTSEEEEEEECC---------------CHHHHHHHHHHHH-------------------
T ss_pred hcCCccHHHHHHHHHHHHHhccCCceEEEEEecCCCC---cccccCcchHHHhHHHHHHHH-------------------
Confidence 7889999999999988876434469999999964321 122221000000 00111111
Q ss_pred CCCCCHHHHHHHHHHc-C-CC-CCceEEEEeccccCcccchhHHHHhCCccccc-cccc--h-hhhh-hhhc-cchhhhh
Q 036592 339 LCPLTPEETALVLTAL-G-ID-HNVQIYIAAGEIYGGQRRMAALAEAFPNLVRK-ETLL--K-SDLK-FFQN-HSSQMAA 409 (519)
Q Consensus 339 ~CPLTPeEvgl~L~al-G-f~-~~T~IYlAsgeiyGGe~~l~~Lr~~FPnl~tK-e~L~--~-eEL~-pf~~-~ss~~AA 409 (519)
-++.+ . .+ .+..|||||-+. ..++.|++.||++.+- ..+. . ..+- +..+ ...+.+.
T Consensus 204 -----------~i~~~~~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 268 (330)
T 2hhc_A 204 -----------AIRKAKALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASAL 268 (330)
T ss_dssp -----------HHHHHHTSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHH
T ss_pred -----------HHHHHHhccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHH
Confidence 11111 0 12 468999999885 4578899999984332 1111 1 1110 1111 2345688
Q ss_pred hhhhhhccCcccc-cCCCCchhhhhh
Q 036592 410 LDYLVSLESDIFI-PTYDGNMAKVVE 434 (519)
Q Consensus 410 LDY~Vcl~SDvFV-~t~~GNfa~~V~ 434 (519)
+|.+....+|.+| .+..++|+...+
T Consensus 269 ~Dm~LLS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 269 IDMYLLARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HHHHHHTTCSEEEEESTTCGGGHHHH
T ss_pred HHHHHHHcCCeeEECCCCCCHHHHHH
Confidence 9999999999999 545888888766
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.86 E-value=0.0013 Score=70.94 Aligned_cols=254 Identities=16% Similarity=0.200 Sum_probs=144.1
Q ss_pred CCcEEEEEe--cCcchhhHHHHhHHHHHHHHhCCcEEecccCCCCccCC-CCCCCccccHHHHHHhcccccEEeccCChh
Q 036592 118 NNGYLMVSC--NGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWND-PSEFKDIFDVDHFIASLRDEVRILKELPPR 194 (519)
Q Consensus 118 snGYl~V~~--nGGLNQqR~~IcDaVavARlLNATLViP~L~~~s~W~D-~S~F~DIFDvdhFI~sL~~dVrIVk~LP~~ 194 (519)
+..||.... ..|+..+-..++-|..+|-.+|.|||+-.=. |.- ...|+++|.. +...+... |
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~~-------~-- 208 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTDR-------S-- 208 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCCC-------C--
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccCC-------C--
Confidence 457899876 5799999999999999999999999994432 332 2468888874 11111110 0
Q ss_pred hhhhhhcCcccccCCCCcCChhHHHhhchhhhccceeEEEcccC-----cccccCCCChhh----hhhh-------h-hh
Q 036592 195 LKTRVELGMLYSLPPISWSDISYYHNQILPLLQKHKVVHLNKTD-----ARLANNGLPLEF----QKLR-------C-RV 257 (519)
Q Consensus 195 ~~~~~~~~~~~~~~p~~ws~~~yY~~~vlP~l~k~~Vi~l~~~d-----~RLa~d~lP~ei----QrLR-------C-rv 257 (519)
......|..... -..+.||.+.-.+ .+...-.+|.++ +++. + .+
T Consensus 209 -----------~~~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~ 269 (526)
T 2de0_X 209 -----------GISTGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQF 269 (526)
T ss_dssp -----------CSCCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHH
T ss_pred -----------ccccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHHH
Confidence 001122332210 0123333322111 011111334332 2221 0 11
Q ss_pred cccccccchHHHHHHHHHHHHHHhcCCeEEEeccchhhhHhhhcCCCCCChHHHHHHHHHHhhCcccccccCChHHHhhC
Q 036592 258 NFKALKFTSQIEELGRRVVKILREKGPFLVLHLRYEMDMLAFSGCTHGCNIEEVEELTQMRYAYPWWKEKVINSEMKRKE 337 (519)
Q Consensus 258 nf~ALrF~~~I~~lg~~lV~RLr~~G~fiALHLR~E~DMlAfsgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~~R~~ 337 (519)
.-.-+|+.++|++..+++.+.+.-.+|.|+||.|-- |-+..- ...-+.+ .|-...
