Query 036597
Match_columns 139
No_of_seqs 117 out of 642
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 05:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkp_A BTB/POZ domain-containi 56.3 19 0.00065 23.4 4.6 57 41-101 11-73 (109)
2 1vd2_A Protein kinase C, IOTA 54.3 19 0.00067 24.6 4.5 42 39-84 5-49 (89)
3 1und_A Advillin, P92; actin bi 48.1 5.9 0.0002 23.3 0.8 19 56-74 1-19 (37)
4 3drz_A BTB/POZ domain-containi 44.4 45 0.0015 22.6 5.1 61 39-101 6-71 (107)
5 1w8x_N Protein P31, protein C, 41.5 11 0.00036 27.5 1.5 32 33-64 82-123 (126)
6 2al3_A TUG long isoform; TUG U 40.1 22 0.00074 24.7 2.9 36 41-78 12-47 (90)
7 2vpk_A Myoneurin; transcriptio 38.2 53 0.0018 21.6 4.6 51 43-101 27-82 (116)
8 1r29_A B-cell lymphoma 6 prote 32.2 59 0.002 21.7 4.1 54 43-101 34-91 (127)
9 2xko_C PIPX, global nitrogen r 30.8 5.2 0.00018 28.0 -1.5 13 56-68 5-17 (89)
10 3ga1_A Nucleus accumbens-assoc 28.2 69 0.0024 21.5 3.9 52 42-101 37-92 (129)
11 1yu8_X Villin; alpha helix, 3- 25.5 22 0.00075 23.4 0.8 20 56-75 31-50 (67)
12 3op0_A Signal transduction pro 25.2 98 0.0034 26.0 4.9 42 33-74 258-299 (323)
13 2i46_A Adrenocortical dysplasi 24.0 50 0.0017 25.0 2.7 51 35-88 47-100 (161)
14 1qzp_A Dematin; villin headpie 22.7 19 0.00066 23.6 0.1 19 56-74 32-50 (68)
15 1ujs_A Actin-binding LIM prote 22.1 26 0.00088 24.2 0.7 20 56-75 46-65 (88)
16 1zav_U 50S ribosomal protein L 21.6 51 0.0018 18.3 1.8 13 63-75 18-30 (30)
17 1dd4_C 50S ribosomal protein L 21.4 65 0.0022 19.0 2.3 20 62-81 17-36 (40)
18 3n5b_B ASR0485 protein; PII, P 20.9 11 0.00036 27.4 -1.5 13 57-69 29-41 (112)
19 2k6m_S Supervillin; SVHP, HP, 20.8 24 0.00083 23.1 0.3 20 56-75 31-50 (67)
No 1
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=56.28 E-value=19 Score=23.39 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=39.6
Q ss_pred eEEEecc---ceeEEEeeccc--CcHHHHHHHHhhHHhcCCCCCCCeeec-CcHHHHHHHHHHHcCC
Q 036597 41 FVVYSTD---LRRFVIPLAYL--HTNIFRELFEMSEEEFGLPTDGPIILP-CNAAFLEYVIYIVQNP 101 (139)
Q Consensus 41 ~~VYVge---~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~li~~~ 101 (139)
+.+.||+ .++|-+.-..| ..|.|+.++...-.|- . +.|.+| .+...|+.++..+-.+
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~ 73 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSD 73 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCC
Confidence 3445665 38888888887 6899999997543332 2 678887 5889999999887754
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=54.30 E-value=19 Score=24.64 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=31.9
Q ss_pred CceEEEe---ccceeEEEeecccCcHHHHHHHHhhHHhcCCCCCCCeee
Q 036597 39 GHFVVYS---TDLRRFVIPLAYLHTNIFRELFEMSEEEFGLPTDGPIIL 84 (139)
Q Consensus 39 G~~~VYV---ge~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~I 84 (139)
|-+.|-+ ||-.|+-||. ...|++|.++-.+-|++..+.++++
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred CeEEEEEEeCCeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 4455543 6778888887 4689999999999999876666655
No 3
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=48.10 E-value=5.9 Score=23.31 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=17.1
Q ss_pred cccCcHHHHHHHHhhHHhc
Q 036597 56 AYLHTNIFRELFEMSEEEF 74 (139)
Q Consensus 56 ~yL~hP~F~~LL~~aeeEf 74 (139)
.||+...|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999998
No 4
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=44.42 E-value=45 Score=22.63 Aligned_cols=61 Identities=8% Similarity=0.132 Sum_probs=42.4
Q ss_pred CceEEEeccceeEEEeecccC-cH--HHHHHHHhhHHhcC--CCCCCCeeecCcHHHHHHHHHHHcCC
Q 036597 39 GHFVVYSTDLRRFVIPLAYLH-TN--IFRELFEMSEEEFG--LPTDGPIILPCNAAFLEYVIYIVQNP 101 (139)
Q Consensus 39 G~~~VYVge~~RfvVp~~yL~-hP--~F~~LL~~aeeEfG--~~~~G~L~IPC~~~~Fe~vl~li~~~ 101 (139)
