BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036593
(574 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 180/577 (31%), Positives = 260/577 (45%), Gaps = 74/577 (12%)
Query: 43 RVKALNLSGMGLGGTIP-PHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK 101
+K L +SG + G + NL FL DV+ NNF +P LG L+ + S NK
Sbjct: 176 ELKHLAISGNKISGDVDVSRCVNLEFL---DVSSNNFSTGIP-FLGDCSALQHLDISGNK 231
Query: 102 LSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GN 160
LSG I ++L+++++ +N GPIP L L+ L + N G IP + G
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 161 LSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIP-PAIFNISTIRVLNLHS 219
L LDL N+ +P G+ LESLAL +NN SG +P + + ++VL+L
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 220 NQFSGRLPSTI------------------GHSLPNI--------EYLTLAINNLIGTIPD 253
N+FSG LP ++ G LPN+ + L L N G IP
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 254 SLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTN 313
+L+N S+L+ L L N SG IP++ G+L L L + N L E L
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE--------IPQELMY 461
Query: 314 CRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDF 373
+ L L+LD N L G +P + N +L +L G IPK IG L L +L L
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 374 NDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDL-----------------CHLELNGN 416
N +G IP +G + L L L N G+IP + +++ +G
Sbjct: 521 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 580
Query: 417 KLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXXXXXXVQK 476
K H L +R +L N+L++ P ++ S Y
Sbjct: 581 KKECHGAGNLLEFQGIRSEQL--NRLSTRNPCNITSRVY-----------GGHTSPTFDN 627
Query: 477 LKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 536
+ LD+S N LSG IP IG++ L L+L N G IP+ VG L L LDLS N
Sbjct: 628 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 537 NFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFK 573
G+IP+++ AL+ L + ++S N L G IP G F+
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 144/474 (30%), Positives = 223/474 (47%), Gaps = 36/474 (7%)
Query: 114 SKLQIMSLRNNNITGPIPN--SLFNLSKLEMLQASFNVID--GNIPSGIGNLSNLFDLDL 169
+ L + L N+++GP+ SL + S L+ L S N +D G + G+ L++L LDL
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 155
Query: 170 RHNNLQDQIPTEIG-----NLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224
N++ +G L+ LA+ N +SG + + + L++ SN FS
Sbjct: 156 SANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFST 211
Query: 225 RLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRH 284
+P S +++L ++ N L G +++ ++L L++ SN F G IP L+
Sbjct: 212 GIPFLGDCSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 267
Query: 285 LNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQS 344
L LS+ N T E FLS C L+ L L N G +PP G+ S
Sbjct: 268 LQYLSLAENKFTGEIPD-----FLSGA--CDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 320
Query: 345 FYAYECKLGGSIPKE-IGNLRGLILLTLDFNDLNGTIPTSVGTLQ-QLQGLSLEDNNLEG 402
+ G +P + + +RGL +L L FN+ +G +P S+ L L L L NN G
Sbjct: 321 ALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 403 SIPYDLCH--------LELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLE 454
I +LC L L N +G IPP L++ + L L L N L+ +IPSSL SL
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 455 YILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQF 514
+ ++ + +K L L L N L+G IPS + +L +SL++N+
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 515 QGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568
G IP+ +G L +L L LS N+FSG IP L L +++ N+ G IP
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 157/343 (45%), Gaps = 53/343 (15%)
Query: 37 CDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFIS 96
C + ++ L L G G IPP L N S L+SL ++ N G +P+ LG L +L+ +
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 97 FSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPS 156
N L G IP + + L+ + L N++TG IP+ L N + L + S N + G IP
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 157 GIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLN 216
IG L NL L L +N+ IP E+G+ ++L L L TN +G IP A+F S N
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Query: 217 LHS---------------------------------NQFSGRLPSTI------GHSLPNI 237
+ N+ S R P I GH+ P
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 625
Query: 238 E------YLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIR 291
+ +L ++ N L G IP + + L L+LG N SG IP+ G+LR LN+L +
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 292 TNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPL 334
+N L A +S+LT L+ + L +N L G +P +
Sbjct: 686 SNKLDGRIPQA-----MSALT---MLTEIDLSNNNLSGPIPEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 180/577 (31%), Positives = 260/577 (45%), Gaps = 74/577 (12%)
Query: 43 RVKALNLSGMGLGGTIP-PHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK 101
+K L +SG + G + NL FL DV+ NNF +P LG L+ + S NK
Sbjct: 179 ELKHLAISGNKISGDVDVSRCVNLEFL---DVSSNNFSTGIP-FLGDCSALQHLDISGNK 234
Query: 102 LSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GN 160
LSG I ++L+++++ +N GPIP L L+ L + N G IP + G
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 161 LSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIP-PAIFNISTIRVLNLHS 219
L LDL N+ +P G+ LESLAL +NN SG +P + + ++VL+L
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 220 NQFSGRLPSTI------------------GHSLPNI--------EYLTLAINNLIGTIPD 253
N+FSG LP ++ G LPN+ + L L N G IP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 254 SLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTN 313
+L+N S+L+ L L N SG IP++ G+L L L + N L E L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE--------IPQELMY 464
Query: 314 CRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDF 373
+ L L+LD N L G +P + N +L +L G IPK IG L L +L L
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 374 NDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDL-----------------CHLELNGN 416
N +G IP +G + L L L N G+IP + +++ +G
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583
Query: 417 KLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXXXXXXVQK 476
K H L +R +L N+L++ P ++ S Y
Sbjct: 584 KKECHGAGNLLEFQGIRSEQL--NRLSTRNPCNITSRVY-----------GGHTSPTFDN 630
Query: 477 LKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 536
+ LD+S N LSG IP IG++ L L+L N G IP+ VG L L LDLS N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 537 NFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFK 573
G+IP+++ AL+ L + ++S N L G IP G F+
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 144/474 (30%), Positives = 223/474 (47%), Gaps = 36/474 (7%)
Query: 114 SKLQIMSLRNNNITGPIPN--SLFNLSKLEMLQASFNVID--GNIPSGIGNLSNLFDLDL 169
+ L + L N+++GP+ SL + S L+ L S N +D G + G+ L++L LDL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 158
Query: 170 RHNNLQDQIPTEIG-----NLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224
N++ +G L+ LA+ N +SG + + + L++ SN FS
Sbjct: 159 SANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFST 214
Query: 225 RLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRH 284
+P S +++L ++ N L G +++ ++L L++ SN F G IP L+
Sbjct: 215 GIPFLGDCSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270
Query: 285 LNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQS 344
L LS+ N T E FLS C L+ L L N G +PP G+ S
Sbjct: 271 LQYLSLAENKFTGEIPD-----FLSGA--CDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Query: 345 FYAYECKLGGSIPKE-IGNLRGLILLTLDFNDLNGTIPTSVGTLQ-QLQGLSLEDNNLEG 402
+ G +P + + +RGL +L L FN+ +G +P S+ L L L L NN G
Sbjct: 324 ALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 403 SIPYDLCH--------LELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLE 454
I +LC L L N +G IPP L++ + L L L N L+ +IPSSL SL
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 455 YILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQF 514
+ ++ + +K L L L N L+G IPS + +L +SL++N+
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 515 QGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568
G IP+ +G L +L L LS N+FSG IP L L +++ N+ G IP
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 157/343 (45%), Gaps = 53/343 (15%)
Query: 37 CDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFIS 96
C + ++ L L G G IPP L N S L+SL ++ N G +P+ LG L +L+ +
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 97 FSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPS 156
N L G IP + + L+ + L N++TG IP+ L N + L + S N + G IP
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 157 GIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLN 216
IG L NL L L +N+ IP E+G+ ++L L L TN +G IP A+F S N
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Query: 217 LHS---------------------------------NQFSGRLPSTI------GHSLPNI 237
+ N+ S R P I GH+ P
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628
Query: 238 E------YLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIR 291
+ +L ++ N L G IP + + L L+LG N SG IP+ G+LR LN+L +
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 292 TNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPL 334
+N L A +S+LT L+ + L +N L G +P +
Sbjct: 689 SNKLDGRIPQA-----MSALT---MLTEIDLSNNNLSGPIPEM 723
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 123/268 (45%), Gaps = 45/268 (16%)
Query: 21 YLLKTTNMRLSWVGISCDSRHQ--RVKALNLSGMGLG----------------------- 55
+L T +W+G+ CD+ Q RV L+LSG+ L
Sbjct: 27 WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86
Query: 56 ----GTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIG 111
G IPP + L+ L L +T N G +P+ L ++ L + FS+N LSG++P I
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 112 VLSKLQIMSLRNNNITGPIPNSLFNLSKL-EMLQASFNVIDGNIPSGIGNLSNLFDLDLR 170
L L ++ N I+G IP+S + SKL + S N + G IP NL NL +DL
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS 205
Query: 171 HNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRV------LNLHSNQFSG 224
N L+ G+ +N + + L N+L+ F++ + + L+L +N+ G
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLA-------FDLGKVGLSKNLNGLDLRNNRIYG 258
Query: 225 RLPSTIGHSLPNIEYLTLAINNLIGTIP 252
LP + L + L ++ NNL G IP
Sbjct: 259 TLPQGLTQ-LKFLHSLNVSFNNLCGEIP 285
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 137/323 (42%), Gaps = 56/323 (17%)
Query: 262 IGLDLGS-NSFSGHIPNT-------FGNLRHLNVLSIRTNNLTTESSSADQ-WSFLSSLT 312
I DLG+ + S +P T G L + + R NNL + + + SSL
Sbjct: 14 IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73
Query: 313 NCRKLSYLVLDS-NPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTL 371
N L++L + N L G +PP I + L Y + G+IP + ++ L+ L
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 372 DFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTS 431
+N L+GT+P S+ +L L G++ + GN++SG IP S +
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFD------------------GNRISGAIPDSYGSFSK 174
Query: 432 L-RELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQL 490
L + + N+LT IP + +L L +DLSRN L
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLN-------------------------LAFVDLSRNML 209
Query: 491 SGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALS 550
G+ G+ + + + LA N + + VG +L LDL N G +P+ L L
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 551 HLKQFNVSQNMLEGEIPVKGSFK 573
L NVS N L GEIP G+ +
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGNLQ 291
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 132/317 (41%), Gaps = 56/317 (17%)
Query: 108 TWIGVLSKLQIMSLRNNNIT---------GPIPNSLFNLSKLEMLQ-ASFNVIDGNIPSG 157
TW+GVL + R NN+ PIP+SL NL L L N + G IP
Sbjct: 37 TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96
Query: 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNL 217
I L+ L L + H N+ IP + ++ L +L N LSG +PP+I
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI----------- 145
Query: 218 HSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLI-GLDLGSNSFSGHIP 276
SLPN+ +T N + G IPDS + SKL + + N +G IP
Sbjct: 146 --------------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Query: 277 NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKL----SYLVLDSNPLGGILP 332
TF NL +L + + N L ++S S N +K+ + L D +G
Sbjct: 192 PTFANL-NLAFVDLSRNMLEGDAS-----VLFGSDKNTQKIHLAKNSLAFDLGKVG---- 241
Query: 333 PLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQG 392
S +L ++ G++P+ + L+ L L + FN+L G IP G LQ+
Sbjct: 242 -----LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDV 295
Query: 393 LSLEDNNLEGSIPYDLC 409
+ +N P C
Sbjct: 296 SAYANNKCLCGSPLPAC 312
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 144/552 (26%), Positives = 219/552 (39%), Gaps = 71/552 (12%)
Query: 71 LDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPI 130
L++T N P + +L + FN +S P +L L++++L++N ++ I
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQ-I 88
Query: 131 PNSLF----NLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNL------------ 174
+ F NL++L+++ S + I N N NL LDL HN L
Sbjct: 89 SDQTFVFCTNLTELDLMSNSIHKIKSN---PFKNQKNLIKLDLSHNGLSSTKLGTGVQLE 145
Query: 175 --------QDQI----PTEIGNLQN--LESLALGTNNLSGLIPPAIFNISTIRVLNLHSN 220
+++I E+ L N L L L +N L P I + L L++
Sbjct: 146 NLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNA 205
Query: 221 QFSGRLPSTIGHSLPN--IEYLTLAINNLIGTIPDSLT--NASKLIGLDLGSNSFSGHIP 276
Q + L + L N I+ L+LA N L+ T + + + L LDL N+
Sbjct: 206 QLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGN 265
Query: 277 NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLS-YLVLDSNPLGGILPPLI 335
+F L L LS+ NN+ S + L+N R LS + P I
Sbjct: 266 GSFSYLPSLRYLSLEYNNIQRLSPRS-----FYGLSNLRYLSLKRAFTKQSVSLASHPNI 320
Query: 336 GNFSASLQSFYAYECKLGGSIPKEIGN-LRGLILLTLDFNDLNGTIPTSVGTLQQLQGLS 394
+FS + Y +IP N GL+ +L + L+ T TS+ TL +S
Sbjct: 321 DDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLV--SLKYLSLSKTF-TSLQTLTNETFVS 377
Query: 395 LEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWS-L 453
L + L L L N +S + L LR L LG N++ + W L
Sbjct: 378 LAHS--------PLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGL 429
Query: 454 EYILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNI---PSTIGALVDLETLSLA 510
I EI + L+ L L R L N+ PS L +L L L+
Sbjct: 430 RNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALK-NVDISPSPFRPLRNLTILDLS 488
Query: 511 SNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKS--------LEALSHLKQFNVSQNML 562
+N + + L +LE LD NN + ++ L+ LSHL N+ N L
Sbjct: 489 NNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGL 548
Query: 563 EGEIPVKGSFKN 574
+ EIPV G FKN
Sbjct: 549 D-EIPV-GVFKN 558
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 120/441 (27%), Positives = 176/441 (39%), Gaps = 46/441 (10%)
Query: 147 FNVIDG------NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSG 200
+NV D +IP + SN+ L+L HN L+ PT L L G N++S
Sbjct: 6 YNVADCSHLKLTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISK 63
Query: 201 LIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASK 260
L P + ++VLNL N+ S T N+ L L N++ + N
Sbjct: 64 LEPELCQILPLLKVLNLQHNELSQISDQTFVFC-TNLTELDLMSNSIHKIKSNPFKNQKN 122