T Consensus 270 ~~yl~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrG-Dk~~~E---~~~~~~~-----~Y~~~v---------------- 324 (526)
T 2de0_X 270 VKYLIRPQPWLEKEIEEATKKLGFKHPVIGVHVRRT-DKVGTE---AAFHPIE-----EYMVHV---------------- 324 (526)
T ss_dssp HHHHTCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC------C---CCSCSHH-----HHHHHH----------------
T ss_pred HHHHcCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCC-CCCccc---cccCCHH-----HHHHHH----------------
Confidence 112489999999999999888766789999999963 332210 1111110 111100
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCceEEEEeccccCcccchhHHHHhCCcc--ccccccc-hhhh-hhhhccchhhhhhhhh
Q 036592 338 GLCPLTPEETALVLTALGIDHNVQIYIAAGEIYGGQRRMAALAEAFPNL--VRKETLL-KSDL-KFFQNHSSQMAALDYL 413 (519)
Q Consensus 338 G~CPLTPeEvgl~L~alGf~~~T~IYlAsgeiyGGe~~l~~Lr~~FPnl--~tKe~L~-~eEL-~pf~~~ss~~AALDY~ 413 (519)
++.-..|+.......+.||||+-+. ..++.+++.||+. ++-.... ...+ ..+...+...+.+|.+
T Consensus 325 -------~~~~~~l~~~~~~~~~~ifLATDDp----~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~ 393 (526)
T 2de0_X 325 -------EEHFQLLARRMQVDKKRVYLATDDP----SLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIH 393 (526)
T ss_dssp -------HHHHHHHHTTSCCSSCEEEEEESCH----HHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHH
T ss_pred -------HHHHHHHHhhcCCCCCeEEEEcCCH----HHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHH
Confidence 0111112333467789999999884 6678888899984 3322222 1111 1122223357899999
Q ss_pred hhccCcccccCCCCchhhhhhHhhhhcC
Q 036592 414 VSLESDIFIPTYDGNMAKVVEGHRRFLG 441 (519)
Q Consensus 414 Vcl~SDvFV~t~~GNfa~~V~GhR~y~G 441 (519)
+.+++|+||+|.++||++++...+.-.+
T Consensus 394 lLs~cd~~Vgt~sS~~srla~~l~~~~~ 421 (526)
T 2de0_X 394 FLSQADFLVCTFSSQVCRVAYEIMQTLH 421 (526)
T ss_dssp HHHHSSEEEECTTSHHHHHHHHHHTTSS
T ss_pred HHhcCCeeecCCCCHHHHHHHHHhcCcC
Confidence 9999999999999999999887765443
No 5
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=54.12 E-value=8.1 Score=30.16 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=35.4
Q ss_pred ccchhHHHHhCCccccccccchhhhhhhhccchhhhhhhhhhhccCcccccCC
Q 036592 373 QRRMAALAEAFPNLVRKETLLKSDLKFFQNHSSQMAALDYLVSLESDIFIPTY 425 (519)
Q Consensus 373 e~~l~~Lr~~FPnl~tKe~L~~eEL~pf~~~ss~~AALDY~Vcl~SDvFV~t~ 425 (519)
+..++.|++|||++ +++.+. .=|+ .+..+..+|||-+..+..+-|=|++
T Consensus 10 ee~l~~L~emFP~l-d~~~I~-~vL~--a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQEVIR-SVLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHH-HHHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-CHHHHH-HHHH--HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 56789999999984 444432 1122 4466789999999999988877764
No 6
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=31.00 E-value=21 Score=26.76 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=21.3
Q ss_pred ccccchHHHHHHHHHHHHHHhcCCeE
Q 036592 261 ALKFTSQIEELGRRVVKILREKGPFL 286 (519)
