Query 036597
Match_columns 139
No_of_seqs 117 out of 642
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02519 Auxin_inducible: Auxi 100.0 1.6E-38 3.4E-43 230.9 10.1 99 1-99 1-100 (100)
2 PLN03090 auxin-responsive fami 100.0 6.9E-36 1.5E-40 219.2 10.6 91 4-98 12-103 (104)
3 PLN03220 uncharacterized prote 100.0 3.8E-32 8.2E-37 199.5 9.8 86 5-96 10-101 (105)
4 PLN03219 uncharacterized prote 100.0 1.1E-31 2.4E-36 197.8 9.8 86 12-97 13-104 (108)
5 PRK02899 adaptor protein; Prov 87.4 0.48 1E-05 38.1 2.5 25 60-84 38-62 (197)
6 PRK02315 adaptor protein; Prov 83.5 0.87 1.9E-05 37.3 2.3 25 60-84 38-62 (233)
7 PF02214 BTB_2: BTB/POZ domain 79.8 0.95 2.1E-05 31.0 1.1 54 48-101 7-63 (94)
8 PF05389 MecA: Negative regula 79.0 0.63 1.4E-05 37.3 0.0 25 60-84 38-62 (220)
9 smart00666 PB1 PB1 domain. Pho 74.4 5.7 0.00012 26.3 3.7 49 44-97 8-67 (81)
10 cd05992 PB1 The PB1 domain is 71.9 8.5 0.00018 25.3 4.1 31 44-77 7-37 (81)
11 PF00651 BTB: BTB/POZ domain; 63.7 23 0.00051 23.7 5.1 56 42-101 14-74 (111)
12 cd06407 PB1_NLP A PB1 domain i 55.9 21 0.00046 24.8 3.8 47 42-92 5-63 (82)
13 cd06396 PB1_NBR1 The PB1 domai 54.3 35 0.00075 24.1 4.7 56 42-100 5-69 (81)
14 cd06398 PB1_Joka2 The PB1 doma 49.2 47 0.001 23.6 4.7 50 45-94 8-70 (91)
15 PF14317 YcxB: YcxB-like prote 45.6 37 0.00081 20.4 3.4 33 36-68 27-59 (62)
16 cd06397 PB1_UP1 Uncharacterize 45.0 49 0.0011 23.7 4.2 45 44-92 7-62 (82)
17 COG4862 MecA Negative regulato 40.4 20 0.00043 30.0 1.9 27 59-85 37-63 (224)
18 PF11822 DUF3342: Domain of un 39.6 54 0.0012 28.7 4.5 53 48-103 13-70 (317)
19 PF00564 PB1: PB1 domain; Int 39.5 40 0.00086 22.1 3.0 41 46-89 10-61 (84)
20 PF08948 DUF1859: Domain of un 37.0 16 0.00034 27.7 0.7 32 33-64 82-123 (126)
21 PF02209 VHP: Villin headpiece 36.7 18 0.00038 21.9 0.8 19 57-75 1-19 (36)
22 PF11834 DUF3354: Domain of un 36.7 28 0.00062 23.7 1.9 17 61-77 26-42 (69)
23 smart00153 VHP Villin headpiec 34.8 23 0.00049 21.4 1.1 19 57-75 1-19 (36)
24 cd06401 PB1_TFG The PB1 domain 33.1 79 0.0017 22.5 3.8 31 42-75 5-35 (81)
25 cd04395 RhoGAP_ARHGAP21 RhoGAP 29.6 1.1E+02 0.0024 23.8 4.5 42 61-102 19-60 (196)
26 PF12058 DUF3539: Protein of u 29.5 8.6 0.00019 27.8 -1.6 13 56-68 4-16 (88)
27 KOG4407 Predicted Rho GTPase-a 28.4 1.3E+02 0.0028 31.9 5.6 82 12-101 1122-1215(1973)
28 COG1759 5-formaminoimidazole-4 26.8 31 0.00067 30.7 1.0 76 35-111 89-198 (361)
29 COG4923 Predicted nuclease (RN 25.7 1.2E+02 0.0026 25.5 4.1 17 79-95 86-102 (245)
30 cd01406 SIR2-like Sir2-like: P 24.8 1E+02 0.0022 24.4 3.6 55 39-101 1-58 (242)
31 PF04304 DUF454: Protein of un 24.7 49 0.0011 21.7 1.5 22 57-78 5-26 (71)
32 PRK01021 lpxB lipid-A-disaccha 23.5 55 0.0012 31.0 2.0 34 49-82 377-415 (608)
33 cd01783 DAGK_delta_RA Ubiquiti 22.6 1.7E+02 0.0037 21.3 4.1 51 37-87 1-53 (97)
34 KOG4150 Predicted ATP-dependen 22.5 63 0.0014 31.5 2.2 39 9-62 613-651 (1034)
35 PF06849 DUF1246: Protein of u 22.4 5.3 0.00011 30.5 -4.0 21 35-55 69-92 (124)
36 COG3789 Uncharacterized protei 22.2 1.3E+02 0.0028 23.5 3.5 52 37-88 45-103 (146)
37 PF07429 Glyco_transf_56: 4-al 21.4 1.5E+02 0.0033 26.5 4.2 29 48-76 214-244 (360)
38 cd04404 RhoGAP-p50rhoGAP RhoGA 21.2 1.3E+02 0.0029 23.2 3.5 37 65-102 29-65 (195)
39 cd06404 PB1_aPKC PB1 domain is 21.0 1.8E+02 0.0039 20.8 3.8 37 44-84 7-43 (83)
40 PF02100 ODC_AZ: Ornithine dec 20.5 64 0.0014 23.5 1.5 32 47-78 23-58 (108)
41 PF04332 DUF475: Protein of un 20.4 64 0.0014 28.0 1.7 16 2-17 6-21 (294)
42 KOG1290 Serine/threonine prote 20.4 61 0.0013 30.6 1.6 19 36-54 62-83 (590)
No 1
