Query 036594
Match_columns 214
No_of_seqs 15 out of 17
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 05:18:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036594.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036594hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ist_A Glutamate racemase; str 79.8 0.6 2.1E-05 38.8 1.4 23 143-166 178-200 (269)
2 1zuw_A Glutamate racemase 1; ( 78.1 0.72 2.5E-05 37.7 1.3 16 151-166 184-199 (272)
3 2dwu_A Glutamate racemase; iso 75.7 0.94 3.2E-05 37.0 1.4 16 151-166 187-202 (276)
4 2gzm_A Glutamate racemase; enz 75.4 0.98 3.3E-05 36.6 1.4 16 151-166 183-198 (267)
5 2oho_A Glutamate racemase; iso 74.2 1.1 3.8E-05 36.4 1.4 16 151-166 191-206 (273)
6 2jfz_A Glutamate racemase; cel 73.2 1.2 4E-05 35.8 1.3 25 142-167 172-196 (255)
7 2jfn_A Glutamate racemase; cel 69.4 1.2 4.3E-05 36.5 0.7 16 151-166 203-218 (285)
8 2vvt_A Glutamate racemase; iso 68.6 1.7 5.9E-05 35.9 1.4 16 151-166 204-219 (290)
9 2jfq_A Glutamate racemase; cel 68.3 1.4 4.9E-05 36.3 0.8 16 151-166 203-218 (286)
10 3out_A Glutamate racemase; str 68.0 1.6 5.4E-05 36.2 1.0 21 143-164 178-198 (268)
11 1b73_A Glutamate racemase; iso 61.8 2.2 7.4E-05 34.1 0.7 16 151-166 177-192 (254)
12 3uhf_A Glutamate racemase; str 59.1 3.3 0.00011 34.8 1.4 23 143-166 196-218 (274)
13 3ojc_A Putative aspartate/glut 51.1 3.2 0.00011 33.2 0.0 12 151-162 197-208 (231)
14 1wty_A Hypothetical protein TT 48.3 14 0.00049 26.6 3.1 52 147-201 37-88 (119)
15 3qvl_A Putative hydantoin race 45.3 7.4 0.00025 31.6 1.3 23 143-166 174-196 (245)
16 3bs7_A Protein aveugle; sterIl 44.0 8 0.00027 25.9 1.1 25 89-113 10-37 (78)
17 2eq5_A 228AA long hypothetical 39.9 5.9 0.0002 30.3 -0.1 23 143-166 174-198 (228)
18 1jog_A Hypothetical protein HI 39.2 22 0.00077 27.0 3.1 52 147-201 56-112 (146)
19 1wwp_A Hypothetical protein TT 38.5 24 0.00083 25.5 3.1 53 147-201 36-90 (119)
20 2xed_A Putative maleate isomer 37.9 6.4 0.00022 32.2 -0.2 25 142-166 206-232 (273)
21 2xvc_A ESCRT-III, SSO0910; cel 37.7 15 0.0005 26.2 1.7 18 163-180 39-56 (59)
22 3dee_A Putative regulatory pro 32.5 35 0.0012 28.1 3.4 44 141-185 189-232 (249)
23 3s81_A Putative aspartate race 32.1 6.2 0.00021 32.6 -1.1 14 151-164 216-229 (268)
24 1jfl_A Aspartate racemase; alp 31.7 5.3 0.00018 31.0 -1.5 13 151-163 193-205 (228)
25 2zsk_A PH1733, 226AA long hypo 30.7 11 0.00037 29.3 0.1 19 143-162 185-203 (226)
26 3mjh_B Early endosome antigen 27.4 9.4 0.00032 24.1 -0.7 21 145-165 8-28 (34)
27 1v85_A Similar to ring finger 25.5 28 0.00095 24.3 1.4 26 88-113 23-51 (91)
28 3umv_A Deoxyribodipyrimidine p 24.6 58 0.002 29.3 3.7 42 143-187 364-411 (506)
29 1hlv_A CENP-B, major centromer 23.6 65 0.0022 22.2 3.0 25 84-108 75-110 (131)
30 1dnp_A DNA photolyase; DNA rep 22.8 40 0.0014 29.6 2.3 47 141-189 310-366 (471)
