BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036598
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 140 bits (352), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 113/198 (57%), Gaps = 21/198 (10%)
Query: 1 LYVCFGSLCEFAESQLLEIALGLESSNICFIWVIKSDAFL----LLDKDFEERVKDRGLI 56
+YV FGS QLLE A GL + F+W+I+ D + + +F + DRGLI
Sbjct: 298 VYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLI 357
Query: 57 IKGWAPQVLILNHPAVGGFMTHCGWNSVLESVSSGVPMITWPLFAEQFYNENFVLTHWKI 116
W PQ +LNHP++GGF+THCGWNS ES+ +GVPM+ WP FA+Q + F+ W+I
Sbjct: 358 -ASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEI 416
Query: 117 GVGVGVESGLAWGEEEKIGVLVRRDRVEKVVYQFMINGGEEVEGMRKRARKLSELAKIAV 176
G+ +I V+R+ + K++ + + G++ + M+++A +L + A+
Sbjct: 417 GM--------------EIDTNVKREELAKLINEVI--AGDKGKKMKQKAMELKKKAEENT 460
Query: 177 SKGGSSYVNVGLLIDDLL 194
GG SY+N+ +I D+L
Sbjct: 461 RPGGCSYMNLNKVIKDVL 478
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 133 bits (334), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 106/205 (51%), Gaps = 28/205 (13%)
Query: 1 LYVCFGSLCEFAESQLLEIALGLESSNICFIWVIKS----------------DAFLLLDK 44
LYV FGS QL E+ALGL S F+WVI+S D L
Sbjct: 271 LYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPP 330
Query: 45 DFEERVKDRGLIIKGWAPQVLILNHPAVGGFMTHCGWNSVLESVSSGVPMITWPLFAEQF 104
F ER K RG +I WAPQ +L HP+ GGF+THCGWNS LESV SG+P+I WPL+AEQ
Sbjct: 331 GFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQ- 389
Query: 105 YNENFVLTHWKIGVGVGVESGLAWGEEEKIGVLVRRDRVEKVVYQFMINGGEEVEGMRKR 164
N VL I + +G LVRR+ V +VV M GEE +G+R +
Sbjct: 390 -KMNAVLLSEDIRAALRPRAG--------DDGLVRREEVARVVKGLM--EGEEGKGVRNK 438
Query: 165 ARKLSELAKIAVSKGGSSYVNVGLL 189
++L E A + G+S + L+
Sbjct: 439 MKELKEAACRVLKDDGTSTKALSLV 463
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 122/195 (62%), Gaps = 14/195 (7%)
Query: 1 LYVCFGSL-CEFAESQLLEIALGLESSNICFIWVIKSDAFLLLDKDFE-ERVKDRGLIIK 58
+++CFGS+ F SQ+ EIALGL+ S + F+W ++ + + E ++ +G+I
Sbjct: 279 VFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMIC- 337
Query: 59 GWAPQVLILNHPAVGGFMTHCGWNSVLESVSSGVPMITWPLFAEQFYNENFVLTHWKIGV 118
GWAPQV +L H A+GGF++HCGWNS+LES+ GVP++TWP++AEQ N ++ W +G+
Sbjct: 338 GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGL 397
Query: 119 GVGVESGLAWGEEEKIGVLVRRDRVEKVVYQFMINGGEEVEGMRKRARKLSELAKIAVSK 178
G+ V+ K +V + +EK + M ++ + K+ +++ E+++ AV
Sbjct: 398 GLRVDY-------RKGSDVVAAEEIEKGLKDLM----DKDSIVHKKVQEMKEMSRNAVVD 446
Query: 179 GGSSYVNVGLLIDDL 193
GGSS ++VG LIDD+
Sbjct: 447 GGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 122/195 (62%), Gaps = 14/195 (7%)
Query: 1 LYVCFGSL-CEFAESQLLEIALGLESSNICFIWVIKSDAFLLLDKDFE-ERVKDRGLIIK 58
+++CFGS+ F SQ+ EIALGL+ S + F+W ++ + + E ++ +G+I
Sbjct: 279 VFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMIC- 337
Query: 59 GWAPQVLILNHPAVGGFMTHCGWNSVLESVSSGVPMITWPLFAEQFYNENFVLTHWKIGV 118
GWAPQV +L H A+GGF++HCGWNS+LES+ GVP++TWP++AEQ N ++ W +G+
Sbjct: 338 GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGL 397
