BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036594
NSSSSSTKSSTTFKKKPRRKSSAFSKSKIQKTKTLSGTGSSTKVNVSSVVEKSSGEKQLE
QPKKSDKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELRQR
MGPGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQ
DWHETESWKLLKELANSAQHRAIVRRVTQPKPVQ

High Scoring Gene Products

Symbol, full name Information P value
AT5G35970 protein from Arabidopsis thaliana 6.8e-59

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036594
        (214 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2162858 - symbol:AT5G35970 species:3702 "Arabi...   610  6.8e-59   1


>TAIR|locus:2162858 [details] [associations]
            symbol:AT5G35970 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009570 "chloroplast
            stroma" evidence=IDA] [GO:0015996 "chlorophyll catabolic process"
            evidence=RCA] EMBL:CP002688 GO:GO:0009570 GO:GO:0003677
            GO:GO:0009941 InterPro:IPR014001 SMART:SM00487 IPI:IPI00520082
            RefSeq:NP_198446.3 UniGene:At.45828 ProteinModelPortal:F4K1G7
            SMR:F4K1G7 PRIDE:F4K1G7 EnsemblPlants:AT5G35970.1 GeneID:833589
            KEGG:ath:AT5G35970 OMA:DHFQREL Uniprot:F4K1G7
        Length = 961

 Score = 610 (219.8 bits), Expect = 6.8e-59, P = 6.8e-59
 Identities = 110/156 (70%), Positives = 139/156 (89%)

Query:    59 LEQPKKSDKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASDFASAEIQGEFSELR 118
             +E+PK +DK ++++AL+QNG+PLGRRDLG+ VV+WI Q M+AMASDFA+AE+QGEFSELR
Sbjct:    93 VEEPK-NDKELSLRALNQNGDPLGRRDLGRNVVKWISQAMKAMASDFATAEVQGEFSELR 151

Query:   119 QRMGPGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSL 178
             Q +G GLTFVI+AQPYLNAIPMP+G E +CLKA THYPTLFDHFQRELRDVLQ+L++K++
Sbjct:   152 QNVGSGLTFVIQAQPYLNAIPMPLGSEVICLKACTHYPTLFDHFQRELRDVLQDLERKNI 211

Query:   179 VQDWHETESWKLLKELANSAQHRAIVRRVTQPKPVQ 214
             ++ W E+ESWKLLKE+ANSAQHR + R+  Q KPVQ
Sbjct:   212 MESWKESESWKLLKEIANSAQHREVARKAAQAKPVQ 247


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      214       166   0.00097  107 3  11 22  0.39    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  156 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.75u 0.19s 15.94t   Elapsed:  00:00:01
  Total cpu time:  15.75u 0.19s 15.94t   Elapsed:  00:00:01
  Start:  Mon May 20 17:32:53 2013   End:  Mon May 20 17:32:54 2013

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