31 1np7_A DNA photolyase; protein 22.7 55 0.0019 28.6 3.1 46 142-189 325-380 (489)
32 3g2b_A Coenzyme PQQ synthesis 22.3 68 0.0023 23.0 3.0 43 138-180 52-94 (95)
33 2j07_A Deoxyribodipyrimidine p 20.9 45 0.0015 28.8 2.1 47 142-190 280-336 (420)
34 1owl_A Photolyase, deoxyribodi 20.1 48 0.0016 29.1 2.2 46 142-189 319-374 (484)
No 1
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=79.84 E-value=0.6 Score=38.80 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=17.1
Q ss_pred chHHHHhhhhccCCchhhHhHHHH
Q 036594 143 GLEAVCLKAGTHYPTLFDHFQREL 166 (214)
Q Consensus 143 GlEalCLKA~tHYPTLFDHFQREL 166 (214)
|.+++.| +|||||-|.+.+++.+
T Consensus 178 g~D~iVL-GCTh~pll~~~i~~~~ 200 (269)
T 3ist_A 178 KIDTVIL-GCTHYPLLKPIIENFM 200 (269)
T ss_dssp CCCEEEE-CSTTGGGGHHHHHHHH
T ss_pred CCCEEEE-CCCCHHHHHHHHHHHc
Confidence 4444444 7999999999988765
No 2
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=78.10 E-value=0.72 Score=37.70 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=14.0
Q ss_pred hhccCCchhhHhHHHH
Q 036594 151 AGTHYPTLFDHFQREL 166 (214)
Q Consensus 151 A~tHYPTLFDHFQREL 166 (214)
+|||||.|.+.+++.+
T Consensus 184 GCTh~pll~~~i~~~~ 199 (272)
T 1zuw_A 184 GCTHYPILKEAIQRYM 199 (272)
T ss_dssp ESTTGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHc
Confidence 7999999999888766
No 3
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=75.73 E-value=0.94 Score=36.98 Aligned_cols=16 Identities=44% Similarity=0.673 Sum_probs=14.2
Q ss_pred hhccCCchhhHhHHHH
Q 036594 151 AGTHYPTLFDHFQREL 166 (214)
Q Consensus 151 A~tHYPTLFDHFQREL 166 (214)
+|||||.|.+.+++.+
T Consensus 187 GCTh~p~l~~~i~~~~ 202 (276)
T 2dwu_A 187 GCTHYPLLESYIKKEL 202 (276)
T ss_dssp CSTTGGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc
Confidence 7999999999888766
No 4
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=75.43 E-value=0.98 Score=36.62 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=14.0
Q ss_pred hhccCCchhhHhHHHH
Q 036594 151 AGTHYPTLFDHFQREL 166 (214)
Q Consensus 151 A~tHYPTLFDHFQREL 166 (214)
+|||||.|.+.+++.+
T Consensus 183 GCTh~p~l~~~i~~~~ 198 (267)
T 2gzm_A 183 GCTHYPILGPVIKQVM 198 (267)
T ss_dssp CSTTGGGGHHHHHHHH
T ss_pred cccChHHHHHHHHHHc
Confidence 7999999998888766
No 5
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=74.17 E-value=1.1 Score=36.44 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=13.9
Q ss_pred hhccCCchhhHhHHHH
Q 036594 151 AGTHYPTLFDHFQREL 166 (214)
Q Consensus 151 A~tHYPTLFDHFQREL 166 (214)
+|||||.|.+.+++.+
T Consensus 191 GCTh~p~l~~~i~~~~ 206 (273)
T 2oho_A 191 GCTHYPLLRPIIQNVM 206 (273)
T ss_dssp CSTTGGGGHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHh
Confidence 5999999998888766
No 6
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=73.21 E-value=1.2 Score=35.82 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=18.6
