Query 036593
Match_columns 574
No_of_seqs 276 out of 3417
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 05:17:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-63 7.8E-68 537.5 47.3 549 19-573 29-727 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.7E-55 5.7E-60 476.1 42.6 511 41-564 125-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.5E-53 1.5E-57 453.6 49.5 523 41-565 24-624 (680)
4 3t6q_A CD180 antigen; protein- 100.0 4.3E-53 1.5E-57 447.8 41.6 506 46-567 16-564 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 6.2E-52 2.1E-56 444.8 46.7 492 41-542 48-625 (680)
6 3t6q_A CD180 antigen; protein- 100.0 7.2E-51 2.5E-55 430.8 42.5 488 41-540 32-561 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 4.5E-51 1.5E-55 432.3 40.7 507 42-567 32-562 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.5E-49 8.7E-54 418.9 37.0 482 40-541 54-560 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-49 8.1E-54 432.4 34.8 519 28-567 12-564 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 3.4E-48 1.1E-52 407.7 37.4 492 42-569 28-537 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-47 3.7E-52 419.4 38.5 505 45-569 7-545 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-47 1.8E-51 396.4 31.2 495 29-567 3-514 (549)
13 4eco_A Uncharacterized protein 100.0 4E-47 1.4E-51 401.2 28.8 484 20-562 57-631 (636)
14 4ecn_A Leucine-rich repeat pro 100.0 4.9E-45 1.7E-49 390.8 31.1 485 22-560 285-861 (876)
15 2z63_A TOLL-like receptor 4, v 100.0 4.3E-44 1.5E-48 376.4 36.4 486 45-568 10-512 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-44 8.6E-49 376.2 30.1 471 41-543 25-514 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 5.5E-44 1.9E-48 370.7 27.2 459 45-539 3-481 (520)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-41 5.5E-46 361.9 38.7 499 47-564 36-581 (635)
19 4g8a_A TOLL-like receptor 4; l 100.0 9E-40 3.1E-44 348.4 40.4 486 70-569 35-561 (635)
20 4ecn_A Leucine-rich repeat pro 100.0 6.3E-41 2.1E-45 359.1 30.8 437 66-565 323-842 (876)
21 4eco_A Uncharacterized protein 100.0 4.6E-42 1.6E-46 362.6 20.0 435 66-564 81-601 (636)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.4E-41 1.8E-45 351.0 27.4 460 44-539 33-510 (562)
23 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-40 7.9E-45 343.5 26.9 459 69-567 3-485 (520)
24 3v47_A TOLL-like receptor 5B a 100.0 8.2E-38 2.8E-42 318.9 33.6 393 93-567 13-412 (455)
25 3v47_A TOLL-like receptor 5B a 100.0 3.6E-37 1.2E-41 314.2 31.9 386 46-517 14-410 (455)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.7E-38 3E-42 326.7 26.3 460 64-567 29-514 (562)
27 1jl5_A Outer protein YOPM; leu 100.0 2.7E-35 9.3E-40 297.2 28.1 418 42-568 11-434 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 1.5E-35 5.1E-40 299.1 25.5 390 65-569 10-417 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-34 7.6E-39 290.8 29.3 366 76-569 28-393 (457)
30 1o6v_A Internalin A; bacterial 100.0 7.9E-34 2.7E-38 289.5 30.7 347 111-540 43-389 (466)
31 1o6v_A Internalin A; bacterial 100.0 2E-33 6.8E-38 286.5 33.0 347 63-516 43-389 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-33 3.7E-38 285.8 28.6 357 61-521 37-393 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 2.6E-33 8.9E-38 287.1 25.8 320 189-539 14-333 (477)
34 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-33 3.9E-38 272.0 21.5 274 19-296 23-304 (313)
35 2id5_A Lingo-1, leucine rich r 100.0 9.5E-33 3.2E-37 282.9 28.4 320 117-491 14-333 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 1.1E-31 3.9E-36 267.3 30.5 350 20-468 3-353 (390)
37 3o6n_A APL1; leucine-rich repe 100.0 9.9E-32 3.4E-36 267.8 29.5 307 211-564 46-353 (390)
38 4fmz_A Internalin; leucine ric 100.0 2.9E-31 9.8E-36 260.3 27.5 307 158-563 40-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 4.5E-31 1.6E-35 277.2 30.5 156 64-222 49-204 (597)
40 4fmz_A Internalin; leucine ric 100.0 8.2E-31 2.8E-35 257.0 27.7 307 134-539 40-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 1.1E-30 3.9E-35 274.2 29.4 309 186-564 51-359 (597)
42 2ft3_A Biglycan; proteoglycan, 100.0 3.3E-29 1.1E-33 243.6 26.9 288 211-561 34-331 (332)
43 1z7x_W Ribonuclease inhibitor; 100.0 3E-34 1E-38 293.2 -9.7 388 138-565 3-442 (461)
44 1xku_A Decorin; proteoglycan, 100.0 8.1E-29 2.8E-33 240.7 27.5 290 210-561 31-330 (330)
45 1z7x_W Ribonuclease inhibitor; 100.0 1E-33 3.4E-38 289.3 -12.1 392 90-540 3-441 (461)
46 1xku_A Decorin; proteoglycan, 100.0 4.7E-28 1.6E-32 235.4 28.3 296 43-374 32-329 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 1.6E-28 5.6E-33 238.7 24.0 293 43-398 34-330 (332)
48 1ogq_A PGIP-2, polygalacturona 100.0 2E-28 7E-33 235.3 19.7 254 283-564 50-306 (313)
49 3ogk_B Coronatine-insensitive 100.0 7.2E-31 2.5E-35 276.9 -6.4 455 27-561 39-549 (592)
50 4fcg_A Uncharacterized protein 99.9 2.4E-27 8.3E-32 229.1 18.0 245 20-294 47-312 (328)
51 2z80_A TOLL-like receptor 2, v 99.9 1E-27 3.6E-32 235.2 15.3 287 22-331 22-317 (353)
52 3ogk_B Coronatine-insensitive 99.9 5.2E-30 1.8E-34 270.4 -5.4 425 40-536 71-548 (592)
53 2z66_A Variable lymphocyte rec 99.9 5.5E-26 1.9E-30 218.3 21.4 260 259-568 28-292 (306)
54 3zyi_A Leucine-rich repeat-con 99.9 2.9E-25 1E-29 225.2 25.3 250 43-298 55-305 (452)
55 3zyj_A Leucine-rich repeat-con 99.9 3.6E-25 1.2E-29 223.7 25.0 250 43-298 44-294 (440)
56 2z66_A Variable lymphocyte rec 99.9 1.5E-25 5E-30 215.4 20.9 247 46-297 11-262 (306)
57 2p1m_B Transport inhibitor res 99.9 1.3E-29 4.3E-34 267.6 -8.4 246 69-325 46-324 (594)
58 1ozn_A Reticulon 4 receptor; N 99.9 3.9E-25 1.3E-29 210.0 21.9 206 315-539 32-238 (285)
59 3zyi_A Leucine-rich repeat-con 99.9 1.4E-24 4.9E-29 220.1 25.9 246 261-562 56-302 (452)
60 3zyj_A Leucine-rich repeat-con 99.9 1.6E-24 5.5E-29 219.0 25.1 248 261-539 45-292 (440)
61 2p1m_B Transport inhibitor res 99.9 7.1E-29 2.4E-33 261.9 -7.8 457 26-536 31-541 (594)
62 2z80_A TOLL-like receptor 2, v 99.9 1.4E-25 4.6E-30 220.1 15.6 258 41-298 51-316 (353)
63 4fcg_A Uncharacterized protein 99.9 5.5E-25 1.9E-29 212.6 19.1 237 65-330 80-316 (328)
64 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-24 8.4E-29 204.5 21.9 225 45-297 14-239 (285)
65 1wwl_A Monocyte differentiatio 99.9 2.6E-26 8.8E-31 220.8 5.0 247 43-329 44-310 (312)
66 3g06_A SSPH2 (leucine-rich rep 99.9 5.8E-23 2E-27 213.3 28.2 260 236-568 41-302 (622)
67 2o6q_A Variable lymphocyte rec 99.9 1.5E-23 5.2E-28 197.1 21.4 215 27-246 2-216 (270)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-25 5.6E-30 215.7 7.7 239 233-536 32-272 (317)
69 1wwl_A Monocyte differentiatio 99.9 3.1E-25 1.1E-29 213.3 7.9 199 362-565 93-311 (312)
70 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-24 5.2E-29 208.9 10.7 239 43-328 11-250 (317)
71 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-22 4.6E-27 210.6 25.5 267 163-525 41-307 (622)
72 2z62_A TOLL-like receptor 4, v 99.9 7.2E-23 2.5E-27 193.4 21.4 209 341-568 29-242 (276)
73 2o6q_A Variable lymphocyte rec 99.9 1.9E-22 6.7E-27 189.5 23.1 203 316-540 17-219 (270)
74 2z62_A TOLL-like receptor 4, v 99.9 1.6E-22 5.4E-27 191.0 21.3 223 46-297 11-238 (276)
75 3oja_A Leucine-rich immune mol 99.9 3.6E-23 1.2E-27 210.8 15.1 219 312-563 31-250 (487)
76 3oja_A Leucine-rich immune mol 99.9 1.4E-23 4.8E-28 213.8 11.2 239 279-558 30-270 (487)
77 3rfs_A Internalin B, repeat mo 99.9 1E-22 3.6E-27 191.4 16.2 183 360-569 59-241 (272)
78 1p9a_G Platelet glycoprotein I 99.9 5E-22 1.7E-26 188.1 20.8 203 311-539 6-208 (290)
79 3rfs_A Internalin B, repeat mo 99.9 2.6E-21 9E-26 181.8 19.4 187 360-568 37-223 (272)
80 2ca6_A RAN GTPase-activating p 99.9 2.9E-24 9.9E-29 213.4 -3.6 136 430-565 159-318 (386)
81 3m19_A Variable lymphocyte rec 99.9 5.4E-21 1.9E-25 177.5 18.1 191 28-224 3-193 (251)
82 3m19_A Variable lymphocyte rec 99.9 7.6E-21 2.6E-25 176.5 18.9 181 364-565 14-194 (251)
83 1p9a_G Platelet glycoprotein I 99.9 1.6E-20 5.6E-25 177.7 20.8 197 41-245 9-205 (290)
84 4glp_A Monocyte differentiatio 99.9 2.8E-21 9.7E-26 185.5 13.8 201 341-564 92-308 (310)
85 3goz_A Leucine-rich repeat-con 99.9 9.1E-23 3.1E-27 200.4 3.1 261 241-540 4-298 (362)
86 2ast_B S-phase kinase-associat 99.9 1.2E-22 4.1E-27 197.9 3.9 238 25-269 32-282 (336)
87 2xwt_C Thyrotropin receptor; s 99.8 1.5E-20 5E-25 173.3 16.5 203 57-269 25-236 (239)
88 3goz_A Leucine-rich repeat-con 99.8 4.6E-22 1.6E-26 195.4 6.7 267 47-335 3-304 (362)
89 1h6u_A Internalin H; cell adhe 99.8 1.1E-20 3.8E-25 180.8 15.7 194 311-539 37-230 (308)
90 2xwt_C Thyrotropin receptor; s 99.8 1E-20 3.5E-25 174.4 14.4 197 341-561 32-237 (239)
91 1h6u_A Internalin H; cell adhe 99.8 2.9E-20 9.9E-25 177.9 15.9 195 255-516 37-231 (308)
92 2ast_B S-phase kinase-associat 99.8 2.7E-21 9.1E-26 188.4 8.5 224 67-325 48-282 (336)
93 4glp_A Monocyte differentiatio 99.8 3.2E-20 1.1E-24 178.2 14.4 183 66-248 64-264 (310)
94 2ca6_A RAN GTPase-activating p 99.8 8.9E-22 3.1E-26 195.4 1.2 249 58-331 24-319 (386)
95 2o6s_A Variable lymphocyte rec 99.8 1.8E-19 6.3E-24 162.1 13.9 175 367-569 10-184 (208)
96 2o6s_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 157.1 15.0 175 363-566 27-201 (208)
97 2v9t_B SLIT homolog 2 protein 99.8 2.5E-18 8.7E-23 155.5 15.8 133 430-562 32-164 (220)
98 4ay9_X Follicle-stimulating ho 99.8 2.8E-18 9.6E-23 167.4 17.1 238 46-291 13-254 (350)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 3.9E-18 1.3E-22 154.3 16.4 136 431-566 33-169 (220)
100 4ay9_X Follicle-stimulating ho 99.8 4.8E-18 1.6E-22 165.8 16.8 238 69-324 12-255 (350)
101 1h6t_A Internalin B; cell adhe 99.8 2.8E-18 9.4E-23 162.6 14.3 168 341-540 47-214 (291)
102 3e6j_A Variable lymphocyte rec 99.8 7.4E-18 2.5E-22 153.6 16.2 136 430-566 40-175 (229)
103 2xot_A Amphoterin-induced prot 99.8 4.1E-18 1.4E-22 167.0 14.3 176 367-563 21-202 (361)
104 3e6j_A Variable lymphocyte rec 99.8 2.1E-17 7.2E-22 150.6 17.7 163 22-200 11-173 (229)
105 4ezg_A Putative uncharacterize 99.8 3.4E-18 1.2E-22 152.1 12.0 155 384-564 40-195 (197)
106 3cvr_A Invasion plasmid antige 99.7 2.6E-17 8.9E-22 168.7 18.0 107 429-548 139-252 (571)
107 2v9t_B SLIT homolog 2 protein 99.7 3.4E-17 1.2E-21 148.1 16.7 152 45-199 14-165 (220)
108 4fs7_A Uncharacterized protein 99.7 3.1E-16 1.1E-20 155.6 24.9 102 449-555 292-393 (394)
109 4fs7_A Uncharacterized protein 99.7 2.4E-16 8.2E-21 156.4 23.1 335 126-531 59-393 (394)
110 1h6t_A Internalin B; cell adhe 99.7 1.5E-17 5.2E-22 157.5 13.7 173 311-516 42-214 (291)
111 3cvr_A Invasion plasmid antige 99.7 2.3E-17 8E-22 169.1 14.8 206 18-254 31-249 (571)
112 1m9s_A Internalin B; cell inva 99.7 4E-17 1.4E-21 169.3 15.7 169 341-541 44-212 (605)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-16 4E-21 144.6 16.1 151 46-199 15-166 (220)
114 2xot_A Amphoterin-induced prot 99.7 6.2E-17 2.1E-21 158.5 15.4 176 45-223 21-202 (361)
115 1xeu_A Internalin C; cellular 99.7 1.3E-17 4.4E-22 155.4 9.4 168 341-541 20-187 (263)
116 4ezg_A Putative uncharacterize 99.7 3.3E-17 1.1E-21 145.7 11.4 154 361-540 41-195 (197)
117 1m9s_A Internalin B; cell inva 99.7 1.3E-16 4.6E-21 165.4 17.0 186 311-529 39-224 (605)
118 3sb4_A Hypothetical leucine ri 99.7 3.6E-17 1.2E-21 158.2 11.3 102 453-556 225-327 (329)
119 4fdw_A Leucine rich hypothetic 99.7 2.1E-15 7.1E-20 148.7 23.7 263 235-561 113-381 (401)
120 3sb4_A Hypothetical leucine ri 99.7 2.7E-17 9.1E-22 159.1 9.9 286 64-395 23-328 (329)
121 4fdw_A Leucine rich hypothetic 99.7 5.1E-15 1.7E-19 145.9 23.8 250 63-334 110-364 (401)
122 1xeu_A Internalin C; cellular 99.7 1.4E-16 4.8E-21 148.3 9.5 170 314-517 18-187 (263)
123 1w8a_A SLIT protein; signaling 99.7 1E-15 3.5E-20 135.2 13.5 129 409-540 11-140 (192)
124 2ell_A Acidic leucine-rich nuc 99.6 2.3E-16 7.9E-21 136.4 7.4 131 430-562 24-159 (168)
125 4gt6_A Cell surface protein; l 99.6 6.6E-14 2.2E-18 138.8 25.2 90 127-218 52-145 (394)
126 2je0_A Acidic leucine-rich nuc 99.6 8.8E-16 3E-20 129.8 9.2 129 429-559 16-149 (149)
127 2ell_A Acidic leucine-rich nuc 99.6 6.8E-16 2.3E-20 133.4 8.6 141 398-540 16-161 (168)
128 4gt6_A Cell surface protein; l 99.6 1.8E-13 6E-18 135.7 27.2 136 421-563 256-391 (394)
129 1dce_A Protein (RAB geranylger 99.6 4.9E-18 1.7E-22 175.2 -7.8 163 379-557 400-567 (567)
130 2o6r_A Variable lymphocyte rec 99.6 8.3E-15 2.8E-19 127.7 13.2 128 409-539 10-137 (177)
131 1w8a_A SLIT protein; signaling 99.6 8.9E-15 3E-19 129.2 13.5 155 391-547 11-170 (192)
132 2je0_A Acidic leucine-rich nuc 99.6 2.6E-15 8.8E-20 126.9 9.0 126 408-535 19-149 (149)
133 1dce_A Protein (RAB geranylger 99.6 1.1E-17 3.8E-22 172.5 -7.9 217 280-533 346-567 (567)
134 2wfh_A SLIT homolog 2 protein 99.6 2E-14 6.7E-19 126.8 13.8 127 409-539 13-139 (193)
135 1a9n_A U2A', U2A'; complex (nu 99.6 2.5E-15 8.4E-20 130.9 7.2 136 425-565 14-155 (176)
136 4b8c_D Glucose-repressible alc 99.6 6.9E-16 2.4E-20 164.3 4.1 187 364-569 173-360 (727)
137 4b8c_D Glucose-repressible alc 99.6 1E-15 3.4E-20 163.1 5.3 190 355-572 215-413 (727)
138 2wfh_A SLIT homolog 2 protein 99.6 3.8E-14 1.3E-18 125.0 13.8 125 391-516 13-140 (193)
139 2o6r_A Variable lymphocyte rec 99.5 7.7E-14 2.6E-18 121.6 14.0 133 432-567 9-141 (177)
140 1a9n_A U2A', U2A'; complex (nu 99.5 3E-14 1E-18 124.0 9.6 135 384-540 15-154 (176)
141 4h09_A Hypothetical leucine ri 99.4 4E-11 1.4E-15 118.3 25.9 81 158-244 42-122 (379)
142 4h09_A Hypothetical leucine ri 99.4 7.5E-11 2.6E-15 116.3 27.5 317 132-526 40-356 (379)
143 1ds9_A Outer arm dynein; leuci 99.4 1.3E-15 4.6E-20 135.4 -8.1 162 384-564 14-186 (198)
144 1ds9_A Outer arm dynein; leuci 99.4 4.6E-15 1.6E-19 131.9 -6.1 146 66-216 18-180 (198)
145 3g39_A Variable lymphocyte rec 99.4 2.8E-12 9.5E-17 110.5 11.1 107 431-540 10-116 (170)
146 3un9_A NLR family member X1; l 99.3 1.3E-14 4.4E-19 141.6 -5.5 183 364-563 72-283 (372)
147 3g39_A Variable lymphocyte rec 99.3 4.9E-12 1.7E-16 108.9 11.3 107 408-517 11-117 (170)
148 2r9u_A Variable lymphocyte rec 99.3 7.4E-12 2.5E-16 108.1 11.2 106 432-540 14-119 (174)
149 2r9u_A Variable lymphocyte rec 99.3 1.1E-11 3.6E-16 107.1 11.4 105 409-516 15-119 (174)
150 3un9_A NLR family member X1; l 99.3 9.6E-14 3.3E-18 135.5 -3.7 164 387-564 71-253 (372)
151 2ifg_A High affinity nerve gro 99.1 3.6E-10 1.2E-14 109.9 10.0 102 412-516 14-117 (347)
152 2ifg_A High affinity nerve gro 99.0 6.9E-10 2.4E-14 107.9 10.8 105 433-540 11-117 (347)
153 2ra8_A Uncharacterized protein 98.9 2.9E-10 9.9E-15 109.8 2.5 131 429-561 192-341 (362)
154 2ra8_A Uncharacterized protein 98.8 3.5E-09 1.2E-13 102.3 6.3 82 86-170 135-227 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 3.2E-09 1.1E-13 92.5 1.0 115 425-539 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 2.6E-09 8.9E-14 93.0 0.3 119 446-564 28-165 (185)
157 3e4g_A ATP synthase subunit S, 98.6 8.4E-09 2.9E-13 87.0 0.4 85 453-537 60-150 (176)
158 3e4g_A ATP synthase subunit S, 98.5 1.7E-08 5.9E-13 85.2 -0.3 84 430-513 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 2.7E-07 9.2E-12 84.2 0.9 80 475-556 167-257 (267)
160 3rw6_A Nuclear RNA export fact 98.2 3.4E-07 1.2E-11 83.5 0.9 81 451-532 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 6.2E-06 2.1E-10 71.0 2.2 111 427-537 38-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 7.6E-06 2.6E-10 70.4 1.3 116 447-562 34-169 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0048 1.6E-07 49.4 6.4 58 481-540 11-69 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.008 2.7E-07 48.0 6.2 37 479-515 32-68 (130)
165 2lz0_A Uncharacterized protein 86.8 1.4 4.8E-05 32.8 5.8 45 467-512 9-53 (100)
166 2lz0_A Uncharacterized protein 80.9 3 0.0001 31.0 5.4 45 442-487 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-63 Score=537.53 Aligned_cols=549 Identities=31% Similarity=0.493 Sum_probs=448.9
Q ss_pred hcccccCCCCccceeeeeecCCCCcEEEEEcCCCCCccc---cC-----------------------CCccCCCCCcEEE
Q 036593 19 LLYLLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGT---IP-----------------------PHLGNLSFLMSLD 72 (574)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~-----------------------~~~~~~~~L~~L~ 72 (574)
.+++|..+.++|.|.|+.|+ .++|++|+++++++.+. ++ ..+..+++|++|+
T Consensus 29 ~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~ 106 (768)
T 3rgz_A 29 LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLD 106 (768)
T ss_dssp SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEE
T ss_pred cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEE
Confidence 57889988899999999998 48999999999888765 32 5788889999999
Q ss_pred ccCCcccccCch--hhcCCCCCCEEEccCCcCccCCCccc-cCCCCCCEEEccCCcccccCCc-----------------
Q 036593 73 VTLNNFYGHLPN--ELGKLGRLKFISFSFNKLSGSIPTWI-GVLSKLQIMSLRNNNITGPIPN----------------- 132 (574)
Q Consensus 73 L~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~----------------- 132 (574)
|++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+.
T Consensus 107 Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls 186 (768)
T 3rgz_A 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186 (768)
T ss_dssp CCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECC
T ss_pred CCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECC
Confidence 999999887877 89999999999999998876666654 5666666666666665433221
Q ss_pred --------CCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCch
Q 036593 133 --------SLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPP 204 (574)
Q Consensus 133 --------~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 204 (574)
.+..+++|++|++++|.+.+..|. ++++++|++|++++|.+....+..+..+++|++|++++|.+.+..+.
T Consensus 187 ~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 265 (768)
T 3rgz_A 187 GNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265 (768)
T ss_dssp SSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC
T ss_pred CCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc
Confidence 125678888888888888866666 88999999999999998877788889999999999999988766555
Q ss_pred hhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCC-ccCCC
Q 036593 205 AIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNT-FGNLR 283 (574)
Q Consensus 205 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~ 283 (574)
. .+++|++|++++|.+.+.+|..++..+++|++|++++|.+....+..+..+++|++|++++|.+.+..|.. +..++
T Consensus 266 ~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 266 L--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp C--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred c--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence 3 77888888888888887888777755688888888888888777778888888888888888887555544 77788
Q ss_pred cCceEEccCCcccccCCCC-ccc----------------cccccccC--CCCCcEEEccCCCCCCCCChhhhhhccccce
Q 036593 284 HLNVLSIRTNNLTTESSSA-DQW----------------SFLSSLTN--CRKLSYLVLDSNPLGGILPPLIGNFSASLQS 344 (574)
Q Consensus 284 ~L~~L~l~~~~~~~~~~~~-~~~----------------~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 344 (574)
+|++|++++|.+....... ... ..+..+.. +++|++|++++|.+++..+..+..+. +++.
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~ 422 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVS 422 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCE
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCE
Confidence 8888888887765321111 000 01112222 56778888888877777777776655 8888
Q ss_pred EEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCC------CCCceEEccCCee
Q 036593 345 FYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP------YDLCHLELNGNKL 418 (574)
Q Consensus 345 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------~~l~~l~l~~~~l 418 (574)
|++++|.+....|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++.+| ..+++|++++|.+
T Consensus 423 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc
Confidence 8888888888888888888888888888888888888888888999999999998887666 3577899999999
Q ss_pred eecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCc--------------------------
Q 036593 419 SGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPS-------------------------- 472 (574)
Q Consensus 419 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-------------------------- 472 (574)
++.+|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+.+|.
T Consensus 503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 888888888899999999999999888888898999999999999988755443
Q ss_pred --------------------------------------------cccCCCCCCEEeCCCCcccccCcccccCCCCCCEee
Q 036593 473 --------------------------------------------NVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLS 508 (574)
Q Consensus 473 --------------------------------------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 508 (574)
.+..+++|+.|++++|++++.+|..++++++|+.|+
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 662 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence 234467899999999999999999999999999999
Q ss_pred CCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCCCCCC
Q 036593 509 LASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFK 573 (574)
Q Consensus 509 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~~~~~ 573 (574)
|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|+++|.||+++.|.
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 727 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999875
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-55 Score=476.10 Aligned_cols=511 Identities=33% Similarity=0.485 Sum_probs=381.4
Q ss_pred CCcEEEEEcCCCCCccccCCCc-cCCCCCcEEEccCCcccccCchh---hcCCCCCCEEEccCCcCccCCCccccCCCCC
Q 036593 41 HQRVKALNLSGMGLGGTIPPHL-GNLSFLMSLDVTLNNFYGHLPNE---LGKLGRLKFISFSFNKLSGSIPTWIGVLSKL 116 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 116 (574)
..++++|+++++.+.+.+|..+ .++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+ +..+++|
T Consensus 125 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L 202 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNL 202 (768)
T ss_dssp CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTC
T ss_pred CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcC
Confidence 4677888888887776666554 67777788887777776665554 5666666666666666554333 2555666
Q ss_pred CEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCC---------------------
Q 036593 117 QIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQ--------------------- 175 (574)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--------------------- 175 (574)
++|++++|.+.+..|. +.++++|++|++++|.+.+..|..+.++++|++|++++|.+.
T Consensus 203 ~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 281 (768)
T ss_dssp CEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEE
T ss_pred CEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCcc
Confidence 6666666655543443 555666666666666555555555555555555555555444
Q ss_pred -cCCCccccCC-CCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCc
Q 036593 176 -DQIPTEIGNL-QNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPD 253 (574)
Q Consensus 176 -~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 253 (574)
...+..+... ++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|......+++|++|++++|.+....+.
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence 3344444333 56666666666665555666666666666666666665555555333566666666666666555555
Q ss_pred CccCCC-CccEEeCCCCceeecCCCCccC--CCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCC
Q 036593 254 SLTNAS-KLIGLDLGSNSFSGHIPNTFGN--LRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330 (574)
Q Consensus 254 ~~~~~~-~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 330 (574)
.+..++ +|++|++++|.+.+..+..+.. +++|++|++++|.+... .+..+..+++|++|++++|.+++.
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--------~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK--------IPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE--------CCGGGGGCTTCCEEECCSSEEESC
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc--------cCHHHhcCCCCCEEECcCCcccCc
Confidence 555554 6666666666666555555544 56666677766666543 344588899999999999999988
Q ss_pred CChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCC----
Q 036593 331 LPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY---- 406 (574)
Q Consensus 331 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---- 406 (574)
.+..+..+. +++.|++.+|.+....|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.+|.
T Consensus 434 ~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 434 IPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 888887776 899999999999988999999999999999999999988899999999999999999999987773
Q ss_pred --CCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCcc-----------------------------------
Q 036593 407 --DLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSS----------------------------------- 449 (574)
Q Consensus 407 --~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----------------------------------- 449 (574)
.+++|++++|.+++.+|..+..+++|+.|++++|++.+..|..
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 5789999999999999999999999999999999987665543
Q ss_pred -----------------------------------ccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccC
Q 036593 450 -----------------------------------LWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNI 494 (574)
Q Consensus 450 -----------------------------------~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 494 (574)
+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 333577999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCc-ccc
Q 036593 495 PSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNM-LEG 564 (574)
Q Consensus 495 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~-~~~ 564 (574)
|..++++++|+.|+|++|++++.+|..+..+++|+.|++++|++.+.+|+. ..+.++....+.+|+ +.|
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 999999999999999999999999999999999999999999999888865 345566667778887 444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.5e-53 Score=453.65 Aligned_cols=523 Identities=22% Similarity=0.215 Sum_probs=332.4
Q ss_pred CCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEE
Q 036593 41 HQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMS 120 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 120 (574)
.+++++|+++++.+.+..+..|.++++|++|++++|.+.+..+.+|+++++|++|++++|++.+..+.+|+++++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 36899999999999987777899999999999999999888889999999999999999999976667899999999999
Q ss_pred ccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCcccc--CCCCCCEEEccCCcc
Q 036593 121 LRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIG--NLQNLESLALGTNNL 198 (574)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~ 198 (574)
+++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+. .+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999999877778899999999999999999877788889999999999999988866665543 568899999999988
Q ss_pred cccCchhhccc---------------------------CCCcEEEcccCcccccCCchhhcCCC--CcCeeeccccccee
Q 036593 199 SGLIPPAIFNI---------------------------STIRVLNLHSNQFSGRLPSTIGHSLP--NIEYLTLAINNLIG 249 (574)
Q Consensus 199 ~~~~~~~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~ 249 (574)
....+..+..+ ++|+.|++++|.+.+..+..+. .++ +|+.|++++|.+..
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCc
Confidence 87777666544 4566666666666655454443 343 48888888888777
Q ss_pred cCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCcccc-ccccccCCCCCcEEEccCCCCC
Q 036593 250 TIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWS-FLSSLTNCRKLSYLVLDSNPLG 328 (574)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~ 328 (574)
..+..+..+++|++|++++|.+.+..+..+.++++|+.|+++++............. -...+..+++|++|++++|.++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 777777888888888888888877777777777777777777653221000000000 0013566777777777777776
Q ss_pred CCCChhhhhhccccceEEecccccc--ccCCccccC--CCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccC
Q 036593 329 GILPPLIGNFSASLQSFYAYECKLG--GSIPKEIGN--LRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSI 404 (574)
Q Consensus 329 ~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 404 (574)
+..+..+..+. +++.+++++|.+. ......+.. .++|+.+++++|.+.+..+.++..+++|++|++++|++++.+
T Consensus 343 ~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 343 GIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCTTTTTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCChhHhcccc-CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 66555554443 5555555555422 111111111 134555555555555444445555555555555555544332
Q ss_pred C-------CCCceEEccCCeeeecCCcc--------------------------CcCCCCCCeEECCCCeecccCCcccc
Q 036593 405 P-------YDLCHLELNGNKLSGHIPPC--------------------------LASLTSLRELRLGSNKLTSSIPSSLW 451 (574)
Q Consensus 405 ~-------~~l~~l~l~~~~l~~~~~~~--------------------------~~~~~~L~~L~l~~n~~~~~~~~~~~ 451 (574)
| ..++++++++|.+++..+.. +..+++|++|++++|++++..+.++.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 2 23445555555554444444 44445555555555554444444444
Q ss_pred CCCCCCeEeCCCCcceecCC--------ccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCcccc
Q 036593 452 SLEYILEINLSSNSLNDSLP--------SNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVG 523 (574)
Q Consensus 452 ~~~~L~~L~L~~~~l~~~~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 523 (574)
.+++|++|++++|.+..... ..+..+++|++|++++|++..+.+..|.++++|++|++++|+++...+..|.
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 581 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence 45555555555554433211 1134445555555555555433333445555555555555555543334444
Q ss_pred CCcCCCeeeCCCCcccccCCcCcc-cCCCCCeEeccCCccccc
Q 036593 524 SLISLESLDLSGNNFSGKIPKSLE-ALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 524 ~~~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~l~l~~n~~~~~ 565 (574)
.+++|+.|++++|+++...+..+. .+++|+.+++++|++...
T Consensus 582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 555555555555555543333343 445555555555554443
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-53 Score=447.80 Aligned_cols=506 Identities=21% Similarity=0.195 Sum_probs=357.0
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCc
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNN 125 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 125 (574)
.+++++.+++ .+|..+. +++++|++++|.+.+..+.+|+++++|++|++++|++.+..|.+|+++++|++|++++|.
T Consensus 16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 3445555444 2343333 245555555555555445555555555555555555555555555555555555555555
Q ss_pred ccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchh
Q 036593 126 ITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPA 205 (574)
Q Consensus 126 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 205 (574)
+....|..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.......+..+++|++|++++|.+....+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 55444555555555555555555555433444555555555555555555433333333555555555555555555555
Q ss_pred hcccCCCc--EEEcccCcccccCCchhhcCCCCcCeeecccccc--------------------------eecCCcCccC
Q 036593 206 IFNISTIR--VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL--------------------------IGTIPDSLTN 257 (574)
Q Consensus 206 l~~~~~L~--~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--------------------------~~~~~~~~~~ 257 (574)
+..+++|+ .|++++|.+.+..+..+ ....|+.++++++.. .......+..
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 55555555 55555555553333322 233455555444320 0111122222
Q ss_pred CC--CccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhh
Q 036593 258 AS--KLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLI 335 (574)
Q Consensus 258 ~~--~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 335 (574)
+. +|+.+++++|.+....+..|..+++|++|++++|.+... +..+..+++|++|++++|.+....+..+
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l---------p~~l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL---------PSGLVGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCC---------CSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCC---------ChhhcccccCCEEECccCCcCcCchhhh
Confidence 22 688889998888877777788888999999988887753 3346778889999999888887766666
Q ss_pred hhhccccceEEeccccccccCC-ccccCCCCCcEEECcCCCCcccC--CcCccccCCCCeEeccCCcccccCC------C
Q 036593 336 GNFSASLQSFYAYECKLGGSIP-KEIGNLRGLILLTLDFNDLNGTI--PTSVGTLQQLQGLSLEDNNLEGSIP------Y 406 (574)
Q Consensus 336 ~~~~~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~------~ 406 (574)
..++ +++.+++++|.+....+ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|++++..| .
T Consensus 322 ~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 400 (606)
T 3t6q_A 322 SNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400 (606)
T ss_dssp GGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT
T ss_pred hccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc
Confidence 6655 88899998888775444 34788899999999999887665 6678888999999999998776544 4
Q ss_pred CCceEEccCCeeeecCCc-cCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceec---CCccccCCCCCCE
Q 036593 407 DLCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDS---LPSNVQKLKVLRV 482 (574)
Q Consensus 407 ~l~~l~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~l~~L~~ 482 (574)
.++++++++|.+++..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 577899999988866554 488999999999999999988888999999999999999998763 3356889999999
Q ss_pred EeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcc
Q 036593 483 LDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNML 562 (574)
Q Consensus 483 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~ 562 (574)
|++++|.+.+..+..+.++++|++|++++|++++..+..+..+++| .|++++|+++...|..+..+++|+.+++++|++
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 9999999998888899999999999999999999999999999999 999999999988888899999999999999999
Q ss_pred ccccC
Q 036593 563 EGEIP 567 (574)
Q Consensus 563 ~~~~p 567 (574)
....|
T Consensus 560 ~c~c~ 564 (606)
T 3t6q_A 560 DCTCS 564 (606)
T ss_dssp ECSGG
T ss_pred cccCC
Confidence 87654
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.2e-52 Score=444.80 Aligned_cols=492 Identities=21% Similarity=0.226 Sum_probs=374.5
Q ss_pred CCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEE
Q 036593 41 HQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMS 120 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 120 (574)
..++++|+++++.+.+..|.+|.++++|++|++++|.+.+..+.+|+++++|++|++++|++.+..+..|+++++|++|+
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 47899999999999988888899999999999999998765556799999999999999999888888999999999999
Q ss_pred ccCCcccccCCcCCCCCCCCceeecccccCcccCchhcc--CCCCCCEEEccCCcCCcCCCccccCC-------------
Q 036593 121 LRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIG--NLSNLFDLDLRHNNLQDQIPTEIGNL------------- 185 (574)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l------------- 185 (574)
+++|.+.+..+..+.++++|++|++++|.+.+..+..+. .+++|++|++++|.+....+..+..+
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence 999999877788888999999999999988766555543 56889999999988876666555433
Q ss_pred --------------CCCCEEEccCCcccccCchhhcccCC--CcEEEcccCcccccCCchhhcCCCCcCeeeccccccee
Q 036593 186 --------------QNLESLALGTNNLSGLIPPAIFNIST--IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIG 249 (574)
Q Consensus 186 --------------~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 249 (574)
++|++|++++|.+.+..+..+..++. |++|++++|.+.+..+..+. .+++|++|++++|.+..
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSE
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCc
Confidence 45666777777776666666766644 88888888877744444443 67778888888777776
Q ss_pred cCCcCccCCCCccEEeCCCCcee---------ecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCC-----
Q 036593 250 TIPDSLTNASKLIGLDLGSNSFS---------GHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCR----- 315 (574)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~----- 315 (574)
..+..+..+++|++|+++++... ......|..+++|++|++++|.+....... +.+++
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L 358 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM--------FTGLINLKYL 358 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT--------TTTCTTCCEE
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH--------hccccCCcEE
Confidence 66666666666666666654322 111124555666666666666555433221 33334
Q ss_pred -----------------------CCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCC-ccccCCCCCcEEEC
Q 036593 316 -----------------------KLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIP-KEIGNLRGLILLTL 371 (574)
Q Consensus 316 -----------------------~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~L~l 371 (574)
+|+.|++++|.++...+..+.... +++.+++++|.+...++ ..+..+++|+++++
T Consensus 359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC-CCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 455555555555555555544443 67777777777665443 45667777777777
Q ss_pred cCCCCcccCCcCccccCCCCeEeccCCccc--ccCC------CCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeec
Q 036593 372 DFNDLNGTIPTSVGTLQQLQGLSLEDNNLE--GSIP------YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLT 443 (574)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~------~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 443 (574)
++|.+.+..+..|..+++|++|++++|.+. +..| ..++.+++++|++++..+..+..+++|++|++++|+++
T Consensus 438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred CCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 777776666667777777888887777765 2333 46889999999999877788999999999999999997
Q ss_pred ccCC--------ccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccc
Q 036593 444 SSIP--------SSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQ 515 (574)
Q Consensus 444 ~~~~--------~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 515 (574)
+... ..+..+++|++|++++|.+....+..|..+++|++|++++|+++...+..|.++++|++|++++|+++
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 5422 23788999999999999998766678999999999999999999777788899999999999999999
Q ss_pred ccCCcccc-CCcCCCeeeCCCCcccccC
Q 036593 516 GPIPESVG-SLISLESLDLSGNNFSGKI 542 (574)
Q Consensus 516 ~~~~~~l~-~~~~L~~L~l~~n~~~~~~ 542 (574)
+..+..+. .+++|+.|++++|++.+..
T Consensus 598 ~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 598 SVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp BCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred ccChhHhcccccccCEEEccCCCcccCC
Confidence 87777777 7899999999999998643
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.2e-51 Score=430.77 Aligned_cols=488 Identities=22% Similarity=0.188 Sum_probs=425.7
Q ss_pred CCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEE
Q 036593 41 HQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMS 120 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 120 (574)
...+++|+++++.+++..+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|++.+..|.+|+++++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 36799999999999988899999999999999999999888899999999999999999999988899999999999999
Q ss_pred ccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCC--EEEccCCcc
Q 036593 121 LRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLE--SLALGTNNL 198 (574)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~ 198 (574)
+++|.+....+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+....+..+..+++|+ +|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999876678899999999999999999864434566699999999999999988788899999999 899999999
Q ss_pred cccCchhhcccCCCcEEEcccCccc-------------------------ccCCchhhcCCC--CcCeeecccccceecC
Q 036593 199 SGLIPPAIFNISTIRVLNLHSNQFS-------------------------GRLPSTIGHSLP--NIEYLTLAINNLIGTI 251 (574)
Q Consensus 199 ~~~~~~~l~~~~~L~~L~l~~~~~~-------------------------~~~~~~~~~~l~--~L~~L~l~~~~~~~~~ 251 (574)
....+..+. ...|+.|+++++... ..++...+..+. .|+.++++++.+....
T Consensus 192 ~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 192 AGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred CccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 887776654 467888988876411 011111121222 7899999999998888
Q ss_pred CcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCC
Q 036593 252 PDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGIL 331 (574)
Q Consensus 252 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 331 (574)
+..|..+++|++|++++|.++ ..|..+..+++|++|++++|.+.... ...+..+++|++|++++|.+....
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC--------QISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG--------GGCGGGCTTCSEEECCSCSSCCBC
T ss_pred HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc--------hhhhhccCcCCEEECCCCCccccc
Confidence 888999999999999999998 56778999999999999999988653 234788999999999999887544
Q ss_pred Ch-hhhhhccccceEEeccccccccC--CccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCC---
Q 036593 332 PP-LIGNFSASLQSFYAYECKLGGSI--PKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP--- 405 (574)
Q Consensus 332 ~~-~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--- 405 (574)
+. .+..+ ++++.+++++|.+.... +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..|
T Consensus 342 ~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 342 GTGCLENL-ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp CSSTTTTC-TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred chhhhhcc-CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence 43 34444 49999999999998655 7788999999999999999998888999999999999999999886543
Q ss_pred ----CCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeeccc---CCccccCCCCCCeEeCCCCcceecCCccccCCC
Q 036593 406 ----YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS---IPSSLWSLEYILEINLSSNSLNDSLPSNVQKLK 478 (574)
Q Consensus 406 ----~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~ 478 (574)
..++.|++++|.+++..+..+..+++|++|++++|++.+. .+..+..+++|++|++++|.+.+..+..+..++
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence 4688999999999988888999999999999999999763 336788999999999999999998899999999
Q ss_pred CCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 479 VLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 479 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
+|++|++++|++.+..+..+.++++| +|++++|.+++..|..+..+++|+.|++++|++.+
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 99999999999998889999999999 99999999998888889999999999999999985
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.5e-51 Score=432.34 Aligned_cols=507 Identities=21% Similarity=0.181 Sum_probs=388.8
Q ss_pred CcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEc
Q 036593 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 121 (574)
+++++|+++++.+++..+..|.++++|++|++++|.+.+..+.+|.++++|++|++++|++.+..|.+|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 56777777777777666667777777777777777777666777777777777777777777666777777777777777
Q ss_pred cCCcccccCCcCCCCCCCCceeecccccCcc-cCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCC----EEEccCC
Q 036593 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLE----SLALGTN 196 (574)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~ 196 (574)
++|.+....+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+....+..+..+++|+ ++++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 7777765555667777777777777777764 4567777777777777777777766666665554443 6777777
Q ss_pred cccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceec------CCcCccCCC--CccEEeC-C
Q 036593 197 NLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGT------IPDSLTNAS--KLIGLDL-G 267 (574)
Q Consensus 197 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------~~~~~~~~~--~L~~L~l-~ 267 (574)
.+....+..+... +|+.|++++|.+.+.........++.++.+.+....+... ....+..+. .++.+++ .