Q Consensus 261 ALrF~~~I~~lg~~lV~RLr~~G~fi 286 (519)
++-|+.-+.++|.++|++|++...|.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtGe~Ff 27 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSGERFL 27 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CccHHHHHHHHHHHHHHHHHccccHH
Confidence 45578889999999999999865553
No 7
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.46 E-value=16 Score=29.27 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=28.5
Q ss_pred ccchhHHHHhCCccccccccchhhhhhhhccchhhhhhhhhhhccCc
Q 036592 373 QRRMAALAEAFPNLVRKETLLKSDLKFFQNHSSQMAALDYLVSLESD 419 (519)
Q Consensus 373 e~~l~~Lr~~FPnl~tKe~L~~eEL~pf~~~ss~~AALDY~Vcl~SD 419 (519)
+..++.|++|||++ +++.|. .-|. .+..+..+|||-+..+..|
T Consensus 19 ~~~v~~L~~MFP~l-D~~vI~-~vL~--a~~G~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 19 NQAMDDFKTMFPNM-DYDIIE-CVLR--ANSGAVDATIDQLLQMNLE 61 (67)
T ss_dssp HHHHHHHHHHCSSS-CHHHHH-HHHH--HHTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCC-CHHHHH-HHHH--HcCCCHHHHHHHHHhcCCC
Confidence 35688999999984 444442 2233 5567788999987766543
No 8
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=26.06 E-value=18 Score=28.12 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=21.1
Q ss_pred cchhHHHHhCCccccccccchhhhhhhhccchhhhhhhhhhhc
Q 036592 374 RRMAALAEAFPNLVRKETLLKSDLKFFQNHSSQMAALDYLVSL 416 (519)
Q Consensus 374 ~~l~~Lr~~FPnl~tKe~L~~eEL~pf~~~ss~~AALDY~Vcl 416 (519)
..+..|++|||++ ++|.+- .=|. .+.+..-+|||....+
T Consensus 14 ~~~~~L~~MFP~l-D~evI~-~Vl~--a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 14 DTLNTLQNMFPDM-DPSLIE-DVCI--AAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHSTTS-CHHHHH-HHHH--HSCC--CGGGC-----
T ss_pred HHHHHHHHHcccC-CHHHHH-HHHH--HcCCCHHHHHHHHHhh
Confidence 4578999999995 455442 1122 5567777888876544
No 9
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=24.56 E-value=27 Score=30.85 Aligned_cols=26 Identities=38% Similarity=0.691 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHcCCCCCceEEEEeccccC
Q 036592 342 LTPEETALVLTALGIDHNVQIYIAAGEIYG 371 (519)
Q Consensus 342 LTPeEvgl~L~alGf~~~T~IYlAsgeiyG 371 (519)
|-|.||+.+|...||..+. + +-+.||
T Consensus 3 LRPDEVArVLEk~GF~~D~---v-t~kaYG 28 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV---V-TNKTYG 28 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE---E-ETTEEE
T ss_pred cChHHHHHHHHHcCceEEE---e-eccccc
Confidence 6799999999999998654 2 345666
No 10
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=20.56 E-value=1e+02 Score=27.20 Aligned_cols=29 Identities=28% Similarity=0.411 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEEecc
Q 036592 339 LCPLTPEETALVLTALGIDHNVQIYIAAGE 368 (519)
Q Consensus 339 ~CPLTPeEvgl~L~alGf~~~T~IYlAsge 368 (519)
.||||+||+...|+.|--+.+ ..||....
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeehh
Confidence 599999999999999985543 56665554
Done!