Q ss_pred cchHHHHhhhhccCCchhhHhHHHHH
Q 036594 142 VGLEAVCLKAGTHYPTLFDHFQRELR 167 (214)
Q Consensus 142 ~GlEalCLKA~tHYPTLFDHFQRELR 167 (214)
.|.+++.| +|||||.|.+.+++.+-
T Consensus 172 ~~~d~iIL-GCTh~p~l~~~i~~~~~ 196 (255)
T 2jfz_A 172 ILPEVIIL-GCTHFPLIAQKIEGYFM 196 (255)
T ss_dssp SCCSEEEE-ESTTGGGGHHHHHHHHH
T ss_pred CCCCEEEE-cCcChHHHHHHHHHHhC
Confidence 45566655 79999999887776663
No 7
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=69.39 E-value=1.2 Score=36.53 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.4
Q ss_pred hhccCCchhhHhHHHH
Q 036594 151 AGTHYPTLFDHFQREL 166 (214)
Q Consensus 151 A~tHYPTLFDHFQREL 166 (214)
+|||||.|.+.+++.+
T Consensus 203 GCTh~p~l~~~i~~~l 218 (285)
T 2jfn_A 203 GCTHFPLLQEELLQVL 218 (285)
T ss_dssp CSTTGGGGHHHHHHHS
T ss_pred eCCCcHHHHHHHHHhc
Confidence 6999999988887654
No 8
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=68.58 E-value=1.7 Score=35.86 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=14.1
Q ss_pred hhccCCchhhHhHHHH
Q 036594 151 AGTHYPTLFDHFQREL 166 (214)
Q Consensus 151 A~tHYPTLFDHFQREL 166 (214)
+|||||.|.+.+++.+
T Consensus 204 GCTh~p~l~~~i~~~l 219 (290)
T 2vvt_A 204 GCTHYPLLRPVIQNVM 219 (290)
T ss_dssp CSTTGGGGHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHc
Confidence 7999999998888766
No 9
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=68.32 E-value=1.4 Score=36.29 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=13.8
Q ss_pred hhccCCchhhHhHHHH
Q 036594 151 AGTHYPTLFDHFQREL 166 (214)
Q Consensus 151 A~tHYPTLFDHFQREL 166 (214)
+|||||.|.+.+++.+
T Consensus 203 GCTh~p~l~~~i~~~l 218 (286)
T 2jfq_A 203 GCTHYPLLYKPIYDYF 218 (286)
T ss_dssp ESSSGGGGHHHHHHHT
T ss_pred cCcCHHHHHHHHHHHc
Confidence 7999999988887765
No 10
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=67.96 E-value=1.6 Score=36.16 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=15.9
Q ss_pred chHHHHhhhhccCCchhhHhHH
Q 036594 143 GLEAVCLKAGTHYPTLFDHFQR 164 (214)
Q Consensus 143 GlEalCLKA~tHYPTLFDHFQR 164 (214)
|.+++.| +|||||-|.+.+++
T Consensus 178 g~D~iIL-GCTh~pll~~~i~~ 198 (268)
T 3out_A 178 NIQALIL-GCTHYPIIKESIAK 198 (268)
T ss_dssp CCSEEEE-CSTTGGGGHHHHHH
T ss_pred CCCEEEE-CCCChHHHHHHHhc
Confidence 4444444 79999999999875
No 11
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=61.79 E-value=2.2 Score=34.13 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.6
Q ss_pred hhccCCchhhHhHHHH
Q 036594 151 AGTHYPTLFDHFQREL 166 (214)
Q Consensus 151 A~tHYPTLFDHFQREL 166 (214)
+|||||.|.+.+++++
T Consensus 177 GCT~~p~l~~~i~~~~ 192 (254)
T 1b73_A 177 GCTHYPLLKKEIKKFL 192 (254)
T ss_dssp CCCCTTCCHHHHHHHS
T ss_pred CccChHHHHHHHHHHc
Confidence 7999999988887765
No 12
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=59.11 E-value=3.3 Score=34.77 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=18.0
Q ss_pred chHHHHhhhhccCCchhhHhHHHH