..+.+-|| .++|.+..+-|. +| .|..|.... .++. .+.+|.+-|..|...|++||..++.+
T Consensus 6 ~~v~LNVG-G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g 71 (107)
T 3drz_A 6 KWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHG 71 (107)
T ss_dssp CEEEEEET-TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHS
T ss_pred CEEEEEEC-CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCC
Confidence 34555676 678888876664 34 566664422 1232 34679999999999999999998865
No 5
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=41.53 E-value=11 Score=27.54 Aligned_cols=32 Identities=28% Similarity=0.611 Sum_probs=21.0
Q ss_pred cccCCCCceEEEeccceeEE----------EeecccCcHHHH
Q 036597 33 CKQANKGHFVVYSTDLRRFV----------IPLAYLHTNIFR 64 (139)
Q Consensus 33 ~s~vpkG~~~VYVge~~Rfv----------Vp~~yL~hP~F~ 64 (139)
|..=..|++||.|..+-+|+ +|+-|||.|+-+
T Consensus 82 ~~AG~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 82 CPAGKQGYFPLLVPGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCCCCCSSCCEEECCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred ccCCCcccceeeccchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 33456899999997766666 688899988744
No 6
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=40.06 E-value=22 Score=24.66 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=27.3
Q ss_pred eEEEeccceeEEEeecccCcHHHHHHHHhhHHhcCCCC
Q 036597 41 FVVYSTDLRRFVIPLAYLHTNIFRELFEMSEEEFGLPT 78 (139)
Q Consensus 41 ~~VYVge~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~ 78 (139)
+.|.-...+|+.|++. ..-.+.++|++|=+.|||+.
T Consensus 12 v~Vl~~n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 12 VSVLAPNGRRHTVKVT--PSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp EEEECTTSCEEEECCC--TTSBHHHHHHHHHHHTTCCG
T ss_pred EEEEcCCCcEEEEEEC--CCCCHHHHHHHHHHHhCCCh
Confidence 4444456899999983 34477899999999999974
No 7
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=38.23 E-value=53 Score=21.59 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=37.7
Q ss_pred EEeccceeEEEeeccc--CcHHHHHHHHhhHHhcCCCCCCCeeec---CcHHHHHHHHHHHcCC
Q 036597 43 VYSTDLRRFVIPLAYL--HTNIFRELFEMSEEEFGLPTDGPIILP---CNAAFLEYVIYIVQNP 101 (139)
Q Consensus 43 VYVge~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~IP---C~~~~Fe~vl~li~~~ 101 (139)
+.|| .++|-+.-..| ..|.|+.++... .++.+.|+ .+...|+.++..+-.+
T Consensus 27 l~v~-~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~ 82 (116)
T 2vpk_A 27 IVIG-EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTG 82 (116)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHS
T ss_pred EEEC-CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCC
Confidence 3344 46777776666 579999998754 35678887 6889999999887654
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=32.22 E-value=59 Score=21.72 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=39.5
Q ss_pred EEeccceeEEEeeccc--CcHHHHHHHHhhHHhcCCCCCCCeee-c-CcHHHHHHHHHHHcCC
Q 036597 43 VYSTDLRRFVIPLAYL--HTNIFRELFEMSEEEFGLPTDGPIIL-P-CNAAFLEYVIYIVQNP 101 (139)
Q Consensus 43 VYVge~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~I-P-C~~~~Fe~vl~li~~~ 101 (139)
+.|| .++|-+.-..| ..|.|+.++...-.| ....|.| + .+...|+.++..+-.+
T Consensus 34 l~v~-~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg 91 (127)
T 1r29_A 34 IVVS-REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTS 91 (127)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHS
T ss_pred EEEC-CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCC
Confidence 3344 46777776666 689999999865444 4678999 4 6789999999887644
No 9
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=30.76 E-value=5.2 Score=28.00 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=10.0
Q ss_pred cccCcHHHHHHHH
Q 036597 56 AYLHTNIFRELFE 68 (139)
Q Consensus 56 ~yL~hP~F~~LL~ 68 (139)
.|||||.|.-|-.
