Query 036599
Match_columns 189
No_of_seqs 112 out of 1036
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:39:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.3 8.3E-12 1.8E-16 82.1 5.0 48 22-69 3-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.2 1.2E-11 2.6E-16 80.4 5.1 43 24-66 2-55 (55)
3 smart00353 HLH helix loop heli 99.2 1.2E-11 2.7E-16 79.5 4.8 42 29-70 2-52 (53)
4 cd04897 ACT_ACR_3 ACT domain-c 98.8 7.1E-08 1.5E-12 66.9 10.3 69 119-188 3-74 (75)
5 cd04895 ACT_ACR_1 ACT domain-c 98.6 4.6E-07 1E-11 62.3 9.5 47 119-165 3-49 (72)
6 cd04927 ACT_ACR-like_2 Second 98.6 4E-07 8.6E-12 63.0 9.2 67 118-186 1-71 (76)
7 cd04896 ACT_ACR-like_3 ACT dom 98.6 9.5E-07 2.1E-11 61.2 9.9 67 119-188 2-74 (75)
8 cd04925 ACT_ACR_2 ACT domain-c 98.5 2.3E-06 5E-11 58.7 10.6 69 119-187 2-73 (74)
9 cd04900 ACT_UUR-like_1 ACT dom 98.5 2.3E-06 4.9E-11 58.4 10.4 46 119-164 3-49 (73)
10 KOG1318 Helix loop helix trans 98.5 5.4E-07 1.2E-11 80.1 7.9 50 21-70 231-290 (411)
11 cd04928 ACT_TyrKc Uncharacteri 98.4 6.7E-06 1.4E-10 55.9 9.7 64 119-186 3-67 (68)
12 KOG1319 bHLHZip transcription 98.3 1.5E-06 3.3E-11 69.5 5.7 57 23-79 62-131 (229)
13 cd04899 ACT_ACR-UUR-like_2 C-t 98.2 3.4E-05 7.4E-10 51.4 9.8 48 119-166 2-49 (70)
14 cd04926 ACT_ACR_4 C-terminal 97.8 0.00049 1.1E-08 46.8 10.1 46 119-164 3-48 (72)
15 PF13740 ACT_6: ACT domain; PD 97.8 0.00035 7.7E-09 48.0 9.4 66 117-187 2-67 (76)
16 KOG4304 Transcriptional repres 97.8 3.5E-05 7.5E-10 65.0 4.9 54 19-72 28-95 (250)
17 PRK05007 PII uridylyl-transfer 97.8 0.00021 4.5E-09 69.9 10.9 81 105-187 795-879 (884)
18 PRK00275 glnD PII uridylyl-tra 97.8 0.00038 8.2E-09 68.2 12.4 82 105-187 801-886 (895)
19 PRK04374 PII uridylyl-transfer 97.7 0.00055 1.2E-08 66.9 12.2 82 105-188 783-868 (869)
20 cd04893 ACT_GcvR_1 ACT domains 97.7 0.00071 1.5E-08 46.6 9.5 64 118-186 2-65 (77)
21 PF01842 ACT: ACT domain; Int 97.6 0.001 2.2E-08 43.3 9.1 63 118-185 1-64 (66)
22 cd04873 ACT_UUR-ACR-like ACT d 97.6 0.002 4.3E-08 42.3 10.1 46 119-164 2-47 (70)
23 KOG3561 Aryl-hydrocarbon recep 97.5 8.7E-05 1.9E-09 71.1 4.6 46 23-68 20-75 (803)
24 PRK05092 PII uridylyl-transfer 97.5 0.0011 2.3E-08 65.3 12.2 81 106-187 831-915 (931)
25 PRK03059 PII uridylyl-transfer 97.5 0.00082 1.8E-08 65.6 10.8 80 106-186 774-854 (856)
26 PRK01759 glnD PII uridylyl-tra 97.5 0.00069 1.5E-08 66.1 10.3 80 105-186 770-853 (854)
27 PRK03381 PII uridylyl-transfer 97.4 0.0015 3.2E-08 63.2 11.6 72 115-188 597-668 (774)
28 KOG2483 Upstream transcription 97.4 0.00049 1.1E-08 57.4 6.9 61 19-79 55-124 (232)
29 PRK00194 hypothetical protein; 97.4 0.0015 3.2E-08 46.0 8.0 67 117-186 3-69 (90)
30 cd04872 ACT_1ZPV ACT domain pr 97.4 0.0013 2.9E-08 46.2 7.6 66 118-186 2-67 (88)
31 PRK03381 PII uridylyl-transfer 97.3 0.0016 3.5E-08 63.0 10.5 58 107-164 696-754 (774)
32 KOG3960 Myogenic helix-loop-he 97.3 0.00069 1.5E-08 56.7 6.4 56 24-79 119-182 (284)
33 TIGR01693 UTase_glnD [Protein- 97.3 0.0026 5.6E-08 62.0 11.0 72 115-188 666-742 (850)
34 PRK05007 PII uridylyl-transfer 97.2 0.0053 1.1E-07 60.2 12.5 80 106-187 689-773 (884)
35 PRK01759 glnD PII uridylyl-tra 97.2 0.0055 1.2E-07 59.9 12.4 81 105-187 664-749 (854)
36 cd04875 ACT_F4HF-DF N-terminal 97.2 0.0065 1.4E-07 41.1 9.2 66 119-187 1-68 (74)
37 PLN03217 transcription factor 97.2 0.0012 2.6E-08 46.4 5.5 47 36-82 20-78 (93)
38 TIGR01693 UTase_glnD [Protein- 97.1 0.0039 8.3E-08 60.9 10.7 80 105-186 766-849 (850)
39 KOG0561 bHLH transcription fac 97.1 0.00036 7.8E-09 59.8 3.0 49 27-75 64-120 (373)
40 cd04869 ACT_GcvR_2 ACT domains 97.1 0.0092 2E-07 40.7 9.6 63 120-186 2-70 (81)
41 PF13291 ACT_4: ACT domain; PD 97.0 0.018 3.9E-07 39.4 10.4 49 117-165 6-56 (80)
42 PRK00275 glnD PII uridylyl-tra 97.0 0.0054 1.2E-07 60.3 10.5 71 116-187 703-778 (895)
43 cd04870 ACT_PSP_1 CT domains f 97.0 0.01 2.2E-07 40.4 8.8 64 120-187 2-65 (75)
44 COG2844 GlnD UTP:GlnB (protein 97.0 0.0042 9E-08 59.8 8.9 78 104-184 777-855 (867)
45 PRK05092 PII uridylyl-transfer 96.9 0.012 2.6E-07 58.1 12.2 81 106-187 720-805 (931)
46 PRK03059 PII uridylyl-transfer 96.9 0.005 1.1E-07 60.2 9.4 73 115-188 676-751 (856)
47 PRK04374 PII uridylyl-transfer 96.9 0.0071 1.5E-07 59.3 10.3 73 115-188 688-761 (869)
48 cd04894 ACT_ACR-like_1 ACT dom 96.8 0.0094 2E-07 39.8 7.2 66 119-185 2-67 (69)
49 cd04887 ACT_MalLac-Enz ACT_Mal 96.5 0.029 6.2E-07 37.5 8.3 46 120-165 2-48 (74)
50 KOG4029 Transcription factor H 96.4 0.0057 1.2E-07 50.7 4.8 57 20-76 106-172 (228)
51 cd04886 ACT_ThrD-II-like C-ter 96.3 0.042 9.2E-07 35.7 8.0 45 120-164 1-50 (73)
52 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.2 0.06 1.3E-06 35.5 8.4 47 118-164 1-49 (79)
53 cd04880 ACT_AAAH-PDT-like ACT 96.2 0.061 1.3E-06 36.3 8.4 63 121-184 3-66 (75)
54 PRK06027 purU formyltetrahydro 95.8 0.1 2.3E-06 44.7 10.1 69 116-187 5-75 (286)
55 cd04888 ACT_PheB-BS C-terminal 95.7 0.076 1.7E-06 35.4 7.2 62 119-183 2-64 (76)
56 PRK13011 formyltetrahydrofolat 95.6 0.13 2.8E-06 44.2 9.9 67 117-187 7-75 (286)
57 PRK13010 purU formyltetrahydro 95.6 0.078 1.7E-06 45.6 8.5 69 117-187 9-79 (289)
58 PRK04435 hypothetical protein; 95.6 0.11 2.3E-06 40.3 8.5 67 114-183 66-133 (147)
59 cd02116 ACT ACT domains are co 95.4 0.15 3.2E-06 30.2 7.2 35 120-154 1-35 (60)
60 cd04876 ACT_RelA-SpoT ACT dom 95.4 0.26 5.6E-06 30.7 8.6 45 120-164 1-46 (71)
61 TIGR00655 PurU formyltetrahydr 95.4 0.17 3.7E-06 43.4 9.8 63 119-184 2-66 (280)
62 cd04874 ACT_Af1403 N-terminal 95.2 0.24 5.1E-06 32.1 8.1 36 119-154 2-37 (72)
63 PRK08577 hypothetical protein; 95.0 0.35 7.5E-06 36.7 9.6 66 116-184 55-122 (136)
64 KOG2588 Predicted DNA-binding 95.0 0.021 4.6E-07 55.6 3.4 59 21-79 274-339 (953)
65 cd04877 ACT_TyrR N-terminal AC 94.9 0.33 7.2E-06 32.6 8.3 43 119-164 2-44 (74)
66 cd04879 ACT_3PGDH-like ACT_3PG 94.6 0.26 5.6E-06 31.6 7.1 58 120-184 2-61 (71)
67 cd04905 ACT_CM-PDT C-terminal 94.6 0.55 1.2E-05 32.0 8.9 60 120-183 4-64 (80)
68 cd04931 ACT_PAH ACT domain of 94.3 0.62 1.3E-05 33.2 8.8 48 118-165 15-63 (90)
69 cd04889 ACT_PDH-BS-like C-term 94.2 0.27 5.9E-06 31.0 6.3 45 120-164 1-46 (56)
70 cd04903 ACT_LSD C-terminal ACT 94.1 0.39 8.4E-06 30.9 7.1 33 120-152 2-34 (71)
71 cd04878 ACT_AHAS N-terminal AC 94.1 0.93 2E-05 29.0 9.1 46 119-164 2-49 (72)
72 cd04883 ACT_AcuB C-terminal AC 94.1 0.85 1.9E-05 29.9 8.8 59 119-184 3-63 (72)
73 cd04904 ACT_AAAH ACT domain of 94.0 0.62 1.3E-05 31.5 8.1 45 122-166 5-50 (74)
74 cd04909 ACT_PDH-BS C-terminal 93.8 0.63 1.4E-05 30.5 7.7 35 119-153 3-37 (69)
75 cd04884 ACT_CBS C-terminal ACT 93.5 0.8 1.7E-05 30.4 7.9 34 120-153 2-35 (72)
76 PRK11589 gcvR glycine cleavage 93.5 0.29 6.2E-06 39.7 6.6 66 116-186 7-72 (190)
77 cd04882 ACT_Bt0572_2 C-termina 93.4 0.57 1.2E-05 29.9 6.9 56 120-184 2-59 (65)
78 PRK06737 acetolactate synthase 93.2 0.61 1.3E-05 32.3 7.0 65 118-185 3-67 (76)
79 cd04908 ACT_Bt0572_1 N-termina 93.2 1.2 2.7E-05 29.0 8.3 44 119-164 3-46 (66)
80 cd04929 ACT_TPH ACT domain of 92.9 1.5 3.3E-05 29.9 8.6 54 125-184 8-62 (74)
81 TIGR00119 acolac_sm acetolacta 92.8 0.77 1.7E-05 36.1 7.9 65 119-186 3-67 (157)
82 PRK13562 acetolactate synthase 92.8 0.54 1.2E-05 33.2 6.3 66 119-186 4-69 (84)
83 PF13710 ACT_5: ACT domain; PD 92.3 0.49 1.1E-05 31.3 5.3 58 126-186 1-58 (63)
84 PRK07334 threonine dehydratase 92.3 1.5 3.3E-05 39.1 10.1 48 117-164 326-378 (403)
85 CHL00100 ilvH acetohydroxyacid 92.2 1.2 2.7E-05 35.5 8.5 68 118-188 3-70 (174)
86 COG0788 PurU Formyltetrahydrof 92.0 1.3 2.7E-05 37.9 8.6 68 116-186 6-75 (287)
87 PRK11895 ilvH acetolactate syn 92.0 1.3 2.8E-05 35.0 8.2 64 118-186 3-68 (161)
88 COG3830 ACT domain-containing 91.7 0.44 9.5E-06 34.1 4.7 68 117-187 3-70 (90)
89 KOG3910 Helix loop helix trans 91.3 0.29 6.2E-06 45.0 4.3 51 22-72 525-585 (632)
90 cd04930 ACT_TH ACT domain of t 91.0 2.5 5.4E-05 31.4 8.5 48 119-166 43-91 (115)
91 PF05088 Bac_GDH: Bacterial NA 91.0 1.4 3.1E-05 45.8 9.4 71 116-188 488-563 (1528)
92 PRK00227 glnD PII uridylyl-tra 90.9 1.6 3.5E-05 42.1 9.2 67 118-187 547-614 (693)
93 cd04902 ACT_3PGDH-xct C-termin 90.4 1.3 2.8E-05 28.9 6.0 44 121-164 3-48 (73)
94 PRK11152 ilvM acetolactate syn 90.4 2.9 6.2E-05 28.9 7.8 65 118-186 4-68 (76)
95 COG2844 GlnD UTP:GlnB (protein 90.0 1.8 3.9E-05 42.3 8.6 50 115-164 682-732 (867)
96 KOG3559 Transcriptional regula 90.0 0.3 6.5E-06 44.0 3.2 36 29-64 7-52 (598)
97 KOG3558 Hypoxia-inducible fact 89.6 0.29 6.3E-06 46.6 3.0 40 24-63 47-96 (768)
98 cd04901 ACT_3PGDH C-terminal A 88.5 0.52 1.1E-05 30.6 2.9 44 121-164 3-46 (69)
99 cd04885 ACT_ThrD-I Tandem C-te 87.2 2.9 6.4E-05 27.5 6.0 59 121-184 2-61 (68)
100 COG4492 PheB ACT domain-contai 87.0 5 0.00011 30.9 7.6 67 115-184 70-137 (150)
101 PRK11899 prephenate dehydratas 86.8 6.9 0.00015 33.5 9.5 64 118-185 195-259 (279)
102 PRK11589 gcvR glycine cleavage 86.6 6.8 0.00015 31.7 8.8 67 118-186 96-166 (190)
103 PRK08178 acetolactate synthase 86.1 5.3 0.00012 28.9 7.1 67 116-186 7-73 (96)
104 PRK10872 relA (p)ppGpp synthet 85.1 8.6 0.00019 37.5 10.1 49 117-165 666-716 (743)
105 TIGR00691 spoT_relA (p)ppGpp s 84.9 8.4 0.00018 37.1 10.0 49 117-165 610-659 (683)
106 cd04922 ACT_AKi-HSDH-ThrA_2 AC 84.1 8.4 0.00018 24.4 7.9 59 119-186 3-64 (66)
107 KOG3560 Aryl-hydrocarbon recep 83.9 0.97 2.1E-05 42.2 3.0 32 32-63 34-75 (712)
108 PRK11092 bifunctional (p)ppGpp 83.7 10 0.00022 36.7 10.0 49 117-165 626-675 (702)
109 cd04916 ACT_AKiii-YclM-BS_2 AC 79.2 13 0.00029 23.4 7.8 52 126-186 13-64 (66)
110 KOG4447 Transcription factor T 78.8 2.6 5.6E-05 33.1 3.3 45 22-66 77-129 (173)
111 cd04937 ACT_AKi-DapG-BS_2 ACT 77.7 16 0.00035 23.5 7.6 21 126-146 13-33 (64)
112 PRK08198 threonine dehydratase 76.9 21 0.00047 31.7 9.2 65 115-183 325-394 (404)
