Query 036593
Match_columns 574
No_of_seqs 276 out of 3417
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 03:35:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.6E-59 3.4E-64 521.6 40.0 540 20-573 48-594 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.5E-52 5.4E-57 464.0 35.6 508 40-561 91-605 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.9E-39 8.5E-44 304.5 7.8 368 92-537 80-450 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.8E-38 6.1E-43 298.8 5.7 367 115-559 79-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.3E-38 5E-43 286.5 -16.5 477 43-563 46-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.3E-36 2.9E-41 275.1 -15.1 481 40-556 66-557 (565)
7 KOG0618 Serine/threonine phosp 100.0 5.1E-33 1.1E-37 277.1 -4.0 480 44-560 23-510 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 1.7E-32 3.8E-37 261.8 -5.2 366 66-539 7-375 (1255)
9 KOG0444 Cytoskeletal regulator 100.0 3.8E-31 8.1E-36 252.7 -3.3 387 41-511 6-395 (1255)
10 KOG0618 Serine/threonine phosp 100.0 1.3E-31 2.7E-36 267.2 -8.9 478 46-561 2-487 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.9E-23 4E-28 232.9 29.4 321 106-465 580-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.5E-22 7.6E-27 222.8 27.7 320 129-539 579-906 (1153)
13 KOG4237 Extracellular matrix p 99.9 6.1E-25 1.3E-29 199.5 -4.2 274 45-329 49-360 (498)
14 KOG4237 Extracellular matrix p 99.9 1.5E-24 3.2E-29 196.9 -3.3 416 90-560 67-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 4.6E-19 1E-23 183.5 17.6 259 237-568 203-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 7.8E-18 1.7E-22 174.5 16.1 222 259-544 242-463 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 1.6E-19 3.4E-24 175.8 -4.1 285 240-562 3-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 1.2E-16 2.7E-21 166.7 13.6 180 341-539 242-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-18 2.7E-23 169.4 -2.7 177 47-223 3-206 (319)
20 PRK15370 E3 ubiquitin-protein 99.7 2.1E-16 4.5E-21 165.1 10.3 125 430-568 346-475 (754)
21 KOG0617 Ras suppressor protein 99.6 2.9E-17 6.4E-22 132.5 -4.2 163 62-230 29-192 (264)
22 KOG0617 Ras suppressor protein 99.6 5.8E-17 1.3E-21 130.8 -4.5 163 362-548 31-194 (264)
23 KOG4658 Apoptotic ATPase [Sign 99.5 3.3E-14 7.2E-19 151.1 4.3 162 9-173 479-653 (889)
24 KOG1909 Ran GTPase-activating 99.4 1E-14 2.3E-19 131.6 -4.9 195 359-562 87-310 (382)
25 KOG1909 Ran GTPase-activating 99.3 8.6E-14 1.9E-18 125.8 -6.0 249 256-539 27-311 (382)
26 KOG1259 Nischarin, modulator o 99.2 2.4E-12 5.1E-17 114.0 1.8 203 355-565 205-414 (490)
27 PF14580 LRR_9: Leucine-rich r 99.2 6.2E-12 1.3E-16 107.0 3.0 127 426-557 15-147 (175)
28 KOG3207 Beta-tubulin folding c 99.2 4E-12 8.6E-17 118.4 -0.6 67 258-330 120-187 (505)
29 KOG3207 Beta-tubulin folding c 99.2 4.1E-12 8.8E-17 118.4 -0.8 42 257-298 299-341 (505)
30 KOG1259 Nischarin, modulator o 99.1 1.8E-11 3.8E-16 108.5 2.1 131 386-540 282-413 (490)
31 PLN03150 hypothetical protein; 99.1 2.9E-10 6.3E-15 119.0 10.7 119 31-149 403-526 (623)
32 PF14580 LRR_9: Leucine-rich r 99.0 1.8E-10 3.9E-15 98.1 4.7 110 451-565 16-128 (175)
33 COG4886 Leucine-rich repeat (L 99.0 2.5E-10 5.4E-15 114.2 6.6 179 364-568 116-295 (394)
34 KOG4658 Apoptotic ATPase [Sign 99.0 1.1E-10 2.4E-15 124.6 3.1 248 41-293 544-804 (889)
35 KOG0532 Leucine-rich repeat (L 99.0 1.1E-11 2.4E-16 119.3 -5.6 167 346-539 81-247 (722)
36 KOG0532 Leucine-rich repeat (L 99.0 2.2E-11 4.7E-16 117.3 -4.6 194 42-245 75-270 (722)
37 COG4886 Leucine-rich repeat (L 98.9 3E-09 6.5E-14 106.5 7.0 196 46-251 97-293 (394)
38 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.5E-14 75.6 3.4 59 503-561 2-60 (61)
39 PLN03150 hypothetical protein; 98.9 4.5E-09 9.7E-14 110.1 7.9 109 432-540 420-529 (623)
40 PF13855 LRR_8: Leucine rich r 98.9 1.9E-09 4.1E-14 75.3 3.3 61 478-538 1-61 (61)
41 KOG2120 SCF ubiquitin ligase, 98.6 9.1E-10 2E-14 97.8 -4.8 110 42-151 159-273 (419)
42 KOG0531 Protein phosphatase 1, 98.6 5E-09 1.1E-13 105.0 -0.7 62 234-297 71-132 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 7.8E-10 1.7E-14 98.2 -7.3 227 42-293 136-373 (419)
44 KOG0531 Protein phosphatase 1, 98.5 2.6E-08 5.7E-13 99.8 0.3 192 361-563 92-290 (414)
45 KOG1859 Leucine-rich repeat pr 98.4 7.2E-09 1.6E-13 103.1 -5.3 126 408-539 166-292 (1096)
46 KOG4341 F-box protein containi 98.4 1.1E-08 2.3E-13 95.5 -5.2 63 63-125 161-227 (483)
47 COG5238 RNA1 Ran GTPase-activa 98.4 3.1E-08 6.8E-13 87.0 -2.0 196 358-563 86-316 (388)
48 KOG2982 Uncharacterized conser 98.3 1.1E-07 2.3E-12 84.9 0.5 187 136-329 69-263 (418)
49 KOG2982 Uncharacterized conser 98.3 1.8E-07 3.9E-12 83.5 1.5 233 67-323 46-287 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.3 3.6E-08 7.8E-13 86.7 -3.0 250 256-540 27-317 (388)
51 KOG1859 Leucine-rich repeat pr 98.2 2E-08 4.2E-13 100.1 -7.6 181 59-247 102-291 (1096)
52 KOG4579 Leucine-rich repeat (L 98.2 4.3E-08 9.3E-13 77.0 -4.5 136 431-570 28-166 (177)
53 KOG4341 F-box protein containi 98.2 3.9E-08 8.4E-13 91.8 -6.8 106 428-533 344-459 (483)
54 PF13306 LRR_5: Leucine rich r 98.1 5.9E-06 1.3E-10 68.1 6.6 126 422-553 4-129 (129)
55 PRK15386 type III secretion pr 98.1 1.6E-05 3.5E-10 76.6 9.4 132 387-536 51-187 (426)
56 KOG1644 U2-associated snRNP A' 98.1 5.4E-06 1.2E-10 70.1 5.4 82 456-539 44-126 (233)
57 KOG3665 ZYG-1-like serine/thre 98.1 4.1E-07 8.9E-12 95.1 -2.4 196 43-241 61-281 (699)
58 PF13306 LRR_5: Leucine rich r 98.0 1.6E-05 3.4E-10 65.5 7.2 101 424-529 29-129 (129)
59 PRK15386 type III secretion pr 98.0 4.6E-05 9.9E-10 73.6 10.0 32 430-464 156-187 (426)
60 KOG1644 U2-associated snRNP A' 98.0 1.6E-05 3.5E-10 67.3 5.7 80 410-491 46-126 (233)
61 KOG4579 Leucine-rich repeat (L 97.7 1.5E-06 3.3E-11 68.4 -3.4 110 454-567 27-139 (177)
62 PF12799 LRR_4: Leucine Rich r 97.7 2E-05 4.3E-10 50.1 2.0 36 479-515 2-37 (44)
63 PF12799 LRR_4: Leucine Rich r 97.7 4.2E-05 9.1E-10 48.6 2.9 36 503-539 2-37 (44)
64 KOG3665 ZYG-1-like serine/thre 97.6 1.4E-05 3.1E-10 83.8 -0.2 65 279-345 216-280 (699)
65 KOG2123 Uncharacterized conser 97.4 5.3E-06 1.1E-10 73.6 -4.9 99 454-556 19-123 (388)
66 KOG2739 Leucine-rich acidic nu 97.3 0.00013 2.8E-09 64.7 2.4 39 501-539 90-129 (260)
67 KOG1947 Leucine rich repeat pr 97.3 1.3E-05 2.9E-10 82.9 -4.8 39 281-325 186-224 (482)
68 KOG2739 Leucine-rich acidic nu 97.2 0.00021 4.5E-09 63.5 2.4 86 426-511 61-152 (260)
69 KOG1947 Leucine rich repeat pr 97.0 3.8E-05 8.2E-10 79.5 -4.4 133 86-218 184-329 (482)
70 KOG2123 Uncharacterized conser 96.8 3.1E-05 6.8E-10 68.9 -5.8 100 429-532 18-123 (388)
71 KOG4308 LRR-containing protein 95.6 2.2E-05 4.8E-10 78.7 -15.1 117 424-540 166-304 (478)
72 PF00560 LRR_1: Leucine Rich R 95.6 0.0061 1.3E-07 32.0 1.0 18 551-569 1-18 (22)
73 KOG4308 LRR-containing protein 94.9 0.00012 2.6E-09 73.6 -12.7 88 429-516 203-304 (478)
74 KOG3864 Uncharacterized conser 94.6 0.0045 9.8E-08 52.9 -2.0 84 455-538 102-188 (221)
75 KOG3864 Uncharacterized conser 94.4 0.008 1.7E-07 51.5 -0.8 83 42-124 101-186 (221)
76 PF00560 LRR_1: Leucine Rich R 93.7 0.032 6.9E-07 29.2 0.9 11 68-78 2-12 (22)
77 PF13504 LRR_7: Leucine rich r 92.2 0.092 2E-06 25.4 1.2 12 551-562 2-13 (17)
78 PF13516 LRR_6: Leucine Rich r 88.5 0.097 2.1E-06 28.0 -0.6 13 479-491 3-15 (24)
79 KOG0473 Leucine-rich repeat pr 88.4 0.01 2.2E-07 51.9 -6.8 87 86-175 38-124 (326)
80 KOG0473 Leucine-rich repeat pr 87.6 0.019 4.2E-07 50.3 -5.6 86 475-563 39-124 (326)
81 KOG4242 Predicted myosin-I-bin 87.3 3.9 8.5E-05 40.4 8.9 252 316-572 215-511 (553)
82 smart00369 LRR_TYP Leucine-ric 86.3 0.63 1.4E-05 25.3 1.9 13 479-491 3-15 (26)
83 smart00370 LRR Leucine-rich re 86.3 0.63 1.4E-05 25.3 1.9 13 479-491 3-15 (26)
84 PF08263 LRRNT_2: Leucine rich 78.7 1 2.2E-05 28.3 0.9 20 19-38 22-43 (43)
85 smart00365 LRR_SD22 Leucine-ri 72.0 3.3 7.2E-05 22.6 1.7 15 550-564 2-16 (26)
86 smart00364 LRR_BAC Leucine-ric 62.3 5.6 0.00012 21.7 1.3 13 503-515 3-15 (26)
87 smart00368 LRR_RI Leucine rich 62.0 3.4 7.3E-05 23.0 0.5 13 479-491 3-15 (28)
88 smart00367 LRR_CC Leucine-rich 53.6 9.7 0.00021 20.6 1.4 11 502-512 2-12 (26)
89 KOG4242 Predicted myosin-I-bin 51.2 78 0.0017 31.8 7.8 133 87-221 132-279 (553)
90 KOG3763 mRNA export factor TAP 48.3 5.8 0.00013 40.1 -0.1 17 427-443 215-231 (585)
91 KOG3763 mRNA export factor TAP 42.5 11 0.00023 38.3 0.7 65 452-516 216-284 (585)
92 PF08186 Wound_ind: Wound-indu 25.2 38 0.00083 21.0 0.9 14 2-15 1-14 (46)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-59 Score=521.59 Aligned_cols=540 Identities=35% Similarity=0.582 Sum_probs=497.3
Q ss_pred cccccCCCCccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchh-hcCCCCCCEEEcc
Q 036593 20 LYLLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNE-LGKLGRLKFISFS 98 (574)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~l~ 98 (574)
++.|....++|.|.|+.|.. ..+++.|+++++.+.+.++..|..+++|++|+|++|.+.+.+|.. +..+.+|++|+++
T Consensus 48 ~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls 126 (968)
T PLN00113 48 LSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126 (968)
T ss_pred CCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECc
Confidence 56798888999999999975 468999999999999999999999999999999999998888865 4599999999999
Q ss_pred CCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCC
Q 036593 99 FNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQI 178 (574)
Q Consensus 99 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 178 (574)
+|++.+..|. +.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+....
T Consensus 127 ~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 204 (968)
T PLN00113 127 NNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204 (968)
T ss_pred CCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC
Confidence 9999877774 56899999999999998788989999999999999999998889999999999999999999998888
Q ss_pred CccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCC
Q 036593 179 PTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNA 258 (574)
Q Consensus 179 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 258 (574)
+..+.++++|++|++++|.+....|..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|.+....+..+..+
T Consensus 205 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l 283 (968)
T PLN00113 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSL 283 (968)
T ss_pred ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhc
Confidence 99999999999999999999988999999999999999999999888888776 89999999999999988888888999
Q ss_pred CCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhh
Q 036593 259 SKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF 338 (574)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 338 (574)
++|++|++++|.+.+..|..+.++++|+.|++++|.+... .+..+..+++|+.|++++|.+.+..+..++..
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK--------IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc--------CChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 9999999999999888898999999999999999988764 23447889999999999999998888877776
Q ss_pred ccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCC------CCceEE
Q 036593 339 SASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY------DLCHLE 412 (574)
Q Consensus 339 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------~l~~l~ 412 (574)
. +++.+++++|.+....|..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|++++..|. .++.++
T Consensus 356 ~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 356 N-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred C-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 4 899999999999988999899999999999999999999999999999999999999999987764 577999
Q ss_pred ccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccc
Q 036593 413 LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSG 492 (574)
Q Consensus 413 l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 492 (574)
+++|.+++..+..+..+++|+.|++++|++.+..+..+ ..++|++|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence 99999999888888899999999999999987777665 46899999999999998889889999999999999999998
Q ss_pred cCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCCCCC
Q 036593 493 NIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSF 572 (574)
Q Consensus 493 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~~~~ 572 (574)
..|..+.++++|++|+|++|.+++..|..+..+++|+.|++++|++...+|..+..+++|+.+++++|++++.+|..+.|
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 593 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred C
Q 036593 573 K 573 (574)
Q Consensus 573 ~ 573 (574)
.
T Consensus 594 ~ 594 (968)
T PLN00113 594 L 594 (968)
T ss_pred c
Confidence 4
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-52 Score=464.00 Aligned_cols=508 Identities=35% Similarity=0.541 Sum_probs=462.1
Q ss_pred CCCcEEEEEcCCCCCccccCCCc-cCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCE
Q 036593 40 RHQRVKALNLSGMGLGGTIPPHL-GNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQI 118 (574)
Q Consensus 40 ~~~~~~~l~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 118 (574)
..+.+++|++++|.+.+.+|..+ ..+++|++|++++|.+.+.+|. ..+++|++|++++|.+.+..|..++++++|++
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 35789999999999988788665 4999999999999999877774 56899999999999999899999999999999
Q ss_pred EEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcc
Q 036593 119 MSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNL 198 (574)
Q Consensus 119 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 198 (574)
|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+....+..+.++++|++|++++|.+
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 99999999888899999999999999999999888999999999999999999999888899999999999999999999
Q ss_pred cccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCC
Q 036593 199 SGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNT 278 (574)
Q Consensus 199 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 278 (574)
.+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 988999999999999999999999888888776 7899999999999998888888999999999999999998888888
Q ss_pred ccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCc
Q 036593 279 FGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPK 358 (574)
Q Consensus 279 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 358 (574)
+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+....+..+.... +++.+.+.+|.+....|.
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~--------~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGE--------IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPK 398 (968)
T ss_pred HhcCCCCCEEECcCCCCcCc--------CChHHhCCCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCH
Confidence 99999999999999988754 344578899999999999999888787776654 899999999999999999
Q ss_pred cccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCC------CCCceEEccCCeeeecCCccCcCCCCC
Q 036593 359 EIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP------YDLCHLELNGNKLSGHIPPCLASLTSL 432 (574)
Q Consensus 359 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------~~l~~l~l~~~~l~~~~~~~~~~~~~L 432 (574)
.+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.+| ..++.+++++|.+.+..|..+ ..++|
T Consensus 399 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L 477 (968)
T PLN00113 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRL 477 (968)
T ss_pred HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccc
Confidence 99999999999999999998889999999999999999999998665 468899999999998888766 46899
Q ss_pred CeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCC
Q 036593 433 RELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASN 512 (574)
Q Consensus 433 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 512 (574)
+.|++++|++.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..++++++|+.|++++|
T Consensus 478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557 (968)
T ss_pred eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence 99999999999889999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred cccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCc
Q 036593 513 QFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNM 561 (574)
Q Consensus 513 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~ 561 (574)
++.+..|..+..+++|+.+++++|++.+.+|.. +.+.++....+.+|+
T Consensus 558 ~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 558 QLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred cccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 999999999999999999999999999877754 334455556666776
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-39 Score=304.51 Aligned_cols=368 Identities=24% Similarity=0.282 Sum_probs=261.4
Q ss_pred CCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccC
Q 036593 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRH 171 (574)
Q Consensus 92 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 171 (574)
-+.|++++|++.++.+..|.++++|+.+++.+|.+. .+|.......+|+.|+|.+|.|.+.-.+.++-++.|+.||++.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 346888888888888888888888888888888877 6777666677788888888888766677788888888888888
Q ss_pred CcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecC
Q 036593 172 NNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTI 251 (574)
Q Consensus 172 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 251 (574)
|.++++....|..-.++++|++++|+|+......|..+.+|-.|.++.|+++ .+|...+++++.|+.|++..|.+....