Query: 261 LIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYL 320
LI LDL N S T L +L L + N + S ++ FL + ++ RKL
Sbjct: 123 LIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRS--EELEFLGN-SSLRKLD-- 177
Query: 321 VLDSNPLGGILP---PLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLN 377
L SNPL P IG A L + L + E+ N + L+L N L
Sbjct: 178 -LSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSLANNQLL 235
Query: 378 GTIPTSVGTLQ--QLQGLSLEDNNLE----GSIPY--DLCHLELNGNKLSGHIPPCLASL 429
T ++ L+ L L L NNL GS Y L +L L N + P L
Sbjct: 236 ATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGL 295
Query: 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQ 489
++LR L L S+ SL S I + Q LK L L++ N
Sbjct: 296 SNLRYLSLKRAFTKQSV--SLASHPNIDDF-------------SFQWLKYLEYLNMDDNN 340
Query: 490 LSGNIPSTIGALVDLETLSLAS--NQFQGPIPESVGSLIS--LESLDLSGNNFSGKIPKS 545
+ +T LV L+ LSL+ Q E+ SL L +L+L+ N+ S +
Sbjct: 341 IPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGT 400
Query: 546 LEALSHLKQFNVSQNMLEGEI 566
L L+ ++ N +E ++
Sbjct: 401 FSWLGQLRILDLGLNEIEQKL 421
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 25/253 (9%)
Query: 68 LMSLDVTLNNFYGHLPNELGKLGRLKFISFSFN----KLSGSIPTWIGVLSKLQIMSLRN 123
L++L++T N+ LG+L+ + N KLSG W G+ + +I N
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQ--EWRGLRNIFEIYLSYN 440
Query: 124 NNITGPIPNSLF----NLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIP 179
+ + S F +L +L + + + +D + PS L NL LDL +NN+ +
Sbjct: 441 KYLQ--LSTSSFALVPSLQRLMLRRVALKNVDIS-PSPFRPLRNLTILDLSNNNIANINE 497
Query: 180 TEIGNLQNLESLALGTNNLSGLIPPA--------IFNISTIRVLNLHSNQFSGRLPSTIG 231
+ L+NLE L NNL+ L A + +S + +LNL SN +P +
Sbjct: 498 DLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGL-DEIPVGVF 556
Query: 232 HSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFG-NLRHLNVLSI 290
+L ++ + L +NNL P + + L L+L N + + FG ++LN L +
Sbjct: 557 KNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDM 616
Query: 291 RTN--NLTTESSS 301
R N + T ES S
Sbjct: 617 RFNPFDCTCESIS 629
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 114/462 (24%), Positives = 193/462 (41%), Gaps = 56/462 (12%)
Query: 22 LLKTTNMRLSWVGIS----CDSRHQRVKAL---NLSGMGLGG-TIPPHLGNLSFLMSLDV 73
L +RL + G+S D + +KAL +LS + + P G L+ L S+D
Sbjct: 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155
Query: 74 TLNNFYGHLPNELGKL--GRLKFISFSFNKLSGSIPT-WIGVLSK-----LQIMSLRNN- 124
+ N + +EL L L F S + N L + W ++ L+I+ + N
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215
Query: 125 ---NITGPIPNSLFNLSKLEMLQAS--------FNVI---DGNIPSGIGNLSNLFDLDLR 170
+ITG N++ ++ A F+ I D N +G+ S++ LDL
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR-SSVRHLDLS 274
Query: 171 HNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTI 230
H + L++L+ L L N ++ + A + + ++VLNL N G L S+
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSN 333
Query: 231 GHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS-----FSGHIPNTF--GN-L 282
+ LP + Y+ L N++ + KL LDL N+ F IP+ F GN L
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKL 393
Query: 283 RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASL 342
L +++ N + + + L L L L+L+ N + + SL
Sbjct: 394 VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453
Query: 343 QSFY--------AYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLS 394
+ + A+E +L + + + +L+ +L L+ N LN P L L+GLS
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQ---VLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 395 LEDNNL----EGSIPYDLCHLELNGNKLSGHIPPCLASLTSL 432
L N L +P +L L+++ N+L P SL+ L
Sbjct: 511 LNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVL 552
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 9/184 (4%)
Query: 93 KFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN-LSKLEMLQASFNVID 151
K + NKLS L+KL+++ L N+N +P +F L LE L + N +
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYL-NDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 152 GNIPSGI-GNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-I 209
+P G+ L NL +L L N L+ P +L L L+LG N L L P +F+ +
Sbjct: 99 A-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL-PKGVFDKL 156
Query: 210 STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPD-SLTNASKLIGLDLGS 268
++++ L L++NQ R+P L ++ L L NN + +P+ + + KL L L
Sbjct: 157 TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLD-NNQLKRVPEGAFDSLEKLKMLQLQE 214
Query: 269 NSFS 272
N +
Sbjct: 215 NPWD 218
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 78/172 (45%), Gaps = 8/172 (4%)
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXX 463
IP D L+L NKLS LT LR L L NKL ++P+ ++ LE
Sbjct: 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVT 93
Query: 464 XXXXXXXXXXV-QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV 522
V +L L L L RNQL P +L L LSL N+ Q +P+ V
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGV 152
Query: 523 -GSLISLESLDLSGNNFSGKIPK-SLEALSHLKQFNVSQNMLEGEIPVKGSF 572
L SL+ L L N ++P+ + + L+ LK + N L+ +P +G+F
Sbjct: 153 FDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVP-EGAF 201
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 14/203 (6%)
Query: 116 LQIMSLRNNNITGPIPNSLFNLSKLEMLQ----ASFNVIDGNIPSGIGNLSNLFDLDLRH 171
L I+ L +N + G + L+ LE L A V+D P+ L +L L L
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD---PTTFRGLGHLHTLHLDR 113
Query: 172 NNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIG 231
LQ+ P L L+ L L NNL L ++ + L LH N R+PS
Sbjct: 114 CGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGN----RIPSVPE 169
Query: 232 HS---LPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVL 288
H+ L +++ L L N++ P + + +L+ L L +N+ S LR L L
Sbjct: 170 HAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYL 229
Query: 289 SIRTNNLTTESSSADQWSFLSSL 311
+ N + + W++L
Sbjct: 230 RLNDNPWVCDCRARPLWAWLQKF 252
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 64/158 (40%), Gaps = 8/158 (5%)
Query: 309 SSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLIL 368
+S +CR L+ L L SN L GI + Q + +L P L L
Sbjct: 49 ASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHT 108
Query: 369 LTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGH 421
L LD L P L LQ L L+DNNL+ ++P + L HL L+GN++
Sbjct: 109 LHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTFRDLGNLTHLFLHGNRIPSV 167
Query: 422 IPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEI 459
L SL L L N + P + L ++ +
Sbjct: 168 PEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTL 205
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 80/179 (44%), Gaps = 4/179 (2%)
Query: 111 GVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLR 170
G+ + ++++L N I NS +L LE+LQ S N I L+NL L+L
Sbjct: 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120
Query: 171 HNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQFSGRLPST 229
N L L L+ L L N + IP FN I ++R L+L + +
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEG 179
Query: 230 IGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVL 288
L N+ YL LA+ NL IP+ LT KL LDL N S P +F L HL L
Sbjct: 180 AFEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 5/147 (3%)
Query: 429 LTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSR- 487
L +L L L N+LT+ + L + E+ ++ LR LDL
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 488 NQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLE 547
+LS L +L L+LA + IP ++ LI L+ LDLSGN+ S P S +
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228
Query: 548 ALSHLKQFNVSQNMLEGEIPVKGSFKN 574
L HL++ + Q+ + ++ + +F N
Sbjct: 229 GLMHLQKLWMIQSQI--QVIERNAFDN 253
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 46/155 (29%)
Query: 85 ELGKLGRLKFISF-SFNKLSG------------SIPTWIGVLSKLQIMSLRNNNITGPIP 131
+LG+L RL +IS +F LS IP + L KL + L N+++ P
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRP 224
Query: 132 NS---LFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNL 188
S L +L KL M+Q+ VI+ N FD NLQ+L
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIE----------RNAFD-----------------NLQSL 257
Query: 189 ESLALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQF 222
+ L NNL+ L+P +F + + ++LH N +
Sbjct: 258 VEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 18/184 (9%)
Query: 79 YGHLPNELGKLGRLKFISFSFNKLSGSIP-----TWIGVLSKLQIMSLRNN---NITGPI 130
Y LP +L ++G + + L G P ++G++S ++ +N NIT
Sbjct: 60 YQQLPKKL-RIGEVDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESDNLGMNITRQH 118
Query: 131 PNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEI-GNLQNLE 189
+ L L + I N+ + + NLS+L +LR N +++P+ + +L+NLE
Sbjct: 119 LDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHL---ELRAN--IEEMPSHLFDDLENLE 173
Query: 190 SLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLI 248
S+ G+N L + P IF + ++ LNL SNQ +P I L +++ + L N
Sbjct: 174 SIEFGSNKLRQM-PRGIFGKMPKLKQLNLASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 231
Query: 249 GTIP 252
+ P
Sbjct: 232 CSCP 235
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 107/408 (26%), Positives = 175/408 (42%), Gaps = 74/408 (18%)
Query: 169 LRHNNLQDQIP-TEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLP 227
L N+ D + T++ + L++ LG ++ G + ++ + +N +NQ + P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 228 STIGHSLPNIEYLT--LAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHL 285
L N+ L L NN I I L N + L GL L +N + P NL +L
Sbjct: 81 ------LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDP--LKNLTNL 131
Query: 286 NVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSF 345
N L + +N ++ S LS LT+ ++LS+ SN + + P + N + +L+
Sbjct: 132 NRLELSSNTIS-------DISALSGLTSLQQLSF---SSNQVTDLKP--LANLT-TLERL 178
Query: 346 YAYECKLGG-SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLE--G 402
K+ S+ ++ NL LI +D+ T +G L L LSL N L+ G
Sbjct: 179 DISSNKVSDISVLAKLTNLESLIATNNQISDI-----TPLGILTNLDELSLNGNQLKDIG 233
Query: 403 SIP--YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIX 460
++ +L L+L N++S P L+ LT L EL+LG+N++++ P
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP------------- 278
Query: 461 XXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPE 520
+ L L L+L+ NQL P I L +L L+L N P
Sbjct: 279 -------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP- 322
Query: 521 SVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568
V SL L+ L S N S SL L+++ + N + P+
Sbjct: 323 -VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 367
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 111/230 (48%), Gaps = 26/230 (11%)
Query: 62 LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121
L L+ L SL T N P LG L L +S + N+L I T + L+ L + L
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGT-LASLTNLTDLDL 246
Query: 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTE 181
NN I+ P L L+KL L+ N I NI S + L+ L +L+L N L+D P
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQI-SNI-SPLAGLTALTNLELNENQLEDISP-- 300
Query: 182 IGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241
I NL+NL L L NN+S + P + +++ ++ L +N+ S S++ + L NI +L+
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLAN-LTNINWLS 355
Query: 242 LAINNLIGTIPDSLTNASKLIGLDLGSNSFSG---------HIPNTFGNL 282
N + P L N +++ L L +++ IPNT N+
Sbjct: 356 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 403
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 115/256 (44%), Gaps = 31/256 (12%)
Query: 11 FQ-SHLAIMLLYLLKTTNMRLSWVGIS-CDS--RHQRVKALNLSGMGLGGTIPPHLGNL- 65
FQ H ++ L + +M W+G C + ++ + L+LSG G ++ +
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236
Query: 66 ------SFLMSLDVTLNNFYGHL----PNELGKLG----RLKFISFSFNKLSGSIPTWIG 111
S ++S + + +GH P+ G +K S +K+ + +
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296
Query: 112 VLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSNLFDLDLR 170
+ L+ ++L N I N+ + L+ L L S N + G+I S + NL L LDL
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLS 355
Query: 171 HNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQFSGRLPST 229
+N+++ L NL+ LAL TN L +P IF+ +++++ + LH+N +
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC----- 409
Query: 230 IGHSLPNIEYLTLAIN 245
S P I+YL+ +N
Sbjct: 410 ---SCPRIDYLSRWLN 422
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 103/444 (23%), Positives = 173/444 (38%), Gaps = 76/444 (17%)
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQFSGR 225
+DL N++ + T LQ+L+ L + +I F +S++ +L L NQF +
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-Q 93
Query: 226 LPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHL 285
L + + L N+E LTL NL G + SG N F L L
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAV-------------------LSG---NFFKPLTSL 131
Query: 286 NVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF------- 338
+L +R NN+ + S N R+ L L N + I + NF
Sbjct: 132 EMLVLRDNNIKKIQPA-------SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184
Query: 339 ----SASLQSFYAYECKLGGSIPKEIGN-LRGLILLTLD--------------FNDLNGT 379
S +LQ Y LG ++ GN + + TLD F+ + GT
Sbjct: 185 LRLSSITLQDMNEYW--LGW---EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239
Query: 380 -IPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNG--------NKLSGHIPPCLASLT 430
I + + + G S N + + LE +G +K+ + + T
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299
Query: 431 SLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQL 490
L +L L N++ ++ W L ++L++ + L L VLDLS N +
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
Query: 491 SGNIPSTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNFSGKIPKSLEAL 549
+ L +L+ L+L +NQ + +P+ + L SL+ + L N + P+ ++ L
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYL 417
Query: 550 SHLKQFNVSQNMLEGEIPVKGSFK 573
S + N + +G GS K
Sbjct: 418 S--RWLNKNSQKEQGSAKCSGSGK 439
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 47/289 (16%)
Query: 169 LRHNNLQDQIP-TEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLP 227
L N+ D + T++ + L++ LG ++ G + ++ + +N +NQ + P
Sbjct: 30 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 84
Query: 228 STIGHSLPNIEYLT--LAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHL 285
L N+ L L NN I I L N + L GL L +N + P NL +L
Sbjct: 85 ------LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDP--LKNLTNL 135
Query: 286 NVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSY--LVLDSNPLGGILPPLIGNFSASLQ 343
N L + +N ++ S LS LT+ ++LS+ V D PL + +L+
Sbjct: 136 NRLELSSNTIS-------DISALSGLTSLQQLSFGNQVTDLKPLANL---------TTLE 179
Query: 344 SFYAYECKLGG-SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLE- 401
K+ S+ ++ NL LI +D+ T +G L L LSL N L+
Sbjct: 180 RLDISSNKVSDISVLAKLTNLESLIATNNQISDI-----TPLGILTNLDELSLNGNQLKD 234
Query: 402 -GSIP--YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIP 447
G++ +L L+L N++S P L+ LT L EL+LG+N++++ P
Sbjct: 235 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 281
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 111/230 (48%), Gaps = 26/230 (11%)