Q 036594 143 GLEAVCLKAGTHYPTLFDHFQREL 166 (214)
Q Consensus 143 GlEalCLKA~tHYPTLFDHFQREL 166 (214)
|.+++.| +|||||-|.+.+++.+
T Consensus 196 g~D~iIL-GCTh~PlL~~~i~~~~ 218 (274)
T 3uhf_A 196 TPDALIL-ACTHFPLLGRSLSKYF 218 (274)
T ss_dssp CCSEEEE-CSTTGGGGHHHHHHHH
T ss_pred CCCEEEE-CCCChHHHHHHHHHHc
Confidence 6666665 7999999999888654
No 13
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=51.15 E-value=3.2 Score=33.17 Aligned_cols=12 Identities=17% Similarity=0.069 Sum_probs=10.5
Q ss_pred hhccCCchhhHh
Q 036594 151 AGTHYPTLFDHF 162 (214)
Q Consensus 151 A~tHYPTLFDHF 162 (214)
+|||||.|.+.+
T Consensus 197 GCTe~pll~~~~ 208 (231)
T 3ojc_A 197 GCTEITLLVNAQ 208 (231)
T ss_dssp CSGGGGGTCCGG
T ss_pred CCCCHHHhcccc
Confidence 699999999865
No 14
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=48.26 E-value=14 Score=26.63 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=37.2
Q ss_pred HHhhhhccCCchhhHhHHHHHHHHHHHHhchhhhhhccchhHHHHHHHHhhHhhh
Q 036594 147 VCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDWHETESWKLLKELANSAQHR 201 (214)
Q Consensus 147 lCLKA~tHYPTLFDHFQRELRdvL~~~Q~kgli~dWr~T~SWkLLKelAnSaqHR 201 (214)
+|.|.+.||=.--..--.--||++..+.+.|+|.|. +.|+-+-.+=|-.=|.
T Consensus 37 lawk~~k~~l~~~g~~~~s~rd~~r~a~~~glI~~~---~~w~~m~~~RN~~vH~ 88 (119)
T 1wty_A 37 LAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPED---PFWLEMLELRNLTNHT 88 (119)
T ss_dssp HHHHHHHHHHHHHTCCCSSHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCcH---HHHHHHHHHhhHhccc
Confidence 577777665321110112348999999999999998 7899999998888774
No 15
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=45.29 E-value=7.4 Score=31.58 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=14.8
Q ss_pred chHHHHhhhhccCCchhhHhHHHH
Q 036594 143 GLEAVCLKAGTHYPTLFDHFQREL 166 (214)
Q Consensus 143 GlEalCLKA~tHYPTLFDHFQREL 166 (214)
|.++++| +|||||-|-+.+++++
T Consensus 174 gad~IVL-GCTh~p~l~~~i~~~~ 196 (245)
T 3qvl_A 174 GSGAIVL-GSGGMATLAQQLTREL 196 (245)
T ss_dssp CCSEEEE-CCGGGGGGHHHHHHHH
T ss_pred CCCEEEE-CCCChHHHHHHHHHHc
Confidence 3334443 6999997777666554
No 16
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=44.03 E-value=8 Score=25.88 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=21.4
Q ss_pred HHHHHHHH---HHHHHHHHHHHhhhhcc
Q 036594 89 GVVRWICQ---GMRAMASDFASAEIQGE 113 (214)
Q Consensus 89 ~VV~Wl~q---gM~sMAs~fAsaE~qgd 113 (214)
-|++||+. ||...+..|...++.|+
T Consensus 10 ~V~~WL~~~~~gl~~y~~~F~~~~I~G~ 37 (78)
T 3bs7_A 10 DVLKWYRRHCGEYTQYEQLFAQHDITGR 37 (78)
T ss_dssp HHHHHHHHHSGGGGGGHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCCCHH
Confidence 58999998 99999999998888764
No 17
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=39.90 E-value=5.9 Score=30.29 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=13.7
Q ss_pred chHHHHhhhhccCCc--hhhHhHHHH