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeeh
Confidence 8888777777877788888888888888887788888888888888888888 788777777888888888777776554
Q ss_pred CcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCC
Q 036593 252 PDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGIL 331 (574)
Q Consensus 252 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 331 (574)
...|.++++|+.|.+..|.+.......|..+.+++.|+++.|+++....
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~------------------------------- 286 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE------------------------------- 286 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-------------------------------
Confidence 5556666666666666666655555555555566666555555544321
Q ss_pred ChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceE
Q 036593 332 PPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHL 411 (574)
Q Consensus 332 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 411 (574)
..+.+++.|+.|++++|.+..+-.++++.+++|++|+|+.|+++.
T Consensus 287 --------------------------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~--------- 331 (873)
T KOG4194|consen 287 --------------------------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR--------- 331 (873)
T ss_pred --------------------------ccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc---------
Confidence 223455666666666666666666666666666666666666652
Q ss_pred EccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceec---CCccccCCCCCCEEeCCCC
Q 036593 412 ELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDS---LPSNVQKLKVLRVLDLSRN 488 (574)
Q Consensus 412 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~l~~L~~L~l~~n 488 (574)
..+..|..+..|++|+|++|.+......+|..+++|++|+|++|.+.-. ....|..+++|+.|++.+|
T Consensus 332 ---------l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 332 ---------LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred ---------CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 2234455666677777777776655556666677777777777766433 3345667777777777777
Q ss_pred cccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCc
Q 036593 489 QLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNN 537 (574)
Q Consensus 489 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 537 (574)
++..+...+|.+++.|+.|+|.+|.|....+.+|..+ .|++|.+..-.
T Consensus 403 qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 403 QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence 7776666777777777777777777777777777777 77777665433
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-38 Score=298.78 Aligned_cols=367 Identities=26% Similarity=0.305 Sum_probs=278.6
Q ss_pred CCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcc
Q 036593 115 KLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALG 194 (574)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 194 (574)
.-++|++++|.+.++.+..|.++++|+.+.+..|.++ .+|.......+|+.|++.+|.|..+..+.++.++.|++|+++
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 3456777777777666666777777777777777776 566644445567777777777766666666666666666666
Q ss_pred CCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeec
Q 036593 195 TNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGH 274 (574)
Q Consensus 195 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 274 (574)
.|.+.......|..- .++++|++++|.++......|..+.+|..|.++.|.++..
T Consensus 158 rN~is~i~~~sfp~~-------------------------~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAK-------------------------VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred hchhhcccCCCCCCC-------------------------CCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 666654433333333 4455555555555555555666666777777777777666
Q ss_pred CCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccc
Q 036593 275 IPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGG 354 (574)
Q Consensus 275 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 354 (574)
.+..|.++++|+.|++..|.+...... .|.++++|+.|.+..|.+...
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~l--------tFqgL~Sl~nlklqrN~I~kL------------------------ 260 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGL--------TFQGLPSLQNLKLQRNDISKL------------------------ 260 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhh--------hhcCchhhhhhhhhhcCcccc------------------------
Confidence 666677777777777777776654322 266666666666666654422
Q ss_pred cCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCe
Q 036593 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRE 434 (574)
Q Consensus 355 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~ 434 (574)
-...|..+.++++|++..|+++......+.++.+|+.|+++.|.|.. .-+..+..+++|++
T Consensus 261 -~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r------------------ih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 261 -DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR------------------IHIDSWSFTQKLKE 321 (873)
T ss_pred -cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe------------------eecchhhhccccee
Confidence 22457788889999999999988878888899999999999998874 34466788999999
Q ss_pred EECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCccccc---CcccccCCCCCCEeeCCC
Q 036593 435 LRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGN---IPSTIGALVDLETLSLAS 511 (574)
Q Consensus 435 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~ 511 (574)
|+|+.|.++...+..|..+..|++|+|++|.+.......|..+++|++||+++|.+... ....|.++++|+.|.+.+
T Consensus 322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG 401 (873)
T ss_pred EeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence 99999999988899999999999999999999888888899999999999999998633 345788899999999999
Q ss_pred CcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccC
Q 036593 512 NQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQ 559 (574)
Q Consensus 512 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~ 559 (574)
|++....-.+|..++.|++|+|.+|.+-.+-+.+|..| .|++|-+..
T Consensus 402 Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 402 NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 99997777899999999999999999998999999999 999998764
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-38 Score=286.47 Aligned_cols=477 Identities=28% Similarity=0.402 Sum_probs=302.8
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEcc
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (574)
.+..++++.|.+. .+...+.++..+.+|++++|... ..|.+++.+..++.++.+.|++. .+|..+..+.+|+.++++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 3456777777776 34455777778888888888774 56777888888888888888877 777778888888888888
Q ss_pred CCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccC
Q 036593 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLI 202 (574)
Q Consensus 123 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 202 (574)
+|.+. ..++.++.+..++.++..+|.+. ..|.++..+.+|..+++.+|.+....++.+. ++.|+++++..|.+. .+
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cC
Confidence 88777 66777777888888888888776 6677777777777788777777654444444 777777777777665 56
Q ss_pred chhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCC
Q 036593 203 PPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL 282 (574)
Q Consensus 203 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 282 (574)
|..++.+.+|+.|++..|.+. .+| ++. .++.|+++.++.|.+.....+....++++..|++.+|+++ ..|..+.-+
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~-gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFP-GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCC-ccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence 666777777777777777776 666 333 6777777777777776444444557777777777777776 456666667
Q ss_pred CcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhcc-ccceEE-------ecccc---
Q 036593 283 RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSA-SLQSFY-------AYECK--- 351 (574)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~l~-------l~~~~--- 351 (574)
.+|.+|++++|.++.. +..++++ .|+.|.+.+|++..+-.+.+..... -++++. ++...
T Consensus 275 rsL~rLDlSNN~is~L---------p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 275 RSLERLDLSNNDISSL---------PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred hhhhhhcccCCccccC---------Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 7777777777777753 3346666 7777777777765433222211100 011110 00000
Q ss_pred cc-----ccCCccccCCCCCcEEECcCCCCcccCCcCcc--ccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCc
Q 036593 352 LG-----GSIPKEIGNLRGLILLTLDFNDLNGTIPTSVG--TLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPP 424 (574)
Q Consensus 352 ~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~ 424 (574)
.. ...........+.+.|+++.-+++......|. .-.-...++++.|++. .+|.
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-------------------elPk 405 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-------------------ELPK 405 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-------------------hhhh
Confidence 00 00001122334455555555555432222221 1112444455555444 4555
Q ss_pred cCcCCCCC-CeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCC
Q 036593 425 CLASLTSL-RELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVD 503 (574)
Q Consensus 425 ~~~~~~~L-~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 503 (574)
.+..+..+ +.+.+++|.+. ..+..+..+++|+.|++++|.+.+ +|..+.++-.|+.|+++.|.+. ..|.++-....
T Consensus 406 ~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~ 482 (565)
T KOG0472|consen 406 RLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT 482 (565)
T ss_pred hhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccc-cchHHHhhHHH
Confidence 44444333 33445555543 566666677777777777776643 4444556666777777777766 45666555566
Q ss_pred CCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccc
Q 036593 504 LETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563 (574)
Q Consensus 504 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~ 563 (574)
++.+-.++|++....+..+..+.+|+.||+.+|.+. .+|..+++|++|++|++++|+|.
T Consensus 483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 666666667777555566777777777777777776 56667777777777777777776
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.98 E-value=1.3e-36 Score=275.08 Aligned_cols=481 Identities=28% Similarity=0.370 Sum_probs=366.8
Q ss_pred CCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEE
Q 036593 40 RHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIM 119 (574)
Q Consensus 40 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 119 (574)
....+.+++++.+.+. ..|+++..+..++.++.++|++. ++|..+...+.|+.++++.|.+. ..++.++.+..|..+
T Consensus 66 nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDL 142 (565)
T ss_pred cccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhh
Confidence 3467899999999998 57778999999999999999985 78999999999999999999988 788889999999999
Q ss_pred EccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCccc
Q 036593 120 SLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLS 199 (574)
Q Consensus 120 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 199 (574)
+-.+|++. ..|.++.++.++..+++..+.+. ..|...-+|+.|++|+...|.+. ..|..++.+.+|.-|++..|++.
T Consensus 143 ~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 143 DATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc
Confidence 99999998 88999999999999999999998 55555666999999999998776 67888999999999999999997
Q ss_pred ccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCc
Q 036593 200 GLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTF 279 (574)
Q Consensus 200 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 279 (574)
.+| .|.+|..|+++++..|++. .+|.+..++++++..||+++|.++ ..|+.+..+.+|+.|++++|.++ ..|..+
T Consensus 220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sL 294 (565)
T KOG0472|consen 220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSL 294 (565)
T ss_pred -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccc
Confidence 556 6899999999999999988 899999999999999999999998 45666778889999999999998 567789
Q ss_pred cCCCcCceEEccCCcccccCCCCccccccccccCCCC-CcEEEccCCCCCCCCC-h---h-h--hhhccccceEEecccc
Q 036593 280 GNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRK-LSYLVLDSNPLGGILP-P---L-I--GNFSASLQSFYAYECK 351 (574)
Q Consensus 280 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~-~---~-~--~~~~~~L~~l~l~~~~ 351 (574)
+++ +|+.|.+.+|++.++..........+.+.-+.+ .+.=.++...-+.... . + + .....+.+.+.+++-.
T Consensus 295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 999 999999999998765432211100000000000 0000111111000000 0 0 0 0011255666777766
Q ss_pred ccccCCccccCC--CCCcEEECcCCCCcccCCcCccccCCCC-eEeccCCcccccCCCCCceEEccCCeeeecCCccCcC
Q 036593 352 LGGSIPKEIGNL--RGLILLTLDFNDLNGTIPTSVGTLQQLQ-GLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLAS 428 (574)
Q Consensus 352 ~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~ 428 (574)
++.+....|..- .-...++++.|.+. .+|..+..+..+. .+.+++|.+. .+|..+..
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-------------------fv~~~l~~ 433 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-------------------FVPLELSQ 433 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-------------------cchHHHHh
Confidence 664433333222 23678889988887 4455554444433 3445555554 56677788
Q ss_pred CCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEee
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLS 508 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 508 (574)
+++|+.|++++|-+. .+|..++.+..|+.|+++.|.+. ..|.+...+..++.+-.++|++....++.++++.+|..|+
T Consensus 434 l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD 511 (565)
T ss_pred hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence 899999999999876 78888888999999999999875 5677777778888888888999877777789999999999
Q ss_pred CCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEe
Q 036593 509 LASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFN 556 (574)
Q Consensus 509 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~ 556 (574)
+.+|.+. .+|..++++++|++|+++||+|. ..+..+-..+....+.
T Consensus 512 L~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ 557 (565)
T KOG0472|consen 512 LQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILS 557 (565)
T ss_pred cCCCchh-hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHH
Confidence 9999998 78889999999999999999998 4344443334444333
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=5.1e-33 Score=277.11 Aligned_cols=480 Identities=29% Similarity=0.346 Sum_probs=334.5
Q ss_pred EEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccC
Q 036593 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRN 123 (574)
Q Consensus 44 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 123 (574)
+..|+++.|.+.....+.+.++-+|++|++++|.+ +.+|..+..+++|+.|.++.|.+. ..|....++.+|+++.|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence 55566666655443344455566677777777766 356666777777777777777766 5566677777777777777
Q ss_pred CcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCc
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIP 203 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 203 (574)
|.+. ..|..+..+.+|+.|+++.|.+. ..|..+..++.+..+..++|... ..++... ++.+++..+.+....+
T Consensus 101 n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~~-ik~~~l~~n~l~~~~~ 173 (1081)
T KOG0618|consen 101 NRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI----QRLGQTS-IKKLDLRLNVLGGSFL 173 (1081)
T ss_pred chhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh----hhhcccc-chhhhhhhhhcccchh
Confidence 7665 67777777777777777777765 56666777777777777776111 1122222 6666776666665555
Q ss_pred hhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCC
Q 036593 204 PAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLR 283 (574)
Q Consensus 204 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 283 (574)
.....+++ .|++++|.+. ... ...+++|+.+....+++.... -..++++.|+.+.|.+...... ....
T Consensus 174 ~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~ 241 (1081)
T KOG0618|consen 174 IDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPL 241 (1081)
T ss_pred cchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccc
Confidence 55555555 5778777765 211 115667777776666654321 1345788888888877633221 2245
Q ss_pred cCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCC
Q 036593 284 HLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNL 363 (574)
Q Consensus 284 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l 363 (574)
+|++++++.+.++.. +..+..|.+|+.++..+|.++......+.. . +++.+.+..|++. -+|.....+
T Consensus 242 nl~~~dis~n~l~~l---------p~wi~~~~nle~l~~n~N~l~~lp~ri~~~-~-~L~~l~~~~nel~-yip~~le~~ 309 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNL---------PEWIGACANLEALNANHNRLVALPLRISRI-T-SLVSLSAAYNELE-YIPPFLEGL 309 (1081)
T ss_pred cceeeecchhhhhcc---------hHHHHhcccceEecccchhHHhhHHHHhhh-h-hHHHHHhhhhhhh-hCCCccccc
Confidence 788888888887764 345788888999998888885443332222 2 6777777777776 355556778
Q ss_pred CCCcEEECcCCCCcccCCcCccccCC-CCeEeccCCccccc------CCCCCceEEccCCeeeecCCccCcCCCCCCeEE
Q 036593 364 RGLILLTLDFNDLNGTIPTSVGTLQQ-LQGLSLEDNNLEGS------IPYDLCHLELNGNKLSGHIPPCLASLTSLRELR 436 (574)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~------~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~ 436 (574)
+.|++|++..|++.......+..... +..++.+.+++... ....++.|++.+|.++...-..+.++++|++|+
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 88999999988887544433333332 56666666665432 223577899999999987777788999999999
Q ss_pred CCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccc
Q 036593 437 LGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 437 l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
|++|++.......+.+++.|++|+|+||.+. .+|..+..++.|++|...+|++. ..| .+..++.|+.++++.|+++.
T Consensus 390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 390 LSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred ecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 9999998666678889999999999999996 45678889999999999999998 566 67889999999999999886
Q ss_pred c-CCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCC
Q 036593 517 P-IPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQN 560 (574)
Q Consensus 517 ~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n 560 (574)
. ++...+. ++|+.||++||.-.......|..+.++...++.-+
T Consensus 467 ~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 467 VTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 3 3444443 89999999999876666667777777777777665
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.7e-32 Score=261.80 Aligned_cols=366 Identities=26% Similarity=0.401 Sum_probs=181.3
Q ss_pred CCCcEEEccCCccc-ccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceee
Q 036593 66 SFLMSLDVTLNNFY-GHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQ 144 (574)
Q Consensus 66 ~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 144 (574)
+-+|-+|+++|.+. +.+|.....+..++.|.|...++. .+|+.++.+.+|++|.+.+|++. .+-..++.++.||.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 34455566666655 345556666666666666555554 45555555666666666555554 3334455555555555
Q ss_pred cccccCc-ccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCccc
Q 036593 145 ASFNVID-GNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFS 223 (574)
Q Consensus 145 l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (574)
+.+|++. .-+|..+.++..|+.|++++|++. ..|..+...+++-.|++++|++.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------------------------EvP~~LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------------------------EVPTNLEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-------------------------hcchhhhhhcCcEEEEcccCccc
Confidence 5555442 123333444444555555444443 23333444444444444444444
Q ss_pred ccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCc
Q 036593 224 GRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSAD 303 (574)
Q Consensus 224 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 303 (574)
.+|..++.++..|-.|+++.|.+. ..|..+..+..|++|.+++|++...-...+..+..|+.|.+++.+-+-.
T Consensus 140 -tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~----- 212 (1255)
T KOG0444|consen 140 -TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD----- 212 (1255)
T ss_pred -cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh-----
Confidence 444444444444444555544443 2333444555555555555555433233334444444555544433221
Q ss_pred cccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcC
Q 036593 304 QWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTS 383 (574)
Q Consensus 304 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 383 (574)
.++.++..+.+|..++++.|.+. .+|..+..+++|+.|++++|.++.
T Consensus 213 --N~Ptsld~l~NL~dvDlS~N~Lp--------------------------~vPecly~l~~LrrLNLS~N~ite----- 259 (1255)
T KOG0444|consen 213 --NIPTSLDDLHNLRDVDLSENNLP--------------------------IVPECLYKLRNLRRLNLSGNKITE----- 259 (1255)
T ss_pred --cCCCchhhhhhhhhccccccCCC--------------------------cchHHHhhhhhhheeccCcCceee-----
Confidence 12233444444444444444433 233344444555555555555442
Q ss_pred ccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCC
Q 036593 384 VGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463 (574)
Q Consensus 384 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 463 (574)
+........+|+.|+++.|+++ .+|.++..++.|+.|.+.+
T Consensus 260 --------------------------------------L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 260 --------------------------------------LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred --------------------------------------eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhcc
Confidence 2222233344555555555554 4455555555555555555
Q ss_pred Ccceec-CCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 464 NSLNDS-LPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 464 ~~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
|.+.-. +|..++.+.+|+++..++|.+. ..|..+..|+.|+.|.|+.|++. ++|+++.-++.|+.||++.|+-.