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=1.6e-38 Score=230.90 Aligned_cols=99 Identities=36% Similarity=0.694 Sum_probs=90.1
Q ss_pred CcChHHHHHHHHHHhhhhccCCCccccCCCCccccCCCCceEEEecc-ceeEEEeecccCcHHHHHHHHhhHHhcCCCCC
Q 036597 1 MIGLKKLTVIAMKWRKMAGVGRRSIALPGISNCKQANKGHFVVYSTD-LRRFVIPLAYLHTNIFRELFEMSEEEFGLPTD 79 (139)
Q Consensus 1 m~~~kkL~~iakKWqk~a~~~r~~~s~p~~~~~s~vpkG~~~VYVge-~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~ 79 (139)
||+.+|....++||++.++.+++..+........++|+||||||||+ ++||+||++|||||+|++||++|||||||+++
T Consensus 1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~ 80 (100)
T PF02519_consen 1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQD 80 (100)
T ss_pred CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCC
Confidence 99999999999999998887776655444333459999999999997 89999999999999999999999999999999
Q ss_pred CCeeecCcHHHHHHHHHHHc
Q 036597 80 GPIILPCNAAFLEYVIYIVQ 99 (139)
Q Consensus 80 G~L~IPC~~~~Fe~vl~li~ 99 (139)
|+|+||||+++|++++|+|+
T Consensus 81 G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 81 GPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred CcEEeeCCHHHHHHHHHHhC
Confidence 99999999999999999985
No 2
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=6.9e-36 Score=219.16 Aligned_cols=91 Identities=23% Similarity=0.449 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhhhhccCCCccccCCCCccccCCCCceEEEecc-ceeEEEeecccCcHHHHHHHHhhHHhcCCCCCCCe
Q 036597 4 LKKLTVIAMKWRKMAGVGRRSIALPGISNCKQANKGHFVVYSTD-LRRFVIPLAYLHTNIFRELFEMSEEEFGLPTDGPI 82 (139)
Q Consensus 4 ~kkL~~iakKWqk~a~~~r~~~s~p~~~~~s~vpkG~~~VYVge-~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L 82 (139)
.++|++|+|+|++++..+... ......++|+||||||||+ ++||+||++|||||+|++||++|||||||+++|+|
T Consensus 12 ~~~~kq~l~r~~s~~~~~~~~----~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L 87 (104)
T PLN03090 12 TAMLKQILKRCSSLGKKQGYD----EDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGL 87 (104)
T ss_pred HHHHHHHHHHHHHhcccCCcc----cccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcE
Confidence 578999999999875433210 0001238999999999997 68999999999999999999999999999999999
Q ss_pred eecCcHHHHHHHHHHH
Q 036597 83 ILPCNAAFLEYVIYIV 98 (139)
Q Consensus 83 ~IPC~~~~Fe~vl~li 98 (139)
+||||+++|++++|+|
T Consensus 88 ~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 88 TIPCEEVVFRSLTSMI 103 (104)
T ss_pred EEeCCHHHHHHHHHHh
Confidence 9999999999999998
No 3
>PLN03220 uncharacterized protein; Provisional
Probab=99.97 E-value=3.8e-32 Score=199.46 Aligned_cols=86 Identities=29% Similarity=0.528 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhhhccCCCccccCCCCccccCCCCceEEEecc-----ceeEEEeecccCcHHHHHHHHhhHHhcCCCC-
Q 036597 5 KKLTVIAMKWRKMAGVGRRSIALPGISNCKQANKGHFVVYSTD-----LRRFVIPLAYLHTNIFRELFEMSEEEFGLPT- 78 (139)
Q Consensus 5 kkL~~iakKWqk~a~~~r~~~s~p~~~~~s~vpkG~~~VYVge-----~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~- 78 (139)
.+++||.++.. ++...|+..+. ..+|||||||||||| ++|||||++|||||+|++||++|||||||++
T Consensus 10 ~~~k~~~~~~~-~~~~~~~~~~~-----~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~ 83 (105)
T PLN03220 10 NATKQILKLNS-LANRNRTSSSS-----SDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHP 83 (105)
T ss_pred HHHHHHHHHHh-hcccccccccc-----cCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCC
Confidence 34567776655 43222221111 238999999999986 6999999999999999999999999999998
Q ss_pred CCCeeecCcHHHHHHHHH
Q 036597 79 DGPIILPCNAAFLEYVIY 96 (139)
Q Consensus 79 ~G~L~IPC~~~~Fe~vl~ 96 (139)
+|+|+||||++.|++++.