Q 036594 143 GLEAVCLKAGTHYPT--LFDHFQREL 166 (214)
Q Consensus 143 GlEalCLKA~tHYPT--LFDHFQREL 166 (214)
|-+++.| +|||||| +-+.+++.+
T Consensus 174 ~~d~IvL-gCT~~~t~~~~~~i~~~~ 198 (228)
T 2eq5_A 174 GVEVIAL-GCTGMSTIGIAPVLEEEV 198 (228)
T ss_dssp TCSEEEE-CCTHHHHHTCHHHHHHHH
T ss_pred CCCEEEE-CCCCcchHHHHHHHHHHc
Confidence 4444445 8999994 445454443
No 18
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=39.18 E-value=22 Score=27.00 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=38.0
Q ss_pred HHhhhhccCCchhhHh-----HHHHHHHHHHHHhchhhhhhccchhHHHHHHHHhhHhhh
Q 036594 147 VCLKAGTHYPTLFDHF-----QRELRDVLQELQQKSLVQDWHETESWKLLKELANSAQHR 201 (214)
Q Consensus 147 lCLKA~tHYPTLFDHF-----QRELRdvL~~~Q~kgli~dWr~T~SWkLLKelAnSaqHR 201 (214)
+|.|.+.||=..-..- -.--||++..+.+.|+|.|+ +.|+-+-.+=|-.-|.
T Consensus 56 lawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~---~~w~~m~~~RN~tvH~ 112 (146)
T 1jog_A 56 LSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM---SKWVAYRDMRNITSHT 112 (146)
T ss_dssp HHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH---HHHHHHHHHHTTGGGT
T ss_pred HHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH---HHHHHHHHHhhHhccc
Confidence 6888888763111000 12358999999999999998 7899999988888774
No 19
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=38.54 E-value=24 Score=25.48 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=37.5
Q ss_pred HHhhhhccCC-chhhHh-HHHHHHHHHHHHhchhhhhhccchhHHHHHHHHhhHhhh
Q 036594 147 VCLKAGTHYP-TLFDHF-QRELRDVLQELQQKSLVQDWHETESWKLLKELANSAQHR 201 (214)
Q Consensus 147 lCLKA~tHYP-TLFDHF-QRELRdvL~~~Q~kgli~dWr~T~SWkLLKelAnSaqHR 201 (214)
+|.|.+.||= .. ..+ -.--||++..+.+.|+|.|. ..+.|+-+-.+=|-.=|.
T Consensus 36 lawk~~k~~l~~~-~g~~~~s~rd~~r~a~~~glI~~~-~~~~w~~m~~~RN~~vH~ 90 (119)
T 1wwp_A 36 AFWKALQAYLREK-EGLEGASPKGVIRLAREVGLLRDE-EARLALGMVDDRSLTVHT 90 (119)
T ss_dssp HHHHHHHHHHHHH-HCCCCCSHHHHHHHHHHHTSSCHH-HHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHcCCCCch-HHHHHHHHHHHhhHhccc
Confidence 5677766653 11 000 23358999999999999997 455799999988888774
No 20
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=37.87 E-value=6.4 Score=32.16 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=17.8
Q ss_pred cchHHHHhhhhccCCch--hhHhHHHH
Q 036594 142 VGLEAVCLKAGTHYPTL--FDHFQREL 166 (214)
Q Consensus 142 ~GlEalCLKA~tHYPTL--FDHFQREL 166 (214)
.|-+++.|-||||||++ .+..+++|
T Consensus 206 ~gadaIvLg~CT~l~~~~~~~~le~~l 232 (273)
T 2xed_A 206 SEVDALVISCAVQMPSLPLVETAEREF 232 (273)
T ss_dssp TTCSEEEEESSSSSCCTTHHHHHHHHH
T ss_pred CCCCEEEEcCCCCcchHHhHHHHHHHh
Confidence 36777888889999996 45445444
No 21
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=37.69 E-value=15 Score=26.19 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhchhhh
Q 036594 163 QRELRDVLQELQQKSLVQ 180 (214)
Q Consensus 163 QRELRdvL~~~Q~kgli~ 180 (214)
..|.-++|..|+++|+|.