113 TIGR01127 ilvA_1Cterm threonin 76.8 22 0.00047 31.3 9.1 66 115-184 303-373 (380)
114 PRK06382 threonine dehydratase 76.5 19 0.0004 32.3 8.7 66 115-184 328-398 (406)
115 PRK11898 prephenate dehydratas 76.4 21 0.00045 30.5 8.6 62 118-183 197-260 (283)
116 cd04932 ACT_AKiii-LysC-EC_1 AC 75.5 22 0.00048 24.0 8.7 55 125-187 12-66 (75)
117 cd04918 ACT_AK1-AT_2 ACT domai 74.0 21 0.00046 23.1 6.4 37 126-164 12-48 (65)
118 cd04892 ACT_AK-like_2 ACT doma 74.0 18 0.00038 22.2 7.5 44 119-164 2-48 (65)
119 cd04919 ACT_AK-Hom3_2 ACT doma 73.4 20 0.00044 22.7 8.0 37 126-164 13-49 (66)
120 cd04906 ACT_ThrD-I_1 First of 72.8 28 0.0006 23.9 8.2 61 118-183 2-63 (85)
121 PRK08526 threonine dehydratase 72.8 29 0.00063 31.2 9.0 65 115-183 324-393 (403)
122 cd04868 ACT_AK-like ACT domain 71.8 19 0.0004 21.5 6.0 36 127-164 13-48 (60)
123 PRK10622 pheA bifunctional cho 71.1 38 0.00081 30.4 9.2 60 122-185 302-362 (386)
124 COG4747 ACT domain-containing 70.3 19 0.00042 27.3 6.0 44 119-162 5-48 (142)
125 cd04924 ACT_AK-Arch_2 ACT doma 70.1 24 0.00052 22.1 7.9 52 126-186 13-64 (66)
126 COG0440 IlvH Acetolactate synt 68.8 20 0.00044 28.4 6.2 66 119-187 6-71 (163)
127 cd04921 ACT_AKi-HSDH-ThrA-like 68.4 30 0.00066 22.8 6.4 37 126-164 13-49 (80)
128 PF09849 DUF2076: Uncharacteri 68.4 10 0.00022 32.0 4.8 43 35-79 6-74 (247)
129 cd04890 ACT_AK-like_1 ACT doma 68.0 27 0.00059 21.9 7.3 35 126-164 12-46 (62)
130 cd04915 ACT_AK-Ectoine_2 ACT d 66.9 30 0.00064 22.6 5.9 36 127-164 14-49 (66)
131 COG0077 PheA Prephenate dehydr 66.7 57 0.0012 28.1 9.0 62 119-184 196-258 (279)
132 cd04933 ACT_AK1-AT_1 ACT domai 66.0 40 0.00087 23.1 7.7 42 119-164 3-47 (78)
133 cd04923 ACT_AK-LysC-DapG-like_ 64.1 31 0.00068 21.2 7.7 25 126-150 12-36 (63)
134 PLN02317 arogenate dehydratase 63.5 63 0.0014 29.1 9.0 34 123-156 289-322 (382)
135 PF13840 ACT_7: ACT domain ; P 61.7 13 0.00028 24.4 3.4 35 115-149 4-42 (65)
136 COG2716 GcvR Glycine cleavage 61.0 10 0.00022 30.3 3.2 64 116-184 4-67 (176)
137 PRK15385 magnesium transport p 60.8 92 0.002 26.0 9.0 39 116-154 141-181 (225)
138 TIGR01270 Trp_5_monoox tryptop 60.3 49 0.0011 30.5 7.9 48 118-165 32-81 (464)
139 KOG4571 Activating transcripti 60.0 7.6 0.00016 33.5 2.5 32 36-67 248-286 (294)
140 PF02120 Flg_hook: Flagellar h 58.2 48 0.001 22.3 5.9 47 106-153 27-79 (85)
141 PF02344 Myc-LZ: Myc leucine z 56.8 14 0.00029 21.3 2.3 18 30-47 12-29 (32)
142 PF14689 SPOB_a: Sensor_kinase 56.7 52 0.0011 21.4 5.8 43 28-73 13-57 (62)
143 KOG3898 Transcription factor N 56.0 8.1 0.00018 32.7 2.0 46 24-69 73-127 (254)
144 cd04936 ACT_AKii-LysC-BS-like_ 55.0 47 0.001 20.3 7.6 35 126-164 12-46 (63)
145 PF11619 P53_C: Transcription 54.9 19 0.00041 24.2 3.2 34 107-140 6-39 (71)
146 cd04912 ACT_AKiii-LysC-EC-like 54.8 60 0.0013 21.5 7.0 36 125-164 12-47 (75)
147 COG0317 SpoT Guanosine polypho 53.7 99 0.0021 30.1 9.0 48 117-164 627-675 (701)
148 COG3978 Acetolactate synthase 51.2 84 0.0018 22.1 7.5 62 118-185 4-67 (86)
149 TIGR01268 Phe4hydrox_tetr phen 51.2 96 0.0021 28.4 8.2 47 119-165 18-65 (436)
150 PRK08639 threonine dehydratase 50.0 1.3E+02 0.0029 26.9 9.0 66 115-184 334-401 (420)
151 PRK14637 hypothetical protein; 48.6 1.3E+02 0.0027 23.4 7.5 60 127-187 7-66 (151)
152 PRK00227 glnD PII uridylyl-tra 48.0 35 0.00076 33.1 5.1 60 118-187 632-691 (693)
153 TIGR02079 THD1 threonine dehyd 46.9 1.7E+02 0.0037 26.2 9.1 38 115-152 323-360 (409)
154 COG2061 ACT-domain-containing 46.3 1.1E+02 0.0024 24.2 6.7 47 118-164 6-55 (170)
155 PF00170 bZIP_1: bZIP transcri 45.4 27 0.00058 22.7 2.8 20 60-79 26-45 (64)
156 cd04935 ACT_AKiii-DAPDC_1 ACT 45.1 93 0.002 20.8 6.5 36 125-164 12-47 (75)
157 PF06005 DUF904: Protein of un 45.1 39 0.00085 23.0 3.7 25 55-79 13-37 (72)
158 PRK08818 prephenate dehydrogen 45.0 80 0.0017 28.2 6.6 44 118-164 298-342 (370)
159 COG2716 GcvR Glycine cleavage 44.5 86 0.0019 25.2 6.0 71 115-185 90-162 (176)
160 PF14992 TMCO5: TMCO5 family 44.0 31 0.00066 29.7 3.6 24 55-78 146-169 (280)
161 COG1707 ACT domain-containing 42.9 78 0.0017 25.5 5.5 46 119-164 4-51 (218)
162 cd04898 ACT_ACR-like_4 ACT dom 42.3 59 0.0013 22.5 4.2 35 123-157 6-42 (77)
163 PRK14646 hypothetical protein; 42.2 1.6E+02 0.0035 22.8 7.3 55 133-187 12-67 (155)
164 PRK14623 hypothetical protein; 41.0 1.4E+02 0.0031 21.8 6.8 24 55-78 3-26 (106)
165 PRK06349 homoserine dehydrogen 40.3 2E+02 0.0042 26.0 8.5 37 116-152 347-383 (426)
166 COG3074 Uncharacterized protei 40.2 51 0.0011 22.5 3.5 25 55-79 13-37 (79)
167 COG4710 Predicted DNA-binding 39.7 54 0.0012 22.6 3.6 30 37-66 15-47 (80)
168 PF05687 DUF822: Plant protein 39.4 50 0.0011 25.7 3.8 29 20-48 8-36 (150)
169 TIGR00656 asp_kin_monofn aspar 39.4 2.7E+02 0.0058 24.6 9.4 48 115-164 258-308 (401)
170 PRK14626 hypothetical protein; 38.9 1.6E+02 0.0034 21.7 6.8 25 55-79 7-31 (110)
171 PLN02551 aspartokinase 38.9 1.8E+02 0.0038 27.3 8.1 46 115-164 364-412 (521)
172 PRK14639 hypothetical protein; 38.8 1.3E+02 0.0029 22.9 6.2 53 134-187 3-55 (140)
173 PF04508 Pox_A_type_inc: Viral 38.6 42 0.00092 17.9 2.4 16 62-77 3-18 (23)
174 cd04913 ACT_AKii-LysC-BS-like_ 38.4 1E+02 0.0022 19.3 7.7 27 125-151 10-36 (75)
175 TIGR00103 DNA_YbaB_EbfC DNA-bi 37.9 1.5E+02 0.0033 21.3 6.7 24 55-78 7-30 (102)
176 PRK14645 hypothetical protein; 37.9 1.8E+02 0.0038 22.7 6.8 57 131-187 11-69 (154)
177 PRK06291 aspartate kinase; Pro 37.6 2.7E+02 0.0058 25.4 9.0 48 115-164 319-369 (465)
178 PRK15422 septal ring assembly 37.2 59 0.0013 22.7 3.5 25 55-79 13-37 (79)
179 PLN02705 beta-amylase 36.4 56 0.0012 31.3 4.4 29 20-48 81-109 (681)
180 PRK14625 hypothetical protein; 36.1 1.8E+02 0.0038 21.4 6.8 24 55-78 4-27 (109)
181 PRK08210 aspartate kinase I; R 35.8 2.7E+02 0.0058 24.7 8.6 61 115-186 337-400 (403)
182 PRK14627 hypothetical protein; 34.4 1.8E+02 0.0038 21.0 6.8 23 56-78 4-26 (100)
183 PF14197 Cep57_CLD_2: Centroso 34.0 1.3E+02 0.0027 20.3 4.8 42 37-78 20-65 (69)
184 PRK10820 DNA-binding transcrip 33.5 67 0.0015 29.8 4.5 37 119-155 2-38 (520)
185 PRK14624 hypothetical protein; 33.4 2E+02 0.0044 21.3 6.9 24 55-78 8-31 (115)
186 PRK14638 hypothetical protein; 32.9 2.2E+02 0.0047 22.0 6.6 51 136-187 16-67 (150)
187 PF12180 EABR: TSG101 and ALIX 32.5 51 0.0011 19.4 2.2 13 60-72 23-35 (35)
188 PRK14621 hypothetical protein; 32.3 2.1E+02 0.0045 21.1 6.7 24 55-78 6-29 (111)
189 cd04871 ACT_PSP_2 ACT domains 31.5 59 0.0013 22.3 3.0 61 121-186 3-73 (84)
190 cd04891 ACT_AK-LysC-DapG-like_ 31.1 1.2E+02 0.0026 18.0 4.9 28 125-152 9-36 (61)
191 cd04934 ACT_AK-Hom3_1 CT domai 31.1 1.6E+02 0.0035 19.6 7.6 34 127-164 14-47 (73)
192 PTZ00361 26 proteosome regulat 30.8 1E+02 0.0022 28.2 5.1 19 63-81 84-102 (438)
193 PRK14647 hypothetical protein; 30.3 2.6E+02 0.0057 21.7 6.8 52 135-187 15-66 (159)
194 PF10046 BLOC1_2: Biogenesis o 30.2 67 0.0015 22.9 3.1 23 55-77 61-83 (99)
195 PRK06291 aspartate kinase; Pro 30.1 4.3E+02 0.0093 24.1 9.1 48 115-164 396-446 (465)
196 KOG4447 Transcription factor T 29.9 43 0.00093 26.4 2.1 45 24-68 23-78 (173)
197 PRK09034 aspartate kinase; Rev 29.6 3.6E+02 0.0077 24.6 8.4 48 115-164 383-433 (454)
198 PRK12483 threonine dehydratase 29.3 4.8E+02 0.01 24.4 9.3 36 115-152 343-378 (521)
199 PRK14629 hypothetical protein; 29.2 2.2E+02 0.0048 20.5 6.5 22 57-78 7-28 (99)
200 TIGR01124 ilvA_2Cterm threonin 29.2 4.3E+02 0.0092 24.5 9.0 36 115-152 323-358 (499)
201 COG1076 DjlA DnaJ-domain-conta 28.7 53 0.0011 25.8 2.6 46 32-77 121-171 (174)
202 PRK14622 hypothetical protein; 28.6 2.3E+02 0.005 20.5 6.7 24 55-78 3-26 (103)
203 PF06345 Drf_DAD: DRF Autoregu 28.6 59 0.0013 15.2 1.7 12 129-140 1-12 (15)
204 PRK06635 aspartate kinase; Rev 28.1 4.2E+02 0.0091 23.4 9.6 50 115-164 260-311 (404)
205 KOG3501 Molecular chaperone Pr 28.1 78 0.0017 23.3 3.1 33 49-81 63-95 (114)
206 PRK07431 aspartate kinase; Pro 27.7 4.3E+02 0.0092 24.8 8.8 35 115-149 346-383 (587)
207 PLN02551 aspartokinase 27.7 4.7E+02 0.01 24.5 9.0 47 116-164 444-492 (521)
208 COG1259 Uncharacterized conser 27.6 2.6E+02 0.0057 21.8 6.2 40 125-164 55-95 (151)
209 PF04420 CHD5: CHD5-like prote 27.5 1.9E+02 0.004 22.5 5.5 50 26-80 37-86 (161)
210 COG0497 RecN ATPase involved i 27.1 1.2E+02 0.0027 28.7 5.0 45 32-76 296-341 (557)
211 PF10369 ALS_ss_C: Small subun 27.0 1.6E+02 0.0035 19.8 4.5 32 117-150 4-35 (75)
212 PF09006 Surfac_D-trimer: Lung 27.0 51 0.0011 20.6 1.7 20 62-81 1-20 (46)
213 KOG3896 Dynactin, subunit p62 26.8 78 0.0017 28.3 3.4 25 54-78 140-164 (449)
214 PF00601 Flu_NS2: Influenza no 26.7 1.1E+02 0.0024 21.9 3.6 50 25-75 27-85 (94)
215 KOG2663 Acetolactate synthase, 26.0 1.3E+02 0.0028 25.8 4.5 49 118-166 78-128 (309)
216 PRK00092 ribosome maturation p 26.0 3E+02 0.0066 21.0 6.5 52 135-187 14-65 (154)
217 PRK06635 aspartate kinase; Rev 25.8 3.9E+02 0.0085 23.5 7.9 35 115-149 338-375 (404)
218 PF05088 Bac_GDH: Bacterial NA 25.8 3.3E+02 0.0072 29.2 8.2 72 116-188 16-106 (1528)
219 PRK09224 threonine dehydratase 25.6 5.4E+02 0.012 23.8 9.4 36 115-152 326-361 (504)
220 COG0779 Uncharacterized protei 25.4 2.2E+02 0.0048 22.2 5.5 55 131-187 10-66 (153)
221 PRK10222 PTS system L-ascorbat 25.2 1.7E+02 0.0038 20.2 4.4 56 132-187 5-77 (85)
222 PF12998 ING: Inhibitor of gro 25.0 2.3E+02 0.005 19.6 5.2 40 30-69 58-98 (105)
223 PF10393 Matrilin_ccoil: Trime 24.4 1.3E+02 0.0029 18.7 3.3 25 56-80 19-43 (47)
224 KOG3582 Mlx interactors and re 23.9 45 0.00098 32.4 1.6 51 23-76 787-848 (856)
225 KOG4395 Transcription factor A 23.8 1.3E+02 0.0028 25.7 4.1 43 27-69 178-229 (285)
226 COG4747 ACT domain-containing 23.8 3.3E+02 0.0072 20.7 7.4 35 119-153 71-107 (142)
227 PRK03094 hypothetical protein; 23.7 1.4E+02 0.0031 20.8 3.7 21 129-149 8-28 (80)
228 PRK14640 hypothetical protein; 23.6 3.5E+02 0.0075 20.8 6.4 51 136-187 14-64 (152)