T Consensus 84 ~G~L~IPCd~~~F~~ll~ 101 (105)
T PLN03220 84 MGGLTIPCREEVFLDLIA 101 (105)
T ss_pred CCCEEeeCCHHHHHHHHH
Confidence 699999999999999984
No 4
>PLN03219 uncharacterized protein; Provisional
Probab=99.97 E-value=1.1e-31 Score=197.83 Aligned_cols=86 Identities=28% Similarity=0.530 Sum_probs=72.5
Q ss_pred HHHhhhhccCCCccccCCCCc--cccCCCCceEEEecc---ceeEEEeecccCcHHHHHHHHhhHHhcCCCC-CCCeeec
Q 036597 12 MKWRKMAGVGRRSIALPGISN--CKQANKGHFVVYSTD---LRRFVIPLAYLHTNIFRELFEMSEEEFGLPT-DGPIILP 85 (139)
Q Consensus 12 kKWqk~a~~~r~~~s~p~~~~--~s~vpkG~~~VYVge---~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~-~G~L~IP 85 (139)
+-||...-.+|+..+.++... +.++||||||||||+ ++||+||++|||||+|++||++|||||||++ +|+|+||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IP 92 (108)
T PLN03219 13 QIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIP 92 (108)
T ss_pred HHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEe
Confidence 457656556666555554443 338999999999996 7999999999999999999999999999996 6999999
Q ss_pred CcHHHHHHHHHH
Q 036597 86 CNAAFLEYVIYI 97 (139)
Q Consensus 86 C~~~~Fe~vl~l 97 (139)
||++.|++++.-
T Consensus 93 Cd~~~F~~ll~~ 104 (108)
T PLN03219 93 CREESFLHLITS 104 (108)
T ss_pred CCHHHHHHHHHh
Confidence 999999999853
No 5
>PRK02899 adaptor protein; Provisional
Probab=87.39 E-value=0.48 Score=38.05 Aligned_cols=25 Identities=32% Similarity=0.841 Sum_probs=21.9
Q ss_pred cHHHHHHHHhhHHhcCCCCCCCeee
Q 036597 60 TNIFRELFEMSEEEFGLPTDGPIIL 84 (139)
Q Consensus 60 hP~F~~LL~~aeeEfG~~~~G~L~I 84 (139)
+-+|.++|++|..|+||..+|||+|
T Consensus 38 e~lF~~mm~Ea~~e~~F~~~~pl~~ 62 (197)
T PRK02899 38 HQLFRDMMQEANKELGFEADGPIAV 62 (197)
T ss_pred HHHHHHHHHHhhhccCcccCCeEEE
Confidence 4578888999999999999999874
No 6
>PRK02315 adaptor protein; Provisional
Probab=83.46 E-value=0.87 Score=37.34 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=22.8
Q ss_pred cHHHHHHHHhhHHhcCCCCCCCeee
Q 036597 60 TNIFRELFEMSEEEFGLPTDGPIIL 84 (139)
Q Consensus 60 hP~F~~LL~~aeeEfG~~~~G~L~I 84 (139)
+-+|.++|+++..|+||..+|||+|
T Consensus 38 e~fF~~mm~Ea~~e~~F~~~~pl~~ 62 (233)
T PRK02315 38 EEFFYSMMDEVDEEDDFADEGPLWF 62 (233)
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 4689999999999999999999975
No 7
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=79.78 E-value=0.95 Score=30.99 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=40.2
Q ss_pred ceeEEEeecccC-c--HHHHHHHHhhHHhcCCCCCCCeeecCcHHHHHHHHHHHcCC
Q 036597 48 LRRFVIPLAYLH-T--NIFRELFEMSEEEFGLPTDGPIILPCNAAFLEYVIYIVQNP 101 (139)
Q Consensus 48 ~~RfvVp~~yL~-h--P~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~li~~~ 101 (139)
+++|.++.+-|. + ..|..++........-+.+|.+-|-++...|++|+..++.+
T Consensus 7 G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~ 63 (94)
T PF02214_consen 7 GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG 63 (94)
T ss_dssp TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence 578888887776 4 37778887653222334679999999999999999999983
No 8
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=78.97 E-value=0.63 Score=37.27 Aligned_cols=25 Identities=32% Similarity=0.749 Sum_probs=0.0
Q ss_pred cHHHHHHHHhhHHhcCCCCCCCeee
Q 036597 60 TNIFRELFEMSEEEFGLPTDGPIIL 84 (139)
Q Consensus 60 hP~F~~LL~~aeeEfG~~~~G~L~I 84 (139)
+-+|.++|++|.+|+||..+|||++
T Consensus 38 e~fF~~ileea~~e~~F~~~~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFENDGPLTF 62 (220)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 5689999999999999999999885
No 9
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=74.37 E-value=5.7 Score=26.30 Aligned_cols=49 Identities=31% Similarity=0.476 Sum_probs=33.5
Q ss_pred EeccceeEEEeecccCcHHHHHHHHhhHHhcCCC----------CCC-CeeecCcHHHHHHHHHH
Q 036597 44 YSTDLRRFVIPLAYLHTNIFRELFEMSEEEFGLP----------TDG-PIILPCNAAFLEYVIYI 97 (139)
Q Consensus 44 YVge~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~----------~~G-~L~IPC~~~~Fe~vl~l 97 (139)
|.|+.+||.||- ...|.+|..+..+.|+.. .+| .++|.++.+ ++.++.+
T Consensus 8 ~~~~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~D-l~~a~~~ 67 (81)
T smart00666 8 YGGETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDED-LEEAIEE 67 (81)
T ss_pred ECCEEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHH-HHHHHHH
Confidence 445679999985 778999999999999874 233 466666553 3333333
No 10
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=71.93 E-value=8.5 Score=25.25 Aligned_cols=31 Identities=35% Similarity=0.632 Sum_probs=26.3
Q ss_pred EeccceeEEEeecccCcHHHHHHHHhhHHhcCCC
Q 036597 44 YSTDLRRFVIPLAYLHTNIFRELFEMSEEEFGLP 77 (139)
Q Consensus 44 YVge~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~ 77 (139)
|-|+.+||.+|. .++.|.+|..+..+.||+.