Query: 62 LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121
L L+ L SL T N P LG L L +S + N+L I T + L+ L + L
Sbjct: 194 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGT-LASLTNLTDLDL 249
Query: 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTE 181
NN I+ P L L+KL L+ N I NI S + L+ L +L+L N L+D P
Sbjct: 250 ANNQISNLAP--LSGLTKLTELKLGANQI-SNI-SPLAGLTALTNLELNENQLEDISP-- 303
Query: 182 IGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241
I NL+NL L L NN+S + P + +++ ++ L +N+ S S++ + L NI +L+
Sbjct: 304 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLAN-LTNINWLS 358
Query: 242 LAINNLIGTIPDSLTNASKLIGLDLGSNSFSG---------HIPNTFGNL 282
N + P L N +++ L L +++ IPNT N+
Sbjct: 359 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 406
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 47/289 (16%)
Query: 169 LRHNNLQDQIP-TEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLP 227
L N+ D + T++ + L++ LG ++ G + ++ + +N +NQ + P
Sbjct: 31 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 85
Query: 228 STIGHSLPNIEYLT--LAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHL 285
L N+ L L NN I I L N + L GL L +N + P NL +L
Sbjct: 86 ------LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDP--LKNLTNL 136
Query: 286 NVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSY--LVLDSNPLGGILPPLIGNFSASLQ 343
N L + +N ++ S LS LT+ ++LS+ V D PL + +L+
Sbjct: 137 NRLELSSNTIS-------DISALSGLTSLQQLSFGNQVTDLKPLANL---------TTLE 180
Query: 344 SFYAYECKLGG-SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLE- 401
K+ S+ ++ NL LI +D+ T +G L L LSL N L+
Sbjct: 181 RLDISSNKVSDISVLAKLTNLESLIATNNQISDI-----TPLGILTNLDELSLNGNQLKD 235
Query: 402 -GSIP--YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIP 447
G++ +L L+L N++S P L+ LT L EL+LG+N++++ P
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 26/230 (11%)
Query: 62 LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121
L L+ L SL T N P LG L L +S + N+L I T + L+ L + L
Sbjct: 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGT-LASLTNLTDLDL 250
Query: 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTE 181
NN I+ P L L+KL L+ N I NI S + L+ L +L+L N L+D P
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQI-SNI-SPLAGLTALTNLELNENQLEDISP-- 304
Query: 182 IGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241
I NL+NL L L NN+S + P + +++ ++ L ++N+ S S++ + L NI +L+
Sbjct: 305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN-LTNINWLS 359
Query: 242 LAINNLIGTIPDSLTNASKLIGLDLGSNSFSG---------HIPNTFGNL 282
N + P L N +++ L L +++ IPNT N+
Sbjct: 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 42/287 (14%)
Query: 169 LRHNNLQDQIP-TEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLP 227
L N+ D + T++ + L++ LG ++ G + ++ + +N +NQ + P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 228 STIGHSLPNIEYLT--LAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHL 285
L N+ L L NN I I L N + L GL L +N + P NL +L
Sbjct: 81 ------LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDP--LKNLTNL 131
Query: 286 NVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSF 345
N L + +N ++ S LS LT+ ++LS+ SN + + P + N + +L+
Sbjct: 132 NRLELSSNTIS-------DISALSGLTSLQQLSF---SSNQVTDLKP--LANLT-TLERL 178
Query: 346 YAYECKLGG-SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLE--G 402
K+ S+ ++ NL LI +D+ T +G L L LSL N L+ G
Sbjct: 179 DISSNKVSDISVLAKLTNLESLIATNNQISDI-----TPLGILTNLDELSLNGNQLKDIG 233
Query: 403 SIP--YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIP 447
++ +L L+L N++S P L+ LT L EL+LG+N++++ P
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 26/230 (11%)
Query: 62 LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121
L L+ L SL T N P LG L L +S + N+L I T + L+ L + L
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGT-LASLTNLTDLDL 246
Query: 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTE 181
NN I+ P L L+KL L+ N I NI S + L+ L +L+L N L+D P
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQI-SNI-SPLAGLTALTNLELNENQLEDISP-- 300
Query: 182 IGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241
I NL+NL L L NN+S + P + +++ ++ L ++N+ S S++ + L NI +L+
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN-LTNINWLS 355
Query: 242 LAINNLIGTIPDSLTNASKLIGLDLGSNSFSG---------HIPNTFGNL 282
N + P L N +++ L L +++ IPNT N+
Sbjct: 356 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 403
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 106/410 (25%), Positives = 172/410 (41%), Gaps = 79/410 (19%)
Query: 169 LRHNNLQDQIP-TEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLP 227
L N+ D + T++ + L++ LG ++ G + ++ + +N +NQ + P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 228 STIGHSLPNIEYLT--LAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHL 285
L N+ L L NN I I L N + L GL L +N + P NL +L
Sbjct: 81 ------LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDP--LKNLTNL 131
Query: 286 NVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSY--LVLDSNPLGGILPPLIGNFSASLQ 343
N L + +N ++ S LS LT+ ++L++ V D PL + +L+
Sbjct: 132 NRLELSSNTIS-------DISALSGLTSLQQLNFGNQVTDLKPLANL---------TTLE 175
Query: 344 SFYAYECKLGG-SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLE- 401
K+ S+ ++ NL LI +D+ T +G L L LSL N L+
Sbjct: 176 RLDISSNKVSDISVLAKLTNLESLIATNNQISDI-----TPLGILTNLDELSLNGNQLKD 230
Query: 402 -GSIP--YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILE 458
G++ +L L+L N++S P L+ LT L EL+LG+N++++ P
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----------- 277
Query: 459 IXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI 518
+ L L L+L+ NQL P I L +L L+L N
Sbjct: 278 ---------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 320
Query: 519 PESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568
P V SL L+ L S N S SL L+++ + N + P+
Sbjct: 321 P--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 366
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 111/230 (48%), Gaps = 26/230 (11%)
Query: 62 LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121
L L+ L SL T N P LG L L +S + N+L I T + L+ L + L
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGT-LASLTNLTDLDL 245
Query: 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTE 181
NN I+ P L L+KL L+ N I NI S + L+ L +L+L N L+D P
Sbjct: 246 ANNQISNLAP--LSGLTKLTELKLGANQI-SNI-SPLAGLTALTNLELNENQLEDISP-- 299
Query: 182 IGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241
I NL+NL L L NN+S + P + +++ ++ L +N+ S S++ + L NI +L+
Sbjct: 300 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLAN-LTNINWLS 354
Query: 242 LAINNLIGTIPDSLTNASKLIGLDLGSNSFSG---------HIPNTFGNL 282
N + P L N +++ L L +++ IPNT N+
Sbjct: 355 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 402
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 12/117 (10%)
Query: 132 NSLFN-LSKLEMLQASFNVIDGN-IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLE 189
N +FN LS LE+L+ + N N +P L NL LDL L+ PT +L +L+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 190 SLALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAIN 245
L + +N L +P IF+ +++++ + LH+N + S P I+YL+ +N
Sbjct: 498 VLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC--------SCPRIDYLSRWLN 545
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 34/227 (14%)
Query: 75 LNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNIT--GPIPN 132
+N +G P KL LK ++F+ NK G+ + + L L+ + L N ++ G
Sbjct: 312 VNCKFGQFPT--LKLKSLKRLTFTSNK-GGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQ 367
Query: 133 SLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIG-NLQNLESL 191
S F + L+ L SFN + + S L L LD +H+NL+ + +L+NL L
Sbjct: 368 SDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 192 ALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGT 250
+ + + + IFN +S++ VL + N F
Sbjct: 427 DISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENF------------------------ 461
Query: 251 IPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTT 297
+PD T L LDL P F +L L VL++ +N L +
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLS 534
+L+ L LDLS+ QL P+ +L L+ L++ASNQ + +P+ + L SL+ + L
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLH 526
Query: 535 GNNFSGKIPK 544
N + P+
Sbjct: 527 TNPWDCSCPR 536
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 493 NIPSTIGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNFSGKIPKSLEALSH 551
N P IG L L+ L++A N Q +PE +L +LE LDLS N L L
Sbjct: 117 NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Query: 552 L 552
+
Sbjct: 175 M 175
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 9/151 (5%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN-LSKLEMLQASFNVIDGNIPSGIGN-LS 162
S+PT G+ ++ + L N++ +PN +F+ L+ L L N + ++P+G+ N L+
Sbjct: 21 SVPT--GIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLT 76
Query: 163 NLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQ 221
+L L+L N LQ L L+ LAL TN L L P +F+ ++ ++ L L+ NQ
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL-PDGVFDKLTQLKDLRLYQNQ 135
Query: 222 FSGRLPSTIGHSLPNIEYLTLAINNLIGTIP 252
+P + L +++Y+ L N T P
Sbjct: 136 LKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 26/165 (15%)
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXX 463
IP +L+L N L LTSL +L LG NKL S+P+ +++
Sbjct: 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFN----------- 73
Query: 464 XXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV- 522
KL L L+LS NQL L L+ L+L +NQ Q +P+ V
Sbjct: 74 ------------KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVF 120
Query: 523 GSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIP 567
L L+ L L N + L+ L+ + N + P
Sbjct: 121 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 132/289 (45%), Gaps = 47/289 (16%)
Query: 169 LRHNNLQDQIP-TEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLP 227
L N+ D + T++ + L++ LG ++ G + ++ + +N +NQ + P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 228 STIGHSLPNIEYLT--LAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHL 285
L N+ L L NN I I L N + L GL L +N + P NL +L
Sbjct: 81 ------LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDP--LKNLTNL 131
Query: 286 NVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSY--LVLDSNPLGGILPPLIGNFSASLQ 343
N L + +N ++ S LS LT+ ++L++ V D PL + +L+
Sbjct: 132 NRLELSSNTIS-------DISALSGLTSLQQLNFGNQVTDLKPLANL---------TTLE 175
Query: 344 SFYAYECKLGG-SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLE- 401
K+ S+ ++ NL LI +D+ T +G L L LSL N L+
Sbjct: 176 RLDISSNKVSDISVLAKLTNLESLIATNNQISDI-----TPLGILTNLDELSLNGNQLKD 230
Query: 402 -GSIP--YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIP 447
G++ +L L+L N++S P L+ LT L EL+LG+N++++ P
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 277
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 26/230 (11%)
Query: 62 LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121
L L+ L SL T N P LG L L +S + N+L I T + L+ L + L
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGT-LASLTNLTDLDL 245
Query: 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTE 181
NN I+ P L L+KL L+ N I NI S + L+ L +L+L N L+D P
Sbjct: 246 ANNQISNLAP--LSGLTKLTELKLGANQI-SNI-SPLAGLTALTNLELNENQLEDISP-- 299
Query: 182 IGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241
I NL+NL L L NN+S + P + +++ ++ L ++N+ S S++ + L NI +L+
Sbjct: 300 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN-LTNINWLS 354
Query: 242 LAINNLIGTIPDSLTNASKLIGLDLGSNSFSG---------HIPNTFGNL 282
N + P L N +++ L L +++ IPNT N+
Sbjct: 355 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 402
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 42/287 (14%)
Query: 169 LRHNNLQDQIP-TEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLP 227
L N+ D + T++ + L++ LG ++ G + ++ + +N +NQ + P
Sbjct: 26 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP 80
Query: 228 STIGHSLPNIEYLT--LAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHL 285
L N+ L L NN I I L N + L GL L +N + P NL +L
Sbjct: 81 ------LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDP--LKNLTNL 131
Query: 286 NVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSF 345
N L + +N ++ S LS LT+ ++L++ SN + + P + N + +L+
Sbjct: 132 NRLELSSNTIS-------DISALSGLTSLQQLNF---SSNQVTDLKP--LANLT-TLERL 178
Query: 346 YAYECKLGG-SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLE--G 402
K+ S+ ++ NL LI +D+ T +G L L LSL N L+ G
Sbjct: 179 DISSNKVSDISVLAKLTNLESLIATNNQISDI-----TPLGILTNLDELSLNGNQLKDIG 233
Query: 403 SIP--YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIP 447
++ +L L+L N++S P L+ LT L EL+LG+N++++ P
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 26/230 (11%)
Query: 62 LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121
L L+ L SL T N P LG L L +S + N+L I T + L+ L + L
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGT-LASLTNLTDLDL 246
Query: 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTE 181
NN I+ P L L+KL L+ N I NI S + L+ L +L+L N L+D P
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQI-SNI-SPLAGLTALTNLELNENQLEDISP-- 300
Query: 182 IGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241
I NL+NL L L NN+S + P + +++ ++ L ++N+ S S++ + L NI +L+
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN-LTNINWLS 355
Query: 242 LAINNLIGTIPDSLTNASKLIGLDLGSNSFSG---------HIPNTFGNL 282
N + P L N +++ L L +++ IPNT N+
Sbjct: 356 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 403
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 16/145 (11%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN-LSKLEMLQASFNVIDGNIPSGI-GNLS 162
S+PT G+ S + L +N + +P+ +F+ L++L L S N I ++P G+ L+
Sbjct: 21 SVPT--GIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLT 76
Query: 163 NLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQ 221
L L L N LQ L L+ LAL TN L +P IF+ +++++ + LH+N
Sbjct: 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNP 135
Query: 222 FSGRLPSTIGHSLPNIEYLTLAINN 246
+ S P I+YL+ +N
Sbjct: 136 WDC--------SCPRIDYLSRWLNK 152
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 129/310 (41%), Gaps = 46/310 (14%)
Query: 234 LPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTN 293
L N+EYL L N + P L+N KL L +G+N + + NL +L L + +
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120
Query: 294 NLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLG 353
N+ S +S L N K L L +N L PL L E K+
Sbjct: 121 NI----------SDISPLANLTKXYSLNLGANHNLSDLSPLSN--XTGLNYLTVTESKVK 168
Query: 354 GSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLEL 413
P I NL L L+L++N + P + T S+ Y ++
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISPLASLT----------------SLHYFTAYV-- 208
Query: 414 NGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXXXXXX 473
N+++ P +A+ T L L++G+NK+T P + S LEI
Sbjct: 209 --NQITDITP--VANXTRLNSLKIGNNKITDLSPLANLSQLTWLEI----GTNQISDINA 260
Query: 474 VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDL 533