229 PF13887 MRF_C1: Myelin gene r 23.5 1E+02 0.0022 18.2 2.5 31 50-80 4-34 (36)
230 PRK10869 recombination and rep 23.4 1.5E+02 0.0032 27.9 4.9 44 32-75 295-339 (553)
231 TIGR00656 asp_kin_monofn aspar 23.2 5.2E+02 0.011 22.7 9.1 60 116-186 336-398 (401)
232 COG1710 Uncharacterized protei 22.9 1.1E+02 0.0023 23.3 3.1 28 122-149 55-84 (139)
233 TIGR01834 PHA_synth_III_E poly 22.8 1.3E+02 0.0028 26.5 4.1 37 45-81 280-317 (320)
234 PF02680 DUF211: Uncharacteriz 22.8 3E+02 0.0065 19.8 6.1 53 106-158 35-87 (95)
235 PF06305 DUF1049: Protein of u 22.8 85 0.0018 20.2 2.4 17 62-78 50-66 (68)
236 PRK11790 D-3-phosphoglycerate 22.6 2.1E+02 0.0046 25.7 5.6 62 116-184 337-398 (409)
237 PRK09436 thrA bifunctional asp 22.5 6.2E+02 0.014 25.0 9.2 48 115-164 394-444 (819)
238 PRK14636 hypothetical protein; 21.9 4.1E+02 0.0089 21.1 7.4 52 136-187 13-65 (176)
239 PRK14634 hypothetical protein; 21.9 3.8E+02 0.0083 20.7 6.4 51 137-187 16-67 (155)
240 KOG3582 Mlx interactors and re 21.7 20 0.00043 34.7 -1.2 59 21-79 649-718 (856)
241 PRK00153 hypothetical protein; 21.5 3.1E+02 0.0067 19.5 6.7 25 55-79 5-29 (104)
242 PF08644 SPT16: FACT complex s 21.4 1.4E+02 0.0029 23.4 3.6 35 45-79 67-104 (152)
243 PF15235 GRIN_C: G protein-reg 21.4 1E+02 0.0022 23.8 2.8 22 54-77 67-88 (137)
244 TIGR01269 Tyr_3_monoox tyrosin 21.3 4.2E+02 0.0092 24.5 7.1 62 119-184 41-106 (457)
245 smart00842 FtsA Cell division 21.3 4E+02 0.0086 20.7 6.6 51 134-186 52-108 (187)
246 PF07582 AP_endonuc_2_N: AP en 21.2 85 0.0018 20.2 2.0 28 39-66 3-44 (55)
247 PF14193 DUF4315: Domain of un 21.2 1.5E+02 0.0032 20.8 3.4 25 56-80 11-35 (83)
248 PF07716 bZIP_2: Basic region 21.1 1.3E+02 0.0028 18.8 2.8 9 40-48 12-20 (54)
249 COG3432 Predicted transcriptio 20.9 1.3E+02 0.0028 21.7 3.1 40 28-67 7-57 (95)
250 PRK03762 hypothetical protein; 20.9 3.4E+02 0.0073 19.7 6.7 23 56-78 8-30 (103)
251 PRK14630 hypothetical protein; 20.9 3.9E+02 0.0084 20.4 6.5 51 135-187 15-66 (143)
252 PRK14632 hypothetical protein; 20.9 4.2E+02 0.0091 20.9 6.4 49 137-187 17-65 (172)
253 PF03698 UPF0180: Uncharacteri 20.7 2.2E+02 0.0049 19.7 4.2 21 129-149 8-28 (80)
254 PRK08210 aspartate kinase I; R 20.6 3.9E+02 0.0085 23.6 6.9 37 115-151 269-306 (403)
255 PRK06835 DNA replication prote 20.4 1.1E+02 0.0023 26.8 3.1 47 33-79 26-84 (329)
256 PF07524 Bromo_TP: Bromodomain 20.3 70 0.0015 21.4 1.6 20 126-145 56-75 (77)
257 PF01709 Transcrip_reg: Transc 20.3 1.1E+02 0.0023 25.5 3.0 35 120-156 167-201 (234)
258 KOG2196 Nuclear porin [Nuclear 20.2 1.1E+02 0.0024 25.8 3.0 29 38-66 221-249 (254)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.26 E-value=8.3e-12 Score=82.05 Aligned_cols=48 Identities=33% Similarity=0.580 Sum_probs=44.8
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHhc---------ccccchHHHHHHHHHHHHHHH
Q 036599 22 VYKSKNLEAERRRRQKLNDRLLKLRSL---------MKKETVIEDAITYIRQLKGRV 69 (189)
Q Consensus 22 ~~~~~h~~~ER~RR~kln~~f~~LRsl---------~DKaSIl~dAI~YIk~Lq~kv 69 (189)
..+..|...||+||++||..|..|+++ +||++||..||+||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999 699999999999999999876
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.24 E-value=1.2e-11 Score=80.45 Aligned_cols=43 Identities=44% Similarity=0.770 Sum_probs=40.9
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhc-----------ccccchHHHHHHHHHHHH
Q 036599 24 KSKNLEAERRRRQKLNDRLLKLRSL-----------MKKETVIEDAITYIRQLK 66 (189)
Q Consensus 24 ~~~h~~~ER~RR~kln~~f~~LRsl-----------~DKaSIl~dAI~YIk~Lq 66 (189)
+..|+..||+||++||+.|..|+.+ +||++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999 789999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.24 E-value=1.2e-11 Score=79.54 Aligned_cols=42 Identities=40% Similarity=0.666 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc---------ccccchHHHHHHHHHHHHHHHH
Q 036599 29 EAERRRRQKLNDRLLKLRSL---------MKKETVIEDAITYIRQLKGRVL 70 (189)
Q Consensus 29 ~~ER~RR~kln~~f~~LRsl---------~DKaSIl~dAI~YIk~Lq~kv~ 70 (189)
..||+||++||+.|..|+++ +||++||.+||+||++|+.+++
T Consensus 2 ~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 2 ARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999 6899999999999999999875
No 4
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.82 E-value=7.1e-08 Score=66.88 Aligned_cols=69 Identities=9% Similarity=0.086 Sum_probs=58.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccC---HHHHHHHHHHHHhc
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIR---VEETRELLLKIIRG 188 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s---~~~lk~~L~~~i~~ 188 (189)
+|+|.|+++||+|.+|..+|-.+|++|.+|.|+|.++.+..+|.|.-. .|....+ .+.|+++|..+|.+
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~-~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK-DGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC-CCCccCCHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999833 3333333 35778888888764
No 5
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.63 E-value=4.6e-07 Score=62.33 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=45.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEe
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEG 165 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~ 165 (189)
.|+|.++++||+|.+|.++|..+||+|..|.|+|.++.+..+|.|.-
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d 49 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD 49 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC
Confidence 68999999999999999999999999999999999999999999983
No 6
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.62 E-value=4e-07 Score=63.01 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=53.1
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEeeeCCcccc---CHHHHHHHHHHHH
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT-LKGATLFSSVLEGTHGGDRII---RVEETRELLLKII 186 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~vk~~~~~~~~~---s~~~lk~~L~~~i 186 (189)
+.++|.|+++||+|.++..+|..+|++|..|.|++ .++.++.+|.|. ..++ ... ..+.|+++|.+++
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~-d~~~-~~~~~~~~~~l~~~L~~~L 71 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFIT-DARE-LLHTKKRREETYDYLRAVL 71 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEe-CCCC-CCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999997 899999999997 3222 222 2334556665554
No 7
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.58 E-value=9.5e-07 Score=61.23 Aligned_cols=67 Identities=7% Similarity=0.017 Sum_probs=56.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEeeeCCcccc-C---HHHHHHHHHHHHhc
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVT--TLKGATLFSSVLEGTHGGDRII-R---VEETRELLLKIIRG 188 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is--~~~~~~l~~~~vk~~~~~~~~~-s---~~~lk~~L~~~i~~ 188 (189)
.|.|.|.++||+|.+|.++|..+|++|..|.|+ |.++++..+|.+. ..+ . .+ + .+.|+++|..++.+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~-~~g-~-kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQ-SDG-K-KIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEe-CCC-C-ccCCHHHHHHHHHHHHHHhcC
Confidence 588999999999999999999999999999999 9999999999994 333 2 33 3 45788888877653
No 8
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.52 E-value=2.3e-06 Score=58.75 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=56.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccc---cCHHHHHHHHHHHHh
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRI---IRVEETRELLLKIIR 187 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~---~s~~~lk~~L~~~i~ 187 (189)
.|+|.++++||+|.+|..+|..+|++|..|.+++.++.++.+|.|.-..++... ...+.|+++|.+++.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 588999999999999999999999999999999999999999999732212222 234678888887765
No 9
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.51 E-value=2.3e-06 Score=58.45 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=43.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEE
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL-KGATLFSSVLE 164 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~vk 164 (189)
.|.|.|+++||+|.++..+|..+|++|..|.+.+. +|.++.+|.+.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~ 49 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVL 49 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEE
Confidence 57899999999999999999999999999999887 79999999998
No 10
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.46 E-value=5.4e-07 Score=80.12 Aligned_cols=50 Identities=34% Similarity=0.567 Sum_probs=45.6
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHhc----------ccccchHHHHHHHHHHHHHHHH
Q 036599 21 AVYKSKNLEAERRRRQKLNDRLLKLRSL----------MKKETVIEDAITYIRQLKGRVL 70 (189)
Q Consensus 21 ~~~~~~h~~~ER~RR~kln~~f~~LRsl----------~DKaSIl~dAI~YIk~Lq~kv~ 70 (189)
...+..|++.||+||++||+++..|-.| ..|.+||.-+.+||++||+..+
T Consensus 231 r~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 231 RRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 4457899999999999999999999999 4699999999999999998776
No 11
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.37 E-value=6.7e-06 Score=55.95 Aligned_cols=64 Identities=22% Similarity=0.254 Sum_probs=54.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT-LKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
.|-|.|+++||+|.++..+|..+||+|+.|++.+ .+|.++.+|.|....++ ....|.++|+.++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~----~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG----ETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc----chHHHHHHHHHhh
Confidence 5778899999999999999999999999999997 48899999999854443 4678888888765
No 12