T Consensus 7 ~~~~~~~~~~~~---~~~s~~~L~~~i~~~~~~~ 37 (81)
T cd05992 7 YGGEIRRFVVVS---RSISFEDLRSKIAEKFGLD 37 (81)
T ss_pred ecCCCEEEEEec---CCCCHHHHHHHHHHHhCCC
Confidence 346789999997 8889999999999988875
No 11
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=63.66 E-value=23 Score=23.74 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=40.0
Q ss_pred EEEeccceeEEEeeccc--CcHHHHHHHHhhHHhcCCCCCC--Ceeec-CcHHHHHHHHHHHcCC
Q 036597 42 VVYSTDLRRFVIPLAYL--HTNIFRELFEMSEEEFGLPTDG--PIILP-CNAAFLEYVIYIVQNP 101 (139)
Q Consensus 42 ~VYVge~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G--~L~IP-C~~~~Fe~vl~li~~~ 101 (139)
.+.||+.++|-+.-..| ..|.|+.+++.. +....+ .+.++ ++...|+.+++.+-.+
T Consensus 14 ~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~ 74 (111)
T PF00651_consen 14 TIRVGDGKTFYVHKNILAARSPYFRNLFEGS----KFKESTVPEISLPDVSPEAFEAFLEYMYTG 74 (111)
T ss_dssp EEEETTTEEEEE-HHHHHHHBHHHHHHHTTT----TSTTSSEEEEEETTSCHHHHHHHHHHHHHS
T ss_pred EEEECCCEEEeechhhhhccchhhhhccccc----ccccccccccccccccccccccccccccCC
Confidence 44566688898888877 569999999988 222333 35555 7789999999888644
No 12
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=55.91 E-value=21 Score=24.82 Aligned_cols=47 Identities=28% Similarity=0.444 Sum_probs=32.8
Q ss_pred EEEeccceeEEEeecccCcHHHHHHHHhhHHhcCCCC------------CCCeeecCcHHHHH
Q 036597 42 VVYSTDLRRFVIPLAYLHTNIFRELFEMSEEEFGLPT------------DGPIILPCNAAFLE 92 (139)
Q Consensus 42 ~VYVge~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~------------~G~L~IPC~~~~Fe 92 (139)
+.|-||..||-+|.. .-|++|-++-.+-|++.. +..++|.|+.++=|
T Consensus 5 ~~~~~d~~r~~l~~~----~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~e 63 (82)
T cd06407 5 ATYGEEKIRFRLPPS----WGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEE 63 (82)
T ss_pred EEeCCeEEEEEcCCC----CCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHH
Confidence 345567899988853 368999999888887643 33466777776544
No 13
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=54.32 E-value=35 Score=24.13 Aligned_cols=56 Identities=13% Similarity=0.253 Sum_probs=38.8
Q ss_pred EEEeccceeEEEeecccCcHHHHHHHHhhHHhcCCC---------CCCCeeecCcHHHHHHHHHHHcC
Q 036597 42 VVYSTDLRRFVIPLAYLHTNIFRELFEMSEEEFGLP---------TDGPIILPCNAAFLEYVIYIVQN 100 (139)
Q Consensus 42 ~VYVge~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~---------~~G~L~IPC~~~~Fe~vl~li~~ 100 (139)
+-|-||..||.++- -.++.|.+|.++-+.-||++ .+-+++|.|++++= ..+.+.++
T Consensus 5 aty~~d~~rf~~~~--~~~~~~~~L~~ev~~rf~l~~f~lKYlDde~e~v~lssd~eLe-E~~rl~~~ 69 (81)
T cd06396 5 VTYNGESQSFLVSD--SENTTWASVEAMVKVSFGLNDIQIKYVDEENEEVSVNSQGEYE-EALKSAVR 69 (81)
T ss_pred EEECCeEEEEEecC--CCCCCHHHHHHHHHHHhCCCcceeEEEcCCCCEEEEEchhhHH-HHHHHHHh
Confidence 34567889999974 22557999999999988864 34578899987653 33444443
No 14
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=49.19 E-value=47 Score=23.61 Aligned_cols=50 Identities=30% Similarity=0.376 Sum_probs=33.2
Q ss_pred eccceeEEEeecc-cCcHHHHHHHHhhHHhcCCCCC-----------C-CeeecCcHHHHHHH
Q 036597 45 STDLRRFVIPLAY-LHTNIFRELFEMSEEEFGLPTD-----------G-PIILPCNAAFLEYV 94 (139)
Q Consensus 45 Vge~~RfvVp~~y-L~hP~F~~LL~~aeeEfG~~~~-----------G-~L~IPC~~~~Fe~v 94 (139)
-|+-+||-+|..- -.+.-|..|.++-++-|....+ | -++|.||.++-+-+
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~ 70 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAI 70 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHH
Confidence 3568999999741 1145788898888888876542 2 35677776655444
No 15
>PF14317 YcxB: YcxB-like protein
Probab=45.57 E-value=37 Score=20.43 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=25.9
Q ss_pred CCCCceEEEeccceeEEEeecccCcHHHHHHHH
Q 036597 36 ANKGHFVVYSTDLRRFVIPLAYLHTNIFRELFE 68 (139)
Q Consensus 36 vpkG~~~VYVge~~RfvVp~~yL~hP~F~~LL~ 68 (139)
.-+.++.+|+++..-++||-+.++.--..++.+
T Consensus 27 e~~~~~~l~~~~~~~~~iPk~~f~~~e~~~f~~ 59 (62)
T PF14317_consen 27 ETKDYFYLYLGKNQAFIIPKRAFSEEEKEEFRE 59 (62)
T ss_pred EeCCEEEEEECCCeEEEEEHHHCCHhHHHHHHH
Confidence 357888999999999999999998555555544
No 16
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=45.00 E-value=49 Score=23.68 Aligned_cols=45 Identities=29% Similarity=0.456 Sum_probs=33.3
Q ss_pred EeccceeEEEeecccCcHHHHHHHHhhHHhcCCCC----------C-CCeeecCcHHHHH
Q 036597 44 YSTDLRRFVIPLAYLHTNIFRELFEMSEEEFGLPT----------D-GPIILPCNAAFLE 92 (139)
Q Consensus 44 YVge~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~----------~-G~L~IPC~~~~Fe 92 (139)
|-|+.|||..|. -|.+.+|-++.+.-|-++. + ..|+|.=+.++.+
T Consensus 7 ~~g~~RRf~~~~----~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d 62 (82)
