Query 036592
Match_columns 519
No_of_seqs 206 out of 386
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 05:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036592.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036592hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgla_ a.5.2.4 (A:) Toll-inte 59.5 2.3 0.00017 31.7 2.3 49 373-425 10-58 (59)
2 d2ihoa2 d.3.1.18 (A:156-293) A 35.6 2.1 0.00016 36.3 -1.5 36 150-185 31-71 (138)
3 d1l5ia_ d.89.1.4 (A:) DNA-bind 29.4 25 0.0018 29.0 4.3 29 339-368 17-45 (118)
4 d1vjna_ d.157.1.4 (A:) Hypothe 21.4 68 0.0049 27.4 5.9 55 121-183 130-184 (209)
5 d2g7ja1 d.198.5.1 (A:1-112) Pu 19.2 22 0.0016 28.9 1.8 26 342-371 3-28 (112)
6 d1oqya2 a.5.2.1 (A:317-360) DN 16.7 9.2 0.00067 26.9 -0.9 26 343-368 1-30 (44)
7 d1jjcb2 a.6.1.1 (B:400-474) Do 15.9 47 0.0035 24.6 3.0 23 334-357 13-35 (75)
8 d2gh1a1 c.66.1.49 (A:13-293) M 14.9 26 0.0019 31.2 1.5 91 257-358 99-189 (281)
9 d1zq1c2 d.74.4.1 (C:277-407) G 14.5 69 0.005 25.9 4.0 30 340-369 81-110 (131)
10 d1okga1 c.46.1.2 (A:7-162) 3-m 14.1 61 0.0044 27.2 3.6 23 343-365 73-95 (156)
No 1
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.49 E-value=2.3 Score=31.73 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=36.5
Q ss_pred ccchhHHHHhCCccccccccchhhhhhhhccchhhhhhhhhhhccCcccccCC
Q 036592 373 QRRMAALAEAFPNLVRKETLLKSDLKFFQNHSSQMAALDYLVSLESDIFIPTY 425 (519)
Q Consensus 373 e~~l~~Lr~~FPnl~tKe~L~~eEL~pf~~~ss~~AALDY~Vcl~SDvFV~t~ 425 (519)
+..+..|++|||++ +++.+- .=|. .+..+..+|+|=+.-+.-+.|-|+.
T Consensus 10 Ee~i~~LkeMFP~~-D~~vI~-~VL~--a~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 10 EEDLKAIQDMFPNM-DQEVIR-SVLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHH-HHHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-CHHHHH-HHHH--HcCCCHHHHHHHHHhcCCCCcCCCC
Confidence 56799999999995 344432 1233 5577889999999999888888765
No 2
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=35.64 E-value=2.1 Score=36.31 Aligned_cols=36 Identities=28% Similarity=0.589 Sum_probs=29.8
Q ss_pred cEEecccCCCCccCCC-----CCCCccccHHHHHHhccccc
Q 036592 150 TLIVPELDKTSFWNDP-----SEFKDIFDVDHFIASLRDEV 185 (519)
Q Consensus 150 TLViP~L~~~s~W~D~-----S~F~DIFDvdhFI~sL~~dV 185 (519)
-||+|...-+++|+++ ..=+.|||-|.|--..+.-|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 3899999999999986 24578999999988877554
No 3
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=29.43 E-value=25 Score=29.05 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEEecc
Q 036592 339 LCPLTPEETALVLTALGIDHNVQIYIAAGE 368 (519)
Q Consensus 339 ~CPLTPeEvgl~L~alGf~~~T~IYlAsge 368 (519)
+|||||||+...|+.|--+.+. .||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 5999999999999999766554 5666544
No 4
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=21.41 E-value=68 Score=27.43 Aligned_cols=55 Identities=22% Similarity=0.398 Sum_probs=35.4
Q ss_pred EEEEEecCcchhhHHHHhHHHHHHHHhCCcEEecccCCCCccCCCCCCCccccHHHHHHhccc
Q 036592 121 YLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWNDPSEFKDIFDVDHFIASLRD 183 (519)
Q Consensus 121 Yl~V~~nGGLNQqR~~IcDaVavARlLNATLViP~L~~~s~W~D~S~F~DIFDvdhFI~sL~~ 183 (519)
.+++.+.|.. ...--+|+.+|+.|++-.|||-= |+.....| ++=.+|.|++.++.