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 554322 4455555555555555555555 45555555556666666655555 55555555555666666555443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.8e-31 Score=252.72 Aligned_cols=387 Identities=26% Similarity=0.394 Sum_probs=288.5
Q ss_pred CCcEEEEEcCCCCCc-cccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEE
Q 036593 41 HQRVKALNLSGMGLG-GTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIM 119 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 119 (574)
.+-+|-+|+++|.++ +..|..+..++.++-|.|....+. .+|..++.+.+|++|++++|++. .+-..++.++.||.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 467899999999998 468888999999999999988874 78999999999999999999988 444568899999999
Q ss_pred EccCCcccc-cCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcc
Q 036593 120 SLRNNNITG-PIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNL 198 (574)
Q Consensus 120 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 198 (574)
.++.|++.. .+|..+..+..|..|++++|.+. ..|..+..-+++-+|++++|+|..+....|.+++.|-.|++++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 999998763 57888999999999999999998 7899999999999999999999877777788899999999999988
Q ss_pred cccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCcee-ecCCC
Q 036593 199 SGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFS-GHIPN 277 (574)
Q Consensus 199 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~ 277 (574)
. .+|..+..+.+|+.|++++|++. .+ -...+..++.|+.|.+++.+-+ ...|.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~-hf------------------------QLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLN-HF------------------------QLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhh-HH------------------------HHhcCccchhhhhhhcccccchhhcCCC
Confidence 6 56666788888888888888654 11 1111222333344444433211 23445
Q ss_pred CccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCC
Q 036593 278 TFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIP 357 (574)
Q Consensus 278 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 357 (574)
.+..+.+|..++++.|.+.. +++.+-.+++|+.|++++|.+++..
T Consensus 217 sld~l~NL~dvDlS~N~Lp~---------vPecly~l~~LrrLNLS~N~iteL~-------------------------- 261 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLPI---------VPECLYKLRNLRRLNLSGNKITELN-------------------------- 261 (1255)
T ss_pred chhhhhhhhhccccccCCCc---------chHHHhhhhhhheeccCcCceeeee--------------------------
Confidence 55555566666666555543 2333555556666666666555321
Q ss_pred ccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEEC
Q 036593 358 KEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRL 437 (574)
Q Consensus 358 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l 437 (574)
.......+|++|+++.|.++ .+|+++..+++|+.|++.+|+++-. .+|..++.+.+|+++..
T Consensus 262 ~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~Fe-----------------GiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 262 MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFE-----------------GIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccccc-----------------CCccchhhhhhhHHHHh
Confidence 11233467889999999988 7788888999999999998887743 56777888888999988
Q ss_pred CCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCC
Q 036593 438 GSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLAS 511 (574)
Q Consensus 438 ~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 511 (574)
.+|.+. ..|..+..|..|+.|.|++|.+. .+|+++.-++.|++||+..|.-.--.|..-..-++|+.-+|..
T Consensus 324 anN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 324 ANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred hccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecce
Confidence 888885 78888888888888888888875 4677777788888888887764423333222235566555543
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=1.3e-31 Score=267.21 Aligned_cols=478 Identities=31% Similarity=0.367 Sum_probs=376.2
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCc
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNN 125 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 125 (574)
++|++...+. .+|..+-....+..|++++|.+...-...++++.+|+.|++++|.+. ..|..+..+.+|+.|+++.|.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence 3566777766 56666666666999999988775432445677778999999999887 788889999999999999998
Q ss_pred ccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchh
Q 036593 126 ITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPA 205 (574)
Q Consensus 126 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 205 (574)
+. ..|....++.+|+++.|..+... .+|..+..+++|++|+++.|.+. ..|..+..+..++.+..++|.-...
T Consensus 80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~---- 152 (1081)
T KOG0618|consen 80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR---- 152 (1081)
T ss_pred Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----
Confidence 87 77788889999999999999887 78999999999999999999876 5777888888888898988822212
Q ss_pred hcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcC
Q 036593 206 IFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHL 285 (574)
Q Consensus 206 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 285 (574)
++... ++++++..+.+.+.++.+.. .+.+ .+++++|.+. ...+..+++|+.+....|.+.... ...+++
T Consensus 153 lg~~~-ik~~~l~~n~l~~~~~~~i~-~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l 221 (1081)
T KOG0618|consen 153 LGQTS-IKKLDLRLNVLGGSFLIDIY-NLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSL 221 (1081)
T ss_pred hcccc-chhhhhhhhhcccchhcchh-hhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcch
Confidence 22222 78888888887777666554 3333 5999998876 234567788999998888876432 245789
Q ss_pred ceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCC
Q 036593 286 NVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRG 365 (574)
Q Consensus 286 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~ 365 (574)
+.|+.+.|.+..... -.-..+|++++++++++.... ++++.+. +++.+....+.+. .+|..+....+
T Consensus 222 ~~L~a~~n~l~~~~~----------~p~p~nl~~~dis~n~l~~lp-~wi~~~~-nle~l~~n~N~l~-~lp~ri~~~~~ 288 (1081)
T KOG0618|consen 222 TALYADHNPLTTLDV----------HPVPLNLQYLDISHNNLSNLP-EWIGACA-NLEALNANHNRLV-ALPLRISRITS 288 (1081)
T ss_pred heeeeccCcceeecc----------ccccccceeeecchhhhhcch-HHHHhcc-cceEecccchhHH-hhHHHHhhhhh
Confidence 999999998874321 223468999999999998776 8888877 9999999999995 67777788899
Q ss_pred CcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCC-------CCCceEEccCCeeeecCCccCcCCCCCCeEECC
Q 036593 366 LILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP-------YDLCHLELNGNKLSGHIPPCLASLTSLRELRLG 438 (574)
Q Consensus 366 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~ 438 (574)
|+.+.+..|++. -.+....++.+|++|++..|++....+ ..+..++.+.+.+.......=...+.|+.|.+.
T Consensus 289 L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 289 LVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 999999999987 445566779999999999999874222 123344555555542211112346789999999
Q ss_pred CCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccC
Q 036593 439 SNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI 518 (574)
Q Consensus 439 ~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 518 (574)
+|.++......+.+..+|+.|+|++|++.......+.++..|+.|++++|.++ .++..+..++.|++|...+|++. ..
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~f 445 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SF 445 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ec
Confidence 99999777778889999999999999998777778899999999999999999 56788999999999999999999 67
Q ss_pred CccccCCcCCCeeeCCCCcccccC-CcCcccCCCCCeEeccCCc
Q 036593 519 PESVGSLISLESLDLSGNNFSGKI-PKSLEALSHLKQFNVSQNM 561 (574)
Q Consensus 519 ~~~l~~~~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~l~l~~n~ 561 (574)
| .+..+++|+.+|++.|.+.... ++.... |+|+.||+++|.
T Consensus 446 P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 446 P-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred h-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 7 7788899999999999998643 333333 899999999996
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.9e-23 Score=232.88 Aligned_cols=321 Identities=20% Similarity=0.308 Sum_probs=172.0
Q ss_pred CCccccCCC-CCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccC
Q 036593 106 IPTWIGVLS-KLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGN 184 (574)
Q Consensus 106 ~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 184 (574)
.|..+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.++.+. .++.++..+++|++|+++++......+ .++.
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~ 655 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSM 655 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-cccc
Confidence 344444443 4666666665554 444444 3456666666666554 455555666666666666553322233 3555
Q ss_pred CCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEE
Q 036593 185 LQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGL 264 (574)
Q Consensus 185 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 264 (574)
+++|++|++.+|......|..+..+++|+.|++++|.....+|... .+++|+.|++++|......+. ...+|+.|
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L 730 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPD---ISTNISWL 730 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCcccccc---ccCCcCee
Confidence 6666666666665555566666667777777777665444555543 466677777666643322222 13457777
Q ss_pred eCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccce
Q 036593 265 DLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQS 344 (574)
Q Consensus 265 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 344 (574)
+++++.+. ..|..+ .+++|++|.+..+...... ..+..+. ......+++|+.
T Consensus 731 ~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~---------~~~~~l~-----------------~~~~~~~~sL~~ 782 (1153)
T PLN03210 731 DLDETAIE-EFPSNL-RLENLDELILCEMKSEKLW---------ERVQPLT-----------------PLMTMLSPSLTR 782 (1153)
T ss_pred ecCCCccc-cccccc-cccccccccccccchhhcc---------ccccccc-----------------hhhhhccccchh
Confidence 77777665 334333 4566666666553321110 0000000 000111234555
Q ss_pred EEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCC---CCCceEEccCCeeeec
Q 036593 345 FYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP---YDLCHLELNGNKLSGH 421 (574)
Q Consensus 345 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~l~~~~l~~~ 421 (574)
|.+++|.....+|..+.++++|+.|++++|...+.++... .+++|++|++++|.....+| .+++.|++++|.++ .
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~ 860 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-E 860 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-c
Confidence 5555555555566667777777777777765433444433 56777777777765433222 34445555555544 4
Q ss_pred CCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCc
Q 036593 422 IPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNS 465 (574)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~ 465 (574)
+|..+..+++|+.|++++|.-...++.....+++|+.+++++|.
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 45555556666666666654333444445555566666665553
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.5e-22 Score=222.76 Aligned_cols=320 Identities=21% Similarity=0.271 Sum_probs=211.1
Q ss_pred cCCcCCCCCC-CCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhc
Q 036593 129 PIPNSLFNLS-KLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF 207 (574)
Q Consensus 129 ~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 207 (574)
..|..+..++ +|+.|.+..+.+. .+|..+ ...+|++|++.++.+. ..+..+..+++|+.++++++......| .+.
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls 654 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLS 654 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccc
Confidence 3455566654 6999999998886 677766 5789999999999887 456678889999999999876544555 477
Q ss_pred ccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCce
Q 036593 208 NISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNV 287 (574)
Q Consensus 208 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 287 (574)
.+++|+.|++++|.....+|..+. .+++|+.|++++|......+..+ .+++|+.|++++|......|.. ..+|+.
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~ 729 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISW 729 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCe
Confidence 899999999999876557776655 67777777777664333333322 4455555555555322222211 223444
Q ss_pred EEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCc
Q 036593 288 LSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLI 367 (574)
Q Consensus 288 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 367 (574)
|+++++.+... |..+ .+++|+
T Consensus 730 L~L~~n~i~~l----------------------------------------------------------P~~~-~l~~L~ 750 (1153)
T PLN03210 730 LDLDETAIEEF----------------------------------------------------------PSNL-RLENLD 750 (1153)
T ss_pred eecCCCccccc----------------------------------------------------------cccc-cccccc
Confidence 44444333221 1111 223333
Q ss_pred EEECcCCCCcc-------cCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCC
Q 036593 368 LLTLDFNDLNG-------TIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSN 440 (574)
Q Consensus 368 ~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 440 (574)
+|.+..+.... ..+..+...++|++|++++|... ..+|..+..+++|+.|++++|
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l------------------~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL------------------VELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCc------------------cccChhhhCCCCCCEEECCCC
Confidence 33333321110 00111122345555655555433 256677888999999999998
Q ss_pred eecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCc
Q 036593 441 KLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPE 520 (574)
Q Consensus 441 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 520 (574)
...+.+|... .+++|++|++++|.....+|.. .++|+.|++++|.+. ..|..+..+++|+.|++++|.-...++.
T Consensus 813 ~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 813 INLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 6554566555 6889999999998655444432 368999999999988 5677888899999999999865556777
Q ss_pred cccCCcCCCeeeCCCCccc
Q 036593 521 SVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 521 ~l~~~~~L~~L~l~~n~~~ 539 (574)
.+..+++|+.+++++|.-.
T Consensus 888 ~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 888 NISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ccccccCCCeeecCCCccc
Confidence 7888899999999999643
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=6.1e-25 Score=199.46 Aligned_cols=274 Identities=23% Similarity=0.239 Sum_probs=175.9
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccC-
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRN- 123 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~- 123 (574)
-.++.++.+++ .+|..+. +.-.++.|..|.|...-+.+|+.+++||.|||+.|.|+.+.|++|..+++|..|.+.+
T Consensus 49 ~~VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 49 GIVDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred ceEEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 34555666665 3444343 2555666666666655555666666666666666666666666666666666665555
Q ss_pred CcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcc-----
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNL----- 198 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----- 198 (574)
|+|.+.....|.++..++.|.+.-+.+.....++|..+++|..|.+.+|.+..+....|..+..++++.+..|++
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 556644444566666666666666666655566666666666666666666544444566666666666555541
Q ss_pred -------------------------------cccCchhhccc-CCCcEEEcccCcccccCCchhhcCCCCcCeeeccccc
Q 036593 199 -------------------------------SGLIPPAIFNI-STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINN 246 (574)
Q Consensus 199 -------------------------------~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 246 (574)
....+..|... ..+..--.+.+......|...++.+++|++|++++|.
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 11111111100 1111111122333346676667788889999999888
Q ss_pred ceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCC
Q 036593 247 LIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNP 326 (574)
Q Consensus 247 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 326 (574)
++.+...+|.+..++++|.+.+|++.......|.++..|+.|++.+|+|+....+. |..+.+|.+|.+-.|+
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a--------F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA--------FQTLFSLSTLNLLSNP 357 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc--------ccccceeeeeehccCc
Confidence 88888888888888999999888887777777888888888998888888875444 7778888888888777
Q ss_pred CCC
Q 036593 327 LGG 329 (574)
Q Consensus 327 ~~~ 329 (574)
+-.
T Consensus 358 ~~C 360 (498)
T KOG4237|consen 358 FNC 360 (498)
T ss_pred ccC
Confidence 653
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=1.5e-24 Score=196.92 Aligned_cols=416 Identities=22% Similarity=0.199 Sum_probs=257.4
Q ss_pred CCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeeccc-ccCcccCchhccCCCCCCEEE
Q 036593 90 GRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASF-NVIDGNIPSGIGNLSNLFDLD 168 (574)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 168 (574)
+.-..++|..|.|+.+.+.+|+.+++||.|||++|.|+.+.|++|..+.++-.|.+.+ |.|+......|+++..|+-|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4567899999999999999999999999999999999999999999999998887766 888855556789999999999
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccc------------cCCchhhcCCCC
Q 036593 169 LRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG------------RLPSTIGHSLPN 236 (574)
Q Consensus 169 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------------~~~~~~~~~l~~ 236 (574)
+.-|.+.-...++|..+++|..|.+.+|.+...--..|..+..++.+.+..+.... ..+.++. ....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets-garc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS-GARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc-ccee
Confidence 99999998888999999999999999999886666688889999999888776221 1111111 1222
Q ss_pred cCeeecccccceecCCcCccCC-CCccEEeCCCC-ceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCC
Q 036593 237 IEYLTLAINNLIGTIPDSLTNA-SKLIGLDLGSN-SFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNC 314 (574)
Q Consensus 237 L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 314 (574)
.....+.+..+.......|... ..+.+--.+.+ .........|..+++|+++++++|.++.+.... |.+.
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a--------Fe~~ 297 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA--------FEGA 297 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh--------hcch
Confidence 2222232222222222222211 11111111222 222223345788899999999999988876554 7788
Q ss_pred CCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEe
Q 036593 315 RKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLS 394 (574)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 394 (574)
..+++|.+..|.+..+... .|..+..|+.|++++|+++...+.+|....+|.+|+
T Consensus 298 a~l~eL~L~~N~l~~v~~~-------------------------~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSG-------------------------MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred hhhhhhhcCcchHHHHHHH-------------------------hhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence 8888888888876644322 345666677777777777766677777777777777
Q ss_pred ccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccc
Q 036593 395 LEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV 474 (574)
Q Consensus 395 l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 474 (574)
+-.|.+-..---.+-.=.+...... ..| -.+..-.++.+.+++..+...-.. .=++... . ..+.+.
T Consensus 353 l~~Np~~CnC~l~wl~~Wlr~~~~~-~~~-~Cq~p~~~~~~~~~dv~~~~~~c~------~~ee~~~---~---~s~~cP 418 (498)
T KOG4237|consen 353 LLSNPFNCNCRLAWLGEWLRKKSVV-GNP-RCQSPGFVRQIPISDVAFGDFRCG------GPEELGC---L---TSSPCP 418 (498)
T ss_pred hccCcccCccchHHHHHHHhhCCCC-CCC-CCCCCchhccccchhccccccccC------CccccCC---C---CCCCCC
Confidence 7666543110000000000111101 011 112223456666666654321111 0001110 0 011122
Q ss_pred cCCCCCCEE-eCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCC
Q 036593 475 QKLKVLRVL-DLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLK 553 (574)
Q Consensus 475 ~~l~~L~~L-~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 553 (574)
..++-+.++ ..++..+. .+|..+ ...-.+|++.+|.++ .+|.. .+.+| .+++++|++....-..|.+|+.|.