T Consensus 192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 7765555544433 6777777777665332222333666777666543322110 011111111 3556666 5
Q ss_pred CCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEe
Q 036593 268 SNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYA 347 (574)
Q Consensus 268 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 347 (574)
.+.+.+..+. +..+++|+.++++++.+...+ .+..+++|++|++++|.+..+ +.. ..++++.+++
T Consensus 271 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~----------~l~~~~~L~~L~l~~n~l~~l-p~~---~l~~L~~L~l 335 (606)
T 3vq2_A 271 TNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE----------DVPKHFKWQSLSIIRCQLKQF-PTL---DLPFLKSLTL 335 (606)
T ss_dssp CTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC----------CCCTTCCCSEEEEESCCCSSC-CCC---CCSSCCEEEE
T ss_pred cccccccccc-cccCCCCCEEEecCccchhhh----------hccccccCCEEEcccccCccc-ccC---CCCccceeec
Confidence 5566655665 888999999999999886543 377889999999999998544 433 4458999999
Q ss_pred ccccccccCCccccCCCCCcEEECcCCCCccc--CCcCccccCCCCeEeccCCcccccC-----CCCCceEEccCCeeee
Q 036593 348 YECKLGGSIPKEIGNLRGLILLTLDFNDLNGT--IPTSVGTLQQLQGLSLEDNNLEGSI-----PYDLCHLELNGNKLSG 420 (574)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~l~~l~l~~~~l~~ 420 (574)
++|...... .+..+++|++|++++|.+++. .+..+..+++|++|++++|++++.. ...++.+++++|.+++
T Consensus 336 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 336 TMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp ESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES
T ss_pred cCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC
Confidence 999665444 467899999999999998865 3677889999999999999877532 2468899999999997
Q ss_pred cCC-ccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCccee-cCCccccCCCCCCEEeCCCCcccccCcccc
Q 036593 421 HIP-PCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLND-SLPSNVQKLKVLRVLDLSRNQLSGNIPSTI 498 (574)
Q Consensus 421 ~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 498 (574)
..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|++.+..+..+
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 776 678899999999999999998888999999999999999999987 478889999999999999999998888889
Q ss_pred cCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCC-CCCeEeccCCccccccC
Q 036593 499 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALS-HLKQFNVSQNMLEGEIP 567 (574)
Q Consensus 499 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~l~l~~n~~~~~~p 567 (574)
.++++|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.+++++|++....|
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999999888999999999999999999999 5677799997 69999999999987554
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.5e-49 Score=418.91 Aligned_cols=482 Identities=20% Similarity=0.175 Sum_probs=386.2
Q ss_pred CCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEE
Q 036593 40 RHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIM 119 (574)
Q Consensus 40 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 119 (574)
...++++|+++++.+++..+.+|.++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..+..++++++|++|
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 45889999999999998889999999999999999999988889999999999999999999998887889999999999
Q ss_pred EccCCcccc-cCCcCCCCCCCCceeecccccCcccCchhccCCCCC----CEEEccCCcCCcCCCccccCCCCCCEEEcc
Q 036593 120 SLRNNNITG-PIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNL----FDLDLRHNNLQDQIPTEIGNLQNLESLALG 194 (574)
Q Consensus 120 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 194 (574)
++++|.+.. ..|..+.++++|++|++++|.+.+..+..++.+++| ++|++++|.+....+..+... +|++|+++
T Consensus 134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~ 212 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLR 212 (606)
T ss_dssp ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEE
T ss_pred eCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeecc
Confidence 999999875 468889999999999999999987777777766655 489999999987666666555 89999999
Q ss_pred CCccc-ccCchhhcccCCCcEEEcccCcccc-----cCCchhhcCCC--CcCeeec-ccccceecCCcCccCCCCccEEe
Q 036593 195 TNNLS-GLIPPAIFNISTIRVLNLHSNQFSG-----RLPSTIGHSLP--NIEYLTL-AINNLIGTIPDSLTNASKLIGLD 265 (574)
Q Consensus 195 ~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~l~--~L~~L~l-~~~~~~~~~~~~~~~~~~L~~L~ 265 (574)
+|.+. ...+..+..+++|+.+.+....+.+ .........+. .++.+++ ..+.+....+. +..+++|+.++
T Consensus 213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~ 291 (606)
T 3vq2_A 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMS 291 (606)
T ss_dssp SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEE
T ss_pred CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEE
Confidence 99876 4566778889999988875443221 11111111111 3444555 33444444443 77778888888
Q ss_pred CCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceE
Q 036593 266 LGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSF 345 (574)
Q Consensus 266 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 345 (574)
++++.+.. .+ .+..+++|++|++++|.+...+ .+ .+++|++|++++|...... .+. ..++++.+
T Consensus 292 l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~~lp----------~~-~l~~L~~L~l~~n~~~~~~--~~~-~l~~L~~L 355 (606)
T 3vq2_A 292 LAGVSIKY-LE-DVPKHFKWQSLSIIRCQLKQFP----------TL-DLPFLKSLTLTMNKGSISF--KKV-ALPSLSYL 355 (606)
T ss_dssp EESCCCCC-CC-CCCTTCCCSEEEEESCCCSSCC----------CC-CCSSCCEEEEESCSSCEEC--CCC-CCTTCCEE
T ss_pred ecCccchh-hh-hccccccCCEEEcccccCcccc----------cC-CCCccceeeccCCcCccch--hhc-cCCCCCEE
Confidence 88887753 33 6777888888888888774332 24 6778888888877433322 222 23478888
Q ss_pred Eecccccccc--CCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCC-------CCCceEEccCC
Q 036593 346 YAYECKLGGS--IPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP-------YDLCHLELNGN 416 (574)
Q Consensus 346 ~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~l~~l~l~~~ 416 (574)
++++|.+... .+..+..+++|++|++++|.+.+. +..+..+++|++|++++|++.+..| ..++.|++++|
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 8888877654 366777888888888888887753 3677888888888888888776544 35778888888
Q ss_pred eeeecCCccCcCCCCCCeEECCCCeecc-cCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCc
Q 036593 417 KLSGHIPPCLASLTSLRELRLGSNKLTS-SIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIP 495 (574)
Q Consensus 417 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 495 (574)
.+++..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 8888888889999999999999999987 378889999999999999999999888899999999999999999998888
Q ss_pred ccccCCCCCCEeeCCCCcccccCCccccCCc-CCCeeeCCCCccccc
Q 036593 496 STIGALVDLETLSLASNQFQGPIPESVGSLI-SLESLDLSGNNFSGK 541 (574)
Q Consensus 496 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~ 541 (574)
..+.++++|++|++++|+++ .+|..+..++ +|+.|++++|++.+.
T Consensus 515 ~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp GGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred HHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 99999999999999999999 6677788887 599999999999853
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-49 Score=432.43 Aligned_cols=519 Identities=19% Similarity=0.177 Sum_probs=423.7
Q ss_pred CccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccC-chhhcCCCCCCEEEccCCcCccCC
Q 036593 28 MRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHL-PNELGKLGRLKFISFSFNKLSGSI 106 (574)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~ 106 (574)
..+.|..+++ -.+++++|++++|.+++..+..|.++++|++|+|++|...+.+ +.+|+++++|++|++++|++.+..
T Consensus 12 s~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 12 RFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp SCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred cCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 4456666776 3578999999999999888999999999999999999655444 778999999999999999999888
Q ss_pred CccccCCCCCCEEEccCCcccccCCcC--CCCCCCCceeecccccCcccCc-hhccCCCCCCEEEccCCcCCcCCCcccc
Q 036593 107 PTWIGVLSKLQIMSLRNNNITGPIPNS--LFNLSKLEMLQASFNVIDGNIP-SGIGNLSNLFDLDLRHNNLQDQIPTEIG 183 (574)
Q Consensus 107 ~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 183 (574)
|.+|.++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+....+..+.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 999999999999999999988655554 8899999999999999875544 5789999999999999999888888887
Q ss_pred CC--CCCCEEEccCCcccccCchhhcccCC------CcEEEcccCcccccCCchhhcCC--CCcCeeeccccc-------
Q 036593 184 NL--QNLESLALGTNNLSGLIPPAIFNIST------IRVLNLHSNQFSGRLPSTIGHSL--PNIEYLTLAINN------- 246 (574)
Q Consensus 184 ~l--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~------- 246 (574)
.+ ++|+.|+++.|.+....+..+..+++ |+.|++++|.+.+..+..+...+ ..++.+.+..+.
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 77 89999999999988777766666555 99999999988777776665433 466777765322
Q ss_pred --ceecCCcCccC--CCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEc
Q 036593 247 --LIGTIPDSLTN--ASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVL 322 (574)
Q Consensus 247 --~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 322 (574)
+.......|.. .++|+.|++++|.+....+..|..+++|+.|++++|.+...... .+.++++|++|++
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--------~~~~l~~L~~L~L 321 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE--------AFYGLDNLQVLNL 321 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT--------TTTTCSSCCEEEE
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH--------HhcCCCCCCEEEC
Confidence 22222233443 36899999999999888888899999999999999998875433 3788999999999
Q ss_pred cCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccc
Q 036593 323 DSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG 402 (574)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 402 (574)
++|.++...+..+..++ +++.|++++|.+....+..+..+++|++|++++|.+++. ..+++|++|++++|+++.
T Consensus 322 s~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT 395 (844)
T ss_dssp ESCCCSCCCSCSCSSCT-TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC
T ss_pred CCCCCCccCHHHhcCCC-CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc
Confidence 99999888777777665 899999999999877777889999999999999988743 338899999999999874
Q ss_pred c--CCCCCceEEccCCeeeecCC-ccCcCCCCCCeEECCCCeecccCCc-cccCCCCCCeEeCCCCcce-----ecCCcc
Q 036593 403 S--IPYDLCHLELNGNKLSGHIP-PCLASLTSLRELRLGSNKLTSSIPS-SLWSLEYILEINLSSNSLN-----DSLPSN 473 (574)
Q Consensus 403 ~--~~~~l~~l~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~l~-----~~~~~~ 473 (574)
. ....+..+++++|++++... ..+..+++|+.|++++|++++..+. .+..+++|++|++++|.+. +..+..
T Consensus 396 l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp CCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred ccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh
Confidence 2 23467899999999885322 2345789999999999999755332 4566899999999999986 334466
Q ss_pred ccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCC
Q 036593 474 VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLK 553 (574)
Q Consensus 474 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 553 (574)
+..+++|++|++++|.+++..+..|.++++|+.|+|++|++++..+..+. ++|+.|++++|++....|..| ++|+
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~ 550 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLS 550 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCC
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcC
Confidence 88899999999999999988888899999999999999999976666666 799999999999998777665 4799
Q ss_pred eEeccCCccccccC
Q 036593 554 QFNVSQNMLEGEIP 567 (574)
Q Consensus 554 ~l~l~~n~~~~~~p 567 (574)
.+++++|++....|
T Consensus 551 ~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 551 VLDITHNKFICECE 564 (844)
T ss_dssp EEEEEEECCCCSSS
T ss_pred EEEecCCCcccccc
Confidence 99999999876543
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-48 Score=407.69 Aligned_cols=492 Identities=21% Similarity=0.193 Sum_probs=339.0
Q ss_pred CcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEc
Q 036593 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 121 (574)
.++++|+++++.+++..+.+|..+++|++|++++|.+.+..+.+|+++++|++|++++|++.+..+.+|+.+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45677777777776666666777777777777777766655666777777777777777776666666777777777777
Q ss_pred cCCcccccCCcCCCCCCCCceeecccccCcc-cCchhccCCCCCCEEEccCCcCCcCCCccccCCCCC----CEEEccCC
Q 036593 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNL----ESLALGTN 196 (574)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~ 196 (574)
++|.+....+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+....+..++.+++| +++++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 7776664444456677777777777776654 346667777777777777776665555566666666 66777777
Q ss_pred cccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccc------eecCCcCccCCC--CccEEeCCC
Q 036593 197 NLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL------IGTIPDSLTNAS--KLIGLDLGS 268 (574)
Q Consensus 197 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~~~--~L~~L~l~~ 268 (574)
.+....+..+... +|+.|++++|.............++.++...+....+ .......+..++ .++.+++.+
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 7666655555444 5777777665322111111112444444433322111 111222233222 245556655
Q ss_pred C-ceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEe
Q 036593 269 N-SFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYA 347 (574)
Q Consensus 269 ~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 347 (574)
+ .+.+..+..+..+++|+.|++++|.+...+ ..+..+ +|++|++++|.+..... ...++++.+.+
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~---------~~~~~~-~L~~L~l~~n~~~~l~~----~~l~~L~~L~l 332 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK---------DFSYNF-GWQHLELVNCKFGQFPT----LKLKSLKRLTF 332 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEECSCC---------BCCSCC-CCSEEEEESCBCSSCCB----CBCSSCCEEEE
T ss_pred chhhhhhchhhhcCcCcccEEEecCccchhhh---------hhhccC-CccEEeeccCcccccCc----ccccccCEEeC
Confidence 5 555556667777778888888777766432 224455 77777777777664332 12336666666
Q ss_pred ccccccccCCccccCCCCCcEEECcCCCCcccC--CcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCcc
Q 036593 348 YECKLGGSIPKEIGNLRGLILLTLDFNDLNGTI--PTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPC 425 (574)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~ 425 (574)
.++......+. ..+++|++|++++|.+++.. +..+..+++|++|++++|+++ +. +..
T Consensus 333 ~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~------------------~~-~~~ 391 (570)
T 2z63_A 333 TSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI------------------TM-SSN 391 (570)
T ss_dssp ESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE------------------EE-EEE
T ss_pred cCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc------------------cc-ccc
Confidence 66665544433 56666677777666665432 344556666666666666655 22 333
Q ss_pred CcCCCCCCeEECCCCeecccCC-ccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCccc-ccCcccccCCCC
Q 036593 426 LASLTSLRELRLGSNKLTSSIP-SSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS-GNIPSTIGALVD 503 (574)
Q Consensus 426 ~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~ 503 (574)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +..+..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 7789999999999999986655 57889999999999999999888888999999999999999987 457788999999
Q ss_pred CCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCC
Q 036593 504 LETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVK 569 (574)
Q Consensus 504 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~ 569 (574)
|++|++++|++++..|..+..+++|+.|++++|++....+..|..+++|+.|++++|++++..|..
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999999888999999999999999999999887788999999999999999999998853
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-47 Score=419.38 Aligned_cols=505 Identities=20% Similarity=0.205 Sum_probs=423.6
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCc-cCCCccccCCCCCCEEEccC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS-GSIPTWIGVLSKLQIMSLRN 123 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~ 123 (574)
+.+++++++++. +|. -.+++++|+|++|.+.+..+..|.++++|++|++++|... .+.|.+|.++++|++|++++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 678889999985 565 3479999999999999888899999999999999999544 34588999999999999999
Q ss_pred CcccccCCcCCCCCCCCceeecccccCcccCchh--ccCCCCCCEEEccCCcCCcCCC-ccccCCCCCCEEEccCCcccc
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSG--IGNLSNLFDLDLRHNNLQDQIP-TEIGNLQNLESLALGTNNLSG 200 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~ 200 (574)
|.+....|.+|.++++|++|++++|.+.+..+.. +.++++|++|++++|.+....+ ..|+++++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999888999999999999999999998655655 8999999999999999986654 579999999999999999988
Q ss_pred cCchhhccc--CCCcEEEcccCcccccCCchhhcCCC------CcCeeecccccceecCCcCccC---CCCccEEeCCCC
Q 036593 201 LIPPAIFNI--STIRVLNLHSNQFSGRLPSTIGHSLP------NIEYLTLAINNLIGTIPDSLTN---ASKLIGLDLGSN 269 (574)
Q Consensus 201 ~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~------~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~ 269 (574)
..+..+..+ ++|+.|++++|.+.+..+..+. .++ .|+.|++++|.+....+..+.. ...++.+.+..+
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 888888877 8999999999998877666554 333 4999999999876555554443 356888887743
Q ss_pred ce---------eecCCCCccCC--CcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhh
Q 036593 270 SF---------SGHIPNTFGNL--RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF 338 (574)
Q Consensus 270 ~~---------~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 338 (574)
.. .......|.++ ++|+.|++++|.+..... ..+..+++|+.|++++|.+....+..+..+
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 313 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS--------RVFETLKDLKVLNLAYNKINKIADEAFYGL 313 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS--------CCSSSCCCCCEEEEESCCCCEECTTTTTTC
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccCh--------hhhhcCCCCCEEECCCCcCCCCChHHhcCC
Confidence 22 22233345443 789999999999876533 338889999999999999998888777766
Q ss_pred ccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccC-CCCCceEEccCCe
Q 036593 339 SASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSI-PYDLCHLELNGNK 417 (574)
Q Consensus 339 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~l~~~~ 417 (574)
. +|+.|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+++.. .+.++.+++++|.
T Consensus 314 ~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 314 D-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK 392 (844)
T ss_dssp S-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCC
T ss_pred C-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCC
Confidence 5 9999999999999888899999999999999999999888888999999999999999988532 4579999999999
Q ss_pred eeecCCccCcCCCCCCeEECCCCeecccCC-ccccCCCCCCeEeCCCCcceecCCc-cccCCCCCCEEeCCCCcccc---
Q 036593 418 LSGHIPPCLASLTSLRELRLGSNKLTSSIP-SSLWSLEYILEINLSSNSLNDSLPS-NVQKLKVLRVLDLSRNQLSG--- 492 (574)
Q Consensus 418 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~-~~~~l~~L~~L~l~~n~~~~--- 492 (574)
++ .+|.. ..+++.|++++|++.+... ..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+..
T Consensus 393 l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 393 LV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp CC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred cc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence 98 44443 5689999999999975432 2355899999999999999765432 45668999999999999863
Q ss_pred --cCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCC
Q 036593 493 --NIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVK 569 (574)
Q Consensus 493 --~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~ 569 (574)
..+..|.++++|+.|+|++|.+++..+..|..+++|+.|++++|+++...+..+. ++|+.|++++|++++..|..
T Consensus 469 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 3345688899999999999999988888899999999999999999976666666 89999999999999998854
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.4e-47 Score=396.38 Aligned_cols=495 Identities=19% Similarity=0.212 Sum_probs=354.3
Q ss_pred ccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCc
Q 036593 29 RLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPT 108 (574)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 108 (574)
.|.|.++ | ++++++++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|++.+..+.
T Consensus 3 ~C~~~~~-c----------~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-C----------DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-E----------ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-E----------ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 3666665 5 44556666 3555443 6788888888887776677788888888888888888777777
Q ss_pred cccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcc-cCchhccCCCCCCEEEccCCc-CCcCCCccccCCC
Q 036593 109 WIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNN-LQDQIPTEIGNLQ 186 (574)
Q Consensus 109 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~ 186 (574)
+|.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+ ..|..++++++|++|++++|. +....+..+.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 78888888888888888775555567788888888888887764 245567788888888888876 4444445677888
Q ss_pred CCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecC---CcCccCCCCccE
Q 036593 187 NLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTI---PDSLTNASKLIG 263 (574)
Q Consensus 187 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~ 263 (574)
+|++|++++|.+....+..+..+++|++|+++++... .++..+...+++|+.|++++|.+.... ......+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 8888888888887777777888888888888887765 555555556788888888887766431 122335677888
Q ss_pred EeCCCCceeecCC----CCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCC----hhh
Q 036593 264 LDLGSNSFSGHIP----NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILP----PLI 335 (574)
Q Consensus 264 L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~ 335 (574)
|+++++.+.+..+ ..+..+++|+.+++++|.+........ .....+..+++++.+++.++.+..... ...
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~ 305 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP--SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC--CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccc--cchhhhhhhcccccccccccccchhhhcccchhh
Confidence 8888887764322 334567788888888887665432110 112335667888888888776654210 111
Q ss_pred hhhccccceEEeccccccccCCccc-cCCCCCcEEECcCCCCcccC---CcCccccCCCCeEeccCCcccccCCCCCceE
Q 036593 336 GNFSASLQSFYAYECKLGGSIPKEI-GNLRGLILLTLDFNDLNGTI---PTSVGTLQQLQGLSLEDNNLEGSIPYDLCHL 411 (574)
Q Consensus 336 ~~~~~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 411 (574)
.....+++.+.++++.+. .+|..+ ..+++|++|++++|.+.+.. ...+..+++|++|++++|++++..+
T Consensus 306 ~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 378 (549)
T 2z81_A 306 YSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK------ 378 (549)
T ss_dssp HHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH------
T ss_pred hhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc------
Confidence 223347788888887776 445444 56788888888888877643 2335677888888888887763100
Q ss_pred EccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCccc
Q 036593 412 ELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS 491 (574)
Q Consensus 412 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~ 491 (574)
.+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+... +..+ .++|++|++++|+++
T Consensus 379 ----------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~ 444 (549)
T 2z81_A 379 ----------TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLD 444 (549)
T ss_dssp ----------HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCS
T ss_pred ----------chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChh
Confidence 1134677889999999999887 6677788888999999999988643 3222 268999999999887
Q ss_pred ccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccC
Q 036593 492 GNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIP 567 (574)
Q Consensus 492 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 567 (574)
+. ..++++|++|++++|+++ .+|. ...+++|+.|++++|++....++.|..+++|+.|++++|++.+..|
T Consensus 445 ~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 445 SF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 53 357889999999999988 5555 4667899999999999998777788999999999999999888776
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4e-47 Score=401.24 Aligned_cols=484 Identities=20% Similarity=0.279 Sum_probs=344.3
Q ss_pred cccccCCCCccce---eeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcc------cc------cCch
Q 036593 20 LYLLKTTNMRLSW---VGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNF------YG------HLPN 84 (574)
Q Consensus 20 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~------~~------~~~~ 84 (574)
.+.|..+.++|.| .|+.|+.. ++|+.|+++++++.|.+|+.+.++++|++|+|++|.+ .+ .+|.
T Consensus 57 ~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~ 135 (636)
T 4eco_A 57 GANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135 (636)
T ss_dssp -CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH
T ss_pred CCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchH
Confidence 3468888999999 99999864 8999999999999999999999999999999999975 22 2232
Q ss_pred hhcCCCCCCEEEccCCcCccCCCccccC-------------------CCCCCEEEcc--CCcccccCCcCCCCCCCCcee
Q 036593 85 ELGKLGRLKFISFSFNKLSGSIPTWIGV-------------------LSKLQIMSLR--NNNITGPIPNSLFNLSKLEML 143 (574)
Q Consensus 85 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------------l~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~L 143 (574)
.. +..|+ +++..+.+.+..+..+.. ...++.+.+. .|.+.+ +|..+.++++|++|
T Consensus 136 ~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L 211 (636)
T 4eco_A 136 EQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQF 211 (636)
T ss_dssp HH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEE
T ss_pred HH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEE
Confidence 22 34445 555555555444443331 1122222222 345554 66667777777777
Q ss_pred ecccccCccc-----------------Cchhcc--CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCc-ccc-cC
Q 036593 144 QASFNVIDGN-----------------IPSGIG--NLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNN-LSG-LI 202 (574)
Q Consensus 144 ~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~ 202 (574)
++++|.+.+. +|..++ ++++|++|++++|.+....|..+.++++|++|++++|. +.+ ..
T Consensus 212 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~l 291 (636)
T 4eco_A 212 YMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291 (636)
T ss_dssp EEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHH
T ss_pred ECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccc
Confidence 7777777653 677777 77888888888777777777777778888888888777 665 56
Q ss_pred chhhccc------CCCcEEEcccCcccccCCc--hhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeec
Q 036593 203 PPAIFNI------STIRVLNLHSNQFSGRLPS--TIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGH 274 (574)
Q Consensus 203 ~~~l~~~------~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 274 (574)
|..+..+ ++|++|++++|.+. .+|. .+. .+++|+.|++++|.+....+ .+..+++|++|++++|.+. .
T Consensus 292 p~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~ 367 (636)
T 4eco_A 292 KDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-E 367 (636)
T ss_dssp HHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-E
T ss_pred hHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-c
Confidence 6666665 77888888887777 6666 444 67777777777777775555 6777777777777777777 5
Q ss_pred CCCCccCCCc-CceEEccCCcccccCCCCccccccccccC--CCCCcEEEccCCCCCCCCChhhhhhccccceEEecccc
Q 036593 275 IPNTFGNLRH-LNVLSIRTNNLTTESSSADQWSFLSSLTN--CRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECK 351 (574)
Q Consensus 275 ~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 351 (574)
.|..+..+++ |+.|++++|.+...+ ..+.. +++|++|++++|.+.+.
T Consensus 368 lp~~l~~l~~~L~~L~Ls~N~l~~lp---------~~~~~~~l~~L~~L~Ls~N~l~~~--------------------- 417 (636)
T 4eco_A 368 IPANFCGFTEQVENLSFAHNKLKYIP---------NIFDAKSVSVMSAIDFSYNEIGSV--------------------- 417 (636)
T ss_dssp CCTTSEEECTTCCEEECCSSCCSSCC---------SCCCTTCSSCEEEEECCSSCTTTT---------------------
T ss_pred ccHhhhhhcccCcEEEccCCcCcccc---------hhhhhcccCccCEEECcCCcCCCc---------------------
Confidence 5666777777 777777777766432 11333 23666666666665543
Q ss_pred ccccCCcccc-------CCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCc
Q 036593 352 LGGSIPKEIG-------NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPP 424 (574)
Q Consensus 352 ~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~ 424 (574)
.|..+. .+++|++|++++|.++......+..+++|++|++++|+++ .+|..... ....
T Consensus 418 ----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~----------~~~~ 482 (636)
T 4eco_A 418 ----DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLK----------DENE 482 (636)
T ss_dssp ----TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSE----------ETTE
T ss_pred ----chhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhc----------cccc
Confidence 333343 6678999999999998655555677899999999999988 44431110 1111
Q ss_pred cCcCCCCCCeEECCCCeecccCCcccc--CCCCCCeEeCCCCcceecCCccccCCCCCCEEeC------CCCcccccCcc
Q 036593 425 CLASLTSLRELRLGSNKLTSSIPSSLW--SLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDL------SRNQLSGNIPS 496 (574)
Q Consensus 425 ~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l------~~n~~~~~~~~ 496 (574)
.+..+++|++|++++|+++ .++..+. .+++|++|++++|.+.+ +|..+..+++|++|++ ++|.+.+..+.
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 2334559999999999998 6777776 89999999999999987 7778889999999999 45667777888
Q ss_pred cccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcc--------cCCCCCeEeccCCcc
Q 036593 497 TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLE--------ALSHLKQFNVSQNML 562 (574)
Q Consensus 497 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~--------~l~~L~~l~l~~n~~ 562 (574)
.+.++++|++|++++|.++ .+|..+. ++|+.|++++|++.......+. .+...+..++.+|+.
T Consensus 561 ~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~ 631 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631 (636)
T ss_dssp TGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGG
T ss_pred HHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcc
Confidence 8999999999999999995 6777655 7999999999988764433321 222345557777764
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.9e-45 Score=390.81 Aligned_cols=485 Identities=20% Similarity=0.264 Sum_probs=329.7
Q ss_pred cccCCC-----Cc--cce------------eeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEc-cCCccccc
Q 036593 22 LLKTTN-----MR--LSW------------VGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDV-TLNNFYGH 81 (574)
Q Consensus 22 ~~~~~~-----~~--~~~------------~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~ 81 (574)
.|..+. .+ |.| .|+.|+. .++|+.|+++++++.|.+|+.+.++++|++|+| ++|.+.+.
T Consensus 285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~ 363 (876)
T 4ecn_A 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363 (876)
T ss_dssp GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHT
T ss_pred CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchHHhccccceEeeeccccccccc
Confidence 687554 45 999 9999986 589999999999999999999999999999999 77776554
Q ss_pred CchhhcCC-CCCCE--------------EEc-cCCcCcc-----------CCCccccCCCCCCEEEccC--CcccccCCc
Q 036593 82 LPNELGKL-GRLKF--------------ISF-SFNKLSG-----------SIPTWIGVLSKLQIMSLRN--NNITGPIPN 132 (574)
Q Consensus 82 ~~~~~~~~-~~L~~--------------L~l-~~~~~~~-----------~~~~~~~~l~~L~~L~l~~--~~~~~~~~~ 132 (574)
.+...... +.+.. ++. ....+.+ ..+........++.+.+.. |.+.+ +|.
T Consensus 364 ~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~ 442 (876)
T 4ecn_A 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK 442 (876)
T ss_dssp TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG
T ss_pred ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhH
Confidence 22110000 00000 000 0000000 0000011222333333332 44543 555
Q ss_pred CCCCCCCCceeecccccCcc-----------------cCchhcc--CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEc
Q 036593 133 SLFNLSKLEMLQASFNVIDG-----------------NIPSGIG--NLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLAL 193 (574)
Q Consensus 133 ~~~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 193 (574)
.+.++++|++|++++|.+.+ .+|..++ ++++|++|++++|.+....|..+.++++|+.|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 56666666666666666654 3677766 8888888888888777777788888888888888
Q ss_pred cCCc-ccc-cCchhhcccC-------CCcEEEcccCcccccCCc--hhhcCCCCcCeeecccccceecCCcCccCCCCcc
Q 036593 194 GTNN-LSG-LIPPAIFNIS-------TIRVLNLHSNQFSGRLPS--TIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLI 262 (574)
Q Consensus 194 ~~~~-~~~-~~~~~l~~~~-------~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 262 (574)
++|. +.+ ..|..+..++ +|++|++++|.+. .+|. .+. .+++|+.|++++|.+. ..+ .+..+++|+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLT 598 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-BCC-CCCTTSEES
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-cch-hhcCCCcce
Confidence 8887 665 5666665554 8888888888888 7777 554 7888888888888887 455 788888899
Q ss_pred EEeCCCCceeecCCCCccCCCc-CceEEccCCcccccCCCCccccccccccCC--CCCcEEEccCCCCCCCCChhhhhhc
Q 036593 263 GLDLGSNSFSGHIPNTFGNLRH-LNVLSIRTNNLTTESSSADQWSFLSSLTNC--RKLSYLVLDSNPLGGILPPLIGNFS 339 (574)
Q Consensus 263 ~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~ 339 (574)
.|++++|.+. ..|..+..+++ |+.|++++|.+...+ ..+... ++|+.|++++|.+.+..+..
T Consensus 599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp---------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l----- 663 (876)
T 4ecn_A 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIP---------NIFNAKSVYVMGSVDFSYNKIGSEGRNI----- 663 (876)
T ss_dssp EEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCC---------SCCCTTCSSCEEEEECCSSCTTTTSSSC-----
T ss_pred EEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCc---------hhhhccccCCCCEEECcCCcCCCccccc-----
Confidence 9999998887 67777888888 999999998877432 224444 34899999998887543211
Q ss_pred cccceEEeccccccccCCcccc--CCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCe
Q 036593 340 ASLQSFYAYECKLGGSIPKEIG--NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNK 417 (574)
Q Consensus 340 ~~L~~l~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~ 417 (574)
+..+. .+++|+.|++++|.+.......+..+++|++|++++|+++ .+|..+..
T Consensus 664 -----------------~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~------- 718 (876)
T 4ecn_A 664 -----------------SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLK------- 718 (876)
T ss_dssp -----------------SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSS-------
T ss_pred -----------------hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhc-------
Confidence 11111 3457888888888887444344457788888888888877 33321100
Q ss_pred eeecCCccCcCCCCCCeEECCCCeecccCCcccc--CCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCC------Cc
Q 036593 418 LSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLW--SLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSR------NQ 489 (574)
Q Consensus 418 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~------n~ 489 (574)
.....+.++++|++|+|++|+++ .++..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|++++ |.
T Consensus 719 ---~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 719 ---PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp ---CTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred ---cccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccc
Confidence 01111334558888888888887 5666665 78888888888888876 566677888888888866 66
Q ss_pred ccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCC
Q 036593 490 LSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQN 560 (574)
Q Consensus 490 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n 560 (574)
+.+..|..+.++++|+.|+|++|.+. .+|..+. ++|+.|+|++|++....+..+.....+..+.+.+|
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n 861 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECC
T ss_pred ccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCC
Confidence 77777888888999999999999884 6777655 58999999999888766666554444444444444
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-44 Score=376.45 Aligned_cols=486 Identities=22% Similarity=0.219 Sum_probs=370.5
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 124 (574)
+.+++++.+++ .+|..+. +++++|++++|.+.+..+.+|.++++|++|++++|++.+..+.+|+++++|++|++++|
T Consensus 10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 35788887777 4666554 58999999999998887889999999999999999999888899999999999999999
Q ss_pred cccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcC-CCccccCCCCCCEEEccCCcccccCc
Q 036593 125 NITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ-IPTEIGNLQNLESLALGTNNLSGLIP 203 (574)
Q Consensus 125 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 203 (574)
.+....+.+|.++++|++|++++|.+.+..+..++++++|++|++++|.+... .|..+.++++|++|++++|.+....+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 99877778899999999999999999855555699999999999999998863 58889999999999999999998888
Q ss_pred hhhcccCCC----cEEEcccCcccccCCchhhcCCCCcCeeeccccccee-cCCcCccCCCCccEEeCCCCc------ee
Q 036593 204 PAIFNISTI----RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIG-TIPDSLTNASKLIGLDLGSNS------FS 272 (574)
Q Consensus 204 ~~l~~~~~L----~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~------~~ 272 (574)
..+..+++| +.+++++|.+.+..+..+. ..+|+.++++++.... ..+..+..+++++...+.... +.
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 888888888 8999999998855454442 3379999988764321 122334455555554443211 12
Q ss_pred ecCCCCccCCCc--CceEEccCC-cccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEecc
Q 036593 273 GHIPNTFGNLRH--LNVLSIRTN-NLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYE 349 (574)
Q Consensus 273 ~~~~~~l~~l~~--L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~ 349 (574)
......+..+++ ++.+++..+ .+... ....+..+++|+.|+++++.+... +..+... +++.+++.+
T Consensus 245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~--------~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~~--~L~~L~l~~ 313 (570)
T 2z63_A 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDD--------IIDLFNCLTNVSSFSLVSVTIERV-KDFSYNF--GWQHLELVN 313 (570)
T ss_dssp ECCTTTTGGGGGSEEEEEEEEETTEEESC--------STTTTGGGTTCSEEEEESCEECSC-CBCCSCC--CCSEEEEES
T ss_pred hcchhhhccccccchhhhhhhcchhhhhh--------chhhhcCcCcccEEEecCccchhh-hhhhccC--CccEEeecc
Confidence 222333444433 334444444 22222 233366677777777777766642 3333333 566666666
Q ss_pred ccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCC
Q 036593 350 CKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASL 429 (574)
Q Consensus 350 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~ 429 (574)
|.+. .+|. ..+++|+.+++++|.+....+. ..+++|++|++++|++++.. ..+..+..+
T Consensus 314 n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~----------------~~~~~~~~~ 372 (570)
T 2z63_A 314 CKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG----------------CCSQSDFGT 372 (570)
T ss_dssp CBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEE----------------EEEHHHHTC
T ss_pred Cccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccc----------------ccccccccc
Confidence 6665 3333 3556666666666665543332 45666666666666655210 124567789
Q ss_pred CCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCC-ccccCCCCCCEEeCCCCcccccCcccccCCCCCCEee
Q 036593 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLP-SNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLS 508 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 508 (574)
++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+.++++|++|+
T Consensus 373 ~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451 (570)
T ss_dssp SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence 9999999999999855444 8899999999999999987655 5788999999999999999988888999999999999
Q ss_pred CCCCccc-ccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCC
Q 036593 509 LASNQFQ-GPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 509 l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
+++|.+. +..|..+..+++|+.|++++|++....|..|..+++|+.|++++|++++..|.
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 9999997 46888999999999999999999988899999999999999999999987654
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-44 Score=376.16 Aligned_cols=471 Identities=18% Similarity=0.205 Sum_probs=382.0
Q ss_pred CCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEE
Q 036593 41 HQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMS 120 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 120 (574)
.+.+++|+++++.+++..+..|.++++|++|++++|.+.+..+.+|..+++|++|++++|++.+..+..|+++++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 36899999999999988889999999999999999999888888999999999999999999988888899999999999
Q ss_pred ccCCccccc-CCcCCCCCCCCceeecccccCcccC-chhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcc
Q 036593 121 LRNNNITGP-IPNSLFNLSKLEMLQASFNVIDGNI-PSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNL 198 (574)
Q Consensus 121 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 198 (574)
+++|.+... .+..+.++++|++|++++|...+.+ +..+.++++|++|++++|.+....+..+..+++|++|+++.|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 999998853 4677999999999999999843344 46799999999999999999988899999999999999999987
Q ss_pred cccCchhhcccCCCcEEEcccCcccccC--CchhhcCCCCcCeeecccccceecC----CcCccCCCCccEEeCCCCcee
Q 036593 199 SGLIPPAIFNISTIRVLNLHSNQFSGRL--PSTIGHSLPNIEYLTLAINNLIGTI----PDSLTNASKLIGLDLGSNSFS 272 (574)
Q Consensus 199 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~ 272 (574)
.......+..+++|+.|++++|.+.+.. +..+...+++|+.|+++++.+.... ...+..+++|+.+++++|.+.
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 6443344456899999999999987432 3334446789999999998876532 233456789999999999886
Q ss_pred ecC------CCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEE
Q 036593 273 GHI------PNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFY 346 (574)
Q Consensus 273 ~~~------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 346 (574)
+.. ...+..+++++.+++.++.+....... .+.......++|+.|++++|.+..+ +..+....++++.|+
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~---~l~~~~~~~~~L~~L~l~~n~l~~i-p~~~~~~l~~L~~L~ 340 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY---DLSTVYSLLEKVKRITVENSKVFLV-PCSFSQHLKSLEFLD 340 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSC---CCCHHHHHSTTCCEEEEESSCCCCC-CHHHHHHCTTCCEEE
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcc---cchhhhhhcccceEEEeccCccccC-CHHHHhcCccccEEE
Confidence 431 233567889999999888765432110 1111133467899999999998754 444433345999999
Q ss_pred eccccccccCC---ccccCCCCCcEEECcCCCCcccCC--cCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeec
Q 036593 347 AYECKLGGSIP---KEIGNLRGLILLTLDFNDLNGTIP--TSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGH 421 (574)
Q Consensus 347 l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~ 421 (574)
+++|.+.+..+ ..+..+++|++|++++|.+++... ..+..+++|++|++++|+++ .
T Consensus 341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------~ 401 (549)
T 2z81_A 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-------------------P 401 (549)
T ss_dssp CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-------------------C
T ss_pred ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-------------------c
Confidence 99999987553 346789999999999999976532 45788999999999999887 4
Q ss_pred CCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCC
Q 036593 422 IPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGAL 501 (574)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 501 (574)
+|..+..+++|++|++++|++.. .+..+ .++|++|++++|.+.+. +..+++|++|++++|+++ .++. ...+
T Consensus 402 lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l 472 (549)
T 2z81_A 402 MPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLF 472 (549)
T ss_dssp CCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGC
T ss_pred CChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccC
Confidence 55667788999999999999873 33333 36899999999998764 257899999999999998 4444 4678
Q ss_pred CCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCC
Q 036593 502 VDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIP 543 (574)
Q Consensus 502 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 543 (574)
++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 473 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999999999998888889999999999999999876444
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.5e-44 Score=370.72 Aligned_cols=459 Identities=21% Similarity=0.242 Sum_probs=299.1
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 124 (574)
+++++++++++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|++.+..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 58999999999 4676665 89999999999998877889999999999999999999888999999999999999999
Q ss_pred cccccCCcCCCCCCCCceeecccccCcc-cCchhccCCCCCCEEEccCCcCCcCCCccccCCCCC--CEEEccCCcc--c
Q 036593 125 NITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNL--ESLALGTNNL--S 199 (574)
Q Consensus 125 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~ 199 (574)
.+. .+|.. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+.. ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 55555 89999999999999986 467889999999999999998875 457777888 9999999988 6
Q ss_pred ccCchhhcccC-CCcEEEcccCcccccCCchhhcCCCCcCeeeccccc-------ceecCCcCccCCCCccEEeCCCCce
Q 036593 200 GLIPPAIFNIS-TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINN-------LIGTIPDSLTNASKLIGLDLGSNSF 271 (574)
Q Consensus 200 ~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~ 271 (574)
...+..+..+. ....+++++|.+.+.++......+++|+.+++++|. +....+ .+..+++|+.++++++.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 67777776654 234567778887777777666678999999998875 333333 577888899999988877
Q ss_pred eecCCCCcc---CCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhc--cccceEE
Q 036593 272 SGHIPNTFG---NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFS--ASLQSFY 346 (574)
Q Consensus 272 ~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~l~ 346 (574)
.+..+..+. ..++|++|++++|.+....... .+......++.|+.++++++.+ ......+.... .+++.++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~---~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR---DFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC---CCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccc---hhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence 643222111 2458889999888876321111 0000116778888888888877 33324443332 1366666
Q ss_pred eccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccC
Q 036593 347 AYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCL 426 (574)
Q Consensus 347 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~ 426 (574)
++++.+..... +..+++|++|++++|.+++..+..+..+++|++|++++|++++. + .+|..+
T Consensus 309 l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~---------------~~~~~~ 370 (520)
T 2z7x_B 309 VSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-S---------------KIAEMT 370 (520)
T ss_dssp EESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH-H---------------HHHHHH
T ss_pred cCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc-c---------------cchHHH
Confidence 66665542211 13555555555555555554455555555555555555554420 0 122334
Q ss_pred cCCCCCCeEECCCCeecccCC-ccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCC
Q 036593 427 ASLTSLRELRLGSNKLTSSIP-SSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLE 505 (574)
Q Consensus 427 ~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 505 (574)
..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+. ++|++|++++|++. .++..+.++++|+
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ 447 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCC
Confidence 445555555555555544222 2344445555555555555433333222 44555555555554 3333333455555
Q ss_pred EeeCCCCcccccCCc-cccCCcCCCeeeCCCCccc
Q 036593 506 TLSLASNQFQGPIPE-SVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 506 ~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~~~ 539 (574)
+|++++|+++. +|. .+..+++|+.|++++|++.
T Consensus 448 ~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 448 ELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp EEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCcCCc-cCHHHhccCCcccEEECcCCCCc
Confidence 55555555542 222 2444455555555555544
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.6e-41 Score=361.92 Aligned_cols=499 Identities=22% Similarity=0.202 Sum_probs=313.4
Q ss_pred EEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcc
Q 036593 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNI 126 (574)
Q Consensus 47 l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 126 (574)
+++++.+++ .+|..+. +++++|+|++|.+.+..+.+|.++++|++|+|++|++.++.+.+|.++++|++|+|++|++
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 445555554 2443332 3555566666555544445555566666666665555555555555566666666666555
Q ss_pred cccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcC-CCccccCCCCCCEEEccCCcccccCchh
Q 036593 127 TGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ-IPTEIGNLQNLESLALGTNNLSGLIPPA 205 (574)
Q Consensus 127 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 205 (574)
....+.+|.++++|++|++++|.+.+..+..|+++++|++|++++|.+... .+..+..+++|++|++++|.+....+..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 544444455555666666655555544334455555666666655555432 3444555555666666655555554444
Q ss_pred hcccCCC----cEEEcccCcccc-----------------------cCCchhhcCCCCcCeeeccccc------ceecCC
Q 036593 206 IFNISTI----RVLNLHSNQFSG-----------------------RLPSTIGHSLPNIEYLTLAINN------LIGTIP 252 (574)
Q Consensus 206 l~~~~~L----~~L~l~~~~~~~-----------------------~~~~~~~~~l~~L~~L~l~~~~------~~~~~~ 252 (574)
+..+.++ ..++++.+.+.. .........+..++...+.... +.....