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~H----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPMH----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEES----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEec----cCCccccc-CcCCHHHHHHHhhh
Confidence 4555544332 24467899999999999999952 22222333 45567888887663
No 5
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=19.22 E-value=22 Score=28.94 Aligned_cols=26 Identities=38% Similarity=0.691 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHcCCCCCceEEEEeccccC
Q 036592 342 LTPEETALVLTALGIDHNVQIYIAAGEIYG 371 (519)
Q Consensus 342 LTPeEvgl~L~alGf~~~T~IYlAsgeiyG 371 (519)
|-|.||+.+|+..||..+. + +-+.||
T Consensus 3 LRPDEVArVLe~aGF~~d~---v-t~kaYG 28 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVDV---V-TNKTYG 28 (112)
T ss_dssp CCHHHHHHHHHHTTCEEEE---E-ETTEEE
T ss_pred cChHHHHHHHHHcCceEEE---e-eccccc
Confidence 6799999999999998553 3 335565
No 6
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.73 E-value=9.2 Score=26.93 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=17.6
Q ss_pred CHHHHH--HHHHHcCCCCCce--EEEEecc
Q 036592 343 TPEETA--LVLTALGIDHNVQ--IYIAAGE 368 (519)
Q Consensus 343 TPeEvg--l~L~alGf~~~T~--IYlAsge 368 (519)
||+|-. .=|.+|||+++.. +|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 455544 3478999999864 5777655
No 7
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=15.90 E-value=47 Score=24.58 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.0
Q ss_pred HhhCCCCCCCHHHHHHHHHHcCCC
Q 036592 334 KRKEGLCPLTPEETALVLTALGID 357 (519)
Q Consensus 334 ~R~~G~CPLTPeEvgl~L~alGf~ 357 (519)
.+..|.. ++++|+..+|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 5566776 9999999999999996
No 8
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}
Probab=14.93 E-value=26 Score=31.24 Aligned_cols=91 Identities=12% Similarity=0.218 Sum_probs=56.5
Q ss_pred hcccccccchHHHHHHHHHHHHHHhcCCeEEEeccchhhhHhhhcCCCCCChHHHHHHHHHHhhCcccccccCChHHHhh
Q 036592 257 VNFKALKFTSQIEELGRRVVKILREKGPFLVLHLRYEMDMLAFSGCTHGCNIEEVEELTQMRYAYPWWKEKVINSEMKRK 336 (519)
Q Consensus 257 vnf~ALrF~~~I~~lg~~lV~RLr~~G~fiALHLR~E~DMlAfsgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~~R~ 336 (519)
+..++|...++.+.+-+++.+.|+..|.++....-...++..+. ..+....+...+.. |+. .-....+.
T Consensus 99 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~--~~~~~~~~ 167 (281)
T d2gh1a1 99 ICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYL--LDGEKQSEFIQLGV-------LQK--LFESDTQR 167 (281)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEE--ETTSCHHHHCCHHH-------HHH--HHHHHHHT
T ss_pred EEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhc--cCchhhhhhhhHHH-------HHH--HHHHHHHH
Confidence 45567777777788888888888888988887765555555542 22222222211111 111 01122345
Q ss_pred CCCCCCCHHHHHHHHHHcCCCC
Q 036592 337 EGLCPLTPEETALVLTALGIDH 358 (519)
Q Consensus 337 ~G~CPLTPeEvgl~L~alGf~~ 358 (519)
.|.-|....++..+|+..||.+
T Consensus 168 ~~~~~~i~~~l~~~l~eaGf~~ 189 (281)
T d2gh1a1 168 NGKDGNIGMKIPIYLSELGVKN 189 (281)
T ss_dssp TCCCTTGGGTHHHHHHHTTCEE
T ss_pred cCCCCCHHHHHHHHHHHcCCeE
Confidence 6777777788999999999984
No 9
>d1zq1c2 d.74.4.1 (C:277-407) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=14.54 E-value=69 Score=25.93 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHcCCCCCceEEEEeccc
Q 036592 340 CPLTPEETALVLTALGIDHNVQIYIAAGEI 369 (519)
Q Consensus 340 CPLTPeEvgl~L~alGf~~~T~IYlAsgei 369 (519)
-.++++|+..+.++||....-.|++++|+.
T Consensus 81 k~l~~e~~~~l~~~l~~~~GD~il~~Ag~~ 110 (131)
T d1zq1c2 81 YGISQEEVNKVIERLNLSEEDAFVLVAAEE 110 (131)
T ss_dssp TTBCHHHHHHHHHHTTCCSSCEEEEEEESH
T ss_pred cccCHHHHHHHHHHhCCCCCCEEEEEeCCH
Confidence 358999999999999999999999999884
No 10
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=14.13 E-value=61 Score=27.16 Aligned_cols=23 Identities=13% Similarity=-0.026 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHcCCCCCceEEEE
Q 036592 343 TPEETALVLTALGIDHNVQIYIA 365 (519)
Q Consensus 343 TPeEvgl~L~alGf~~~T~IYlA 365 (519)
+|++....|+++|++++|.|-|=
T Consensus 73 ~~~~~~~~l~~lGI~~~~~VVvY 95 (156)
T d1okga1 73 PCAEFIDWCMANGMAGELPVLCY 95 (156)
T ss_dssp CHHHHHHHHHHTTCSSSSCEEEE
T ss_pred CHHHHHHHHHhccccCCceEEEE
Confidence 78999999999999999987663
Done!