T Consensus 419 ~~c~c~~tVvRcSnk~lk-~lp~~i--P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~ 491 (498)
T KOG4237|consen 419 PPCTCLDTVVRCSNKLLK-LLPRGI--PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLS 491 (498)
T ss_pred CCcchhhhhHhhcccchh-hcCCCC--CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhh
Confidence 334444332 33333333 333322 235677888888887 45544 55667 788888888755555678888888
Q ss_pred eEeccCC
Q 036593 554 QFNVSQN 560 (574)
Q Consensus 554 ~l~l~~n 560 (574)
++-+++|
T Consensus 492 tlilsyn 498 (498)
T KOG4237|consen 492 TLILSYN 498 (498)
T ss_pred eeEEecC
Confidence 8877765
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4.6e-19 Score=183.48 Aligned_cols=259 Identities=27% Similarity=0.363 Sum_probs=145.4
Q ss_pred cCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCC
Q 036593 237 IEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRK 316 (574)
Q Consensus 237 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (574)
-..|+++.+.+.. .|..+. ++|+.|.+.+|.++. .|. ..++|++|++++|.++..+. ..++
T Consensus 203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~------------lp~s 263 (788)
T PRK15387 203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV------------LPPG 263 (788)
T ss_pred CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC------------cccc
Confidence 4456666665552 333332 356666666666653 232 23566666666666654321 1245
Q ss_pred CcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEecc
Q 036593 317 LSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLE 396 (574)
Q Consensus 317 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 396 (574)
|+.|++++|.+.... ..+ ++|+.|++++|.++... . ..++|+.|+++
T Consensus 264 L~~L~Ls~N~L~~Lp-----~lp------------------------~~L~~L~Ls~N~Lt~LP-~---~p~~L~~LdLS 310 (788)
T PRK15387 264 LLELSIFSNPLTHLP-----ALP------------------------SGLCKLWIFGNQLTSLP-V---LPPGLQELSVS 310 (788)
T ss_pred cceeeccCCchhhhh-----hch------------------------hhcCEEECcCCcccccc-c---cccccceeECC
Confidence 566666665554321 112 33444555555444221 1 12445555555
Q ss_pred CCcccc--cCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccc
Q 036593 397 DNNLEG--SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV 474 (574)
Q Consensus 397 ~~~~~~--~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 474 (574)
+|++++ ..|..++.|++++|.++ .+|. ...+|++|++++|++++ +|.. ..+|+.|++++|.+.. +|..
T Consensus 311 ~N~L~~Lp~lp~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l- 380 (788)
T PRK15387 311 DNQLASLPALPSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL- 380 (788)
T ss_pred CCccccCCCCcccccccccccCccc-cccc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc-
Confidence 555443 23344555555555554 2332 12467777777777763 3332 3467777777777764 3322
Q ss_pred cCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCe
Q 036593 475 QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQ 554 (574)
Q Consensus 475 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 554 (574)
..+|+.|++++|++.. ++.. .++|+.|++++|++. .+|..+ .+|+.|++++|+++ .+|..+..+++|+.
T Consensus 381 --~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~ 449 (788)
T PRK15387 381 --PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETT 449 (788)
T ss_pred --ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCe
Confidence 2467777777777763 3322 256777788887776 344432 35677777777777 56777777777888
Q ss_pred EeccCCccccccCC
Q 036593 555 FNVSQNMLEGEIPV 568 (574)
Q Consensus 555 l~l~~n~~~~~~p~ 568 (574)
|++++|++++..|.
T Consensus 450 LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 450 VNLEGNPLSERTLQ 463 (788)
T ss_pred EECCCCCCCchHHH
Confidence 88888877776554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=7.8e-18 Score=174.47 Aligned_cols=222 Identities=30% Similarity=0.331 Sum_probs=104.7
Q ss_pred CCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhh
Q 036593 259 SKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF 338 (574)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 338 (574)
++|++|++++|.++. .|. ..++|+.|+++.|.+...+. ..++|+.|++++|.++.... .
T Consensus 242 ~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls~N~L~~Lp~------------lp~~L~~L~Ls~N~Lt~LP~-----~ 300 (788)
T PRK15387 242 PELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA------------LPSGLCKLWIFGNQLTSLPV-----L 300 (788)
T ss_pred CCCcEEEecCCccCc-ccC---cccccceeeccCCchhhhhh------------chhhcCEEECcCCccccccc-----c
Confidence 445555555555442 221 12355555555555443210 11345555555555443211 1
Q ss_pred ccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCee
Q 036593 339 SASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKL 418 (574)
Q Consensus 339 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l 418 (574)
+++|+.|++++|.+.. +|.. ..+|+.|++++|.++.. +. -.++|++|++++|+++.
T Consensus 301 p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~L-P~---lp~~Lq~LdLS~N~Ls~---------------- 356 (788)
T PRK15387 301 PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSL-PT---LPSGLQELSVSDNQLAS---------------- 356 (788)
T ss_pred ccccceeECCCCcccc-CCCC---cccccccccccCccccc-cc---cccccceEecCCCccCC----------------
Confidence 1234444444444432 2221 13456666666666532 21 11356667776666663
Q ss_pred eecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccc
Q 036593 419 SGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTI 498 (574)
Q Consensus 419 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 498 (574)
+|.. .++|+.|++++|++.. ++.. ..+|+.|++++|.+.. +|.. .++|+.|++++|.+.. +|..
T Consensus 357 ---LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l- 420 (788)
T PRK15387 357 ---LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML- 420 (788)
T ss_pred ---CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc-
Confidence 2221 2345555555555542 2221 2345555666555543 2211 2455666666665552 2321
Q ss_pred cCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCc
Q 036593 499 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPK 544 (574)
Q Consensus 499 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 544 (574)
..+|+.|++++|+++ .+|..+..+++|+.|++++|++....+.
T Consensus 421 --~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 421 --PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred --hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 234555666666665 4555555566666666666666544333
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.6e-19 Score=175.76 Aligned_cols=285 Identities=26% Similarity=0.303 Sum_probs=160.2
Q ss_pred eeccccccee-cCCcCccCCCCccEEeCCCCceeec----CCCCccCCCcCceEEccCCcccccCCCCccccccccccCC
Q 036593 240 LTLAINNLIG-TIPDSLTNASKLIGLDLGSNSFSGH----IPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNC 314 (574)
Q Consensus 240 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 314 (574)
|++..+.+.. .....+..+..|+.++++++.++.. .+..+...+.+++++++.+.+.... .........+..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~--~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIP--RGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcc--hHHHHHHHHHHhc
Confidence 3444444431 2223344555677777777766322 2233445566677776666544200 0011122334556
Q ss_pred CCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCccc----CCcCcccc-CC
Q 036593 315 RKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGT----IPTSVGTL-QQ 389 (574)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~-~~ 389 (574)
++|+.|+++++.+....+..+.... .. ++|++|++++|.+.+. ....+..+ ++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~---------------------~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~ 138 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLL---------------------RS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHh---------------------cc-CcccEEEeeCCccchHHHHHHHHHHHhCCCC
Confidence 6666666666665543322222211 12 3466666666655421 12223344 56
Q ss_pred CCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeeccc----CCccccCCCCCCeEeCCCCc
Q 036593 390 LQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS----IPSSLWSLEYILEINLSSNS 465 (574)
Q Consensus 390 L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~~~ 465 (574)
|++|++++|.+++..+. .+...+..+++|++|++++|.+.+. .+..+..+++|++|++++|.
T Consensus 139 L~~L~L~~n~l~~~~~~--------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 139 LEKLVLGRNRLEGASCE--------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred ceEEEcCCCcCCchHHH--------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 66666666665531110 2233455667788888888877632 22334455688888888887
Q ss_pred ceec----CCccccCCCCCCEEeCCCCcccccCccccc-----CCCCCCEeeCCCCcccc----cCCccccCCcCCCeee
Q 036593 466 LNDS----LPSNVQKLKVLRVLDLSRNQLSGNIPSTIG-----ALVDLETLSLASNQFQG----PIPESVGSLISLESLD 532 (574)
Q Consensus 466 l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~ 532 (574)
+.+. ....+..+++|++|++++|.+.+.....+. ..+.|+.|++++|.+++ .....+..+++|+.++
T Consensus 205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 7533 233456778888888888887643222222 23788889998888862 2334566668888899
Q ss_pred CCCCccccc----CCcCcccC-CCCCeEeccCCcc
Q 036593 533 LSGNNFSGK----IPKSLEAL-SHLKQFNVSQNML 562 (574)
Q Consensus 533 l~~n~~~~~----~~~~l~~l-~~L~~l~l~~n~~ 562 (574)
+++|.+... ....+... +.|+++++.+|++
T Consensus 285 l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 285 LRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999888853 22233334 6788888888864
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=1.2e-16 Score=166.74 Aligned_cols=180 Identities=27% Similarity=0.441 Sum_probs=96.1
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCccccc---CCCCCceEEccCCe
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGS---IPYDLCHLELNGNK 417 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~l~l~~~~ 417 (574)
.++.|++++|.+. .+|..+. .+|+.|++++|.+.. ++..+ .++|+.|++++|+++.. +|..+..|++++|.
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~ 315 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNS 315 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCc
Confidence 3444444444443 2333222 356666666666553 23222 13566666666665531 22344455555555
Q ss_pred eeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCccc
Q 036593 418 LSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPST 497 (574)
Q Consensus 418 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 497 (574)
++ .+|..+ .++|+.|++++|.++. ++..+ +++|+.|++++|.+.. +|..+. ++|++|++++|.+.. +|..
T Consensus 316 Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt~-LP~~ 385 (754)
T PRK15370 316 LT-ALPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALTN-LPEN 385 (754)
T ss_pred cc-cCCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCCC-CCHh
Confidence 54 233322 2567777777777653 44433 2567777777777653 343332 567777777777663 3333
Q ss_pred ccCCCCCCEeeCCCCcccccCCccccC----CcCCCeeeCCCCccc
Q 036593 498 IGALVDLETLSLASNQFQGPIPESVGS----LISLESLDLSGNNFS 539 (574)
Q Consensus 498 ~~~~~~L~~L~l~~n~~~~~~~~~l~~----~~~L~~L~l~~n~~~ 539 (574)
+. ++|+.|++++|++. .+|..+.+ ++.+..|++.+|++.
T Consensus 386 l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 386 LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 32 35777777777766 44443333 356667777777765
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=1.3e-18 Score=169.39 Aligned_cols=177 Identities=23% Similarity=0.255 Sum_probs=86.1
Q ss_pred EEcCCCCCc-cccCCCccCCCCCcEEEccCCcccc----cCchhhcCCCCCCEEEccCCcCcc------CCCccccCCCC
Q 036593 47 LNLSGMGLG-GTIPPHLGNLSFLMSLDVTLNNFYG----HLPNELGKLGRLKFISFSFNKLSG------SIPTWIGVLSK 115 (574)
Q Consensus 47 l~l~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~ 115 (574)
|++.++.++ +.....+..+.+|++|+++++.+.. .++..+...+.|+.++++++.+.. ..+..+.++++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 445555554 2334444555567777777666532 234445556666677666665441 12234555666
Q ss_pred CCEEEccCCcccccCCcCCCCC---CCCceeecccccCcc----cCchhccCC-CCCCEEEccCCcCCcC----CCcccc
Q 036593 116 LQIMSLRNNNITGPIPNSLFNL---SKLEMLQASFNVIDG----NIPSGIGNL-SNLFDLDLRHNNLQDQ----IPTEIG 183 (574)
Q Consensus 116 L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~----~~~~~l~~l-~~L~~L~l~~~~~~~~----~~~~l~ 183 (574)
|+.|++++|.+....+..+..+ ++|++|++++|.+.+ .+...+..+ ++|++|++++|.++.. ....+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 6666666665543333333222 236666666555441 112233444 5556666665555421 122334
Q ss_pred CCCCCCEEEccCCccccc----CchhhcccCCCcEEEcccCccc
Q 036593 184 NLQNLESLALGTNNLSGL----IPPAIFNISTIRVLNLHSNQFS 223 (574)
Q Consensus 184 ~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~ 223 (574)
.+++|++|++++|.+.+. .+..+..+++|++|++++|.+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 445555555555554421 1122233345555555555443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=2.1e-16 Score=165.09 Aligned_cols=125 Identities=21% Similarity=0.380 Sum_probs=75.2
Q ss_pred CCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcc----cccCCCCCC
Q 036593 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPS----TIGALVDLE 505 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~ 505 (574)
++|+.|++++|++. .+|..+ .++|++|++++|.+.. +|..+. .+|+.|++++|++. .+|. .+..++++.
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT 418 (754)
T ss_pred CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence 68888888888876 445444 3678888888888864 343333 36888888888887 3343 334457888
Q ss_pred EeeCCCCcccccCCccccCCcCCCeeeCCCCcc-cccCCcCcccCCCCCeEeccCCccccccCC
Q 036593 506 TLSLASNQFQGPIPESVGSLISLESLDLSGNNF-SGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 506 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~-~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
.|++.+|++.. ..+ .+|+.+ ++.+.+ +..++......+.++....-++.+.+++|.
T Consensus 419 ~L~L~~Npls~---~tl---~~L~~L-l~s~~~~gp~i~~~~~~~~~l~~~~~l~~a~~~Wl~~ 475 (754)
T PRK15370 419 RIIVEYNPFSE---RTI---QNMQRL-MSSVGYQGPRVLFAMGDFSIVRVTRPLHQAVQGWLTN 475 (754)
T ss_pred EEEeeCCCccH---HHH---HHHHHh-hhcccccCCcccccccccccccccchHHHHHhccCCc
Confidence 99999998873 233 333333 222222 112222333344555544455566666665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.9e-17 Score=132.48 Aligned_cols=163 Identities=27% Similarity=0.512 Sum_probs=114.9
Q ss_pred ccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCc
Q 036593 62 LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLE 141 (574)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 141 (574)
+.++.+++.|.|++|.++ .+|..+..+.+|++|++.+|++. .+|..++.+++|+.|++.-|++. +.|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 555667777777777775 45556777777777777777776 67777777777777777777766 7777777777777
Q ss_pred eeecccccCc-ccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccC
Q 036593 142 MLQASFNVID-GNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSN 220 (574)
Q Consensus 142 ~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 220 (574)
.||+..|++. ..+|..|..|+.|+.|.+++|.+. ..|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 7777776654 356666667777777777777664 55666777777777777777664 55666777777777777777
Q ss_pred cccccCCchh
Q 036593 221 QFSGRLPSTI 230 (574)
Q Consensus 221 ~~~~~~~~~~ 230 (574)
++. .+|.++
T Consensus 184 rl~-vlppel 192 (264)
T KOG0617|consen 184 RLT-VLPPEL 192 (264)
T ss_pred eee-ecChhh
Confidence 766 555444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=5.8e-17 Score=130.80 Aligned_cols=163 Identities=33% Similarity=0.608 Sum_probs=113.9
Q ss_pred CCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCe
Q 036593 362 NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNK 441 (574)
Q Consensus 362 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 441 (574)
.+.+++.|.++.|.++ ..+..+..+.+|+.|++.+|+++ .+|..+..+++|+.|++.-|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-------------------~lp~~issl~klr~lnvgmnr 90 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-------------------ELPTSISSLPKLRILNVGMNR 90 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-------------------hcChhhhhchhhhheecchhh
Confidence 4455666666666666 34445666667777777777666 566667777777777777777
Q ss_pred ecccCCccccCCCCCCeEeCCCCccee-cCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCc
Q 036593 442 LTSSIPSSLWSLEYILEINLSSNSLND-SLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPE 520 (574)
Q Consensus 442 ~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 520 (574)
+. ..|..|+.++.|+.|++++|.+.+ ..|+.|-.++.|+.|.++.|++. .+|..++.+++|+-|.++.|.+. .+|.
T Consensus 91 l~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk 167 (264)
T KOG0617|consen 91 LN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK 167 (264)
T ss_pred hh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH
Confidence 65 667777777777777777777654 36666777777777777777777 56666777777777777777777 6777
Q ss_pred cccCCcCCCeeeCCCCcccccCCcCccc
Q 036593 521 SVGSLISLESLDLSGNNFSGKIPKSLEA 548 (574)
Q Consensus 521 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~ 548 (574)
.++.++.|++|.++||.++ .+|..+++
T Consensus 168 eig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHHHHHHHHHHhcccceee-ecChhhhh
Confidence 7777777777777777777 44444443
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.46 E-value=3.3e-14 Score=151.08 Aligned_cols=162 Identities=20% Similarity=0.175 Sum_probs=120.6
Q ss_pred hHHHHHHhhHhcccccCCCCccceee----e-------eecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCc
Q 036593 9 NLFQSHLAIMLLYLLKTTNMRLSWVG----I-------SCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNN 77 (574)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 77 (574)
.+++|||+|++.|.|.+++-.-+-.. . +-......+|++.+.++.+.. ++.. ..++.|++|-+.++.
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~ 556 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNS 556 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh-ccCC-CCCCccceEEEeecc
Confidence 78999999999999998833222221 0 001123467888887777653 3332 345689999999886
Q ss_pred --ccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCc
Q 036593 78 --FYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIP 155 (574)
Q Consensus 78 --~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (574)
+.......|..++.|++||+++|.-...+|..++.+-+||+|+++++.+. .+|..+.++..|.+|++..+......+
T Consensus 557 ~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 557 DWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred hhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc
Confidence 44444556888999999999988766689999999999999999999988 888899999999999998876554555
Q ss_pred hhccCCCCCCEEEccCCc
Q 036593 156 SGIGNLSNLFDLDLRHNN 173 (574)
Q Consensus 156 ~~l~~l~~L~~L~l~~~~ 173 (574)
.....+++||+|.+....
