BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036594
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R9I0|AOC3_PONAB Membrane primary amine oxidase OS=Pongo abelii GN=AOC3 PE=2 SV=3
Length = 763
Score = 33.9 bits (76), Expect = 0.94, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 93 WICQGMRAMASDFASAEIQGEFSELRQRMGPGLTFVIEAQPYLNAI 138
W G + +D + E+ L QR+GPGL +AQP N I
Sbjct: 51 WTHPGQSQLFADLSREELTAVMRFLTQRLGPGLVDAAQAQPSDNCI 96
>sp|Q7RTY7|OVCH1_HUMAN Ovochymase-1 OS=Homo sapiens GN=OVCH1 PE=2 SV=2
Length = 1134
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 46 VSSVVEKSSGEKQLEQPKKSDKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMASD 104
+S E S+ +++E P D+A N S N PLGR L G W GM A D
Sbjct: 181 ISKTSEYSNVLQEMELPIMDDRACNTVLKSMNLPPLGRTMLCAGFPDW---GMDACQGD 236
>sp|O75106|AOC2_HUMAN Retina-specific copper amine oxidase OS=Homo sapiens GN=AOC2 PE=1
SV=2
Length = 756
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 93 WICQGMRAMASDFASAEIQGEFSELRQRMGPGLTFVIEAQPYLNAI 138
W G + +D + E+ L QR+GPGL +AQP N I
Sbjct: 47 WPHPGQSQLFADLSREELTAVMRFLTQRLGPGLVDAAQAQPSDNCI 92
>sp|P29805|PRTT_SERMA Extracellular serine protease OS=Serratia marcescens PE=3 SV=1
Length = 1045
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 7 TKSSTTFKKKPRRKSSAFSKSKIQKTKTLSGTGSSTKVNVSSVVEKSSGEKQLEQPKK-S 65
TK+ TF S+ K + +TL+ T T+ SV +S E L+Q +
Sbjct: 638 TKTDATFDS---LASTENDKEVARAVETLNATEPVTETAKRSVSIPASEEANLQQSDAGA 694
Query: 66 DKAVNVQALSQNGNPLGRRDLGKGVVRWICQGMRAMA----SDFASAEI 110
+AVN +A G+P+ LG R + Q R ++ +D ASA+I
Sbjct: 695 AQAVNEEASIVAGHPIYESFLGFTTARELQQATRQLSGQIHADMASAQI 743
>sp|Q16853|AOC3_HUMAN Membrane primary amine oxidase OS=Homo sapiens GN=AOC3 PE=1 SV=3
Length = 763
Score = 31.2 bits (69), Expect = 5.0, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 93 WICQGMRAMASDFASAEIQGEFSELRQRMGPGLTFVIEAQPYLNAI 138
W G + +D + E+ L QR+GPGL +A+P N +
Sbjct: 51 WTHPGQSQLFADLSREELTAVMRFLTQRLGPGLVDAAQARPSDNCV 96
>sp|Q8BQM9|MD12L_MOUSE Mediator of RNA polymerase II transcription subunit 12-like protein
OS=Mus musculus GN=Med12l PE=1 SV=2
Length = 2157
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 27/169 (15%)
Query: 29 IQKTKTLSGTGSSTKVNVSSVVEKSSGEKQLEQPKKSDKAVNVQALSQNGNPLGR----- 83
+ K + G NV+++ + G + L ++ A + A SQN G+
Sbjct: 1179 VLKAIMMLGDAKIGSNNVNTMKNEDFGMRGL---RRDGNAEDAWATSQNSKSYGKSISIE 1235
Query: 84 ----RDLGKGVVRWICQGMRAMASDFASAEIQGEFS-ELRQRMGPGLTFVIEAQPYLNAI 138
R+ + V+R ICQ E GE + +R+ +++ P L+ +
Sbjct: 1236 TANLREYARYVLRTICQ-----------QEWVGEHCLKEPERLCTDKELILD--PVLSNM 1282
Query: 139 PMPVGLEAVCLKAGTHYPTLFDHFQRE-LRDVLQELQQKSLVQDWHETE 186
L+ +C G T D+ QR+ ++ +LQ L+Q +L Q W E +
Sbjct: 1283 QAQKLLQLICYPHGIKECTEGDNLQRQHIKRILQNLEQWTLRQSWLELQ 1331
>sp|Q3M6Z4|PURL_ANAVT Phosphoribosylformylglycinamidine synthase 2 OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=purL PE=3 SV=1
Length = 777
Score = 30.4 bits (67), Expect = 9.5, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 16/174 (9%)
Query: 36 SGTGSSTKVNVSSVVEKSSGEKQLEQPKKSDKAVNVQALSQNGNPLGRRDLGKGVVRWIC 95
SG G+ S+ G + SD++++ + Q G+P + L + +
Sbjct: 201 SGIGNPVLYVGSTTGRDGMGGASFASAELSDESIDDRPAVQVGDPFLEKSLIEACLEAFK 260
Query: 96 QGMRAMASDFASAEIQGEFSELRQRMGPGLTFVIEAQPYLNAIPMPVGLEAVCLKAGTHY 155
G A D +A I SE+ + G G+ ++ P +P Y
Sbjct: 261 TGAVVAAQDMGAAGITCSTSEMAAKGGVGIELDLDKIPVRETGMIP-------------Y 307
Query: 156 PTLFDHFQRELRDVLQELQQKSLVQDWHETESWKLLKELANSAQHRAIVRRVTQ 209
L Q + V + +++ L+ +H W L +A + IVR + Q
Sbjct: 308 EYLLSESQERMLFVAHKGREQELIDIFHR---WGLQAVVAGTVIAEPIVRILFQ 358
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.125 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,265,352
Number of Sequences: 539616
Number of extensions: 2861058
Number of successful extensions: 9351
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 9076
Number of HSP's gapped (non-prelim): 297
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)