T cd06397 7 FLGDTRRIVFPD----IPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQD 62 (82)
T ss_pred eCCceEEEecCC----CccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHH
Confidence 457789999998 8999999999988887662 3 3466665555444
No 17
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=40.38 E-value=20 Score=29.97 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=24.4
Q ss_pred CcHHHHHHHHhhHHhcCCCCCCCeeec
Q 036597 59 HTNIFRELFEMSEEEFGLPTDGPIILP 85 (139)
Q Consensus 59 ~hP~F~~LL~~aeeEfG~~~~G~L~IP 85 (139)
.|-+|.++++++..|-+|..+|||.|-
T Consensus 37 ~EE~F~~mMdEl~~ee~F~~~GpL~iq 63 (224)
T COG4862 37 TEELFYEMMDELNLEEDFKDEGPLWIQ 63 (224)
T ss_pred HHHHHHHHHHhcCCccccccCCceEEE
Confidence 478999999999999999999999874
No 18
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=39.62 E-value=54 Score=28.66 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=40.9
Q ss_pred ceeEEEeecccC--cHHHHHHHHh---hHHhcCCCCCCCeeecCcHHHHHHHHHHHcCCcc
Q 036597 48 LRRFVIPLAYLH--TNIFRELFEM---SEEEFGLPTDGPIILPCNAAFLEYVIYIVQNPAS 103 (139)
Q Consensus 48 ~~RfvVp~~yL~--hP~F~~LL~~---aeeEfG~~~~G~L~IPC~~~~Fe~vl~li~~~~~ 103 (139)
.+=|..|.+.|- ...|++.|.. ..++. .+=.|.+-||+..|+.++..++++.+
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~---~~idisVhCDv~iF~WLm~yv~~~~p 70 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRW---EEIDISVHCDVHIFEWLMRYVKGEPP 70 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcC---CCcceEEecChhHHHHHHHHhhcCCC
Confidence 578999998884 4679999966 33332 34568899999999999999998433
No 19
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=39.47 E-value=40 Score=22.11 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=27.4
Q ss_pred ccceeEEEeecccCcHHHHHHHHhhHHhcCCC----------CCC-CeeecCcHH
Q 036597 46 TDLRRFVIPLAYLHTNIFRELFEMSEEEFGLP----------TDG-PIILPCNAA 89 (139)
Q Consensus 46 ge~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~----------~~G-~L~IPC~~~ 89 (139)
|+.+| .+..-..+.|.+|.++.++.||.. .+| .++|.++.+
T Consensus 10 ~~~~~---~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~D 61 (84)
T PF00564_consen 10 GDIRR---IISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDED 61 (84)
T ss_dssp TEEEE---EEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHH
T ss_pred CeeEE---EEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHH
Confidence 45555 233345679999999999999984 344 355666554
No 20
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=36.96 E-value=16 Score=27.68 Aligned_cols=32 Identities=25% Similarity=0.598 Sum_probs=9.0
Q ss_pred cccCCCCceEEEeccceeEE----------EeecccCcHHHH
Q 036597 33 CKQANKGHFVVYSTDLRRFV----------IPLAYLHTNIFR 64 (139)
Q Consensus 33 ~s~vpkG~~~VYVge~~Rfv----------Vp~~yL~hP~F~ 64 (139)
|..=..|++||.|..+-+|+ +|+-|||.|+-+
T Consensus 82 ~~AG~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 82 CPAGKQGYFPLLVPGRAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp ------SS--EEE--SSSSEEEEEEEESS----S--------
T ss_pred ccCCCcccceeeccchhhhhhhhccCCCcceeeEEEeceeee
Confidence 33446899999997766666 688888887644
No 21
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=36.72 E-value=18 Score=21.93 Aligned_cols=19 Identities=47% Similarity=0.744 Sum_probs=15.1
Q ss_pred ccCcHHHHHHHHhhHHhcC
Q 036597 57 YLHTNIFRELFEMSEEEFG 75 (139)
Q Consensus 57 yL~hP~F~~LL~~aeeEfG 75 (139)
||+...|++++.++.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7899999999999999983
No 22
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=36.70 E-value=28 Score=23.75 Aligned_cols=17 Identities=29% Similarity=0.749 Sum_probs=15.4
Q ss_pred HHHHHHHHhhHHhcCCC
Q 036597 61 NIFRELFEMSEEEFGLP 77 (139)
Q Consensus 61 P~F~~LL~~aeeEfG~~ 77 (139)
-.++|||+.|++.||+.
T Consensus 26 ~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS 42 (69)
T ss_pred ccHHHHHHHHHHHhCCC
Confidence 47999999999999985
No 23
>smart00153 VHP Villin headpiece domain.
Probab=34.78 E-value=23 Score=21.36 Aligned_cols=19 Identities=47% Similarity=0.774 Sum_probs=16.9
Q ss_pred ccCcHHHHHHHHhhHHhcC
Q 036597 57 YLHTNIFRELFEMSEEEFG 75 (139)
Q Consensus 57 yL~hP~F~~LL~~aeeEfG 75 (139)
||+.-.|+..+.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7889999999999999983
No 24
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=33.11 E-value=79 Score=22.47 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=21.2
Q ss_pred EEEeccceeEEEeecccCcHHHHHHHHhhHHhcC
Q 036597 42 VVYSTDLRRFVIPLAYLHTNIFRELFEMSEEEFG 75 (139)
Q Consensus 42 ~VYVge~~RfvVp~~yL~hP~F~~LL~~aeeEfG 75 (139)
+||-||-||+.+|.+ .=.|.+|.++.+..|.