Query: 119 GVGVESGLAWGEEEKIGVLVRRDRVEKVVYQFMINGGEEVEGMRKRARKLSELAKIAVSK 178
G+ V+ K +V + +EK + M ++ + K+ +++ E+++ AV
Sbjct: 398 GLRVDY-------RKGSDVVAAEEIEKGLKDLM----DKDSIVHKKVQEMKEMSRNAVVD 446
Query: 179 GGSSYVNVGLLIDDL 193
GGSS ++VG LIDD+
Sbjct: 447 GGSSLISVGKLIDDI 461
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 103/190 (54%), Gaps = 16/190 (8%)
Query: 1 LYVCFGSLCEFAESQLLEIALGLESSNICFIWVIKSDAFLLLDKDFEERVKDRGLIIKGW 60
+Y+ FGS+ +L +A LE FIW + D L K F ER K +G I+ W
Sbjct: 276 VYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIV-AW 334
Query: 61 APQVLILNHPAVGGFMTHCGWNSVLESVSSGVPMITWPLFAEQFYNENFVLTHWKIGVGV 120
APQV IL H +VG F+TH GWNSVLE + GVPMI+ P F +Q N +LT + +GV
Sbjct: 335 APQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNT--ILTESVLEIGV 392
Query: 121 GVESGLAWGEEEKIGVLVRRDRVEKVVYQFMINGGEEVEGMRKRARKLSELAKIAVSKGG 180
GV++G ++ ++ ++K + M E+ MR++ KL E A AV + G
Sbjct: 393 GVDNG-----------VLTKESIKKALELTM--SSEKGGIMRQKIVKLKESAFKAVEQNG 439
Query: 181 SSYVNVGLLI 190
+S ++ LI
Sbjct: 440 TSAMDFTTLI 449
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 24/195 (12%)
Query: 1 LYVCFGSLCEFAESQLLEIALGLESSNICFIWVIKSDAFLLLDKDFEERVKDRGLIIKGW 60
+Y+ FG++ ++++ ++ LE+S + FIW ++ A + L + F E+ + G+++ W
Sbjct: 274 VYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVP-W 332
Query: 61 APQVLILNHPAVGGFMTHCGWNSVLESVSSGVPMITWPLFAEQFYNENFVLTHWKIGV-- 118
APQ +L H AVG F+THCGWNS+ ESV+ GVP+I P F +Q N V +IGV
Sbjct: 333 APQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI 392
Query: 119 --GVGVESGLAWGEEEKIGVLVRRDRVEKVVYQFMINGGEEVEGMRKRARKLSELAKIAV 176
GV +SGL ++++ Q E+ + +R+ R L E A AV
Sbjct: 393 EGGVFTKSGLM-------------SCFDQILSQ------EKGKKLRENLRALRETADRAV 433
Query: 177 SKGGSSYVNVGLLID 191
GSS N L+D
Sbjct: 434 GPKGSSTENFITLVD 448
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 60 WAPQVLILNHPAVGGFMTHCGWNSVLESVSSGVPMITWPLFAEQFYN 106
W PQ +L HP F+TH G N + E++ G+P + PLFA+Q N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 57 IKGWAPQVLILNHPAVGGFMTHCGWNSVLESVSSGVPMITWPLFAEQFYNENFVLTHWKI 116
+ W PQ+ IL F+TH G S +E++S+ VPM+ P AEQ N ++ ++
Sbjct: 309 VHQWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV---EL 363
Query: 117 GVGVGVESGLAWGEEEKIGVLV 138
G+G + E+ + VL
Sbjct: 364 GLGRHIPRDQVTAEKLREAVLA 385
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 57 IKGWAPQVLILNHPAVGGFMTHCGWNSVLESVSSGVPMITWPLFAEQFYNENFVLTHWKI 116
+ W PQ+ IL + F+TH G E +++ PMI P +QF N + +
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ----- 339
Query: 117 GVGVGVESGLAWGEEEKIGVLVR 139
G+GV LA EE L+R
Sbjct: 340 --GLGVARKLA--TEEATADLLR 358
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 57 IKGWAPQVLILNHPAVGGFMTHCGWNSVLESVSSGVPMITWPLFAEQF 104
++ W PQ +L H V + H G + L ++ +GVP +++P + F
Sbjct: 296 LESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3F1J|A Chain A, Crystal Structure Of The Borna Disease Virus Matrix
Protein (Bdv-M) Reveals Rna Binding Properties
Length = 142