T Consensus 636 ~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRSA 653 (889)
T ss_pred chhhhcccccEEEeeccc
Confidence 656668899999887654
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.38 E-value=1e-14 Score=131.62 Aligned_cols=195 Identities=23% Similarity=0.272 Sum_probs=92.8
Q ss_pred cccCCCCCcEEECcCCCCcccCCcC----ccccCCCCeEeccCCcccccCCC----CCceEEccCCeeeecCCccCcCCC
Q 036593 359 EIGNLRGLILLTLDFNDLNGTIPTS----VGTLQQLQGLSLEDNNLEGSIPY----DLCHLELNGNKLSGHIPPCLASLT 430 (574)
Q Consensus 359 ~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~l~~~~l~~~~~~~~~~~~ 430 (574)
++..+++|+++++|+|.+....+.. +.++..|++|+|.+|++....-. .+..+. .......-+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~---------~~kk~~~~~ 157 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA---------VNKKAASKP 157 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH---------HHhccCCCc
Confidence 3445567777777777665443333 34567777777777776521000 000000 011122334
Q ss_pred CCCeEECCCCeeccc----CCccccCCCCCCeEeCCCCcceec----CCccccCCCCCCEEeCCCCccccc----Ccccc
Q 036593 431 SLRELRLGSNKLTSS----IPSSLWSLEYILEINLSSNSLNDS----LPSNVQKLKVLRVLDLSRNQLSGN----IPSTI 498 (574)
Q Consensus 431 ~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~ 498 (574)
.|+++...+|++... ....|+..+.|+.+.++.|.|... ....+..|++|++||+..|-++.. ....+
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 555555555554322 122344455555555555554322 123445555555555555554422 12334
Q ss_pred cCCCCCCEeeCCCCcccccCCccc-----cCCcCCCeeeCCCCcccc----cCCcCcccCCCCCeEeccCCcc
Q 036593 499 GALVDLETLSLASNQFQGPIPESV-----GSLISLESLDLSGNNFSG----KIPKSLEALSHLKQFNVSQNML 562 (574)
Q Consensus 499 ~~~~~L~~L~l~~n~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~l~l~~n~~ 562 (574)
..+++|++|++++|.+......++ ...|+|+.|.+.+|.++. .+..+....|.|+.|++++|.+
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 445555555555555543322221 223555555555555543 1112233445555666665555
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.26 E-value=8.6e-14 Score=125.79 Aligned_cols=249 Identities=20% Similarity=0.241 Sum_probs=121.9
Q ss_pred cCCCCccEEeCCCCceeec----CCCCccCCCcCceEEccCCcccccC--CCCccccccccccCCCCCcEEEccCCCCCC
Q 036593 256 TNASKLIGLDLGSNSFSGH----IPNTFGNLRHLNVLSIRTNNLTTES--SSADQWSFLSSLTNCRKLSYLVLDSNPLGG 329 (574)
Q Consensus 256 ~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 329 (574)
.....++.++++||.+... ....+.+.++|+..+++.--..... ......-+...+.+++.|++|++|+|-+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3445566666666665432 2233444556666655442111100 000011133456677777777777777665
Q ss_pred CCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcC-------------ccccCCCCeEecc
Q 036593 330 ILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTS-------------VGTLQQLQGLSLE 396 (574)
Q Consensus 330 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~ 396 (574)
..+..+..+ +.++..|++|.+.+|.+....... ...-++|+++...
T Consensus 107 ~g~~~l~~l---------------------l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 107 KGIRGLEEL---------------------LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred cchHHHHHH---------------------HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 444433332 234455555555555443221111 1122334444444
Q ss_pred CCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeeccc----CCccccCCCCCCeEeCCCCcceec---
Q 036593 397 DNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS----IPSSLWSLEYILEINLSSNSLNDS--- 469 (574)
Q Consensus 397 ~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~~~l~~~--- 469 (574)
+|++....- ..+...|...+.|+.+.++.|.|... ...++..|++|+.|+|.+|.++..
T Consensus 166 rNrlen~ga--------------~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 166 RNRLENGGA--------------TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred ccccccccH--------------HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 443321000 01223344556666666666655422 223455566666666666655432
Q ss_pred -CCccccCCCCCCEEeCCCCcccccCcccc-----cCCCCCCEeeCCCCccccc----CCccccCCcCCCeeeCCCCccc
Q 036593 470 -LPSNVQKLKVLRVLDLSRNQLSGNIPSTI-----GALVDLETLSLASNQFQGP----IPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 470 -~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+...++.+++|+.|++++|.+.......| ...|+|++|.+.+|.++.. +..+....+.|+.|+|++|.+.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 23344556666777777766654333222 2256777777777766642 1122334566777777777763
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=2.4e-12 Score=113.95 Aligned_cols=203 Identities=23% Similarity=0.271 Sum_probs=138.7
Q ss_pred cCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCccccc---CCCCCceEEccC---CeeeecCCccCcC
Q 036593 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGS---IPYDLCHLELNG---NKLSGHIPPCLAS 428 (574)
Q Consensus 355 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~l~l~~---~~l~~~~~~~~~~ 428 (574)
.+|..+..+.+|..+.++.+.-..+ .+....-|.|+++.+....+... .|.. ...+..+ .-.+|........
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~~~l~pe~-~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDVPSLLPET-ILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred ccccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccccccccchh-hhcCccCCCCCccCCceEEecch
Confidence 3445556667777777777654322 11222346778887776654431 1211 1111111 1111222223344
Q ss_pred CCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEee
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLS 508 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 508 (574)
...|+++|+++|.|+ .+.....-.|.++.|++++|.+... +.++.+++|..||+++|.+. ...++-..+.++++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 567999999999987 5566666778999999999998754 44788899999999999887 4445656688999999
Q ss_pred CCCCcccccCCccccCCcCCCeeeCCCCcccccCC-cCcccCCCCCeEeccCCccccc
Q 036593 509 LASNQFQGPIPESVGSLISLESLDLSGNNFSGKIP-KSLEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 509 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~l~l~~n~~~~~ 565 (574)
+++|.+... +++..+.+|..||+++|+|..... ..++++|-|+++.+.+||+.+.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999988743 577888899999999999875322 3588899999999999998764
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=6.2e-12 Score=106.97 Aligned_cols=127 Identities=28% Similarity=0.358 Sum_probs=49.6
Q ss_pred CcCCCCCCeEECCCCeecccCCcccc-CCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCC
Q 036593 426 LASLTSLRELRLGSNKLTSSIPSSLW-SLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDL 504 (574)
Q Consensus 426 ~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L 504 (574)
+.++.++++|+|.+|+|+.. +.+. .+.+|+.|++++|.+... +.+..++.|++|++++|.++.........+|+|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 34556789999999988733 2333 467889999999998754 357788999999999999985433222468899
Q ss_pred CEeeCCCCcccccC-CccccCCcCCCeeeCCCCcccccCCc----CcccCCCCCeEec
Q 036593 505 ETLSLASNQFQGPI-PESVGSLISLESLDLSGNNFSGKIPK----SLEALSHLKQFNV 557 (574)
Q Consensus 505 ~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~l~l 557 (574)
++|++++|++.... -..+..+++|+.|++.+|++... +. .+..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 99999999887532 24567788999999999998853 32 3567888988874
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4e-12 Score=118.41 Aligned_cols=67 Identities=19% Similarity=0.105 Sum_probs=32.3
Q ss_pred CCCccEEeCCCCceeecCC-CCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCC
Q 036593 258 ASKLIGLDLGSNSFSGHIP-NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330 (574)
Q Consensus 258 ~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 330 (574)
+.+|+.+.+.++....... .....+++++.|+++.|-+.... .+......+|+|+.|+++.|.+...
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~------~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF------PVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH------HHHHHHHhcccchhcccccccccCC
Confidence 4445555555554432111 23345566666666655444321 1223344556666666666655433
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4.1e-12 Score=118.35 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=18.5
Q ss_pred CCCCccEEeCCCCceeec-CCCCccCCCcCceEEccCCccccc
Q 036593 257 NASKLIGLDLGSNSFSGH-IPNTFGNLRHLNVLSIRTNNLTTE 298 (574)
Q Consensus 257 ~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~ 298 (574)
.+++|++|++..|++.++ ....+..+++|+.|.+..+.+...
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 344555555555555321 112233344455555444444443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=1.8e-11 Score=108.51 Aligned_cols=131 Identities=31% Similarity=0.402 Sum_probs=100.5
Q ss_pred ccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCc
Q 036593 386 TLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNS 465 (574)
Q Consensus 386 ~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~ 465 (574)
....|+++++++|.|+ .+.....-.|.++.|++++|.+.... .++.+++|+.|+|++|.
T Consensus 282 TWq~LtelDLS~N~I~-------------------~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-------------------QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNL 340 (490)
T ss_pred hHhhhhhccccccchh-------------------hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccch
Confidence 3456667777777666 66667777889999999999987432 37778999999999998
Q ss_pred ceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccccc-CCccccCCcCCCeeeCCCCcccc
Q 036593 466 LNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGP-IPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 466 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
+... .+.=..+.+.++|.+++|.+.. .+.++.+-+|..|++++|+|... -...++++|.|+.+.+.+|++..
T Consensus 341 Ls~~-~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 341 LAEC-VGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hHhh-hhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 8643 3333567889999999998873 34577888999999999988752 22457899999999999999873
No 31
>PLN03150 hypothetical protein; Provisional
Probab=99.11 E-value=2.9e-10 Score=118.95 Aligned_cols=119 Identities=29% Similarity=0.573 Sum_probs=92.3
Q ss_pred ceeeeeecCC----CCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCC
Q 036593 31 SWVGISCDSR----HQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106 (574)
Q Consensus 31 ~~~~~~~~~~----~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 106 (574)
.|.|+.|... ...++.|+++++.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|++|++++|++.+..
T Consensus 403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 403 PWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482 (623)
T ss_pred ccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC
Confidence 6999999531 124788888888888888888888888888888888888888888888888888888888888888
Q ss_pred CccccCCCCCCEEEccCCcccccCCcCCCCC-CCCceeeccccc
Q 036593 107 PTWIGVLSKLQIMSLRNNNITGPIPNSLFNL-SKLEMLQASFNV 149 (574)
Q Consensus 107 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~ 149 (574)
|..++++++|++|++++|.+.+..|..+... .++..+++.+|.
T Consensus 483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred chHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 8888888888888888888877777665542 344555555544
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.8e-10 Score=98.11 Aligned_cols=110 Identities=30% Similarity=0.381 Sum_probs=44.5
Q ss_pred cCCCCCCeEeCCCCcceecCCcccc-CCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccc-cCCcCC
Q 036593 451 WSLEYILEINLSSNSLNDSLPSNVQ-KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV-GSLISL 528 (574)
Q Consensus 451 ~~~~~L~~L~L~~~~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l-~~~~~L 528 (574)
.++.++++|+|.+|.|... +.+. .+.+|++|++++|.+... ..+..++.|++|++++|.++. +...+ ..+|+|
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 3556789999999999754 3344 578999999999999954 357889999999999999995 44444 468999
Q ss_pred CeeeCCCCcccccC-CcCcccCCCCCeEeccCCccccc
Q 036593 529 ESLDLSGNNFSGKI-PKSLEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 529 ~~L~l~~n~~~~~~-~~~l~~l~~L~~l~l~~n~~~~~ 565 (574)
++|++++|++.... ...+..+++|+.|++.+||+...
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 99999999998632 25678899999999999999753
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=2.5e-10 Score=114.25 Aligned_cols=179 Identities=35% Similarity=0.597 Sum_probs=105.0
Q ss_pred CCCcEEECcCCCCcccCCcCcccc-CCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCee
Q 036593 364 RGLILLTLDFNDLNGTIPTSVGTL-QQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKL 442 (574)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 442 (574)
+.++.+++.++.++.. +...... ++|+.|++++|++. .++..+..+++|+.|++++|++
T Consensus 116 ~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-------------------~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 116 TNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-------------------SLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred cceeEEecCCcccccC-ccccccchhhcccccccccchh-------------------hhhhhhhccccccccccCCchh
Confidence 4556666666655532 2222233 25666666665555 3334456667777777777776
Q ss_pred cccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccc
Q 036593 443 TSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV 522 (574)
Q Consensus 443 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 522 (574)
. ..+......+.|+.|++++|.+... +........|+++.+++|+.. ..+..+..++++..+.+.+|++. ..+..+
T Consensus 176 ~-~l~~~~~~~~~L~~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~ 251 (394)
T COG4886 176 S-DLPKLLSNLSNLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESI 251 (394)
T ss_pred h-hhhhhhhhhhhhhheeccCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchh
Confidence 5 3333333566777777777776543 222233445777777777533 23445666667777777777666 234555
Q ss_pred cCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCC
Q 036593 523 GSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 523 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
..+++++.|++++|.++.... +..+.+++.+++++|.++..+|.
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 666667777777777764333 66667777777777776666554
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.02 E-value=1.1e-10 Score=124.57 Aligned_cols=248 Identities=20% Similarity=0.257 Sum_probs=155.4
Q ss_pred CCcEEEEEcCCCC--CccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCE
Q 036593 41 HQRVKALNLSGMG--LGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQI 118 (574)
Q Consensus 41 ~~~~~~l~l~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 118 (574)
.+.+++|-+.++. +.......|..++.|++|||++|.-.+.+|..++.+.+||+|+++++.+. .+|..++++..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3568888888886 44344445888999999999999877899999999999999999999998 89999999999999
Q ss_pred EEccCCcccccCCcCCCCCCCCceeecccccCc--ccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCC----EEE
Q 036593 119 MSLRNNNITGPIPNSLFNLSKLEMLQASFNVID--GNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLE----SLA 192 (574)
Q Consensus 119 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~ 192 (574)
|++..+......+.....+.+||+|.+...... ...-..+.++.+|+.+....... .....+..++.|. .+.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhh
Confidence 999988765455666667999999999776532 22223345666666666644332 1112233333333 222
Q ss_pred ccCCcccccCchhhcccCCCcEEEcccCcccccCCchhh----cC-CCCcCeeecccccceecCCcCccCCCCccEEeCC
Q 036593 193 LGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIG----HS-LPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLG 267 (574)
Q Consensus 193 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 267 (574)
+.++.. ...+..+..+.+|+.|.+.++.+.+....... .. ++++..+.+..+... -.+.+....++|+.|.+.
T Consensus 701 ~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 701 IEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLV 778 (889)
T ss_pred hccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEe
Confidence 222222 24445667788888888888876522111100 00 223333333333211 112222345677777777
Q ss_pred CCceeecCCCCccCCCcCceEEccCC
Q 036593 268 SNSFSGHIPNTFGNLRHLNVLSIRTN 293 (574)
Q Consensus 268 ~~~~~~~~~~~l~~l~~L~~L~l~~~ 293 (574)
.+...+........+..++.+.+..+
T Consensus 779 ~~~~~e~~i~~~k~~~~l~~~i~~f~ 804 (889)
T KOG4658|consen 779 SCRLLEDIIPKLKALLELKELILPFN 804 (889)
T ss_pred cccccccCCCHHHHhhhcccEEeccc
Confidence 77655444444444455554444333
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=1.1e-11 Score=119.27 Aligned_cols=167 Identities=30% Similarity=0.458 Sum_probs=89.1
Q ss_pred EeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCcc
Q 036593 346 YAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPC 425 (574)
Q Consensus 346 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~ 425 (574)
+++.+++. ++|..+..+..|+.+.++.|.+. .++.++..+..|+.++++.|++. ..|..
T Consensus 81 DlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-------------------~lp~~ 139 (722)
T KOG0532|consen 81 DLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-------------------HLPDG 139 (722)
T ss_pred hccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-------------------cCChh
Confidence 33444443 34444444445555555544444 33344444455555555555444 34444
Q ss_pred CcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCC
Q 036593 426 LASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLE 505 (574)
Q Consensus 426 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 505 (574)
+..+ -|+.|-+++|+++ .+|..++..++|..|+.+.|.+. .++..+.++.+|+.|.+..|++.. +|..+. .-.|.
T Consensus 140 lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi 214 (722)
T KOG0532|consen 140 LCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLI 214 (722)
T ss_pred hhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCcee
Confidence 4333 2666666666665 45555555566666666666654 344445556666666666666652 333343 34556
Q ss_pred EeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 506 TLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 506 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
.|++++|++. .+|-.|.+++.|+.|-|.+|++.
T Consensus 215 ~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 215 RLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 6666666666 56666666666666666666655
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=2.2e-11 Score=117.25 Aligned_cols=194 Identities=28% Similarity=0.442 Sum_probs=155.2
Q ss_pred CcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEc
Q 036593 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 121 (574)
......|++.|++. .+|..+..|..|..+.|.+|.+. .+|..+.++..|++|+|+.|+++ .+|..+..++ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 45567788888887 57777888888888999888874 67888999999999999999988 7777777775 899999
Q ss_pred cCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCccccc
Q 036593 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL 201 (574)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 201 (574)
++|+++ .+|..++..+.|..|+.+.|.+. .+|..++.+.+|+.|++.+|.+.. .|..+..+ .|..|+++.|++. .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee-e
Confidence 999988 78888888899999999999887 667778999999999999998874 56666655 4888999999987 7
Q ss_pred CchhhcccCCCcEEEcccCcccccCCchhhc--CCCCcCeeecccc
Q 036593 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGH--SLPNIEYLTLAIN 245 (574)
Q Consensus 202 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~l~~L~~L~l~~~ 245 (574)
+|..|.+|++|++|.|.+|.+. .-|..++. ...-.++|+...|
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 7888999999999999999887 55554431 1223455666555
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=3e-09 Score=106.48 Aligned_cols=196 Identities=36% Similarity=0.495 Sum_probs=135.6
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCC-CCCEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLG-RLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 124 (574)
.++.+.+.+...+. .+...+.++.|++.++.+. .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 35555555532222 2445577888888888875 4455555563 8888888888877 55566788888888888888
Q ss_pred cccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCch
Q 036593 125 NITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPP 204 (574)
Q Consensus 125 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 204 (574)
++. ..+......+.|+.|+++++.+. .+|........|+++.++.|.+. ..+..+..+.++..+.+.++++... +.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence 887 55555557788888888888887 56665556666888888888433 2445567777777777777776532 45
Q ss_pred hhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecC
Q 036593 205 AIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTI 251 (574)
Q Consensus 205 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 251 (574)
.+..++.++.|++++|.+. .++. + ....+++.++++++.+....