V+ L L+ L++ NQ+S S + L L +L L +NQ E +G L +L +L L
Sbjct: 261 VKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFL 318
Query: 534 SGNNFSGKIP 543
S N+ + P
Sbjct: 319 SQNHITDIRP 328
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 36/187 (19%)
Query: 94 FISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLF--NLSKLEMLQASFNVID 151
F++F+ N + S+ L +LQ + L+ N + +L N+S LE L S N ++
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 152 GNIPSG---------IGNLSN------LFD--------LDLRHNNLQDQIPTEIGNLQNL 188
+ + NLS+ +F LDL HNN IP ++ +LQ L
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDL-HNNRIMSIPKDVTHLQAL 475
Query: 189 ESLALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL 247
+ L + +N L +P +F+ +++++ + LH N + + P I YL+ IN
Sbjct: 476 QELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKH 526
Query: 248 IGTIPDS 254
G + +S
Sbjct: 527 SGVVRNS 533
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 42 QRVKALNLSGMGLGGTIPPHL--GNLSFLMSLDVTLNNFYGHLPNELGKLGR-LKFISFS 98
+R++ L L GL L N+S L +LDV+LN+ H + + ++ S
Sbjct: 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436
Query: 99 FNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI 158
N L+GS+ + + K++++ L NN I IP + +L L+ L + N + +P G+
Sbjct: 437 SNMLTGSV--FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGV 492
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 480 LRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNF 538
++VLDL N++ IP + L L+ L++ASNQ + +P+ V L SL+ + L N +
Sbjct: 452 VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPW 509
Query: 539 SGKIP 543
P
Sbjct: 510 DCTCP 514
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 480 LRVLDLSRNQLSGNIPSTIGALVD-LETLSLASNQFQGPIPESVGSLISLESLDLSGNNF 538
L LD+S N L+ + A + + L+L+SN G + + + + LDL N
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV--LDLHNNRI 462
Query: 539 SGKIPKSLEALSHLKQFNVSQNMLEG 564
IPK + L L++ NV+ N L+
Sbjct: 463 MS-IPKDVTHLQALQELNVASNQLKS 487
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 89 LGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN-LSKLEMLQASF 147
L +L +++ +N+L L++L + L NN + +P +F+ L++L+ L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 148 NVIDGNIPSGI-GNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAI 206
N + ++PSG+ L+ L +L L N LQ L NL++L+L TN L + A
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 207 FNISTIRVLNLHSNQFSGRLPSTI 230
+ ++ + L NQF T+
Sbjct: 176 DRLGKLQTITLFGNQFDCSRCETL 199
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 71/182 (39%), Gaps = 45/182 (24%)
Query: 361 GNLRGLILLT---LDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNK 417
RGL LT LD+N L L +L L L +N L S+P +
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGV--------- 102
Query: 418 LSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXXXXXXVQKL 477
LT L +L LG N+L S+PS ++ +L
Sbjct: 103 --------FDHLTQLDKLYLGGNQL-KSLPSGVFD-----------------------RL 130
Query: 478 KVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNN 537
L+ L L+ NQL L +L+TLSL++NQ Q + L L+++ L GN
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Query: 538 FS 539
F
Sbjct: 191 FD 192
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 60/147 (40%), Gaps = 16/147 (10%)
Query: 176 DQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLP 235
D +P+ I + E L L + L+ L ++ + LNL NQ L + + L
Sbjct: 27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLT 83
Query: 236 NIEYLTLAINNLIGTIP----DSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIR 291
+ L LA NN + ++P D LT KL LG N F L L L +
Sbjct: 84 ELGTLGLA-NNQLASLPLGVFDHLTQLDKLY---LGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 292 TNNLTTESSSADQWSFLSSLTNCRKLS 318
TN L + + A LTN + LS
Sbjct: 140 TNQLQSIPAGA-----FDKLTNLQTLS 161
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 89 LGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN-LSKLEMLQASF 147
L +L +++ +N+L L++L + L NN + +P +F+ L++L+ L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 148 NVIDGNIPSGI-GNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAI 206
N + ++PSG+ L+ L +L L N LQ L NL++L+L TN L + A
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 207 FNISTIRVLNLHSNQFS 223
+ ++ + L NQF
Sbjct: 176 DRLGKLQTITLFGNQFD 192
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 71/182 (39%), Gaps = 45/182 (24%)
Query: 361 GNLRGLILLT---LDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNK 417
RGL LT LD+N L L +L L L +N L S+P +
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGV--------- 102
Query: 418 LSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXXXXXXVQKL 477
LT L +L LG N+L S+PS ++ +L
Sbjct: 103 --------FDHLTQLDKLYLGGNQL-KSLPSGVFD-----------------------RL 130
Query: 478 KVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNN 537
L+ L L+ NQL L +L+TLSL++NQ Q + L L+++ L GN
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Query: 538 FS 539
F
Sbjct: 191 FD 192
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 60/147 (40%), Gaps = 16/147 (10%)
Query: 176 DQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLP 235
D +P+ I + E L L + L+ L ++ + LNL NQ L + + L
Sbjct: 27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLT 83
Query: 236 NIEYLTLAINNLIGTIP----DSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIR 291
+ L LA NN + ++P D LT KL LG N F L L L +
Sbjct: 84 ELGTLGLA-NNQLASLPLGVFDHLTQLDKLY---LGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 292 TNNLTTESSSADQWSFLSSLTNCRKLS 318
TN L + + A LTN + LS
Sbjct: 140 TNQLQSIPAGA-----FDKLTNLQTLS 161
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 81 HLPNELGKLGRLKFISFSFNKLSGSIPTWI-GVLSKLQIMSLRNNNITGPIPNSLFN-LS 138
H + L +L L ++ + N+L S+P + L+ L+ + L N + +P+ +F+ L+
Sbjct: 76 HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLT 133
Query: 139 KLEMLQASFNVIDGNIPSGI-GNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNN 197
L L + N + +P G+ L+NL +LDL +N LQ L L+ L L N
Sbjct: 134 NLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192
Query: 198 LSGLIPPAIFN-ISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDS 254
L +P +F+ +++++ + LH N + + P I YL+ IN G + +S
Sbjct: 193 LKS-VPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNS 241
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 74/182 (40%), Gaps = 21/182 (11%)
Query: 156 SGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-ISTIRV 214
GI L N+ L L N L D + + L NL L L N L L P +F+ ++ ++
Sbjct: 57 QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKE 113
Query: 215 LNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP----DSLTNASKLIGLDLGSNS 270
L L NQ LP + L N+ YL LA N L ++P D LTN L LDL N
Sbjct: 114 LVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTN---LTELDLSYNQ 168
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
F L L L + N L + LT+ L Y+ L NP
Sbjct: 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV-----FDRLTS---LQYIWLHDNPWDCT 220
Query: 331 LP 332
P
Sbjct: 221 CP 222
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 65/155 (41%), Gaps = 28/155 (18%)
Query: 410 HLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXX 469
+L L GNKL H L LT+L L L N+L S+P+ ++
Sbjct: 67 YLALGGNKL--HDISALKELTNLTYLILTGNQL-QSLPNGVFD----------------- 106
Query: 470 XXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV-GSLISL 528
KL L+ L L NQL L +L L+LA NQ Q +P+ V L +L
Sbjct: 107 ------KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNL 159
Query: 529 ESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
LDLS N + L+ LK + QN L+
Sbjct: 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Query: 407 DLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWS-LEYILEIXXXXXX 465
+L +L L GN+L LT+L+EL L N+L S+P ++ L + +
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 466 XXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV-GS 524
KL L LDLS NQL L L+ L L NQ + +P+ V
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDR 203
Query: 525 LISLESLDLSGNNFSGKIP 543
L SL+ + L N + P
Sbjct: 204 LTSLQYIWLHDNPWDCTCP 222
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 15/189 (7%)
Query: 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLF----NLSKLEMLQASF 147
LK++ SFN + ++G L +L+ + +++N+ S+F NL L++
Sbjct: 375 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 148 NVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ-IPTEIGNLQNLESLALGTNNLSGLIPPAI 206
V I +G LS+L L + N+ Q+ +P L+NL L L L L P A
Sbjct: 434 RVAFNGIFNG---LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 207 FNISTIRVLNL-HSNQFS-GRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTN-ASKLIG 263
++S+++VLN+ H+N FS P +SL ++Y ++N+++ + L + S L
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY---SLNHIMTSKKQELQHFPSSLAF 547
Query: 264 LDLGSNSFS 272
L+L N F+
Sbjct: 548 LNLTQNDFA 556
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 34/225 (15%)
Query: 75 LNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNIT--GPIPN 132
+N +G P KL LK ++F+ NK G+ + + L L+ + L N ++ G
Sbjct: 312 VNCKFGQFPT--LKLKSLKRLTFTSNK-GGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQ 367
Query: 133 SLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIG-NLQNLESL 191
S F + L+ L SFN + + S L L LD +H+NL+ + +L+NL L
Sbjct: 368 SDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 192 ALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGT 250
+ + + + IFN +S++ VL + N F
Sbjct: 427 DISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENF------------------------ 461
Query: 251 IPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNL 295
+PD T L LDL P F +L L VL++ NN
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 535
+L+ L LDLS+ QL P+ +L L+ L+++ N F L SL+ LD S
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527
Query: 536 NNFSGKIPKSLEAL-SHLKQFNVSQN 560
N+ + L+ S L N++QN
Sbjct: 528 NHIMTSKKQELQHFPSSLAFLNLTQN 553
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 493 NIPSTIGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNFSGKIPKSLEALSH 551
N P IG L L+ L++A N Q +PE +L +LE LDLS N L L
Sbjct: 117 NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Query: 552 L 552
+
Sbjct: 175 M 175
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 15/189 (7%)
Query: 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLF----NLSKLEMLQASF 147
LK++ SFN + ++G L +L+ + +++N+ S+F NL L++
Sbjct: 80 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 148 NVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ-IPTEIGNLQNLESLALGTNNLSGLIPPAI 206
V I +G LS+L L + N+ Q+ +P L+NL L L L L P A
Sbjct: 139 RVAFNGIFNG---LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195
Query: 207 FNISTIRVLNL-HSNQFS-GRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTN-ASKLIG 263
++S+++VLN+ H+N FS P +SL ++Y ++N+++ + L + S L
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY---SLNHIMTSKKQELQHFPSSLAF 252
Query: 264 LDLGSNSFS 272
L+L N F+
Sbjct: 253 LNLTQNDFA 261
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 84/202 (41%), Gaps = 34/202 (16%)
Query: 100 NKLSGSIPTWI-GVLSKLQIMSLRNNNIT--GPIPNSLFNLSKLEMLQASFN-VIDGNIP 155
NKL S+P + L++L +SL +N ++ G S F + L+ L SFN VI +
Sbjct: 38 NKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMS 94
Query: 156 SGIGNLSNLFDLDLRHNNLQDQIPTEIG-NLQNLESLALGTNNLSGLIPPAIFN-ISTIR 213
S L L LD +H+NL+ + +L+NL L + + + + IFN +S++
Sbjct: 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLE 153
Query: 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSG 273
VL + N F +PD T L LDL
Sbjct: 154 VLKMAGNSFQENF------------------------LPDIFTELRNLTFLDLSQCQLEQ 189
Query: 274 HIPNTFGNLRHLNVLSIRTNNL 295
P F +L L VL++ NN
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNF 211
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 535
+L+ L LDLS+ QL P+ +L L+ L+++ N F L SL+ LD S
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232
Query: 536 NNFSGKIPKSLEAL-SHLKQFNVSQN 560
N+ + L+ S L N++QN
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 64/184 (34%), Gaps = 27/184 (14%)
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS------------------- 444
IP LEL NKL LT L +L L SN L+
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85
Query: 445 ------SIPSSLWSLEYILEIXXXXXXXXXXXXXXV-QKLKVLRVLDLSRNQLSGNIPST 497
++ S+ LE + + V L+ L LD+S
Sbjct: 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 498 IGALVDLETLSLASNQFQ-GPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFN 556
L LE L +A N FQ +P+ L +L LDLS P + +LS L+ N
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 557 VSQN 560
+S N
Sbjct: 206 MSHN 209
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 15/189 (7%)
Query: 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLF----NLSKLEMLQASF 147
LK++ SFN + ++G L +L+ + +++N+ S+F NL L++
Sbjct: 399 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457
Query: 148 NVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ-IPTEIGNLQNLESLALGTNNLSGLIPPAI 206
V I +G LS+L L + N+ Q+ +P L+NL L L L L P A
Sbjct: 458 RVAFNGIFNG---LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514
Query: 207 FNISTIRVLNL-HSNQFS-GRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTN-ASKLIG 263
++S+++VLN+ H+N FS P +SL ++Y ++N+++ + L + S L
Sbjct: 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY---SLNHIMTSKKQELQHFPSSLAF 571
Query: 264 LDLGSNSFS 272
L+L N F+
Sbjct: 572 LNLTQNDFA 580
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 91/225 (40%), Gaps = 34/225 (15%)
Query: 75 LNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNIT--GPIPN 132
+N +G P KL LK ++F+ NK G+ + + L L+ + L N ++ G
Sbjct: 336 VNCKFGQFPT--LKLKSLKRLTFTSNK-GGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQ 391
Query: 133 SLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIG-NLQNLESL 191
S F L+ L SFN + + S L L LD +H+NL+ + +L+NL L
Sbjct: 392 SDFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450
Query: 192 ALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGT 250
+ + + + IFN +S++ VL + N F
Sbjct: 451 DISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENF------------------------ 485
Query: 251 IPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNL 295
+PD T L LDL P F +L L VL++ NN
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 535
+L+ L LDLS+ QL P+ +L L+ L+++ N F L SL+ LD S
Sbjct: 492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551
Query: 536 NNFSGKIPKSLEAL-SHLKQFNVSQN 560
N+ + L+ S L N++QN
Sbjct: 552 NHIMTSKKQELQHFPSSLAFLNLTQN 577
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 493 NIPSTIGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNFSGKIPKSLEALSH 551
N P IG L L+ L++A N Q +PE +L +LE LDLS N L L
Sbjct: 141 NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198
Query: 552 L 552
+
Sbjct: 199 M 199
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRL 226
LDL++N + + + NL+NL +L L N +S + P A + + L L NQ L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 227 PSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSF--SGHIPNTFGNLRH 284
P + +L + L + N + +++I ++LG+N SG F ++