T Consensus 5 ~YLNHPtFGlLy~ 17 (89)
T 2xko_C 5 NYLNHPTFGLLYQ 17 (89)
T ss_dssp CEEEETTTEEEEE
T ss_pred ccccCCccchhhe
Confidence 5999999976643
No 10
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=28.18 E-value=69 Score=21.54 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=38.2
Q ss_pred EEEeccceeEEEeecccC--cHHHHHHHHhhHHhcCCCCCCCeeec--CcHHHHHHHHHHHcCC
Q 036597 42 VVYSTDLRRFVIPLAYLH--TNIFRELFEMSEEEFGLPTDGPIILP--CNAAFLEYVIYIVQNP 101 (139)
Q Consensus 42 ~VYVge~~RfvVp~~yL~--hP~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~li~~~ 101 (139)
.+.|| .++|-+.=..|. .|.|+.++... ....|.|| .+...|+.++..+-.+
T Consensus 37 ~l~v~-~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 37 SVVVK-GHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp EEEET-TEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred EEEEC-CEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 34444 566766655554 69999998875 55788996 8899999999988654
No 11
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=25.52 E-value=22 Score=23.36 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=18.4
Q ss_pred cccCcHHHHHHHHhhHHhcC
Q 036597 56 AYLHTNIFRELFEMSEEEFG 75 (139)
Q Consensus 56 ~yL~hP~F~~LL~~aeeEfG 75 (139)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 12
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=25.18 E-value=98 Score=26.05 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=29.9
Q ss_pred cccCCCCceEEEeccceeEEEeecccCcHHHHHHHHhhHHhc
Q 036597 33 CKQANKGHFVVYSTDLRRFVIPLAYLHTNIFRELFEMSEEEF 74 (139)
Q Consensus 33 ~s~vpkG~~~VYVge~~RfvVp~~yL~hP~F~~LL~~aeeEf 74 (139)
.|-...|..||=.-+...=++-+-=.|-|++|+||+-.+|-|
T Consensus 258 ~ScTrlGqwAIgYV~s~g~I~qtip~nk~l~qaL~dG~~eg~ 299 (323)
T 3op0_A 258 PSCTRLGQWAIGYVSSDGSILQTIPANKPLSQVLLEGQKDGF 299 (323)
T ss_dssp ECSSSTTCEEEEEECTTSCEEEECCCSSCHHHHHHHHHHTTS
T ss_pred eccCccCceEEEEEcCCCceeecCCCCcHHHHHHHhccccce
Confidence 345678999985333333344555589999999999999875
No 13
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=23.97 E-value=50 Score=25.05 Aligned_cols=51 Identities=24% Similarity=0.327 Sum_probs=29.9
Q ss_pred cCCCCceEEEeccceeEEEeecccCcHHHHHHHHhhHHhcCCC-CCCCeeec--CcH
Q 036597 35 QANKGHFVVYSTDLRRFVIPLAYLHTNIFRELFEMSEEEFGLP-TDGPIILP--CNA 88 (139)
Q Consensus 35 ~vpkG~~~VYVge~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~-~~G~L~IP--C~~ 88 (139)
+.+.---++.|.|++-++ ++|-.+.-+..++.-|+||||. .+|.|.|- |++
T Consensus 47 dt~~v~A~llvSDgthsv---rclvTrEA~~~sdwEEk~Fgfr~~egrlllLqd~~V 100 (161)