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 4433322 234444444431 1111112223333333222111 011111
Q ss_pred cCccCCCCccEEeCCCCce---eecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCC
Q 036593 253 DSLTNASKLIGLDLGSNSF---SGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGG 329 (574)
Q Consensus 253 ~~~~~~~~L~~L~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 329 (574)
..+.....+....+..+.. .......+....+++.+.+..+.+.... .+.....++.|++.++.+..
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~----------~~~~~~~L~~L~l~~~~~~~ 342 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK----------DFSYNFGWQHLELVNCKFGQ 342 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG----------GGGSCCCCSEEEEESCEESS
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc----------ccccchhhhhhhcccccccC
Confidence 2222233333333222111 1123334555666777777666554331 24556678888888776665
Q ss_pred CCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcc--cCCcCccccCCCCeEeccCCcccccC---
Q 036593 330 ILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNG--TIPTSVGTLQQLQGLSLEDNNLEGSI--- 404 (574)
Q Consensus 330 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~--- 404 (574)
..... ...++.+.+..+...... ....+++|+.++++.|.+.. ..+..+..+.+|+.+++..+......
T Consensus 343 ~~~~~----l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~ 416 (635)
T 4g8a_A 343 FPTLK----LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNF 416 (635)
T ss_dssp CCCCB----CTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCC
T ss_pred cCccc----chhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccc
Confidence 44332 236777777776655332 24467888888888887753 23445566788888888887655422
Q ss_pred --CCCCceEEccCCeeeecCC-ccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcce-ecCCccccCCCCC
Q 036593 405 --PYDLCHLELNGNKLSGHIP-PCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN-DSLPSNVQKLKVL 480 (574)
Q Consensus 405 --~~~l~~l~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~~~~l~~L 480 (574)
...++.+++..++.....+ ..+..+++++.++++.|.+....+..+..+++|++|++++|... ...+..+..+++|
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence 2457788888877665443 45778899999999999998888888899999999999999754 3567788999999
Q ss_pred CEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccC-CCCCeEeccC
Q 036593 481 RVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEAL-SHLKQFNVSQ 559 (574)
Q Consensus 481 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~l~l~~ 559 (574)
++|++++|++.+..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++....|+.|..+ ++|+.|++++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 999999999998888899999999999999999998888889999999999999999998888889888 5899999999
Q ss_pred Ccccc
Q 036593 560 NMLEG 564 (574)
Q Consensus 560 n~~~~ 564 (574)
|++.-
T Consensus 577 Np~~C 581 (635)
T 4g8a_A 577 NDFAC 581 (635)
T ss_dssp CCBCC
T ss_pred CCCcc
Confidence 98763
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9e-40 Score=348.43 Aligned_cols=486 Identities=22% Similarity=0.231 Sum_probs=366.6
Q ss_pred EEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeeccccc
Q 036593 70 SLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNV 149 (574)
Q Consensus 70 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 149 (574)
+.+.++-.++ .+|..+. +++++|+|++|++++..+.+|.++++|++|++++|.+..+.+.+|.++++|++|++++|.
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 3455544443 4565443 479999999999998888999999999999999999997778889999999999999999
Q ss_pred CcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCccccc-CchhhcccCCCcEEEcccCcccccCCc
Q 036593 150 IDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL-IPPAIFNISTIRVLNLHSNQFSGRLPS 228 (574)
Q Consensus 150 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~ 228 (574)
+.+..+..|.++++|++|++++|.+....+..|+++++|++|++++|.+... .+..+..+++|++|++++|.+.+..+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 9866667899999999999999999987778899999999999999998753 567788999999999999998855555
Q ss_pred hhhcCCC----CcCeeecccccceecCCcCccCCCCccEEeCCCCceee-cCCCCccCCCcCceEEccCCccccc-----
Q 036593 229 TIGHSLP----NIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSG-HIPNTFGNLRHLNVLSIRTNNLTTE----- 298 (574)
Q Consensus 229 ~~~~~l~----~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~----- 298 (574)
.+. .+. ....++++.+.+....+..+. ...+..+++.++.... ..+..+..++.++...+..+.....
T Consensus 192 ~l~-~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 192 DLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGH-HHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred ccc-chhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 443 332 344677887777655444333 3345666666553321 1112233333333333221110000
Q ss_pred -CCC-------------------CccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCc
Q 036593 299 -SSS-------------------ADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPK 358 (574)
Q Consensus 299 -~~~-------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 358 (574)
... .........+..+.+++.+.+.++.+..... + .....++.+.+.++.+....+
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~-~~~~~L~~L~l~~~~~~~~~~- 345 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--F-SYNFGWQHLELVNCKFGQFPT- 345 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--G-GSCCCCSEEEEESCEESSCCC-
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--c-ccchhhhhhhcccccccCcCc-
Confidence 000 0000112234455677777777665543322 1 122378888888888765433
Q ss_pred cccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccC--------CCCCceEEccCCeeeecCCccCcCCC
Q 036593 359 EIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSI--------PYDLCHLELNGNKLSGHIPPCLASLT 430 (574)
Q Consensus 359 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------~~~l~~l~l~~~~l~~~~~~~~~~~~ 430 (574)
..++.|+.+++..+...... ....+++|+.++++.|.+.... ...++.+++..+.... .+..+..++
T Consensus 346 --~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~ 420 (635)
T 4g8a_A 346 --LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLE 420 (635)
T ss_dssp --CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCT
T ss_pred --ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccc
Confidence 35677888888888765432 3457899999999999876421 2468899999998874 455678899
Q ss_pred CCCeEECCCCeecccC-CccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCccc-ccCcccccCCCCCCEee
Q 036593 431 SLRELRLGSNKLTSSI-PSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS-GNIPSTIGALVDLETLS 508 (574)
Q Consensus 431 ~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~ 508 (574)
+|+.+++..+...... ...+..+++++.++++.|.+....+..+..+++|+.|++++|.+. ...+..|..+++|++|+
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~ 500 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEE
Confidence 9999999999876553 456788999999999999999888889999999999999999854 45677899999999999
Q ss_pred CCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCC
Q 036593 509 LASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVK 569 (574)
Q Consensus 509 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~ 569 (574)
|++|++.+..|..|.++++|+.|+|++|++....+..|..+++|+.|++++|++++..|..
T Consensus 501 Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred CCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 9999999888999999999999999999999888888999999999999999999988764
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.3e-41 Score=359.08 Aligned_cols=437 Identities=21% Similarity=0.245 Sum_probs=337.1
Q ss_pred CCCcEEEccCCcccccCchhhcCCCCCCEEEc-cCCcCccCCCccccCC-CCCCEEE---c------------cCCccc-
Q 036593 66 SFLMSLDVTLNNFYGHLPNELGKLGRLKFISF-SFNKLSGSIPTWIGVL-SKLQIMS---L------------RNNNIT- 127 (574)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~l-~~L~~L~---l------------~~~~~~- 127 (574)
.+++.|+|+++.+.+.+|..++++++|++|+| ++|.+.+..+...... ..+.... + ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 7777665533211111 0000000 0 000000
Q ss_pred ----------ccCCcCCCCCCCCceeeccc--ccCcccCchhccCCCCCCEEEccCCcCCc-----------------CC
Q 036593 128 ----------GPIPNSLFNLSKLEMLQASF--NVIDGNIPSGIGNLSNLFDLDLRHNNLQD-----------------QI 178 (574)
Q Consensus 128 ----------~~~~~~~~~l~~L~~L~l~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----------------~~ 178 (574)
...+........++.+.+.. |.+.+ +|..++++++|++|++++|.++. ..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00011112233444444443 66765 88899999999999999999987 27
Q ss_pred Ccccc--CCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCc-ccc-cCCchhh------cCCCCcCeeecccccce
Q 036593 179 PTEIG--NLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQ-FSG-RLPSTIG------HSLPNIEYLTLAINNLI 248 (574)
Q Consensus 179 ~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~------~~l~~L~~L~l~~~~~~ 248 (574)
|..+. ++++|+.|++++|.+.+..|..+..+++|+.|++++|. +.+ .+|..+. ..+++|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88877 99999999999999998999999999999999999998 876 6776554 24569999999999998
Q ss_pred ecCCc--CccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCC-CcEEEccCC
Q 036593 249 GTIPD--SLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRK-LSYLVLDSN 325 (574)
Q Consensus 249 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~ 325 (574)
..+. .+..+++|++|++++|.+. ..| .+..+++|+.|++++|.+... +..+..+++ |+.|++++|
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~l---------p~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEI---------PEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCC---------CTTSCEECTTCCEEECCSS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccc---------hHHHhhccccCCEEECcCC
Confidence 6676 7999999999999999998 666 899999999999999998843 344778888 999999999
Q ss_pred CCCCCCChhhhhhccccceEEeccccccccCCccccCC--CCCcEEECcCCCCcccCCcC---cc--ccCCCCeEeccCC
Q 036593 326 PLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNL--RGLILLTLDFNDLNGTIPTS---VG--TLQQLQGLSLEDN 398 (574)
Q Consensus 326 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~ 398 (574)
.++.+ |..+..+ ++|+.|++++|.+.+..+.. +. .+++|++|++++|
T Consensus 630 ~L~~l--------------------------p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 630 KLKYI--------------------------PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp CCCSC--------------------------CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred CCCcC--------------------------chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 88732 2233333 45889999999887654322 22 3457888888888
Q ss_pred cccccCCCCCceEEccCCeeeecCCcc-CcCCCCCCeEECCCCeecccCCccccC-------CCCCCeEeCCCCcceecC
Q 036593 399 NLEGSIPYDLCHLELNGNKLSGHIPPC-LASLTSLRELRLGSNKLTSSIPSSLWS-------LEYILEINLSSNSLNDSL 470 (574)
Q Consensus 399 ~~~~~~~~~l~~l~l~~~~l~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~-------~~~L~~L~L~~~~l~~~~ 470 (574)
+++ .+|.. +..+++|+.|++++|++.......+.. +++|++|+|++|.+. .+
T Consensus 684 ~L~-------------------~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 684 EIQ-------------------KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp CCC-------------------SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred cCC-------------------ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence 877 33333 457899999999999998333333332 239999999999998 56
Q ss_pred Ccccc--CCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCC------CcccccCCccccCCcCCCeeeCCCCcccccC
Q 036593 471 PSNVQ--KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLAS------NQFQGPIPESVGSLISLESLDLSGNNFSGKI 542 (574)
Q Consensus 471 ~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~------n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 542 (574)
|..+. .+++|+.|++++|.+.+ ++..+.++++|+.|+|++ |.+.+..|..+..+++|+.|++++|++. .+
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~I 821 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KV 821 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-cc
Confidence 66676 89999999999999996 677888999999999976 7788889999999999999999999995 77
Q ss_pred CcCcccCCCCCeEeccCCccccc
Q 036593 543 PKSLEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 543 ~~~l~~l~~L~~l~l~~n~~~~~ 565 (574)
|..+. ++|+.|++++|++...
T Consensus 822 p~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 822 DEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CSCCC--SSSCEEECCSCTTCEE
T ss_pred CHhhc--CCCCEEECCCCCCCcc
Confidence 87765 6999999999998654
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.6e-42 Score=362.63 Aligned_cols=435 Identities=19% Similarity=0.260 Sum_probs=344.3
Q ss_pred CCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCc------c------CCCccccCCCCCCEEEccCCcccccCCcC
Q 036593 66 SFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS------G------SIPTWIGVLSKLQIMSLRNNNITGPIPNS 133 (574)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 133 (574)
.+++.|+|+++.+.+.+|.+++++++|++|++++|.+. + .+|... +.+|+ ++++++.+....+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 58899999999999999999999999999999999752 1 122222 33455 566555554443333
Q ss_pred CC-------------------CCCCCceeecc--cccCcccCchhccCCCCCCEEEccCCcCCcC---------------
Q 036593 134 LF-------------------NLSKLEMLQAS--FNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ--------------- 177 (574)
Q Consensus 134 ~~-------------------~l~~L~~L~l~--~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--------------- 177 (574)
+. ....++.+.+. .|.+++ +|..++++++|++|++++|.++..
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 33 11222333332 456776 888899999999999999998864
Q ss_pred --CCcccc--CCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCc-ccc-cCCchhhc-----CCCCcCeeeccccc
Q 036593 178 --IPTEIG--NLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQ-FSG-RLPSTIGH-----SLPNIEYLTLAINN 246 (574)
Q Consensus 178 --~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~-----~l~~L~~L~l~~~~ 246 (574)
.|..+. ++++|++|++++|.+.+..|..+.++++|++|++++|. +.+ .+|..+.. .+++|+.|++++|.
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 788888 99999999999999988999999999999999999998 886 67877762 23899999999998
Q ss_pred ceecCCc--CccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCC-CcEEEcc
Q 036593 247 LIGTIPD--SLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRK-LSYLVLD 323 (574)
Q Consensus 247 ~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~ 323 (574)
+. ..+. .+..+++|++|++++|.+.+..| .+..+++|+.|++++|.+... +..+..+++ |++|+++
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~l---------p~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI---------PANFCGFTEQVENLSFA 385 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEEC---------CTTSEEECTTCCEEECC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccc---------cHhhhhhcccCcEEEcc
Confidence 88 5666 78889999999999999886677 788899999999999988743 334677777 8888888
Q ss_pred CCCCCCCCChhhhhhccccceEEeccccccccCCccccC--CCCCcEEECcCCCCcccCCcCcc-------ccCCCCeEe
Q 036593 324 SNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGN--LRGLILLTLDFNDLNGTIPTSVG-------TLQQLQGLS 394 (574)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~ 394 (574)
+|.++. +|..+.. +++|++|++++|.+.+..+..+. .+++|++|+
T Consensus 386 ~N~l~~--------------------------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 386 HNKLKY--------------------------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp SSCCSS--------------------------CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCcCcc--------------------------cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 887662 3333433 34899999999999988777777 677888888
Q ss_pred ccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCC-------CCCeEeCCCCcce
Q 036593 395 LEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLE-------YILEINLSSNSLN 467 (574)
Q Consensus 395 l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-------~L~~L~L~~~~l~ 467 (574)
+++|+++. ..+..+..+++|++|++++|+++......+.... +|++|++++|.+.
T Consensus 440 Ls~N~l~~------------------lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 440 LSNNQISK------------------FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp CCSSCCCS------------------CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred CcCCccCc------------------CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 88888772 2223456789999999999999844444444333 9999999999998
Q ss_pred ecCCcccc--CCCCCCEEeCCCCcccccCcccccCCCCCCEeeC------CCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 468 DSLPSNVQ--KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSL------ASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 468 ~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l------~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
.+|..+. .+++|+.|++++|++.+ +|..+.++++|++|++ ++|.+.+..|..+..+++|+.|++++|+++
T Consensus 502 -~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 502 -KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp -BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred -ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence 5666665 89999999999999996 7788899999999999 567788899999999999999999999995
Q ss_pred ccCCcCcccCCCCCeEeccCCcccc
Q 036593 540 GKIPKSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 540 ~~~~~~l~~l~~L~~l~l~~n~~~~ 564 (574)
.+|..+. ++|+.|++++|++..
T Consensus 580 -~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 580 -KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp -BCCSCCC--TTCCEEECCSCTTCE
T ss_pred -ccCHhHh--CcCCEEECcCCCCcc
Confidence 6777765 899999999998764
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.4e-41 Score=350.97 Aligned_cols=460 Identities=20% Similarity=0.231 Sum_probs=283.8
Q ss_pred EEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccC
Q 036593 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRN 123 (574)
Q Consensus 44 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 123 (574)
.++++++++++++ +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|++.+..|.+|.++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 4899999999995 666554 8999999999999887788999999999999999999988899999999999999999
Q ss_pred CcccccCCcCCCCCCCCceeecccccCcc-cCchhccCCCCCCEEEccCCcCCcCCCccccCCCCC--CEEEccCCcc--
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNL--ESLALGTNNL-- 198 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~-- 198 (574)
|.+. .+|.. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+... .+..+++| ++|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 9998 55655 89999999999999985 3457899999999999999988753 45555555 9999999988
Q ss_pred cccCchhhcccC-CCcEEEcccCcccccCCchhhcCCCCcCeeecccccce----ecCCcCccCCCCccEEeCCCCceee
Q 036593 199 SGLIPPAIFNIS-TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLI----GTIPDSLTNASKLIGLDLGSNSFSG 273 (574)
Q Consensus 199 ~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~ 273 (574)
....+..+..+. ..-.+++++|.+.+..+......+++|+.+++++|... ......+..++.|+.+++.++.+.+
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 667777776654 12245777777776666666667788888888876411 1112345667777777777666543
Q ss_pred cCCCC---ccCCCcCceEEccCCccccc-CCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhc--cccceEEe
Q 036593 274 HIPNT---FGNLRHLNVLSIRTNNLTTE-SSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFS--ASLQSFYA 347 (574)
Q Consensus 274 ~~~~~---l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~l~l 347 (574)
..... ....++|++|++++|.+... +... +......++.|+.+++..+.+ ......+.... .+++.+++
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~----~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREE----FTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC----CCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEE
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchh----hhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEc
Confidence 21100 11234788888888877632 2111 000014455555555555554 22222222221 23555555
Q ss_pred ccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCc
Q 036593 348 YECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLA 427 (574)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~ 427 (574)
+++.+..... ...+++|++|++++|.+++..+..+..+++|++|++++|++++.. ..+..+.
T Consensus 339 ~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------~~~~~~~ 400 (562)
T 3a79_B 339 SDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF----------------KVALMTK 400 (562)
T ss_dssp ESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT----------------HHHHTTT
T ss_pred cCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc----------------cchhhhc
Confidence 5555432111 134555555555555555544555555555555555555544210 1123344
Q ss_pred CCCCCCeEECCCCeeccc-CCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCE
Q 036593 428 SLTSLRELRLGSNKLTSS-IPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLET 506 (574)
Q Consensus 428 ~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 506 (574)
.+++|++|++++|++.+. ....+..+++|++|++++|.+.+..+..+. ++|++|++++|+++ .++..+.++++|++
T Consensus 401 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQE 477 (562)
T ss_dssp TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSE
T ss_pred CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCE
Confidence 555555555555555542 222344455555555555555433332222 35555555555554 23333334555555
Q ss_pred eeCCCCcccccCCcc-ccCCcCCCeeeCCCCccc
Q 036593 507 LSLASNQFQGPIPES-VGSLISLESLDLSGNNFS 539 (574)
Q Consensus 507 L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~~~ 539 (574)
|++++|+++ .+|.. +..+++|+.|++++|++.
T Consensus 478 L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 478 LNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp EECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred EECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 555555555 22322 445555555555555544
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=343.50 Aligned_cols=459 Identities=21% Similarity=0.260 Sum_probs=328.1
Q ss_pred cEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccc
Q 036593 69 MSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFN 148 (574)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 148 (574)
++|++++|.+. .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 67999999987 5676555 89999999999999888888999999999999999998777888999999999999999
Q ss_pred cCcccCchhccCCCCCCEEEccCCcCCc-CCCccccCCCCCCEEEccCCcccccCchhhcccCCC--cEEEcccCcc--c
Q 036593 149 VIDGNIPSGIGNLSNLFDLDLRHNNLQD-QIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTI--RVLNLHSNQF--S 223 (574)
Q Consensus 149 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~ 223 (574)
.+. .+|.. .+++|++|++++|.+.. ..|..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 987 55654 78999999999998876 356788999999999999988765 456677777 8888888887 5
Q ss_pred ccCCchhhcCCC-CcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCC
Q 036593 224 GRLPSTIGHSLP-NIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSA 302 (574)
Q Consensus 224 ~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 302 (574)
+..|..+. .+. ....++++++.+.... ....+..+++|+.+++++|...... .
T Consensus 154 ~~~~~~l~-~l~~~~l~l~l~~n~~~~~~-----------------------~~~~~~~l~~L~~L~l~~n~~~~~~--~ 207 (520)
T 2z7x_B 154 KEDPEGLQ-DFNTESLHIVFPTNKEFHFI-----------------------LDVSVKTVANLELSNIKCVLEDNKC--S 207 (520)
T ss_dssp SCCTTTTT-TCCEEEEEEECCSSSCCCCC-----------------------CCCCCTTCSEEEECCEEECCSTTTT--H
T ss_pred cccccccc-ccccceEEEEeccCcchhhh-----------------------hhhhhhcccceeecccccccccccc--c
Confidence 45554433 222 1223334444332211 1122334444444444444300000 0
Q ss_pred ccccccccccCCCCCcEEEccCCCCCCCCChhhhh--hccccceEEeccccccccCCccc-----cCCCCCcEEECcCCC
Q 036593 303 DQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGN--FSASLQSFYAYECKLGGSIPKEI-----GNLRGLILLTLDFND 375 (574)
Q Consensus 303 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~ 375 (574)
........+..+++|+.|+++++.+++........ ..++++.+++++|.+.+.+|..+ ..+++|+.++++.|.
T Consensus 208 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~ 287 (520)
T 2z7x_B 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287 (520)
T ss_dssp HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred eeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence 00001123445555555555554443221111110 11256666666666665566655 677777777777777
Q ss_pred CcccCCcCcccc---CCCCeEeccCCcccccC----CCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecc--cC
Q 036593 376 LNGTIPTSVGTL---QQLQGLSLEDNNLEGSI----PYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS--SI 446 (574)
Q Consensus 376 ~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~----~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~ 446 (574)
+ ......+..+ .+|++|++++|++.... ...+++|++++|.+++..+..+..+++|++|++++|++.+ ..
T Consensus 288 ~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 366 (520)
T 2z7x_B 288 F-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366 (520)
T ss_dssp C-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred e-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc
Confidence 6 2222333333 56777777777766432 2467778888888877788889999999999999999986 34
Q ss_pred CccccCCCCCCeEeCCCCcceecCC-ccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCC
Q 036593 447 PSSLWSLEYILEINLSSNSLNDSLP-SNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL 525 (574)
Q Consensus 447 ~~~~~~~~~L~~L~L~~~~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~ 525 (574)
+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+. ++|++|++++|+++ .+|..+..+
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l 443 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKL 443 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGC
T ss_pred hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcC
Confidence 5678899999999999999987444 4578899999999999999866665543 79999999999999 788877799
Q ss_pred cCCCeeeCCCCcccccCCc-CcccCCCCCeEeccCCccccccC
Q 036593 526 ISLESLDLSGNNFSGKIPK-SLEALSHLKQFNVSQNMLEGEIP 567 (574)
Q Consensus 526 ~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~l~l~~n~~~~~~p 567 (574)
++|+.|++++|++.. +|. .|..+++|++|++++|+++...|
T Consensus 444 ~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 444 EALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 999999999999995 555 48999999999999999987654
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.2e-38 Score=318.91 Aligned_cols=393 Identities=18% Similarity=0.178 Sum_probs=214.8
Q ss_pred CEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcc-cCchhccCCCCCCEEEccC
Q 036593 93 KFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRH 171 (574)
Q Consensus 93 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~ 171 (574)
+.++.+++.+. .+|. + .++|++|++++|.+.+..+..+.++++|++|++++|.+.+ ..+..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45666666666 4444 2 2678888888888876667778888888888888877653 3355677778888888888
Q ss_pred CcCCcCCCccccCCCCCCEEEccCCcccccCchh--hcccCCCcEEEcccCcccccCCchhhcCCCCcCeeeccccccee
Q 036593 172 NNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPA--IFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIG 249 (574)
Q Consensus 172 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 249 (574)
|.+....+..+.++++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..|..++..+++|++|++++|.+.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~- 167 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK- 167 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS-
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc-
Confidence 7777666777777777777777777776533333 6666777777777776664444443334555555555554444
Q ss_pred cCCcCccCCCCccEEeCCCCceeecCCCCccCC--CcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCC
Q 036593 250 TIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL--RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327 (574)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 327 (574)
...+..+..+ ++|+.+++++|.+.........+.....+..+++|++|++++|.+
T Consensus 168 -----------------------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 168 -----------------------SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp -----------------------CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred -----------------------ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence 3333334333 455555555555544332221112222234456666666666666
Q ss_pred CCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCC
Q 036593 328 GGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD 407 (574)
Q Consensus 328 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 407 (574)
++..+..+... ...++|+.+++++|...+... ..+.+.+
T Consensus 225 ~~~~~~~~~~~----------------------~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~----- 263 (455)
T 3v47_A 225 KESMAKRFFDA----------------------IAGTKIQSLILSNSYNMGSSF--------------GHTNFKD----- 263 (455)
T ss_dssp CHHHHHHHHHH----------------------TTTCCEEEEECTTCTTTSCCT--------------TCCSSCC-----
T ss_pred cccchhhhhcc----------------------ccccceeeEeecccccccccc--------------chhhhcc-----
Confidence 54333333221 112445555555544322100 0000000
Q ss_pred CceEEccCCeeeecCCccCc--CCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeC
Q 036593 408 LCHLELNGNKLSGHIPPCLA--SLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDL 485 (574)
Q Consensus 408 l~~l~l~~~~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l 485 (574)
..+..+. ..++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 264 -------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 330 (455)
T 3v47_A 264 -------------PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330 (455)
T ss_dssp -------------CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred -------------CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence 0001111 1244555555555555444555555555555555555555544555555555555555
Q ss_pred CCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccc
Q 036593 486 SRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 486 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~ 565 (574)
++|.+.+..+..+.++++|++|++++|++++..+..|..+++|+.|++++|++....+..|..+++|+.|++++|++++.
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 55555544445555555555555555555555455555555555555555555544444455555555555555555555
Q ss_pred cC
Q 036593 566 IP 567 (574)
Q Consensus 566 ~p 567 (574)
.|
T Consensus 411 ~~ 412 (455)
T 3v47_A 411 CP 412 (455)
T ss_dssp TT
T ss_pred CC
Confidence 55
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.6e-37 Score=314.19 Aligned_cols=386 Identities=20% Similarity=0.221 Sum_probs=247.2
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCcc-CCCccccCCCCCCEEEccCC
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSG-SIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~ 124 (574)
.+++++.+++ .+|. +. ++|++|+|++|.+.+..+..|.++++|++|++++|.+.+ ..+..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 5677777776 4555 33 789999999999988778889999999999999998863 44678999999999999999
Q ss_pred cccccCCcCCCCCCCCceeecccccCcccCchh--ccCCCCCCEEEccCCcCCcCCCcc-ccCCCCCCEEEccCCccccc
Q 036593 125 NITGPIPNSLFNLSKLEMLQASFNVIDGNIPSG--IGNLSNLFDLDLRHNNLQDQIPTE-IGNLQNLESLALGTNNLSGL 201 (574)
Q Consensus 125 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~ 201 (574)
.+.+..|..+.++++|++|++++|.+.+..+.. +.++++|++|++++|.+....+.. +..+++|++|++++|.+...
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 988777888999999999999999887544444 788889999999998888766655 78888888888888888777
Q ss_pred Cchhhccc--CCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCc
Q 036593 202 IPPAIFNI--STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTF 279 (574)
Q Consensus 202 ~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 279 (574)
.+..+..+ .+|+.|+++++.+.+..+..+. . .....+..+++|++|++++|.+.+..+..+
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~------------~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG------------W-----EKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT------------H-----HHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred ChhhhhccccccccccccccCcccccchhhcc------------c-----cccccccccceeeeEecCCCcccccchhhh
Confidence 66666655 5677777777765522111110 0 000112344566666666666654444433
Q ss_pred cCC---CcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccC
Q 036593 280 GNL---RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSI 356 (574)
Q Consensus 280 ~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 356 (574)
... ++|+.|++++|........ .+.+... .
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~~----------------------~~~~~~~-------------------------~ 265 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSFG----------------------HTNFKDP-------------------------D 265 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCTT----------------------CCSSCCC-------------------------C
T ss_pred hccccccceeeEeeccccccccccc----------------------hhhhccC-------------------------c
Confidence 322 4555555555543321100 0001100 0
Q ss_pred Ccccc--CCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCe
Q 036593 357 PKEIG--NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRE 434 (574)
Q Consensus 357 ~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~ 434 (574)
+..+. ..++|+.+++++|.+.+..+..+..+++|++|++++|++++ ..+..+..+++|++
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK------------------IDDNAFWGLTHLLK 327 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE------------------ECTTTTTTCTTCCE
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc------------------cChhHhcCcccCCE
Confidence 00011 22456666666666665555556666666666666665553 23344555666666
Q ss_pred EECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcc
Q 036593 435 LRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQF 514 (574)
Q Consensus 435 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 514 (574)
|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++....+..+..+++|++|++++|++
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 66666666555555566666666666666666555555566666666666666666554444555666666666666666
Q ss_pred ccc
Q 036593 515 QGP 517 (574)
Q Consensus 515 ~~~ 517 (574)
.+.
T Consensus 408 ~~~ 410 (455)
T 3v47_A 408 DCS 410 (455)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.7e-38 Score=326.70 Aligned_cols=460 Identities=21% Similarity=0.270 Sum_probs=315.2
Q ss_pred CCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCcee
Q 036593 64 NLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEML 143 (574)
Q Consensus 64 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 143 (574)
.+...++++++++.+.+ +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+.+..|.+|.++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 34455899999999874 676554 899999999999998888899999999999999999997778889999999999
Q ss_pred ecccccCcccCchhccCCCCCCEEEccCCcCCcC-CCccccCCCCCCEEEccCCcccccCchhhcccCCC--cEEEcccC
Q 036593 144 QASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ-IPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTI--RVLNLHSN 220 (574)
Q Consensus 144 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~ 220 (574)
++++|.+. .+|.. .+++|++|++++|.+... .+..+.++++|++|++++|.+... .+..+++| +.|++++|
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 99999998 56655 899999999999998864 357899999999999999988753 45555666 99999988
Q ss_pred cc--cccCCchhhcCCC-CcCeeecccccceecCC-cCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCccc
Q 036593 221 QF--SGRLPSTIGHSLP-NIEYLTLAINNLIGTIP-DSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLT 296 (574)
Q Consensus 221 ~~--~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 296 (574)
.+ .+..+..+. .+. ..-.++++.|.+....+ ..+..+++|+.+++++|. ..
T Consensus 180 ~l~~~~~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~------------------------~~ 234 (562)
T 3a79_B 180 SYHIKGGETESLQ-IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND------------------------EN 234 (562)
T ss_dssp SCCCCSSSCCEEE-ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS------------------------TT
T ss_pred cccccccCccccc-ccCcceEEEEecCccchhhhhhhcccccceEEEecccccc------------------------cc
Confidence 87 545554443 222 11123444443332111 122334445555555442 10
Q ss_pred ccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhh--hccccceEEeccccccccCCccc-----cCCCCCcEE
Q 036593 297 TESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGN--FSASLQSFYAYECKLGGSIPKEI-----GNLRGLILL 369 (574)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~-----~~l~~L~~L 369 (574)
... .......+..++.|+.+++.++.+.+........ ...+++++++++|.+.+.+|..+ ..++.|+.+
T Consensus 235 ~~~----l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~ 310 (562)
T 3a79_B 235 CQR----LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310 (562)
T ss_dssp HHH----HHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEE
T ss_pred cch----HHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehh
Confidence 000 0001122334444444444443332111100000 01155555555555554444444 444555555
Q ss_pred ECcCCCCcccCC-cCcc---ccCCCCeEeccCCccccc----CCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCe
Q 036593 370 TLDFNDLNGTIP-TSVG---TLQQLQGLSLEDNNLEGS----IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNK 441 (574)
Q Consensus 370 ~l~~~~~~~~~~-~~~~---~~~~L~~L~l~~~~~~~~----~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 441 (574)
++..+.+ ..+ ..+. ...+|++|++++|++... ....++++++++|.+++..+..+..+++|++|++++|+
T Consensus 311 ~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 311 HVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp EEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred hccccee--ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 5544444 111 1111 124566666666665432 22456677777777776777888999999999999999
Q ss_pred eccc--CCccccCCCCCCeEeCCCCccee-cCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccC
Q 036593 442 LTSS--IPSSLWSLEYILEINLSSNSLND-SLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI 518 (574)
Q Consensus 442 ~~~~--~~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 518 (574)
+++. .+..+..+++|++|++++|.+.+ .....+..+++|++|++++|.+.+..+..+. ++|++|++++|+++ .+
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~i 465 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SI 465 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CC
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-cc
Confidence 9853 34568899999999999999987 4445688899999999999999865554443 79999999999999 67
Q ss_pred CccccCCcCCCeeeCCCCcccccCCcC-cccCCCCCeEeccCCccccccC
Q 036593 519 PESVGSLISLESLDLSGNNFSGKIPKS-LEALSHLKQFNVSQNMLEGEIP 567 (574)
Q Consensus 519 ~~~l~~~~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~l~l~~n~~~~~~p 567 (574)
|..+..+++|+.|++++|+++. +|.. |..+++|+.+++++|++.+..|
T Consensus 466 p~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 466 PKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred ChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 7776799999999999999994 5554 9999999999999999987654
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.7e-35 Score=297.21 Aligned_cols=418 Identities=22% Similarity=0.295 Sum_probs=174.4
Q ss_pred CcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEc
Q 036593 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 121 (574)
.++++++++++.+ +.+|+.+.++++|++|++++|.+.+.+|..++++.+|+++++.+|.. .++++|++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 4566677777666 46666677777777777777766666666666666543222222211 22355555
Q ss_pred cCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCccccc
Q 036593 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL 201 (574)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 201 (574)
++|.+. ..|.. .++|++|++++|.+.+ +|.. +++|++|++++|.+... +. + .++|++|++++|.+..
T Consensus 79 ~~~~l~-~lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~-~--~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 79 NNLGLS-SLPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp TTSCCS-CCCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEECCSSCCSS-
T ss_pred cCCccc-cCCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cC-C--CCCCCEEECcCCCCCC-
Confidence 555544 22221 2455555555555542 3321 24555555555554421 11 0 1455555555555553
Q ss_pred CchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccC
Q 036593 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281 (574)
Q Consensus 202 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 281 (574)
+| .+..+++|++|++++|.+. .+|. ..++|++|++++|.+.. .+ .+..+++|++|++++|.+.+ .+..
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~-~lp~----~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--- 213 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--- 213 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---
T ss_pred Cc-ccCCCCCCCEEECCCCcCc-ccCC----CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---
Confidence 33 3555555666666555554 2332 12355555555555543 22 35555666666666665542 2221
Q ss_pred CCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCcccc
Q 036593 282 LRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIG 361 (574)
Q Consensus 282 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 361 (574)
.++|+.|++++|.+...+ .+..+++|++|++++|.++... .
T Consensus 214 ~~~L~~L~l~~n~l~~lp----------~~~~l~~L~~L~l~~N~l~~l~--------------------------~--- 254 (454)
T 1jl5_A 214 PLSLESIVAGNNILEELP----------ELQNLPFLTTIYADNNLLKTLP--------------------------D--- 254 (454)
T ss_dssp CTTCCEEECCSSCCSSCC----------CCTTCTTCCEEECCSSCCSSCC--------------------------S---
T ss_pred cCcccEEECcCCcCCccc----------ccCCCCCCCEEECCCCcCCccc--------------------------c---
Confidence 135666666666555321 1445566666666666554321 1
Q ss_pred CCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccc--cCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCC
Q 036593 362 NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG--SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGS 439 (574)
Q Consensus 362 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 439 (574)
.+++|++|++++|.+.+. +. ..++|++|++++|++++ ..|..++.+++++|.+++. +. ..++|++|++++
T Consensus 255 ~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~ 326 (454)
T 1jl5_A 255 LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSN 326 (454)
T ss_dssp CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCS
T ss_pred cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCC
Confidence 113445555555544431 11 12445555555555544 3344455555555544431 11 124677777777
Q ss_pred CeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccc--cCcccccCCCCCCEeeCCCCccccc
Q 036593 440 NKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSG--NIPSTIGALVDLETLSLASNQFQGP 517 (574)
Q Consensus 440 n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~ 517 (574)
|++.+ .+.. +++|++|++++|.+.. +|. .+++|++|++++|++.+ ..|..+ ..|. .|...+.
T Consensus 327 N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l------~~L~--~n~~~~~ 390 (454)
T 1jl5_A 327 NKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESV------EDLR--MNSHLAE 390 (454)
T ss_dssp SCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTC------CEEE--CCC----
T ss_pred Ccccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHH------Hhhh--hcccccc
Confidence 77764 3332 4677777777777653 333 35677777777777764 233322 2222 2333333
Q ss_pred CCccccCCcCCCeeeCCCCcccc--cCCcCcccCCCCCeEeccCCccccccCC
Q 036593 518 IPESVGSLISLESLDLSGNNFSG--KIPKSLEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 518 ~~~~l~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
.|. .+++|+.|++++|++.+ .+| ++++.|++.+|.+.+.+|.
T Consensus 391 i~~---~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 391 VPE---LPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp -----------------------------------------------------
T ss_pred ccc---ccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCcccc
Confidence 333 23678888888888874 222 3577778888888777663
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-35 Score=299.11 Aligned_cols=390 Identities=25% Similarity=0.312 Sum_probs=172.6
Q ss_pred CCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceee
Q 036593 65 LSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQ 144 (574)
Q Consensus 65 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 144 (574)
.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..++++.+|+.+++++|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 35666666666666 56666666666666666666666666666666666666655555431 3456677
Q ss_pred cccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccc
Q 036593 145 ASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224 (574)
Q Consensus 145 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 224 (574)
++++.+.+ +|. -.++|++|++++|.+.. .+.. .++|++|++++|.+... +. + .++|++|++++|.+.
T Consensus 78 l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~-~--~~~L~~L~L~~n~l~- 144 (454)
T 1jl5_A 78 LNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGVSNNQLE- 144 (454)
T ss_dssp CTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEECCSSCCS-
T ss_pred ecCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cC-C--CCCCCEEECcCCCCC-
Confidence 77766652 333 12566777776666654 2321 35666666666655432 11 0 145666666665555
Q ss_pred cCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCcc
Q 036593 225 RLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQ 304 (574)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 304 (574)
.+| .+ ..+++|++|++++|.+.. .+.. .++|++|++++|.+.. .+ .+.
T Consensus 145 ~lp-~~-~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~------------------------ 192 (454)
T 1jl5_A 145 KLP-EL-QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQ------------------------ 192 (454)
T ss_dssp SCC-CC-TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCT------------------------
T ss_pred CCc-cc-CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-ccc------------------------
Confidence 244 22 245555555555554432 1111 1244444444444442 22 244
Q ss_pred ccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCc
Q 036593 305 WSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSV 384 (574)
Q Consensus 305 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 384 (574)
.+++|++|++++|.+++... .+.+++.+++++|.+. .+| .+..+++|++|++++|.+++.. .
T Consensus 193 --------~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~-~-- 254 (454)
T 1jl5_A 193 --------NLPFLTAIYADNNSLKKLPD-----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLP-D-- 254 (454)
T ss_dssp --------TCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC-S--
T ss_pred --------CCCCCCEEECCCCcCCcCCC-----CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccc-c--
Confidence 44455555555544443211 1124455555555444 344 3677888888888888877532 2
Q ss_pred cccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCC
Q 036593 385 GTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSN 464 (574)
Q Consensus 385 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~ 464 (574)
..++|++|++++|++++ + |.. +++|++|++++|.+++. +. ..++|++|++++|
T Consensus 255 -~~~~L~~L~l~~N~l~~-l------------------~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N 307 (454)
T 1jl5_A 255 -LPPSLEALNVRDNYLTD-L------------------PEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSN 307 (454)
T ss_dssp -CCTTCCEEECCSSCCSC-C------------------CCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSS
T ss_pred -cccccCEEECCCCcccc-c------------------Ccc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCC
Confidence 23678888888887764 1 111 23455555555544421 10 0134555555555
Q ss_pred cceecCCccccCC-CCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccc--c
Q 036593 465 SLNDSLPSNVQKL-KVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG--K 541 (574)
Q Consensus 465 ~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~--~ 541 (574)
.+.+.. .+ ++|++|++++|++.+ .+.. +++|++|++++|.++ .+|. .+++|+.|++++|++.. .
T Consensus 308 ~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ 374 (454)
T 1jl5_A 308 EIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPD 374 (454)
T ss_dssp CCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCC
T ss_pred cCCccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCC
Confidence 443311 11 345555555555442 2211 345555555555554 2333 23455555555555544 3
Q ss_pred CCcCcccC-------------CCCCeEeccCCcccc--ccCCC
Q 036593 542 IPKSLEAL-------------SHLKQFNVSQNMLEG--EIPVK 569 (574)
Q Consensus 542 ~~~~l~~l-------------~~L~~l~l~~n~~~~--~~p~~ 569 (574)
+|..+..+ ++|+.|++++|++++ .+|..
T Consensus 375 ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp CCTTCCEEECCC-------------------------------
T ss_pred ChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence 44444444 899999999999998 89865
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-34 Score=290.79 Aligned_cols=366 Identities=21% Similarity=0.214 Sum_probs=227.6
Q ss_pred CcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCc
Q 036593 76 NNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIP 155 (574)
Q Consensus 76 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (574)
.......+..++++++|++|++++|.+.+. | .+..+++|++|++++|.+.+. + +..+++|++|++++|.+.+. +
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C
T ss_pred cCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e
Confidence 333344455688889999999999888854 4 688889999999999888743 3 77888888888888888743 3
Q ss_pred hhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCC
Q 036593 156 SGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLP 235 (574)
Q Consensus 156 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 235 (574)
++++++|++|++++|.+... + +..+++|++|++++|.+... .+..+++|++|++++|...+.++ + ..++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~-~~l~ 170 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--V-TPQT 170 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--C-TTCT
T ss_pred --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--c-ccCC
Confidence 77888888888888877753 2 77778888888888877653 25667777777777764332321 1 1344
Q ss_pred CcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCC
Q 036593 236 NIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCR 315 (574)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (574)
+|+.|++++| .++.. + +..+++|+.|++++|.++..+ +..++
T Consensus 171 ~L~~L~ls~n------------------------~l~~l-~--l~~l~~L~~L~l~~N~l~~~~-----------l~~l~ 212 (457)
T 3bz5_A 171 QLTTLDCSFN------------------------KITEL-D--VSQNKLLNRLNCDTNNITKLD-----------LNQNI 212 (457)
T ss_dssp TCCEEECCSS------------------------CCCCC-C--CTTCTTCCEEECCSSCCSCCC-----------CTTCT
T ss_pred cCCEEECCCC------------------------cccee-c--cccCCCCCEEECcCCcCCeec-----------cccCC
Confidence 4555555444 44321 1 444455555555555544321 34445
Q ss_pred CCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEec
Q 036593 316 KLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSL 395 (574)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 395 (574)
+|++|++++|.++++ | +..+++|+.|++++|.+++.. ...+++|+.|++
T Consensus 213 ~L~~L~Ls~N~l~~i--------------------------p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l 261 (457)
T 3bz5_A 213 QLTFLDCSSNKLTEI--------------------------D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHC 261 (457)
T ss_dssp TCSEEECCSSCCSCC--------------------------C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEEC
T ss_pred CCCEEECcCCccccc--------------------------C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEec
Confidence 555555555544421 1 334455555555555554432 234455555555
Q ss_pred cCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCcccc
Q 036593 396 EDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQ 475 (574)
Q Consensus 396 ~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 475 (574)
+.+++ +.+++++|.+.+.+| +..+++|+.|++++|...+..+. ..++|+.|++++|
T Consensus 262 ~~n~L--------~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~----------- 317 (457)
T 3bz5_A 262 IQTDL--------LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN----------- 317 (457)
T ss_dssp TTCCC--------SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-----------
T ss_pred cCCCC--------CEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-----------
Confidence 54432 244445554443443 45678888888888876544442 2345555544443
Q ss_pred CCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeE
Q 036593 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQF 555 (574)
Q Consensus 476 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l 555 (574)
++|++|++++|++++. .++++++|+.|++++|++.+ ++.|..|++++|.+.+. ..+..|+.+
T Consensus 318 --~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l 379 (457)
T 3bz5_A 318 --PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKE 379 (457)
T ss_dssp --TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCB
T ss_pred --ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCcc
Confidence 5777888888877753 26777888888888887774 24566667777776643 345567777
Q ss_pred eccCCccccccCCC
Q 036593 556 NVSQNMLEGEIPVK 569 (574)
Q Consensus 556 ~l~~n~~~~~~p~~ 569 (574)
++++|+++|.||..