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.28 E-value=1.5e-06 Score=69.50 Aligned_cols=57 Identities=21% Similarity=0.355 Sum_probs=51.4
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHhc-------------ccccchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 23 YKSKNLEAERRRRQKLNDRLLKLRSL-------------MKKETVIEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 23 ~~~~h~~~ER~RR~kln~~f~~LRsl-------------~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
.+..|..+||+||+.||.-|..|..| ..||-||..||+||..|..++..-+++...|
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L 131 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTL 131 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999 4688899999999999999998888887655
No 13
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.17 E-value=3.4e-05 Score=51.44 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=44.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGT 166 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~ 166 (189)
.|.|.|++++|+|.+|+.+|.+++++|.++++.+.++.++..|.+...
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~ 49 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA 49 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC
Confidence 578899999999999999999999999999999988888888999843
No 14
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=0.00049 Score=46.78 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=42.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.|.|.+++++|+|.+|..+|.+++++|+++.+.+.++..+.+|.+.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~ 48 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVT 48 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEE
Confidence 5677889999999999999999999999999999988888888887
No 15
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.79 E-value=0.00035 Score=47.97 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=54.2
Q ss_pred eEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 117 KLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 117 ~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
.+.|++.++++||++..+..+|.++|.++.+++.++.++.+...+.+.+. .-+.++|+.+|..+-+
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-----EDSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-----HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-----cccHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999777777732 2267889999887654
No 16
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.77 E-value=3.5e-05 Score=64.95 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=47.1
Q ss_pred cchhhhhhchHHHHHHHHHHHHHHHHHHhc--------------ccccchHHHHHHHHHHHHHHHHHH
Q 036599 19 DKAVYKSKNLEAERRRRQKLNDRLLKLRSL--------------MKKETVIEDAITYIRQLKGRVLFL 72 (189)
Q Consensus 19 ~~~~~~~~h~~~ER~RR~kln~~f~~LRsl--------------~DKaSIl~dAI~YIk~Lq~kv~~L 72 (189)
.....+..+-+-||+||.+||.-|..|+.| ++||=||.-|++|++.|+..-..-
T Consensus 28 ~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~ 95 (250)
T KOG4304|consen 28 TRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAA 95 (250)
T ss_pred hHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccc
Confidence 345567889999999999999999999999 689999999999999998765443
No 17
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.77 E-value=0.00021 Score=69.90 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=63.6
Q ss_pred CccEEEEEe-cCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccC---HHHHHH
Q 036599 105 EEDVKVTNM-GGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIR---VEETRE 180 (189)
Q Consensus 105 ~~~V~V~~~-~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s---~~~lk~ 180 (189)
++.|.+... .+.-..|+|.|.++||+|.+|.++|.++|++|.+|.|+|.++.+..+|.|. ... +..++ .+.|++
T Consensus 795 ~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~-~~~-g~~l~~~~~~~l~~ 872 (884)
T PRK05007 795 PTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILA-TAD-RRALNEELQQELRQ 872 (884)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEE-cCC-CCcCCHHHHHHHHH
Confidence 345665432 234468999999999999999999999999999999999999999999998 332 33555 356777
Q ss_pred HHHHHHh
Q 036599 181 LLLKIIR 187 (189)
Q Consensus 181 ~L~~~i~ 187 (189)
+|..++.
T Consensus 873 ~L~~~l~ 879 (884)
T PRK05007 873 RLTEALN 879 (884)
T ss_pred HHHHHHh
Confidence 7776653
No 18
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.75 E-value=0.00038 Score=68.21 Aligned_cols=82 Identities=9% Similarity=0.125 Sum_probs=64.1
Q ss_pred CccEEEEEe-cCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccC---HHHHHH
Q 036599 105 EEDVKVTNM-GGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIR---VEETRE 180 (189)
Q Consensus 105 ~~~V~V~~~-~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s---~~~lk~ 180 (189)
.+.|.+... .++-..|.|.+.++||+|.+|..+|..+||+|..|.|+|.++.++.+|.|. ...+....+ .+.|++
T Consensus 801 ~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~-d~~g~~l~~~~~~~~l~~ 879 (895)
T PRK00275 801 PTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFIT-DADNQPLSDPQLCSRLQD 879 (895)
T ss_pred CCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEE-CCCCCCCCCHHHHHHHHH
Confidence 345555543 234578999999999999999999999999999999999999999999998 322322223 356888
Q ss_pred HHHHHHh
Q 036599 181 LLLKIIR 187 (189)
Q Consensus 181 ~L~~~i~ 187 (189)
+|.+++.
T Consensus 880 ~L~~~L~ 886 (895)
T PRK00275 880 AICEQLD 886 (895)
T ss_pred HHHHHHh
Confidence 8888774
No 19
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.68 E-value=0.00055 Score=66.90 Aligned_cols=82 Identities=12% Similarity=0.201 Sum_probs=65.4
Q ss_pred CccEEEEEe-cCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccC---HHHHHH
Q 036599 105 EEDVKVTNM-GGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIR---VEETRE 180 (189)
Q Consensus 105 ~~~V~V~~~-~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s---~~~lk~ 180 (189)
++.|.+... .++-..|.|.+.++||+|.+|..+|.++|++|..|.|+|.++.++.+|.|. ...+. .++ .+.|++
T Consensus 783 ~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~-d~~g~-~~~~~~~~~l~~ 860 (869)
T PRK04374 783 APRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQIT-DEHDR-PLSESARQALRD 860 (869)
T ss_pred CCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEE-CCCCC-cCChHHHHHHHH
Confidence 456666553 234578999999999999999999999999999999999999999999998 32222 232 368888
Q ss_pred HHHHHHhc
Q 036599 181 LLLKIIRG 188 (189)
Q Consensus 181 ~L~~~i~~ 188 (189)
+|..++..
T Consensus 861 ~L~~~l~~ 868 (869)
T PRK04374 861 ALCACLDP 868 (869)
T ss_pred HHHHHhcc
Confidence 88887754
No 20
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.67 E-value=0.00071 Score=46.62 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=54.7
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
+.|.+.|+++||+...|.+.|.+.|..|..++....++.|+..+.+... ..+.+.|.+.|..+-
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~-----~~~~~~l~~~l~~~~ 65 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS-----WDAIAKLEAALPGLA 65 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec-----cccHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999998777777732 247888888887653
No 21
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.60 E-value=0.001 Score=43.29 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=47.2
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKG-ATLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
+.|.+.|+++||+|.+++.+|.++|++|.++.+....+ .....+... .. ....+.+.++|.++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIV-VD----EEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEE-EE----GHGHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEE-CC----CCCHHHHHHHHHcc
Confidence 36889999999999999999999999999999999877 222122222 11 34577777777665
No 22
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.55 E-value=0.002 Score=42.34 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=41.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.|.|.|++++|+|.+|+.+|.++++.|.++.+.+.++.....|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~ 47 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVT 47 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEE
Confidence 4778999999999999999999999999999999877766677777
No 23
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.55 E-value=8.7e-05 Score=71.12 Aligned_cols=46 Identities=28% Similarity=0.430 Sum_probs=43.5
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHhc----------ccccchHHHHHHHHHHHHHH
Q 036599 23 YKSKNLEAERRRRQKLNDRLLKLRSL----------MKKETVIEDAITYIRQLKGR 68 (189)
Q Consensus 23 ~~~~h~~~ER~RR~kln~~f~~LRsl----------~DKaSIl~dAI~YIk~Lq~k 68 (189)
.+..|..+||+||++||..+..|.+| +||.+||-.||.+|+.+++.
T Consensus 20 ~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 20 KRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 37899999999999999999999999 89999999999999999885
No 24
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.54 E-value=0.0011 Score=65.32 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=63.7
Q ss_pred ccEEEEEe-cCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccC---HHHHHHH
Q 036599 106 EDVKVTNM-GGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIR---VEETREL 181 (189)
Q Consensus 106 ~~V~V~~~-~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s---~~~lk~~ 181 (189)
+.|.+... .++...|.|.|.++||+|.+|..+|.++|++|..|.|+|.++.+..+|.|... .+....+ .+.|+++
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~ 909 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL-FGLKITNEARQAAIRRA 909 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHH
Confidence 45666543 23457899999999999999999999999999999999999999999999833 2222223 3578888
Q ss_pred HHHHHh
Q 036599 182 LLKIIR 187 (189)
Q Consensus 182 L~~~i~ 187 (189)
|..+|.