T Consensus 250 ~~~~l~~l~~L~~s~n~i~-~i~~-~-~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 250 SIGNLSNLETLDLSNNQIS-SISS-L-GSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hhccccccceecccccccc-cccc-c-cccCccCEEeccCccccccc
Confidence 5677777888888888877 4444 3 26778888888877665443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.6e-09 Score=75.63 Aligned_cols=59 Identities=36% Similarity=0.581 Sum_probs=30.5
Q ss_pred CCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCc
Q 036593 503 DLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNM 561 (574)
Q Consensus 503 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~ 561 (574)
+|++|++++|++....+..|..+++|+.|++++|.+....++.|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554444445555555555555555554444455555555555555554
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.86 E-value=4.5e-09 Score=110.10 Aligned_cols=109 Identities=31% Similarity=0.539 Sum_probs=72.2
Q ss_pred CCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCC
Q 036593 432 LRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLAS 511 (574)
Q Consensus 432 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 511 (574)
++.|+|++|.+.+..+..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|++.+..|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56667777776666666666667777777777776666666666667777777777776666666666677777777777
Q ss_pred CcccccCCccccCC-cCCCeeeCCCCcccc
Q 036593 512 NQFQGPIPESVGSL-ISLESLDLSGNNFSG 540 (574)
Q Consensus 512 n~~~~~~~~~l~~~-~~L~~L~l~~n~~~~ 540 (574)
|.+.+.+|..+... .++..+++.+|...+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 77666666665543 345566666665543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.9e-09 Score=75.29 Aligned_cols=61 Identities=39% Similarity=0.549 Sum_probs=36.4
Q ss_pred CCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcc
Q 036593 478 KVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNF 538 (574)
Q Consensus 478 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 538 (574)
|+|++|++++|++....+..|.++++|++|++++|.+....+.+|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3455666666666555555566666666666666666655555666666666666666653
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.1e-10 Score=97.79 Aligned_cols=110 Identities=21% Similarity=0.141 Sum_probs=63.8
Q ss_pred CcEEEEEcCCCCCccc-cCCCccCC-CCCcEEEccCCcccc-cCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCE
Q 036593 42 QRVKALNLSGMGLGGT-IPPHLGNL-SFLMSLDVTLNNFYG-HLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQI 118 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~-~~~~~~~~-~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 118 (574)
+.+.++-+-..-+.+. ..+.+.-+ ..|+.|||+...++. .....++.|.+|+.|++.++++.+.+...+++..+|+.
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 4455555544333321 22333322 357777777766652 33445677777888888777777767777777777777
Q ss_pred EEccCCcccccC--CcCCCCCCCCceeecccccCc
Q 036593 119 MSLRNNNITGPI--PNSLFNLSKLEMLQASFNVID 151 (574)
Q Consensus 119 L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~ 151 (574)
|+++.+.--... .--+.+|..|..|+++.|...
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 777776422110 011345666666666666543
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=5e-09 Score=104.95 Aligned_cols=62 Identities=27% Similarity=0.326 Sum_probs=28.2
Q ss_pred CCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccc
Q 036593 234 LPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTT 297 (574)
Q Consensus 234 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 297 (574)
+..++.+.+..+.+.. ....+..+++++.+++.+|.+..... .+..+++|+.|++++|.|+.
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~ 132 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK 132 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccc
Confidence 3444444444444432 11224444555555555555542211 14445555555555555544
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=7.8e-10 Score=98.20 Aligned_cols=227 Identities=19% Similarity=0.160 Sum_probs=116.0
Q ss_pred CcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCccccc-CchhhcCC-CCCCEEEccCCcCccC-CCccccCCCCCCE
Q 036593 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGH-LPNELGKL-GRLKFISFSFNKLSGS-IPTWIGVLSKLQI 118 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~ 118 (574)
.-.+.+|+.+..+.......+.. ..+.++.+........ +...+.-+ ..|++|||+...++.. +-..++.|.+|+.
T Consensus 136 ~lW~~lDl~~r~i~p~~l~~l~~-rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 136 SLWQTLDLTGRNIHPDVLGRLLS-RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred cceeeeccCCCccChhHHHHHHh-CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 45667787777665332222211 3455565553333222 22223322 3578888877665422 2334567778888
Q ss_pred EEccCCcccccCCcCCCCCCCCceeecccccCccc--CchhccCCCCCCEEEccCCcCCcCCCcc-ccC-CCCCCEEEcc
Q 036593 119 MSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGN--IPSGIGNLSNLFDLDLRHNNLQDQIPTE-IGN-LQNLESLALG 194 (574)
Q Consensus 119 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~-l~~L~~L~l~ 194 (574)
|.+.++.+.+.+...+.+..+|+.++++.+.-... ..-.+.+|+.|.+|+++.|........+ +.. -++|..|+++
T Consensus 215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls 294 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS 294 (419)
T ss_pred ccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh
Confidence 88888777766666677777788888777643211 1122456677777777766544221111 111 1345555555
Q ss_pred CCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccc-eecCCcCccCCCCccEEeCCCCceee
Q 036593 195 TNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL-IGTIPDSLTNASKLIGLDLGSNSFSG 273 (574)
Q Consensus 195 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~ 273 (574)
++.-. +.....+.+.+.+|+|..||++++.. +......|.+++.|++|.++.|..
T Consensus 295 G~rrn----------------------l~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~-- 350 (419)
T KOG2120|consen 295 GYRRN----------------------LQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD-- 350 (419)
T ss_pred hhHhh----------------------hhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--
Confidence 44311 11111222333455555555554422 222223345566666666666532
Q ss_pred cCCC---CccCCCcCceEEccCC
Q 036593 274 HIPN---TFGNLRHLNVLSIRTN 293 (574)
Q Consensus 274 ~~~~---~l~~l~~L~~L~l~~~ 293 (574)
+.|. .+...|.|.+|++.++
T Consensus 351 i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 351 IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CChHHeeeeccCcceEEEEeccc
Confidence 2222 2455667777776665
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.49 E-value=2.6e-08 Score=99.75 Aligned_cols=192 Identities=31% Similarity=0.348 Sum_probs=103.6
Q ss_pred cCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCC----CCCceEEccCCeeeecCCccCcCCCCCCeEE
Q 036593 361 GNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP----YDLCHLELNGNKLSGHIPPCLASLTSLRELR 436 (574)
Q Consensus 361 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~ 436 (574)
..+++|+.+++.+|.+..... .+..+++|++|++++|.|+...+ ..|+.|++++|.+... ..+..+++|+.++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred ccccceeeeeccccchhhccc-chhhhhcchheeccccccccccchhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 344445555555554442211 13344555555555555443211 1133333333333311 2344477778888
Q ss_pred CCCCeecccCC-ccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCC--CCEeeCCCCc
Q 036593 437 LGSNKLTSSIP-SSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVD--LETLSLASNQ 513 (574)
Q Consensus 437 l~~n~~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--L~~L~l~~n~ 513 (574)
+++|.+...-. . ...+.+++.+.+.+|.+... ..+..+..+..+++..|.+.... .+...+. |+.+++++|+
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNR 243 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCc
Confidence 88887763322 1 45667777777877777543 22334445555577777666322 1223333 7888888888
Q ss_pred ccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccc
Q 036593 514 FQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563 (574)
Q Consensus 514 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~ 563 (574)
+. ..+..+..+..+..+++..|++... ..+...+.+..+....+++.
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 77 3435667777788888888777642 33444455555566555544
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=7.2e-09 Score=103.06 Aligned_cols=126 Identities=30% Similarity=0.327 Sum_probs=77.8
Q ss_pred CceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCC
Q 036593 408 LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSR 487 (574)
Q Consensus 408 l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~ 487 (574)
+...+++.|.++ .++..+.-++.|+.|+|++|++... +.+..+++|++|||+.|.++...--....|. |..|++++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 445556666665 5555666677777777777777533 2666677777777777777544333333444 77777777
Q ss_pred CcccccCcccccCCCCCCEeeCCCCccccc-CCccccCCcCCCeeeCCCCccc
Q 036593 488 NQLSGNIPSTIGALVDLETLSLASNQFQGP-IPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 488 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
|.++. + ..+.++.+|+.|++++|-+.+- .-..+..+..|+.|.|.||++-
T Consensus 242 N~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77662 2 3356677777777777766532 1123445566777777777764
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.37 E-value=1.1e-08 Score=95.49 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=27.2
Q ss_pred cCCCCCcEEEccCCc-cccc-CchhhcCCCCCCEEEccCCc-CccCCCcc-ccCCCCCCEEEccCCc
Q 036593 63 GNLSFLMSLDVTLNN-FYGH-LPNELGKLGRLKFISFSFNK-LSGSIPTW-IGVLSKLQIMSLRNNN 125 (574)
Q Consensus 63 ~~~~~L~~L~L~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~-~~~l~~L~~L~l~~~~ 125 (574)
..|+++++|.+.+|. ++.. ....-..|++|++|++..|. +++..-.. -..+++|++++++++.
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 445555555555553 2111 11222345555555555532 22222221 1235555555555553
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.37 E-value=3.1e-08 Score=87.01 Aligned_cols=196 Identities=19% Similarity=0.155 Sum_probs=124.0
Q ss_pred ccccCCCCCcEEECcCCCCcccCCcC----ccccCCCCeEeccCCcccccCCCCCceEEccCCeeee-----cCCccCcC
Q 036593 358 KEIGNLRGLILLTLDFNDLNGTIPTS----VGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG-----HIPPCLAS 428 (574)
Q Consensus 358 ~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~-----~~~~~~~~ 428 (574)
+++-.||+|+.++++.|.+....+.. ++.-..|++|.+++|++.-..-. ++.. ..-.-...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~----------rigkal~~la~nKKaa~ 155 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGG----------RIGKALFHLAYNKKAAD 155 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchh----------HHHHHHHHHHHHhhhcc
Confidence 45678899999999999877554443 35567888899888876521100 0000 00112345
Q ss_pred CCCCCeEECCCCeecccCC----ccccCCCCCCeEeCCCCcceecC-----CccccCCCCCCEEeCCCCcccccC----c
Q 036593 429 LTSLRELRLGSNKLTSSIP----SSLWSLEYILEINLSSNSLNDSL-----PSNVQKLKVLRVLDLSRNQLSGNI----P 495 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~L~~~~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~----~ 495 (574)
-|.|+......|++..-.. ..+..-..|+++.+..|.|.... ...+..+++|++||+..|-++... .
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 6889999999988753211 12333457889999988885442 224466788999999988876432 3
Q ss_pred ccccCCCCCCEeeCCCCcccccCCcc----c--cCCcCCCeeeCCCCcccccCCcC-----c--ccCCCCCeEeccCCcc
Q 036593 496 STIGALVDLETLSLASNQFQGPIPES----V--GSLISLESLDLSGNNFSGKIPKS-----L--EALSHLKQFNVSQNML 562 (574)
Q Consensus 496 ~~~~~~~~L~~L~l~~n~~~~~~~~~----l--~~~~~L~~L~l~~n~~~~~~~~~-----l--~~l~~L~~l~l~~n~~ 562 (574)
..+..++.|++|.+..|-++...... | ...|+|..|...+|.+....-.. + ..+|-|..+.+.+|+|
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 45566788899999998776543322 1 23377888888888765422111 1 2466677777777776
Q ss_pred c
Q 036593 563 E 563 (574)
Q Consensus 563 ~ 563 (574)
+
T Consensus 316 ~ 316 (388)
T COG5238 316 K 316 (388)
T ss_pred h
Confidence 5
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.1e-07 Score=84.86 Aligned_cols=187 Identities=18% Similarity=0.182 Sum_probs=88.3
Q ss_pred CCCCCceeecccccCcc--cCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccc-cCchhhcccCCC
Q 036593 136 NLSKLEMLQASFNVIDG--NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSG-LIPPAIFNISTI 212 (574)
Q Consensus 136 ~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L 212 (574)
.+..++.+++..|.+.. .+..-+.++|.|+.|+++.|.+...+...=....+|++|-+.+..+.- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45666667776666642 222334666777777777666553221111234456666665554431 222334455555
Q ss_pred cEEEcccCcccc--cCCchhhcCCCCcCeeecccccceecC--CcCccCCCCccEEeCCCCceeec-CCCCccCCCcCce
Q 036593 213 RVLNLHSNQFSG--RLPSTIGHSLPNIEYLTLAINNLIGTI--PDSLTNASKLIGLDLGSNSFSGH-IPNTFGNLRHLNV 287 (574)
Q Consensus 213 ~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~ 287 (574)
++|.++.|.+.- .......+-.+.++++....|...... ...-..+|++..+.+..|++... ..+.+..+|.+--
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 666555552220 000001111223444444333322100 01112355666666666655422 2233444555556
Q ss_pred EEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCC
Q 036593 288 LSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGG 329 (574)
Q Consensus 288 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 329 (574)
|++..+++.. |.-...+.+++.|..|.++++++.+
T Consensus 229 LnL~~~~ids-------wasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 229 LNLGANNIDS-------WASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhccccccc-------HHHHHHHcCCchhheeeccCCcccc
Confidence 6665555543 2334456666666666666666654
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=1.8e-07 Score=83.50 Aligned_cols=233 Identities=17% Similarity=0.162 Sum_probs=122.3
Q ss_pred CCcEEEccCCccccc--CchhhcCCCCCCEEEccCCcCccC--CCccccCCCCCCEEEccCCcccccCCcCC-CCCCCCc
Q 036593 67 FLMSLDVTLNNFYGH--LPNELGKLGRLKFISFSFNKLSGS--IPTWIGVLSKLQIMSLRNNNITGPIPNSL-FNLSKLE 141 (574)
Q Consensus 67 ~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~ 141 (574)
-+..+.+.++.+..+ ....-..+..++.+||.+|.+++. +...+.++|.|++|+++.|.+...+ ..+ ....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceE
Confidence 344556666665432 222224567888888888887642 3344667888888888888766222 222 3456777
Q ss_pred eeecccccCcc-cCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccC
Q 036593 142 MLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSN 220 (574)
Q Consensus 142 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 220 (574)
.|.++++.+.. .....+..+|.+++|.++.|.+. .+.+..+.+.... +.++.+.+.+|
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r--------------q~n~Dd~c~e~~s-------~~v~tlh~~~c 183 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR--------------QLNLDDNCIEDWS-------TEVLTLHQLPC 183 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh--------------hhccccccccccc-------hhhhhhhcCCc
Confidence 77777776542 22233456667777777666322 1122221111111 12222333232
Q ss_pred ccccc-CCchhhcCCCCcCeeecccccceecC-CcCccCCCCccEEeCCCCceeec-CCCCccCCCcCceEEccCCcccc
Q 036593 221 QFSGR-LPSTIGHSLPNIEYLTLAINNLIGTI-PDSLTNASKLIGLDLGSNSFSGH-IPNTFGNLRHLNVLSIRTNNLTT 297 (574)
Q Consensus 221 ~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~ 297 (574)
...-. --..+.+.+|++..+.+..|.+.+.. ...+..++.+..|.++.+++.++ ..+.+..++.|..|+++++++.+
T Consensus 184 ~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 184 LEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 21100 00111224566666666666554332 23344566666777777776543 23456777788888887777665
Q ss_pred cCCCCccccccccccCCCCCcEEEcc
Q 036593 298 ESSSADQWSFLSSLTNCRKLSYLVLD 323 (574)
Q Consensus 298 ~~~~~~~~~~~~~l~~~~~L~~L~l~ 323 (574)
.-.... ...-.++.+++++.|+=+
T Consensus 264 ~l~~~e--rr~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 264 PLRGGE--RRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cccCCc--ceEEEEeeccceEEecCc
Confidence 322211 122235677777777644
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.32 E-value=3.6e-08 Score=86.66 Aligned_cols=250 Identities=21% Similarity=0.270 Sum_probs=155.1
Q ss_pred cCCCCccEEeCCCCceeecCCCC----ccCCCcCceEEccCCccccc--CCCCccccccccccCCCCCcEEEccCCCCCC
Q 036593 256 TNASKLIGLDLGSNSFSGHIPNT----FGNLRHLNVLSIRTNNLTTE--SSSADQWSFLSSLTNCRKLSYLVLDSNPLGG 329 (574)
Q Consensus 256 ~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 329 (574)
..+..+..++++||.+......+ +.+-.+|+..+++.--.... .......-+...+.+||.|+.++++.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34678899999999886544333 44556777777655321111 1111111245567889999999999998876
Q ss_pred CCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCcc-------------ccCCCCeEecc
Q 036593 330 ILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVG-------------TLQQLQGLSLE 396 (574)
Q Consensus 330 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------~~~~L~~L~l~ 396 (574)
..+.....+ +.+-+.|++|.+++|.+.......++ +-|.|+++...