T Consensus 5 ~~~g~DiR~~~~~~~---~~t~~~L~~~v~~~F~ 35 (81)
T cd06401 5 AQLGDDIRRIPIHNE---DITYDELLLMMQRVFR 35 (81)
T ss_pred EEeCCeEEEEeccCc---cccHHHHHHHHHHHhc
Confidence 456567788766642 2268889988887776
No 25
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=29.64 E-value=1.1e+02 Score=23.79 Aligned_cols=42 Identities=21% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHHHHhhHHhcCCCCCCCeeecCcHHHHHHHHHHHcCCc
Q 036597 61 NIFRELFEMSEEEFGLPTDGPIILPCNAAFLEYVIYIVQNPA 102 (139)
Q Consensus 61 P~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~li~~~~ 102 (139)
|.|.+..-..-++.|.+.+|.-++|.+...-+.+...++++.
T Consensus 19 P~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~ 60 (196)
T cd04395 19 PLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGG 60 (196)
T ss_pred ChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCC
Confidence 455555555667889999999999999999999999998774
No 26
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=29.45 E-value=8.6 Score=27.84 Aligned_cols=13 Identities=31% Similarity=0.628 Sum_probs=9.2
Q ss_pred cccCcHHHHHHHH
Q 036597 56 AYLHTNIFRELFE 68 (139)
Q Consensus 56 ~yL~hP~F~~LL~ 68 (139)
.|||||.|..|-.
T Consensus 4 ~YLNHPtFGlLy~ 16 (88)
T PF12058_consen 4 TYLNHPTFGLLYR 16 (88)
T ss_dssp -EEEETTTEEEEE
T ss_pred ccccCCccchhee
Confidence 5899999876643
No 27
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=28.45 E-value=1.3e+02 Score=31.86 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=54.1
Q ss_pred HHHhhh-hccCCCcc-ccCC-----CCccccCCCCceEEEecc-----ceeEEEeecccCcHHHHHHHHhhHHhcCCCCC
Q 036597 12 MKWRKM-AGVGRRSI-ALPG-----ISNCKQANKGHFVVYSTD-----LRRFVIPLAYLHTNIFRELFEMSEEEFGLPTD 79 (139)
Q Consensus 12 kKWqk~-a~~~r~~~-s~p~-----~~~~s~vpkG~~~VYVge-----~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~ 79 (139)
++|+|. ++.+++.- +.+. ...|...|.|-|-|-..| -.||| |++.+.--..-|+||.+--
T Consensus 1122 ~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~~~GVrl~dCP~~~~n~yV--------P~iV~~C~~vVEt~Gl~~v 1193 (1973)
T KOG4407|consen 1122 RKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQPVLGVRLADCPTGSCNDYV--------PMIVQACVCVVETYGLDTV 1193 (1973)
T ss_pred cchhhhhhhhccCCCCCCCCcccccccccccCcCcccccccccCCcccccccc--------hHHHHHHHHHHhhcCccce
Confidence 489974 45555421 1111 112446666666666544 36664 7778888888899999999
Q ss_pred CCeeecCcHHHHHHHHHHHcCC
Q 036597 80 GPIILPCNAAFLEYVIYIVQNP 101 (139)
Q Consensus 80 G~L~IPC~~~~Fe~vl~li~~~ 101 (139)
|.-+||=.....-.+-+.+.+.
T Consensus 1194 GIYRIPGN~AAIs~l~E~ln~~ 1215 (1973)
T KOG4407|consen 1194 GIYRIPGNTAAISALKESLNNR 1215 (1973)
T ss_pred eEEecCCcHHHHHHHHHHHhcc
Confidence 9999999877766666655544
No 28
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=26.81 E-value=31 Score=30.66 Aligned_cols=76 Identities=20% Similarity=0.382 Sum_probs=45.1
Q ss_pred cCCCCceEEEec-c--ceeEEEee---------cccCcHHHHHHHHhhH----HhcCCC--CCCC-------------ee
Q 036597 35 QANKGHFVVYST-D--LRRFVIPL---------AYLHTNIFRELFEMSE----EEFGLP--TDGP-------------II 83 (139)
Q Consensus 35 ~vpkG~~~VYVg-e--~~RfvVp~---------~yL~hP~F~~LL~~ae----eEfG~~--~~G~-------------L~ 83 (139)
-+|.|-|++||| | ...|.||+ +- ..-.-..||++|. +.|.=+ .||+ --
T Consensus 89 ~IP~gSfv~Y~G~d~ie~~~~vP~fGnR~lLrwE~-~~~~~~~lLekAgi~~P~~~~~PeeIdr~VIVK~pgAkggRGyF 167 (361)
T COG1759 89 FIPHGSFVAYVGYDGIENEFEVPMFGNRELLRWEE-DRKLEYKLLEKAGLRIPKKYKSPEEIDRPVIVKLPGAKGGRGYF 167 (361)
T ss_pred EecCCceEEEecchhhhhcccCcccccHhHhhhhc-chhhHHHHHHHcCCCCCcccCChHHcCCceEEecCCccCCceEE
Confidence 479999999999 4 36677774 11 2233467888883 222211 2333 23
Q ss_pred ecCcH-HHHHHHHHHHcCCcc--HHHHHHHH
Q 036597 84 LPCNA-AFLEYVIYIVQNPAS--KNFLKALL 111 (139)
Q Consensus 84 IPC~~-~~Fe~vl~li~~~~~--~~~~~~~l 111 (139)
+.=+. ++.|.+-.++++++- +|+++|-+
T Consensus 168 iA~s~eef~ek~e~l~~~gvi~~edlkna~I 198 (361)
T COG1759 168 IASSPEEFYEKAERLLKRGVITEEDLKNARI 198 (361)
T ss_pred EEcCHHHHHHHHHHHHHcCCcchhhhhhcee
Confidence 44454 455666688887754 77766654
No 29
>COG4923 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=25.66 E-value=1.2e+02 Score=25.51 Aligned_cols=17 Identities=24% Similarity=0.512 Sum_probs=12.8
Q ss_pred CCCeeecCcHHHHHHHH
Q 036597 79 DGPIILPCNAAFLEYVI 95 (139)
Q Consensus 79 ~G~L~IPC~~~~Fe~vl 95 (139)
.....+||.+..+..+-
T Consensus 86 sSvF~vPcR~A~Y~~~y 102 (245)
T COG4923 86 SSVFSVPCRAALYSDIY 102 (245)
T ss_pred cceeccchHHHHHHHHH
Confidence 34578999999887763
No 30
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=24.82 E-value=1e+02 Score=24.45 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=35.2
Q ss_pred CceEEEeccc--eeEEEeecccCcHHHHHHHHhhHHhcCCCCCCCeeecC-cHHHHHHHHHHHcCC
Q 036597 39 GHFVVYSTDL--RRFVIPLAYLHTNIFRELFEMSEEEFGLPTDGPIILPC-NAAFLEYVIYIVQNP 101 (139)
Q Consensus 39 G~~~VYVge~--~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC-~~~~Fe~vl~li~~~ 101 (139)
|++++++|-+ .+ .+-|.+.+|++...+++|.+.+.... .+ +...+..+..++.+.