T Consensus 910 L~~~L~ 915 (931)
T PRK05092 910 LLAALA 915 (931)
T ss_pred HHHHhc
Confidence 888774
No 25
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.51 E-value=0.00082 Score=65.61 Aligned_cols=80 Identities=11% Similarity=0.112 Sum_probs=61.4
Q ss_pred ccEEEEEe-cCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 106 EDVKVTNM-GGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 106 ~~V~V~~~-~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
+.|.+... .++-..|.|.|+++||+|.+|..+|..+|++|..|.|+|.++.++.+|.|... .....-..+.|+++|.+
T Consensus 774 ~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~-~~~~~~~~~~l~~~L~~ 852 (856)
T PRK03059 774 PRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS-GLSDNRLQIQLETELLD 852 (856)
T ss_pred ceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC-CCCCHHHHHHHHHHHHH
Confidence 34555443 23457899999999999999999999999999999999999999999999521 11112234677777777
Q ss_pred HH
Q 036599 185 II 186 (189)
Q Consensus 185 ~i 186 (189)
+|
T Consensus 853 ~L 854 (856)
T PRK03059 853 AL 854 (856)
T ss_pred Hh
Confidence 65
No 26
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.50 E-value=0.00069 Score=66.09 Aligned_cols=80 Identities=11% Similarity=0.188 Sum_probs=62.4
Q ss_pred CccEEEEEe-cCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCH---HHHHH
Q 036599 105 EEDVKVTNM-GGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRV---EETRE 180 (189)
Q Consensus 105 ~~~V~V~~~-~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~---~~lk~ 180 (189)
++.|.+... .+.-..|.|.+.++||+|.+|.++|.++|++|..|.|+|.++.+..+|.|. ... +..++. +.|++
T Consensus 770 ~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~-~~~-g~~l~~~~~~~l~~ 847 (854)
T PRK01759 770 KTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILT-NQQ-GQALDEEERKALKS 847 (854)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEE-CCC-CCcCChHHHHHHHH
Confidence 345665442 233478999999999999999999999999999999999999999999998 322 234543 56777
Q ss_pred HHHHHH
Q 036599 181 LLLKII 186 (189)
Q Consensus 181 ~L~~~i 186 (189)
+|..+|
T Consensus 848 ~L~~~l 853 (854)
T PRK01759 848 RLLSNL 853 (854)
T ss_pred HHHHHh
Confidence 776654
No 27
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.45 E-value=0.0015 Score=63.19 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=60.8
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHhc
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIRG 188 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~~ 188 (189)
.+.+.|.|.|+++||+|.+|..+|..+|++|++|.+.+.+|.++.+|.|.... + .....+.|+++|.+++.+
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~-~-~~~~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRF-G-SPPDAALLRQDLRRALDG 668 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC-C-CcchHHHHHHHHHHHHcC
Confidence 35678999999999999999999999999999999999999999999998332 2 234468899999888753
No 28
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.42 E-value=0.00049 Score=57.35 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=51.3
Q ss_pred cchhhhhhchHHHHHHHHHHHHHHHHHHhc-------c--cccchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 19 DKAVYKSKNLEAERRRRQKLNDRLLKLRSL-------M--KKETVIEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 19 ~~~~~~~~h~~~ER~RR~kln~~f~~LRsl-------~--DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
.....+..|+.-||+||..|.+.|..|+-+ . +.++||.-|..||+.|+.+..+.+..++++
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l 124 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL 124 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 345667899999999999999999999999 2 257899999999999999887777666543
No 29
>PRK00194 hypothetical protein; Validated
Probab=97.37 E-value=0.0015 Score=45.97 Aligned_cols=67 Identities=19% Similarity=0.153 Sum_probs=54.3
Q ss_pred eEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 117 KLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 117 ~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
.+.|.+.|+++||++..+..+|.+.|++|.+.+..+.++.+.-.+.+... ....+.++|++.|..+-
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS---ESKKDFAELKEELEELG 69 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec---CCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999888877655666622 11356788888887654
No 30
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.35 E-value=0.0013 Score=46.15 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=54.4
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
+.|.+.|+++||++..|.+.|-++|++|.+++..+.++.+.-.+.+.. .....+.++|++.|..+-
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~---~~~~~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDI---SESNLDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEe---CCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999999999999998887765666662 112467889998887654
No 31
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.34 E-value=0.0016 Score=62.95 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=50.4
Q ss_pred cEEEEEe-cCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 107 DVKVTNM-GGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 107 ~V~V~~~-~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.|.+... +++-..|.|.|.++||+|.+|..+|..+|++|.+|.|+|.++.++.+|.|.
T Consensus 696 ~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~ 754 (774)
T PRK03381 696 RVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVT 754 (774)
T ss_pred EEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEE
Confidence 4444432 223588999999999999999999999999999999999999999999998
No 32
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.30 E-value=0.00069 Score=56.67 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=48.7
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhc--------ccccchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 24 KSKNLEAERRRRQKLNDRLLKLRSL--------MKKETVIEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 24 ~~~h~~~ER~RR~kln~~f~~LRsl--------~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
+..-.+.||+|=+|.|+-|-+|.-- ..|.-||-.||.||..||.=++++......+
T Consensus 119 RKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 119 RKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 3445678999999999999999766 7899999999999999999999998777654
No 33
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.26 E-value=0.0026 Score=62.03 Aligned_cols=72 Identities=22% Similarity=0.294 Sum_probs=58.4
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEeeeCCccccC----HHHHHHHHHHHHhc
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVT-TLKGATLFSSVLEGTHGGDRIIR----VEETRELLLKIIRG 188 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is-~~~~~~l~~~~vk~~~~~~~~~s----~~~lk~~L~~~i~~ 188 (189)
.+...|.|.++++||+|.+|..+|..+||+|..|.|+ +.+|.++.+|.|.... +. .++ .+.|+++|.+++.+
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~-g~-~~~~~~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF-GS-PPAAERVFQELLQGLVDVLAG 742 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC-CC-CCCcHHHHHHHHHHHHHHHcC
Confidence 3456899999999999999999999999999999999 6799999999998432 22 332 34577788777753
No 34
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.21 E-value=0.0053 Score=60.24 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=60.7
Q ss_pred ccEEEEEe-cCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeeeCCccccCH---HHHHH
Q 036599 106 EDVKVTNM-GGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL-KGATLFSSVLEGTHGGDRIIRV---EETRE 180 (189)
Q Consensus 106 ~~V~V~~~-~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~vk~~~~~~~~~s~---~~lk~ 180 (189)
+-|.+... ..+...|.|.|++++|+|..|..+|..+||+|..|.|.+. +|.++.+|.|... .+ ..++. +.|++
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g-~~~~~~~~~~I~~ 766 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DG-SPLSQDRHQVIRK 766 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CC-CCCCHHHHHHHHH
Confidence 44555432 2356789999999999999999999999999999999886 5599999999832 22 23443 34777
Q ss_pred HHHHHHh
Q 036599 181 LLLKIIR 187 (189)
Q Consensus 181 ~L~~~i~ 187 (189)
.|.+++.
T Consensus 767 ~L~~aL~ 773 (884)
T PRK05007 767 ALEQALT 773 (884)
T ss_pred HHHHHHc
Confidence 8877764
No 35
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.19 E-value=0.0055 Score=59.90 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=61.9
Q ss_pred CccEEEEEe-cCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEeeeCCccccCH---HHHH
Q 036599 105 EEDVKVTNM-GGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT-LKGATLFSSVLEGTHGGDRIIRV---EETR 179 (189)
Q Consensus 105 ~~~V~V~~~-~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~vk~~~~~~~~~s~---~~lk 179 (189)
.+.|.+... ..+...|.|.|+++||+|.+|..+|..+||+|..|.|.+ .+|.++.+|.|.-. . +..++. +.|+
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~-g~~~~~~~~~~l~ 741 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-N-GKLLEFDRRRQLE 741 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-C-CCCCCHHHHHHHH
Confidence 344555432 234578999999999999999999999999999999987 89999999999832 2 223343 3577
Q ss_pred HHHHHHHh
Q 036599 180 ELLLKIIR 187 (189)
Q Consensus 180 ~~L~~~i~ 187 (189)
++|.+++.
T Consensus 742 ~~L~~aL~ 749 (854)
T PRK01759 742 QALTKALN 749 (854)
T ss_pred HHHHHHHc
Confidence 77777764
No 36
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.16 E-value=0.0065 Score=41.08 Aligned_cols=66 Identities=8% Similarity=-0.059 Sum_probs=48.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT--LKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~--~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
.|.+.|+++||++.+|.+.|.++|+.+......+ .++.+ .+.+++. .+....+..+++++|..+-.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f--~~~~~~~-~~~~~~~~~~l~~~l~~l~~ 68 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRF--FMRVEFE-LEGFDLSREALEAAFAPVAA 68 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeE--EEEEEEE-eCCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999998886 33332 3333322 12113678999998887543
No 37
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.15 E-value=0.0012 Score=46.44 Aligned_cols=47 Identities=30% Similarity=0.473 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhc---------ccccc---hHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 036599 36 QKLNDRLLKLRSL---------MKKET---VIEDAITYIRQLKGRVLFLCDQVLQVEPL 82 (189)
Q Consensus 36 ~kln~~f~~LRsl---------~DKaS---Il~dAI~YIk~Lq~kv~~Le~~~~~l~~~ 82 (189)
+.||+..+.|++| .||+| +|.||-+||+.|+..|..|.+...++-+.
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999 46776 89999999999999999999999887543
No 38
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.13 E-value=0.0039 Score=60.85 Aligned_cols=80 Identities=11% Similarity=0.122 Sum_probs=61.8
Q ss_pred CccEEEEEec-CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccC---HHHHHH
Q 036599 105 EEDVKVTNMG-GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIR---VEETRE 180 (189)
Q Consensus 105 ~~~V~V~~~~-~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s---~~~lk~ 180 (189)
++.|.+.... ++-..|.|.|.++||+|.+|.++|.++|++|.++.|+|.++.....|.+.... +..++ .+.|++
T Consensus 766 ~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~--g~~~~~~~~~~l~~ 843 (850)
T TIGR01693 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLF--GLKLTDEEEQRLLE 843 (850)
T ss_pred CCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCC--CCCCCHHHHHHHHH
Confidence 3456665432 23578999999999999999999999999999999999999999999998322 22443 456777
Q ss_pred HHHHHH
Q 036599 181 LLLKII 186 (189)
Q Consensus 181 ~L~~~i 186 (189)
+|..++
T Consensus 844 ~L~~~l 849 (850)
T TIGR01693 844 VLAASV 849 (850)
T ss_pred HHHHHh
Confidence 776654
No 39
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.11 E-value=0.00036 Score=59.77 Aligned_cols=49 Identities=35% Similarity=0.512 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhc--------ccccchHHHHHHHHHHHHHHHHHHHhh
Q 036599 27 NLEAERRRRQKLNDRLLKLRSL--------MKKETVIEDAITYIRQLKGRVLFLCDQ 75 (189)
Q Consensus 27 h~~~ER~RR~kln~~f~~LRsl--------~DKaSIl~dAI~YIk~Lq~kv~~Le~~ 75 (189)
-+.-||+|=+-||.-|..||+| ..||.||+.+.+||.+|+...-+|-.+
T Consensus 64 ANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~q 120 (373)
T KOG0561|consen 64 ANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQ 120 (373)
T ss_pred hcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccccc
Confidence 3446999999999999999999 689999999999999999877665433
No 40
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.11 E-value=0.0092 Score=40.72 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=50.6
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC------CeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 120 INIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK------GATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 120 I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~------~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
|.+.|+++||++.+|.+.|.+.|++|.+.+..+.+ +.+.-.+.+.. . ...+...++..|..+-
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~---p-~~~~~~~l~~~l~~l~ 70 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLAL---P-AGTDLDALREELEELC 70 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEec---C-CCCCHHHHHHHHHHHH
Confidence 67999999999999999999999999999999987 55544455552 2 2467889998887654
No 41
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.01 E-value=0.018 Score=39.38 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=40.9
Q ss_pred eEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEe
Q 036599 117 KLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL--KGATLFSSVLEG 165 (189)
Q Consensus 117 ~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~vk~ 165 (189)
.+.|+|.|.+++|+|.+|..+|.+.++.|.++++... ++.+.-.|.+++
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V 56 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV 56 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE
Confidence 4678899999999999999999999999999999995 677776788884
No 42
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.01 E-value=0.0054 Score=60.27 Aligned_cols=71 Identities=27% Similarity=0.307 Sum_probs=56.5
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEeeeCCcccc----CHHHHHHHHHHHHh
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT-LKGATLFSSVLEGTHGGDRII----RVEETRELLLKIIR 187 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~vk~~~~~~~~~----s~~~lk~~L~~~i~ 187 (189)
+...|.|.|+++||+|.++..+|..+||+|..|.|.+ .+|.++.+|.|.... +.... -.+.|.++|.+++.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~-g~~~~~~~~r~~~i~~~L~~~L~ 778 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDD-GEPIGDNPARIEQIREGLTEALR 778 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCC-CCCccchHHHHHHHHHHHHHHHc
Confidence 5678999999999999999999999999999999855 688999999998332 22212 23457788887764
No 43
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.99 E-value=0.01 Score=40.41 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=52.6
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 120 INIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 120 I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
|.+.++++||+...+.++|.++|+++.+...++.++.+.-.+.+... ...+.++|+++|...-.