T Consensus 107 ~~~e~L~d~---------------------is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 107 EFPEELGDL---------------------ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred ccchHHHHH---------------------HhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 655544433 45668899999999987644332222 12455555555
Q ss_pred CCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccC-----CccccCCCCCCeEeCCCCcceec--
Q 036593 397 DNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSI-----PSSLWSLEYILEINLSSNSLNDS-- 469 (574)
Q Consensus 397 ~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~L~~~~l~~~-- 469 (574)
.|++.. .| .......+..-.+|+++.+.+|.|.... ...+..+.+|+.|++.+|.++..
T Consensus 166 rNRlen-gs-------------~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 166 RNRLEN-GS-------------KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred cchhcc-Cc-------------HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence 555441 00 0011122333368999999999886331 12345678999999999987543
Q ss_pred --CCccccCCCCCCEEeCCCCcccccCccc----c--cCCCCCCEeeCCCCcccccCCcc-------ccCCcCCCeeeCC
Q 036593 470 --LPSNVQKLKVLRVLDLSRNQLSGNIPST----I--GALVDLETLSLASNQFQGPIPES-------VGSLISLESLDLS 534 (574)
Q Consensus 470 --~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~--~~~~~L~~L~l~~n~~~~~~~~~-------l~~~~~L~~L~l~ 534 (574)
+...+...+.|+.|.+..|-++...... | ...|+|..|...+|.+.+..... -..+|-|..+.+.
T Consensus 232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~n 311 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERN 311 (388)
T ss_pred HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHc
Confidence 3345566678999999999876443322 2 12588999999999655421111 1355778888889
Q ss_pred CCcccc
Q 036593 535 GNNFSG 540 (574)
Q Consensus 535 ~n~~~~ 540 (574)
||.+..
T Consensus 312 gNr~~E 317 (388)
T COG5238 312 GNRIKE 317 (388)
T ss_pred cCcchh
Confidence 998864
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=2e-08 Score=100.07 Aligned_cols=181 Identities=25% Similarity=0.214 Sum_probs=90.0
Q ss_pred CCCccCCCCCcEEEccCCcccccCchhhcCC-CCCCEEEccCC--cCccCCCcc---ccC---CCCCCEEEccCCccccc
Q 036593 59 PPHLGNLSFLMSLDVTLNNFYGHLPNELGKL-GRLKFISFSFN--KLSGSIPTW---IGV---LSKLQIMSLRNNNITGP 129 (574)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~-~~L~~L~l~~~--~~~~~~~~~---~~~---l~~L~~L~l~~~~~~~~ 129 (574)
|=.+..++.||+|.+.+|.+.. ...+..+ ..|+.|...+. .+.++.... +.+ .-.|.+.++++|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 4446678888888888888753 1112221 12333322211 011111111 111 124555666666655 4
Q ss_pred CCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhccc
Q 036593 130 IPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNI 209 (574)
Q Consensus 130 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 209 (574)
+...+.-++.++.|+|++|.+... ..+..|++|++||++.|.+.....-...++. |+.|.+.+|.++.. ..+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhh
Confidence 445555566666666666666522 2466666666666666655533222233333 66666666655433 334556
Q ss_pred CCCcEEEcccCcccccCCchhhcCCCCcCeeecccccc
Q 036593 210 STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL 247 (574)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 247 (574)
++|+.||+++|-+.+.-.-.....+..|+.|.+.+|.+
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66666666666554222112222344555555555543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=4.3e-08 Score=76.96 Aligned_cols=136 Identities=26% Similarity=0.274 Sum_probs=86.7
Q ss_pred CCCeEECCCCeecccCCc---cccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEe
Q 036593 431 SLRELRLGSNKLTSSIPS---SLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETL 507 (574)
Q Consensus 431 ~L~~L~l~~n~~~~~~~~---~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 507 (574)
.+-.++|+.|++. -+++ .+.....|+..+|++|.+.+..+..-...+.++.+++++|.+. ..|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3455667777664 2222 2334456677778888776554444455567788888888887 445557788888888
Q ss_pred eCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCCC
Q 036593 508 SLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKG 570 (574)
Q Consensus 508 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~~ 570 (574)
+++.|.+. ..|..+..+.+|-.|+..+|.+. .++.++-.-...-.+++.++++.++=|.++
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 88888887 56666666777788888888776 334332222333444567777777766554
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.15 E-value=3.9e-08 Score=91.84 Aligned_cols=106 Identities=21% Similarity=0.160 Sum_probs=52.9
Q ss_pred CCCCCCeEECCCCeeccc--CCccccCCCCCCeEeCCCCcce-ec----CCccccCCCCCCEEeCCCCccc-ccCccccc
Q 036593 428 SLTSLRELRLGSNKLTSS--IPSSLWSLEYILEINLSSNSLN-DS----LPSNVQKLKVLRVLDLSRNQLS-GNIPSTIG 499 (574)
Q Consensus 428 ~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~L~~~~l~-~~----~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~ 499 (574)
+++.|+.+++.+|..... +.....+++.|+++.+++|... +. ....-..+..|+.+.+++|+.. +.....+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 455566666655543211 2223334566666666655431 11 1112234566777777777653 23334556
Q ss_pred CCCCCCEeeCCCCccc-ccCC-ccccCCcCCCeeeC
Q 036593 500 ALVDLETLSLASNQFQ-GPIP-ESVGSLISLESLDL 533 (574)
Q Consensus 500 ~~~~L~~L~l~~n~~~-~~~~-~~l~~~~~L~~L~l 533 (574)
.|++|+.+++-+|+-. .... ..-.++|+++...+
T Consensus 424 ~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 6777777777777432 2111 22245556555433
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.13 E-value=5.9e-06 Score=68.12 Aligned_cols=126 Identities=13% Similarity=0.176 Sum_probs=71.5
Q ss_pred CCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCC
Q 036593 422 IPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGAL 501 (574)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 501 (574)
...+|.++++|+.+.+.. .+......+|..+.+|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 346788888999999875 455566778888888999998775 6556667788888899998876 4444556678888
Q ss_pred CCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCC
Q 036593 502 VDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLK 553 (574)
Q Consensus 502 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 553 (574)
++|+.+.+..+ +.......|.++ .|+.+.+.+ .+..+....|.++++|+
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 89999998765 554556678887 888888876 44445556777777764
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.10 E-value=1.6e-05 Score=76.63 Aligned_cols=132 Identities=20% Similarity=0.309 Sum_probs=73.0
Q ss_pred cCCCCeEeccCCcccc--cCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCC-eecccCCccccCCCCCCeEeCCC
Q 036593 387 LQQLQGLSLEDNNLEG--SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSN-KLTSSIPSSLWSLEYILEINLSS 463 (574)
Q Consensus 387 ~~~L~~L~l~~~~~~~--~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~L~~ 463 (574)
+.++++|++++|.++. .+|.+++.|.+++|.-...+|..+ .++|+.|++++| .+. .+| ++|+.|++.+
T Consensus 51 ~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceEEeCC
Confidence 4455555555554442 345566666666643222445444 357888888888 332 222 4577777776
Q ss_pred CcceecCCccccCCCCCCEEeCCCCc-ccc-cCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCC
Q 036593 464 NSLNDSLPSNVQKLKVLRVLDLSRNQ-LSG-NIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 536 (574)
Q Consensus 464 ~~l~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 536 (574)
+..... . .++ ++|+.|.+.+++ ... ..+..+ .++|++|++++|... ..|..++ .+|+.|+++.+
T Consensus 122 n~~~~L-~-~LP--ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 122 SATDSI-K-NVP--NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCCccc-c-cCc--chHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 654321 1 111 457777775432 110 011111 257888888888866 4555555 47888888766
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.09 E-value=5.4e-06 Score=70.10 Aligned_cols=82 Identities=30% Similarity=0.319 Sum_probs=36.0
Q ss_pred CCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccC-CccccCCcCCCeeeCC
Q 036593 456 ILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI-PESVGSLISLESLDLS 534 (574)
Q Consensus 456 L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~ 534 (574)
...++|++|.+... ..|+.++.|.+|.+++|.|+.+.+..-.-+++|+.|.+.+|.+.... -..+..||+|+.|.+-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 33444555544322 22444455555555555554444333333444555555555443211 1223444555555555
Q ss_pred CCccc
Q 036593 535 GNNFS 539 (574)
Q Consensus 535 ~n~~~ 539 (574)
+|+++
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 55544
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.05 E-value=4.1e-07 Score=95.13 Aligned_cols=196 Identities=19% Similarity=0.225 Sum_probs=93.1
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCch-------------hh--cCCCCCCEEEccCCc-CccCC
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPN-------------EL--GKLGRLKFISFSFNK-LSGSI 106 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-------------~~--~~~~~L~~L~l~~~~-~~~~~ 106 (574)
.+.++++.+..+.........+.. |+++.|.+....+.... .+ ..-.+|++|+++|.. +....
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W 139 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW 139 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence 455666665555444344344433 66666665432211000 00 011456666666643 22233
Q ss_pred Ccccc-CCCCCCEEEccCCcccc-cCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCc-CCCcccc
Q 036593 107 PTWIG-VLSKLQIMSLRNNNITG-PIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQD-QIPTEIG 183 (574)
Q Consensus 107 ~~~~~-~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~ 183 (574)
+..++ .+|+|++|.+.+-.+.. .......++|+|..||++++++.. + .+++++++|++|.+.+-.+.. .....+-
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 44444 36666666666644431 112223456666666666666652 2 456666666666665543332 1112344
Q ss_pred CCCCCCEEEccCCcccccC------chhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeee
Q 036593 184 NLQNLESLALGTNNLSGLI------PPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241 (574)
Q Consensus 184 ~l~~L~~L~l~~~~~~~~~------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 241 (574)
.+++|+.||++........ -+.-..+|+|+.||.+++.+.+.+.+.+...-|+|+.+.
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 5566666666554332111 011113456666666655555444444443344444433
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.03 E-value=1.6e-05 Score=65.52 Aligned_cols=101 Identities=16% Similarity=0.211 Sum_probs=42.7
Q ss_pred ccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCC
Q 036593 424 PCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVD 503 (574)
Q Consensus 424 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 503 (574)
..|.++++|+.+.+.++ +......+|..+++|+.+.+.+ .+.......|..+++|+.+++..+ +.......|.++ .
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 44556666666666553 4434445566665666666654 333344445566666666666543 433444556665 6
Q ss_pred CCEeeCCCCcccccCCccccCCcCCC
Q 036593 504 LETLSLASNQFQGPIPESVGSLISLE 529 (574)
Q Consensus 504 L~~L~l~~n~~~~~~~~~l~~~~~L~ 529 (574)
|+.+.+.. .+.......|.++++|+
T Consensus 105 l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 105 LKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp --EEE-TT-B-SS----GGG------
T ss_pred ceEEEECC-CccEECCccccccccCC
Confidence 66666665 33334445566665553
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=4.6e-05 Score=73.56 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=14.5
Q ss_pred CCCCeEECCCCeecccCCccccCCCCCCeEeCCCC
Q 036593 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSN 464 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~ 464 (574)
++|++|++++|... ..|..+. .+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 35555555555543 2222221 35555555443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.95 E-value=1.6e-05 Score=67.31 Aligned_cols=80 Identities=24% Similarity=0.233 Sum_probs=34.2
Q ss_pred eEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecC-CccccCCCCCCEEeCCCC
Q 036593 410 HLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSL-PSNVQKLKVLRVLDLSRN 488 (574)
Q Consensus 410 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~l~~L~~L~l~~n 488 (574)
.+++++|.+. -...|..+++|..|.+.+|+|+...+.--..++.|..|.+.+|.+.+.. ...+..||.|++|.+-+|
T Consensus 46 ~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 46 AIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred eecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 4444444442 1123444444555555555554444433333444444445444443321 122334444444444444
Q ss_pred ccc
Q 036593 489 QLS 491 (574)
Q Consensus 489 ~~~ 491 (574)
++.
T Consensus 124 pv~ 126 (233)
T KOG1644|consen 124 PVE 126 (233)
T ss_pred chh
Confidence 443
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=1.5e-06 Score=68.45 Aligned_cols=110 Identities=25% Similarity=0.312 Sum_probs=83.2
Q ss_pred CCCCeEeCCCCcceec--CCccccCCCCCCEEeCCCCcccccCcccccC-CCCCCEeeCCCCcccccCCccccCCcCCCe
Q 036593 454 EYILEINLSSNSLNDS--LPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA-LVDLETLSLASNQFQGPIPESVGSLISLES 530 (574)
Q Consensus 454 ~~L~~L~L~~~~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 530 (574)
..+..++|++|++... .+..+.....|+..+|++|.+.. .|..|.. .+.++.|++++|++. ..|..+..++.|+.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3567788999987432 23345566788889999999984 4444444 568999999999999 67888999999999
Q ss_pred eeCCCCcccccCCcCcccCCCCCeEeccCCccccccC
Q 036593 531 LDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIP 567 (574)
Q Consensus 531 L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 567 (574)
|+++.|++. ..|..+..+.++-.|+..+|.+ .+||
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~-~eid 139 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR-AEID 139 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCcc-ccCc
Confidence 999999998 5677777777777777776653 3444
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=2e-05 Score=50.07 Aligned_cols=36 Identities=42% Similarity=0.650 Sum_probs=14.1
Q ss_pred CCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccc
Q 036593 479 VLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQ 515 (574)
Q Consensus 479 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 515 (574)
+|++|++++|++.. ++..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444442 2222444444444444444443
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=4.2e-05 Score=48.58 Aligned_cols=36 Identities=42% Similarity=0.653 Sum_probs=19.3
Q ss_pred CCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 503 DLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 503 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+|++|++++|+++ .++..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4566666666665 33444556666666666666555
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=1.4e-05 Score=83.83 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=28.8
Q ss_pred ccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceE
Q 036593 279 FGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSF 345 (574)
Q Consensus 279 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 345 (574)
+.++++|+.||++........ .....+.+.-..+|.|+.||.++..+.+...+.+-..-++++.+
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred HhcccCCCeeeccccccccch--HHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 334555555555443322221 01112333344566777777776655544333333333333333
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=5.3e-06 Score=73.64 Aligned_cols=99 Identities=28% Similarity=0.326 Sum_probs=55.1
Q ss_pred CCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccC-CccccCCcCCCeee
Q 036593 454 EYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI-PESVGSLISLESLD 532 (574)
Q Consensus 454 ~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~ 532 (574)
.+.++|++.+|.+.++. ....|+.|++|.|+-|.|+.. ..+..|++|++|+|+.|.|.+.. -..+.++|+|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34455566666555432 134566666666666666632 23566667777777776665321 13356666677776
Q ss_pred CCCCcccccCCc-----CcccCCCCCeEe
Q 036593 533 LSGNNFSGKIPK-----SLEALSHLKQFN 556 (574)
Q Consensus 533 l~~n~~~~~~~~-----~l~~l~~L~~l~ 556 (574)
|..|+=.+..+. .++-+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 666654432221 245566666664
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.31 E-value=0.00013 Score=64.75 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=16.6
Q ss_pred CCCCCEeeCCCCcccc-cCCccccCCcCCCeeeCCCCccc
Q 036593 501 LVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 501 ~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+|+|++|++++|++.. .....+..+.+|..|++..|..+
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 3555555555554442 11122333344445555555444
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.29 E-value=1.3e-05 Score=82.88 Aligned_cols=39 Identities=23% Similarity=0.205 Sum_probs=24.6
Q ss_pred CCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCC
Q 036593 281 NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSN 325 (574)
Q Consensus 281 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 325 (574)
.+++|+.+.+..+.-.... .+......++.|+.|+++++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~------~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDD------SLDALALKCPNLEELDLSGC 224 (482)
T ss_pred hCchhhHhhhcccccCChh------hHHHHHhhCchhheecccCc
Confidence 4678888888776432211 12334667888888888763
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.19 E-value=0.00021 Score=63.50 Aligned_cols=86 Identities=21% Similarity=0.246 Sum_probs=46.5
Q ss_pred CcCCCCCCeEECCCC--eecccCCccccCCCCCCeEeCCCCcceec-CCccccCCCCCCEEeCCCCcccccCc---cccc
Q 036593 426 LASLTSLRELRLGSN--KLTSSIPSSLWSLEYILEINLSSNSLNDS-LPSNVQKLKVLRVLDLSRNQLSGNIP---STIG 499 (574)
Q Consensus 426 ~~~~~~L~~L~l~~n--~~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~ 499 (574)
+..+|+|+.|.++.| .+.+.+..-...+++|+++++++|.+... ....+..+++|.+|++.+|..+.... ..|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 445666677777766 44444444444556677777777666432 12234556666677777666553211 1334
Q ss_pred CCCCCCEeeCCC
Q 036593 500 ALVDLETLSLAS 511 (574)
Q Consensus 500 ~~~~L~~L~l~~ 511 (574)
-+++|++|+-..