T 2i46_A 47 DTSDVGATLLVSDGTHSV---RCLVTREALDTSDWEEKEFGFRGTEGRLLLLQDCGV 100 (161)
T ss_dssp CCTTSCEEEEEECSSCEE---EEEECHHHHHTSCCTTSCSSCTTCTTEEEEEEEEEE
T ss_pred CCCCceeEEEEcCCceEE---EEEecHHHhhhhhhhhhhcCcccccceEEEEecCCE
Confidence 444444556688864332 2333444445555567899997 58887763 654
No 14
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=22.69 E-value=19 Score=23.57 Aligned_cols=19 Identities=42% Similarity=0.613 Sum_probs=17.9
Q ss_pred cccCcHHHHHHHHhhHHhc
Q 036597 56 AYLHTNIFRELFEMSEEEF 74 (139)
Q Consensus 56 ~yL~hP~F~~LL~~aeeEf 74 (139)
.||+.-.|++++.++.+||
T Consensus 32 ~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 5999999999999999998
No 15
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=22.10 E-value=26 Score=24.23 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=18.6
Q ss_pred cccCcHHHHHHHHhhHHhcC
Q 036597 56 AYLHTNIFRELFEMSEEEFG 75 (139)
Q Consensus 56 ~yL~hP~F~~LL~~aeeEfG 75 (139)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999984
No 16
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=21.64 E-value=51 Score=18.26 Aligned_cols=13 Identities=38% Similarity=0.715 Sum_probs=10.6
Q ss_pred HHHHHHhhHHhcC
Q 036597 63 FRELFEMSEEEFG 75 (139)
Q Consensus 63 F~~LL~~aeeEfG 75 (139)
..+|.+..||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899997
No 17
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=21.40 E-value=65 Score=18.96 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=15.3
Q ss_pred HHHHHHHhhHHhcCCCCCCC
Q 036597 62 IFRELFEMSEEEFGLPTDGP 81 (139)
Q Consensus 62 ~F~~LL~~aeeEfG~~~~G~ 81 (139)
-..+|.+..||+||.....+
T Consensus 17 E~~eLvk~leekfGVsaaa~ 36 (40)
T 1dd4_C 17 ELAELVKKLEDKFGVTAAAP 36 (40)
T ss_dssp HHHHHHHHHHHHTCCCSCC-
T ss_pred HHHHHHHHHHHHHCCCcccc
Confidence 34689999999999986544
No 18
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=20.88 E-value=11 Score=27.43 Aligned_cols=13 Identities=15% Similarity=0.559 Sum_probs=10.5
Q ss_pred ccCcHHHHHHHHh
Q 036597 57 YLHTNIFRELFEM 69 (139)
Q Consensus 57 yL~hP~F~~LL~~ 69 (139)
|||||.|.-|-.-
T Consensus 29 YLNHPTFGLLyrV 41 (112)
T 3n5b_B 29 YINHPTWGLLYRI 41 (112)
T ss_dssp EEEETTTEEEEEE
T ss_pred hccCCccchheee
Confidence 9999999877543
No 19
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=20.78 E-value=24 Score=23.08 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=18.6
Q ss_pred cccCcHHHHHHHHhhHHhcC
Q 036597 56 AYLHTNIFRELFEMSEEEFG 75 (139)
Q Consensus 56 ~yL~hP~F~~LL~~aeeEfG 75 (139)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
Done!