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p----~~~~~~~l~~~l~~l~~ 65 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP----DSADSEALLKDLLFKAH 65 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC----CCCCHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999998887555666521 13678999999887653
No 44
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0042 Score=59.77 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=61.2
Q ss_pred CCccEEEEEec-CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHH
Q 036599 104 IEEDVKVTNMG-GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELL 182 (189)
Q Consensus 104 ~~~~V~V~~~~-~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L 182 (189)
+.+.|.+.... .+...+++.+.++||+|..+..+|..++|++.+|.|+|++..+..+|.|.... +..+ ..++++.|
T Consensus 777 i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~--~~~l-~~~~~q~l 853 (867)
T COG2844 777 IPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDAD--GQAL-NAELRQSL 853 (867)
T ss_pred cCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccc--cccC-CHHHHHHH
Confidence 35677776542 23578999999999999999999999999999999999999999999998432 3355 33445554
Q ss_pred HH
Q 036599 183 LK 184 (189)
Q Consensus 183 ~~ 184 (189)
.+
T Consensus 854 ~~ 855 (867)
T COG2844 854 LQ 855 (867)
T ss_pred HH
Confidence 44
No 45
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.94 E-value=0.012 Score=58.11 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=61.0
Q ss_pred ccEEEEEe-cCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEeeeCCcc---ccCHHHHHH
Q 036599 106 EDVKVTNM-GGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT-LKGATLFSSVLEGTHGGDR---IIRVEETRE 180 (189)
Q Consensus 106 ~~V~V~~~-~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~vk~~~~~~~---~~s~~~lk~ 180 (189)
+.|.+... +.+...|.|.|++++|+|.+|..+|..+|++|..|.|++ .+|.++.+|.|.... +.. .-..+.|.+
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~-g~~~~~~~~~~~l~~ 798 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAF-GRDEDEPRRLARLAK 798 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCC-CCCCCCHHHHHHHHH
Confidence 44555442 235689999999999999999999999999999999988 688888889997322 211 123556777
Q ss_pred HHHHHHh
Q 036599 181 LLLKIIR 187 (189)
Q Consensus 181 ~L~~~i~ 187 (189)
+|.+++.
T Consensus 799 ~L~~~l~ 805 (931)
T PRK05092 799 AIEDALS 805 (931)
T ss_pred HHHHHHc
Confidence 7777763
No 46
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.93 E-value=0.005 Score=60.24 Aligned_cols=73 Identities=16% Similarity=0.159 Sum_probs=57.3
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEeeeCCcc--ccCHHHHHHHHHHHHhc
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT-LKGATLFSSVLEGTHGGDR--IIRVEETRELLLKIIRG 188 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~vk~~~~~~~--~~s~~~lk~~L~~~i~~ 188 (189)
.+...|.|.|+++||+|..+..+|..+||+|+.|.|.+ .+|.++.+|.|.. ..+.. .--.+.|++.|.+++.+
T Consensus 676 ~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~-~~~~~~~~~~~~~i~~~l~~~l~~ 751 (856)
T PRK03059 676 GEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD-PEEDVHYRDIINLVEHELAERLAE 751 (856)
T ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC-CCCCCChHHHHHHHHHHHHHHHcC
Confidence 35678999999999999999999999999999999955 6999999999983 22220 11245677777777643
No 47
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.91 E-value=0.0071 Score=59.27 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=58.6
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHhc
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT-LKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIRG 188 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~~ 188 (189)
.+...|.|.|++++|+|.+|..+|..+||+|+.|.|.+ .+|.++.+|.|... .+...-....|.+.|.+++.+
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~~~~~~~i~~~l~~~l~~ 761 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYADGDPQRLAAALRQVLAG 761 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCChHHHHHHHHHHHHHHcC
Confidence 35678999999999999999999999999999999998 69999999999832 222122355577888777754
No 48
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.83 E-value=0.0094 Score=39.83 Aligned_cols=66 Identities=14% Similarity=0.014 Sum_probs=54.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
.|.|.||++-|+-.++.+.+-++||.|....+++-+..-+-.|.|.. +..+..+.-+-||+.|..+
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~-~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVP-RPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEec-CCCCCcccHHHHHHHHHhc
Confidence 58999999999999999999999999999999998887766777763 2334456777888887754
No 49
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.52 E-value=0.029 Score=37.48 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=38.8
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEe
Q 036599 120 INIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK-GATLFSSVLEG 165 (189)
Q Consensus 120 I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~vk~ 165 (189)
|++.+.++||+|.+|+.+|.+.|..|.+.+..... +.....|.+++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev 48 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA 48 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc
Confidence 67888999999999999999999999999988764 56555677773
No 50
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.37 E-value=0.0057 Score=50.66 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=47.6
Q ss_pred chhhhhhchHHHHHHHHHHHHHHHHHHhc----------ccccchHHHHHHHHHHHHHHHHHHHhhh
Q 036599 20 KAVYKSKNLEAERRRRQKLNDRLLKLRSL----------MKKETVIEDAITYIRQLKGRVLFLCDQV 76 (189)
Q Consensus 20 ~~~~~~~h~~~ER~RR~kln~~f~~LRsl----------~DKaSIl~dAI~YIk~Lq~kv~~Le~~~ 76 (189)
...+...++..||+|=+-+|..|..||.+ ..|..+|.-||.||+.|+.-++.-+...
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 45556677778999999999999999999 3477799999999999998877665544
No 51
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.30 E-value=0.042 Score=35.71 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=35.3
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEE
Q 036599 120 INIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL-----KGATLFSSVLE 164 (189)
Q Consensus 120 I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~-----~~~~l~~~~vk 164 (189)
+.|.++++||.|.+|+.+|.+.|++|.+.+.... .+...-.+.++
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~ 50 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLE 50 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEE
Confidence 3578889999999999999999999999887764 24443345555
No 52
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.20 E-value=0.06 Score=35.53 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=37.3
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEE
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK--GATLFSSVLE 164 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~vk 164 (189)
++|.+.+.+++|.+.+++..|.+.+..+.+.+..... +...-.+.+.
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~ 49 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH 49 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc
Confidence 4789999999999999999999999999999877653 4443234444
No 53
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.17 E-value=0.061 Score=36.27 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=43.8
Q ss_pred EEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 121 NIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKG-ATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 121 ~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
-+..+++||.|.+++..|.+.|+.+.+....+..+ ..-+.|.++.. +.-.....+.+...|.+
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~-~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE-GHIDDPDVKEALEELKR 66 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE-CCCCCHHHHHHHHHHHH
Confidence 34456789999999999999999999998888765 55567777733 31113344445555544
No 54
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.80 E-value=0.1 Score=44.75 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=54.4
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT--LKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~--~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
..+.|.+.|+++||+...|.++|.++|++|.+.+.++ .+|.|.-.+.+... . ...+.++|+++|..+=+
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~-~--~~~~~~~L~~~L~~l~~ 75 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD-G--LIFNLETLRADFAALAE 75 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC-C--CCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999 88865444444421 1 13568899999887643
No 55
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.72 E-value=0.076 Score=35.43 Aligned_cols=62 Identities=10% Similarity=0.128 Sum_probs=43.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeeeCCccccCHHHHHHHHH
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL-KGATLFSSVLEGTHGGDRIIRVEETRELLL 183 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~ 183 (189)
.+.+.+++++|++.+|+.+|.+.+.+|...+.+.. ++.+--.|.++.. + .....+.|.++|.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~--~-~~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS--T-MNGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC--c-hHHHHHHHHHHHh
Confidence 57788899999999999999999999999987654 3544445667632 1 1124455555544
No 56
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=95.61 E-value=0.13 Score=44.17 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=51.8
Q ss_pred eEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 117 KLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT--LKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 117 ~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~--~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
.+.|.+.|+++||+...+.+.|-++|++|.+.+..+ .++.| .+.++.... ...+.++|+++|..+-.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F--~m~~~~~~p--~~~~~~~L~~~L~~l~~ 75 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRF--FMRVEFHSE--EGLDEDALRAGFAPIAA 75 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeE--EEEEEEecC--CCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999974 33443 344443212 24679999999987643
No 57
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.60 E-value=0.078 Score=45.65 Aligned_cols=69 Identities=7% Similarity=0.084 Sum_probs=51.1
Q ss_pred eEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 117 KLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVT--TLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 117 ~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is--~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
.+.|.+.|++++|+...|-+.|-+.|++|++++-. +..+.++-.+.+.... ...++.++|+++|..+-+
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~--~~~~~~~~l~~~l~~l~~ 79 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQS--AEAASVDTFRQEFQPVAE 79 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCC--CCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999985 3334433232233111 125789999999987643
No 58
>PRK04435 hypothetical protein; Provisional
Probab=95.56 E-value=0.11 Score=40.32 Aligned_cols=67 Identities=13% Similarity=0.248 Sum_probs=50.1
Q ss_pred cCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEeeeCCccccCHHHHHHHHH
Q 036599 114 GGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT-LKGATLFSSVLEGTHGGDRIIRVEETRELLL 183 (189)
Q Consensus 114 ~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~ 183 (189)
.+..+.|.+.+.+++|+|.+|+++|.+.+.+|...+.+. .+|...-+|.++.. +.....++|-++|.
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs---~~~~~L~~Li~~L~ 133 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS---SMEGDIDELLEKLR 133 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC---ChHHHHHHHHHHHH
Confidence 367899999999999999999999999999999998765 35655556777732 11234555555554
No 59
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.42 E-value=0.15 Score=30.18 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=31.2
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 036599 120 INIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK 154 (189)
Q Consensus 120 I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 154 (189)
|.+.|+..+|.+.+++.+|...++.+.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788889999999999999999999999987754
No 60
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.41 E-value=0.26 Score=30.71 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=35.8
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEE
Q 036599 120 INIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK-GATLFSSVLE 164 (189)
Q Consensus 120 I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~vk 164 (189)
|++.|.+++|.+..++.+|.+.++++.+..+...+ +.....+.++
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE 46 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence 46778899999999999999999999999887765 4443345555
No 61
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.40 E-value=0.17 Score=43.39 Aligned_cols=63 Identities=6% Similarity=-0.022 Sum_probs=50.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL--KGATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
.|.+.|++++|+...|-..|-+.|++|++++-+.. ++.|+-.+.+.. .+...+.++|+++|..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~---~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQL---EGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEe---CCCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999998884 466653444442 2224788999999887
No 62
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.20 E-value=0.24 Score=32.08 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=31.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK 154 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 154 (189)
.+.+.+++++|.+.+++..|.+.+..|.+.+....+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 467889999999999999999999999998887653
No 63
>PRK08577 hypothetical protein; Provisional
Probab=95.00 E-value=0.35 Score=36.71 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=48.3
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK--GATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
+.+.|.+.+.+++|+|.+|+++|.+.+.++.+.+..+.. +.+.-.+.+++. + ......++.+.|.+
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~-~--~~~~l~~l~~~L~~ 122 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLS-K--SDIDLEELEEELKK 122 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeC-C--chhhHHHHHHHHHc
Confidence 468899999999999999999999999999998877753 444335666632 1 11345666666653
No 64
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=94.98 E-value=0.021 Score=55.62 Aligned_cols=59 Identities=27% Similarity=0.431 Sum_probs=51.9
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHhc-------ccccchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 21 AVYKSKNLEAERRRRQKLNDRLLKLRSL-------MKKETVIEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 21 ~~~~~~h~~~ER~RR~kln~~f~~LRsl-------~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
...+..|+..|++=|--||+++..|+.+ +-|.+.+.-||+||++|+..-+.|......+
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l 339 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASL 339 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhh
Confidence 4568999999999999999999999999 6799999999999999998877776665543
No 65
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=94.86 E-value=0.33 Score=32.63 Aligned_cols=43 Identities=9% Similarity=0.174 Sum_probs=36.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.|+|.|.+++|++.+|+.+|.+.+..+.+.++.+. +. + .|.++
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~-i-~l~i~ 44 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR-I-YLNFP 44 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce-E-EEEeE
Confidence 47889999999999999999999999999999775 44 2 35555
No 66
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=94.65 E-value=0.26 Score=31.57 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=42.2
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 120 INIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK--GATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 120 I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
+.+.+++++|.+.+|+..|.+.++.|.+..+.... +.....|.+. + . ....+.+.|..
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~----~--~-~~~~l~~~l~~ 61 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD----S--P-VPEEVLEELKA 61 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC----C--C-CCHHHHHHHHc
Confidence 56778899999999999999999999999988754 5554445443 1 1 24566665543
No 67
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=94.59 E-value=0.55 Score=32.00 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=42.6
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeeeCCccccCHHHHHHHHH
Q 036599 120 INIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK-GATLFSSVLEGTHGGDRIIRVEETRELLL 183 (189)
Q Consensus 120 I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~vk~~~~~~~~~s~~~lk~~L~ 183 (189)
+.+..++++|.|.++++.|.++|+.+.+....+.. +...+.|.+... + ..+...+.++|.