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 164 RARKLSELAKIAVSKGGSSYVNVGLLIDDLLNQKVERLSKKKETVDQF 211
R +KL++ I V G S VN+ IDD L + LS K+ + ++
Sbjct: 53 REKKLTDYFTIDVEPAGHSLVNIYFQIDDFLLLTLNSLSVYKDPIRKY 100
>pdb|1XR6|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase 3d From
Human Rhinovirus Serotype 1b
Length = 460
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 177 SKGGSSYVNVGLLIDDLLNQKVERLSKKKETVDQF 211
+ G YV +G+ DL+N K + +S+ KE +D++
Sbjct: 114 TSAGFPYVTMGIKKRDLINNKTKDISRLKEALDKY 148
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 60 WAPQVLILNHPAVGGFMTHCGWNSVLESVSSGVPMITWPLFAEQ 103
W P +L H +TH +VLE+ ++GVP++ P FA +
Sbjct: 288 WIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATE 329
>pdb|3HDP|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase-I From
Clostridium Acetobutylicum
Length = 133
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 138 VRRDRVEKVVYQFMINGGEEVE 159
V RD V KV QF+INGG VE
Sbjct: 36 VVRDEVRKVYIQFVINGGYRVE 57
>pdb|1XR7|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase 3d From
Human Rhinovirus Serotype 16
pdb|1XR7|B Chain B, Crystal Structure Of Rna-Dependent Rna Polymerase 3d From
Human Rhinovirus Serotype 16
Length = 460
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 177 SKGGSSYVNVGLLIDDLLNQKVERLSKKKETVDQF 211
+ G YV +G+ DL+N K + +SK K +D++
Sbjct: 114 TSAGYPYVTLGIKKKDLINNKTKDISKLKLALDKY 148
>pdb|2QH0|A Chain A, Crystal Structure Of A Glyoxalase From Clostridium
Acetobutylicum
Length = 138
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 138 VRRDRVEKVVYQFMINGGEEVE 159
V RD V KV QF+INGG VE
Sbjct: 33 VVRDEVRKVYIQFVINGGYRVE 54
>pdb|1TP7|A Chain A, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|B Chain B, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|C Chain C, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|D Chain D, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
Length = 460
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 177 SKGGSSYVNVGLLIDDLLNQKVERLSKKKETVDQF 211
+ G YV +G+ DL+N K + +SK K +D++
Sbjct: 114 TSAGYPYVTLGIKKKDLINNKTKDISKLKLALDKY 148
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 70 PAVGGFMTHCGWNSVLESVSSGVPMITWPLFAEQFYNENFVLTHWKIGVGV-----GVES 124
PA + H G + L +S GVP ++ P+ AE ++ +L GV V GVES
Sbjct: 299 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAE-VWDSARLLHAAGAGVEVPWEQAGVES 357
Query: 125 GLA 127
LA
Sbjct: 358 VLA 360
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 70 PAVGGFMTHCGWNSVLESVSSGVPMITWPLFAEQFYNENFVLTHWKIGVGV-----GVES 124
PA + H G + L +S GVP ++ P+ AE ++ +L GV V GVES
Sbjct: 298 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAE-VWDSARLLHAAGAGVEVPWEQAGVES 356
Query: 125 GLA 127
LA
Sbjct: 357 VLA 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,205,392
Number of Sequences: 62578
Number of extensions: 260797
Number of successful extensions: 637
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 25
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)