Sbjct: 116 PEKMPKTL---QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 285 LNVLSIRTNNLTT 297
L+ + I N+TT
Sbjct: 173 LSYIRIADTNITT 185
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 19/214 (8%)
Query: 251 IPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSS 310
+P L + L LDL +N + F NL++L+ L + N ++ S A +
Sbjct: 46 VPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-----FAP 98
Query: 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLT 370
L KL L L N L L +LQ +E ++ L +I++
Sbjct: 99 LV---KLERLYLSKNQLKE----LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151
Query: 371 LDFNDLN--GTIPTSVGTLQQLQGLSLEDNNL---EGSIPYDLCHLELNGNKLSGHIPPC 425
L N L G + +++L + + D N+ +P L L L+GNK++
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS 211
Query: 426 LASLTSLRELRLGSNKLTSSIPSSLWSLEYILEI 459
L L +L +L L N +++ SL + ++ E+
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 99/240 (41%), Gaps = 34/240 (14%)
Query: 113 LSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHN 172
L L + L NN I+ P + L KLE L S N + +P + L +L + N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHEN 131
Query: 173 NLQDQIPTEIGNLQNLESLALGTNNL--SGL-------------IPPAIFNISTI----- 212
+ + L + + LGTN L SG+ I A NI+TI
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 191
Query: 213 ---RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSN 269
L+L N+ + ++ + L N+ L L+ N++ SL N L L L +N
Sbjct: 192 PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 270 SFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSY--LVLDSNPL 327
+P + +++ V+ + NN++ S+ F N +K SY + L SNP+
Sbjct: 251 KLV-KVPGGLADHKYIQVVYLHNNNISAIGSN----DFCPPGYNTKKASYSGVSLFSNPV 305
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRL 226
LDL++N + + + NL+NL +L L N +S + P A + + L L NQ L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 227 PSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSF--SGHIPNTFGNLRH 284
P + +L + L + N + +++I ++LG+N SG F ++
Sbjct: 116 PEKMPKTL---QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 285 LNVLSIRTNNLTT 297
L+ + I N+TT
Sbjct: 173 LSYIRIADTNITT 185
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 19/214 (8%)
Query: 251 IPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSS 310
+P L + L LDL +N + F NL++L+ L + N ++ S A +
Sbjct: 46 VPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-----FAP 98
Query: 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLT 370
L KL L L N L L +LQ +E ++ L +I++
Sbjct: 99 LV---KLERLYLSKNQLKE----LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151
Query: 371 LDFNDLN--GTIPTSVGTLQQLQGLSLEDNNL---EGSIPYDLCHLELNGNKLSGHIPPC 425
L N L G + +++L + + D N+ +P L L L+GNK++
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS 211
Query: 426 LASLTSLRELRLGSNKLTSSIPSSLWSLEYILEI 459
L L +L +L L N +++ SL + ++ E+
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 99/240 (41%), Gaps = 34/240 (14%)
Query: 113 LSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHN 172
L L + L NN I+ P + L KLE L S N + +P + L +L + N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHEN 131
Query: 173 NLQDQIPTEIGNLQNLESLALGTNNL--SGL-------------IPPAIFNISTI----- 212
+ + L + + LGTN L SG+ I A NI+TI
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 191
Query: 213 ---RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSN 269
L+L N+ + ++ + L N+ L L+ N++ SL N L L L +N
Sbjct: 192 PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 270 SFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSY--LVLDSNPL 327
+P + +++ V+ + NN++ S+ F N +K SY + L SNP+
Sbjct: 251 KLV-KVPGGLADHKYIQVVYLHNNNISAIGSN----DFCPPGYNTKKASYSGVSLFSNPV 305
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 152 GNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-IS 210
++P+GI +N L L N + P +L NL+ L LG+N L G +P +F+ ++
Sbjct: 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270
+ VL+L +NQ + LPS + L +++ L + N L +P + + L L L N
Sbjct: 89 QLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146
Query: 271 FSGHIPN 277
IP+
Sbjct: 147 LKS-IPH 152
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 18/122 (14%)
Query: 213 RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP----DSLTNASKLIGLDLGS 268
++L LH NQ + +L + SL N++ L L N L G +P DSLT +L LDLG+
Sbjct: 43 QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT---QLTVLDLGT 97
Query: 269 NSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLG 328
N + F L HL L + N LT ++ LT+ L++L LD N L
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIER------LTH---LTHLALDQNQLK 148
Query: 329 GI 330
I
Sbjct: 149 SI 150
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 27/116 (23%)
Query: 481 RVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNFS 539
++L L NQ++ P +L++L+ L L SNQ G +P V SL L LDL N +
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 540 -----------------------GKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSF 572
++P+ +E L+HL + QN L+ IP G+F
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IP-HGAF 155
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNL 217
G L +L L+L+ N L P +++ L LG N + + + ++ LNL
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 218 HSNQFSGRLPSTIGHSLPNIEYLTLAIN 245
+ NQ S +P + H L ++ L LA N
Sbjct: 110 YDNQISCVMPGSFEH-LNSLTSLNLASN 136
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 535
+L L L+L RNQL+G P+ ++ L L N+ + + L L++L+L
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 536 NNFSGKIPKSLEALSHLKQFNVSQN 560
N S +P S E L+ L N++ N
Sbjct: 112 NQISCVMPGSFEHLNSLTSLNLASN 136
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 25/113 (22%)
Query: 402 GSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXX 461
G +P+ L LEL N+L+G P + ++EL+LG NK I EI
Sbjct: 51 GRLPH-LVKLELKRNQLTGIEPNAFEGASHIQELQLGENK--------------IKEISN 95
Query: 462 XXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQF 514
L L+ L+L NQ+S +P + L L +L+LASN F
Sbjct: 96 KMFLG----------LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 121 LRNNNITGPIP-NSLF-NLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQI 178
L N+N G I + LF L L L+ N + G P+ S++ +L L N +++
Sbjct: 35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94
Query: 179 PTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222
L L++L L N +S ++P + +++++ LNL SN F
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 234 LPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTN 293
LP++ L L N L G P++ AS + L LG N F L L L++ N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 294 NLTT 297
++
Sbjct: 113 QISC 116
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 8/182 (4%)
Query: 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK 101
+ VK+L+LS + L L +L +T N + LG L+ + S+N
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 85
Query: 102 LSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLF-NLSKLEMLQA----SFNVIDGNIPS 156
LS +W LS L ++L N SLF +L+KL++L+ +F I +
Sbjct: 86 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 145
Query: 157 GIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLN 216
G L+ L +L++ ++LQ P + ++QN+ L L L+ + S++ L
Sbjct: 146 G---LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 202
Query: 217 LH 218
L
Sbjct: 203 LR 204
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 478 KVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN- 536
+ ++ LDLS N+++ S + V+L+ L L SN +S SL SLE LDLS N
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 85
Query: 537 --NFSGKIPKSLEALSHL 552
N S K L +L+ L
Sbjct: 86 LSNLSSSWFKPLSSLTFL 103
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 8/182 (4%)
Query: 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK 101
+ VK+L+LS + L L +L +T N + LG L+ + S+N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 102 LSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLF-NLSKLEMLQA----SFNVIDGNIPS 156
LS +W LS L ++L N SLF +L+KL++L+ +F I +
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 157 GIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLN 216
G L+ L +L++ ++LQ P + ++QN+ L L L+ + S++ L
Sbjct: 172 G---LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228
Query: 217 LH 218
L
Sbjct: 229 LR 230
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 478 KVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN- 536
+ ++ LDLS N+++ S + V+L+ L L SN +S SL SLE LDLS N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 537 --NFSGKIPKSLEALSHL 552
N S K L +L+ L
Sbjct: 112 LSNLSSSWFKPLSSLTFL 129
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 157 GIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-ISTIRVL 215
GI L N+ L L N L D + + L NL L L N L L P +F+ ++ ++ L
Sbjct: 58 GIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKEL 114
Query: 216 NLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP----DSLTNASKLIGLDLGSNSF 271
L NQ LP + L N+ YL L N L ++P D LTN ++ LDL +N
Sbjct: 115 VLVENQLQS-LPDGVFDKLTNLTYLYLYHNQL-QSLPKGVFDKLTNLTR---LDLDNNQL 169
Query: 272 SGHIPNTFGNLRHLNVLSIRTNNLTT 297
F L L LS+ N L +
Sbjct: 170 QSLPEGVFDKLTQLKQLSLNDNQLKS 195
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 64/155 (41%), Gaps = 28/155 (18%)
Query: 410 HLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXX 469
+L L GNKL H L LT+L L L N+L S+P+ ++
Sbjct: 67 YLALGGNKL--HDISALKELTNLTYLILTGNQL-QSLPNGVFD----------------- 106
Query: 470 XXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV-GSLISL 528
KL L+ L L NQL L +L L L NQ Q +P+ V L +L
Sbjct: 107 ------KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNL 159
Query: 529 ESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
LDL N + L+ LKQ +++ N L+
Sbjct: 160 TRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 130 IPNSLF----NLSKLEMLQASFNVIDGNIPSGI-GNLSNLFDLDLRHNNLQDQIPTEIGN 184
+PN +F NL +L +++ ++P G+ L+NL L L HN LQ
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQ----SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDK 155
Query: 185 LQNLESLALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTL 242
L NL L L N L L P +F+ ++ ++ L+L+ NQ +P + L ++ ++ L
Sbjct: 156 LTNLTRLDLDNNQLQSL-PEGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWL 212
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 407 DLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWS-LEYILEIXXXXXX 465
+L +L L GN+L LT+L+EL L N+L S+P ++ L + +
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLYLYHNQ 144
Query: 466 XXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV 522
KL L LDL NQL L L+ LSL NQ + +P+ V
Sbjct: 145 LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDGV 200
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 81 HLPNELGKLGRLKFISFSFNKLSGSIPTWI-GVLSKLQIMSLRNNNITGPIPNSLFN-LS 138
H + L +L L ++ + N+L S+P + L+ L+ + L N + +P+ +F+ L+
Sbjct: 76 HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLT 133
Query: 139 KLEMLQASFNVIDGNIPSGI-GNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNN 197
L L N + +P G+ L+NL LDL +N LQ L L+ L+L N
Sbjct: 134 NLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQ 192
Query: 198 LSGLIPPAIFN 208
L +P +F+
Sbjct: 193 LKS-VPDGVFD 202
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 19/206 (9%)
Query: 47 LNLSGMGLGGTIPPHL---GNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS 103
+N+ + GT H+ +S + LD + N + G L L+ + N+L
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361
Query: 104 --GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSK-LEMLQASFNVIDGNIPSGIGN 160
I + LQ + + N+++ + +K L L S N++ I +
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP 421
Query: 161 LSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-ISTIRVLNLHS 219
+ DL H+N IP ++ L+ L+ L + +N L +P IF+ +++++ + LH+
Sbjct: 422 RIKVLDL---HSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHT 477
Query: 220 NQFSGRLPSTIGHSLPNIEYLTLAIN 245
N + S P I+YL+ +N
Sbjct: 478 NPWDC--------SCPRIDYLSRWLN 495
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 483 LDLSRNQLSGNIPSTIGALVDLETLSLASNQFQ--GPIPESVGSLISLESLDLSGNNFSG 540
LD S N L+ + G L +LETL L NQ + I E + SL+ LD+S N+ S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 541 KIPK-SLEALSHLKQFNVSQNMLEGEI 566
K L N+S N+L I
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTI 415
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 480 LRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNF 538
++VLDL N++ IP + L L+ L++ASNQ + +P+ + L SL+ + L N +
Sbjct: 423 IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPW 480
Query: 539 SGKIPK 544
P+
Sbjct: 481 DCSCPR 486
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 188 LESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINN 246
++ L +G N + L PP +F N+ + VL L N S LP I H+ P + L+++ NN
Sbjct: 101 IQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNN 158
Query: 247 LIGTIPDSLTNASKLIGLDLGSNSFS 272
L D+ + L L L SN +
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRLT 184
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 72/187 (38%), Gaps = 8/187 (4%)
Query: 309 SSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLIL 368
+S CR L+ L L SN L I + Q + +L P L L
Sbjct: 49 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 108
Query: 369 LTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGH 421
L LD L P L LQ L L+DN L+ ++P D L HL L+GN++S
Sbjct: 109 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV 167
Query: 422 IPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXXXXXXVQKLKVLR 481
L SL L L N++ P + L ++ + + L+ L+
Sbjct: 168 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 227
Query: 482 VLDLSRN 488
L L+ N
Sbjct: 228 YLRLNDN 234
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 129/335 (38%), Gaps = 31/335 (9%)
Query: 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTI-PDSLTNASK 260
PP + R + H +F + +P L N I T+ D +
Sbjct: 3 CPPRCECSAQDRAVLCHRKRFVA-----VPEGIPTETRLLDLGKNRIKTLNQDEFASFPH 57
Query: 261 LIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTN--------------NLTTESSSADQWS 306
L L+L N S P F NL +L L +R+N NLT S ++
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 307 FL--SSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKE-IGNL 363
L + L L + N L I + SL+ +C L SIP E + +L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKCNL-TSIPTEALSHL 175
Query: 364 RGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLED----NNLEGSIPYDLCHLELNGNKLS 419
GLI+L L ++N S L +L+ L + + + + Y L L+ +
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235
Query: 420 GHIPPCLA--SLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXXXXXXVQKL 477
P LA L LR L L N +++ S L L + EI + L
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295
Query: 478 KVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASN 512
LRVL++S NQL+ S ++ +LETL L SN
Sbjct: 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 44/203 (21%)
Query: 116 LQIMSLRNNNITGPIP---NSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHN 172
L+ + L N ++ P N+LFNL L + +I + +G LSNL LD+ N