T Consensus 39 kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 39 KQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHCCCee
Confidence 457889999999999984
No 22
>3dee_A Putative regulatory protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.10A {Neisseria gonorrhoeae fa 1090}
Probab=32.45 E-value=35 Score=28.11 Aligned_cols=44 Identities=7% Similarity=0.123 Sum_probs=37.2
Q ss_pred CcchHHHHhhhhccCCchhhHhHHHHHHHHHHHHhchhhhhhccc
Q 036594 141 PVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQDWHET 185 (214)
Q Consensus 141 P~GlEalCLKA~tHYPTLFDHFQRELRdvL~~~Q~kgli~dWr~T 185 (214)
+.-++++|.-++..+|- ||-....+...|.++.++|+|...++.
T Consensus 189 ~~s~~~~~~~la~~~~~-~d~~~~~~~~~L~~~~~~Gii~~~~~~ 232 (249)
T 3dee_A 189 ALSFDTLAQTLVEFMPK-ADNWKNILLGKWSGWIEQRIIIPSLSA 232 (249)
T ss_dssp CBCHHHHHHHHGGGSCS-STHHHHHHHHHHHHHHHTTSEEECCC-
T ss_pred CCCHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHHHCCCcccChHH
Confidence 34578899999999996 788888899999999999999887754
No 23
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=32.13 E-value=6.2 Score=32.60 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=11.6
Q ss_pred hhccCCchhhHhHH
Q 036594 151 AGTHYPTLFDHFQR 164 (214)
Q Consensus 151 A~tHYPTLFDHFQR 164 (214)
+|||||-|.+.+++
T Consensus 216 GCTh~pll~~~l~~ 229 (268)
T 3s81_A 216 GCTEIPLIVAGHER 229 (268)
T ss_dssp CSTTHHHHHTTTGG
T ss_pred CccCHHHHHHHHhc
Confidence 69999999987654
No 24
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=31.68 E-value=5.3 Score=30.97 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=11.1
Q ss_pred hhccCCchhhHhH
Q 036594 151 AGTHYPTLFDHFQ 163 (214)
Q Consensus 151 A~tHYPTLFDHFQ 163 (214)
+|||||.|.+.++
T Consensus 193 GCT~~p~l~~~~~ 205 (228)
T 1jfl_A 193 GCTEVSVVLKQDD 205 (228)
T ss_dssp CSHHHHHHCCGGG
T ss_pred CCCChHhhhhhhc
Confidence 6999999987775
No 25
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=30.73 E-value=11 Score=29.26 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=12.4
Q ss_pred chHHHHhhhhccCCchhhHh
Q 036594 143 GLEAVCLKAGTHYPTLFDHF 162 (214)
Q Consensus 143 GlEalCLKA~tHYPTLFDHF 162 (214)
|-+++-| +|||||.|.+..