T Consensus 380 ~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 380 TLTNNSLTIAVSPD 393 (457)
T ss_dssp CCBTTBEEEECCTT
T ss_pred ccccCcEEEEcChh
Confidence 78888888887764
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.9e-34 Score=289.48 Aligned_cols=347 Identities=27% Similarity=0.393 Sum_probs=263.6
Q ss_pred cCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCE
Q 036593 111 GVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLES 190 (574)
Q Consensus 111 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 190 (574)
..+++++.|+++++.+. ..+ .+..+++|++|++++|.+.+. +. +.++++|++|++++|.+....+ +..+++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34678999999999887 444 478899999999999998744 44 8899999999999998875543 889999999
Q ss_pred EEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCc
Q 036593 191 LALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270 (574)
Q Consensus 191 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 270 (574)
|++++|.+.... .+..+++|++|++++|.+. .++. + ..+++|+.|++++ .+.. ...+..+++|++|++++|.
T Consensus 117 L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~-~~~~-~-~~l~~L~~L~l~~-~~~~--~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITDID--PLKNLTNLNRLELSSNTIS-DISA-L-SGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCCCG--GGTTCTTCSEEEEEEEEEC-CCGG-G-TTCTTCSEEEEEE-SCCC--CGGGTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCCh--HHcCCCCCCEEECCCCccC-CChh-h-ccCCcccEeecCC-cccC--chhhccCCCCCEEECcCCc
Confidence 999999887553 2788899999999999877 3432 3 3788888888853 3322 2236677778888887777
Q ss_pred eeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccc
Q 036593 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYEC 350 (574)
Q Consensus 271 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 350 (574)
+... ..+..+++|+.|++++|.+..... ++.+++|++|++++|.+++.
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----------~~~l~~L~~L~l~~n~l~~~-------------------- 236 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP----------LGILTNLDELSLNGNQLKDI-------------------- 236 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG----------GGGCTTCCEEECCSSCCCCC--------------------
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc----------ccccCCCCEEECCCCCcccc--------------------
Confidence 6533 236677777777777776654321 44566777777776655532
Q ss_pred cccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCC
Q 036593 351 KLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLT 430 (574)
Q Consensus 351 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~ 430 (574)
..+..+++|+.|++++|.+.+..+ +..+++|++|++++|++++ .+. +..++
T Consensus 237 -------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-------------------~~~-~~~l~ 287 (466)
T 1o6v_A 237 -------GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-------------------ISP-LAGLT 287 (466)
T ss_dssp -------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-------------------CGG-GTTCT
T ss_pred -------hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-------------------ccc-ccCCC
Confidence 235677888899999888876543 7778888888888887763 222 66788
Q ss_pred CCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCC
Q 036593 431 SLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLA 510 (574)
Q Consensus 431 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 510 (574)
+|++|++++|++.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 288 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAG 361 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence 99999999998875433 7788999999999998876654 67889999999999988854 467888999999999
Q ss_pred CCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 511 SNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 511 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
+|++.+..| +..+++|+.|++++|+++.
T Consensus 362 ~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 362 HNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCccCccch--hhcCCCCCEEeccCCcccC
Confidence 999886655 7888999999999998885
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2e-33 Score=286.51 Aligned_cols=347 Identities=27% Similarity=0.399 Sum_probs=222.7
Q ss_pred cCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCce
Q 036593 63 GNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEM 142 (574)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 142 (574)
..++++++|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 345688888888887753 44 37788888888888888875544 8888888888888888774333 778888888
Q ss_pred eecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcc
Q 036593 143 LQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222 (574)
Q Consensus 143 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 222 (574)
|++++|.+.+. +. +.++++|++|++++|.+... ..+..+++|++|++++ .+... ..+..+++|++|++++|.+
T Consensus 117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcC
Confidence 88888877643 33 77788888888888777643 3477777777777753 33222 2256666677777766665
Q ss_pred cccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCC
Q 036593 223 SGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSA 302 (574)
Q Consensus 223 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 302 (574)
. .++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+...
T Consensus 190 ~-~~~--------------------------~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---- 236 (466)
T 1o6v_A 190 S-DIS--------------------------VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI---- 236 (466)
T ss_dssp C-CCG--------------------------GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC----
T ss_pred C-CCh--------------------------hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc----
Confidence 4 221 23444555555555555543322 45556666666666655442
Q ss_pred ccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCc
Q 036593 303 DQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPT 382 (574)
Q Consensus 303 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 382 (574)
..+..+++|++|++++|.+.+.. .+..+++|++|++++|.+.+..+
T Consensus 237 ------~~l~~l~~L~~L~l~~n~l~~~~---------------------------~~~~l~~L~~L~l~~n~l~~~~~- 282 (466)
T 1o6v_A 237 ------GTLASLTNLTDLDLANNQISNLA---------------------------PLSGLTKLTELKLGANQISNISP- 282 (466)
T ss_dssp ------GGGGGCTTCSEEECCSSCCCCCG---------------------------GGTTCTTCSEEECCSSCCCCCGG-
T ss_pred ------hhhhcCCCCCEEECCCCccccch---------------------------hhhcCCCCCEEECCCCccCcccc-
Confidence 12455666666666666554321 13455666666666666654332
Q ss_pred CccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCC
Q 036593 383 SVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLS 462 (574)
Q Consensus 383 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 462 (574)
+..+++|++|++++|++++. +. +..+++|++|++++|++.+..+ +..+++|++|+++
T Consensus 283 -~~~l~~L~~L~L~~n~l~~~-------------------~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 283 -LAGLTALTNLELNENQLEDI-------------------SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp -GTTCTTCSEEECCSSCCSCC-------------------GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred -ccCCCccCeEEcCCCcccCc-------------------hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 55666677777766666521 11 4566677777777777664433 5566777777777
Q ss_pred CCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccc
Q 036593 463 SNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 463 ~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
+|.+.+. ..+..+++|+.|++++|++.+..+ +..+++|+.|++++|.+++
T Consensus 340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 7776554 346677777777777777765544 6677777777777777764
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-33 Score=285.80 Aligned_cols=357 Identities=17% Similarity=0.170 Sum_probs=209.2
Q ss_pred CccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCC
Q 036593 61 HLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKL 140 (574)
Q Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 140 (574)
.+.++++|++|++++|.+.+. | .+..+++|++|++++|.+.+. + ++.+++|++|++++|.+.+. + +..+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 345556666666666665532 3 466666666666666666543 2 55666666666666666532 2 5566666
Q ss_pred ceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccC
Q 036593 141 EMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSN 220 (574)
Q Consensus 141 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 220 (574)
++|++++|.+.+ ++ ++++++|++|++++|.+... .+..+++|++|++++|...+.. .+..+++|+.|++++|
T Consensus 109 ~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 666666666653 22 56666666666666666543 2566666666666666433222 3556667777777777
Q ss_pred cccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCC
Q 036593 221 QFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESS 300 (574)
Q Consensus 221 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 300 (574)
.+.+ ++ + ..+++|+.|++++|.+... .+..+++|++|++++|.+++ .| +..+++|+.|++++|.+...+
T Consensus 181 ~l~~-l~--l-~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 181 KITE-LD--V-SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp CCCC-CC--C-TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred ccce-ec--c-ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence 6663 33 2 2566777777777766543 36667778888888887775 33 677788888888888776542
Q ss_pred CCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccC
Q 036593 301 SADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTI 380 (574)
Q Consensus 301 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 380 (574)
...+++|+.|+++++ +++.+++++|.....+| +..+++|+.|++++|...+..
T Consensus 250 ----------~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 250 ----------VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp ----------CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred ----------HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence 445677777777665 34445555555443333 345555666666655543332
Q ss_pred CcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEe
Q 036593 381 PTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIN 460 (574)
Q Consensus 381 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 460 (574)
+. ..++|+.|+ +..+++|++|++++|++++. .+..+++|++|+
T Consensus 303 ~~---~~~~L~~L~-------------------------------l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~ 345 (457)
T 3bz5_A 303 DC---QAAGITELD-------------------------------LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLS 345 (457)
T ss_dssp EC---TTCCCSCCC-------------------------------CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEE
T ss_pred cc---CCCcceEec-------------------------------hhhcccCCEEECCCCccccc---ccccCCcCcEEE
Confidence 21 122333332 33445666666666666542 255666666666
Q ss_pred CCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCcc
Q 036593 461 LSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPES 521 (574)
Q Consensus 461 L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 521 (574)
+++|.+.+ ++.|..|++++|.+.+. ..+..|+.+++++|++++.+|..
T Consensus 346 l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 346 CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 66666643 23455555666655532 23455666667777766666544
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=287.13 Aligned_cols=320 Identities=23% Similarity=0.250 Sum_probs=201.1
Q ss_pred CEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCC
Q 036593 189 ESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGS 268 (574)
Q Consensus 189 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 268 (574)
+.++.+++.+. .+|..+ .++++.|++++|.+.+..+..+. .+++|++|++++|.+....+..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45666665554 233333 24677777777777643343333 677777777777777766666777777777777777
Q ss_pred CceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEec
Q 036593 269 NSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAY 348 (574)
Q Consensus 269 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 348 (574)
|.+....+..|.++++|++|++++|.+...... .+..+++|++|++++|.+....+..+..+. +|+.|+++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~ 160 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDY--------MFQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLE 160 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT--------TTTTCTTCCEEEECCTTCCEECTTSSTTCT-TCCEEEEE
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChh--------HccccccCCEEECCCCccceeChhhccCCC-CCCEEECC
Confidence 777655555666777777777777766654322 256667777777777766655554444433 56666666
Q ss_pred cccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcC
Q 036593 349 ECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLAS 428 (574)
Q Consensus 349 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~ 428 (574)
+|.+....+..+..+++|+.|++++|.+.+.....+..+++|++|++++|+..+. ++.....
T Consensus 161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~------------------~~~~~~~ 222 (477)
T 2id5_A 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT------------------MTPNCLY 222 (477)
T ss_dssp SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE------------------ECTTTTT
T ss_pred CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc------------------cCccccc
Confidence 6655544444455566666666666665555555555566666666655554432 2222223
Q ss_pred CCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEee
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLS 508 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 508 (574)
..+|++|++++|.+++.....+..+++|++|++++|.+.+..+..+..+++|++|++++|++....+..|.++++|++|+
T Consensus 223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence 34677777777777644445566677777777777777666666666777777777777777666666677777777777
Q ss_pred CCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 509 LASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 509 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+++|.++...+..|..+++|+.|++++|++.
T Consensus 303 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 7777777555556667777777777777765
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-33 Score=271.95 Aligned_cols=274 Identities=29% Similarity=0.467 Sum_probs=249.0
Q ss_pred hcccccCCCCccc--eeeeeecCCC--CcEEEEEcCCCCCcc--ccCCCccCCCCCcEEEccC-CcccccCchhhcCCCC
Q 036593 19 LLYLLKTTNMRLS--WVGISCDSRH--QRVKALNLSGMGLGG--TIPPHLGNLSFLMSLDVTL-NNFYGHLPNELGKLGR 91 (574)
Q Consensus 19 ~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~l~l~~~~~~~--~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~ 91 (574)
.++.|..+.++|. |.|+.|+... .++++|+++++.+.+ .+|..+.++++|++|++++ |.+.+.+|..|.++++
T Consensus 23 ~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~ 102 (313)
T 1ogq_A 23 TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102 (313)
T ss_dssp GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTT
T ss_pred cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCC
Confidence 4678988888998 9999998644 799999999999998 8999999999999999995 8888899999999999
Q ss_pred CCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCC-CCCEEEcc
Q 036593 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLS-NLFDLDLR 170 (574)
Q Consensus 92 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~ 170 (574)
|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.+++ +|++|+++
T Consensus 103 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp CSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred CCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc
Confidence 99999999999989999999999999999999999988899999999999999999999888999999998 99999999
Q ss_pred CCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceec
Q 036593 171 HNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGT 250 (574)
Q Consensus 171 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 250 (574)
+|.+....+..+..++ |++|++++|.+....+..+..+++|+.|++++|.+.+..+. + ..+++|++|++++|.+...
T Consensus 183 ~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~l~~L~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-GLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp SSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C-CCCTTCCEEECCSSCCEEC
T ss_pred CCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c-cccCCCCEEECcCCcccCc
Confidence 9999888888898887 99999999999988899999999999999999998855554 3 3688999999999999888
Q ss_pred CCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCccc
Q 036593 251 IPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLT 296 (574)
Q Consensus 251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 296 (574)
.+..+..+++|++|++++|.+++..|.. ..+++|+.+++++|+..
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 8888999999999999999998777765 78899999999988743
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.5e-33 Score=282.95 Aligned_cols=320 Identities=21% Similarity=0.235 Sum_probs=164.0
Q ss_pred CEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCC
Q 036593 117 QIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTN 196 (574)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 196 (574)
+.++.++..+. .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45666666555 4444332 46666677666666555556666666666666666666555666666666666666666
Q ss_pred cccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCC
Q 036593 197 NLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIP 276 (574)
Q Consensus 197 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 276 (574)
.+....+..|..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..|..+++|++|++++|.++...+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHcc-ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 66554444555566666666666655533333222 44555555555554444444444444444444444444443333
Q ss_pred CCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccC
Q 036593 277 NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSI 356 (574)
Q Consensus 277 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 356 (574)
..+.++++|+.|++++|.+...... .+..+++|++|+++++... ..+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~--------~~~~l~~L~~L~l~~~~~~-------------------------~~~ 216 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDY--------SFKRLYRLKVLEISHWPYL-------------------------DTM 216 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTT--------CSCSCTTCCEEEEECCTTC-------------------------CEE
T ss_pred hHhcccCCCcEEeCCCCcCcEeChh--------hcccCcccceeeCCCCccc-------------------------ccc
Confidence 3344444444444444444332211 1333344444444333221 112
Q ss_pred CccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEE
Q 036593 357 PKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELR 436 (574)
Q Consensus 357 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~ 436 (574)
+.......+|++|++++|.++......+..+++|++|++++|++++ ..+..+..+++|++|+
T Consensus 217 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------~~~~~~~~l~~L~~L~ 278 (477)
T 2id5_A 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST------------------IEGSMLHELLRLQEIQ 278 (477)
T ss_dssp CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE------------------ECTTSCTTCTTCCEEE
T ss_pred CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc------------------cChhhccccccCCEEE
Confidence 2222222355555555555554333344455555555555554442 2223445555555555
Q ss_pred CCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCccc
Q 036593 437 LGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS 491 (574)
Q Consensus 437 l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~ 491 (574)
+++|++.+..+.++..+++|++|++++|.+....+..|..+++|++|++++|++.
T Consensus 279 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 5555555555555555555555555555555544445555555555555555554
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-31 Score=267.33 Aligned_cols=350 Identities=17% Similarity=0.126 Sum_probs=216.1
Q ss_pred cccccCCCCccc-eeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcc
Q 036593 20 LYLLKTTNMRLS-WVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFS 98 (574)
Q Consensus 20 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 98 (574)
++.|..+.+|+. |.+..|.... .++........ ....-..++++++|+++++.+...-+..|..+++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~---~~i~~~~~~~~--~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYD---VHIDMQTQDVY--FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEES---CEECSSCCCCE--ESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceee---eeeeccccccc--ccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 567887777665 3333332111 11222222221 11112346899999999999876555668999999999999
Q ss_pred CCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCC
Q 036593 99 FNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQI 178 (574)
Q Consensus 99 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 178 (574)
+|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+.++++|++|++++|.+....
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99998888889999999999999999998777777889999999999999888444444688899999999999888777
Q ss_pred CccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCC
Q 036593 179 PTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNA 258 (574)
Q Consensus 179 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 258 (574)
+..+..+++|++|++++|.+... .+..+++|+.|++++|.+.+ ++ ..+.|+.|++++|.+.....
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-~~-----~~~~L~~L~l~~n~l~~~~~------ 222 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHNSINVVRG------ 222 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-EE-----CCSSCSEEECCSSCCCEEEC------
T ss_pred hhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-cC-----CCCcceEEECCCCeeeeccc------
Confidence 77788888899999988887654 24566777888877776542 11 23345555555554443211
Q ss_pred CCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhh
Q 036593 259 SKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF 338 (574)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 338 (574)
...++|+.|++++|.+... ..+..+++|++|++++|.+.+.
T Consensus 223 ---------------------~~~~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~Ls~n~l~~~-------- 263 (390)
T 3o6n_A 223 ---------------------PVNVELTILKLQHNNLTDT----------AWLLNYPGLVEVDLSYNELEKI-------- 263 (390)
T ss_dssp ---------------------CCCSSCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCEE--------
T ss_pred ---------------------cccccccEEECCCCCCccc----------HHHcCCCCccEEECCCCcCCCc--------
Confidence 1124455555555544432 1244455555555555544422
Q ss_pred ccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCee
Q 036593 339 SASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKL 418 (574)
Q Consensus 339 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l 418 (574)
.+..+..+++|++|++++|.+++. +..+..+++|++|++++|+++
T Consensus 264 -----------------~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~----------------- 308 (390)
T 3o6n_A 264 -----------------MYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL----------------- 308 (390)
T ss_dssp -----------------ESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-----------------
T ss_pred -----------------ChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-----------------
Confidence 222344455555555555555432 223345556666666666555
Q ss_pred eecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCccee
Q 036593 419 SGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLND 468 (574)
Q Consensus 419 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~ 468 (574)
.++..+..+++|++|++++|+++... +..+++|++|++++|++..
T Consensus 309 --~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 309 --HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp --CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred --ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 23333445566666666666665331 4455666666666666543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.9e-32 Score=267.76 Aligned_cols=307 Identities=22% Similarity=0.270 Sum_probs=161.8
Q ss_pred CCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEc
Q 036593 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSI 290 (574)
Q Consensus 211 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 290 (574)
+++.++++++.+. .+|..++..+++|+.|+++++.+....+..|..+++|++|++++|.+....+..+.++++|++|++
T Consensus 46 ~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 3444444444333 333333223444444444444443333334444444444444444444444444444445555555
Q ss_pred cCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEE
Q 036593 291 RTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLT 370 (574)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 370 (574)
++|.+...+... +..+++|++|++++|.+.... +..+..+++|++|+
T Consensus 125 ~~n~l~~l~~~~--------~~~l~~L~~L~L~~n~l~~~~-------------------------~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 125 ERNDLSSLPRGI--------FHNTPKLTTLSMSNNNLERIE-------------------------DDTFQATTSLQNLQ 171 (390)
T ss_dssp CSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCBCC-------------------------TTTTSSCTTCCEEE
T ss_pred CCCccCcCCHHH--------hcCCCCCcEEECCCCccCccC-------------------------hhhccCCCCCCEEE
Confidence 444444332111 334444444444444433221 12233344444444
Q ss_pred CcCCCCcccCCcCccccCCCCeEeccCCcccc-cCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCcc
Q 036593 371 LDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG-SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSS 449 (574)
Q Consensus 371 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 449 (574)
+++|.+++. .+..+++|++|++++|.+++ ..|..++++++++|.++.. +. ..+++|+.|++++|.+++. ..
T Consensus 172 l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~ 243 (390)
T 3o6n_A 172 LSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AW 243 (390)
T ss_dssp CCSSCCSBC---CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GG
T ss_pred CCCCcCCcc---ccccccccceeecccccccccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HH
Confidence 444444322 13334444444444444433 2334444555555544432 21 1235777777777777532 45
Q ss_pred ccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCC
Q 036593 450 LWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLE 529 (574)
Q Consensus 450 ~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 529 (574)
+..+++|++|++++|.+.+..+..+..+++|++|++++|++.. .+..+..+++|++|++++|++. .+|..+..+++|+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence 6667777777777777776666677777777777777777764 3344556777777777777776 4555566677777
Q ss_pred eeeCCCCcccccCCcCcccCCCCCeEeccCCcccc
Q 036593 530 SLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 530 ~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~ 564 (574)
.|++++|++... + +..+++|+.|++++|++..
T Consensus 322 ~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 322 NLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 777777777643 2 5566777777777777654
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.9e-31 Score=260.29 Aligned_cols=307 Identities=27% Similarity=0.444 Sum_probs=192.9
Q ss_pred ccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCc
Q 036593 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNI 237 (574)
Q Consensus 158 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 237 (574)
+..+++|++|+++++.+... ..+..+++|++|++++|.+....+ +..+++|++|++++|.+. .++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~---------- 104 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS---------- 104 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG----------
T ss_pred chhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch----------
Confidence 34556677777776666533 235666666666666666553322 555566666666665544 221
Q ss_pred CeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCC
Q 036593 238 EYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKL 317 (574)
Q Consensus 238 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L 317 (574)
.+..+++|++|++++|.+....+ +..+++|+.|++++|..... ...+..+++|
T Consensus 105 ----------------~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~---------~~~~~~l~~L 157 (347)
T 4fmz_A 105 ----------------ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD---------LSPLSNMTGL 157 (347)
T ss_dssp ----------------GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC---------CGGGTTCTTC
T ss_pred ----------------HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc---------ccchhhCCCC
Confidence 24444555555555555543222 55556666666665533221 1124555666
Q ss_pred cEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccC
Q 036593 318 SYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLED 397 (574)
Q Consensus 318 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 397 (574)
++|+++++.+.... .+..+++|++|++++|.+.+... +..+++|+++++++
T Consensus 158 ~~L~l~~~~~~~~~---------------------------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 158 NYLTVTESKVKDVT---------------------------PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208 (347)
T ss_dssp CEEECCSSCCCCCG---------------------------GGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred cEEEecCCCcCCch---------------------------hhccCCCCCEEEccCCccccccc--ccCCCccceeeccc
Confidence 66666665544221 14456667777777766654322 56667777777777
Q ss_pred CcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCC
Q 036593 398 NNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKL 477 (574)
Q Consensus 398 ~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l 477 (574)
|++++ .+. +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+
T Consensus 209 n~l~~-------------------~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 209 NQITD-------------------ITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp SCCCC-------------------CGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred CCCCC-------------------Cch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 66652 111 5567777788888777764333 66777888888888877653 456778
Q ss_pred CCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEec
Q 036593 478 KVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNV 557 (574)
Q Consensus 478 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l 557 (574)
++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++...| +..+++|++|++
T Consensus 265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 8888888888888753 457778888888888888887777778888888888888888886544 778888888888
Q ss_pred cCCccc
Q 036593 558 SQNMLE 563 (574)
Q Consensus 558 ~~n~~~ 563 (574)
++|+|+
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 888875
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-31 Score=277.20 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=118.0
Q ss_pred CCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCcee
Q 036593 64 NLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEML 143 (574)
Q Consensus 64 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 143 (574)
.+++++.++++++.+....+..|..+++|++|++++|.+.+..+..|+.+++|++|++++|.+.+..+..|.++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788999999988876666678889999999999999888888888899999999999998887667777888888888
Q ss_pred ecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcc
Q 036593 144 QASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222 (574)
Q Consensus 144 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 222 (574)
++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 8888888744444467788888888888877766666777777777777777766543 133445555555555443
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=8.2e-31 Score=257.04 Aligned_cols=307 Identities=27% Similarity=0.417 Sum_probs=212.2
Q ss_pred CCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCc
Q 036593 134 LFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIR 213 (574)
Q Consensus 134 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 213 (574)
+..+++|++|+++++.+. .++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 457899999999999987 444 48899999999999999886433 99999999999999998754 4688999999
Q ss_pred EEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCC
Q 036593 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTN 293 (574)
Q Consensus 214 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 293 (574)
+|++++|.+. .++. ...+++|+.|++++|..... .. .+..+++|++|++++|
T Consensus 114 ~L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~-~~------------------------~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 114 ELYLNEDNIS-DISP--LANLTKMYSLNLGANHNLSD-LS------------------------PLSNMTGLNYLTVTES 165 (347)
T ss_dssp EEECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCC-CG------------------------GGTTCTTCCEEECCSS
T ss_pred EEECcCCccc-Cchh--hccCCceeEEECCCCCCccc-cc------------------------chhhCCCCcEEEecCC
Confidence 9999999877 3333 22566666666665543321 11 2444555555555555
Q ss_pred cccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcC
Q 036593 294 NLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDF 373 (574)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 373 (574)
.+..... +..+++|++|++++|.+.+.. . +..+++|+.+++++
T Consensus 166 ~~~~~~~----------~~~l~~L~~L~l~~n~l~~~~--------------------------~-~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 166 KVKDVTP----------IANLTDLYSLSLNYNQIEDIS--------------------------P-LASLTSLHYFTAYV 208 (347)
T ss_dssp CCCCCGG----------GGGCTTCSEEECTTSCCCCCG--------------------------G-GGGCTTCCEEECCS
T ss_pred CcCCchh----------hccCCCCCEEEccCCcccccc--------------------------c-ccCCCccceeeccc
Confidence 4433211 344555555555555444221 1 34556666666666
Q ss_pred CCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCC
Q 036593 374 NDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSL 453 (574)
Q Consensus 374 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 453 (574)
|.+.+..+ +..+++|++|++++|++++ .+. +..+++|++|++++|.+++. ..+..+
T Consensus 209 n~l~~~~~--~~~~~~L~~L~l~~n~l~~-------------------~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 209 NQITDITP--VANMTRLNSLKIGNNKITD-------------------LSP-LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCC-------------------CGG-GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred CCCCCCch--hhcCCcCCEEEccCCccCC-------------------Ccc-hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 66654332 5666777777777776652 222 56677788888888877642 456777
Q ss_pred CCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeC
Q 036593 454 EYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDL 533 (574)
Q Consensus 454 ~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 533 (574)
++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+..++++++|++|++++|++++..+ +..+++|+.|++
T Consensus 265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 8888888888877654 346778888888888888887777778888888888888888885544 778888888888
Q ss_pred CCCccc
Q 036593 534 SGNNFS 539 (574)
Q Consensus 534 ~~n~~~ 539 (574)
++|+++
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 888875
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=1.1e-30 Score=274.17 Aligned_cols=309 Identities=22% Similarity=0.253 Sum_probs=161.1
Q ss_pred CCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEe
Q 036593 186 QNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLD 265 (574)
Q Consensus 186 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 265 (574)
.+++.++++++.+....+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+....+..|..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 4455555555555444444444555555555555554422222222 444444444444444444344444444444444
Q ss_pred CCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceE
Q 036593 266 LGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSF 345 (574)
Q Consensus 266 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 345 (574)
+++|.+....+..|.++++|+.|++++|.+...... .+..+++|++|++++|.++..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~--------------- 186 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--------TFQATTSLQNLQLSSNRLTHV--------------- 186 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT--------TTTTCTTCCEEECTTSCCSBC---------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh--------hhhcCCcCcEEECcCCCCCCc---------------
Confidence 444444433333334444444444444444332211 133344444444444433311
Q ss_pred EeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCcc
Q 036593 346 YAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPC 425 (574)
Q Consensus 346 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~ 425 (574)
.+..+++|+.+++++|.+.+ +...++|++|++++|.+ +...+.
T Consensus 187 -------------~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l------------------~~~~~~- 229 (597)
T 3oja_B 187 -------------DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSI------------------NVVRGP- 229 (597)
T ss_dssp -------------CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCC------------------CEEECS-
T ss_pred -------------ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcc------------------cccccc-
Confidence 12334455555555554442 12234455555555544 322211
Q ss_pred CcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCC
Q 036593 426 LASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLE 505 (574)
Q Consensus 426 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 505 (574)
..++|+.|++++|.+++ +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ++..+..+++|+
T Consensus 230 --~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~ 304 (597)
T 3oja_B 230 --VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLK 304 (597)
T ss_dssp --CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCC
T ss_pred --cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCc
Confidence 12467777777776653 3556666777777777777766666666677777777777777664 344445567777
Q ss_pred EeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcccc
Q 036593 506 TLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 506 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~ 564 (574)
.|+|++|.+. .+|..+..+++|+.|++++|.+... .+..+++|+.|++++|++.+
T Consensus 305 ~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 305 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp EEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCCC
Confidence 7777777766 4555566667777777777776633 24556677777777777654
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.3e-29 Score=243.60 Aligned_cols=288 Identities=22% Similarity=0.273 Sum_probs=215.8
Q ss_pred CCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEc
Q 036593 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSI 290 (574)
Q Consensus 211 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 290 (574)
+++.++++++.+. .+|..+ .++++.|++++|.+....+..+..+++|++|++++|.++...+..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5778888877766 666544 256777777777776666666777777777777777776666666777777777777
Q ss_pred cCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEE
Q 036593 291 RTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLT 370 (574)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 370 (574)
++|.+...+... .++|++|++++|.+. ...+..+..+++|++|+
T Consensus 110 ~~n~l~~l~~~~-----------~~~L~~L~l~~n~i~-------------------------~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 110 SKNHLVEIPPNL-----------PSSLVELRIHDNRIR-------------------------KVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp CSSCCCSCCSSC-----------CTTCCEEECCSSCCC-------------------------CCCSGGGSSCSSCCEEE
T ss_pred CCCcCCccCccc-----------cccCCEEECCCCccC-------------------------ccCHhHhCCCccCCEEE
Confidence 777666433211 145566666555544 33344567888999999
Q ss_pred CcCCCCcc--cCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCc
Q 036593 371 LDFNDLNG--TIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPS 448 (574)
Q Consensus 371 l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 448 (574)
+++|.++. ..+..+..+ +|++|++++|++++ +|..+. ++|++|++++|.+.+..+.
T Consensus 154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-------------------l~~~~~--~~L~~L~l~~n~i~~~~~~ 211 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-------------------IPKDLP--ETLNELHLDHNKIQAIELE 211 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-------------------CCSSSC--SSCSCCBCCSSCCCCCCTT
T ss_pred CCCCccccCCCCcccccCC-ccCEEECcCCCCCc-------------------cCcccc--CCCCEEECCCCcCCccCHH
Confidence 99988863 556667666 88888888888773 333332 6899999999999877778
Q ss_pred cccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccC----
Q 036593 449 SLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGS---- 524 (574)
Q Consensus 449 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~---- 524 (574)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++..+..+++|++|++++|++++..+..|..
T Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290 (332)
T ss_dssp SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccc
Confidence 8999999999999999998877778889999999999999998 56677889999999999999999776666654
Q ss_pred --CcCCCeeeCCCCccc--ccCCcCcccCCCCCeEeccCCc
Q 036593 525 --LISLESLDLSGNNFS--GKIPKSLEALSHLKQFNVSQNM 561 (574)
Q Consensus 525 --~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~l~l~~n~ 561 (574)
.++|+.|++++|++. ...+..|..+++|+.+++++|+
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 367999999999987 5677789999999999999885
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3e-34 Score=293.18 Aligned_cols=388 Identities=19% Similarity=0.156 Sum_probs=205.7
Q ss_pred CCCceeecccccCcccCchh-ccCCCCCCEEEccCCcCCcC----CCccccCCCCCCEEEccCCcccccCchhhc-ccC-
Q 036593 138 SKLEMLQASFNVIDGNIPSG-IGNLSNLFDLDLRHNNLQDQ----IPTEIGNLQNLESLALGTNNLSGLIPPAIF-NIS- 210 (574)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~~~- 210 (574)
++|++|+++.+.+....... +..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46777888777765332222 56677788888877776632 244556667777777777776554333332 233
Q ss_pred ---CCcEEEcccCccccc----CCchhhcCCCCcCeeecccccceecCCcCc-----cCCCCccEEeCCCCceeecC---
Q 036593 211 ---TIRVLNLHSNQFSGR----LPSTIGHSLPNIEYLTLAINNLIGTIPDSL-----TNASKLIGLDLGSNSFSGHI--- 275 (574)
Q Consensus 211 ---~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~--- 275 (574)
+|++|++++|.+.+. ++..+. .+++|++|++++|.+.......+ ...++|++|++++|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTT-SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHc-cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 567777776665521 122222 45555555555555432211111 11234555555555444321
Q ss_pred -CCCccCCCcCceEEccCCcccccCCCCcccccccccc-CCCCCcEEEccCCCCCCCCChhhhhhccccceEEecccccc
Q 036593 276 -PNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLT-NCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLG 353 (574)
Q Consensus 276 -~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 353 (574)
+..+..+++|++|++++|.+...+... +...+. ..++|++|++++|.++.....
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~----l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------- 217 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRV----LCQGLKDSPCQLEALKLESCGVTSDNCR-------------------- 217 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHH----HHHHHHHSCCCCCEEECTTSCCBTTHHH--------------------
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHH----HHHHHhcCCCCceEEEccCCCCcHHHHH--------------------
Confidence 222333444444554444433221100 000010 123444444444443322110
Q ss_pred ccCCccccCCCCCcEEECcCCCCcccCC-----cCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcC
Q 036593 354 GSIPKEIGNLRGLILLTLDFNDLNGTIP-----TSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLAS 428 (574)
Q Consensus 354 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~ 428 (574)
.++..+..+++|++|++++|.+++... ..+..+++|++|++++|++++.... .++..+..
T Consensus 218 -~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------~l~~~l~~ 282 (461)
T 1z7x_W 218 -DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--------------DLCRVLRA 282 (461)
T ss_dssp -HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--------------HHHHHHHH
T ss_pred -HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--------------HHHHHHhh
Confidence 123334455666666666666554321 1112356666666666665531000 13344556
Q ss_pred CCCCCeEECCCCeecccCCcccc-----CCCCCCeEeCCCCcceec----CCccccCCCCCCEEeCCCCcccccCccccc
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLW-----SLEYILEINLSSNSLNDS----LPSNVQKLKVLRVLDLSRNQLSGNIPSTIG 499 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 499 (574)
+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 77777777777776543322222 235777778877777654 344455667788888888777654433333
Q ss_pred C-----CCCCCEeeCCCCcccc----cCCccccCCcCCCeeeCCCCcccccCCcCcc-----cCCCCCeEeccCCccccc
Q 036593 500 A-----LVDLETLSLASNQFQG----PIPESVGSLISLESLDLSGNNFSGKIPKSLE-----ALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 500 ~-----~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~l~l~~n~~~~~ 565 (574)
. .++|++|++++|.+++ .++..+..+++|+.|++++|+++......+. ...+|+.|++.++.+...
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 2 5678888888887775 5566667777888888888877653222221 133577777776665543
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8.1e-29 Score=240.74 Aligned_cols=290 Identities=21% Similarity=0.270 Sum_probs=221.5
Q ss_pred CCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEE
Q 036593 210 STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLS 289 (574)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 289 (574)
.+++.++++++.+. .+|..+ .+.++.|++++|.+....+..+..+++|++|++++|.+....+..+.++++|++|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 36788888887776 566543 25777888888877766666777777888888888777766677777777778887
Q ss_pred ccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEE
Q 036593 290 IRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILL 369 (574)
Q Consensus 290 l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L 369 (574)
+++|.+...+... .++|++|++++|.++. ..+..+..+++|++|
T Consensus 107 Ls~n~l~~l~~~~-----------~~~L~~L~l~~n~l~~-------------------------~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 107 LSKNQLKELPEKM-----------PKTLQELRVHENEITK-------------------------VRKSVFNGLNQMIVV 150 (330)
T ss_dssp CCSSCCSBCCSSC-----------CTTCCEEECCSSCCCB-------------------------BCHHHHTTCTTCCEE
T ss_pred CCCCcCCccChhh-----------cccccEEECCCCcccc-------------------------cCHhHhcCCccccEE
Confidence 7777766543211 1466666666665543 334456778899999
Q ss_pred ECcCCCCcc--cCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCC
Q 036593 370 TLDFNDLNG--TIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIP 447 (574)
Q Consensus 370 ~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 447 (574)
++++|.+.. ..+..+..+++|++|++++|+++. +|..+. ++|++|++++|++.+..+
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------l~~~~~--~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-------------------IPQGLP--PSLTELHLDGNKITKVDA 209 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-------------------CCSSCC--TTCSEEECTTSCCCEECT
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-------------------CCcccc--ccCCEEECCCCcCCccCH
Confidence 999998864 566778889999999999998872 333332 789999999999987778
Q ss_pred ccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccC---
Q 036593 448 SSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGS--- 524 (574)
Q Consensus 448 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~--- 524 (574)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++..+..+++|++|++++|++++..+..|..
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 88999999999999999998887778889999999999999998 56677888999999999999999766666643
Q ss_pred ---CcCCCeeeCCCCcccc--cCCcCcccCCCCCeEeccCCc
Q 036593 525 ---LISLESLDLSGNNFSG--KIPKSLEALSHLKQFNVSQNM 561 (574)
Q Consensus 525 ---~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~l~l~~n~ 561 (574)
.++|+.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3789999999999864 556788999999999999985
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1e-33 Score=289.29 Aligned_cols=392 Identities=20% Similarity=0.179 Sum_probs=216.7
Q ss_pred CCCCEEEccCCcCccCCCcc-ccCCCCCCEEEccCCccccc----CCcCCCCCCCCceeecccccCcccCchhc-cCCC-
Q 036593 90 GRLKFISFSFNKLSGSIPTW-IGVLSKLQIMSLRNNNITGP----IPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLS- 162 (574)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~- 162 (574)
++|++|+++++++.+..... +..+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677788777766443332 66677777777777776532 23445566777777777766653323222 2233
Q ss_pred ---CCCEEEccCCcCCcC----CCccccCCCCCCEEEccCCcccccCchhhcc-----cCCCcEEEcccCcccccCCchh
Q 036593 163 ---NLFDLDLRHNNLQDQ----IPTEIGNLQNLESLALGTNNLSGLIPPAIFN-----ISTIRVLNLHSNQFSGRLPSTI 230 (574)
Q Consensus 163 ---~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~ 230 (574)
+|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+.+.....+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 566666666666532 2455566666666666666654433322221 2345555555555443221111
Q ss_pred hcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCcc-----CCCcCceEEccCCcccccCCCCccc
Q 036593 231 GHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFG-----NLRHLNVLSIRTNNLTTESSSADQW 305 (574)
Q Consensus 231 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~ 305 (574)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+...+..
T Consensus 163 ---------------------~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~---- 217 (461)
T 1z7x_W 163 ---------------------ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR---- 217 (461)
T ss_dssp ---------------------HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH----
T ss_pred ---------------------HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH----
Confidence 22233445566666666655433222222 244677777777766543211
Q ss_pred cccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCccc----CC
Q 036593 306 SFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGT----IP 381 (574)
Q Consensus 306 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~ 381 (574)
.+...+..+++|++|++++|.+++.....+.. ..+..+++|++|++++|.+++. ++
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~--------------------~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLGDVGMAELCP--------------------GLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH--------------------HHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred HHHHHHHhCCCccEEeccCCcCChHHHHHHHH--------------------HHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 12334556677777777776654321111111 1122456677777777766643 33
Q ss_pred cCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCcc-CcCCCCCCeEECCCCeeccc----CCccccCCCCC
Q 036593 382 TSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPC-LASLTSLRELRLGSNKLTSS----IPSSLWSLEYI 456 (574)
Q Consensus 382 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~-~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L 456 (574)
..+..+++|++|++++|.+++..+. .+... ....++|++|++++|.+++. .+..+..+++|
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~~~~~~--------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELGDEGAR--------------LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCHHHHHH--------------HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred HHHhhCCCcceEECCCCCCchHHHH--------------HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence 4455577777777777776532111 01111 12235777777777776644 23445566777
Q ss_pred CeEeCCCCcceecCCccccC-----CCCCCEEeCCCCcccc----cCcccccCCCCCCEeeCCCCcccccCCcc----cc
Q 036593 457 LEINLSSNSLNDSLPSNVQK-----LKVLRVLDLSRNQLSG----NIPSTIGALVDLETLSLASNQFQGPIPES----VG 523 (574)
Q Consensus 457 ~~L~L~~~~l~~~~~~~~~~-----l~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----l~ 523 (574)
++|++++|.+.+..+..+.. .++|++|++++|.+++ ..+..+..+++|++|++++|++++..... +.
T Consensus 344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 423 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHT
T ss_pred cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhc
Confidence 77777777776543332221 5678888888887774 44556667788888888888777532222 11
Q ss_pred -CCcCCCeeeCCCCcccc
Q 036593 524 -SLISLESLDLSGNNFSG 540 (574)
Q Consensus 524 -~~~~L~~L~l~~n~~~~ 540 (574)
...+|+.|++.++.+..
T Consensus 424 ~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 424 QPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp STTCCCCEEECTTCCCCH
T ss_pred cCCcchhheeecccccCH
Confidence 22357777777666654
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.7e-28 Score=235.40 Aligned_cols=296 Identities=20% Similarity=0.249 Sum_probs=211.8
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEcc
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (574)
+++.++++++++. .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4567888888887 4565443 689999999999887777789999999999999999988888899999999999999
Q ss_pred CCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCc--CCCccccCCCCCCEEEccCCcccc
Q 036593 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQD--QIPTEIGNLQNLESLALGTNNLSG 200 (574)
Q Consensus 123 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~ 200 (574)
+|.+. ..|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99887 4555443 789999999988886666778888999999998887753 456677888888888888888764
Q ss_pred cCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCcc
Q 036593 201 LIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFG 280 (574)
Q Consensus 201 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 280 (574)
. +..+. ++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+. ..|..+.
T Consensus 186 l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 186 I-PQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp C-CSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred C-Ccccc--ccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 3 33332 6788888888877744444444 6777777777777777666666777777777777777776 4566677
Q ss_pred CCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccc
Q 036593 281 NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEI 360 (574)
Q Consensus 281 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 360 (574)
.+++|++|++++|.++..+...... .......+.++.+++++|++... ...|..+
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~--~~~~~~~~~l~~l~l~~N~~~~~-----------------------~i~~~~f 315 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCP--PGYNTKKASYSGVSLFSNPVQYW-----------------------EIQPSTF 315 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSC--SSCCTTSCCCSEEECCSSSSCGG-----------------------GSCGGGG
T ss_pred cCCCcCEEECCCCcCCccChhhcCC--cccccccccccceEeecCccccc-----------------------ccCcccc
Confidence 7777777777777776654333110 00011235566666666655421 1344556
Q ss_pred cCCCCCcEEECcCC
Q 036593 361 GNLRGLILLTLDFN 374 (574)
Q Consensus 361 ~~l~~L~~L~l~~~ 374 (574)
..+++++.+++++|
T Consensus 316 ~~~~~l~~l~L~~N 329 (330)
T 1xku_A 316 RCVYVRAAVQLGNY 329 (330)
T ss_dssp TTCCCGGGEEC---
T ss_pred ccccceeEEEeccc
Confidence 77777888887766
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.6e-28 Score=238.72 Aligned_cols=293 Identities=20% Similarity=0.217 Sum_probs=163.1
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEcc
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (574)
++++++++++++. .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|++.+..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3456677766665 3454442 567777777777665555667777777777777777766666667777777777777
Q ss_pred CCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCc--CCCccccCCCCCCEEEccCCcccc
Q 036593 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQD--QIPTEIGNLQNLESLALGTNNLSG 200 (574)
Q Consensus 123 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~ 200 (574)
+|.+. .+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+.. ..+..+..+ +|+.|++++|.+..