T Consensus 1 g~lvlFiGAG~S~~-------~glP~W~~Ll~~l~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~ 58 (242)
T cd01406 1 GRVVIFVGAGVSVS-------SGLPDWKTLLDEIASELGLEIDGYSV-EAKDENDYLELAELLEKE 58 (242)
T ss_pred CCEEEEecCccccc-------cCCCChHHHHHHHHHHcCCccchhhc-cccchhhHHHHHHHHHHH
Confidence 7888999853 22 47889999999999999876543111 11 223445555555444
No 31
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=24.72 E-value=49 Score=21.65 Aligned_cols=22 Identities=27% Similarity=0.464 Sum_probs=18.4
Q ss_pred ccCcHHHHHHHHhhHHhcCCCC
Q 036597 57 YLHTNIFRELFEMSEEEFGLPT 78 (139)
Q Consensus 57 yL~hP~F~~LL~~aeeEfG~~~ 78 (139)
.+|||.|+..++.-+|.=|.+-
T Consensus 5 l~~h~~~g~~I~~w~~~r~i~~ 26 (71)
T PF04304_consen 5 LLNHRLFGPYIRNWEEHRGIPR 26 (71)
T ss_pred HHcCchhHHHHHHHHHCCCcCH
Confidence 5799999999999998866553
No 32
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=23.46 E-value=55 Score=31.00 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=24.4
Q ss_pred eeEEEeecccCcHHHHHHH-----HhhHHhcCCCCCCCe
Q 036597 49 RRFVIPLAYLHTNIFRELF-----EMSEEEFGLPTDGPI 82 (139)
Q Consensus 49 ~RfvVp~~yL~hP~F~~LL-----~~aeeEfG~~~~G~L 82 (139)
++.=+|+.|.+||++.++= +.+.+++|.+.++++
T Consensus 377 ~~~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~i 415 (608)
T PRK01021 377 KDSPLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPI 415 (608)
T ss_pred HhcCCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCE
Confidence 3456999999999999853 234567888766554
No 33
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=22.61 E-value=1.7e+02 Score=21.35 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=35.8
Q ss_pred CCCceEEEeccce--eEEEeecccCcHHHHHHHHhhHHhcCCCCCCCeeecCc
Q 036597 37 NKGHFVVYSTDLR--RFVIPLAYLHTNIFRELFEMSEEEFGLPTDGPIILPCN 87 (139)
Q Consensus 37 pkG~~~VYVge~~--RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~IPC~ 87 (139)
.+|++-||.|.-+ -=-+.+..-+.-.-++++.+|-+.||.+++.+-..-|.
T Consensus 1 d~g~iKVY~G~L~~~~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~Lv 53 (97)
T cd01783 1 DKEVVKVYPGWLRVGVAYVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLI 53 (97)
T ss_pred CCceEEEecCccccCcceEEEEecccchHHHHHHHHHHHhCcccCCccccEEE
Confidence 3799999999621 11224445567788999999999999998665444443
No 34
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.52 E-value=63 Score=31.46 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=28.1
Q ss_pred HHHHHHhhhhccCCCccccCCCCccccCCCCceEEEeccceeEEEeecccCcHH
Q 036597 9 VIAMKWRKMAGVGRRSIALPGISNCKQANKGHFVVYSTDLRRFVIPLAYLHTNI 62 (139)
Q Consensus 9 ~iakKWqk~a~~~r~~~s~p~~~~~s~vpkG~~~VYVge~~RfvVp~~yL~hP~ 62 (139)
.|+--||+....||+. +.-++|||.+. |-|---|+.||.
T Consensus 613 S~aNl~QQ~GRAGRRN-------------k~SLavyva~~--~PVDQ~Y~~HP~ 651 (1034)
T KOG4150|consen 613 SIANLWQQAGRAGRRN-------------KPSLAVYVAFL--GPVDQYYMSHPD 651 (1034)
T ss_pred hHHHHHHHhccccccC-------------CCceEEEEEec--cchhhHhhcCcH
Confidence 6788899998888874 66789998642 223345788885
No 35
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=22.39 E-value=5.3 Score=30.54 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=12.4
Q ss_pred cCCCCceEEEec-cc--eeEEEee
Q 036597 35 QANKGHFVVYST-DL--RRFVIPL 55 (139)
Q Consensus 35 ~vpkG~~~VYVg-e~--~RfvVp~ 55 (139)
-||.|-|++||| |+ ++|.||+
T Consensus 69 ~VPhgSfv~Y~G~d~ie~~~~vP~ 92 (124)
T PF06849_consen 69 FVPHGSFVAYVGYDRIENEFKVPI 92 (124)
T ss_dssp E--BTTHHHHH-HHHHHHT-SS-E
T ss_pred EecCCCeeEeecHHHHhhcCCCCe
Confidence 589999999999 43 5588874
No 36
>COG3789 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.24 E-value=1.3e+02 Score=23.53 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=42.4
Q ss_pred CCCceEEEe---ccc---eeEEEeecccCcH-HHHHHHHhhHHhcCCCCCCCeeecCcH
Q 036597 37 NKGHFVVYS---TDL---RRFVIPLAYLHTN-IFRELFEMSEEEFGLPTDGPIILPCNA 88 (139)
Q Consensus 37 pkG~~~VYV---ge~---~RfvVp~~yL~hP-~F~~LL~~aeeEfG~~~~G~L~IPC~~ 88 (139)
.=|-+|+|| |.+ +-|.-|++-.++| .|.+.|-++++-+-...-|..++|=+.