T Consensus 185 g~d~iiL-GCT~~p~l~~~~ 203 (226)
T 2zsk_A 185 GIEGVIL-GCTELPLAIKQG 203 (226)
T ss_dssp CCSEEEE-CSSSGGGTCCGG
T ss_pred CCCEEEE-CCCCHHHHhhcc
Confidence 3344433 699999987653
No 26
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=27.36 E-value=9.4 Score=24.07 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.2
Q ss_pred HHHHhhhhccCCchhhHhHHH
Q 036594 145 EAVCLKAGTHYPTLFDHFQRE 165 (214)
Q Consensus 145 EalCLKA~tHYPTLFDHFQRE 165 (214)
-.+|.|-++.+=.|.+||+.+
T Consensus 8 CP~C~~~l~s~~~L~~Hye~~ 28 (34)
T 3mjh_B 8 CPQCMKSLGSADELFKHYEAV 28 (34)
T ss_dssp CTTTCCEESSHHHHHHHHHHH
T ss_pred CcHHHHHcCCHHHHHHHHHhc
Confidence 358999999999999999764
No 27
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=25.46 E-value=28 Score=24.34 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=20.2
Q ss_pred hHHHHHHHH-HH--HHHHHHHHHhhhhcc
Q 036594 88 KGVVRWICQ-GM--RAMASDFASAEIQGE 113 (214)
Q Consensus 88 r~VV~Wl~q-gM--~sMAs~fAsaE~qgd 113 (214)
.-|++||++ || ...+..|...++.|+
T Consensus 23 ~dV~~WL~~~gl~~~~Y~~~F~~~~IdG~ 51 (91)
T 1v85_A 23 EEVVLWLEQLGPWASLYRDRFLSERVNGR 51 (91)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHH
Confidence 358999975 88 778888887777665
No 28
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=24.61 E-value=58 Score=29.33 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=32.0
Q ss_pred chHHHHhhhhccCCchhhHhHHHHHH------HHHHHHhchhhhhhccchh
Q 036594 143 GLEAVCLKAGTHYPTLFDHFQRELRD------VLQELQQKSLVQDWHETES 187 (214)
Q Consensus 143 GlEalCLKA~tHYPTLFDHFQRELRd------vL~~~Q~kgli~dWr~T~S 187 (214)
-+++.| .+.|||| +.|.-+|||+. -+.-+--+.| -||+..+.
T Consensus 364 ~~~~w~-~G~TG~p-~vDA~mrqL~~tG~mHnr~Rm~~ak~l-l~W~~g~~ 411 (506)
T 3umv_A 364 TREQLE-NAKTHDP-LWNASQLEMVHHGKMHGFMRMYWAKKI-LEWTSGPE 411 (506)
T ss_dssp CHHHHH-TTCSSCH-HHHHHHHHHHHHSCCCHHHHHHHHHHH-HHTSSSHH
T ss_pred cHHHHH-cCCCCCH-HHHHHHHHHHHhCchhHHHHHHHHHhh-ccCCCCHH
Confidence 488887 7999999 78999999964 2222333566 99999998
No 29
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=23.61 E-value=65 Score=22.21 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.5
Q ss_pred ccchhHHHHHHHH-----------HHHHHHHHHHHh
Q 036594 84 RDLGKGVVRWICQ-----------GMRAMASDFASA 108 (214)
Q Consensus 84 keLGr~VV~Wl~q-----------gM~sMAs~fAsa 108 (214)
.|+-+.++.||.+ -++.+|..||..
T Consensus 75 ~~~E~~L~~Wi~~~~~~g~pvs~~~I~~kA~~i~~~ 110 (131)
T 1hlv_A 75 DKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEE 110 (131)
T ss_dssp HHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Confidence 5789999999976 468888888865
No 30
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=22.84 E-value=40 Score=29.63 Aligned_cols=47 Identities=32% Similarity=0.509 Sum_probs=36.2
Q ss_pred CcchHHHHhhhhccCCchhhHhHHHHHH----------HHHHHHhchhhhhhccchhHH
Q 036594 141 PVGLEAVCLKAGTHYPTLFDHFQRELRD----------VLQELQQKSLVQDWHETESWK 189 (214)
Q Consensus 141 P~GlEalCLKA~tHYPTLFDHFQRELRd----------vL~~~Q~kgli~dWr~T~SWk 189 (214)
|..+++.|. +-|||| +.|.-+|||+. ++-..--+-|.-|||..+-|=
T Consensus 310 ~~~~~aW~~-G~TG~P-~vDAaMrqL~~tG~mHnr~RMivAsFL~k~L~idWr~g~~~F 366 (471)
T 1dnp_A 310 PAHLQAWQE-GKTGYP-IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYF 366 (471)
T ss_dssp HHHHHHHHH-TCSSCH-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHh-CCCCCH-HHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 345777774 899999 78999999864 455554567889999998874