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 77665 3343333 566666666666554444445556666666666655532 333344444 45555555554432
Q ss_pred cCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCcc
Q 036593 201 LIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFG 280 (574)
Q Consensus 201 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 280 (574)
+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+....+..+.
T Consensus 187 -------------------------l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 187 -------------------------IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp -------------------------CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred -------------------------cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 333221 4555555555555544445555666666666666666555555566
Q ss_pred CCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccc
Q 036593 281 NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEI 360 (574)
Q Consensus 281 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 360 (574)
.+++|+.|++++|.+... +..+..+++|++|++++|.++...+..+.... ..
T Consensus 239 ~l~~L~~L~L~~N~l~~l---------p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-------------------~~ 290 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSRV---------PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG-------------------FG 290 (332)
T ss_dssp GCTTCCEEECCSSCCCBC---------CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS-------------------CC
T ss_pred CCCCCCEEECCCCcCeec---------ChhhhcCccCCEEECCCCCCCccChhHccccc-------------------cc
Confidence 666666666666665532 22255566666666666666654433322210 00
Q ss_pred cCCCCCcEEECcCCCCc--ccCCcCccccCCCCeEeccCC
Q 036593 361 GNLRGLILLTLDFNDLN--GTIPTSVGTLQQLQGLSLEDN 398 (574)
Q Consensus 361 ~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~ 398 (574)
...+.|+.+++++|.+. +..+.+|..+++|+.+++++|
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 11345566666666554 344455666666666666655
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2e-28 Score=235.30 Aligned_cols=254 Identities=28% Similarity=0.487 Sum_probs=210.7
Q ss_pred CcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccC-CCCCCCCChhhhhhccccceEEeccccccccCCcccc
Q 036593 283 RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDS-NPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIG 361 (574)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 361 (574)
.+++.|++++|.+.... ..+..+..+++|++|++++ +.+.+..+..+..+. +|++|++++|.+....|..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~------~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY------PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCE------ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccCCc------ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHh
Confidence 57888888888876410 1334577888888888884 777777777776654 788888888888777777778
Q ss_pred CCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCC-CCCeEECCCC
Q 036593 362 NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLT-SLRELRLGSN 440 (574)
Q Consensus 362 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~-~L~~L~l~~n 440 (574)
.+++|++|++++|.+.+..+..+..+++|++|++++|++++ .+|..+..++ +|++|++++|
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~------------------~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG------------------AIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE------------------ECCGGGGCCCTTCCEEECCSS
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC------------------cCCHHHhhhhhcCcEEECcCC
Confidence 88888888888888777777777788888888877777764 4556677777 9999999999
Q ss_pred eecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCc
Q 036593 441 KLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPE 520 (574)
Q Consensus 441 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 520 (574)
++.+..+..+..+. |++|++++|.+.+..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|++++..|.
T Consensus 185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh
Confidence 99988898888887 99999999999988888899999999999999999865554 78889999999999999988999
Q ss_pred cccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCc-ccc
Q 036593 521 SVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNM-LEG 564 (574)
Q Consensus 521 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~-~~~ 564 (574)
.+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+ +.|
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 9999999999999999999888876 888999999999999 555
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=7.2e-31 Score=276.95 Aligned_cols=455 Identities=15% Similarity=0.098 Sum_probs=251.4
Q ss_pred CCccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCccc---ccCch------------hhcCCCC
Q 036593 27 NMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFY---GHLPN------------ELGKLGR 91 (574)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~---~~~~~------------~~~~~~~ 91 (574)
..+.+|.++.+..+ +.+.+..+ ....++..+..+++|++|++++|... +.+|. ....+++
T Consensus 39 ~vck~W~~~~~~~~----~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 113 (592)
T 3ogk_B 39 LVCRRWFKIDSETR----EHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113 (592)
T ss_dssp TSCHHHHHHHHHHC----CEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred HHhHHHHHhhhccc----cEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC
Confidence 45567876643221 23333332 12233445567788888888876432 11111 1124556
Q ss_pred CCEEEccCCcCccCCCccccC-CCC-CCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEc
Q 036593 92 LKFISFSFNKLSGSIPTWIGV-LSK-LQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDL 169 (574)
Q Consensus 92 L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 169 (574)
|++|++++|.+.+..+..+.. +++ |++|++++|... ... .++....++++|++|++
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~--------------------~l~~~~~~~~~L~~L~L 171 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTD--------------------GLLSIVTHCRKIKTLLM 171 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHH--------------------HHHHHHHHCTTCSEEEC
T ss_pred CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHH--------------------HHHHHHhhCCCCCEEEC
Confidence 666666665554444444433 222 555555554311 000 11111223444444444
Q ss_pred cCCcCCcCCC----ccccCCCCCCEEEccCCccc----ccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeee
Q 036593 170 RHNNLQDQIP----TEIGNLQNLESLALGTNNLS----GLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241 (574)
Q Consensus 170 ~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 241 (574)
++|.+.+... ..+..+++|++|+++.|.+. ...+..+..+++|+.|++++|.+. .++..+. .+++|+.++
T Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~-~~~~L~~L~ 249 (592)
T 3ogk_B 172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFK-AAANLEEFC 249 (592)
T ss_dssp TTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHH-HCTTCCEEE
T ss_pred ccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHh-hhhHHHhhc
Confidence 4444332211 12233445555555544443 122222334555555555555544 2332222 455555555
Q ss_pred cccccce---ecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCc
Q 036593 242 LAINNLI---GTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLS 318 (574)
Q Consensus 242 l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 318 (574)
++..... ......+..+++|+.+.+.++... ..+..+..+++|++|++++|.+.... +...+..+++|+
T Consensus 250 l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~-------~~~~~~~~~~L~ 321 (592)
T 3ogk_B 250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETED-------HCTLIQKCPNLE 321 (592)
T ss_dssp ECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHH-------HHHHHTTCTTCC
T ss_pred ccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHH-------HHHHHHhCcCCC
Confidence 5432111 012233455666777776664322 34455566777777777777644321 122245667777
Q ss_pred EEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcC-----------CCCcccCCcC-ccc
Q 036593 319 YLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDF-----------NDLNGTIPTS-VGT 386 (574)
Q Consensus 319 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~-----------~~~~~~~~~~-~~~ 386 (574)
+|++++ .+. ...++.....+++|++|++++ +.+++..... ...
T Consensus 322 ~L~L~~-~~~------------------------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 322 VLETRN-VIG------------------------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEEEG-GGH------------------------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEeccC-ccC------------------------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 776652 111 112222345678899999984 4454332222 355
Q ss_pred cCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCc-CCCCCCeEECC----CCeeccc-----CCccccCCCCC
Q 036593 387 LQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLA-SLTSLRELRLG----SNKLTSS-----IPSSLWSLEYI 456 (574)
Q Consensus 387 ~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~-~~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L 456 (574)
+++|++|+++.+++++. ....+. .+++|++|+++ .+.+++. .+..+..+++|
T Consensus 377 ~~~L~~L~l~~~~l~~~------------------~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNE------------------SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp CTTCSEEEEEESCCCHH------------------HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred CccCeEEEeecCCccHH------------------HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 88999998877777643 222333 48899999996 5566532 22236678999
Q ss_pred CeEeCCCCc--ceecCCccc-cCCCCCCEEeCCCCccccc-CcccccCCCCCCEeeCCCCccccc-CCccccCCcCCCee
Q 036593 457 LEINLSSNS--LNDSLPSNV-QKLKVLRVLDLSRNQLSGN-IPSTIGALVDLETLSLASNQFQGP-IPESVGSLISLESL 531 (574)
Q Consensus 457 ~~L~L~~~~--l~~~~~~~~-~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L 531 (574)
++|++++|. +.+.....+ ..+++|++|++++|++++. .+..+.++++|++|+|++|.+++. .+.....+++|+.|
T Consensus 439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence 999997654 444433333 4589999999999998753 334557899999999999998754 33445678999999
Q ss_pred eCCCCcccccCCcCcc-cCCCCCeEeccCCc
Q 036593 532 DLSGNNFSGKIPKSLE-ALSHLKQFNVSQNM 561 (574)
Q Consensus 532 ~l~~n~~~~~~~~~l~-~l~~L~~l~l~~n~ 561 (574)
++++|+++......+. .+|.+....+..++
T Consensus 519 ~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~ 549 (592)
T 3ogk_B 519 WVQGYRASMTGQDLMQMARPYWNIELIPSRR 549 (592)
T ss_dssp EEESCBCCTTCTTGGGGCCTTEEEEEECCC-
T ss_pred ECcCCcCCHHHHHHHHHhCCCcEEEEecCcc
Confidence 9999998865554443 66777777666653
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.4e-27 Score=229.11 Aligned_cols=245 Identities=22% Similarity=0.293 Sum_probs=168.8
Q ss_pred cccc----cCCCCccceeeeeecC--------CCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhc
Q 036593 20 LYLL----KTTNMRLSWVGISCDS--------RHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELG 87 (574)
Q Consensus 20 ~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 87 (574)
.+.| .....+|.|.|+.|.. ...++++|+++++.+. .+|..+.++++|++|+|++|.+. .+|..+.
T Consensus 47 ~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~ 124 (328)
T 4fcg_A 47 HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124 (328)
T ss_dssp HHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG
T ss_pred hhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh
Confidence 3557 3467889999998852 3578999999999998 67777888999999999999987 7888899
Q ss_pred CCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCC---------CCCCceeecccccCcccCchhc
Q 036593 88 KLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN---------LSKLEMLQASFNVIDGNIPSGI 158 (574)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~l 158 (574)
.+++|++|++++|.+. .+|..+.++++|++|++++|...+..|..+.. +++|++|++++|.+. .+|..+
T Consensus 125 ~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l 202 (328)
T 4fcg_A 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI 202 (328)
T ss_dssp GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG
T ss_pred ccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh
Confidence 9999999999999988 77888999999999999998777677766543 666666666666665 555556
Q ss_pred cCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcC
Q 036593 159 GNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIE 238 (574)
Q Consensus 159 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 238 (574)
.++++|++|++++|.+.. .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|
T Consensus 203 ~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----------- 270 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP----------- 270 (328)
T ss_dssp GGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-----------
T ss_pred cCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-----------
Confidence 666666666666665553 33345555566666665555555555555555555555555555444444
Q ss_pred eeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCc
Q 036593 239 YLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNN 294 (574)
Q Consensus 239 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (574)
..+..+++|++|++++|.+.+..|..+.++++++.+.+..+.
T Consensus 271 --------------~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 271 --------------LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp --------------TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred --------------hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 444455555555555555555555556666666666555443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=235.17 Aligned_cols=287 Identities=18% Similarity=0.170 Sum_probs=209.5
Q ss_pred cccCCCCccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCc
Q 036593 22 LLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK 101 (574)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 101 (574)
.|..+...|.|.++ .++++++++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|+
T Consensus 22 ~~~~~~~~C~~~~~-----------c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 22 SSNQASLSCDRNGI-----------CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -----CCEECTTSE-----------EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCccCCCCCCCeE-----------eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 34445555666543 456677776 4555444 488888888888876666678888888888888888
Q ss_pred CccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCc-hhccCCCCCCEEEccCC-cCCcCCC
Q 036593 102 LSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIP-SGIGNLSNLFDLDLRHN-NLQDQIP 179 (574)
Q Consensus 102 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~-~~~~~~~ 179 (574)
+.+..+..|.++++|++|++++|.+....+..+.++++|++|++++|.+....+ ..+.++++|++|++++| .+....+
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 887777888888888888888888875444447788888888888888874333 36788888888888887 4666666
Q ss_pred ccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCcc---
Q 036593 180 TEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLT--- 256 (574)
Q Consensus 180 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--- 256 (574)
..+.++++|++|++++|.+....+..+..+++|++|++++|.+. .++..+...+++|+.|++++|.+.......+.
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 77888888888888888888777888888888888888888875 56666555678888888888877654333322
Q ss_pred CCCCccEEeCCCCceee----cCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCC
Q 036593 257 NASKLIGLDLGSNSFSG----HIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGIL 331 (574)
Q Consensus 257 ~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 331 (574)
..+.++.+++.++.+.+ ..+..+..+++|+.|++++|.++..+... +..+++|++|++++|++....
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~--------~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI--------FDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCBCCCH
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHH--------HhcCCCCCEEEeeCCCccCcC
Confidence 34567777777776653 24556778889999999998887654332 577888999999988877643
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=5.2e-30 Score=270.36 Aligned_cols=425 Identities=15% Similarity=0.108 Sum_probs=227.2
Q ss_pred CCCcEEEEEcCCCCCc---cccCCCc------------cCCCCCcEEEccCCcccccCchhhcC-CCC-CCEEEccCCc-
Q 036593 40 RHQRVKALNLSGMGLG---GTIPPHL------------GNLSFLMSLDVTLNNFYGHLPNELGK-LGR-LKFISFSFNK- 101 (574)
Q Consensus 40 ~~~~~~~l~l~~~~~~---~~~~~~~------------~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~- 101 (574)
+.+++++|+++++... +.+|..+ ..+++|++|+|++|.+.+..+..+.. ++. |++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 3567999999875321 1222222 27899999999999887665666655 455 9999999986
Q ss_pred Ccc-CCCccccCCCCCCEEEccCCcccccCC----cCCCCCCCCceeecccccCc----ccCchhccCCCCCCEEEccCC
Q 036593 102 LSG-SIPTWIGVLSKLQIMSLRNNNITGPIP----NSLFNLSKLEMLQASFNVID----GNIPSGIGNLSNLFDLDLRHN 172 (574)
Q Consensus 102 ~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~ 172 (574)
+.. ..+....++++|++|++++|.+.+... ..+..+++|++|+++.+.+. ..++..+.++++|++|+++++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 221 122334578999999999998764422 22345677777777776664 223333456666777776666
Q ss_pred cCCcCCCccccCCCCCCEEEccCCccc---ccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeeccccccee
Q 036593 173 NLQDQIPTEIGNLQNLESLALGTNNLS---GLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIG 249 (574)
Q Consensus 173 ~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 249 (574)
.+.. .+..+..+++|++|+++..... ......+..+++|+.+++.++... .
T Consensus 231 ~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~------------------------ 284 (592)
T 3ogk_B 231 EILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-E------------------------ 284 (592)
T ss_dssp BGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-T------------------------
T ss_pred cHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-H------------------------
Confidence 5543 3445555666666666532211 111223334445555544443211 2
Q ss_pred cCCcCccCCCCccEEeCCCCceeecCC-CCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccC----
Q 036593 250 TIPDSLTNASKLIGLDLGSNSFSGHIP-NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDS---- 324 (574)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~---- 324 (574)
.+..+..+++|++|++++|.+..... ..+..+++|+.|+++ +.+... .+......+++|++|++++
T Consensus 285 -l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~-------~l~~~~~~~~~L~~L~L~~g~~~ 355 (592)
T 3ogk_B 285 -MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR-------GLEVLAQYCKQLKRLRIERGADE 355 (592)
T ss_dssp -GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH-------HHHHHHHHCTTCCEEEEECCCCS
T ss_pred -HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH-------HHHHHHHhCCCCCEEEeecCccc
Confidence 22233445556666666655432221 224556677777666 222221 1122234566677777762
Q ss_pred -------CCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccc-cCCCCeEecc
Q 036593 325 -------NPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGT-LQQLQGLSLE 396 (574)
Q Consensus 325 -------~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~ 396 (574)
+.+++.... .....+++|++|+++.+.+++.....+.. +++|++|+++
T Consensus 356 ~~~~~~~~~~~~~~~~------------------------~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 356 QGMEDEEGLVSQRGLI------------------------ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp STTSSTTCCCCHHHHH------------------------HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred cccccccCccCHHHHH------------------------HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 222211000 11223556666666555555443333333 6666666664
Q ss_pred ----CCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCe--ecccCCccc-cCCCCCCeEeCCCCcceec
Q 036593 397 ----DNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNK--LTSSIPSSL-WSLEYILEINLSSNSLNDS 469 (574)
Q Consensus 397 ----~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~-~~~~~L~~L~L~~~~l~~~ 469 (574)
.+.+++. |. ...++..+..+++|+.|+++.|. +++.....+ ..+++|++|++++|.+++.
T Consensus 412 ~~~~~n~l~~~-p~------------~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 412 LLDREERITDL-PL------------DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp ECSCCSCCSSC-CC------------HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred ecCCCccccCc-hH------------HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence 3333321 00 00111224456677777776543 332222222 2366777777777776543
Q ss_pred -CCccccCCCCCCEEeCCCCcccccC-cccccCCCCCCEeeCCCCcccccCCccc-cCCcCCCeeeCCCC
Q 036593 470 -LPSNVQKLKVLRVLDLSRNQLSGNI-PSTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGN 536 (574)
Q Consensus 470 -~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~n 536 (574)
.+..+..+++|++|++++|.+++.. +..+..+++|++|++++|+++......+ ..+|.+....+..+
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 2333456677777777777765332 2233457777777777777665433332 34455555444443
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=5.5e-26 Score=218.34 Aligned_cols=260 Identities=22% Similarity=0.273 Sum_probs=166.6
Q ss_pred CCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhh
Q 036593 259 SKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF 338 (574)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 338 (574)
+++++|++++|.+....+..|.++++|+.|++++|.+...+. ....+..+++|++|++++|.+.
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~~~~~~L~~L~Ls~n~i~---------- 91 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC------CSQSDFGTTSLKYLDLSFNGVI---------- 91 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE------EEHHHHSCSCCCEEECCSCSEE----------
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC------cccccccccccCEEECCCCccc----------
Confidence 456666666666664444445666666666666666543210 0112334555566665555433
Q ss_pred ccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCC-cCccccCCCCeEeccCCcccccCCCCCceEEccCCe
Q 036593 339 SASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIP-TSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNK 417 (574)
Q Consensus 339 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~ 417 (574)
.++..+..+++|++|++++|.+.+... ..+..+++|++|++++|++++
T Consensus 92 ----------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------- 140 (306)
T 2z66_A 92 ----------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--------------- 140 (306)
T ss_dssp ----------------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE---------------
T ss_pred ----------------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc---------------
Confidence 223345667777777777777765544 456677777777777776653
Q ss_pred eeecCCccCcCCCCCCeEECCCCeecc-cCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcc
Q 036593 418 LSGHIPPCLASLTSLRELRLGSNKLTS-SIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPS 496 (574)
Q Consensus 418 l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 496 (574)
..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+.
T Consensus 141 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 141 ---AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp ---CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred ---cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 344556677788888888887765 4667777778888888888887777677777778888888888887766666
Q ss_pred cccCCCCCCEeeCCCCcccccCCccccCCc-CCCeeeCCCCcccccCC-cC-cccCCCCCeEeccCCccccccCC
Q 036593 497 TIGALVDLETLSLASNQFQGPIPESVGSLI-SLESLDLSGNNFSGKIP-KS-LEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 497 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~-~~-l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
.+..+++|++|++++|.+.+..+..+..++ +|+.|++++|++..... .. ..-+...+.+.+..+++....|.
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 677778888888888887777777777774 78888888887764211 11 11223344445555555555554
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.9e-25 Score=225.23 Aligned_cols=250 Identities=21% Similarity=0.243 Sum_probs=191.1
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEcc
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (574)
....+++++.+++. +|..+. +++++|+|++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34578888888874 665554 689999999999988888889999999999999999988888889999999999999
Q ss_pred CCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccC-CcCCcCCCccccCCCCCCEEEccCCccccc
Q 036593 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRH-NNLQDQIPTEIGNLQNLESLALGTNNLSGL 201 (574)
Q Consensus 123 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 201 (574)
+|.+....+..+..+++|++|++++|.+....+..+.++++|++|++++ +.+....+..|.++++|++|++++|.+...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9998866666788899999999999988866666788899999999988 445555556678888888888888887744
Q ss_pred CchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccC
Q 036593 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281 (574)
Q Consensus 202 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 281 (574)
+ .+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+....+..|..+++|++|++++|.++...+..+..
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred -c-cccccccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 2 466777788888887777744444443 6677777777777776666666666777777777777766555555666
Q ss_pred CCcCceEEccCCccccc
Q 036593 282 LRHLNVLSIRTNNLTTE 298 (574)
Q Consensus 282 l~~L~~L~l~~~~~~~~ 298 (574)
+++|+.|++++|++...
T Consensus 289 l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CTTCCEEECCSSCEECS
T ss_pred ccCCCEEEccCCCcCCC
Confidence 66777777776666553
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.6e-25 Score=223.74 Aligned_cols=250 Identities=20% Similarity=0.227 Sum_probs=195.3
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEcc
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (574)
....+++++.+++ .+|..+. +++++|+|++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3457888888887 4666554 689999999999988778899999999999999999998888899999999999999
Q ss_pred CCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCC-cCCcCCCccccCCCCCCEEEccCCccccc
Q 036593 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHN-NLQDQIPTEIGNLQNLESLALGTNNLSGL 201 (574)
Q Consensus 123 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 201 (574)
+|.+....+..+..+++|++|++++|.+....+..+.++++|++|+++++ .+....+..|.++++|++|++++|.+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 99998666667899999999999999988666677889999999999884 45555556788888888898888888743
Q ss_pred CchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccC
Q 036593 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281 (574)
Q Consensus 202 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 281 (574)
+ .+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..|..+++|++|++++|.++...+..|..
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred -c-ccCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 3 366777788888888777744444443 6777777777777777666666777777777777777776655566666
Q ss_pred CCcCceEEccCCccccc
Q 036593 282 LRHLNVLSIRTNNLTTE 298 (574)
Q Consensus 282 l~~L~~L~l~~~~~~~~ 298 (574)
+++|+.|++++|++...
T Consensus 278 l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTCCEEECCSSCEECS
T ss_pred ccCCCEEEcCCCCccCC
Confidence 77777777777766553
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.5e-25 Score=215.38 Aligned_cols=247 Identities=20% Similarity=0.259 Sum_probs=158.4
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccC--CCccccCCCCCCEEEccC
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGS--IPTWIGVLSKLQIMSLRN 123 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~ 123 (574)
.+++++++++ .+|..+. ++|++|++++|.+.+..+..|+++++|++|++++|.+... .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4555666666 3454443 5788888888887644444578888888888888877633 255666778888888888
Q ss_pred CcccccCCcCCCCCCCCceeecccccCcccCc-hhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccc-c
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNVIDGNIP-SGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSG-L 201 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~ 201 (574)
|.+. ..+..+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+....+..+..+++|++|++++|.+.. .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 8776 455557777777777777777764333 456777777777777777766666667777777777777777654 4
Q ss_pred CchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccC
Q 036593 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281 (574)
Q Consensus 202 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 281 (574)
.+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 555566666677777766666533343333 4555666666655555444444555555666666666555555555555
Q ss_pred CC-cCceEEccCCcccc
Q 036593 282 LR-HLNVLSIRTNNLTT 297 (574)
Q Consensus 282 l~-~L~~L~l~~~~~~~ 297 (574)
++ +|+.|++++|++..
T Consensus 246 ~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCTTCCEEECTTCCEEC
T ss_pred hhccCCEEEccCCCeec
Confidence 53 55555555555543
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.3e-29 Score=267.64 Aligned_cols=246 Identities=14% Similarity=0.163 Sum_probs=147.6
Q ss_pred cEEEccCCcccccCchhhcCCCCCCEEEccCCcCcc---CCC------------ccccCCCCCCEEEccCCcccccCCcC
Q 036593 69 MSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSG---SIP------------TWIGVLSKLQIMSLRNNNITGPIPNS 133 (574)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~------------~~~~~l~~L~~L~l~~~~~~~~~~~~ 133 (574)
+.++++++... .....+..+++|++|+++++.... ..| .....+++|++|+++++.+.+..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 35666655432 223457889999999999975221 111 11346889999999998877554444
Q ss_pred CC-CCCCCceeecccc-cCccc-CchhccCCCCCCEEEccCCcCCcCCCccc----cCCCCCCEEEccCCc--ccc-cCc
Q 036593 134 LF-NLSKLEMLQASFN-VIDGN-IPSGIGNLSNLFDLDLRHNNLQDQIPTEI----GNLQNLESLALGTNN--LSG-LIP 203 (574)
Q Consensus 134 ~~-~l~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~--~~~-~~~ 203 (574)
+. .+++|++|++++| .+... ++..+.++++|++|++++|.+.+..+..+ ..+++|++|+++.+. +.. ...
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 54 5889999999988 44322 33444578999999999988765544444 366789999998886 221 111
Q ss_pred hhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccc-------eecCCcCccCCCCccEE-eCCCCceeecC
Q 036593 204 PAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL-------IGTIPDSLTNASKLIGL-DLGSNSFSGHI 275 (574)
Q Consensus 204 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------~~~~~~~~~~~~~L~~L-~l~~~~~~~~~ 275 (574)
.....+++|++|++++|.....++..+. .+++|+.|+++.+.. .. .+..+..+++|+.+ .+.+... ...
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l 281 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQ-RAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYL 281 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHH-HCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHh-cCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhH
Confidence 2234568899999988832223444333 678888888665431 11 11234566666666 3333221 122
Q ss_pred CCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCC
Q 036593 276 PNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSN 325 (574)
Q Consensus 276 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 325 (574)
+..+..+++|++|++++|.+.... +...+..+++|++|+++++
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~-------l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYD-------LVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHH-------HHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHhhCCCCEEEccCCCCCHHH-------HHHHHhcCCCcCEEeCcCc
Confidence 333335666777777666643221 1222445666666666655
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=3.9e-25 Score=209.95 Aligned_cols=206 Identities=21% Similarity=0.221 Sum_probs=102.3
Q ss_pred CCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCC-CcccCCcCccccCCCCeE
Q 036593 315 RKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFND-LNGTIPTSVGTLQQLQGL 393 (574)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L 393 (574)
+++++|+++++.++...+..+..+. +++.|+++++.+....+..+..+++|++|++++|. +....+..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4566666666665544433333222 44444444444443333344444444444444443 333333334444444444
Q ss_pred eccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCcc
Q 036593 394 SLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSN 473 (574)
Q Consensus 394 ~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 473 (574)
++++|++++ ..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..
T Consensus 111 ~l~~n~l~~------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 111 HLDRCGLQE------------------LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp ECTTSCCCC------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ECCCCcCCE------------------ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 444443331 22344455555555555555555444444555555555555555555444444
Q ss_pred ccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 474 VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 474 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 555555555555555555444555555555555555555555443344555555555555555554
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.4e-24 Score=220.14 Aligned_cols=246 Identities=22% Similarity=0.227 Sum_probs=144.8
Q ss_pred ccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhcc
Q 036593 261 LIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSA 340 (574)
Q Consensus 261 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 340 (574)
...++..+..++ ..|..+. ++++.|++++|.+...... .+..+++|++|++++|.++..
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~--------~~~~l~~L~~L~Ls~n~i~~~---------- 114 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQAD--------TFRHLHHLEVLQLGRNSIRQI---------- 114 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTT--------TTTTCTTCCEEECCSSCCCEE----------
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHH--------HcCCCCCCCEEECCCCccCCc----------
Confidence 445666665555 2343332 4677777777766654322 256666777777766665543
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG 420 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~ 420 (574)
.+..|..+++|++|++++|.++...+..|..+++|++|++++|+++.
T Consensus 115 ---------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------ 161 (452)
T 3zyi_A 115 ---------------EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES------------------ 161 (452)
T ss_dssp ---------------CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------
T ss_pred ---------------ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce------------------
Confidence 33445555666666666666665555555566666666666665542
Q ss_pred cCCccCcCCCCCCeEECCCC-eecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCccccc
Q 036593 421 HIPPCLASLTSLRELRLGSN-KLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIG 499 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 499 (574)
..+..|..+++|++|++++| .+.......+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..|.
T Consensus 162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 239 (452)
T 3zyi_A 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFH 239 (452)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCccccc
Confidence 22334556666666666663 33323334555666666666666666543 2355566666666666666655566666
Q ss_pred CCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcc
Q 036593 500 ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNML 562 (574)
Q Consensus 500 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~ 562 (574)
++++|+.|++++|.+.+..+..|..+++|+.|++++|++....+..|..+++|+.|++++|++
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 666666666666666665566666666666666666666655555566666666666666654
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=218.98 Aligned_cols=248 Identities=21% Similarity=0.227 Sum_probs=132.6
Q ss_pred ccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhcc
Q 036593 261 LIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSA 340 (574)
Q Consensus 261 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 340 (574)
...++..+..++ ..|..+. ++++.|++++|.+...... .+..+++|++|++++|.+....+..+..+.
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~--------~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~- 112 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVN--------SFKHLRHLEILQLSRNHIRTIEIGAFNGLA- 112 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTT--------TTSSCSSCCEEECCSSCCCEECGGGGTTCS-
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHH--------HhhCCCCCCEEECCCCcCCccChhhccCCc-
Confidence 556777776666 3444443 5788888888887765433 377788888888888877755444443332
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG 420 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~ 420 (574)
+|+.|++++|.+....+..+..+++|++|++++|.+.......|..+++|++|++++|+....
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~----------------- 175 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY----------------- 175 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-----------------
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce-----------------
Confidence 455555555544443333444455555555555544444444444445555555444322111
Q ss_pred cCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccC
Q 036593 421 HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA 500 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 500 (574)
..+..|..+++|++|++++|.++ ..+ .+..+++|++|++++|.+.+..+..|..+++|+.|++++|++....+..|.+
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred eCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 12233445555555555555554 222 2444555555555555555544555555555555555555555444455555
Q ss_pred CCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 501 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 501 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+++|++|+|++|+++...+..|..+++|+.|++++|++.
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 555555555555555444444555555555555555544
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=7.1e-29 Score=261.88 Aligned_cols=457 Identities=12% Similarity=0.085 Sum_probs=274.9
Q ss_pred CCCccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccC---------------chhhcCCC
Q 036593 26 TNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHL---------------PNELGKLG 90 (574)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~---------------~~~~~~~~ 90 (574)
+..+.+|..+.. ...++++++..... .....+..+++|++|+++++.....+ ......++
T Consensus 31 s~vck~W~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~ 105 (594)
T 2p1m_B 31 SLVCKSWYEIER----WCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105 (594)
T ss_dssp HTSCHHHHHHHH----HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhh----hhceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence 355667766522 12345666554332 22345678899999999998633211 12345789
Q ss_pred CCCEEEccCCcCccCCCcccc-CCCCCCEEEccCC-ccccc-CCcCCCCCCCCceeecccccCcccCchhc----cCCCC
Q 036593 91 RLKFISFSFNKLSGSIPTWIG-VLSKLQIMSLRNN-NITGP-IPNSLFNLSKLEMLQASFNVIDGNIPSGI----GNLSN 163 (574)
Q Consensus 91 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~ 163 (574)
+|++|++++|.+.+..+..+. .+++|++|++++| .+... .+..+..+++|++|++++|.+.+..+..+ ..+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 999999999998877666675 6999999999998 44422 33334579999999999998764433333 47789
Q ss_pred CCEEEccCCc--CCcC-CCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCc-------ccccCCchhhcC
Q 036593 164 LFDLDLRHNN--LQDQ-IPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQ-------FSGRLPSTIGHS 233 (574)
Q Consensus 164 L~~L~l~~~~--~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~ 233 (574)
|++|+++++. +... ....+..+++|++|++++|......+..+..+++|++|++..+. +. .++..+ ..
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l-~~ 263 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL-SG 263 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH-HT
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH-hc
Confidence 9999999986 2211 11223457999999999984333466778889999999976553 22 233344 37
Q ss_pred CCCcCee-ecccccceecCCcCccCCCCccEEeCCCCceeecCC-CCccCCCcCceEEccCCcccccCCCCccccccccc
Q 036593 234 LPNIEYL-TLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIP-NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSL 311 (574)
Q Consensus 234 l~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 311 (574)
+++|+.+ .+..... ...+..+..+++|++|++++|.+..... ..+..+++|++|++++| +...+ +....
T Consensus 264 ~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~-------l~~l~ 334 (594)
T 2p1m_B 264 CKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAG-------LEVLA 334 (594)
T ss_dssp CTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHH-------HHHHH
T ss_pred CCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHH-------HHHHH
Confidence 8899988 3332221 1223334467899999999998664322 23567899999999987 33221 22223
Q ss_pred cCCCCCcEEEccCC---------CCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCc
Q 036593 312 TNCRKLSYLVLDSN---------PLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPT 382 (574)
Q Consensus 312 ~~~~~L~~L~l~~~---------~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 382 (574)
..+++|++|++.++ .+++.....+ ...+++|+.|.+..+.+++....
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l------------------------~~~~~~L~~L~~~~~~l~~~~~~ 390 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSV------------------------SMGCPKLESVLYFCRQMTNAALI 390 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH------------------------HHHCTTCCEEEEEESCCCHHHHH
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHH------------------------HHhchhHHHHHHhcCCcCHHHHH
Confidence 45889999998543 2221111111 12356666776666666544333
Q ss_pred Ccc-ccCCCCeEecc--C----CcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccC-CC
Q 036593 383 SVG-TLQQLQGLSLE--D----NNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWS-LE 454 (574)
Q Consensus 383 ~~~-~~~~L~~L~l~--~----~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~ 454 (574)
.+. .+++|++|+++ + +.+++. | ....++..+..+++|+.|++++ .++......+.. ++
T Consensus 391 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~-~------------~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 391 TIARNRPNMTRFRLCIIEPKAPDYLTLE-P------------LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK 456 (594)
T ss_dssp HHHHHCTTCCEEEEEESSTTCCCTTTCC-C------------THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred HHHhhCCCcceeEeecccCCCcccccCC-c------------hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence 333 46677777776 2 233310 0 0001112244566777777765 444333333333 66
Q ss_pred CCCeEeCCCCcceecCCccc-cCCCCCCEEeCCCCcccccCcc-cccCCCCCCEeeCCCCcccccCCccc-cCCcCCCee
Q 036593 455 YILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPS-TIGALVDLETLSLASNQFQGPIPESV-GSLISLESL 531 (574)
Q Consensus 455 ~L~~L~L~~~~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L 531 (574)
+|++|++++|.+++.....+ ..+++|++|++++|.+++.... ....+++|++|++++|+++......+ ..++.|+..
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~ 536 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE 536 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEE
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEE
Confidence 67777777776654433333 4567777777777776533322 33446677777777776654333333 344555554
Q ss_pred eCCCC
Q 036593 532 DLSGN 536 (574)
Q Consensus 532 ~l~~n 536 (574)
.+..+
T Consensus 537 ~~~~~ 541 (594)
T 2p1m_B 537 VIDER 541 (594)
T ss_dssp EECSS
T ss_pred EecCC
Confidence 44444
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=220.10 Aligned_cols=258 Identities=21% Similarity=0.243 Sum_probs=217.0
Q ss_pred CCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEE
Q 036593 41 HQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMS 120 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 120 (574)
.+++++|+++++.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|++.+..+..++++++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 36899999999999987777899999999999999999888788899999999999999999976666799999999999
Q ss_pred ccCCcccccCC-cCCCCCCCCceeeccccc-CcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcc
Q 036593 121 LRNNNITGPIP-NSLFNLSKLEMLQASFNV-IDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNL 198 (574)
Q Consensus 121 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 198 (574)
+++|.+....+ ..+..+++|++|++++|. +....+..+.++++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999984433 478899999999999984 6656677899999999999999999988889999999999999999998
Q ss_pred cccCchhhcccCCCcEEEcccCcccccCCchhh--cCCCCcCeeecccccceec----CCcCccCCCCccEEeCCCCcee
Q 036593 199 SGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIG--HSLPNIEYLTLAINNLIGT----IPDSLTNASKLIGLDLGSNSFS 272 (574)
Q Consensus 199 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 272 (574)
.......+..+++|+.|++++|.+.+..+..+. ...+.++.++++.+.+... .+..+..+++|++|++++|.++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 755445556789999999999998854433322 2356788888887766542 3456778999999999999998
Q ss_pred ecCCCCccCCCcCceEEccCCccccc
Q 036593 273 GHIPNTFGNLRHLNVLSIRTNNLTTE 298 (574)
Q Consensus 273 ~~~~~~l~~l~~L~~L~l~~~~~~~~ 298 (574)
......|..+++|++|++++|++...
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 55445568999999999999998764
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=5.5e-25 Score=212.61 Aligned_cols=237 Identities=19% Similarity=0.257 Sum_probs=176.9
Q ss_pred CCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceee
Q 036593 65 LSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQ 144 (574)
Q Consensus 65 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 144 (574)
.+++++|++++|.+. .+|..+..+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467888888888876 66777777888888888888887 77778888888888888888887 6677778888888888
Q ss_pred cccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccc
Q 036593 145 ASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224 (574)
Q Consensus 145 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 224 (574)
+++|...+.+|..+.. . .....+.++++|++|++++|.+. .+|..+..+++|++|++++|.+.
T Consensus 157 L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp EEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred CCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence 8887766666654433 0 01122444666666666666665 44555666667777777776666
Q ss_pred cCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCcc
Q 036593 225 RLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQ 304 (574)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 304 (574)
.+|..+. .+++|++|++++|.+....+..+..+++|++|++++|.+.+..|..+.++++|+.|++++|++...
T Consensus 220 ~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~------ 292 (328)
T 4fcg_A 220 ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR------ 292 (328)
T ss_dssp CCCGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC------
T ss_pred cCchhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh------
Confidence 4555443 667777777777777666777788889999999999988888898999999999999999987764
Q ss_pred ccccccccCCCCCcEEEccCCCCCCC
Q 036593 305 WSFLSSLTNCRKLSYLVLDSNPLGGI 330 (574)
Q Consensus 305 ~~~~~~l~~~~~L~~L~l~~~~~~~~ 330 (574)
++..+..+++++.+++..+.+...
T Consensus 293 --iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 293 --LPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp --CCGGGGGSCTTCEEECCGGGSCC-
T ss_pred --ccHHHhhccCceEEeCCHHHHHHH
Confidence 456689999999999987765544
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.5e-24 Score=204.45 Aligned_cols=225 Identities=20% Similarity=0.208 Sum_probs=165.2
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 124 (574)
+++++++.+++. +|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 678888888874 55544 468999999999988777778899999999999999988888888999999999999998
Q ss_pred c-ccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCc
Q 036593 125 N-ITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIP 203 (574)
Q Consensus 125 ~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 203 (574)
. +....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 765557778888888888888888876667777888888888888888776666667777788888887777766555
Q ss_pred hhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCC
Q 036593 204 PAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLR 283 (574)
Q Consensus 204 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 283 (574)
..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..++
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHP-------------------------HAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECT-------------------------TTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HHhcCccccCEEECCCCcccccCH-------------------------hHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 556666666666666666553333 3444455555555555555544444455566
Q ss_pred cCceEEccCCcccc
Q 036593 284 HLNVLSIRTNNLTT 297 (574)
Q Consensus 284 ~L~~L~l~~~~~~~ 297 (574)
+|+.|++++|++..
T Consensus 226 ~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 226 ALQYLRLNDNPWVC 239 (285)
T ss_dssp TCCEEECCSSCEEC
T ss_pred ccCEEeccCCCccC
Confidence 66666666666554
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.6e-26 Score=220.80 Aligned_cols=247 Identities=19% Similarity=0.201 Sum_probs=114.4
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCccc-ccCchhhc-------CCCCCCEEEccCCcCccCCCccc--cC
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFY-GHLPNELG-------KLGRLKFISFSFNKLSGSIPTWI--GV 112 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--~~ 112 (574)
+++.++++++.+ .+|..+... |++|++++|.+. ..++..+. ++++|++|++++|++.+..|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 344444555554 334333322 555555555552 23333333 45555555555555555555443 55
Q ss_pred CCCCCEEEccCCcccccCCcCCCCC-----CCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcC--CCccc--c
Q 036593 113 LSKLQIMSLRNNNITGPIPNSLFNL-----SKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ--IPTEI--G 183 (574)
Q Consensus 113 l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l--~ 183 (574)
+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..++++++|++|++++|.+... .+..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 55555555555555533 4434333 4555555555555444444455555555555555543321 11111 4
Q ss_pred CCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCC-cCccCCCCcc
Q 036593 184 NLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP-DSLTNASKLI 262 (574)
Q Consensus 184 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~ 262 (574)
.+++|++|++++|.+... ...+..++..+++|+.|++++|.+....+ ..+..+++|+
T Consensus 199 ~l~~L~~L~L~~N~l~~~----------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETP----------------------SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp SCTTCCEEECTTSCCCCH----------------------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred cCCCCCEEECCCCcCcch----------------------HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 445555555555544411 01122222234444444444444443321 2233445555
Q ss_pred EEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCC
Q 036593 263 GLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGG 329 (574)
Q Consensus 263 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 329 (574)
+|++++|.++ ..|..+. ++|++|++++|.++..+ .+..+++|++|++++|++++
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p----------~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNP----------SPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCC----------CTTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCCh----------hHhhCCCCCEEeccCCCCCC
Confidence 5555555554 3333333 55555555555554431 14445555556665555543
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=5.8e-23 Score=213.31 Aligned_cols=260 Identities=27% Similarity=0.340 Sum_probs=166.1
Q ss_pred CcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCC
Q 036593 236 NIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCR 315 (574)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (574)
+++.++++++.+.. .+..+. ++|++|++++|.++. .+. .+++|++|++++|.++..+. .++
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~------------~l~ 101 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV------------LPP 101 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC------------CCT
T ss_pred CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC------------CCC
Confidence 46777777776663 333333 567777777776663 332 45677777777776654321 356
Q ss_pred CCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEec
Q 036593 316 KLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSL 395 (574)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 395 (574)
+|++|++++|.++.... .+++|+.|++++|.++.... .+++|++|++
T Consensus 102 ~L~~L~Ls~N~l~~l~~-----------------------------~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~L 148 (622)
T 3g06_A 102 GLLELSIFSNPLTHLPA-----------------------------LPSGLCKLWIFGNQLTSLPV----LPPGLQELSV 148 (622)
T ss_dssp TCCEEEECSCCCCCCCC-----------------------------CCTTCCEEECCSSCCSCCCC----CCTTCCEEEC
T ss_pred CCCEEECcCCcCCCCCC-----------------------------CCCCcCEEECCCCCCCcCCC----CCCCCCEEEC
Confidence 66677776666654322 33455555555555543221 1255555555
Q ss_pred cCCcccc--cCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCcc
Q 036593 396 EDNNLEG--SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSN 473 (574)
Q Consensus 396 ~~~~~~~--~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 473 (574)
++|++++ ..+..++.|++++|.+++ +| ..+++|+.|++++|.+++ ++. .+++|+.|++++|.+... +.