T Consensus 141 ll~~L~~LD~~d 152 (260)
T KOG2739|consen 141 LLPSLKYLDGCD 152 (260)
T ss_pred Hhhhhccccccc
Confidence 456665554433
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.04 E-value=3.8e-05 Score=79.48 Aligned_cols=133 Identities=20% Similarity=0.050 Sum_probs=73.2
Q ss_pred hcCCCCCCEEEccCCcCccC--CCccccCCCCCCEEEccCC-cccccC----CcCCCCCCCCceeeccccc-CcccCchh
Q 036593 86 LGKLGRLKFISFSFNKLSGS--IPTWIGVLSKLQIMSLRNN-NITGPI----PNSLFNLSKLEMLQASFNV-IDGNIPSG 157 (574)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~-~~~~~~~~ 157 (574)
...++.|+.+.+.++.-... .......+++|+.|+++++ ...... ......+++|+.++++.+. ++...-..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 34467777777777643222 2234556778888887763 111111 1123456777888887776 44333333
Q ss_pred cc-CCCCCCEEEccCCc-CCcCCC-ccccCCCCCCEEEccCCccc-c-cCchhhcccCCCcEEEcc
Q 036593 158 IG-NLSNLFDLDLRHNN-LQDQIP-TEIGNLQNLESLALGTNNLS-G-LIPPAIFNISTIRVLNLH 218 (574)
Q Consensus 158 l~-~l~~L~~L~l~~~~-~~~~~~-~~l~~l~~L~~L~l~~~~~~-~-~~~~~l~~~~~L~~L~l~ 218 (574)
++ .+++|++|.+..+. +++... .....++.|++|+++.+... + ........+++++.+.+.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 33 37788888877665 443322 23355677888888776542 1 122223345666655443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=3.1e-05 Score=68.88 Aligned_cols=100 Identities=24% Similarity=0.225 Sum_probs=73.4
Q ss_pred CCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccC-cccccCCCCCCEe
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNI-PSTIGALVDLETL 507 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L 507 (574)
+.+.+.|++.+|.+. +......++.|+.|.|+-|.|+...+ +..|++|+.|.|..|.|.+.. ...+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~--DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD--DISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCcc--HHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 457788899999885 33556678999999999999876544 788999999999999886432 2467889999999
Q ss_pred eCCCCcccccCC-----ccccCCcCCCeee
Q 036593 508 SLASNQFQGPIP-----ESVGSLISLESLD 532 (574)
Q Consensus 508 ~l~~n~~~~~~~-----~~l~~~~~L~~L~ 532 (574)
.|..|.--+..+ ..+.-+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999986544322 2345556666664
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.63 E-value=2.2e-05 Score=78.74 Aligned_cols=117 Identities=28% Similarity=0.294 Sum_probs=53.2
Q ss_pred ccCcCCCCCCeEECCCCeeccc----CCcccc----CCCCCCeEeCCCCcceec----CCccccCCCC-CCEEeCCCCcc
Q 036593 424 PCLASLTSLRELRLGSNKLTSS----IPSSLW----SLEYILEINLSSNSLNDS----LPSNVQKLKV-LRVLDLSRNQL 490 (574)
Q Consensus 424 ~~~~~~~~L~~L~l~~n~~~~~----~~~~~~----~~~~L~~L~L~~~~l~~~----~~~~~~~l~~-L~~L~l~~n~~ 490 (574)
..+.....++.++++.|.+... .+.++. ...++++|++++|.++.. ....+...+. +..+++.+|.+
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 3344466777777777766311 112222 244555666665555422 1112223333 44455555554
Q ss_pred cccCc----ccccCC-CCCCEeeCCCCcccccC----CccccCCcCCCeeeCCCCcccc
Q 036593 491 SGNIP----STIGAL-VDLETLSLASNQFQGPI----PESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 491 ~~~~~----~~~~~~-~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
.+... ..+..+ +.+++++++.|.++... ...+.+++.++.+.++.|++..
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 42211 122333 44555555555555422 2233444455555555555543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.58 E-value=0.0061 Score=31.96 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=13.0
Q ss_pred CCCeEeccCCccccccCCC
Q 036593 551 HLKQFNVSQNMLEGEIPVK 569 (574)
Q Consensus 551 ~L~~l~l~~n~~~~~~p~~ 569 (574)
+|+.||+++|+++ .||++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp TESEEEETSSEES-EEGTT
T ss_pred CccEEECCCCcCE-eCChh
Confidence 4677777777777 77766
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.87 E-value=0.00012 Score=73.62 Aligned_cols=88 Identities=39% Similarity=0.461 Sum_probs=44.8
Q ss_pred CCCCCeEECCCCeeccc----CCccccCCCC-CCeEeCCCCcceec----CCccccCC-CCCCEEeCCCCcccccCc---
Q 036593 429 LTSLRELRLGSNKLTSS----IPSSLWSLEY-ILEINLSSNSLNDS----LPSNVQKL-KVLRVLDLSRNQLSGNIP--- 495 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~----~~~~~~~~~~-L~~L~L~~~~l~~~----~~~~~~~l-~~L~~L~l~~n~~~~~~~--- 495 (574)
..+++.|.+.+|.++.. ...++...++ +.+|++.+|.+.+. ....+..+ ..+++++++.|.+.+...
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 45566666666655422 1122333344 55566666665433 12233333 455666666666653322
Q ss_pred -ccccCCCCCCEeeCCCCcccc
Q 036593 496 -STIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 496 -~~~~~~~~L~~L~l~~n~~~~ 516 (574)
..+..++.++++.+++|.++.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 334445666666666666554
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.0045 Score=52.93 Aligned_cols=84 Identities=17% Similarity=0.168 Sum_probs=47.6
Q ss_pred CCCeEeCCCCcceecCCccccCCCCCCEEeCCCCccc-ccCccccc-CCCCCCEeeCCCC-cccccCCccccCCcCCCee
Q 036593 455 YILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS-GNIPSTIG-ALVDLETLSLASN-QFQGPIPESVGSLISLESL 531 (574)
Q Consensus 455 ~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~-~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L 531 (574)
.++.++-+++.|.....+.+..++.++.|.+.+|.-- +-..+.++ -.++|+.|+|++| +|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3455566666665555555666666666666666421 11111111 2467777777777 4555555556666777777
Q ss_pred eCCCCcc
Q 036593 532 DLSGNNF 538 (574)
Q Consensus 532 ~l~~n~~ 538 (574)
.+.+=+.
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 7665443
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.008 Score=51.49 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=55.7
Q ss_pred CcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCccccc-Cchhhc-CCCCCCEEEccCC-cCccCCCccccCCCCCCE
Q 036593 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGH-LPNELG-KLGRLKFISFSFN-KLSGSIPTWIGVLSKLQI 118 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~ 118 (574)
-.++.++.+++.|..+-...+.+++.++.|.+.+|.-.+. -...++ -.++|+.|++++| +|++.--..+.++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 4577888888877767777778888888888887764431 111122 3577888888877 466666666777777777
Q ss_pred EEccCC
Q 036593 119 MSLRNN 124 (574)
Q Consensus 119 L~l~~~ 124 (574)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 777553
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.68 E-value=0.032 Score=29.20 Aligned_cols=11 Identities=45% Similarity=0.525 Sum_probs=4.8
Q ss_pred CcEEEccCCcc
Q 036593 68 LMSLDVTLNNF 78 (574)
Q Consensus 68 L~~L~L~~~~~ 78 (574)
|++|++++|.+
T Consensus 2 L~~Ldls~n~l 12 (22)
T PF00560_consen 2 LEYLDLSGNNL 12 (22)
T ss_dssp ESEEEETSSEE
T ss_pred ccEEECCCCcC
Confidence 34444444444
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.19 E-value=0.092 Score=25.40 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=5.6
Q ss_pred CCCeEeccCCcc
Q 036593 551 HLKQFNVSQNML 562 (574)
Q Consensus 551 ~L~~l~l~~n~~ 562 (574)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 556666666663
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.46 E-value=0.097 Score=28.00 Aligned_cols=13 Identities=54% Similarity=0.723 Sum_probs=4.6
Q ss_pred CCCEEeCCCCccc
Q 036593 479 VLRVLDLSRNQLS 491 (574)
Q Consensus 479 ~L~~L~l~~n~~~ 491 (574)
+|++|+|++|++.
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444433
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.36 E-value=0.01 Score=51.88 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=52.0
Q ss_pred hcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCC
Q 036593 86 LGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLF 165 (574)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 165 (574)
+..+...++||++.+++. .+-..|+.++.|..|+++.+.+. ..|..+.....++++++..|..+ ..|.++++.++++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 444555556666655544 33444555566666666666665 56666666666666666666554 5666666666777
Q ss_pred EEEccCCcCC
Q 036593 166 DLDLRHNNLQ 175 (574)
Q Consensus 166 ~L~l~~~~~~ 175 (574)
+++...+.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 6666665443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.62 E-value=0.019 Score=50.27 Aligned_cols=86 Identities=28% Similarity=0.312 Sum_probs=51.4
Q ss_pred cCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCe
Q 036593 475 QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQ 554 (574)
Q Consensus 475 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 554 (574)
......+.||++.|++. ..-.-|+-++.|..|+++.|++. ..|..+.....+..++...|..+ ..|-.+...|.++.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 34455566666666554 22233445566666666666666 56666666666666666666655 45666666666666
Q ss_pred EeccCCccc
Q 036593 555 FNVSQNMLE 563 (574)
Q Consensus 555 l~l~~n~~~ 563 (574)
++..+|++.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 666666643
No 81
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=87.34 E-value=3.9 Score=40.36 Aligned_cols=252 Identities=17% Similarity=0.131 Sum_probs=121.6
Q ss_pred CCcEEEccCCCCCCCCChhhhhhcc--ccceEEeccccccc---cCCccccCCCCCcEEECcCCCCc--------ccCCc
Q 036593 316 KLSYLVLDSNPLGGILPPLIGNFSA--SLQSFYAYECKLGG---SIPKEIGNLRGLILLTLDFNDLN--------GTIPT 382 (574)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~--------~~~~~ 382 (574)
.+.+++++.+...+-.+........ -++.++.+...+.. .-+...+.-++++..+++.|... +....
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 4566666666655544433322221 22233333222221 12223455567777777766433 12223
Q ss_pred CccccCCCCeEeccCCcccccCCCCCc------------eEEccCCeeeec--CCccCcCCCCCCeEECCCCeecccCCc
Q 036593 383 SVGTLQQLQGLSLEDNNLEGSIPYDLC------------HLELNGNKLSGH--IPPCLASLTSLRELRLGSNKLTSSIPS 448 (574)
Q Consensus 383 ~~~~~~~L~~L~l~~~~~~~~~~~~l~------------~l~l~~~~l~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~ 448 (574)
.|+.-+++ +|++..+....+-+.++- ++++..|...+. ...+. +=.++++|...+|...+....
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci-~g~R~q~l~~rdnnldgeg~~ 372 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACI-FGQRVQVLLQRDNNLDGEGGA 372 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccc-cceeeeEeecccccccccccc
Confidence 34444666 777777665433222111 444444443321 11111 123578888888776655332
Q ss_pred --cccCCCCCCeEeCCCCcc---eecC----Ccc--ccCCCCCCEEeCCCCcccccC---cccccCCCCCCEeeCCCCcc
Q 036593 449 --SLWSLEYILEINLSSNSL---NDSL----PSN--VQKLKVLRVLDLSRNQLSGNI---PSTIGALVDLETLSLASNQF 514 (574)
Q Consensus 449 --~~~~~~~L~~L~L~~~~l---~~~~----~~~--~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l~~n~~ 514 (574)
.....++.+.+++.+-.- .... +.. -....-+..+.++.|...... ...+.+-+.+..|++++|..
T Consensus 373 vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 373 VGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGM 452 (553)
T ss_pred ccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCc
Confidence 344456677777644322 1110 000 011223556667766655221 12234456788888888876
Q ss_pred cc----cCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCCCCC
Q 036593 515 QG----PIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSF 572 (574)
Q Consensus 515 ~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~~~~ 572 (574)
.. .+|.+++....++.+..+.|..+. .++.....=..+++.+...+...|.--.|
T Consensus 453 gd~gap~lpkalq~n~rlr~ipds~n~p~~---~gl~p~~~~~p~n~~rs~~~~p~Pv~daf 511 (553)
T KOG4242|consen 453 GDGGAPPLPKALQSNCRLRPIPDSLNLPED---PGLGPRNEERPLNLQRSPVLKPRPVLDAF 511 (553)
T ss_pred ccCCCCcCccccCCCCccCCCCCCCCCccc---cccchhhhhcccccccCCcccCCCccccC
Confidence 64 345566666677777777666553 22222111222333366666666654444
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.30 E-value=0.63 Score=25.33 Aligned_cols=13 Identities=77% Similarity=0.833 Sum_probs=5.7
Q ss_pred CCCEEeCCCCccc
Q 036593 479 VLRVLDLSRNQLS 491 (574)
Q Consensus 479 ~L~~L~l~~n~~~ 491 (574)
+|+.|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.30 E-value=0.63 Score=25.33 Aligned_cols=13 Identities=77% Similarity=0.833 Sum_probs=5.7
Q ss_pred CCCEEeCCCCccc
Q 036593 479 VLRVLDLSRNQLS 491 (574)
Q Consensus 479 ~L~~L~l~~n~~~ 491 (574)
+|+.|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 84
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=78.68 E-value=1 Score=28.27 Aligned_cols=20 Identities=30% Similarity=0.697 Sum_probs=13.8
Q ss_pred hcccccCC--CCccceeeeeec
Q 036593 19 LLYLLKTT--NMRLSWVGISCD 38 (574)
Q Consensus 19 ~~~~~~~~--~~~~~~~~~~~~ 38 (574)
.+..|... .++|.|.|+.|+
T Consensus 22 ~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 22 VLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp CCTT--TT--S-CCCSTTEEE-
T ss_pred ccccCCCcCCCCCeeeccEEeC
Confidence 47789986 799999999995
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.97 E-value=3.3 Score=22.65 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=8.5
Q ss_pred CCCCeEeccCCcccc
Q 036593 550 SHLKQFNVSQNMLEG 564 (574)
Q Consensus 550 ~~L~~l~l~~n~~~~ 564 (574)
.+|+.|++++|+|..
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 356666666666543
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.31 E-value=5.6 Score=21.71 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=6.7
Q ss_pred CCCEeeCCCCccc
Q 036593 503 DLETLSLASNQFQ 515 (574)
Q Consensus 503 ~L~~L~l~~n~~~ 515 (574)
+|++|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4455555555554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.00 E-value=3.4 Score=23.01 Aligned_cols=13 Identities=62% Similarity=0.787 Sum_probs=6.1
Q ss_pred CCCEEeCCCCccc
Q 036593 479 VLRVLDLSRNQLS 491 (574)
Q Consensus 479 ~L~~L~l~~n~~~ 491 (574)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4444444444443
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=53.62 E-value=9.7 Score=20.58 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=5.5
Q ss_pred CCCCEeeCCCC
Q 036593 502 VDLETLSLASN 512 (574)
Q Consensus 502 ~~L~~L~l~~n 512 (574)
++|+.|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555555
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=51.19 E-value=78 Score=31.82 Aligned_cols=133 Identities=19% Similarity=0.106 Sum_probs=63.6
Q ss_pred cCCCCCCEEEccCCcCcc------CCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhc--
Q 036593 87 GKLGRLKFISFSFNKLSG------SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-- 158 (574)
Q Consensus 87 ~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-- 158 (574)
+....++.+++.-|-+.- .++......+.+++++++.+.+.+..+-.+..-. --+.+..|..++.....+
T Consensus 132 ~~s~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~ 209 (553)
T KOG4242|consen 132 SPSAPLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLI 209 (553)
T ss_pred cccccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhh
Confidence 344456666666554321 1122223356678888888877655554433211 014455554432111111
Q ss_pred -cCCCCCCEEEccCCcCCcCCCccccC---CCCCCEEEccCCcccc---cCchhhcccCCCcEEEcccCc
Q 036593 159 -GNLSNLFDLDLRHNNLQDQIPTEIGN---LQNLESLALGTNNLSG---LIPPAIFNISTIRVLNLHSNQ 221 (574)
Q Consensus 159 -~~l~~L~~L~l~~~~~~~~~~~~l~~---l~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~ 221 (574)
..=..+.+++++.+...+..+..+.. -..++.++.+...+.. ..+......+++...+++.+.
T Consensus 210 qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 210 QSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred hhccccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCC
Confidence 01135777888877666554443322 2345666666554431 111222334566666665543
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.28 E-value=5.8 Score=40.12 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=10.1
Q ss_pred cCCCCCCeEECCCCeec
Q 036593 427 ASLTSLRELRLGSNKLT 443 (574)
Q Consensus 427 ~~~~~L~~L~l~~n~~~ 443 (574)
.+.+.+..++|++|++-
T Consensus 215 ~n~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLY 231 (585)
T ss_pred cCCcceeeeecccchhh
Confidence 34556666666666653
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.47 E-value=11 Score=38.35 Aligned_cols=65 Identities=32% Similarity=0.312 Sum_probs=34.8
Q ss_pred CCCCCCeEeCCCCcceec--CCccccCCCCCCEEeCCCCcccccCcccccC--CCCCCEeeCCCCcccc
Q 036593 452 SLEYILEINLSSNSLNDS--LPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA--LVDLETLSLASNQFQG 516 (574)
Q Consensus 452 ~~~~L~~L~L~~~~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~~~L~~L~l~~n~~~~ 516 (574)
+.+.+..++|++|++... ....-...|.|+.|+|++|...-.....+.. ...|++|-+.||++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 456667777888876443 1112234567777777777322111111211 2457777777776654
No 92
>PF08186 Wound_ind: Wound-inducible basic protein family; InterPro: IPR012643 This family consists of the wound-inducible basic proteins from plants. The metabolic activities of plants are dramatically altered upon mechanical injury or pathogen attack. A large number of proteins accumulates at wound or infection sites, such as the wound-inducible basic proteins. These proteins are small, 47 amino acids in length, has no signal peptides and are hydrophilic and basic [].
Probab=25.16 E-value=38 Score=20.97 Aligned_cols=14 Identities=43% Similarity=0.702 Sum_probs=12.2
Q ss_pred ceecchhhHHHHHH
Q 036593 2 MLISFTSNLFQSHL 15 (574)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (574)
|+||+.++.|+.-.
T Consensus 1 miyd~~s~lfrsfl 14 (46)
T PF08186_consen 1 MIYDVNSHLFRSFL 14 (46)
T ss_pred CceecccHHHHHHH
Confidence 89999999998765
Done!