No 31
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=22.65 E-value=55 Score=28.61 Aligned_cols=46 Identities=33% Similarity=0.393 Sum_probs=36.6
Q ss_pred cchHHHHhhhhccCCchhhHhHHHHHH----------HHHHHHhchhhhhhccchhHH
Q 036594 142 VGLEAVCLKAGTHYPTLFDHFQRELRD----------VLQELQQKSLVQDWHETESWK 189 (214)
Q Consensus 142 ~GlEalCLKA~tHYPTLFDHFQRELRd----------vL~~~Q~kgli~dWr~T~SWk 189 (214)
.-+++-|. +-|||| +.|.-+|||+. +.-..--+.|.-|||..+-|=
T Consensus 325 ~~~~aW~~-G~TG~P-~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F 380 (489)
T 1np7_A 325 VRFELWRS-GQTGYP-LVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWF 380 (489)
T ss_dssp HHHHHHHT-TCSSCH-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HHHHHHHc-CCCCCh-hHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCChhHHHHH
Confidence 45777774 889999 88999999864 466666678899999999883
No 32
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=22.30 E-value=68 Score=22.97 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=36.0
Q ss_pred CCCCcchHHHHhhhhccCCchhhHhHHHHHHHHHHHHhchhhh
Q 036594 138 IPMPVGLEAVCLKAGTHYPTLFDHFQRELRDVLQELQQKSLVQ 180 (214)
Q Consensus 138 iPMP~GlEalCLKA~tHYPTLFDHFQRELRdvL~~~Q~kgli~ 180 (214)
+.-+.-.+.+|-.-+.+|+.=-+-....+...|..|.++|+|+
T Consensus 52 ~DG~rtv~eIv~~L~~~y~~~~e~i~~DV~~FL~~L~~~g~I~ 94 (95)
T 3g2b_A 52 YDGTQSLAQIAQTLAAEFDADASEIETDVIELTTTLHQKRLLR 94 (95)
T ss_dssp CCSSSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHCcCEe
Confidence 4456677889999999999766778889999999999999985
No 33
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=20.87 E-value=45 Score=28.83 Aligned_cols=47 Identities=26% Similarity=0.246 Sum_probs=35.6
Q ss_pred cchHHHHhhhhccCCchhhHhHHHHHH----------HHHHHHhchhhhhhccchhHHH
Q 036594 142 VGLEAVCLKAGTHYPTLFDHFQRELRD----------VLQELQQKSLVQDWHETESWKL 190 (214)
Q Consensus 142 ~GlEalCLKA~tHYPTLFDHFQRELRd----------vL~~~Q~kgli~dWr~T~SWkL 190 (214)
..+++.|. +-|||| +.|.-+|||+. +.-..--+-|.-|||..+-|=.
T Consensus 280 ~~~~~w~~-G~TG~P-~vDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~g~~~F~ 336 (420)
T 2j07_A 280 ALFQAWYE-GKTGVP-LVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFR 336 (420)
T ss_dssp HHHHHHHT-TCSSCH-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCCcH-hHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 34777774 899999 88999999864 3444444677789999988843
No 34
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=20.13 E-value=48 Score=29.13 Aligned_cols=46 Identities=28% Similarity=0.484 Sum_probs=35.4
Q ss_pred cchHHHHhhhhccCCchhhHhHHHHHH----------HHHHHHhchhhhhhccchhHH
Q 036594 142 VGLEAVCLKAGTHYPTLFDHFQRELRD----------VLQELQQKSLVQDWHETESWK 189 (214)
Q Consensus 142 ~GlEalCLKA~tHYPTLFDHFQRELRd----------vL~~~Q~kgli~dWr~T~SWk 189 (214)
.-+++.|. +-|||| +.|.-+|||+. +.-..--+.|.-|||..+-|=
T Consensus 319 ~~~~aW~~-G~TG~P-~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F 374 (484)
T 1owl_A 319 ALFTAWTQ-AQTGYP-IVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFF 374 (484)
T ss_dssp HHHHHHHT-TCSSCH-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHHHHHHH
T ss_pred HHHHHHHc-CCCCCh-hHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34777774 899999 88999999864 444444467889999998884
Done!