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~-~---~~~~~~~~~~l~ 64 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE-G---HIEDPNVAEALE 64 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE-C---CCCCHHHHHHHH
Confidence 44555678999999999999999999999888763 355567777733 2 233445555443
No 68
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.27 E-value=0.62 Score=33.16 Aligned_cols=48 Identities=4% Similarity=0.119 Sum_probs=39.0
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEe
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK-GATLFSSVLEG 165 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~vk~ 165 (189)
.-|-+..++++|.|.++|..|...|+.+.+...-+.. ...-+.|.++.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi 63 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL 63 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 4555556788999999999999999999999999964 33456788884
No 69
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=94.18 E-value=0.27 Score=30.98 Aligned_cols=45 Identities=11% Similarity=0.313 Sum_probs=36.3
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEE
Q 036599 120 INIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK-GATLFSSVLE 164 (189)
Q Consensus 120 I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~vk 164 (189)
|.+.++++||.+.+++..|.+.|..|....+...+ +..+..|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 35678899999999999999999999988887765 5555455555
No 70
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.12 E-value=0.39 Score=30.85 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=29.9
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 036599 120 INIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT 152 (189)
Q Consensus 120 I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~ 152 (189)
+.+.+++++|.+.+++..|.+.++++.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 567888999999999999999999999888766
No 71
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=94.12 E-value=0.93 Score=29.01 Aligned_cols=46 Identities=15% Similarity=0.328 Sum_probs=36.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEE
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL--KGATLFSSVLE 164 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~vk 164 (189)
.+.+.+.+++|.+.+|+..|.+.+..+...+.... ++.....|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 46778889999999999999999999999988764 34443345554
No 72
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.10 E-value=0.85 Score=29.89 Aligned_cols=59 Identities=10% Similarity=0.109 Sum_probs=41.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL--KGATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
.|.+..+++||.|.+++..|.+.|+.+.+...... .+.....|.+.. . +.+++.++|..
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~---~----~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT---M----NPRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec---C----CHHHHHHHHHH
Confidence 56778889999999999999999999998865543 234333444441 1 23466666653
No 73
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=94.00 E-value=0.62 Score=31.54 Aligned_cols=45 Identities=4% Similarity=0.189 Sum_probs=36.9
Q ss_pred EEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEee
Q 036599 122 IIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKG-ATLFSSVLEGT 166 (189)
Q Consensus 122 i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~vk~~ 166 (189)
+..+++||.|.++|..|...|+.+++...-+..+ ..-+.|.++..
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~ 50 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE 50 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE
Confidence 3446789999999999999999999999999755 34567888843
No 74
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.84 E-value=0.63 Score=30.46 Aligned_cols=35 Identities=6% Similarity=0.231 Sum_probs=31.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL 153 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~ 153 (189)
-+.+.++++||.|.++++.|.+.|+++........
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 46778899999999999999999999998876665
No 75
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.50 E-value=0.8 Score=30.39 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=29.3
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 036599 120 INIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL 153 (189)
Q Consensus 120 I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~ 153 (189)
+.+.-+++||.|.++++.|.+.|..|++......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 4556678999999999999999999999877664
No 76
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=93.48 E-value=0.29 Score=39.68 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=53.4
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
..+.|++.++++||++..|.++|.++|..+..++.+..+|.|--.+.+. +. ..+...|+.+|...-
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~--~~~~~~le~~L~~l~ 72 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GS--WNAITLIESTLPLKG 72 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CC--hhHHHHHHHHHHhhh
Confidence 4578999999999999999999999999999999999999874444443 22 347788888876543
No 77
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.41 E-value=0.57 Score=29.92 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=38.6
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 120 INIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK--GATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 120 I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
|.+.-+++||.|.+++..|.+.|+.|.+...+... +... +.+... + .+.+.+.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~--v~~~ve--~-----~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKAL--LIFRTE--D-----IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEE--EEEEeC--C-----HHHHHHHHHH
Confidence 45666789999999999999999999888765543 3332 334411 1 5566666653
No 78
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=93.21 E-value=0.61 Score=32.28 Aligned_cols=65 Identities=6% Similarity=0.055 Sum_probs=45.8
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
..|.+.-.++||+|.++...|.--|+.|.+.++...++.-++-+++-+. ++ .-..+.|..-|.+.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~~--~~~i~qi~kQL~KL 67 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-CT--ENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-CC--HHHHHHHHHHHhCC
Confidence 3577778899999999999999999999999999876554445555422 33 23344555555443
No 79
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=93.16 E-value=1.2 Score=29.02 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=35.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.|.|..+++||.|.+++.+|.+.|+.|.+.-+...++. ..+.+.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 46677889999999999999999999999988776663 345555
No 80
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.85 E-value=1.5 Score=29.88 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=40.4
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 125 GKKRGNFTKLVEAMNALGFVFGDTSVTTL-KGATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 125 ~~~~g~l~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
++++|.|.++|..|+..|+.+.+...-+. +...-|.|.++.. +. .+.++++|..
T Consensus 8 ~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e-~~-----~~~i~~~l~~ 62 (74)
T cd04929 8 KNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE-CD-----QRRLDELVQL 62 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE-cC-----HHHHHHHHHH
Confidence 67899999999999999999999999996 3445567888843 32 1255555543
No 81
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=92.82 E-value=0.77 Score=36.09 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=46.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
.|.+.-+++||.|.+|...|...|+.+.+..+...++.-.+.+++.+. ++ .-..+.|..-|.+.+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~-~d--~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV-GD--DKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE-CC--HHHHHHHHHHHhcCc
Confidence 567777899999999999999999999999999876332333444422 22 345677777776654
No 82
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=92.79 E-value=0.54 Score=33.22 Aligned_cols=66 Identities=9% Similarity=0.067 Sum_probs=49.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
.|.+.-.++||+|.++...|...|+.+.+.+++...+.-++-+++-+..++ .-..+.|..-|.+.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d--~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD--DTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC--HHHHHHHHHHHhCCc
Confidence 567777899999999999999999999999999987766666666632133 344556666665544
No 83
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=92.29 E-value=0.49 Score=31.27 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=39.2
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 126 KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 126 ~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
++||+|.+|+..|.--|+.|.+.+++..++.-++.+++.+. ++ .-.++.|..-|.+.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~-~~--~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS-GD--DREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE-S---CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe-eC--chhHHHHHHHHhccC
Confidence 36999999999999999999999999944333334444422 22 345666777776654
No 84
>PRK07334 threonine dehydratase; Provisional
Probab=92.26 E-value=1.5 Score=39.12 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=40.5
Q ss_pred eEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEE
Q 036599 117 KLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL-----KGATLFSSVLE 164 (189)
Q Consensus 117 ~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~-----~~~~l~~~~vk 164 (189)
.+.|.|.+.+++|+|.+|+.+|.+.+++|.++++... ++...-.|+++
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~ 378 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE 378 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE
Confidence 4889999999999999999999999999999998764 45554456666
No 85
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=92.22 E-value=1.2 Score=35.52 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=49.8
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHhc
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIRG 188 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~~ 188 (189)
..|.+.-.++||+|.+|...|...|++|.+.++....+.-+..+++- ..+++ .. .+.|...|.+.+.-
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIv-v~~~~-~~-ieqL~kQL~KLidV 70 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMV-VPGDD-RT-IEQLTKQLYKLVNI 70 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEE-EECCH-HH-HHHHHHHHHHHhHh
Confidence 35777788999999999999999999999999987433333344444 22332 22 78999999887753
No 86
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=92.00 E-value=1.3 Score=37.94 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=52.1
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT--LKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~--~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
..+.+.++|++++|+...|-..|.+.|..|++++-.+ ..++||--..+. .++...+.+.+.+++..+-
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~---~~~~~~~~~~l~~~f~~~a 75 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFE---GEGGPLDREALRAAFAPLA 75 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEe---cCCCcccHHHHHHHHHHHH
Confidence 4578999999999999999999999999999998775 245555444444 2223478888888887643
No 87
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=91.96 E-value=1.3 Score=34.98 Aligned_cols=64 Identities=16% Similarity=0.300 Sum_probs=45.4
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK--GATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
..|.+.-+++||.|.+|...|...|+.+.+..+.... +...-++++. ++ .-..+.|..-|.+.+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~---~~--~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS---GD--EQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE---CC--HHHHHHHHHHHhccc
Confidence 3567777899999999999999999999999988875 3333344444 22 334556665555544
No 88
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=91.66 E-value=0.44 Score=34.08 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=54.0
Q ss_pred eEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 117 KLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 117 ~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
-+.|+|.-.+++|+...+..+|-++|.++.+.+=+..+|+|--.+.+. . +....+...+++.|....+
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~-~--~~~~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD-I--SKEVVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc-C--ChHhccHHHHHHHHHHHHH
Confidence 367888888999999999999999999999999999999884445555 2 2236778888887776554
No 89
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=91.33 E-value=0.29 Score=45.00 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=43.7
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHhc----------ccccchHHHHHHHHHHHHHHHHHH
Q 036599 22 VYKSKNLEAERRRRQKLNDRLLKLRSL----------MKKETVIEDAITYIRQLKGRVLFL 72 (189)
Q Consensus 22 ~~~~~h~~~ER~RR~kln~~f~~LRsl----------~DKaSIl~dAI~YIk~Lq~kv~~L 72 (189)
..+..++..||-|=..||+-|..|--+ -.|.-||-.|+.-|-.|++||.|-
T Consensus 525 ERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 525 ERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 345678888999989999999999777 458889999999999999999763
No 90
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.00 E-value=2.5 Score=31.42 Aligned_cols=48 Identities=0% Similarity=0.045 Sum_probs=37.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEee
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKG-ATLFSSVLEGT 166 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~vk~~ 166 (189)
-+-+..++++|.|.++|..|...|+.+++...-+..+ ..-|.|.|...
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdie 91 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCE 91 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEE
Confidence 3444447789999999999999999999999999733 34457777743
No 91
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=90.95 E-value=1.4 Score=45.83 Aligned_cols=71 Identities=13% Similarity=0.205 Sum_probs=56.3
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-----CeEEEEEEEEeeeCCccccCHHHHHHHHHHHHhc
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK-----GATLFSSVLEGTHGGDRIIRVEETRELLLKIIRG 188 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~-----~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~~ 188 (189)
+.+.++|.....+..|++++-.|+++||.|+...-..+. ..++|.|.+... ++...+...+++.|..++..
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~--~~~~~~~~~~~~~~~~a~~~ 563 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP--DGDALDLDDIRERFEEAFEA 563 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC--CCccccHHHHHHHHHHHHHH
Confidence 468999999889999999999999999999998766543 367888999843 22357788888888776653
No 92
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=90.94 E-value=1.6 Score=42.08 Aligned_cols=67 Identities=9% Similarity=0.068 Sum_probs=56.3
Q ss_pred EEEEEEe-CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 118 LRINIIF-GKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 118 v~I~i~c-~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
..+.|.. ++++|.++++..+|--.|+.|.+|++.+ +|.....|.|....| ...++..+.|.+...+.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGP--QDFDPQEFLQAYKSGVY 614 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCC--CCCChHHHHHHHHHhhc
Confidence 4566665 9999999999999999999999999999 888888899985433 47788999998887654
No 93
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=90.42 E-value=1.3 Score=28.92 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=34.0
Q ss_pred EEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEE
Q 036599 121 NIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT--LKGATLFSSVLE 164 (189)
Q Consensus 121 ~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~--~~~~~l~~~~vk 164 (189)
-+..++++|.+.++.+.|.+.|+.+.+..++. .++.....|.+.
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 45678899999999999999999998887665 345654445544
No 94
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=90.36 E-value=2.9 Score=28.87 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=47.1
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
..+.+.-.++||+|.+++..+.--|+.|.+.++....+.-+..+++-+. + .-..+.|..-|.+.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~--~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S--ERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C--CchHHHHHHHHhcCc
Confidence 3566777789999999999999999999999999965544445555421 2 445666666666543
No 95
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=1.8 Score=42.29 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=45.6
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEE
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT-LKGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~vk 164 (189)
.+...|-|.|+++|.+|+.+..++...|++|+.|+|.+ .+|..+.+|.|.