T Consensus 149 s~N~l~~l~~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~~- 218 (622)
T 3g06_A 149 SDNQLASLPALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL-PA- 218 (622)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-CC-
T ss_pred cCCcCCCcCCccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc-CC-
Confidence 5555543 233455566666665553 44 346788888888888864 332 246788888888887643 32
Q ss_pred ccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCC
Q 036593 474 VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLK 553 (574)
Q Consensus 474 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 553 (574)
.+++|++|++++|.++. ++ ..+++|+.|++++|.++ .+|. .+++|+.|++++|++. .+|..|..+++|+
T Consensus 219 --~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~ 287 (622)
T 3g06_A 219 --LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSET 287 (622)
T ss_dssp --CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred --CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccC
Confidence 24778888888888874 33 44678888888888887 4444 5578888888888888 5677788888888
Q ss_pred eEeccCCccccccCC
Q 036593 554 QFNVSQNMLEGEIPV 568 (574)
Q Consensus 554 ~l~l~~n~~~~~~p~ 568 (574)
.|++++|++++.+|.
T Consensus 288 ~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 288 TVNLEGNPLSERTLQ 302 (622)
T ss_dssp EEECCSCCCCHHHHH
T ss_pred EEEecCCCCCCcCHH
Confidence 888888888877654
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.5e-23 Score=197.07 Aligned_cols=215 Identities=22% Similarity=0.255 Sum_probs=169.8
Q ss_pred CCccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCC
Q 036593 27 NMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106 (574)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 106 (574)
.+.|.|.|..|.- ....+.+++++++++. +|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+....
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 4789999888753 3456789999999984 666554 68999999999998766778999999999999999998777
Q ss_pred CccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCC
Q 036593 107 PTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQ 186 (574)
Q Consensus 107 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 186 (574)
+..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 77789999999999999999866666778899999999999988876667788888999999998888876666788888
Q ss_pred CCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeeccccc
Q 036593 187 NLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINN 246 (574)
Q Consensus 187 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 246 (574)
+|++|++++|.+....+..|..+++|++|++++|.+. .++...+..+++|+.|++++|.
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCC
Confidence 8888888888887766666777778888888777766 4443333345555555555443
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.6e-25 Score=215.68 Aligned_cols=239 Identities=21% Similarity=0.175 Sum_probs=135.1
Q ss_pred CCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCcccccccccc
Q 036593 233 SLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLT 312 (574)
Q Consensus 233 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 312 (574)
.+++|++|++++|.+....+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... .
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-------------~ 96 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-------------L 96 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-------------E
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-------------c
Confidence 33444555555444444333445555555566665555543332 55566666666666655432 2
Q ss_pred CCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCe
Q 036593 313 NCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQG 392 (574)
Q Consensus 313 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 392 (574)
..++|++|++++|.++... ...+++|++|++++|.+++..+..+..+++|++
T Consensus 97 ~~~~L~~L~l~~n~l~~~~----------------------------~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 97 VGPSIETLHAANNNISRVS----------------------------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp ECTTCCEEECCSSCCSEEE----------------------------ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred CCCCcCEEECCCCccCCcC----------------------------ccccCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence 2355666666655544221 112455666777766666655556666666666
Q ss_pred EeccCCcccccCCCCCceEEccCCeeeecCCccC-cCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCC
Q 036593 393 LSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCL-ASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLP 471 (574)
Q Consensus 393 L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 471 (574)
|++++|++++.. +..+ ..+++|++|++++|.+++... ...+++|++|++++|.+.+..+
T Consensus 149 L~Ls~N~l~~~~------------------~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 149 LDLKLNEIDTVN------------------FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp EECTTSCCCEEE------------------GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG
T ss_pred EECCCCCCCccc------------------HHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchh
Confidence 666666665321 1222 345667777777776654321 2235666677776666654433
Q ss_pred ccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccc-ccCCccccCCcCCCeeeCCCC
Q 036593 472 SNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQ-GPIPESVGSLISLESLDLSGN 536 (574)
Q Consensus 472 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n 536 (574)
. +..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+. +..+..+..+++|+.+++++|
T Consensus 209 ~-~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 209 E-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp G-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred h-hcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 3 5666667777777776663 4455666667777777777666 445555666666666666644
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=3.1e-25 Score=213.27 Aligned_cols=199 Identities=20% Similarity=0.231 Sum_probs=149.7
Q ss_pred CCCCCcEEECcCCCCcccCCcCc--cccCCCCeEeccCCcccccC----------CCCCceEEccCCeeeecCCccCcCC
Q 036593 362 NLRGLILLTLDFNDLNGTIPTSV--GTLQQLQGLSLEDNNLEGSI----------PYDLCHLELNGNKLSGHIPPCLASL 429 (574)
Q Consensus 362 ~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~----------~~~l~~l~l~~~~l~~~~~~~~~~~ 429 (574)
.+++|++|++++|.+++..+..+ ..+++|++|++++|++++.. +..+++|++++|++++..+..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 45556666666666555444443 55566666666666555430 1456666666666665666889999
Q ss_pred CCCCeEECCCCeeccc--CCcc--ccCCCCCCeEeCCCCcceec---CCccccCCCCCCEEeCCCCcccccCc-ccccCC
Q 036593 430 TSLRELRLGSNKLTSS--IPSS--LWSLEYILEINLSSNSLNDS---LPSNVQKLKVLRVLDLSRNQLSGNIP-STIGAL 501 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~--~~~~--~~~~~~L~~L~L~~~~l~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~ 501 (574)
++|++|++++|++.+. .+.. +..+++|++|++++|.+.+. ....+..+++|++|++++|.+.+..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 9999999999997643 2223 37899999999999999732 22445678999999999999987653 456678
Q ss_pred CCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccc
Q 036593 502 VDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 502 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~ 565 (574)
++|++|++++|+++ .+|..+. ++|+.|++++|++... |. +..+++|++|++++|++++.
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 99999999999999 6777766 8999999999999965 65 89999999999999999863
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.5e-24 Score=208.91 Aligned_cols=239 Identities=21% Similarity=0.185 Sum_probs=136.3
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEcc
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (574)
++...+++.+.+.......+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 44555666666655555555566677777777777766666677777777777777777664433 6677777777777
Q ss_pred CCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccC
Q 036593 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLI 202 (574)
Q Consensus 123 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 202 (574)
+|.+.+. + ..++|++|++++|.+.+..+. .+++|++|++++|.+....+..+..+++|++|++++|.+....
T Consensus 89 ~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 7766522 1 225666666666665533222 2455566666655555444444555555555555555554443
Q ss_pred chhhc-ccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccC
Q 036593 203 PPAIF-NISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281 (574)
Q Consensus 203 ~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 281 (574)
+..+. .+++|++|++++|.+ .... ....+++|++|++++|.++.. +..+..
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l-------------------------~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~ 212 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFI-------------------------YDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQS 212 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCC-------------------------CEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGG
T ss_pred HHHHhhccCcCCEEECCCCcC-------------------------cccc--cccccccCCEEECCCCcCCcc-hhhhcc
Confidence 33332 344555555555444 3331 122355566666666666543 223556
Q ss_pred CCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCC
Q 036593 282 LRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLG 328 (574)
Q Consensus 282 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 328 (574)
+++|+.|++++|.+... ...+..+++|+.|++++|++.
T Consensus 213 l~~L~~L~L~~N~l~~l---------~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 213 AAGVTWISLRNNKLVLI---------EKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GTTCSEEECTTSCCCEE---------CTTCCCCTTCCEEECTTCCCB
T ss_pred cCcccEEECcCCcccch---------hhHhhcCCCCCEEEccCCCcc
Confidence 66666666666666542 223555666666666666665
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.3e-22 Score=210.58 Aligned_cols=267 Identities=25% Similarity=0.305 Sum_probs=141.1
Q ss_pred CCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeec
Q 036593 163 NLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTL 242 (574)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 242 (574)
++++|+++++.++ ..|..+. ++|++|++++|.+.. +|. .+++|++|++++|.+. .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence 5777777777776 3344333 667777777776653 232 3566777777766655 3443 3455555555
Q ss_pred ccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEc
Q 036593 243 AINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVL 322 (574)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 322 (574)
++|.+..... .+++|+.|++++|.++. .|. .+++|++|++++|.+...+ ..+++|+.|++
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~------------~~~~~L~~L~L 168 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLP------------ALPSELCKLWA 168 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC------------CCCTTCCEEEC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCcC------------CccCCCCEEEC
Confidence 5555443211 33445555555544432 121 1244444444444433221 01123333333
Q ss_pred cCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccc
Q 036593 323 DSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG 402 (574)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 402 (574)
++|.++ . +| ..+++|+.|++++|.+++... ..++|+.|++++|.++
T Consensus 169 ~~N~l~-------------------------~-l~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~- 214 (622)
T 3g06_A 169 YNNQLT-------------------------S-LP---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT- 214 (622)
T ss_dssp CSSCCS-------------------------C-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-
T ss_pred CCCCCC-------------------------C-Cc---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-
Confidence 333322 1 11 233555555665555543211 1244555555555444
Q ss_pred cCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCE
Q 036593 403 SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRV 482 (574)
Q Consensus 403 ~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~ 482 (574)
.++. .+++|+.|++++|.+++ ++ ..+++|++|++++|.+.. +|. .+++|++
T Consensus 215 ------------------~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~ 265 (622)
T 3g06_A 215 ------------------SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLS 265 (622)
T ss_dssp ------------------SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred ------------------ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcE
Confidence 2222 23667777777777763 33 345677777777777653 232 4567777
Q ss_pred EeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCC
Q 036593 483 LDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL 525 (574)
Q Consensus 483 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~ 525 (574)
|++++|.+. .+|..+.++++|+.|+|++|.+.+..+..+..+
T Consensus 266 L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp EECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred EeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 777777777 445667777777777777777766555544433
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=7.2e-23 Score=193.35 Aligned_cols=209 Identities=21% Similarity=0.213 Sum_probs=155.5
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG 420 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~ 420 (574)
+++.|+++++.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------ 90 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS------------------ 90 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE------------------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc------------------
Confidence 44444444444444444566777888888888888877766677778888888888777763
Q ss_pred cCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceec-CCccccCCCCCCEEeCCCCcccccCccccc
Q 036593 421 HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDS-LPSNVQKLKVLRVLDLSRNQLSGNIPSTIG 499 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 499 (574)
..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|++.+..+..+.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence 3345677788888888888888766666788888888888888888764 477788888888888888888866666676
Q ss_pred CCCCCC----EeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCC
Q 036593 500 ALVDLE----TLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 500 ~~~~L~----~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
.+++|+ +|++++|.+.+..+..+.. .+|+.|++++|.+....+..|..+++|+.|++++|++....|.
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred hhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 666666 7888888888655555444 4788888888888866556678888888888888888877663
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.9e-22 Score=189.47 Aligned_cols=203 Identities=28% Similarity=0.267 Sum_probs=134.7
Q ss_pred CCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEec
Q 036593 316 KLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSL 395 (574)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 395 (574)
..+.++++++.++.+... .+++++.|+++++.+....+..+..+++|++|++++|.++......|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~----~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN----IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSC----CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCC----CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 467888888877754321 2236677777777666555556666777777777777666555555666666776666
Q ss_pred cCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCcccc
Q 036593 396 EDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQ 475 (574)
Q Consensus 396 ~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 475 (574)
++|+++. ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+..+.
T Consensus 93 ~~n~l~~------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 93 TDNKLQA------------------LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp CSSCCCC------------------CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCcCCc------------------CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 6666552 2224456667777777777777666666666777777777777777665555566
Q ss_pred CCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 476 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
.+++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|+.|++++|++..
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 77777777777777765555566667777777777777775555556667777777777777653
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.6e-22 Score=190.97 Aligned_cols=223 Identities=22% Similarity=0.225 Sum_probs=160.6
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCc
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNN 125 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 125 (574)
.+++++..+. .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4566666665 3565554 589999999999887767788899999999999999887777788999999999999998
Q ss_pred ccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcC-CCccccCCCCCCEEEccCCcccccCch
Q 036593 126 ITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ-IPTEIGNLQNLESLALGTNNLSGLIPP 204 (574)
Q Consensus 126 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~ 204 (574)
+....+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+... .+..+..+++|++|++++|.+....+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 8877777788889999999988888765555688888888888888888754 477788888888888888888776666
Q ss_pred hhcccCCCc----EEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCcc
Q 036593 205 AIFNISTIR----VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFG 280 (574)
Q Consensus 205 ~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 280 (574)
.+..+++|+ .|++++|.+. .++...+ ... +|++|++++|.++...+..+.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~-~~~------------------------~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEI------------------------RLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCC-EECTTSS-CSC------------------------CEEEEECCSSCCSCCCTTTTT
T ss_pred HhhhhhhccccceeeecCCCccc-ccCcccc-CCC------------------------cccEEECCCCceeecCHhHhc
Confidence 666666665 6667666665 2222222 122 455555555555444444445
Q ss_pred CCCcCceEEccCCcccc
Q 036593 281 NLRHLNVLSIRTNNLTT 297 (574)
Q Consensus 281 ~l~~L~~L~l~~~~~~~ 297 (574)
.+++|+.|++++|++..
T Consensus 222 ~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TCCSCCEEECCSSCBCC
T ss_pred ccccccEEEccCCcccc
Confidence 55556666665555543
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.6e-23 Score=210.77 Aligned_cols=219 Identities=19% Similarity=0.182 Sum_probs=116.1
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCC
Q 036593 312 TNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQ 391 (574)
Q Consensus 312 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 391 (574)
..+++|++|++++|.++...+..+..+. +|+.|++++|.+....+ +..+++|++|++++|.+++.. ..++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence 3455788888888877766555554443 55555555555554333 555555555555555554321 225555
Q ss_pred eEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCC
Q 036593 392 GLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLP 471 (574)
Q Consensus 392 ~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 471 (574)
+|++++|.+++ ..+. .+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 103 ~L~L~~N~l~~------------------~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 103 TLHAANNNISR------------------VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp EEECCSSCCCC------------------EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred EEECcCCcCCC------------------CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 55555555543 2221 23455555555555554444455555555555555555555444
Q ss_pred cccc-CCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCC
Q 036593 472 SNVQ-KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALS 550 (574)
Q Consensus 472 ~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 550 (574)
..+. .+++|++|++++|.+.+.. ....+++|+.|++++|.+++. |..+..+++|+.|++++|.+.. +|..+..++
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~ 237 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQ 237 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCT
T ss_pred HHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCC
Confidence 4443 4555555555555555331 122355555555555555532 2235555555555555555552 444455555
Q ss_pred CCCeEeccCCccc
Q 036593 551 HLKQFNVSQNMLE 563 (574)
Q Consensus 551 ~L~~l~l~~n~~~ 563 (574)
+|+.|++++|++.
T Consensus 238 ~L~~L~l~~N~l~ 250 (487)
T 3oja_A 238 NLEHFDLRGNGFH 250 (487)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEcCCCCCc
Confidence 5555555555554
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.4e-23 Score=213.85 Aligned_cols=239 Identities=20% Similarity=0.177 Sum_probs=188.7
Q ss_pred ccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCc
Q 036593 279 FGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPK 358 (574)
Q Consensus 279 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 358 (574)
...+++|+.|++++|.+..... ..+..+++|++|++++|.+++..+ +..+ ++|+.|++++|.+...
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l--- 95 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISA--------ADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQEL--- 95 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCG--------GGGTTCTTCCEEECTTSCCEEEEE--CTTC-TTCCEEECCSSEEEEE---
T ss_pred cccCCCccEEEeeCCcCCCCCH--------HHHhCCCCCCEEEeeCCCCCCCcc--cccC-CCCCEEEecCCcCCCC---
Confidence 3455699999999999887532 348899999999999999986554 4443 4999999999998853
Q ss_pred cccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECC
Q 036593 359 EIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLG 438 (574)
Q Consensus 359 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~ 438 (574)
...++|++|++++|.+++..+. .+++|++|++++|++++ ..+..+..+++|+.|+++
T Consensus 96 --~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~------------------~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 96 --LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM------------------LRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp --EECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS------------------GGGBCGGGGSSEEEEECT
T ss_pred --CCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC------------------CCchhhcCCCCCCEEECC
Confidence 2348999999999999876543 45788888888888775 334566778889999999
Q ss_pred CCeecccCCcccc-CCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccccc
Q 036593 439 SNKLTSSIPSSLW-SLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGP 517 (574)
Q Consensus 439 ~n~~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 517 (574)
+|.+++..+..+. .+++|++|+|++|.+.+..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.++ .
T Consensus 153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~ 228 (487)
T 3oja_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-L 228 (487)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-E
T ss_pred CCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-c
Confidence 9988877776665 68899999999998876633 3458899999999999886544 4788899999999999988 4
Q ss_pred CCccccCCcCCCeeeCCCCccc-ccCCcCcccCCCCCeEecc
Q 036593 518 IPESVGSLISLESLDLSGNNFS-GKIPKSLEALSHLKQFNVS 558 (574)
Q Consensus 518 ~~~~l~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~l~l~ 558 (574)
+|..+..+++|+.|++++|++. ...|..+..++.|+.++++
T Consensus 229 lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 6777888889999999999887 4555667777777777775
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1e-22 Score=191.45 Aligned_cols=183 Identities=27% Similarity=0.257 Sum_probs=128.0
Q ss_pred ccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCC
Q 036593 360 IGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGS 439 (574)
Q Consensus 360 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 439 (574)
+..+++|++|++++|.+.+. ..+..+++|++|++++|++++ ..+..+..+++|++|++++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~------------------~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS------------------LPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC------------------CCTTTTTTCTTCCEEECTT
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc------------------cChhHhcCCcCCCEEECCC
Confidence 45667777777777776643 356667777777777776663 2334456677777777777
Q ss_pred CeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCC
Q 036593 440 NKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIP 519 (574)
Q Consensus 440 n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 519 (574)
|++.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 77776666667777777777777777776666666777777777777777776666666777777777777777776666
Q ss_pred ccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCC
Q 036593 520 ESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVK 569 (574)
Q Consensus 520 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~ 569 (574)
..+..+++|+.|++++|++.+ .+++|+.++++.|+++|.+|..
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred HHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence 667777777777777777652 3456777777777777777754
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5e-22 Score=188.11 Aligned_cols=203 Identities=25% Similarity=0.233 Sum_probs=128.7
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCC
Q 036593 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390 (574)
Q Consensus 311 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 390 (574)
+..++++++++++++.++.+.... ++.++.|+++++.+....+..+..+++|++|++++|.+++.... ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCC----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 566778888888888877553321 23556666666665555555555666666666666655543222 455555
Q ss_pred CeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecC
Q 036593 391 QGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSL 470 (574)
Q Consensus 391 ~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~ 470 (574)
++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+....
T Consensus 80 ~~L~Ls~N~l~-------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 80 GTLDLSHNQLQ-------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp CEEECCSSCCS-------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred CEEECCCCcCC-------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence 55555555554 34455566677777777777776555566666777777777777776665
Q ss_pred CccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 471 PSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 471 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+..|..+++|+.|++++|++....+..|.++++|+.|++++|+++ .+|..+...++|+.|++++|++.
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 566666677777777777776555555666677777777777776 55555555666777777777665
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.6e-21 Score=181.85 Aligned_cols=187 Identities=25% Similarity=0.271 Sum_probs=166.9
Q ss_pred ccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCC
Q 036593 360 IGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGS 439 (574)
Q Consensus 360 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 439 (574)
...+++|+.++++++.+... ..+..+++|++|++++|++++ + ..+..+++|++|++++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-------------------~-~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-------------------I-SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-------------------C-GGGTTCTTCCEEECTT
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-------------------c-hhhcCCCCCCEEECCC
Confidence 45778899999999988743 357889999999999998873 2 3577899999999999
Q ss_pred CeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCC
Q 036593 440 NKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIP 519 (574)
Q Consensus 440 n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 519 (574)
|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 99997777888999999999999999998888888999999999999999997777778999999999999999997777
Q ss_pred ccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCC
Q 036593 520 ESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 520 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
..+..+++|+.|++++|++....+..+..+++|+.|++++|++.+..|.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 7789999999999999999987777899999999999999999998884
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.9e-24 Score=213.38 Aligned_cols=136 Identities=19% Similarity=0.322 Sum_probs=59.8
Q ss_pred CCCCeEECCCCeeccc-CC---ccccCCCCCCeEeCCCCcceec-----CCccccCCCCCCEEeCCCCccc----ccCcc
Q 036593 430 TSLRELRLGSNKLTSS-IP---SSLWSLEYILEINLSSNSLNDS-----LPSNVQKLKVLRVLDLSRNQLS----GNIPS 496 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~-~~---~~~~~~~~L~~L~L~~~~l~~~-----~~~~~~~l~~L~~L~l~~n~~~----~~~~~ 496 (574)
++|++|++++|+++.. .+ ..+..+++|++|++++|.+... .+..+..+++|++|++++|.+. ..++.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 4444555555444311 11 2333444555555555544321 1223444455555555555542 22333
Q ss_pred cccCCCCCCEeeCCCCccccc----CCccccC--CcCCCeeeCCCCcccc----cCCcCc-ccCCCCCeEeccCCccccc
Q 036593 497 TIGALVDLETLSLASNQFQGP----IPESVGS--LISLESLDLSGNNFSG----KIPKSL-EALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 497 ~~~~~~~L~~L~l~~n~~~~~----~~~~l~~--~~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~l~l~~n~~~~~ 565 (574)
.+..+++|++|+|++|.+++. ++..+.. +++|+.|++++|.++. .+|..+ .++++|+.|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 444455555555555554432 2233322 4455555555555543 233333 3345555555555555443
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=5.4e-21 Score=177.48 Aligned_cols=191 Identities=21% Similarity=0.302 Sum_probs=167.4
Q ss_pred CccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCC
Q 036593 28 MRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIP 107 (574)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 107 (574)
.|..|.|..|. ...++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCN---EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEE---GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcC---CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 46778888884 34568999999998 4666555 699999999999988888889999999999999999998888
Q ss_pred ccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCC
Q 036593 108 TWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQN 187 (574)
Q Consensus 108 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 187 (574)
..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88999999999999999999777777899999999999999998666666789999999999999998777778999999
Q ss_pred CCEEEccCCcccccCchhhcccCCCcEEEcccCcccc
Q 036593 188 LESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224 (574)
Q Consensus 188 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 224 (574)
|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 9999999999987777788889999999999998764
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=7.6e-21 Score=176.49 Aligned_cols=181 Identities=22% Similarity=0.255 Sum_probs=148.7
Q ss_pred CCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeec
Q 036593 364 RGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLT 443 (574)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 443 (574)
...++++++++.++.. +..+. +.+++|++++|+++ +..+..+..+++|++|++++|.+.
T Consensus 14 ~~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~------------------~~~~~~~~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLA------------------TLSDATFRGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp GGGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCC------------------CCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcC------------------ccCHhHhcCcccCCEEECCCCcCC
Confidence 3456777777776633 22222 45666666666655 355567888999999999999998
Q ss_pred ccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCcccc
Q 036593 444 SSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVG 523 (574)
Q Consensus 444 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 523 (574)
+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..|.++++|++|++++|++.+..+..|.
T Consensus 73 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 152 (251)
T 3m19_A 73 TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152 (251)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC
Confidence 87888888999999999999999887778888999999999999999877777788899999999999999976666889
Q ss_pred CCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccc
Q 036593 524 SLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 524 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~ 565 (574)
.+++|+.|++++|++....+..|..+++|+.|++++|++...
T Consensus 153 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999999999999999977777889999999999999998776
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.6e-20 Score=177.69 Aligned_cols=197 Identities=23% Similarity=0.260 Sum_probs=131.7
Q ss_pred CCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEE
Q 036593 41 HQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMS 120 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 120 (574)
...++++++++++++. +|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+.+..+ .+.+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred cCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence 3567777888877773 454443 577888888887776666777788888888888877764433 26777777888
Q ss_pred ccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccc
Q 036593 121 LRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSG 200 (574)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 200 (574)
+++|.+. .+|..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|+.|++++|++..
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 8777776 566666777777777777777765555667777777777777777766655666667777777777777665
Q ss_pred cCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccc
Q 036593 201 LIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAIN 245 (574)
Q Consensus 201 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 245 (574)
..+..+..+++|++|++++|.+. .+|..++ ..+.|+.+++.+|
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~N 205 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGN 205 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCC
Confidence 55555566666666666666665 4554444 3334444444444
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=185.48 Aligned_cols=201 Identities=17% Similarity=0.176 Sum_probs=149.2
Q ss_pred ccceEEeccccccccCCccc--cCCCCCcEEECcCCCCcccCC----cCccccCCCCeEeccCCcccccCCCCCceEEcc
Q 036593 341 SLQSFYAYECKLGGSIPKEI--GNLRGLILLTLDFNDLNGTIP----TSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELN 414 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~ 414 (574)
++++|++++|.+....|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------------ 159 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA------------ 159 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC------------
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch------------
Confidence 45666666666655555555 677777777777777765332 223456777777777777653
Q ss_pred CCeeeecCCccCcCCCCCCeEECCCCeeccc----CCccccCCCCCCeEeCCCCcceecCCc---cccCCCCCCEEeCCC
Q 036593 415 GNKLSGHIPPCLASLTSLRELRLGSNKLTSS----IPSSLWSLEYILEINLSSNSLNDSLPS---NVQKLKVLRVLDLSR 487 (574)
Q Consensus 415 ~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~~~l~~~~~~---~~~~l~~L~~L~l~~ 487 (574)
..+..+..+++|++|++++|++.+. ....+..+++|++|++++|.++..... .+..+++|++|++++
T Consensus 160 ------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 160 ------FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp ------CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred ------hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence 4456778899999999999987532 233446788999999999998643211 346789999999999
Q ss_pred CcccccCcccccCC---CCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcccc
Q 036593 488 NQLSGNIPSTIGAL---VDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 488 n~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~ 564 (574)
|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++... |. +..+++|+.|++++|+++.
T Consensus 234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 99987766666666 69999999999999 6676664 7999999999999853 33 6788999999999999875
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=9.1e-23 Score=200.42 Aligned_cols=261 Identities=19% Similarity=0.211 Sum_probs=128.6
Q ss_pred ecccccceecCCcCccCCCCccEEeCCCCceeecCC----CCccCCC-cCceEEccCCcccccCCCCccccccccccCC-
Q 036593 241 TLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIP----NTFGNLR-HLNVLSIRTNNLTTESSSADQWSFLSSLTNC- 314 (574)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~- 314 (574)
+++.+.+....+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+...+... +...+...
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----l~~~l~~~~ 79 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE----LVQILAAIP 79 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH----HHHHHHTSC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH----HHHHHhccC
Confidence 445555544444444444446666666666654443 4455555 5666666666655432211 11112222
Q ss_pred CCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCC-CCCcEEECcCCCCcccCCcCcc----c-cC
Q 036593 315 RKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNL-RGLILLTLDFNDLNGTIPTSVG----T-LQ 388 (574)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~----~-~~ 388 (574)
++|++|++++|.+++..+..+... +..+ ++|++|++++|.+++.....+. . .+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~---------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 138 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKT---------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHH---------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCT
T ss_pred CCccEEECcCCcCChHHHHHHHHH---------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCC
Confidence 556666666665554443333221 2233 5666666666666544333322 2 24
Q ss_pred CCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCC-CCCeEECCCCeecccCCc----cccCC-CCCCeEeCC
Q 036593 389 QLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLT-SLRELRLGSNKLTSSIPS----SLWSL-EYILEINLS 462 (574)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~----~~~~~-~~L~~L~L~ 462 (574)
+|++|++++|++++..+. .++..+..++ +|++|++++|++++..+. .+..+ ++|++|+++
T Consensus 139 ~L~~L~Ls~N~l~~~~~~--------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSD--------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp TCCEEECTTSCGGGSCHH--------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred ceeEEEccCCcCCHHHHH--------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 666666666665532110 1122223333 566666666666544332 22233 366666666
Q ss_pred CCcceec----CCccccC-CCCCCEEeCCCCcccccCc----ccccCCCCCCEeeCCCCccccc-------CCccccCCc
Q 036593 463 SNSLNDS----LPSNVQK-LKVLRVLDLSRNQLSGNIP----STIGALVDLETLSLASNQFQGP-------IPESVGSLI 526 (574)
Q Consensus 463 ~~~l~~~----~~~~~~~-l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~-------~~~~l~~~~ 526 (574)
+|.+.+. ++..+.. .++|++|++++|.+.+..+ ..+..+++|++|++++|.+... ++..+..++
T Consensus 205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~ 284 (362)
T 3goz_A 205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284 (362)
T ss_dssp TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred CCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence 6665542 2222322 3466666666666654332 2334456666666666653321 223445556
Q ss_pred CCCeeeCCCCcccc
Q 036593 527 SLESLDLSGNNFSG 540 (574)
Q Consensus 527 ~L~~L~l~~n~~~~ 540 (574)
+|+.|++++|++..
T Consensus 285 ~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 285 KIILVDKNGKEIHP 298 (362)
T ss_dssp EEEEECTTSCBCCG
T ss_pred ceEEEecCCCcCCC
Confidence 66666666666654
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.2e-22 Score=197.93 Aligned_cols=238 Identities=18% Similarity=0.199 Sum_probs=152.6
Q ss_pred CCCCccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCC--CCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcC
Q 036593 25 TTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNL--SFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKL 102 (574)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 102 (574)
.+..+.+|..+.+++ ..+++++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+
T Consensus 32 ~~~vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 32 VSGVCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp TTSSCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE
T ss_pred HHHHHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc
Confidence 346777888877654 45778888887765 2344555 7888888888887665544 45678888888888877
Q ss_pred ccC-CCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccc-cCcc-cCchhccCCCCCCEEEccCC-cCCcC-
Q 036593 103 SGS-IPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFN-VIDG-NIPSGIGNLSNLFDLDLRHN-NLQDQ- 177 (574)
Q Consensus 103 ~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~- 177 (574)
.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++ .++..+.++++|++|++++| .++..
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 654 6667778888888888888776556666677778888888777 4543 24555667777777777777 66543
Q ss_pred CCccccCCC-CCCEEEccCCc--cc-ccCchhhcccCCCcEEEcccCc-ccccCCchhhcCCCCcCeeeccccc-ceecC
Q 036593 178 IPTEIGNLQ-NLESLALGTNN--LS-GLIPPAIFNISTIRVLNLHSNQ-FSGRLPSTIGHSLPNIEYLTLAINN-LIGTI 251 (574)
Q Consensus 178 ~~~~l~~l~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~ 251 (574)
.+..+..++ +|++|++++|. +. ...+..+..+++|++|++++|. +++..+..+. .+++|+.|++++|. +....
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGG
T ss_pred HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHH
Confidence 344456667 77777777773 33 2334455566777777777766 4444444443 45666666666553 21111
Q ss_pred CcCccCCCCccEEeCCCC
Q 036593 252 PDSLTNASKLIGLDLGSN 269 (574)
Q Consensus 252 ~~~~~~~~~L~~L~l~~~ 269 (574)
...+..+++|++|++++|
T Consensus 265 ~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTS
T ss_pred HHHHhcCCCCCEEeccCc
Confidence 123444555555555555
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.5e-20 Score=173.30 Aligned_cols=203 Identities=17% Similarity=0.154 Sum_probs=148.3
Q ss_pred ccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCc-CccCCCccccCCCCCCEEEccC-CcccccCCcCC
Q 036593 57 TIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK-LSGSIPTWIGVLSKLQIMSLRN-NNITGPIPNSL 134 (574)
Q Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~ 134 (574)
.+|. +. ++|++|++++|.+.+..+..|.++++|++|++++|+ +....+.+|..+++|++|++++ |.+....+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 3555 33 378888888888876666678888888888888886 7766666788888888888887 77775556677
Q ss_pred CCCCCCceeecccccCcccCchhccCCCCCC---EEEccCC-cCCcCCCccccCCCCCC-EEEccCCcccccCchhhccc
Q 036593 135 FNLSKLEMLQASFNVIDGNIPSGIGNLSNLF---DLDLRHN-NLQDQIPTEIGNLQNLE-SLALGTNNLSGLIPPAIFNI 209 (574)
Q Consensus 135 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~l~~~ 209 (574)
.++++|++|++++|.+.+ +|. +..+++|+ +|++++| .+....+..|.++++|+ +|++++|.+....+..+..
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~- 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG- 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-
Confidence 788888888888888763 555 77777777 8888888 77766666788888888 8888888877544444444
Q ss_pred CCCcEEEcccCc-ccccCCchhhcCC-CCcCeeecccccceecCCcCccCCCCccEEeCCCC
Q 036593 210 STIRVLNLHSNQ-FSGRLPSTIGHSL-PNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSN 269 (574)
Q Consensus 210 ~~L~~L~l~~~~-~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 269 (574)
++|++|++++|. +. .++...+..+ ++|+.|++++|.+...... .+++|+.|++.++
T Consensus 179 ~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 778888888884 66 5554444467 7888888888877644332 5667888887765
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=4.6e-22 Score=195.35 Aligned_cols=267 Identities=17% Similarity=0.200 Sum_probs=163.0
Q ss_pred EEcCCCCCccccCCCccCCCCCcEEEccCCcccccCc----hhhcCCC-CCCEEEccCCcCccCCCccccCC-----CCC
Q 036593 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLP----NELGKLG-RLKFISFSFNKLSGSIPTWIGVL-----SKL 116 (574)
Q Consensus 47 l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L 116 (574)
++++.+.+++.+|..+...++|++|+|++|.+.+..+ ..+..++ +|++|++++|++.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677788887777766666678888888888876655 6778888 88888888888887766666654 888
Q ss_pred CEEEccCCcccccCCcC----CCCC-CCCceeecccccCcccCchhc----cC-CCCCCEEEccCCcCCcCCCcc----c
Q 036593 117 QIMSLRNNNITGPIPNS----LFNL-SKLEMLQASFNVIDGNIPSGI----GN-LSNLFDLDLRHNNLQDQIPTE----I 182 (574)
Q Consensus 117 ~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~~~~~~~~~----l 182 (574)
++|++++|.+.+..+.. +..+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.+....... +
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888888877544443 3333 678888888877765444333 33 357777777777776443332 3
Q ss_pred cCCC-CCCEEEccCCcccccCchhhc----cc-CCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCcc
Q 036593 183 GNLQ-NLESLALGTNNLSGLIPPAIF----NI-STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLT 256 (574)
Q Consensus 183 ~~l~-~L~~L~l~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 256 (574)
..++ +|++|++++|.+....+..+. .+ ++|++|++++|.+.+.....+. ..+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~---------------------~~l~ 221 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA---------------------YIFS 221 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH---------------------HHHH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH---------------------HHHh
Confidence 4444 777777777777655554333 23 4677777777666532211111 1121
Q ss_pred C-CCCccEEeCCCCceeecCC----CCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCC
Q 036593 257 N-ASKLIGLDLGSNSFSGHIP----NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGIL 331 (574)
Q Consensus 257 ~-~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 331 (574)
. .++|++|++++|.+....+ ..+..+++|+.|++++|.+....... ...+...+..+++|+.|++++|++.+..
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~-~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ-CKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH-HHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHH-HHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 2 2345555555555543222 23455666777777776644332110 1113334666777778888888776654
Q ss_pred Chhh
Q 036593 332 PPLI 335 (574)
Q Consensus 332 ~~~~ 335 (574)
+..+
T Consensus 301 ~~~~ 304 (362)
T 3goz_A 301 SIPI 304 (362)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 4433
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.1e-20 Score=180.79 Aligned_cols=194 Identities=21% Similarity=0.287 Sum_probs=97.1
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCC
Q 036593 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390 (574)
Q Consensus 311 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 390 (574)
...+++|++|+++++.+.... .+..+ ++++.|++++|.+....+ +..+++|++|++++|.+.+. ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~--~~~~l-~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE--GVQYL-NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCccCch--hhhcc-CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence 334566777777776665432 12221 244444444444442222 44445555555555544432 234444445
Q ss_pred CeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecC
Q 036593 391 QGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSL 470 (574)
Q Consensus 391 ~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~ 470 (574)
++|++++|++++ ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..
T Consensus 110 ~~L~l~~n~l~~-------------------~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 110 KTLDLTSTQITD-------------------VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp CEEECTTSCCCC-------------------CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred CEEECCCCCCCC-------------------ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh
Confidence 555444444431 11 14455566666666665543222 455555666666666554432
Q ss_pred CccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 471 PSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 471 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++.+.. .+..+++|+.|++++|++.
T Consensus 168 ~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 168 P--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred h--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 2 5555566666666665553322 455556666666666555332 2455555666666666554
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1e-20 Score=174.36 Aligned_cols=197 Identities=19% Similarity=0.208 Sum_probs=154.8
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCC-CcccCCcCccccCCCCeEeccC-CcccccCCCCCceEEccCCee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFND-LNGTIPTSVGTLQQLQGLSLED-NNLEGSIPYDLCHLELNGNKL 418 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~l~~~~l 418 (574)
+++.++++++.+....+..+..+++|++|++++|. ++...+..|.++++|++|++++ |+++.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~---------------- 95 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY---------------- 95 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE----------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE----------------
Confidence 55666666666665556677888889999998886 7777777888888888888887 77763
Q ss_pred eecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCC---eEeCCCC-cceecCCccccCCCCCC-EEeCCCCccccc
Q 036593 419 SGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYIL---EINLSSN-SLNDSLPSNVQKLKVLR-VLDLSRNQLSGN 493 (574)
Q Consensus 419 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~---~L~L~~~-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~ 493 (574)
..+..|..+++|++|++++|++++ .+. +..+++|+ +|++++| .+....+..|..+++|+ +|++++|++...
T Consensus 96 --i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 96 --IDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp --ECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred --cCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 334567788999999999998875 444 77888888 9999999 88877777788899999 999999998855
Q ss_pred CcccccCCCCCCEeeCCCCc-ccccCCccccCC-cCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCc
Q 036593 494 IPSTIGALVDLETLSLASNQ-FQGPIPESVGSL-ISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNM 561 (574)
Q Consensus 494 ~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~ 561 (574)
....+.. ++|++|++++|+ ++...+..|..+ ++|+.|++++|++.. +|.. .+++|+.|+++++.
T Consensus 172 ~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 172 QGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 5555655 889999999995 886667788888 899999999999884 3433 57789999988774
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.9e-20 Score=177.88 Aligned_cols=195 Identities=24% Similarity=0.345 Sum_probs=160.3
Q ss_pred ccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChh
Q 036593 255 LTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPL 334 (574)
Q Consensus 255 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 334 (574)
...+++|++|+++++.+... + .+..+++|+.|++++|.+.... . +..+++|++|++++|.+++.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~---------~-~~~l~~L~~L~L~~n~l~~~---- 100 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLA---------P-LKNLTKITELELSGNPLKNV---- 100 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG---------G-GTTCCSCCEEECCSCCCSCC----
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCCh---------h-HccCCCCCEEEccCCcCCCc----
Confidence 44677899999999988743 3 5788899999999998877642 1 67788888888888876632
Q ss_pred hhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEcc
Q 036593 335 IGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELN 414 (574)
Q Consensus 335 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~ 414 (574)
..+..+++|++|++++|.+++.. .+..+++|++|++++|++++
T Consensus 101 -----------------------~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~------------ 143 (308)
T 1h6u_A 101 -----------------------SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITN------------ 143 (308)
T ss_dssp -----------------------GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCC------------
T ss_pred -----------------------hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCc------------
Confidence 13678899999999999998643 48899999999999998873
Q ss_pred CCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccC
Q 036593 415 GNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNI 494 (574)
Q Consensus 415 ~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 494 (574)
++. +..+++|++|++++|++.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|++.+..
T Consensus 144 -------~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 144 -------ISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp -------CGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred -------Ccc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence 222 6788999999999999975433 8899999999999999976544 789999999999999998654
Q ss_pred cccccCCCCCCEeeCCCCcccc
Q 036593 495 PSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 495 ~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
.+..+++|+.|++++|+++.
T Consensus 212 --~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 212 --PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GGTTCTTCCEEEEEEEEEEC
T ss_pred --cccCCCCCCEEEccCCeeec
Confidence 38899999999999999984
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=2.7e-21 Score=188.40 Aligned_cols=224 Identities=22% Similarity=0.229 Sum_probs=118.9
Q ss_pred CCcEEEccCCcccccCchhhcCC--CCCCEEEccCCcCccCCCccccCCCCCCEEEccCCccccc-CCcCCCCCCCCcee
Q 036593 67 FLMSLDVTLNNFYGHLPNELGKL--GRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGP-IPNSLFNLSKLEML 143 (574)
Q Consensus 67 ~L~~L~L~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L 143 (574)
.++.++++++.+. +..+..+ +++++|+++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3566666666553 3444544 6666666666666544443 34566666666666655432 44445555666666
Q ss_pred ecccccCcccCchhccCCCCCCEEEccCC-cCCcC-CCccccCCCCCCEEEccCC-ccccc-CchhhcccC-CCcEEEcc
Q 036593 144 QASFNVIDGNIPSGIGNLSNLFDLDLRHN-NLQDQ-IPTEIGNLQNLESLALGTN-NLSGL-IPPAIFNIS-TIRVLNLH 218 (574)
Q Consensus 144 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~ 218 (574)
++++|.+.+..+..++++++|++|++++| .++.. .+..+..+++|++|++++| .+.+. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 66666555444555555566666666555 33321 2333444555555555555 44432 233344444 55555555
Q ss_pred cCcccccCCchhhcCCCCcCeeecccccce-ecCCcCccCCCCccEEeCCCCc-eeecCCCCccCCCcCceEEccCCc-c
Q 036593 219 SNQFSGRLPSTIGHSLPNIEYLTLAINNLI-GTIPDSLTNASKLIGLDLGSNS-FSGHIPNTFGNLRHLNVLSIRTNN-L 295 (574)
Q Consensus 219 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~ 295 (574)
+|.. .+. ...+..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +
T Consensus 204 ~~~~-----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 204 GYRK-----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp SCGG-----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred CCcc-----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 5421 121 1122233455666666666665 444445556666777777777764 2
Q ss_pred cccCCCCccccccccccCCCCCcEEEccCC
Q 036593 296 TTESSSADQWSFLSSLTNCRKLSYLVLDSN 325 (574)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 325 (574)
... ....+..+++|++|++++|
T Consensus 261 ~~~--------~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 261 IPE--------TLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGG--------GGGGGGGCTTCCEEECTTS
T ss_pred CHH--------HHHHHhcCCCCCEEeccCc
Confidence 211 1223566777777777776
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=178.17 Aligned_cols=183 Identities=16% Similarity=0.116 Sum_probs=106.3
Q ss_pred CCCcEEEccCCcccccC-ch--hhcCCCCCCEEEccCCcCccCCCccc--cCCCCCCEEEccCCcccccCC----cCCCC
Q 036593 66 SFLMSLDVTLNNFYGHL-PN--ELGKLGRLKFISFSFNKLSGSIPTWI--GVLSKLQIMSLRNNNITGPIP----NSLFN 136 (574)
Q Consensus 66 ~~L~~L~L~~~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~ 136 (574)
..++.+.+.++.+.... .. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45677777776654321 11 12234568888888887777777776 777888888888877764333 22345
Q ss_pred CCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcC----CCccccCCCCCCEEEccCCcccccCc--h-hhccc
Q 036593 137 LSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ----IPTEIGNLQNLESLALGTNNLSGLIP--P-AIFNI 209 (574)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~--~-~l~~~ 209 (574)
+++|++|++++|.+.+..+..++++++|++|++++|.+... ....+..+++|++|++++|.+..... . .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 67777777777777655556667777777777777765321 12223556667777777766642211 1 23455
Q ss_pred CCCcEEEcccCcccccCCchhhcC--CCCcCeeecccccce
Q 036593 210 STIRVLNLHSNQFSGRLPSTIGHS--LPNIEYLTLAINNLI 248 (574)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~ 248 (574)
++|++|++++|.+.+..|..+... +++|++|++++|.+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 666666666666654434433311 134444444444444
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=8.9e-22 Score=195.41 Aligned_cols=249 Identities=16% Similarity=0.183 Sum_probs=124.9
Q ss_pred cCCCccCCCCCcEEEccCCcccccC----chhhcCCCCCCEEEccCCcC---ccCCCccc-------cCCCCCCEEEccC
Q 036593 58 IPPHLGNLSFLMSLDVTLNNFYGHL----PNELGKLGRLKFISFSFNKL---SGSIPTWI-------GVLSKLQIMSLRN 123 (574)
Q Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~---~~~~~~~~-------~~l~~L~~L~l~~ 123 (574)
++..+..+++|++|+|++|.+.... +..+..+++|++|++++|.+ .+..|..+ .++++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 4555666777777777777765442 23356677777777776533 33334333 5667777777777
Q ss_pred Ccccc----cCCcCCCCCCCCceeecccccCcccCchh----ccCC---------CCCCEEEccCCcCCcC-CC---ccc
Q 036593 124 NNITG----PIPNSLFNLSKLEMLQASFNVIDGNIPSG----IGNL---------SNLFDLDLRHNNLQDQ-IP---TEI 182 (574)
Q Consensus 124 ~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l---------~~L~~L~l~~~~~~~~-~~---~~l 182 (574)
|.+.. .++..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.+... .+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 66653 23444555666666666666654222222 2222 5666666666655422 11 234
Q ss_pred cCCCCCCEEEccCCccccc-----CchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccC
Q 036593 183 GNLQNLESLALGTNNLSGL-----IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTN 257 (574)
Q Consensus 183 ~~l~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 257 (574)
..+++|++|++++|.+... .+..+..+++|+.|++++|.++.... ...+..+..