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG---LSNLTKLDISEN 114
Query: 173 NLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGH 232
+ + +L NL+SL +G N+L + + FSG
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDL----------------VYISHRAFSG-------- 150
Query: 233 SLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRT 292
L ++E LTL NL ++L++ LI L L + + +F L L VL I
Sbjct: 151 -LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI-- 207
Query: 293 NNLTTESSSADQWSFLSSLT-NC 314
W +L ++T NC
Sbjct: 208 ----------SHWPYLDTMTPNC 220
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 72/187 (38%), Gaps = 8/187 (4%)
Query: 309 SSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLIL 368
+S CR L+ L L SN L I + Q + +L P L L
Sbjct: 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109
Query: 369 LTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGH 421
L LD L P L LQ L L+DN L+ ++P D L HL L+GN++S
Sbjct: 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV 168
Query: 422 IPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXXXXXXVQKLKVLR 481
L SL L L N++ P + L ++ + + L+ L+
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228
Query: 482 VLDLSRN 488
L L+ N
Sbjct: 229 YLRLNDN 235
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 172 NNLQ-DQIPT-EIGNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQFSGRLPS 228
N+LQ ++I T ++ L +G N + L PP +F N+ + VL L N S LP
Sbjct: 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSS-LPR 134
Query: 229 TIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNV 287
I H+ P + L+++ NNL D+ + L L L SN + + +L H NV
Sbjct: 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 193
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 147/567 (25%), Positives = 215/567 (37%), Gaps = 80/567 (14%)
Query: 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS 103
+ LNL+ L + S L SLDV N P KL LK ++ N+LS
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 104 GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSN 163
+ L + L +N+I I N+ F K N
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQK-----------------------N 122
Query: 164 LFDLDLRHNNLQD-QIPTEIGNLQNLESLALGTNNLSGLIPPA--IFNISTIRVLNLHSN 220
L LDL HN L ++ T++ L+NL+ L L N + L IF S+++ L L SN
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 221 QFSGRLPSTIGHSLPNIEYLTLAINN------LIGTIPDSLTNASKLIGLDLGSNSFSGH 274
Q P H++ + L +NN L + L N S + L L ++ S
Sbjct: 182 QIKEFSPGCF-HAIGRL--FGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLSTT 237
Query: 275 IPNTFGNLR--HLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILP 332
TF L+ +L +L + NNL + + W +L Y L+ N + +
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW--------LPQLEYFFLEYNNIQHLFS 289
Query: 333 -PLIGNFSASL----QSFYAYECKLGGSIPK----EIGNLRGLILLTLDFNDLNGTIPTS 383
L G F+ +SF L S+PK L+ L L ++ ND+ G
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISL-ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348
Query: 384 VGTLQQLQGLSLEDN-----NLEGSIPYDLCH-----LELNGNKLSGHIPPCLASLTSLR 433
L L+ LSL ++ L L H L L NK+S + L L
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408
Query: 434 ELRLGSNKLTSSIPSSLWS-LEYILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLS- 491
L LG N++ + W LE I EI + L+ L L R L
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468
Query: 492 -GNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKS----- 545
+ PS L +L L L++N + + L LE LDL NN + +
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528
Query: 546 ---LEALSHLKQFNVSQNMLEGEIPVK 569
L+ LSHL N+ N + EIPV+
Sbjct: 529 IYFLKGLSHLHILNLESNGFD-EIPVE 554
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 161 LSNLFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIFNIS-TIRVLNLH 218
LS+L L+L N D+IP E+ +L L+ + LG NNL+ L P ++FN +++ LNL
Sbjct: 535 LSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTL-PASVFNNQVSLKSLNLQ 592
Query: 219 SNQFSGRLPSTIGHSLPNIEYLTLAIN 245
N + G + N+ L + N
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRFN 619
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 147/567 (25%), Positives = 215/567 (37%), Gaps = 80/567 (14%)
Query: 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS 103
+ LNL+ L + S L SLDV N P KL LK ++ N+LS
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 104 GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSN 163
+ L + L +N+I I N+ F K N
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQK-----------------------N 127
Query: 164 LFDLDLRHNNLQD-QIPTEIGNLQNLESLALGTNNLSGLIPPA--IFNISTIRVLNLHSN 220
L LDL HN L ++ T++ L+NL+ L L N + L IF S+++ L L SN
Sbjct: 128 LITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 186
Query: 221 QFSGRLPSTIGHSLPNIEYLTLAINN------LIGTIPDSLTNASKLIGLDLGSNSFSGH 274
Q P H++ + L +NN L + L N S + L L ++ S
Sbjct: 187 QIKEFSPGCF-HAIGRL--FGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLSTT 242
Query: 275 IPNTFGNLR--HLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILP 332
TF L+ +L +L + NNL + + W +L Y L+ N + +
Sbjct: 243 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW--------LPQLEYFFLEYNNIQHLFS 294
Query: 333 -PLIGNFSASL----QSFYAYECKLGGSIPK----EIGNLRGLILLTLDFNDLNGTIPTS 383
L G F+ +SF L S+PK L+ L L ++ ND+ G
Sbjct: 295 HSLHGLFNVRYLNLKRSFTKQSISL-ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 353
Query: 384 VGTLQQLQGLSLEDN-----NLEGSIPYDLCH-----LELNGNKLSGHIPPCLASLTSLR 433
L L+ LSL ++ L L H L L NK+S + L L
Sbjct: 354 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 413
Query: 434 ELRLGSNKLTSSIPSSLWS-LEYILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLS- 491
L LG N++ + W LE I EI + L+ L L R L
Sbjct: 414 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 473
Query: 492 -GNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKS----- 545
+ PS L +L L L++N + + L LE LDL NN + +
Sbjct: 474 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 533
Query: 546 ---LEALSHLKQFNVSQNMLEGEIPVK 569
L+ LSHL N+ N + EIPV+
Sbjct: 534 IYFLKGLSHLHILNLESNGFD-EIPVE 559
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 161 LSNLFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIFNIS-TIRVLNLH 218
LS+L L+L N D+IP E+ +L L+ + LG NNL+ L P ++FN +++ LNL
Sbjct: 540 LSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTL-PASVFNNQVSLKSLNLQ 597
Query: 219 SNQFSGRLPSTIGHSLPNIEYLTLAIN 245
N + G + N+ L + N
Sbjct: 598 KNLITSVEKKVFGPAFRNLTELDMRFN 624
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 147/567 (25%), Positives = 215/567 (37%), Gaps = 80/567 (14%)
Query: 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS 103
+ LNL+ L + S L SLDV N P KL LK ++ N+LS
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 104 GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSN 163
+ L + L +N+I I N+ F K N
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQK-----------------------N 132
Query: 164 LFDLDLRHNNLQD-QIPTEIGNLQNLESLALGTNNLSGLIPPA--IFNISTIRVLNLHSN 220
L LDL HN L ++ T++ L+NL+ L L N + L IF S+++ L L SN
Sbjct: 133 LITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 191
Query: 221 QFSGRLPSTIGHSLPNIEYLTLAINN------LIGTIPDSLTNASKLIGLDLGSNSFSGH 274
Q P H++ + L +NN L + L N S + L L ++ S
Sbjct: 192 QIKEFSPGCF-HAIGRL--FGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLSTT 247
Query: 275 IPNTFGNLR--HLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILP 332
TF L+ +L +L + NNL + + W +L Y L+ N + +
Sbjct: 248 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW--------LPQLEYFFLEYNNIQHLFS 299
Query: 333 -PLIGNFSASL----QSFYAYECKLGGSIPK----EIGNLRGLILLTLDFNDLNGTIPTS 383
L G F+ +SF L S+PK L+ L L ++ ND+ G
Sbjct: 300 HSLHGLFNVRYLNLKRSFTKQSISL-ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 358
Query: 384 VGTLQQLQGLSLEDN-----NLEGSIPYDLCH-----LELNGNKLSGHIPPCLASLTSLR 433
L L+ LSL ++ L L H L L NK+S + L L
Sbjct: 359 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 418
Query: 434 ELRLGSNKLTSSIPSSLWS-LEYILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLS- 491
L LG N++ + W LE I EI + L+ L L R L
Sbjct: 419 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 478
Query: 492 -GNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKS----- 545
+ PS L +L L L++N + + L LE LDL NN + +
Sbjct: 479 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 538
Query: 546 ---LEALSHLKQFNVSQNMLEGEIPVK 569
L+ LSHL N+ N + EIPV+
Sbjct: 539 IYFLKGLSHLHILNLESNGFD-EIPVE 564
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 161 LSNLFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIFNIS-TIRVLNLH 218
LS+L L+L N D+IP E+ +L L+ + LG NNL+ L P ++FN +++ LNL
Sbjct: 545 LSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTL-PASVFNNQVSLKSLNLQ 602
Query: 219 SNQFSGRLPSTIGHSLPNIEYLTLAIN 245
N + G + N+ L + N
Sbjct: 603 KNLITSVEKKVFGPAFRNLTELDMRFN 629
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 21/186 (11%)
Query: 82 LPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLE 141
LP+ + L+ ++ + N L ++P I L++L+ +S+R + L++L
Sbjct: 119 LPDTXQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR----------ACPELTELP 167
Query: 142 MLQASFNVIDGNIPSGIGN-LSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSG 200
AS + SG L NL L L ++ +P I NLQNL+SL + + LS
Sbjct: 168 EPLASTDA------SGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA 220
Query: 201 LIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASK 260
L PAI ++ + L+L P G P + +NL+ T+P + ++
Sbjct: 221 LG-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQ 278
Query: 261 LIGLDL 266
L LDL
Sbjct: 279 LEKLDL 284
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 69/181 (38%), Gaps = 12/181 (6%)
Query: 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELN 414
+P GL LTL N L +P S+ +L +L+ LS+ +P L + +
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 415 GNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXXXXXXV 474
G L +L+ LRL + S+P+S+ +L+ L+ +
Sbjct: 177 GEH---------QGLVNLQSLRLEWTGI-RSLPASIANLQN-LKSLKIRNSPLSALGPAI 225
Query: 475 QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLS 534
L L LDL N P G L+ L L +P + L LE LDL
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285
Query: 535 G 535
G
Sbjct: 286 G 286
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 303 DQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYE---CKLGGSIPKE 359
+Q + L+ L N K++ L L NPL + + A LQS + ++ P
Sbjct: 79 NQITDLTPLKNLTKITELELSGNPLKNV------SAIAGLQSIKTLDLTSTQITDVTP-- 130
Query: 360 IGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY----DLCHLELNG 415
+ L L +L LD N + P + L LQ LS+ +N + P L L +
Sbjct: 131 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADD 188
Query: 416 NKLSGHIPPCLASLTSLRELRLGSNKLTSSIP 447
NK+S P LASL +L E+ L N+++ P
Sbjct: 189 NKISDISP--LASLPNLIEVHLKDNQISDVSP 218
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 29/139 (20%)
Query: 119 MSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQI 178
+ L++N IT P L NL+K+ L+ S N + N+ S I L ++ LDL + D
Sbjct: 74 LELKDNQITDLTP--LKNLTKITELELSGNPL-KNV-SAIAGLQSIKTLDLTSTQITDVT 129
Query: 179 P--------------------TEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLH 218
P + + L NL+ L++G N ++ L P A N+S + L
Sbjct: 130 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTPLA--NLSKLTTLRAD 187
Query: 219 SNQFSGRLPSTIGHSLPNI 237
N+ S P SLPN+
Sbjct: 188 DNKISDISPL---ASLPNL 203
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 151/376 (40%), Gaps = 43/376 (11%)
Query: 182 IGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241
+ NL+NLESL LG+N++S + P F ++VL+ +N S ++ L
Sbjct: 122 VHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYI-------SREDMRSLE 174
Query: 242 LAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSS 301
AIN + N + + G++LG+ + FG +L+V+ N TT+S
Sbjct: 175 QAINLSLN------FNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQS-- 226
Query: 302 ADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIG 361
W L + + +D + + L G S++S E +
Sbjct: 227 --LW--LGTFED--------IDDEDISSAM--LKGLCEMSVESLNLQEHRFSDISSTTFQ 272
Query: 362 NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLE-------GSIPYDLCHLELN 414
L L L L G +P+ + L L+ L L N+ + + P L HL +
Sbjct: 273 CFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFP-SLTHLYIR 330
Query: 415 GNKLSGHI-PPCLASLTSLRELRLGSNKLTSSIPSSLW--SLEYILEIXXXXXXXXXXXX 471
GN H+ CL L +L+ L L N + +S SL +L ++ +
Sbjct: 331 GNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQS 390
Query: 472 XXVQKLKVLRVLDLSRNQLSGNIP-STIGALVDLETLSLASNQFQGPIPESVGSLISLES 530
++ L +LDL+ +L N P S L L+ L+L + L L
Sbjct: 391 QAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRH 450
Query: 531 LDLSGNNF-SGKIPKS 545
L+L GN+F G I K+
Sbjct: 451 LNLKGNHFQDGTITKT 466
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 48 NLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGH--LPNELGKLGRLKFISFSFNKLSGS 105
N+ + LG LGNL +LD++ N+ +L L L+ ++ S N+ G
Sbjct: 332 NVKKLHLGVGCLEKLGNLQ---TLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGL 388
Query: 106 IPTWIGVLSKLQIMSLRNNNITGPIPNSLF-NLSKLEMLQASFNVIDGNIPSGIGNLSNL 164
+L+++ L + P S F NL L++L ++ +D + + L L
Sbjct: 389 QSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVL 448
Query: 165 FDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224
L+L+ N+ QD T+ LQ + SL + +S+ +L++ F
Sbjct: 449 RHLNLKGNHFQDGTITKTNLLQTVGSL-------------EVLILSSCGLLSIDQQAF-- 493
Query: 225 RLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270
HSL + ++ L+ N+L DSL++ K I L+L +NS
Sbjct: 494 -------HSLGKMSHVDLSHNSLTCDSIDSLSHL-KGIYLNLAANS 531
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 38/140 (27%)
Query: 136 NLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQN------- 187
+L L+ L + N+I +P NL+NL LDL N +Q T++ L
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 183
Query: 188 --------------------LESLALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQFSGRL 226
L+ LAL TN L +P IF+ +++++ + LH+N +
Sbjct: 184 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC-- 240
Query: 227 PSTIGHSLPNIEYLTLAINN 246
S P I+YL+ +N
Sbjct: 241 ------SCPRIDYLSRWLNK 254
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 498 IGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHL 552
IG L L+ L++A N Q +PE +L +LE LDLS N L L +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIR 213
+P GI SN L+L NN+Q +L +LE L LG N++ + A ++++
Sbjct: 69 VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN 126
Query: 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPD-SLTNASKLIGLDLGS 268
L L N + +PS L + L L NN I +IP + L+ LDLG
Sbjct: 127 TLELFDNWLT-VIPSGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRLDLGE 180
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 219 SNQFSG-----RLPSTIGHSLP-NIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFS 272
SNQFS R S + +P N YL L NN+ D+ + L L LG NS
Sbjct: 53 SNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112
Query: 273 GHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
F L LN L + N LT S A + +LS KL L L +NP+ I