T Consensus 45 eyGDLpi~V~~~g~Qiivetllwp~s~i~n~aeFNeflL~~qk~~PLSsvGit~v~gee 103 (146)
T COG3789 45 EYGDLPINVLFTGRQIIVETLLWPVSSISNPAEFNEFLLRNQKMMPLSSVGITSVQGEE 103 (146)
T ss_pred hcCCcceEEccCccEEeEEEEeccccccCCHHHHHHHHHhhccccccccccccccCchh
Confidence 468899998 344 7888999998887 599999999998887788877777654
No 37
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=21.42 E-value=1.5e+02 Score=26.46 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=23.2
Q ss_pred ceeEEEeecccC--cHHHHHHHHhhHHhcCC
Q 036597 48 LRRFVIPLAYLH--TNIFRELFEMSEEEFGL 76 (139)
Q Consensus 48 ~~RfvVp~~yL~--hP~F~~LL~~aeeEfG~ 76 (139)
..|++||+.|=. ..-..++.+.+++-||-
T Consensus 214 ~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~ 244 (360)
T PF07429_consen 214 DVKIIVPLSYGANNQAYIQQVIQAGKELFGA 244 (360)
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhcCc
Confidence 489999999974 56788888888888873
No 38
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=21.19 E-value=1.3e+02 Score=23.18 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=30.2
Q ss_pred HHHHhhHHhcCCCCCCCeeecCcHHHHHHHHHHHcCCc
Q 036597 65 ELFEMSEEEFGLPTDGPIILPCNAAFLEYVIYIVQNPA 102 (139)
Q Consensus 65 ~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~li~~~~ 102 (139)
.+++--++ .|.+.+|.-+++.+....+.+...++++.
T Consensus 29 ~~i~~l~~-~g~~~eGIFR~~g~~~~i~~l~~~~~~~~ 65 (195)
T cd04404 29 ETVEYLQA-HALTTEGIFRRSANTQVVKEVQQKYNMGE 65 (195)
T ss_pred HHHHHHHH-cCCCCCCeeeCCCcHHHHHHHHHHHhCCC
Confidence 44444444 89999999999999999999999998764
No 39
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=21.02 E-value=1.8e+02 Score=20.77 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=28.3
Q ss_pred EeccceeEEEeecccCcHHHHHHHHhhHHhcCCCCCCCeee
Q 036597 44 YSTDLRRFVIPLAYLHTNIFRELFEMSEEEFGLPTDGPIIL 84 (139)
Q Consensus 44 YVge~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~I 84 (139)
|-||-.++.++. ...|.+|.++.++-|.|..++++++
T Consensus 7 y~gdi~it~~d~----~~s~e~L~~~v~~~c~~~~~q~ft~ 43 (83)
T cd06404 7 YNGDIMITSIDP----SISLEELCNEVRDMCRFHNDQPFTL 43 (83)
T ss_pred ecCcEEEEEcCC----CcCHHHHHHHHHHHhCCCCCCcEEE
Confidence 446655555554 4559999999999999999888887
No 40
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=20.52 E-value=64 Score=23.52 Aligned_cols=32 Identities=31% Similarity=0.511 Sum_probs=17.9
Q ss_pred cceeEE-Eeeccc---CcHHHHHHHHhhHHhcCCCC
Q 036597 47 DLRRFV-IPLAYL---HTNIFRELFEMSEEEFGLPT 78 (139)
Q Consensus 47 e~~Rfv-Vp~~yL---~hP~F~~LL~~aeeEfG~~~ 78 (139)
++.=|| +|-..+ .-.-|..|||.|||.+|.++
T Consensus 23 ~~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~ 58 (108)
T PF02100_consen 23 ERTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH 58 (108)
T ss_dssp TTEEEEE-SS---SS--SHHHHHHHHHHHHHH----
T ss_pred CCEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE
Confidence 355555 454443 44679999999999998654
No 41
>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains.
Probab=20.40 E-value=64 Score=28.03 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=14.6
Q ss_pred cChHHHHHHHHHHhhh
Q 036597 2 IGLKKLTVIAMKWRKM 17 (139)
Q Consensus 2 ~~~kkL~~iakKWqk~ 17 (139)
+|++-|++|..+|||.
T Consensus 6 VNA~vLk~Ms~~Wq~~ 21 (294)
T PF04332_consen 6 VNATVLKRMSPFWQRR 21 (294)
T ss_pred hhHHHHHhhhHHHHHH
Confidence 6899999999999985
No 42
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.36 E-value=61 Score=30.57 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.8
Q ss_pred CCCCceEEEecc---ceeEEEe
Q 036597 36 ANKGHFVVYSTD---LRRFVIP 54 (139)
Q Consensus 36 vpkG~~~VYVge---~~RfvVp 54 (139)
.+-||.||++|| ..||+|-
T Consensus 62 ~kGGYHpV~IGD~F~~gRY~v~ 83 (590)
T KOG1290|consen 62 RKGGYHPVRIGDVFNGGRYHVQ 83 (590)
T ss_pred hcCCCceeeccccccCceEEEE
Confidence 478999999998 3899874
Done!