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~---------------------~~l~~~l~~ 242 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS---------------------SALAIALKS 242 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH---------------------HHHHHHGGG
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH---------------------HHHHHHHcc
Confidence 4555666666666555421 12244455555555555555431000 112223334
Q ss_pred CCCccEEeCCCCceeec----CCCCcc--CCCcCceEEccCCcccccCCCCccccccccc-cCCCCCcEEEccCCCCCCC
Q 036593 258 ASKLIGLDLGSNSFSGH----IPNTFG--NLRHLNVLSIRTNNLTTESSSADQWSFLSSL-TNCRKLSYLVLDSNPLGGI 330 (574)
Q Consensus 258 ~~~L~~L~l~~~~~~~~----~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~ 330 (574)
+++|++|++++|.+... .+..+. .+++|+.|++++|.+...+.. .++..+ ..+++|++|++++|++++.
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~----~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR----TLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH----HHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH----HHHHHHHhcCCCceEEEccCCcCCcc
Confidence 44455555555544332 222232 255555555555555431100 012223 3356666666666666554
Q ss_pred C
Q 036593 331 L 331 (574)
Q Consensus 331 ~ 331 (574)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.8e-19 Score=162.06 Aligned_cols=175 Identities=26% Similarity=0.228 Sum_probs=139.4
Q ss_pred cEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccC
Q 036593 367 ILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSI 446 (574)
Q Consensus 367 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 446 (574)
+.++++++.++... .. -.++|++|++++|+++ +..+..+..+++|++|++++|++.+..
T Consensus 10 ~~v~c~~~~l~~~p-~~--~~~~l~~L~l~~n~l~------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 10 TTVECYSQGRTSVP-TG--IPAQTTYLDLETNSLK------------------SLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp TEEECCSSCCSSCC-SC--CCTTCSEEECCSSCCC------------------CCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CEEEecCCCccCCC-CC--CCCCCcEEEcCCCccC------------------cCChhhhcccccCcEEECCCCccCccC
Confidence 46666666655332 11 1346666666666655 244456788899999999999998666
Q ss_pred CccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCc
Q 036593 447 PSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLI 526 (574)
Q Consensus 447 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 526 (574)
+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..++
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 67788899999999999999877777788899999999999999877777788899999999999999876666788899
Q ss_pred CCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCC
Q 036593 527 SLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVK 569 (574)
Q Consensus 527 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~ 569 (574)
+|+.|++++|++.. .+++|+.|+++.|+++|.+|..
T Consensus 149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeecc
Confidence 99999999998763 4678999999999999999864
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.1e-18 Score=157.09 Aligned_cols=175 Identities=24% Similarity=0.226 Sum_probs=142.9
Q ss_pred CCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCee
Q 036593 363 LRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKL 442 (574)
Q Consensus 363 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 442 (574)
.+++++|++++|.+++.....+..+++|++|++++|++++ ..+..+..+++|++|++++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS------------------LPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC------------------CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc------------------cChhhcCCCCCcCEEECCCCcC
Confidence 4588999999999887777778889999999999888773 2334567889999999999999
Q ss_pred cccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccc
Q 036593 443 TSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV 522 (574)
Q Consensus 443 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 522 (574)
.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------ 162 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------ 162 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------
Confidence 86666778889999999999999987777778889999999999999987766678889999999999998763
Q ss_pred cCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcccccc
Q 036593 523 GSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEI 566 (574)
Q Consensus 523 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~ 566 (574)
.+++|+.|+++.|++++.+|..++.++. ++..|...+..
T Consensus 163 -~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~ 201 (208)
T 2o6s_A 163 -TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKP 201 (208)
T ss_dssp -CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCB
T ss_pred -CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCc
Confidence 4568899999999999888888887765 55556554443
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.5e-18 Score=155.55 Aligned_cols=133 Identities=23% Similarity=0.321 Sum_probs=77.3
Q ss_pred CCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeC
Q 036593 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSL 509 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 509 (574)
++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..|.++++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45556666666555444445555556666666666655555555555666666666666655444444555566666666
Q ss_pred CCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcc
Q 036593 510 ASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNML 562 (574)
Q Consensus 510 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~ 562 (574)
++|++.+..+..|..+++|+.|++++|.+....+..|..+++|+.|++++|++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 66666555555555566666666666666554444555566666666666655
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=2.8e-18 Score=167.45 Aligned_cols=238 Identities=20% Similarity=0.137 Sum_probs=155.0
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccC-CCccccCCCCCCE-EEccC
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGS-IPTWIGVLSKLQI-MSLRN 123 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~-L~l~~ 123 (574)
++++++++++ .+|..+ .+++++|+|++|.+...-+.+|+++++|++|+|++|++.+. .+.+|.+++++++ +.+.+
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 5677778887 466655 36899999999998765566789999999999999987654 4457888888776 45556
Q ss_pred CcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccC-CcCCcCCCccccCCC-CCCEEEccCCccccc
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRH-NNLQDQIPTEIGNLQ-NLESLALGTNNLSGL 201 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 201 (574)
|.+....+..|..+++|++|++++|.+....+..+....++..+++.+ +.+.......|..+. .++.|++++|.+...
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 778766677888888999999988888755555566667777888755 456555555666653 577788888877754
Q ss_pred CchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccC
Q 036593 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281 (574)
Q Consensus 202 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 281 (574)
.+..+ ...+|+++++.++.....+|...+..+++|+.|++++|.++...... +.+|+.|.+.++.--...| .+..
T Consensus 170 ~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~ 244 (350)
T 4ay9_X 170 HNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEK 244 (350)
T ss_dssp CTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTT
T ss_pred Chhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cchh
Confidence 44333 44567777776543333666555556666666666666655433322 2334444433332222233 2445
Q ss_pred CCcCceEEcc
Q 036593 282 LRHLNVLSIR 291 (574)
Q Consensus 282 l~~L~~L~l~ 291 (574)
+++|+.+++.
T Consensus 245 l~~L~~l~l~ 254 (350)
T 4ay9_X 245 LVALMEASLT 254 (350)
T ss_dssp CCSCCEEECS
T ss_pred CcChhhCcCC
Confidence 5555555554
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=3.9e-18 Score=154.32 Aligned_cols=136 Identities=24% Similarity=0.253 Sum_probs=94.1
Q ss_pred CCCeEECCCCeecccCC-ccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeC
Q 036593 431 SLRELRLGSNKLTSSIP-SSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSL 509 (574)
Q Consensus 431 ~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 509 (574)
.+++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|.++++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 45677777777765533 44666777777777777776666666777777777777777776666666777777777777
Q ss_pred CCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcccccc
Q 036593 510 ASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEI 566 (574)
Q Consensus 510 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~ 566 (574)
++|++.+..+..|..+++|+.|++++|.+....|..|..+++|+.|++++|++....
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 777777666667777777777777777777666667777777777777777766443
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=4.8e-18 Score=165.82 Aligned_cols=238 Identities=18% Similarity=0.134 Sum_probs=177.3
Q ss_pred cEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCC-cCCCCCCCCce-eecc
Q 036593 69 MSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIP-NSLFNLSKLEM-LQAS 146 (574)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~ 146 (574)
++++.+++.++ .+|..+ .+++++|+|++|+++.+.+.+|+++++|++|++++|.+.+.++ .+|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67888888875 567655 3689999999999997777789999999999999999865444 56788888776 5556
Q ss_pred cccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccC-CcccccCchhhcccC-CCcEEEcccCcccc
Q 036593 147 FNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGT-NNLSGLIPPAIFNIS-TIRVLNLHSNQFSG 224 (574)
Q Consensus 147 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~ 224 (574)
.+.+....+..|.++++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 6788867778899999999999999998876666666777788888865 456655556666654 6888999999888
Q ss_pred cCCchhhcCCCCcCeeeccc-ccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCc-ccccCCCC
Q 036593 225 RLPSTIGHSLPNIEYLTLAI-NNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNN-LTTESSSA 302 (574)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~ 302 (574)
.++...+ ...+|+.+.+.+ +.+.......|..+++|++|++++|.++...+..+. +|+.|.+.++. +...
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~l---- 239 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKL---- 239 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCC----
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcC----
Confidence 6666655 456888888875 556655566788889999999999988855444444 45555544432 3222
Q ss_pred ccccccccccCCCCCcEEEccC
Q 036593 303 DQWSFLSSLTNCRKLSYLVLDS 324 (574)
Q Consensus 303 ~~~~~~~~l~~~~~L~~L~l~~ 324 (574)
..+..+++|+.+++++
T Consensus 240 ------P~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 240 ------PTLEKLVALMEASLTY 255 (350)
T ss_dssp ------CCTTTCCSCCEEECSC
T ss_pred ------CCchhCcChhhCcCCC
Confidence 2366778888888764
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.8e-18 Score=162.57 Aligned_cols=168 Identities=25% Similarity=0.380 Sum_probs=98.4
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG 420 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~ 420 (574)
+++.+++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|++++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~------------------ 104 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD------------------ 104 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC------------------
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC------------------
Confidence 556666666655432 2 24555666666666665554332 5555566666665555542
Q ss_pred cCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccC
Q 036593 421 HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA 500 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 500 (574)
+ ..+..+++|++|++++|++.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..
T Consensus 105 -~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~ 176 (291)
T 1h6t_A 105 -L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 176 (291)
T ss_dssp -G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred -C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcC
Confidence 1 1255666667777776666532 3455666666666666666544 445666666666666666664333 566
Q ss_pred CCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 501 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 501 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
+++|++|++++|.+++. + .+..+++|+.|++++|++..
T Consensus 177 l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 66666666666666632 2 35666666666666666653
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=7.4e-18 Score=153.61 Aligned_cols=136 Identities=28% Similarity=0.310 Sum_probs=95.2
Q ss_pred CCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeC
Q 036593 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSL 509 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 509 (574)
++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 66777777777777666666777777777777777776555556667777777777777777555556667777777777
Q ss_pred CCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcccccc
Q 036593 510 ASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEI 566 (574)
Q Consensus 510 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~ 566 (574)
++|++. .+|..+..+++|+.|++++|++....+..|..+++|+.|++++|++....
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 777777 56666677777777777777777555556677777777777777766543
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=4.1e-18 Score=166.98 Aligned_cols=176 Identities=26% Similarity=0.231 Sum_probs=138.1
Q ss_pred cEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCc-CCCCCCeEECCCCeeccc
Q 036593 367 ILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLA-SLTSLRELRLGSNKLTSS 445 (574)
Q Consensus 367 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~ 445 (574)
+.++++++.++.. +..+ .+.++.|++++|+++ +..+..+. .+++|+.|++++|++.+.
T Consensus 21 ~~l~c~~~~l~~i-P~~~--~~~l~~L~Ls~N~l~------------------~l~~~~~~~~l~~L~~L~L~~N~i~~i 79 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSL--PSYTALLDLSHNNLS------------------RLRAEWTPTRLTNLHSLLLSHNHLNFI 79 (361)
T ss_dssp TEEECCSSCCSSC-CSSC--CTTCSEEECCSSCCC------------------EECTTSSSSCCTTCCEEECCSSCCCEE
T ss_pred CEEEeCCCCcCcc-CccC--CCCCCEEECCCCCCC------------------ccChhhhhhcccccCEEECCCCcCCcc
Confidence 5677777766643 2222 234566666666555 34555666 889999999999999877
Q ss_pred CCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccc---
Q 036593 446 IPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV--- 522 (574)
Q Consensus 446 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l--- 522 (574)
.+.+|..+++|++|+|++|.+....+..|..+++|++|++++|.+....+..|.++++|+.|+|++|+++...+..|
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~ 159 (361)
T 2xot_A 80 SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--
T ss_pred ChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc
Confidence 77889999999999999999988877788999999999999999987778889999999999999999986544455
Q ss_pred cCCcCCCeeeCCCCcccccCCcCcccCCC--CCeEeccCCccc
Q 036593 523 GSLISLESLDLSGNNFSGKIPKSLEALSH--LKQFNVSQNMLE 563 (574)
Q Consensus 523 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~l~l~~n~~~ 563 (574)
..+++|+.|++++|++....+..+..++. ++.|++++|++.
T Consensus 160 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp --CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 56889999999999998665567888887 488999999875
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=2.1e-17 Score=150.60 Aligned_cols=163 Identities=20% Similarity=0.200 Sum_probs=135.5
Q ss_pred cccCCCCccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCc
Q 036593 22 LLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK 101 (574)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 101 (574)
.|..+...|.|.++.|. ++++. .+|..+. ++|++|+|++|.+.+..+..|..+++|++|++++|+
T Consensus 11 ~~~~~~~~Cs~~~v~c~------------~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCR------------SKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp CCCCTTCEEETTEEECT------------TSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEeCCEeEcc------------CCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence 35666777887776664 34454 4555443 799999999999988888899999999999999999
Q ss_pred CccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCcc
Q 036593 102 LSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTE 181 (574)
Q Consensus 102 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 181 (574)
+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+....+..
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 98777788899999999999999998666666888999999999999988 67888889999999999999888776677
Q ss_pred ccCCCCCCEEEccCCcccc
Q 036593 182 IGNLQNLESLALGTNNLSG 200 (574)
Q Consensus 182 l~~l~~L~~L~l~~~~~~~ 200 (574)
+..+++|+.|++++|++..
T Consensus 155 ~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTCTTCCEEECTTSCBCT
T ss_pred HhCCCCCCEEEeeCCCccC
Confidence 8888889999988888763
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=3.4e-18 Score=152.15 Aligned_cols=155 Identities=17% Similarity=0.280 Sum_probs=130.1
Q ss_pred ccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCC
Q 036593 384 VGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463 (574)
Q Consensus 384 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 463 (574)
...+++|++|++++|+++ .++ .+..+++|++|++++|.+. ....+..+++|++|++++
T Consensus 40 ~~~l~~L~~L~l~~n~i~-------------------~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~ 97 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-------------------DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMG 97 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-------------------CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEEC
T ss_pred hhhcCCccEEeccCCCcc-------------------ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeEC
Confidence 356778888888888776 344 4778899999999999764 345788899999999999
Q ss_pred CcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCc-ccccCCccccCCcCCCeeeCCCCcccccC
Q 036593 464 NSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQ-FQGPIPESVGSLISLESLDLSGNNFSGKI 542 (574)
Q Consensus 464 ~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 542 (574)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. ++ ..+ .+..+++|+.|++++|++...
T Consensus 98 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~- 174 (197)
T 4ezg_A 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY- 174 (197)
T ss_dssp TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-
T ss_pred CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-
Confidence 99988778889999999999999999997778889999999999999998 66 444 689999999999999999853
Q ss_pred CcCcccCCCCCeEeccCCcccc
Q 036593 543 PKSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 543 ~~~l~~l~~L~~l~l~~n~~~~ 564 (574)
+ .+..+++|+.|++++|+|.+
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp T-TGGGCSSCCEEEECBC----
T ss_pred H-HhccCCCCCEEEeeCcccCC
Confidence 3 78899999999999999865
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=2.6e-17 Score=168.74 Aligned_cols=107 Identities=26% Similarity=0.345 Sum_probs=52.3
Q ss_pred CCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCC----
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDL---- 504 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L---- 504 (574)
+++|+.|++++|.+++ ++. .+++|++|++++|.+.+ +|. +. ++|+.|++++|.++ .++. +.. +|
T Consensus 139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~ 206 (571)
T 3cvr_A 139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSE 206 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------
T ss_pred CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhccc
Confidence 4555555555555543 222 34555555555555544 232 33 55555555555555 2222 322 44
Q ss_pred ---CEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCccc
Q 036593 505 ---ETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEA 548 (574)
Q Consensus 505 ---~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~ 548 (574)
+.|++++|.++ .+|..+..+++|+.|++++|++....|..|..
T Consensus 207 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred ccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 55555555555 34444444555555555555555544444443
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3.4e-17 Score=148.09 Aligned_cols=152 Identities=24% Similarity=0.270 Sum_probs=125.9
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 124 (574)
+.+++++++++. +|..+. +++++|++++|.+.+..+..|..+++|++|++++|++.+..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 367888888874 565554 68999999999998777778999999999999999999888889999999999999999
Q ss_pred cccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCccc
Q 036593 125 NITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLS 199 (574)
Q Consensus 125 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 199 (574)
.+....+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 988555556788888888888888888777777888888888888888888776777788888888888887764
No 108
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.74 E-value=3.1e-16 Score=155.60 Aligned_cols=102 Identities=11% Similarity=0.144 Sum_probs=45.5
Q ss_pred cccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCC
Q 036593 449 SLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISL 528 (574)
Q Consensus 449 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 528 (574)
+|..+.+|+.+.+..+ +......+|..|++|+.++|..+ ++.+...+|.+|++|+.+.+..+ ++.....+|.+|++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3444444444444332 22333344445555555555422 33334445555555555555444 333444455555555
Q ss_pred CeeeCCCCcccccCCcCcccCCCCCeE
Q 036593 529 ESLDLSGNNFSGKIPKSLEALSHLKQF 555 (574)
Q Consensus 529 ~~L~l~~n~~~~~~~~~l~~l~~L~~l 555 (574)
+.+++..+ +. ....+|.++++|+.+
T Consensus 369 ~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEECCC-CE-EhhheecCCCCCcEE
Confidence 55555433 11 112344444544443
No 109
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.74 E-value=2.4e-16 Score=156.42 Aligned_cols=335 Identities=10% Similarity=0.026 Sum_probs=202.6
Q ss_pred ccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchh
Q 036593 126 ITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPA 205 (574)
Q Consensus 126 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 205 (574)
++.+...+|.++.+|+.+.+..+ ++.....+|.+|++|+.+++..+ +......+|.++++|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 45566777888888888888643 55455677888888888888764 55566677888888887766543 33344455
Q ss_pred hcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcC
Q 036593 206 IFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHL 285 (574)
Q Consensus 206 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 285 (574)
|..+..++........ .+....+..+++|+.+.+..+ .......+|..+++|+.+.+..+ ++......|.++..|
T Consensus 136 F~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eecccccccccCcccc---ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 5554433222221111 222223335555555555432 22233444555555555555443 222334445555555
Q ss_pred ceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCC
Q 036593 286 NVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRG 365 (574)
Q Consensus 286 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~ 365 (574)
+.+.+..+..... .....+..|+.+.+ ... ........+..+..
T Consensus 211 ~~i~~~~~~~~i~----------~~~~~~~~l~~i~i-------------------------p~~-~~~i~~~~f~~~~~ 254 (394)
T 4fs7_A 211 ENMEFPNSLYYLG----------DFALSKTGVKNIII-------------------------PDS-FTELGKSVFYGCTD 254 (394)
T ss_dssp CBCCCCTTCCEEC----------TTTTTTCCCCEEEE-------------------------CTT-CCEECSSTTTTCSS
T ss_pred ceeecCCCceEee----------hhhcccCCCceEEE-------------------------CCC-ceeccccccccccc
Confidence 5544433221110 00112233333333 221 11123345677788
Q ss_pred CcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeeccc
Q 036593 366 LILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS 445 (574)
Q Consensus 366 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 445 (574)
++.+.+..+.. .....+|..++.++.+......+ ....|..+.+|+.+.+..+ +...
T Consensus 255 l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---------------------~~~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 255 LESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---------------------PEKTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp CCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---------------------CTTTTTTCTTCCEEEECTT-CCEE
T ss_pred ceeEEcCCCcc-eeeccccccccccceeccCceee---------------------ccccccccccccccccccc-ccee
Confidence 88888776533 35566677777777776654332 2246778889999988765 5545
Q ss_pred CCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCC
Q 036593 446 IPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL 525 (574)
Q Consensus 446 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~ 525 (574)
...+|..|.+|+.+++..+ +......+|.+|++|+.+++..+ +..+...+|.+|++|+.+++..+ +. ....+|..+
T Consensus 312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c 387 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDT 387 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTT
T ss_pred chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCC
Confidence 6778888999999999754 55666778889999999999766 66677788999999999998755 22 234678888
Q ss_pred cCCCee
Q 036593 526 ISLESL 531 (574)
Q Consensus 526 ~~L~~L 531 (574)
++|+.+
T Consensus 388 ~~L~~I 393 (394)
T 4fs7_A 388 TKFKWI 393 (394)
T ss_dssp CEEEEE
T ss_pred CCCcEE
Confidence 888765
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.5e-17 Score=157.47 Aligned_cols=173 Identities=27% Similarity=0.402 Sum_probs=130.4
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCC
Q 036593 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390 (574)
Q Consensus 311 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 390 (574)
+..+++|+.|+++++.+..... +..+ ++++.|++++|.+....+ +..+++|++|++++|.+++. ..+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG--IQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTC
T ss_pred hhhcCcccEEEccCCCcccChh--HhcC-CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCC
Confidence 4567788888888888776532 3333 488888888888875433 77888888888888887753 347778888
Q ss_pred CeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecC
Q 036593 391 QGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSL 470 (574)
Q Consensus 391 ~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~ 470 (574)
++|++++|++++ + ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+.+..
T Consensus 115 ~~L~L~~n~i~~-------------------~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 115 KSLSLEHNGISD-------------------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp CEEECTTSCCCC-------------------C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CEEECCCCcCCC-------------------C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 888888887763 1 2466778888888888888744 56778888888888888887654
Q ss_pred CccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccc
Q 036593 471 PSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 471 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
+ +..+++|+.|++++|.+.+. + .+..+++|+.|++++|++..
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred h--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 4 77888888888888888753 2 47788888888888888875
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=2.3e-17 Score=169.11 Aligned_cols=206 Identities=24% Similarity=0.330 Sum_probs=154.4
Q ss_pred HhcccccCCCCcc-----ceeee-eecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCC
Q 036593 18 MLLYLLKTTNMRL-----SWVGI-SCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGR 91 (574)
Q Consensus 18 ~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 91 (574)
..+..|.....+| .|.++ .|.. .++++|+++++.+++ +|..+ +++|++|+|++|.+. .+| ..+++
T Consensus 31 ~~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~ 101 (571)
T 3cvr_A 31 SAWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPAS 101 (571)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTT
T ss_pred HHHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCC
Confidence 3455677666666 68887 6753 579999999999986 66655 378999999999987 566 56799
Q ss_pred CCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccC
Q 036593 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRH 171 (574)
Q Consensus 92 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 171 (574)
|++|++++|++++ +|. +.. +|++|++++|.+.+ +|. .+++|++|++++|.+++ +|. .+++|++|++++
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence 9999999999986 666 655 99999999999884 555 67899999999999874 554 578899999999
Q ss_pred CcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCC-------cEEEcccCcccccCCchhhcCCCCcCeeeccc
Q 036593 172 NNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTI-------RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAI 244 (574)
Q Consensus 172 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 244 (574)
|.++. .+. +. ++|+.|++++|.+. .+|. +.. +| +.|++++|.+. .+|..++ .+++|+.|++++
T Consensus 170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~~ 239 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILED 239 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECCS
T ss_pred CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEeeC
Confidence 98876 444 55 88899999988887 4444 443 55 77888887777 6676666 377777777777
Q ss_pred ccceecCCcC
Q 036593 245 NNLIGTIPDS 254 (574)
Q Consensus 245 ~~~~~~~~~~ 254 (574)
|.+....+..
T Consensus 240 N~l~~~~p~~ 249 (571)
T 3cvr_A 240 NPLSSRIRES 249 (571)
T ss_dssp SSCCHHHHHH
T ss_pred CcCCCcCHHH
Confidence 7665544433
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=4e-17 Score=169.35 Aligned_cols=169 Identities=25% Similarity=0.394 Sum_probs=129.1
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG 420 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~ 420 (574)
.|+.|.+.+|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|++|+|++|++++
T Consensus 44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~------------------ 101 (605)
T 1m9s_A 44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD------------------ 101 (605)
T ss_dssp TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC------------------
T ss_pred CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC------------------
Confidence 67777777777663 23 46777788888888777765443 6777777777777777662
Q ss_pred cCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccC
Q 036593 421 HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA 500 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 500 (574)
++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..+ +..
T Consensus 102 -l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~ 173 (605)
T 1m9s_A 102 -LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 173 (605)
T ss_dssp -CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred -Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc
Confidence 22 567788899999999988742 4577888899999999888765 567888899999999988886544 788
Q ss_pred CCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccccc
Q 036593 501 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGK 541 (574)
Q Consensus 501 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 541 (574)
+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++...
T Consensus 174 l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 88999999999988853 4578888899999999888754
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=1.2e-16 Score=144.59 Aligned_cols=151 Identities=23% Similarity=0.230 Sum_probs=118.9
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCc-hhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLP-NELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 124 (574)
+++++++.++. +|..+. +.+++|++++|.+.+..+ ..|..+++|++|++++|++.+..+.+|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 78888888874 565553 467899999998876644 45888899999999999888777778888888888888888
Q ss_pred cccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCccc
Q 036593 125 NITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLS 199 (574)
Q Consensus 125 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 199 (574)
.+....+..|..+++|++|++++|.+.+..|..+.++++|++|++++|.+....+..|..+++|++|++++|++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 888666666778888888888888887666777777888888888888777766777777777777777777665
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=6.2e-17 Score=158.53 Aligned_cols=176 Identities=23% Similarity=0.202 Sum_probs=147.6
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhc-CCCCCCEEEccCCcCccCCCccccCCCCCCEEEccC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELG-KLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRN 123 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 123 (574)
+++++++++++. +|..+. +.+++|+|++|.+.+..+..|. .+++|++|++++|++.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 378999998884 666554 4689999999999877777787 899999999999999988888999999999999999
Q ss_pred CcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccc---cCCCCCCEEEccCCcccc
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEI---GNLQNLESLALGTNNLSG 200 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~ 200 (574)
|.+....+..|..+++|++|++++|.+....+..|.++++|++|++++|.+.......+ ..+++|+.|++++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99987777778999999999999999987778889999999999999999886655555 568899999999998887
Q ss_pred cCchhhcccCC--CcEEEcccCccc
Q 036593 201 LIPPAIFNIST--IRVLNLHSNQFS 223 (574)
Q Consensus 201 ~~~~~l~~~~~--L~~L~l~~~~~~ 223 (574)
..+..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 66667777766 477888888765
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.3e-17 Score=155.35 Aligned_cols=168 Identities=23% Similarity=0.328 Sum_probs=119.3
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG 420 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~ 420 (574)
++..+.+.++.+.... .+..+++|+.|++++|.++... .+..+++|++|++++|++++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~------------------ 77 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISD------------------ 77 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC------------------
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCC------------------
Confidence 4555566666665332 3567778888888888776432 56777778888877777762
Q ss_pred cCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccC
Q 036593 421 HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA 500 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 500 (574)
++. +..+++|++|++++|++.+. +.. .. ++|++|++++|.+.+. ..+..+++|+.|++++|++.+. ..+..
T Consensus 78 -~~~-l~~l~~L~~L~L~~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~ 148 (263)
T 1xeu_A 78 -LSP-LKDLTKLEELSVNRNRLKNL-NGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGF 148 (263)
T ss_dssp -CGG-GTTCSSCCEEECCSSCCSCC-TTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGG
T ss_pred -Chh-hccCCCCCEEECCCCccCCc-Ccc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHcc
Confidence 223 67788888888888888643 222 22 7888888888888654 3477788888888888888754 25777
Q ss_pred CCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccccc
Q 036593 501 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGK 541 (574)
Q Consensus 501 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 541 (574)
+++|++|++++|++.+. ..+..+++|+.|++++|++...
T Consensus 149 l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 149 LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 88888888888888755 5677788888888888887743
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.3e-17 Score=145.70 Aligned_cols=154 Identities=18% Similarity=0.304 Sum_probs=122.9
Q ss_pred cCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCC
Q 036593 361 GNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSN 440 (574)
Q Consensus 361 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 440 (574)
..+++|++|++++|.+... + .+..+++|++|++++|.++ .. ..+..+++|++|++++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~-------------------~~-~~l~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHAT-------------------NY-NPISGLSNLERLRIMGK 98 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCS-------------------CC-GGGTTCTTCCEEEEECT
T ss_pred hhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCC-------------------cc-hhhhcCCCCCEEEeECC
Confidence 5677888899988888743 3 5788888999988888665 22 35677889999999999
Q ss_pred eecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCc-ccccCcccccCCCCCCEeeCCCCcccccCC
Q 036593 441 KLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQ-LSGNIPSTIGALVDLETLSLASNQFQGPIP 519 (574)
Q Consensus 441 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 519 (574)
++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +.. .+ .+.++++|++|++++|.+.+ .+
T Consensus 99 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~ 175 (197)
T 4ezg_A 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR 175 (197)
T ss_dssp TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT
T ss_pred ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH
Confidence 9887677888889999999999999887777778889999999999998 653 33 68889999999999999885 33
Q ss_pred ccccCCcCCCeeeCCCCcccc
Q 036593 520 ESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 520 ~~l~~~~~L~~L~l~~n~~~~ 540 (574)
.+..+++|+.|++++|++..
T Consensus 176 -~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -TGGGCSSCCEEEECBC----
T ss_pred -HhccCCCCCEEEeeCcccCC
Confidence 77888999999999998763
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=1.3e-16 Score=165.44 Aligned_cols=186 Identities=26% Similarity=0.368 Sum_probs=149.0
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCC
Q 036593 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390 (574)
Q Consensus 311 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 390 (574)
+..++.|+.|+++++.+.... .+..+ ++|+.|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGC-TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccC-CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCC
Confidence 556788999999999887764 24443 499999999999886444 88999999999999998753 368889999
Q ss_pred CeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecC
Q 036593 391 QGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSL 470 (574)
Q Consensus 391 ~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~ 470 (574)
++|++++|++.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..
T Consensus 112 ~~L~Ls~N~l~~-------------------l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 112 KSLSLEHNGISD-------------------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp CEEECTTSCCCC-------------------C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CEEEecCCCCCC-------------------C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 999999998873 2 2467889999999999999754 67888999999999999998765
Q ss_pred CccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCC
Q 036593 471 PSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLE 529 (574)
Q Consensus 471 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 529 (574)
+ +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.......+..+..+.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~ 224 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEEC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEecc
Confidence 5 88899999999999999854 4588899999999999999864333344433333
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=3.6e-17 Score=158.21 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=63.2
Q ss_pred CCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCC-EeeCCCCcccccCCccccCCcCCCee
Q 036593 453 LEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLE-TLSLASNQFQGPIPESVGSLISLESL 531 (574)
Q Consensus 453 ~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~l~~~~~L~~L 531 (574)
+++|+++++++|.+......+|..|++|+++++.+| +..+...+|.+|++|+ .+++.+ .++...+.+|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 456666666666555555556666666666666655 5445555666666666 666666 5554555666666666666
Q ss_pred eCCCCcccccCCcCcccCCCCCeEe
Q 036593 532 DLSGNNFSGKIPKSLEALSHLKQFN 556 (574)
Q Consensus 532 ~l~~n~~~~~~~~~l~~l~~L~~l~ 556 (574)
++++|.+..+.+..|..+++|++|+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 6666666655556666666666665
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=2.1e-15 Score=148.72 Aligned_cols=263 Identities=11% Similarity=0.134 Sum_probs=128.9
Q ss_pred CCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCC
Q 036593 235 PNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNC 314 (574)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 314 (574)
..++.+.+.. .+......+|..+ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+..++... |.+|
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a--------F~~c 179 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDI--------FYYC 179 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSST--------TTTC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHH--------hhCc
Confidence 3444444432 2333344445543 4666665544 444455555553 466666654 333333222 5666
Q ss_pred CCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEe
Q 036593 315 RKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLS 394 (574)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 394 (574)
++|+.+++.++.++.+.... |. +.+|+.+.+..+ +......+|.+|++|+.+.
T Consensus 180 ~~L~~l~l~~n~l~~I~~~a-------------------------F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPAST-------------------------FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp TTCCEEECTTSCCSEECTTT-------------------------TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred ccCCeeecCCCcceEechhh-------------------------Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 66666666655554332222 22 244444544422 3334444555555555555
Q ss_pred ccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcce-----ec
Q 036593 395 LEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN-----DS 469 (574)
Q Consensus 395 l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~~ 469 (574)
+..+ ++ .....+|.+ .+|+.+.+. +.++.....+|..|++|+.+.+.++.+. ..
T Consensus 233 l~~~-l~------------------~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 233 IPEN-VS------------------TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp CCTT-CC------------------EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred cCCC-cc------------------Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence 4432 11 022233333 345555552 2233334445555555555555444332 33
Q ss_pred CCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccC
Q 036593 470 LPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEAL 549 (574)
Q Consensus 470 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l 549 (574)
...+|.+|++|+.+++.. .+..+...+|.+|++|+.+.|..+ ++.....+|.++ +|+.+++.+|.........|..+
T Consensus 292 ~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred CHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 445556666666666652 344445556666666666666443 444455566666 66666666665554444555555
Q ss_pred C-CCCeEeccCCc
Q 036593 550 S-HLKQFNVSQNM 561 (574)
Q Consensus 550 ~-~L~~l~l~~n~ 561 (574)
+ +++.|++..+.
T Consensus 369 ~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 369 PDDITVIRVPAES 381 (401)
T ss_dssp CTTCCEEEECGGG
T ss_pred CCCccEEEeCHHH
Confidence 3 55666655443
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=2.7e-17 Score=159.12 Aligned_cols=286 Identities=14% Similarity=0.083 Sum_probs=184.7
Q ss_pred CCCCCcEEEccCCcccccCchhhcC-CCCCCEEEccCCcCc--cCCCccccCCCCCCEEEccCCcccccCCcCCCC----
Q 036593 64 NLSFLMSLDVTLNNFYGHLPNELGK-LGRLKFISFSFNKLS--GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN---- 136 (574)
Q Consensus 64 ~~~~L~~L~L~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---- 136 (574)
.++++++|.++++-. ......+.. +++|++|||++|++. ...... ++.++.+.+..+. +.+.+|.+
T Consensus 23 ~~~~l~~L~l~g~i~-~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I~~~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTGKLN-AEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---VPAYAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEEEEC-HHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---ECTTTTEEEETT
T ss_pred hhCceeEEEEecccc-HHHHHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccc---cCHHHhcccccc
Confidence 356788888886422 122223444 788999999988876 222222 2234555555553 34556777
Q ss_pred ----CCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCc----ccccCchhhcc
Q 036593 137 ----LSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNN----LSGLIPPAIFN 208 (574)
Q Consensus 137 ----l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~----~~~~~~~~l~~ 208 (574)
+++|+.|++.. .+......+|.+|++|++|++..+.+....+.+|.++.++..+...... .......+|..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 88888888888 6766666778888889999988888877778888887777777665532 12233445666
Q ss_pred cCCCc-EEEcccCcccccCCchhhc---CCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCc
Q 036593 209 ISTIR-VLNLHSNQFSGRLPSTIGH---SLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRH 284 (574)
Q Consensus 209 ~~~L~-~L~l~~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 284 (574)
+..|+ .+.+.... .++..++. ...+++.+.+.+.-...........+++|+++++.+|.++......|.++++
T Consensus 175 ~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 175 GEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp SCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred ccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 66666 44443322 22222221 1334455544432111110011113678888888888887777778888888
Q ss_pred CceEEccCCcccccCCCCccccccccccCCCCCc-EEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCC
Q 036593 285 LNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLS-YLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNL 363 (574)
Q Consensus 285 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l 363 (574)
|+.+++..+ +..++... |.+|++|+ .+++.+ .++ ...+.+|.+|
T Consensus 252 L~~l~l~~n-i~~I~~~a--------F~~~~~L~~~l~l~~-~l~-------------------------~I~~~aF~~c 296 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRV--------FSNCGRLAGTLELPA-SVT-------------------------AIEFGAFMGC 296 (329)
T ss_dssp CCEEECCTT-CCEECTTT--------TTTCTTCCEEEEECT-TCC-------------------------EECTTTTTTC
T ss_pred CCEEECCcc-cceehHHH--------hhCChhccEEEEEcc-cce-------------------------EEchhhhhCC
Confidence 888888776 66555444 77788887 888765 333 2344668889
Q ss_pred CCCcEEECcCCCCcccCCcCccccCCCCeEec
Q 036593 364 RGLILLTLDFNDLNGTIPTSVGTLQQLQGLSL 395 (574)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 395 (574)
++|+.++++.+.+......+|.++++|++++.
T Consensus 297 ~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 297 DNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999888888888889999999998864
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=5.1e-15 Score=145.94 Aligned_cols=250 Identities=13% Similarity=0.073 Sum_probs=169.0
Q ss_pred cCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCce
Q 036593 63 GNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEM 142 (574)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 142 (574)
..+..++.+.+.. .+...-..+|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+..+...+|.+|++|+.
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3446777777764 3444445677775 6888887654 665667777774 688888876 455566677888888888
Q ss_pred eecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcc
Q 036593 143 LQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222 (574)
Q Consensus 143 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 222 (574)
+++..+.+......+|. +.+|+.+.+..+ +..+...+|.++++|+.+.+..+ +......+|.+ .+|+.+.+.. .+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence 88887777644445555 578888888754 66667777888888888888764 55555666666 6788888743 34
Q ss_pred cccCCchhhcCCCCcCeeecccccce-----ecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccc
Q 036593 223 SGRLPSTIGHSLPNIEYLTLAINNLI-----GTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTT 297 (574)
Q Consensus 223 ~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 297 (574)
. .++...+..+++|+.+.+.++... .....+|.++++|+.+.+.+ .+......+|.++++|+.+.+..+ ++.
T Consensus 260 ~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 260 T-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp C-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred c-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 4 455555557788888877766543 45566777888888888874 466566777778888888887544 444
Q ss_pred cCCCCccccccccccCCCCCcEEEccCCCCCCCCChh
Q 036593 298 ESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPL 334 (574)
Q Consensus 298 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 334 (574)
++... |.+| +|+.+++.++.........
T Consensus 337 I~~~a--------F~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 337 INFSA--------FNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp ECTTS--------SSSS-CCCEEEECCSSCCBCCCSS
T ss_pred EcHHh--------CCCC-CCCEEEEcCCCCccccccc
Confidence 43333 7777 7888888777665444333
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.4e-16 Score=148.29 Aligned_cols=170 Identities=20% Similarity=0.297 Sum_probs=133.0
Q ss_pred CCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeE
Q 036593 314 CRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGL 393 (574)
Q Consensus 314 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 393 (574)
+..+..++++++.+++.. .+..+ ++++.|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 445666777777777654 23333 389999999998874 44 57888999999999999886554 8888999999
Q ss_pred eccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCcc
Q 036593 394 SLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSN 473 (574)
Q Consensus 394 ~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 473 (574)
++++|++++ ++. +.. ++|+.|++++|++++. ..+..+++|++|++++|.+.+. ..
T Consensus 91 ~L~~N~l~~-------------------l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~ 145 (263)
T 1xeu_A 91 SVNRNRLKN-------------------LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VM 145 (263)
T ss_dssp ECCSSCCSC-------------------CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GG
T ss_pred ECCCCccCC-------------------cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hH
Confidence 999998873 222 222 8899999999998753 3578889999999999998765 35
Q ss_pred ccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccccc
Q 036593 474 VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGP 517 (574)
Q Consensus 474 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 517 (574)
+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 146 l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 78899999999999999865 5688899999999999988854
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1e-15 Score=135.19 Aligned_cols=129 Identities=26% Similarity=0.335 Sum_probs=83.3
Q ss_pred ceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCc-cccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCC
Q 036593 409 CHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPS-SLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSR 487 (574)
Q Consensus 409 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~ 487 (574)
+.+++++++++ .+|..+. ++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666665 4444332 2677777777766644443 366666777777777776666666666667777777777
Q ss_pred CcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 488 NQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 488 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
|++.+..+..|.++++|++|++++|++++..|..+..+++|+.|++++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 76666555566666677777777776666666666666667777777666653
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=2.3e-16 Score=136.41 Aligned_cols=131 Identities=24% Similarity=0.257 Sum_probs=69.5
Q ss_pred CCCCeEECCCCeec-ccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEee
Q 036593 430 TSLRELRLGSNKLT-SSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLS 508 (574)
Q Consensus 430 ~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 508 (574)
++|++|++++|.+. +.++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 33444444555555555555555433 3445555555555555555544444444455666666
Q ss_pred CCCCcccccC-CccccCCcCCCeeeCCCCcccccCC---cCcccCCCCCeEeccCCcc
Q 036593 509 LASNQFQGPI-PESVGSLISLESLDLSGNNFSGKIP---KSLEALSHLKQFNVSQNML 562 (574)
Q Consensus 509 l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~l~l~~n~~ 562 (574)
+++|.+++.. +..+..+++|+.|++++|++....+ ..+..+++|+.|++++|++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 6666555321 1445555666666666666553322 2455566666666666654
No 125
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.63 E-value=6.6e-14 Score=138.84 Aligned_cols=90 Identities=9% Similarity=0.064 Sum_probs=47.8
Q ss_pred cccCCcCCCCCC-CCceeecccccCcccCchhccCCCCCCEEEccCCc---CCcCCCccccCCCCCCEEEccCCcccccC
Q 036593 127 TGPIPNSLFNLS-KLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNN---LQDQIPTEIGNLQNLESLALGTNNLSGLI 202 (574)
Q Consensus 127 ~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 202 (574)
+.+...+|.++. .|+.+.+..+ ++.....+|.+|++|+.+.+..+. +..+...+|.++.+|+.+.+..+ +....
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 334455566653 4666666543 333455566666666666665432 44444555666666665555432 33344
Q ss_pred chhhcccCCCcEEEcc
Q 036593 203 PPAIFNISTIRVLNLH 218 (574)
Q Consensus 203 ~~~l~~~~~L~~L~l~ 218 (574)
..+|..+.+|+.+.+.
