BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036595
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVTGRIDPQ 41
M CN C V +A+ K GVEK + K +V G DP+
Sbjct: 9 MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPK 49
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT 35
M C+AC TV +AISK +GV K + VVT
Sbjct: 12 MTCSACPITVKKAISKVEGVSKVDVTFETRQAVVT 46
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT 35
M C AC TV +A+SK +GV K K VVT
Sbjct: 12 MTCAACPITVKKALSKVEGVSKVDVGFEKREAVVT 46
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT 35
M C AC ++ RA+ + KGV + + + R+ VT
Sbjct: 12 MRCAACASSIERALERLKGVAEASVTVATGRLTVT 46
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT--GRIDPQ 41
M C AC ++ RAI+K GV+ + + VV+ G PQ
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQ 54
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT--GRIDPQ 41
M C AC ++ RAI+K GV+ + + VV+ G PQ
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQ 54
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT--GRIDPQ 41
M C +C ++ RAI+K GV+ + + VV+ G PQ
Sbjct: 11 MDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQ 53
>pdb|3RGU|A Chain A, Structure Of Fap-Nra At Ph 5.0
pdb|3RGU|B Chain B, Structure Of Fap-Nra At Ph 5.0
pdb|3RGU|C Chain C, Structure Of Fap-Nra At Ph 5.0
pdb|3RGU|D Chain D, Structure Of Fap-Nra At Ph 5.0
Length = 132
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 68 PKGCRNNEENEDSYRALLDKTNEDLAILFDCC 99
P+G + EE +DS R LDK + +L D
Sbjct: 14 PRGSKGTEEKQDSVRENLDKMISEAEVLNDMA 45
>pdb|4HSB|A Chain A, S. Pombe 3-methyladenine Dna Glycosylase-like Protein Mag2
Bound To Damaged Dna
Length = 217
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 7 ERTVARAISKFKGVEKFTTDMNKHRVVVTGRID 39
E + ++SK KGV+++T +M + + GR+D
Sbjct: 130 EEELMESLSKIKGVKRWTIEM--YSIFTLGRLD 160
>pdb|4B21|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
Glycosylase Homolog Mag2
pdb|4B22|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
Glycosylase Homolog Mag2
pdb|4B23|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
Glycoslase Homolog Mag2
pdb|4B24|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
Glycoslase Homolog Mag2
Length = 232
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 7 ERTVARAISKFKGVEKFTTDMNKHRVVVTGRID 39
E + ++SK KGV+++T +M + + GR+D
Sbjct: 145 EEELMESLSKIKGVKRWTIEM--YSIFTLGRLD 175
>pdb|3R9P|A Chain A, Crystal Structure Of Acka From Mycobacterium
Paratuberculosis Atcc Baa-968 K-10
pdb|3R9P|B Chain B, Crystal Structure Of Acka From Mycobacterium
Paratuberculosis Atcc Baa-968 K-10
Length = 391
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 69 KGCRNNEENEDSYRALLDKTNEDLAILFDCCK 100
KG R ++ L+ TNE+LAI DC +
Sbjct: 356 KGARQISADDSPITVLVVPTNEELAIARDCVR 387
>pdb|3P4I|A Chain A, Crystal Structure Of Acetate Kinase From Mycobacterium
Avium
pdb|3P4I|B Chain B, Crystal Structure Of Acetate Kinase From Mycobacterium
Avium
pdb|4IZ9|A Chain A, Crystal Structure Of An Acetate Kinase From Mycobacterium
Avium Bound To An Unknown Acid-apcpp Conjugate And
Manganese
Length = 392
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 69 KGCRNNEENEDSYRALLDKTNEDLAILFDCCK 100
KG R ++ L+ TNE+LAI DC +
Sbjct: 357 KGARQISADDSPITVLVVPTNEELAIARDCVR 388
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I)
Form Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
Length = 76
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMN 28
M C++C T+ I K +GV++ ++
Sbjct: 12 MTCHSCTSTIEGKIGKLQGVQRIKVSLD 39
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMN 28
M C++C T+ I K +GV++ ++
Sbjct: 18 MTCHSCTSTIEGKIGKLQGVQRIKVSLD 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,778,511
Number of Sequences: 62578
Number of extensions: 77237
Number of successful extensions: 210
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 15
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)