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE--YLS------KLRELWLRNNPIESI 162
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 525 LISLESLDLSGNNFSGKIPKSLEALSHLKQFNV 557
L+ LE L++SGN+F P S LS LK+ V
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 38/140 (27%)
Query: 136 NLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQN------- 187
+L L+ L + N+I +P NL+NL LDL N +Q T++ L
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 182
Query: 188 --------------------LESLALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQFSGRL 226
L+ LAL TN L +P IF+ +++++ + LH+N +
Sbjct: 183 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC-- 239
Query: 227 PSTIGHSLPNIEYLTLAINN 246
S P I+YL+ +N
Sbjct: 240 ------SCPRIDYLSRWLNK 253
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 498 IGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHL 552
IG L L+ L++A N Q +PE +L +LE LDLS N L L +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 475 QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQ-GPIPES--VGSLISLESL 531
Q L +LRVL+LS L + + L DL L+L N FQ G I ++ + + SLE L
Sbjct: 421 QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEIL 480
Query: 532 DLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGE 565
LS N ++ L ++ ++S N L G+
Sbjct: 481 ILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGD 514
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 24/186 (12%)
Query: 85 ELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLF-NLSKLEML 143
+L L L++++ S+N+ G +L+++ + ++ P+S F NL L +L
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 144 QASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIP 203
S ++D + + L +L L+L+ N+ QD ++ LQ + SL
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLE----------- 478
Query: 204 PAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIG 263
I +S+ +L++ F H L N+ +L L+ N+L G D+L++ L
Sbjct: 479 --ILILSSCNLLSIDQQAF---------HGLRNVNHLDLSHNSLTGDSMDALSHLKGLY- 526
Query: 264 LDLGSN 269
L++ SN
Sbjct: 527 LNMASN 532
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 182 IGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSN 220
+ NL+NLESL LG+N++S + P F ++VL+ +N
Sbjct: 124 VHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNN 162
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 480 LRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539
++ LDL+ L+G +PS I + L+ L L +N F + S SL L + GN
Sbjct: 279 VQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRK 337
Query: 540 GKI-PKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
+ + LE L +L++ ++S + +E KN
Sbjct: 338 LDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKN 373
>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
pdb|2F8A|B Chain B, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
Length = 208
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 338 FSASLQSFYAYECK-LGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQ 391
+ S+QS YA+ + L G P +G+LRG +LL + L GT + +LQ
Sbjct: 19 YFQSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQ 73
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 38/140 (27%)
Query: 136 NLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQN------- 187
+L L+ L + N+I +P NL+NL LDL N +Q T++ L
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 183
Query: 188 --------------------LESLALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQFSGRL 226
L+ LAL TN L +P IF+ +++++ + LH+N +
Sbjct: 184 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC-- 240
Query: 227 PSTIGHSLPNIEYLTLAINN 246
S P I+YL+ +N
Sbjct: 241 ------SCPRIDYLSRWLNK 254
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 498 IGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHL 552
IG L L+ L++A N Q +PE +L +LE LDLS N L L +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 38/140 (27%)
Query: 136 NLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQN------- 187
+L L+ L + N+I +P NL+NL LDL N +Q T++ L
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 188 --------------------LESLALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQFSGRL 226
L+ LAL TN L +P IF+ +++++ + LH+N +
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC-- 238
Query: 227 PSTIGHSLPNIEYLTLAINN 246
S P I+YL+ +N
Sbjct: 239 ------SCPRIDYLSRWLNK 252
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 498 IGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHL 552
IG L L+ L++A N Q +PE +L +LE LDLS N L L +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 38/140 (27%)
Query: 136 NLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQN------- 187
+L L+ L + N+I +P NL+NL LDL N +Q T++ L
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 182
Query: 188 --------------------LESLALGTNNLSGLIPPAIFN-ISTIRVLNLHSNQFSGRL 226
L+ LAL TN L +P IF+ +++++ + LH+N +
Sbjct: 183 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC-- 239
Query: 227 PSTIGHSLPNIEYLTLAINN 246
S P I+YL+ +N
Sbjct: 240 ------SCPRIDYLSRWLNK 253
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 498 IGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHL 552
IG L L+ L++A N Q +PE +L +LE LDLS N L L +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 111/295 (37%), Gaps = 74/295 (25%)
Query: 112 VLSKLQIMSLRNNNI-TGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLR 170
V K+QI+ + NN+ T P+ SL KL L+ +N ++G +P+ G+ L L+L
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLA 361
Query: 171 HNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRV---------------- 214
+N + + G + +E+L+ N L + P IF+ ++ V
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHNKLKYI--PNIFDAKSVSVXSAIDFSYNEIGSVDG 419
Query: 215 ------------------LNLHSNQFSGRLPSTI-------------GHSLPNI------ 237
+NL +NQ S + P + G+ L I
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLXGNXLTEIPKNSLK 478
Query: 238 --------EYLTLAIN---NLIGTIPDSL--TNASKLIGLDLGSNSFSGHIPNTFGNLRH 284
YL +I+ N + + D T L+G+DL NSFS P N
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSST 537
Query: 285 LNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFS 339
L IR + + +W +T C L+ L + SN + + + N S
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWP--EGITLCPSLTQLQIGSNDIRKVNEKITPNIS 590
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 474 VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDL 533
+QK K L L+ NQL G +P+ G+ + L +L+LA NQ G +E+L
Sbjct: 326 LQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384
Query: 534 SGNNFSGKIPKSLEALS 550
+ N IP +A S
Sbjct: 385 AHNKLK-YIPNIFDAKS 400
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 474 VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDL 533
++ L LRVLDLS N+L+ +P+ +G+ L+ N +P G+L +L+ L +
Sbjct: 266 IKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGV 323
Query: 534 SGN 536
GN
Sbjct: 324 EGN 326
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIR 213
+P+ I NLSNL LDL HN L +P E+G+ L+ N ++ L P N+ ++
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQ 319
Query: 214 VLNLHSN 220
L + N
Sbjct: 320 FLGVEGN 326
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 188 LESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL 247
L L L N+L+ L P I N+S +RVL+L N+ + LP+ +G S ++Y +N+
Sbjct: 249 LTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTS-LPAELG-SCFQLKYFYF-FDNM 304
Query: 248 IGTIPDSLTNASKLIGLDLGSN 269
+ T+P N L L + N
Sbjct: 305 VTTLPWEFGNLCNLQFLGVEGN 326
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 85 ELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQ 144
+LG+L RL++IS + G L L+ ++L N+ IPN L L +LE L+
Sbjct: 137 DLGELKRLEYISEA--AFEG--------LVNLRYLNLGMCNLKD-IPN-LTALVRLEELE 184
Query: 145 ASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPP 204
S N +D P L++L L L H + +L++LE L L NNL L P
Sbjct: 185 LSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL-PH 243
Query: 205 AIF 207
+F
Sbjct: 244 DLF 246
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 104 GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLS 162
S+P G+ + Q + L NN IT P +L L+ L + N + IP+G+ L+
Sbjct: 25 ASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLT 81
Query: 163 NLFDLDLRHNNLQDQIPTEIGNLQNLESL 191
L LDL N+L+ IP G NL+SL
Sbjct: 82 QLTQLDLNDNHLK-SIPR--GAFDNLKSL 107
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 29/123 (23%)
Query: 386 TLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS 445
TL Q + L ++ IP D L LN N+++ P L +L++L SNKLT +
Sbjct: 15 TLVNCQNIRLA--SVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-A 71
Query: 446 IPSSLWSLEYILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLE 505
IP+ ++ KL L LDL+ N L +IP GA +L+
Sbjct: 72 IPTGVFD-----------------------KLTQLTQLDLNDNHLK-SIPR--GAFDNLK 105
Query: 506 TLS 508
+L+
Sbjct: 106 SLT 108
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 485 LSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNFSGKIP 543
L+ NQ++ P LV+L+ L SN+ IP V L L LDL+ N+ IP
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK-SIP 97
Query: 544 K----SLEALSHLKQFN 556
+ +L++L+H+ +N
Sbjct: 98 RGAFDNLKSLTHIYLYN 114
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 85 ELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQ 144
+LG+L RL++IS + G L L+ ++L N+ IPN L L +LE L+
Sbjct: 137 DLGELKRLEYISEA--AFEG--------LVNLRYLNLGMCNLKD-IPN-LTALVRLEELE 184
Query: 145 ASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPP 204
S N +D P L++L L L H + +L++LE L L NNL L P
Sbjct: 185 LSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL-PH 243
Query: 205 AIF 207
+F
Sbjct: 244 DLF 246
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 19/152 (12%)
Query: 303 DQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYE---CKLGGSIPKE 359
+Q + L+ L N K++ L L NPL + + A LQS + ++ P
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNV------SAIAGLQSIKTLDLTSTQITDVTP-- 124
Query: 360 IGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY----DLCHLELNG 415
+ L L +L LD N + P + L LQ LS+ + + P L L+ +
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182
Query: 416 NKLSGHIPPCLASLTSLRELRLGSNKLTSSIP 447
NK+S P LASL +L E+ L +N+++ P
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP 212
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 20/134 (14%)
Query: 225 RLPSTIGHSLPNIEYL-----TLAINNLIGTIPDSLTNASK--LIGLDLGSNSFSGHIPN 277
RLP I H P+ + +++ G ++ N + +GLD+ P
Sbjct: 66 RLPVAITHWRPHSSHCQRNVAAAKVHSTEGVAREAAANINNDWRVGLDVN--------PR 117
Query: 278 TFGNLRHLNVLS-IRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL----GGILP 332
N+R S + N E + DQ++F S CR S+ ++ PL L
Sbjct: 118 PEANMRASVAGSHSKVANFAAEKTYQDQYNFNSDTVECRMYSFRLVQKPPLHLDFKKALR 177
Query: 333 PLIGNFSASLQSFY 346
L NF++S + Y
Sbjct: 178 ALPRNFNSSTEHAY 191
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 480 LRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539
L+ LDL+ LS +PS + L L+ L L++N+F+ S + SL L + GN
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 540 GKI-PKSLEALSHLKQFNVSQNMLE 563
++ LE L +L++ ++S + +E
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIE 363
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 89 LGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNI-TGPIP--NSLFNLSKLEMLQA 145
L LK ++ S + L S L LQ ++L+ N+ G I NSL L +LE+L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
Query: 146 SFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPA 205
SF + +L + +DL HN L + +L+ + L L +N++S ++P
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542
Query: 206 IFNISTIRVLNLHSN 220
+ +S R +NL N
Sbjct: 543 LPILSQQRTINLRQN 557
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 12/149 (8%)
Query: 75 LNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSL 134
LN G LPN + + FSFN L T L L + L I ++
Sbjct: 24 LNEIPGTLPN------STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF 77
Query: 135 FNLSKLEMLQASFN---VIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESL 191
+ +L+ L + N + SG L +LF + +++ D IP + N + LESL
Sbjct: 78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI-DFIP--LHNQKTLESL 134
Query: 192 ALGTNNLSGLIPPAIFNISTIRVLNLHSN 220
LG+N++S + P F ++VL+ +N
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNN 163
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-ISTI 212
+ S + ++L L L N + L +L+ LAL TN L +P IF+ ++++
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKS-VPDGIFDRLTSL 349
Query: 213 RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAIN 245
+ + LH+N + S P I+YL+ +N
Sbjct: 350 QKIWLHTNPWDC--------SCPRIDYLSRWLN 374
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 107/262 (40%), Gaps = 31/262 (11%)
Query: 65 LSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPT--WIGVLSKLQIMSLR 122
LS L+ L + N F L L+ ++ + L G++ + + L+ L+++ LR
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 123 NNNITGPIPNSLF-NLSKLEMLQASFNVIDGNIPSGIGNL--SNLFDLDLRHNNLQDQIP 179
+NNI P S F N+ + +L +FN + + N + L L LQD
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197
Query: 180 TEIGNLQ--------NLESLALGTNNLSGLIPPAIFN-ISTIRVLNL-HSNQFSGRLPST 229
+G + ++ +L L N + F+ I+ ++ +L SN ++ + S+
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN--MGSS 255
Query: 230 IGHS--------------LPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHI 275
GH+ ++ L+ + + + ++ + L L L N +
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315
Query: 276 PNTFGNLRHLNVLSIRTNNLTT 297
N F L HL L++ TN L +
Sbjct: 316 DNAFWGLTHLKELALDTNQLKS 337
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 37/88 (42%)
Query: 480 LRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539
++ DLS++++ + S DLE L+LA N+ + L L+ L L N
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK 336
Query: 540 GKIPKSLEALSHLKQFNVSQNMLEGEIP 567
+ L+ L++ + N + P
Sbjct: 337 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 364
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 135 FNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALG 194
NL + E+ + +DG +P L LDL HN LQ +P L L L +
Sbjct: 60 LNLDRCELTKLQ---VDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108
Query: 195 TNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL 247
N L+ L A+ + ++ L L N+ LP + P +E L+LA NNL
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 38 DSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISF 97
D H ++++L L LG T+P L LDV+ N L LG L+ +
Sbjct: 83 DLSHNQLQSLPL----LGQTLPA-------LTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 98 SFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN-LSKLEMLQASFNVIDGNIPS 156
N+L P + KL+ +SL NNN+T +P L N L L+ L N + IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL-YTIPK 189
Query: 157 GI 158
G
Sbjct: 190 GF 191
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 475 QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLS 534
Q L L VLD+S N+L+ + L +L+ L L N+ + P + LE L L+
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 535 GNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSF 572
NN + L L +L + +N L IP KG F