T Consensus 130 ~~aF~~c~~L~~i~lp 145 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIP 145 (394)
T ss_dssp TTTTTTCTTCCEEECC
T ss_pred hhhhhhhccccccccc
Confidence 4445555555555553
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=8.8e-16 Score=129.78 Aligned_cols=129 Identities=22% Similarity=0.269 Sum_probs=102.5
Q ss_pred CCCCCeEECCCCeec-ccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEe
Q 036593 429 LTSLRELRLGSNKLT-SSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETL 507 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 507 (574)
.++|+.|++++|.+. +..+..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888888887 56677777888888888888888765 667788888888888888886567777778889999
Q ss_pred eCCCCccccc-CCccccCCcCCCeeeCCCCcccccCC---cCcccCCCCCeEeccC
Q 036593 508 SLASNQFQGP-IPESVGSLISLESLDLSGNNFSGKIP---KSLEALSHLKQFNVSQ 559 (574)
Q Consensus 508 ~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~l~l~~ 559 (574)
++++|.+++. .+..+..+++|+.|++++|++....+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999888853 33678888889999999998886544 4678888999888764
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=6.8e-16 Score=133.44 Aligned_cols=141 Identities=26% Similarity=0.194 Sum_probs=123.0
Q ss_pred CcccccCCCCCceEEccCCeee-ecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccC
Q 036593 398 NNLEGSIPYDLCHLELNGNKLS-GHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQK 476 (574)
Q Consensus 398 ~~~~~~~~~~l~~l~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~ 476 (574)
+.+....|..++.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..
T Consensus 16 ~~~~~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 16 LELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp HHHTTSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred hhhccCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 3445567789999999999998 67788889999999999999999855 78889999999999999998877777778
Q ss_pred CCCCCEEeCCCCcccccC-cccccCCCCCCEeeCCCCcccccCC---ccccCCcCCCeeeCCCCcccc
Q 036593 477 LKVLRVLDLSRNQLSGNI-PSTIGALVDLETLSLASNQFQGPIP---ESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 477 l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~~~~ 540 (574)
+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+..
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999999999998643 2678999999999999999996544 478999999999999999873
No 128
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.62 E-value=1.8e-13 Score=135.74 Aligned_cols=136 Identities=13% Similarity=0.193 Sum_probs=89.1
Q ss_pred cCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccC
Q 036593 421 HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA 500 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 500 (574)
....+|..|..|+.+.+..+-. .....+|..+.+|+.+.+.. .+......+|.+|.+|+.++|..+ ++.+...+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 4456777888888888866543 25566777888888888853 444556677888888888888653 55566678888
Q ss_pred CCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccc
Q 036593 501 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563 (574)
Q Consensus 501 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~ 563 (574)
|.+|+.+.|..+ ++.....+|.+|++|+.+++.++.... ..+....+|+.+.+..+.+.
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 888888888654 555566788888888888888876442 35666778888887766543
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=4.9e-18 Score=175.18 Aligned_cols=163 Identities=25% Similarity=0.304 Sum_probs=109.9
Q ss_pred cCCcCccccCCCCeEe-ccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCC
Q 036593 379 TIPTSVGTLQQLQGLS-LEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYIL 457 (574)
Q Consensus 379 ~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 457 (574)
..+..++.+++|+.|+ ++.+.+. .+..+.+++|.++.. + ...|+.|++++|.+++ +|. +..+++|+
T Consensus 400 ~~~~~l~~l~~L~~L~~l~~n~~~-----~L~~l~l~~n~i~~l-~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~ 466 (567)
T 1dce_A 400 YEKETLQYFSTLKAVDPMRAAYLD-----DLRSKFLLENSVLKM-E-----YADVRVLHLAHKDLTV-LCH-LEQLLLVT 466 (567)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHHHHHHHHHHH-H-----HTTCSEEECTTSCCSS-CCC-GGGGTTCC
T ss_pred CCHHHHHHHHhcccCcchhhcccc-----hhhhhhhhccccccc-C-----ccCceEEEecCCCCCC-CcC-ccccccCc
Confidence 3444556666666666 4544432 122333334444321 1 1247888888888874 454 77788888
Q ss_pred eEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccC-CccccCCcCCCeeeCCCC
Q 036593 458 EINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI-PESVGSLISLESLDLSGN 536 (574)
Q Consensus 458 ~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n 536 (574)
+|++++|.+. .+|..+..+++|+.|++++|.+++ ++ .++++++|++|++++|.+++.. |..+..+++|+.|++++|
T Consensus 467 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred EeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 8888888887 566777888888888888888875 44 6778888888888888888665 788888888888888888
Q ss_pred cccccCCcC---cccCCCCCeEec
Q 036593 537 NFSGKIPKS---LEALSHLKQFNV 557 (574)
Q Consensus 537 ~~~~~~~~~---l~~l~~L~~l~l 557 (574)
++....+.. +..+|+|+.|++
T Consensus 544 ~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 544 SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCccHHHHHHHHCcccCccCC
Confidence 887544322 334778887764
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=8.3e-15 Score=127.73 Aligned_cols=128 Identities=26% Similarity=0.308 Sum_probs=65.0
Q ss_pred ceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCC
Q 036593 409 CHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRN 488 (574)
Q Consensus 409 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n 488 (574)
+.+++++++++ .+|..+ .++|++|++++|++.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 34555555554 223222 245555555555555444444555555555555555555444444455555555555555
Q ss_pred cccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 489 QLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 489 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 555444444455555555555555555433333455555555555555554
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=8.9e-15 Score=129.16 Aligned_cols=155 Identities=26% Similarity=0.315 Sum_probs=115.6
Q ss_pred CeEeccCCcccc---cCCCCCceEEccCCeeeecCCc-cCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcc
Q 036593 391 QGLSLEDNNLEG---SIPYDLCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSL 466 (574)
Q Consensus 391 ~~L~l~~~~~~~---~~~~~l~~l~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l 466 (574)
+++++++++++. .++..++.|++++|.+++..+. .+..+++|++|++++|++++..+.++..+++|++|++++|.+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 556666666542 3445788999999998865554 478899999999999999877788888999999999999999
Q ss_pred eecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCcc-ccCCcCCCeeeCCCCcccccCCcC
Q 036593 467 NDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPES-VGSLISLESLDLSGNNFSGKIPKS 545 (574)
Q Consensus 467 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~ 545 (574)
.+..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+.. +. ..++...+.++......|..
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~~ 168 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSK 168 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTT
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCChH
Confidence 8888888888999999999999998887888888999999999999888543211 11 12333344455544445544
Q ss_pred cc
Q 036593 546 LE 547 (574)
Q Consensus 546 l~ 547 (574)
+.
T Consensus 169 l~ 170 (192)
T 1w8a_A 169 VR 170 (192)
T ss_dssp TT
T ss_pred Hc
Confidence 43
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.6e-15 Score=126.91 Aligned_cols=126 Identities=22% Similarity=0.204 Sum_probs=103.8
Q ss_pred CceEEccCCeee-ecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCC
Q 036593 408 LCHLELNGNKLS-GHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLS 486 (574)
Q Consensus 408 l~~l~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~ 486 (574)
++.+++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 334444444443 35666778899999999999999855 778899999999999999987777777789999999999
Q ss_pred CCccccc-CcccccCCCCCCEeeCCCCcccccCC---ccccCCcCCCeeeCCC
Q 036593 487 RNQLSGN-IPSTIGALVDLETLSLASNQFQGPIP---ESVGSLISLESLDLSG 535 (574)
Q Consensus 487 ~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~ 535 (574)
+|.+.+. .+..+.++++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999864 33778999999999999999996655 4789999999999864
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1.1e-17 Score=172.53 Aligned_cols=217 Identities=19% Similarity=0.157 Sum_probs=152.0
Q ss_pred cCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCcc
Q 036593 280 GNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKE 359 (574)
Q Consensus 280 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 359 (574)
..++.|+.|++++|.+.. ++..++.+++|+.|+++++.. ....+..+ ..+......|..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~---------Lp~~i~~l~~L~~L~l~~n~~-------l~~l~~ll-----~~~~~~~~~~~~ 404 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV---------LQSELESCKELQELEPENKWC-------LLTIILLM-----RALDPLLYEKET 404 (567)
T ss_dssp STTTTSSSCCCCHHHHHH---------HHHHHHHHHHHHHHCTTCHHH-------HHHHHHHH-----HHHCTGGGHHHH
T ss_pred ccCccceeccCChhhHHh---------hHHHHHHHHHHHHhccccchh-------hhhHHHHH-----HhcccccCCHHH
Confidence 456777777777777664 344466677777777654321 00000000 011122344455
Q ss_pred ccCCCCCcEEE-CcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECC
Q 036593 360 IGNLRGLILLT-LDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLG 438 (574)
Q Consensus 360 ~~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~ 438 (574)
+..+++|+.|+ ++.+.+ ..|+.+.+++|.++...+..++.|++++|.+++ +|. +..+++|+.|+++
T Consensus 405 l~~l~~L~~L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls 471 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYL-----------DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLS 471 (567)
T ss_dssp HHHHHHHHHHCGGGHHHH-----------HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECC
T ss_pred HHHHHhcccCcchhhccc-----------chhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecC
Confidence 66777777777 444332 234445555555555444556667777777664 565 8899999999999
Q ss_pred CCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccC-cccccCCCCCCEeeCCCCccccc
Q 036593 439 SNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNI-PSTIGALVDLETLSLASNQFQGP 517 (574)
Q Consensus 439 ~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~ 517 (574)
+|.++ .+|..+..+++|++|+|++|.+++ +| .+..+++|++|++++|.+.+.. |..++++++|+.|++++|.+++.
T Consensus 472 ~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 472 HNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred ccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 99998 778899999999999999999986 45 7899999999999999999775 88899999999999999999965
Q ss_pred CCc---cccCCcCCCeeeC
Q 036593 518 IPE---SVGSLISLESLDL 533 (574)
Q Consensus 518 ~~~---~l~~~~~L~~L~l 533 (574)
.+. .+..+++|+.|++
T Consensus 549 ~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 549 EGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCTTHHHHHCTTCSEEEC
T ss_pred ccHHHHHHHHCcccCccCC
Confidence 442 2345788998864
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=2e-14 Score=126.83 Aligned_cols=127 Identities=24% Similarity=0.293 Sum_probs=86.7
Q ss_pred ceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCC
Q 036593 409 CHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRN 488 (574)
Q Consensus 409 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n 488 (574)
..+++++++++ .+|..+ .++|++|++++|.++ .++..+..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35666777766 444433 256777777777776 45566777777777777777776666666777777777777777
Q ss_pred cccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 489 QLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 489 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
.+....+..|.++++|++|+|++|.++...+..|..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666666777777777777777777555555667777777777777665
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=2.5e-15 Score=130.88 Aligned_cols=136 Identities=21% Similarity=0.219 Sum_probs=108.6
Q ss_pred cCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCC
Q 036593 425 CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDL 504 (574)
Q Consensus 425 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L 504 (574)
.+..+++|++|++++|++.. .+......++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 35567889999999998874 444333345899999999998775 568889999999999999986655666889999
Q ss_pred CEeeCCCCcccccCCc--cccCCcCCCeeeCCCCcccccCCcC----cccCCCCCeEeccCCccccc
Q 036593 505 ETLSLASNQFQGPIPE--SVGSLISLESLDLSGNNFSGKIPKS----LEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 505 ~~L~l~~n~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~l~l~~n~~~~~ 565 (574)
++|++++|.+. ..+. .+..+++|+.|++++|++. ..|.. +..+++|+.|++++|++...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 99999999987 4554 7888899999999999998 44553 88899999999999886543
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=6.9e-16 Score=164.32 Aligned_cols=187 Identities=23% Similarity=0.311 Sum_probs=109.6
Q ss_pred CCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeec
Q 036593 364 RGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLT 443 (574)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 443 (574)
+.++.+++..+.+... ....++.++|+.+.+.+ ++++.+.+. ..+..+..+++|+.|+|++|.+.
T Consensus 173 ~~~~~l~L~~n~~~~~------~~~~l~~l~Ls~~~i~~--------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~ 237 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA------NQALLQHKKLSQYSIDE--------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF 237 (727)
T ss_dssp ----------------------------------------------------------------CCCCCCEEECTTSCCS
T ss_pred CccceEEeeCCCCCcc------hhhHhhcCccCcccccC--------cccccccee-cChhhhccCCCCcEEECCCCCCC
Confidence 5577777777766542 12234555555555442 233334444 55667788888999999999887
Q ss_pred ccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCcccc
Q 036593 444 SSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVG 523 (574)
Q Consensus 444 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 523 (574)
.++..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..++++++|++|+|++|.++ .+|..|.
T Consensus 238 -~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~ 313 (727)
T 4b8c_D 238 -NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFG 313 (727)
T ss_dssp -CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTT
T ss_pred -CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhh
Confidence 56666668889999999999887 66777888899999999999988 56778888899999999999887 6777788
Q ss_pred CCcCCCeeeCCCCcccccCCcCcccCC-CCCeEeccCCccccccCCC
Q 036593 524 SLISLESLDLSGNNFSGKIPKSLEALS-HLKQFNVSQNMLEGEIPVK 569 (574)
Q Consensus 524 ~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~l~l~~n~~~~~~p~~ 569 (574)
.+++|+.|+|++|++....|..+..+. .+..+++++|.+++.+|..
T Consensus 314 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 889999999999998876666654432 1223567777777777764
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=1e-15 Score=163.12 Aligned_cols=190 Identities=19% Similarity=0.191 Sum_probs=113.6
Q ss_pred cCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCe
Q 036593 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRE 434 (574)
Q Consensus 355 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~ 434 (574)
..+..+..++.|+.|++++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-------------------~lp~~~~~l~~L~~ 274 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-------------------ELPAEIKNLSNLRV 274 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-------------------CCCGGGGGGTTCCE
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-------------------ccChhhhCCCCCCE
Confidence 34556778888888888888887 45555667888888888888877 55666788888999
Q ss_pred EECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCC-CCCEeeCCCCc
Q 036593 435 LRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALV-DLETLSLASNQ 513 (574)
Q Consensus 435 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~ 513 (574)
|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..|..+++|+.|+|++|.+.+..+..+..+. .+..+++++|.
T Consensus 275 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 275 LDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp EECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCc
Confidence 999999887 66888888889999999999886 4566688889999999999988877766665432 22346788888
Q ss_pred ccccCCccccCCcCCCeeeCCCC--------cccccCCcCcccCCCCCeEeccCCccccccCCCCCC
Q 036593 514 FQGPIPESVGSLISLESLDLSGN--------NFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSF 572 (574)
Q Consensus 514 ~~~~~~~~l~~~~~L~~L~l~~n--------~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~~~~ 572 (574)
+++..|. .|+.|++++| .+....+..+..+..++...+++|-+.+.++....|
T Consensus 353 l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~~~~~~ 413 (727)
T 4b8c_D 353 PEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYATPKMY 413 (727)
T ss_dssp CCCCCCC------C-----------------------------------------CCCGGGCCTTTC
T ss_pred ccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccccccCccccc
Confidence 8765554 3455666666 233333334455566666777888777666555443
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=3.8e-14 Score=124.97 Aligned_cols=125 Identities=26% Similarity=0.366 Sum_probs=95.5
Q ss_pred CeEeccCCcccc---cCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcce
Q 036593 391 QGLSLEDNNLEG---SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467 (574)
Q Consensus 391 ~~L~l~~~~~~~---~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~ 467 (574)
+.+++++++++. .+|..+++|++++|.++ .+|..+..+++|+.|++++|.+++..+.+|..+++|++|++++|.+.
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 345555555442 34557888888888887 56677888888888888888888777777888888888888888888
Q ss_pred ecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccc
Q 036593 468 DSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 468 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
...+..|..+++|++|++++|.+....+..|..+++|+.|++++|.+..
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7777778888888888888888886666677788888888888887764
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=7.7e-14 Score=121.55 Aligned_cols=133 Identities=26% Similarity=0.299 Sum_probs=75.7
Q ss_pred CCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCC
Q 036593 432 LRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLAS 511 (574)
Q Consensus 432 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 511 (574)
.+.++++++++. ..+..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+.++++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345566666554 223222 24566666666666554444555666666666666666544444555666666666666
Q ss_pred CcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccC
Q 036593 512 NQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIP 567 (574)
Q Consensus 512 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 567 (574)
|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 66665444455566666666666666664444445556666666666666655443
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=3e-14 Score=123.96 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=105.0
Q ss_pred ccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCC
Q 036593 384 VGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463 (574)
Q Consensus 384 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 463 (574)
+..+++|++|++++|+++ .++......++|++|++++|.+++. ..+..+++|++|++++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-------------------~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~ 73 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-------------------VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNN 73 (176)
T ss_dssp EECTTSCEEEECTTSCCC-------------------SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCS
T ss_pred cCCcCCceEEEeeCCCCc-------------------hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCC
Confidence 445667777777777666 2333333345899999999998754 6788889999999999
Q ss_pred CcceecCCccccCCCCCCEEeCCCCcccccCc-ccccCCCCCCEeeCCCCcccccCCc----cccCCcCCCeeeCCCCcc
Q 036593 464 NSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIP-STIGALVDLETLSLASNQFQGPIPE----SVGSLISLESLDLSGNNF 538 (574)
Q Consensus 464 ~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~----~l~~~~~L~~L~l~~n~~ 538 (574)
|.+....+..+..+++|++|++++|.+..... ..+..+++|+.|++++|.+. ..+. .+..+++|+.|++++|..
T Consensus 74 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 74 NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp SCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99987666666889999999999999974332 37888999999999999998 4555 388899999999999987
Q ss_pred cc
Q 036593 539 SG 540 (574)
Q Consensus 539 ~~ 540 (574)
..
T Consensus 153 ~~ 154 (176)
T 1a9n_A 153 KE 154 (176)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 141
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.43 E-value=4e-11 Score=118.26 Aligned_cols=81 Identities=2% Similarity=0.097 Sum_probs=47.5
Q ss_pred ccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCc
Q 036593 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNI 237 (574)
Q Consensus 158 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 237 (574)
+....+|+.+.+... ++.+...+|.++.+|+++.+..+ +..+...+|.++ +|+.+.+..+ +. .+....+.. .+|
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TDL 115 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CCC
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CCc
Confidence 445567888887764 55566777888888888888643 555666666665 5666655432 22 233333322 245
Q ss_pred Ceeeccc
Q 036593 238 EYLTLAI 244 (574)
Q Consensus 238 ~~L~l~~ 244 (574)
+.+.+..
T Consensus 116 ~~i~lp~ 122 (379)
T 4h09_A 116 DDFEFPG 122 (379)
T ss_dssp SEEECCT
T ss_pred ccccCCC
Confidence 5555543
No 142
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.43 E-value=7.5e-11 Score=116.27 Aligned_cols=317 Identities=9% Similarity=0.029 Sum_probs=163.5
Q ss_pred cCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCC
Q 036593 132 NSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIST 211 (574)
Q Consensus 132 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 211 (574)
.++....+|+.+.+... ++.+...+|.+|.+|+.+.+..+ +..+...+|.++ +|+++.+..+ +......+|..+ +
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D 114 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence 34566778888888653 44466678999999999999765 666777888887 6888877643 554555666554 7
Q ss_pred CcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEcc
Q 036593 212 IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIR 291 (574)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 291 (574)
|+.+.+..+- . .+....+..+ .++.+.+..+ +......+|..+..++.+.+.............. ...
T Consensus 115 L~~i~lp~~~-~-~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~------- 182 (379)
T 4h09_A 115 LDDFEFPGAT-T-EIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNK------- 182 (379)
T ss_dssp CSEEECCTTC-C-EECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EET-------
T ss_pred cccccCCCcc-c-cccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-ccc-------
Confidence 8888886542 2 2222222222 3444433321 2222333344444444444333221100000000 000
Q ss_pred CCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEEC
Q 036593 292 TNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTL 371 (574)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l 371 (574)
.. .....+..+..+..+.+.... .......+..+.+++.+.+
T Consensus 183 -~~-----------~~~~~~~~~~~~~~~~~~~~~--------------------------~~i~~~~f~~~~~l~~i~~ 224 (379)
T 4h09_A 183 -NK-----------TILESYPAAKTGTEFTIPSTV--------------------------KTVTAYGFSYGKNLKKITI 224 (379)
T ss_dssp -TS-----------SEEEECCTTCCCSEEECCTTC--------------------------CEECTTTTTTCSSCSEEEC
T ss_pred -cc-----------ceeccccccccccccccccce--------------------------eEEeecccccccccceeee
Confidence 00 001112222333333322110 0122233455566666666
Q ss_pred cCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCcccc
Q 036593 372 DFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLW 451 (574)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 451 (574)
..+ +......+|.++..|+.+.+..+ ++ .....+|.++.+|+.+.+..+ +......+|.
T Consensus 225 ~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~------------------~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~ 283 (379)
T 4h09_A 225 TSG-VTTLGDGAFYGMKALDEIAIPKN-VT------------------SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCS 283 (379)
T ss_dssp CTT-CCEECTTTTTTCSSCCEEEECTT-CC------------------EECTTTTTTCTTCCEEEECCC-CSEECTTTTT
T ss_pred ccc-eeEEccccccCCccceEEEcCCC-cc------------------EeCccccceeehhcccccccc-ceeccccccc
Confidence 433 33344455566666666655433 11 133445666666666666543 3334445666
Q ss_pred CCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCc
Q 036593 452 SLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLI 526 (574)
Q Consensus 452 ~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 526 (574)
.|.+|+.+.+.++.+......+|.+|.+|+.++|..+ +..+...+|.+|++|+.+.+..+ ++.....+|.+++
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 6666666666666665555566666666666666533 44445556666666666666543 4434455565553
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=1.3e-15 Score=135.36 Aligned_cols=162 Identities=23% Similarity=0.313 Sum_probs=124.1
Q ss_pred ccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCC
Q 036593 384 VGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463 (574)
Q Consensus 384 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 463 (574)
+...+.++.++++.+.+.+..|. ++ .+|..+..+++|++|++++|.+.+ ++ .+..+++|++|++++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~-----------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~ 79 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP-----------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGR 79 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT-----------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEE
T ss_pred HHhcccccCcchheeEeccccCc-----------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCC
Confidence 34455666666666666654331 11 333477888999999999999985 55 788899999999999
Q ss_pred CcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCC-ccccCCcCCCeeeCCCCcccccC
Q 036593 464 NSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIP-ESVGSLISLESLDLSGNNFSGKI 542 (574)
Q Consensus 464 ~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~ 542 (574)
|.+. .++..+..+++|++|++++|++.+. + .+..+++|++|++++|.+....+ ..+..+++|+.|++++|++....
T Consensus 80 n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 80 NLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp EEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred CCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 9987 4566667778999999999999853 3 57888999999999999885332 46888999999999999997655
Q ss_pred CcC----------cccCCCCCeEeccCCcccc
Q 036593 543 PKS----------LEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 543 ~~~----------l~~l~~L~~l~l~~n~~~~ 564 (574)
|.. +..+++|+.|+ +++++.
T Consensus 157 ~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 157 KENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 543 78899999987 676654
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=4.6e-15 Score=131.90 Aligned_cols=146 Identities=25% Similarity=0.325 Sum_probs=92.6
Q ss_pred CCCcEEEccCCcccccCc------hhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCC
Q 036593 66 SFLMSLDVTLNNFYGHLP------NELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSK 139 (574)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 139 (574)
..++.++++++.+.+..+ ..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 344444444444443333 367777777777777777764 44 6777777777777777776 45555556677
Q ss_pred CceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCC-ccccCCCCCCEEEccCCcccccCch----------hhcc
Q 036593 140 LEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIP-TEIGNLQNLESLALGTNNLSGLIPP----------AIFN 208 (574)
Q Consensus 140 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~----------~l~~ 208 (574)
|++|++++|.+.+ +| .+.++++|++|++++|.+..... ..+..+++|++|++++|++....+. .+..
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 7777777777763 33 46677777777777777664322 3566777777777777776544332 2556
Q ss_pred cCCCcEEE
Q 036593 209 ISTIRVLN 216 (574)
Q Consensus 209 ~~~L~~L~ 216 (574)
+++|+.|+
T Consensus 173 l~~L~~Ld 180 (198)
T 1ds9_A 173 LPNLKKLD 180 (198)
T ss_dssp CSSCSEEC
T ss_pred CCCcEEEC
Confidence 66666664
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=2.8e-12 Score=110.48 Aligned_cols=107 Identities=25% Similarity=0.280 Sum_probs=88.2
Q ss_pred CCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCC
Q 036593 431 SLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLA 510 (574)
Q Consensus 431 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 510 (574)
+.+.+++++|.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|++....+..|.++++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578899999887 455444 3788999999999888778888888999999999999887777778888999999999
Q ss_pred CCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 511 SNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 511 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
+|++.+..+..|..+++|+.|++++|++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999886666678888899999999998874
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=1.3e-14 Score=141.64 Aligned_cols=183 Identities=20% Similarity=0.166 Sum_probs=98.6
Q ss_pred CCCcEEECcCCCCcccCCcCccc-----cCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECC
Q 036593 364 RGLILLTLDFNDLNGTIPTSVGT-----LQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLG 438 (574)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~ 438 (574)
+.|+.|++++|.++......+.. .++|++|++++|.+++.. .......+++|++|+|+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~-----------------~~~l~~~L~~L~~L~Ls 134 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-----------------LRTLLPVFLRARKLGLQ 134 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-----------------HHHTHHHHHTEEEEECC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH-----------------HHHHHHHHHhccHhhcC
Confidence 55677777777766433322222 256777777776665321 11112234466777777
Q ss_pred CCeecccCCccc-----cCCCCCCeEeCCCCcceec----CCccccCCCCCCEEeCCCCcccccC----cccccCCCCCC
Q 036593 439 SNKLTSSIPSSL-----WSLEYILEINLSSNSLNDS----LPSNVQKLKVLRVLDLSRNQLSGNI----PSTIGALVDLE 505 (574)
Q Consensus 439 ~n~~~~~~~~~~-----~~~~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~ 505 (574)
+|.++......+ ...++|++|+|++|.+++. ++..+..+++|++|++++|.+.+.. ...+..+++|+
T Consensus 135 ~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~ 214 (372)
T 3un9_A 135 LNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214 (372)
T ss_dssp SSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCC
T ss_pred CCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcC
Confidence 776653322222 2356677777777766543 2233455677777777777765432 34455566777
Q ss_pred EeeCCCCccccc----CCccccCCcCCCeeeCCCCcccccCCcCcccCC---C--CCeEe--ccCCccc
Q 036593 506 TLSLASNQFQGP----IPESVGSLISLESLDLSGNNFSGKIPKSLEALS---H--LKQFN--VSQNMLE 563 (574)
Q Consensus 506 ~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~---~--L~~l~--l~~n~~~ 563 (574)
+|+|++|.+++. +..++...++|+.|++++|.++......+..+. . |+.+. +..+.++
T Consensus 215 ~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred eEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 777777777643 223344556777777777777654443333321 1 55555 5555544
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=4.9e-12 Score=108.90 Aligned_cols=107 Identities=23% Similarity=0.281 Sum_probs=93.3
Q ss_pred CceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCC
Q 036593 408 LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSR 487 (574)
Q Consensus 408 l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~ 487 (574)
.+.+++++++++ .+|..+ .++|++|++++|.+++..+..|..+++|++|+|++|.+....+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 458899999998 466555 37899999999999988888899999999999999999888777889999999999999
Q ss_pred CcccccCcccccCCCCCCEeeCCCCccccc
Q 036593 488 NQLSGNIPSTIGALVDLETLSLASNQFQGP 517 (574)
Q Consensus 488 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 517 (574)
|++....+..|.++++|++|+|++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999977777799999999999999988743
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=7.4e-12 Score=108.14 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=87.6
Q ss_pred CCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCC
Q 036593 432 LRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLAS 511 (574)
Q Consensus 432 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 511 (574)
-+.++++++++. .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|++....+..|.++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368899999886 5555443 7899999999999888788888899999999999999876666778889999999999
Q ss_pred CcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 512 NQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 512 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
|++....+..|..+++|+.|++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99886655668888999999999998873
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=1.1e-11 Score=107.15 Aligned_cols=105 Identities=23% Similarity=0.296 Sum_probs=92.0
Q ss_pred ceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCC
Q 036593 409 CHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRN 488 (574)
Q Consensus 409 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n 488 (574)
..+++++++++ .+|..+. ++|++|++++|++.+..+..+..+++|++|+|++|.+....+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 47889999987 5666553 89999999999999888889999999999999999998877777889999999999999
Q ss_pred cccccCcccccCCCCCCEeeCCCCcccc
Q 036593 489 QLSGNIPSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 489 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
++....+..|..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9997666678999999999999999884
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=9.6e-14 Score=135.49 Aligned_cols=164 Identities=18% Similarity=0.160 Sum_probs=119.1
Q ss_pred cCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCc-CCCCCCeEECCCCeecccCCcc-ccCCCCCCeEeCCCC
Q 036593 387 LQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLA-SLTSLRELRLGSNKLTSSIPSS-LWSLEYILEINLSSN 464 (574)
Q Consensus 387 ~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~L~~~ 464 (574)
.+.|++|++++|.++..... .+...+. ..++|++|+|++|.++...... ...+++|++|+|++|
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~--------------~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCT--------------VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHH--------------HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred HhhCCEEEecCCCCCHHHHH--------------HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 45677777777776532110 1112222 3479999999999986543332 234578999999999
Q ss_pred cceecCCccc-----cCCCCCCEEeCCCCcccccC----cccccCCCCCCEeeCCCCcccccC----CccccCCcCCCee
Q 036593 465 SLNDSLPSNV-----QKLKVLRVLDLSRNQLSGNI----PSTIGALVDLETLSLASNQFQGPI----PESVGSLISLESL 531 (574)
Q Consensus 465 ~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L 531 (574)
.+.+.....+ ...++|++|++++|.+.+.. ...+..+++|++|+|++|.+++.. ...+...++|+.|
T Consensus 137 ~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L 216 (372)
T 3un9_A 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216 (372)
T ss_dssp CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEE
T ss_pred CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeE
Confidence 9976543333 35689999999999987533 344577899999999999998643 4567778899999
Q ss_pred eCCCCcccccCC----cCcccCCCCCeEeccCCcccc
Q 036593 532 DLSGNNFSGKIP----KSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 532 ~l~~n~~~~~~~----~~l~~l~~L~~l~l~~n~~~~ 564 (574)
++++|.+++... ..+...++|++|++++|+|..
T Consensus 217 ~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred ECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 999999986433 345567999999999999864
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=3.6e-10 Score=109.95 Aligned_cols=102 Identities=22% Similarity=0.222 Sum_probs=83.3
Q ss_pred EccCC-eeeecCCccCcCCCCCCeEECCC-CeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCc
Q 036593 412 ELNGN-KLSGHIPPCLASLTSLRELRLGS-NKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQ 489 (574)
Q Consensus 412 ~l~~~-~l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 489 (574)
+++++ +++ .+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+.+..+..|..+++|+.|+|++|+
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 34443 444 5677 88888999999996 99887777888899999999999999988888888999999999999999
Q ss_pred ccccCcccccCCCCCCEeeCCCCcccc
Q 036593 490 LSGNIPSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 490 ~~~~~~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
+....+..+..++ |+.|+|.+|.+..
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9866666666555 9999999998874
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=6.9e-10 Score=107.92 Aligned_cols=105 Identities=25% Similarity=0.262 Sum_probs=88.1
Q ss_pred CeEECCCC-eecccCCccccCCCCCCeEeCCC-CcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCC
Q 036593 433 RELRLGSN-KLTSSIPSSLWSLEYILEINLSS-NSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLA 510 (574)
Q Consensus 433 ~~L~l~~n-~~~~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 510 (574)
..++++++ .++ .+|. +..+.+|++|+|++ |.+....+..|..+++|+.|+|++|++.+..+..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 787 4666 88888999999996 99988877888999999999999999988888888999999999999
Q ss_pred CCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 511 SNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 511 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
+|+++...+..|..++ |+.|++.+|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999866566666665 9999999998874
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=2.9e-10 Score=109.79 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=76.0
Q ss_pred CCCCCeEECCCCeecccCCcccc--CCCCCCeEeCCC--Ccc-eec----CCccc--cCCCCCCEEeCCCCcccccCccc
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLW--SLEYILEINLSS--NSL-NDS----LPSNV--QKLKVLRVLDLSRNQLSGNIPST 497 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~L~~--~~l-~~~----~~~~~--~~l~~L~~L~l~~n~~~~~~~~~ 497 (574)
.++|+.|+|..|.+.......+. .+++|++|+|+. +.. .+. +...+ ..+|+|++|++.+|.+.+.....
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 56777777777766533333332 567777777642 111 110 01112 24678888888887775332222
Q ss_pred c---cCCCCCCEeeCCCCcccccC----CccccCCcCCCeeeCCCCcccccCCcCccc-CCCCCeEeccCCc
Q 036593 498 I---GALVDLETLSLASNQFQGPI----PESVGSLISLESLDLSGNNFSGKIPKSLEA-LSHLKQFNVSQNM 561 (574)
Q Consensus 498 ~---~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~l~l~~n~ 561 (574)
+ ..+++|++|+|+.|.+++.. +..++.+++|+.|++++|.+++..-..+.. + ..++++++++
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 2 24678888888888777632 233455678888888888776543333433 2 3567777665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=3.5e-09 Score=102.25 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=41.1
Q ss_pred hcCCCCCCEEEccCCcCc---------cCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCch
Q 036593 86 LGKLGRLKFISFSFNKLS---------GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPS 156 (574)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (574)
...+++|+.|.+...... +.+...+..+|+|+.|.++++.-. ..+. + .+++|++|++..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 344556666665433211 112234455667777777665211 1222 2 256677777766655432222
Q ss_pred hcc--CCCCCCEEEcc
Q 036593 157 GIG--NLSNLFDLDLR 170 (574)
Q Consensus 157 ~l~--~l~~L~~L~l~ 170 (574)
.+. .+++|++|+++
T Consensus 212 ~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHSBCTTCCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 332 56677777664
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.68 E-value=3.2e-09 Score=92.47 Aligned_cols=115 Identities=15% Similarity=0.210 Sum_probs=56.1
Q ss_pred cCcCCCCCCeEECCCC-eeccc----CCccccCCCCCCeEeCCCCcceec----CCccccCCCCCCEEeCCCCccccc--
Q 036593 425 CLASLTSLRELRLGSN-KLTSS----IPSSLWSLEYILEINLSSNSLNDS----LPSNVQKLKVLRVLDLSRNQLSGN-- 493 (574)
Q Consensus 425 ~~~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~-- 493 (574)
.+...++|++|+|++| .+... +...+...++|++|+|++|.+.+. +...+...++|++|+|++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445666666776666 55432 223344455666666666665442 122333445555555555555432
Q ss_pred --CcccccCCCCCCEeeC--CCCcccccC----CccccCCcCCCeeeCCCCccc
Q 036593 494 --IPSTIGALVDLETLSL--ASNQFQGPI----PESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 494 --~~~~~~~~~~L~~L~l--~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+...+...++|++|+| ++|.++... ...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1233444455555555 445554321 222333345555555555443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=2.6e-09 Score=93.04 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=94.4
Q ss_pred CCccccCCCCCCeEeCCCC-cceec----CCccccCCCCCCEEeCCCCcccccC----cccccCCCCCCEeeCCCCcccc
Q 036593 446 IPSSLWSLEYILEINLSSN-SLNDS----LPSNVQKLKVLRVLDLSRNQLSGNI----PSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 446 ~~~~~~~~~~L~~L~L~~~-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
+...+...++|++|+|++| .+.+. +...+...++|++|+|++|.+.+.. ...+...++|++|+|++|.+++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4456777899999999999 88654 3445677899999999999997543 3445667899999999999986
Q ss_pred c----CCccccCCcCCCeeeC--CCCcccccC----CcCcccCCCCCeEeccCCcccc
Q 036593 517 P----IPESVGSLISLESLDL--SGNNFSGKI----PKSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 517 ~----~~~~l~~~~~L~~L~l--~~n~~~~~~----~~~l~~l~~L~~l~l~~n~~~~ 564 (574)
. +..++...++|++|++ ++|.++... .+.+...++|++|++++|.+..
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 4 3566777889999999 899998643 3445667999999999998753
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.56 E-value=8.4e-09 Score=87.04 Aligned_cols=85 Identities=12% Similarity=0.077 Sum_probs=57.9
Q ss_pred CCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCc-ccccCcccccCC----CCCCEeeCCCCc-ccccCCccccCCc
Q 036593 453 LEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQ-LSGNIPSTIGAL----VDLETLSLASNQ-FQGPIPESVGSLI 526 (574)
Q Consensus 453 ~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~----~~L~~L~l~~n~-~~~~~~~~l~~~~ 526 (574)
-..|++|++++|.+++.....+..|++|++|+|++|. +++.....+..+ ++|++|+|++|. +++..-..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3467778888777776666666777777788777774 555444455543 467777777774 6665555566677
Q ss_pred CCCeeeCCCCc
Q 036593 527 SLESLDLSGNN 537 (574)
Q Consensus 527 ~L~~L~l~~n~ 537 (574)
+|+.|++++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777775
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=1.7e-08 Score=85.16 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=51.3
Q ss_pred CCCCeEECCCCeecccCCccccCCCCCCeEeCCCCc-ceecCCccccCC----CCCCEEeCCCCc-ccccCcccccCCCC
Q 036593 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNS-LNDSLPSNVQKL----KVLRVLDLSRNQ-LSGNIPSTIGALVD 503 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~~~~ 503 (574)
.+|++|++++|.++......+..+++|++|+|++|. +++.....+..+ ++|++|++++|. +++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356777777776665555556666777777776663 555444444443 357777777664 55554555666677
Q ss_pred CCEeeCCCCc
Q 036593 504 LETLSLASNQ 513 (574)
Q Consensus 504 L~~L~l~~n~ 513 (574)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777664
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=2.7e-07 Score=84.22 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=45.2
Q ss_pred cCCCCCCEEeCCCCccccc--CcccccCCCCCCEeeCCCCcccccCCccccCCc--CCCeeeCCCCcccccCC-------
Q 036593 475 QKLKVLRVLDLSRNQLSGN--IPSTIGALVDLETLSLASNQFQGPIPESVGSLI--SLESLDLSGNNFSGKIP------- 543 (574)
Q Consensus 475 ~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~------- 543 (574)
..+++|++|+|++|.+.+. ++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++....|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 3456666666666666542 223445566666666666666643 2233333 66777777776664333
Q ss_pred cCcccCCCCCeEe
Q 036593 544 KSLEALSHLKQFN 556 (574)
Q Consensus 544 ~~l~~l~~L~~l~ 556 (574)
..+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1245667777665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.16 E-value=3.4e-07 Score=83.53 Aligned_cols=81 Identities=32% Similarity=0.350 Sum_probs=57.6
Q ss_pred cCCCCCCeEeCCCCcceec--CCccccCCCCCCEEeCCCCccccc-CcccccCCCCCCEeeCCCCcccccCC-------c
Q 036593 451 WSLEYILEINLSSNSLNDS--LPSNVQKLKVLRVLDLSRNQLSGN-IPSTIGALVDLETLSLASNQFQGPIP-------E 520 (574)
Q Consensus 451 ~~~~~L~~L~L~~~~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~-------~ 520 (574)
..+++|++|+|++|.+.+. ++..+..+++|+.|+|++|.+.+. ....+.++ +|++|++++|.+.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 4577888888888888763 345556788888888888888754 12233333 89999999998876444 2
Q ss_pred cccCCcCCCeee
Q 036593 521 SVGSLISLESLD 532 (574)
Q Consensus 521 ~l~~~~~L~~L~ 532 (574)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467778888875
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.81 E-value=6.2e-06 Score=70.97 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=53.7
Q ss_pred cCCCCCCeEECCCC-eeccc----CCccccCCCCCCeEeCCCCcceecC----CccccCCCCCCEEeCCCCcccccCc--
Q 036593 427 ASLTSLRELRLGSN-KLTSS----IPSSLWSLEYILEINLSSNSLNDSL----PSNVQKLKVLRVLDLSRNQLSGNIP-- 495 (574)
Q Consensus 427 ~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~L~~~~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~-- 495 (574)
..-+.|++|+|+++ ++... +..++....+|++|+|++|.+.+.. ...+..-+.|++|+|++|.|.+...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666776664 55322 2334445556666666666665432 2233344556666666665543221
Q ss_pred --ccccCCCCCCEeeCCCC---cccc----cCCccccCCcCCCeeeCCCCc
Q 036593 496 --STIGALVDLETLSLASN---QFQG----PIPESVGSLISLESLDLSGNN 537 (574)
Q Consensus 496 --~~~~~~~~L~~L~l~~n---~~~~----~~~~~l~~~~~L~~L~l~~n~ 537 (574)
..+...+.|++|+|++| .+.. .+..++...++|+.|+++.|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 23334445555555543 2221 122333444555555555443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.72 E-value=7.6e-06 Score=70.41 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=82.6
Q ss_pred CccccCCCCCCeEeCCCC-cceec----CCccccCCCCCCEEeCCCCcccccCc----ccccCCCCCCEeeCCCCccccc
Q 036593 447 PSSLWSLEYILEINLSSN-SLNDS----LPSNVQKLKVLRVLDLSRNQLSGNIP----STIGALVDLETLSLASNQFQGP 517 (574)
Q Consensus 447 ~~~~~~~~~L~~L~L~~~-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~ 517 (574)
...+..-++|++|+|+++ .+.+. +...+..-+.|+.|+|++|++.+... ..+...+.|++|+|++|.|+..
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 344556788999999885 77543 34556677889999999999875433 3445578899999999988864
Q ss_pred ----CCccccCCcCCCeeeCCCC---ccccc----CCcCcccCCCCCeEeccCCcc
Q 036593 518 ----IPESVGSLISLESLDLSGN---NFSGK----IPKSLEALSHLKQFNVSQNML 562 (574)
Q Consensus 518 ----~~~~l~~~~~L~~L~l~~n---~~~~~----~~~~l~~l~~L~~l~l~~n~~ 562 (574)
+.+++...+.|++|+|++| .++.. +.+.+..-++|+.|+++.|.+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3345666678999999865 44432 234456678899999987764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.53 E-value=0.0048 Score=49.36 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=42.9
Q ss_pred CEEeCCCCccc-ccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 481 RVLDLSRNQLS-GNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 481 ~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
..++-++++++ ..+|..+ .++|++|+|++|.++...+..|..+++|+.|+|++|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36777777775 2334333 2478999999999987666778888899999999988763
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.25 E-value=0.008 Score=48.03 Aligned_cols=37 Identities=30% Similarity=0.343 Sum_probs=18.4
Q ss_pred CCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccc
Q 036593 479 VLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQ 515 (574)
Q Consensus 479 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 515 (574)
+|+.|+|++|.++.+....|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555554444444455555555555555443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.82 E-value=1.4 Score=32.85 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=24.0
Q ss_pred eecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCC
Q 036593 467 NDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASN 512 (574)
Q Consensus 467 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 512 (574)
+.....+|.+|.+|+++.|-.+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3334455556666666665543 33344555666666666665543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=80.95 E-value=3 Score=31.03 Aligned_cols=45 Identities=18% Similarity=0.021 Sum_probs=22.3
Q ss_pred ecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCC
Q 036593 442 LTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSR 487 (574)
Q Consensus 442 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~ 487 (574)
++.....+|.+|.+|+.+.+..+- +.....+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 333344455555555555555432 223344555555555555544
Done!