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFF 192
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 87 GKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQAS 146
G L L + S N+L S+P L L ++ + N +T +L L +L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 147 FNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAI 206
N + P + L L L +NNL + + L+NL++L L N+L IP
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Query: 207 FNISTIRVLNLHSNQF 222
F + LH N +
Sbjct: 192 FGSHLLPFAFLHGNPW 207
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 135 FNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALG 194
NL + E+ + +DG +P L LDL HN LQ +P L L L +
Sbjct: 61 LNLDRCELTKLQ---VDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 109
Query: 195 TNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL 247
N L+ L A+ + ++ L L N+ LP + P +E L+LA NNL
Sbjct: 110 FNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 161
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 38 DSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISF 97
D H ++++L L LG T+P L LDV+ N L LG L+ +
Sbjct: 84 DLSHNQLQSLPL----LGQTLP-------ALTVLDVSFNRLTSLPLGALRGLGELQELYL 132
Query: 98 SFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN-LSKLEMLQASFNVIDGNIPS 156
N+L P + KL+ +SL NNN+T +P L N L L+ L N + IP
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL-YTIPK 190
Query: 157 GI 158
G
Sbjct: 191 GF 192
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 475 QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLS 534
Q L L VLD+S N+L+ + L +L+ L L N+ + P + LE L L+
Sbjct: 98 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 157
Query: 535 GNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSF 572
NN + L L +L + +N L IP KG F
Sbjct: 158 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFF 193
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 87 GKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQAS 146
G L L + S N+L S+P L L ++ + N +T +L L +L+ L
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 147 FNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAI 206
N + P + L L L +NNL + + L+NL++L L N+L IP
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 192
Query: 207 FNISTIRVLNLHSNQF 222
F + LH N +
Sbjct: 193 FGSHLLPFAFLHGNPW 208
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 382 TSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSN 440
+ GTL L +L + P D L L GN L+ P L +L +LR LG+N
Sbjct: 7 SCAGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 135 FNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALG 194
NL + E+ + +DG +P L LDL HN LQ +P L L L +
Sbjct: 60 LNLDRAELTKLQ---VDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108
Query: 195 TNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL 247
N L+ L A+ + ++ L L N+ LP + P +E L+LA NNL
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 38 DSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISF 97
D H ++++L L LG T+P L LDV+ N L LG L+ +
Sbjct: 83 DLSHNQLQSLPL----LGQTLPA-------LTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 98 SFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN-LSKLEMLQASFNVIDGNIPS 156
N+L P + KL+ +SL NNN+T +P L N L L+ L N + IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL-YTIPK 189
Query: 157 GI 158
G
Sbjct: 190 GF 191
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 475 QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLS 534
Q L L VLD+S N+L+ + L +L+ L L N+ + P + LE L L+
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 535 GNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSF 572
NN + L L +L + +N L IP KG F
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFF 192
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 15/171 (8%)
Query: 390 LQGLSLEDNNLEG--SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS--S 445
LQ LS+ DN L ++P +LC L N+L+ P L S L+EL + N+L S +
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSL--PMLPS--GLQELSVSDNQLASLPT 198
Query: 446 IPSSL---WSLEYILEIXXXXXXXXXXXXXXVQKLKVLRVL--DLSRNQLSGNIPSTIGA 500
+PS L W+ L +L L VL +L +SGN +++
Sbjct: 199 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM 258
Query: 501 LVD-LETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALS 550
L L +LS+ NQ +PES+ L S +++L GN S + ++L ++
Sbjct: 259 LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREIT 308
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 135 FNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALG 194
NL + E+ + +DG +P L LDL HN LQ +P L L L +
Sbjct: 60 LNLDRAELTKLQ---VDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108
Query: 195 TNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL 247
N L+ L A+ + ++ L L N+ LP + P +E L+LA NNL
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 38 DSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISF 97
D H ++++L L LG T+P L LDV+ N L LG L+ +
Sbjct: 83 DLSHNQLQSLPL----LGQTLP-------ALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 98 SFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN-LSKLEMLQASFNVIDGNIPS 156
N+L P + KL+ +SL NNN+T +P L N L L+ L N + IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL-YTIPK 189
Query: 157 GI 158
G
Sbjct: 190 GF 191
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 475 QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLS 534
Q L L VLD+S N+L+ + L +L+ L L N+ + P + LE L L+
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 535 GNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSF 572
NN + L L +L + +N L IP KG F
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFF 192
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 135 FNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALG 194
NL + E+ + +DG +P L LDL HN LQ +P L L L +
Sbjct: 60 LNLDRAELTKLQ---VDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108
Query: 195 TNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL 247
N L+ L A+ + ++ L L N+ LP + P +E L+LA NNL
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 38 DSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISF 97
D H ++++L L LG T+P L LDV+ N L LG L+ +
Sbjct: 83 DLSHNQLQSLPL----LGQTLP-------ALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 98 SFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN-LSKLEMLQASFNVIDGNIPS 156
N+L P + KL+ +SL NNN+T +P L N L L+ L N + IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL-YTIPK 189
Query: 157 GI 158
G
Sbjct: 190 GF 191
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 475 QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLS 534
Q L L VLD+S N+L+ + L +L+ L L N+ + P + LE L L+
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 535 GNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSF 572
NN + L L +L + +N L IP KG F
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFF 192
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 210 STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSN 269
+T +VL+L+ NQ + +L + SL + YL LA+N L +KL L L N
Sbjct: 40 TTTQVLHLYINQIT-KLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHIN 98
Query: 270 SFSGHIPNTFGNLRHLNVLSIRTNNLTTESS 300
F NL+ L + + N E S
Sbjct: 99 QLKSIPMGVFDNLKSLTHIYLFNNPWDCECS 129
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 486 SRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKS 545
SR L G++ S LV L A F P P +V ++ ++ S G +S P+
Sbjct: 122 SRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVANVMSAVCFGCRYSHDDPEF 181
Query: 546 LEALSHLKQF 555
E LSH ++F
Sbjct: 182 RELLSHNEEF 191
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 479 VLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNF 538
++ LDLS N+++ + A +L+ L L S++ ++ SL SLE LDLS N+
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 112
Query: 539 SGKIPKSLEALSHLKQFNVSQN 560
S LS LK N+ N
Sbjct: 113 SSLSSSWFGPLSSLKYLNLMGN 134
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 89 LGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLF-NLSKLEMLQASF 147
LG L+ + S N LS +W G LS L+ ++L N SLF NL+ L+ L+
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI-- 156
Query: 148 NVIDGNIPS-------GIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSG 200
GN+ + L++L +L+++ +L++ + +++++ L L + +
Sbjct: 157 ----GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 212
Query: 201 LIPPAIFNISTIRVLNLH 218
L+ +S++R L L
Sbjct: 213 LLEIFADILSSVRYLELR 230
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 479 VLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNF 538
++ LDLS N+++ + A +L+ L L S++ ++ SL SLE LDLS N+
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 539 SGKIPKSLEALSHLKQFNVSQN 560
S LS LK N+ N
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGN 108
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 89 LGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLF-NLSKLEMLQASF 147
LG L+ + S N LS +W G LS L+ ++L N SLF NL+ L+ L+
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI-- 130
Query: 148 NVIDGNIPS-------GIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSG 200
GN+ + L++L +L+++ +L++ + +++++ L L + +
Sbjct: 131 ----GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186
Query: 201 LIPPAIFNISTIRVLNLH 218
L+ +S++R L L
Sbjct: 187 LLEIFADILSSVRYLELR 204
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 20/164 (12%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNIT----GPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGN 160
S+P++ +L L +NN++ P L NL L + N I + N
Sbjct: 36 SLPSYTALLD------LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 161 LSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSN 220
L L DL N+L +LQ LE L L N++ + A +++ ++ L L N
Sbjct: 90 LRYL---DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Query: 221 QFSGRLPSTI---GHSLPNIEYLTLAINNLIGTIPDSLTNASKL 261
Q S R P + G+ LP + L L+ N L +P LT+ KL
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKL-KKLP--LTDLQKL 186
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 1/142 (0%)
Query: 398 NNLEGSIPYDLCHLELNGNKLSG-HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYI 456
N + IP L LN N+ + L LR++ +NK+T + +
Sbjct: 24 NKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83
Query: 457 LEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG 516
EI + L+ L+ L L N+++ + L + LSL NQ
Sbjct: 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143
Query: 517 PIPESVGSLISLESLDLSGNNF 538
P + +L SL +L+L N F
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPF 165
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 496 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQF 555
+ + L L+TLSL NQ +P + L L++L LS N+ S L AL+ LK
Sbjct: 145 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-----DLRALAGLKNL 197
Query: 556 NV 557
+V
Sbjct: 198 DV 199
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 496 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQF 555
+ + L L+TLSL NQ +P + L L++L LS N+ S L AL+ LK
Sbjct: 168 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-----DLRALAGLKNL 220
Query: 556 NV 557
+V
Sbjct: 221 DV 222
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 496 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQF 555
+ + L L+TLSL NQ +P + L L++L LS N+ S L AL+ LK
Sbjct: 168 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-----DLRALAGLKNL 220
Query: 556 NV 557
+V
Sbjct: 221 DV 222
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 496 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQF 555
+ + L L+TLSL NQ +P + L L++L LS N+ S L AL+ LK
Sbjct: 168 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-----DLRALAGLKNL 220
Query: 556 NV 557
+V
Sbjct: 221 DV 222
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 496 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQF 555
+ + L L+TLSL NQ +P + L L++L LS N+ S L AL+ LK
Sbjct: 147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-----DLRALAGLKNL 199
Query: 556 NV 557
+V
Sbjct: 200 DV 201
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 146 SFNVIDGNIPS--GIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL-- 201
+FN + NI S G+ +NL +L L HN + D P + +L LE L++ N L L
Sbjct: 45 NFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG 102
Query: 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKL 261
IP A + L L +N+ R ++ H L N+E L++ N L + L SKL
Sbjct: 103 IPSA-----CLSRLFLDNNEL--RDTDSLIH-LKNLEILSIRNNKLKSIV--MLGFLSKL 152
Query: 262 IGLDLGSNSFS 272
LDL N +
Sbjct: 153 EVLDLHGNEIT 163
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 496 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQF 555
+ + L L+TLSL NQ + +P + L L++L LS N+ S L AL LK
Sbjct: 148 TVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHIS-----DLRALRGLKNL 200
Query: 556 NV 557
+V
Sbjct: 201 DV 202
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 496 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQF 555
+ + L L+TLSL NQ +P + L L++L LS N+ S L AL+ LK
Sbjct: 170 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-----DLRALAGLKNL 222
Query: 556 NV 557
+V
Sbjct: 223 DV 224
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 496 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQF 555
+ + L L+TLSL NQ +P + L L++L LS N+ S L AL+ LK
Sbjct: 148 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-----DLRALAGLKNL 200
Query: 556 NV 557
+V
Sbjct: 201 DV 202
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 496 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQF 555
+ + L L+TLSL NQ +P + L L++L LS N+ S L AL+ LK
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-----DLRALAGLKNL 202
Query: 556 NV 557
+V
Sbjct: 203 DV 204
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 38 DSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISF 97
D H ++++L L LG T+P L LDV+ N L LG L+ +
Sbjct: 83 DLSHNQLQSLPL----LGQTLPA-------LTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 98 SFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN-LSKLEMLQASFNVIDGNIPS 156
N+L P + KL+ +SL NN++T +P L N L L+ L N + IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLTE-LPAGLLNGLENLDTLLLQENSL-YTIPK 189
Query: 157 GI 158
G
Sbjct: 190 GF 191
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 496 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQF 555
+ + L L+TLSL NQ +P + L L++L LS N+ S L AL+ LK
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-----DLRALAGLKNL 202
Query: 556 NV 557
+V
Sbjct: 203 DV 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,658,890
Number of Sequences: 62578
Number of extensions: 624112
Number of successful extensions: 2256
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1280
Number of HSP's gapped (non-prelim): 448
length of query: 574
length of database: 14,973,337
effective HSP length: 104
effective length of query: 470
effective length of database: 8,465,225
effective search space: 3978655750
effective search space used: 3978655750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)