T Consensus 682 ~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~ 732 (867)
T COG2844 682 SGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVL 732 (867)
T ss_pred CCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEe
Confidence 35578999999999999999999999999999999988 578899999887
No 96
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=89.95 E-value=0.3 Score=43.98 Aligned_cols=36 Identities=31% Similarity=0.526 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhc----------ccccchHHHHHHHHHH
Q 036599 29 EAERRRRQKLNDRLLKLRSL----------MKKETVIEDAITYIRQ 64 (189)
Q Consensus 29 ~~ER~RR~kln~~f~~LRsl----------~DKaSIl~dAI~YIk~ 64 (189)
-+-|+||++-|.-|+.|-.+ .||+||+-=|-.|||-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 46799999999999999988 7999999999999984
No 97
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=89.63 E-value=0.29 Score=46.60 Aligned_cols=40 Identities=35% Similarity=0.616 Sum_probs=35.8
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhc----------ccccchHHHHHHHHH
Q 036599 24 KSKNLEAERRRRQKLNDRLLKLRSL----------MKKETVIEDAITYIR 63 (189)
Q Consensus 24 ~~~h~~~ER~RR~kln~~f~~LRsl----------~DKaSIl~dAI~YIk 63 (189)
+.+-..+-|-||-|-|+-|+.|..+ .|||||+-=||.|.+
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 4555668899999999999999998 899999999999986
No 98
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=88.51 E-value=0.52 Score=30.61 Aligned_cols=44 Identities=7% Similarity=-0.000 Sum_probs=33.3
Q ss_pred EEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 121 NIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 121 ~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
-+.+.+++|++.+++..|.+.+..+...+....++...-.|.++
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~ 46 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID 46 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence 45678899999999999999999997776655445554444444
No 99
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.21 E-value=2.9 Score=27.48 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=38.0
Q ss_pred EEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 121 NIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK-GATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 121 ~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
.+.-+.+||.|.++++.|.+ |.+|+..+-...+ +...-.+.++.. + .-...+|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~--~--~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP--D--REDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC--C--HHHHHHHHHHHHH
Confidence 45667899999999999999 9999988776643 111113444521 1 2345556665543
No 100
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=86.98 E-value=5 Score=30.91 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=53.1
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT-LKGATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
+..+.+.+.-+++.|.|+++|.++...++.|.+.+=+. .+|+.--++.+... +...+++.|..+|.+
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s---sm~~~V~~ii~kl~k 137 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS---SMEKDVDKIIEKLRK 137 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch---hhhhhHHHHHHHHhc
Confidence 45678888899999999999999999999999987665 78887666777632 345678888777764
No 101
>PRK11899 prephenate dehydratase; Provisional
Probab=86.84 E-value=6.9 Score=33.52 Aligned_cols=64 Identities=8% Similarity=-0.056 Sum_probs=46.3
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK-GATLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
..|-+..+++||.|.++|.+|...|+.++...+-+.. +.+-|.|.++.. + ......++++|..+
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~e-g---~~~d~~v~~aL~~l 259 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIE-G---HPEDRNVALALEEL 259 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEE-C---CCCCHHHHHHHHHH
Confidence 3444445789999999999999999999999999974 456677888843 3 22334456665543
No 102
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=86.61 E-value=6.8 Score=31.68 Aligned_cols=67 Identities=1% Similarity=0.015 Sum_probs=49.9
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC----CeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK----GATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~----~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
+.|.+.-.++||++..+.++|-+.|++|.+.+.-+.+ +.-++.+.+++.-. ......+|+++|..+=
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP--~~~~~~~L~~~l~~l~ 166 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP--ASQDAANIEQAFKALC 166 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC--CCCCHHHHHHHHHHHH
Confidence 7788888999999999999999999999999888865 32233444442211 2456888888887654
No 103
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=86.13 E-value=5.3 Score=28.90 Aligned_cols=67 Identities=9% Similarity=0.092 Sum_probs=50.0
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
+...|.+.-.+.||+|.+|...|..-|..|.+.++...++.-++-+++- .. + .-..+.|..-|.+.+
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtiv-v~-~--~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLL-VN-D--DQRLEQMISQIEKLE 73 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEE-Ec-C--chHHHHHHHHHhCCc
Confidence 4467888888999999999999999999999999998877666666665 32 2 235566666555543
No 104
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=85.08 E-value=8.6 Score=37.46 Aligned_cols=49 Identities=6% Similarity=0.049 Sum_probs=40.9
Q ss_pred eEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEe
Q 036599 117 KLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL--KGATLFSSVLEG 165 (189)
Q Consensus 117 ~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~vk~ 165 (189)
.+.|.|.+.+++|+|.+|..+|.+.++.|.++++... ++.+.-.|++++
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV 716 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI 716 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE
Confidence 3578899999999999999999999999999999775 455544677774
No 105
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=84.92 E-value=8.4 Score=37.10 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=41.4
Q ss_pred eEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEe
Q 036599 117 KLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL-KGATLFSSVLEG 165 (189)
Q Consensus 117 ~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~vk~ 165 (189)
.+.|.|.+.+++|+|.+|+.+|-+.+..|.++++... ++.+.-.|.+++
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV 659 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI 659 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE
Confidence 4678999999999999999999999999999999876 355544577773
No 106
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=84.11 E-value=8.4 Score=24.38 Aligned_cols=59 Identities=7% Similarity=0.050 Sum_probs=36.7
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 119 RINIIFG---KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 119 ~I~i~c~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
.|.+.+. ..++.+.+++++|.+.|+.|.-...+..+..+ +|.+. . -+.....++|++.+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~i--s~~v~-~------~~~~~~~~~lh~~~ 64 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNI--SAVID-E------DDATKALRAVHERF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEE--EEEEe-H------HHHHHHHHHHHHHH
Confidence 3455542 45899999999999999999776554433222 55665 1 11344455555544
No 107
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=83.94 E-value=0.97 Score=42.16 Aligned_cols=32 Identities=38% Similarity=0.659 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhc----------ccccchHHHHHHHHH
Q 036599 32 RRRRQKLNDRLLKLRSL----------MKKETVIEDAITYIR 63 (189)
Q Consensus 32 R~RR~kln~~f~~LRsl----------~DKaSIl~dAI~YIk 63 (189)
++-|++||.-+..|-|| .||.|||-=++.|+.
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 45689999999999999 899999999999975
No 108
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=83.71 E-value=10 Score=36.71 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=40.8
Q ss_pred eEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEe
Q 036599 117 KLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK-GATLFSSVLEG 165 (189)
Q Consensus 117 ~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~vk~ 165 (189)
.+.|.|.+.+++|+|.+|..+|.+.++.|.++++...+ +.+.-.|.+++
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV 675 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA 675 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE
Confidence 45789999999999999999999999999999987765 44444577774
No 109
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.23 E-value=13 Score=23.41 Aligned_cols=52 Identities=6% Similarity=0.007 Sum_probs=33.8
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 126 KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 126 ~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
..++.+.+++.+|.+.+++|.-...+..+..+ +|.+. . -+.....++|++.+
T Consensus 13 ~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~i--sf~v~-~------~d~~~~~~~lh~~~ 64 (66)
T cd04916 13 NTVGVSARATAALAKAGINIRMINQGSSEISI--MIGVH-N------EDADKAVKAIYEEF 64 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcccEE--EEEEe-H------HHHHHHHHHHHHHH
Confidence 46899999999999999999766554423222 45665 1 12455566666554
No 110
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=78.83 E-value=2.6 Score=33.11 Aligned_cols=45 Identities=29% Similarity=0.322 Sum_probs=36.5
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHhc-----ccccc---hHHHHHHHHHHHH
Q 036599 22 VYKSKNLEAERRRRQKLNDRLLKLRSL-----MKKET---VIEDAITYIRQLK 66 (189)
Q Consensus 22 ~~~~~h~~~ER~RR~kln~~f~~LRsl-----~DKaS---Il~dAI~YIk~Lq 66 (189)
.+..-|+..||+|=.-||+-|.+||-+ .||-| -|.-|--||.-|=
T Consensus 77 ~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~ 129 (173)
T KOG4447|consen 77 KQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLY 129 (173)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhh
Confidence 345689999999999999999999999 67777 3566777776654
No 111
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=77.65 E-value=16 Score=23.48 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=19.4
Q ss_pred CCCChHHHHHHHHHhCCCeEE
Q 036599 126 KKRGNFTKLVEAMNALGFVFG 146 (189)
Q Consensus 126 ~~~g~l~~il~aLe~l~L~V~ 146 (189)
..+|++.+++.+|.+.++.|.
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEE
Confidence 469999999999999999996
No 112
>PRK08198 threonine dehydratase; Provisional
Probab=76.94 E-value=21 Score=31.68 Aligned_cols=65 Identities=25% Similarity=0.344 Sum_probs=45.7
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEeeeCCccccCHHHHHHHHH
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL-----KGATLFSSVLEGTHGGDRIIRVEETRELLL 183 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~-----~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~ 183 (189)
+..+.+.|.-+++||.|.++++.|-+.|.+|...+.... .+..--.+.++ . .+ .-..++|.+.|.
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie-~-~~--~~~~~~l~~~L~ 394 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLE-T-RG--PEHIEEILDALR 394 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEE-e-CC--HHHHHHHHHHHH
Confidence 556788899999999999999999999999998887653 23443345555 2 11 124555666554
No 113
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=76.81 E-value=22 Score=31.34 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=45.5
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL-----KGATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~-----~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
+..+.+.|.-+++||.|.++++.+.+.+.+|++...... .+...-.+.++ .. + .-..++|.++|.+
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~ve-t~-~--~~~~~~i~~~L~~ 373 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLE-TR-G--KEHLDEILKILRD 373 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEE-eC-C--HHHHHHHHHHHHH
Confidence 456788899999999999999999999999998876521 23333345555 21 1 2334566666643
No 114
>PRK06382 threonine dehydratase; Provisional
Probab=76.55 E-value=19 Score=32.27 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=44.8
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEE----ee-CCeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVT----TL-KGATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is----~~-~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
+..+.+.|.-+++||.|.++++.|.+.+.+|++.... .. .+...-+|.++.. + .-..+.|.+.|.+
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~--~--~~~~~~v~~~L~~ 398 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR--G--QDHLDRILNALRE 398 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC--C--HHHHHHHHHHHHH
Confidence 4457788888999999999999999999999988764 22 2333335666621 1 1223466666643
No 115
>PRK11898 prephenate dehydratase; Provisional
Probab=76.38 E-value=21 Score=30.52 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=43.4
Q ss_pred EEEEEEeCCC-CChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEeeeCCccccCHHHHHHHHH
Q 036599 118 LRINIIFGKK-RGNFTKLVEAMNALGFVFGDTSVTTLKG-ATLFSSVLEGTHGGDRIIRVEETRELLL 183 (189)
Q Consensus 118 v~I~i~c~~~-~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~vk~~~~~~~~~s~~~lk~~L~ 183 (189)
..+-+..++. +|.|.++|..|...|+.+++..+-+..+ .+-+.|.++.. +. .+...++++|.
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~e-g~---~~~~~~~~al~ 260 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVE-GH---IDDVLVAEALK 260 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEE-cc---CCCHHHHHHHH
Confidence 4455566554 9999999999999999999999999644 34467777743 32 33334555544
No 116
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.54 E-value=22 Score=24.02 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=34.7
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 125 GKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 125 ~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
+..+|.+.+|+.+|...|+.|-.... ..+.+ +|++... + ....+.++++|.+-++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~--s~~~i--Sftv~~~--d--~~~~~~~~~~l~~~l~ 66 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITT--SEISV--ALTLDNT--G--STSDQLLTQALLKELS 66 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEee--cCCEE--EEEEecc--c--cchhHHHHHHHHHHHH
Confidence 45699999999999999999888754 22332 6666621 1 2222445555554443
No 117
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.03 E-value=21 Score=23.07 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=29.1
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 126 KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 126 ~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
+.+|++.+++.+|.+.|+.|.-...++.+-.+ +|.+.
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~si--s~~v~ 48 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNI--SLIVN 48 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceE--EEEEe
Confidence 34789999999999999999877766665554 56665
No 118
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=74.01 E-value=18 Score=22.16 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=30.3
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 119 RINIIFG---KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 119 ~I~i~c~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.|++.+. ..++.+.+++.+|.+.++.+.....+. ++ .-.+|.+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~-~~-~~i~~~v~ 48 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS-SE-VNISFVVD 48 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC-Cc-eeEEEEEe
Confidence 3555443 458999999999999999998776654 22 21245555
No 119
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.41 E-value=20 Score=22.65 Aligned_cols=37 Identities=11% Similarity=0.032 Sum_probs=27.2
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 126 KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 126 ~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
..+|.+.+++++|.+.|++|.-...+..+..+ .|.+.
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~i--sf~v~ 49 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASEINI--SCVID 49 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCccceE--EEEEe
Confidence 45899999999999999999766655533222 45555
No 120
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.84 E-value=28 Score=23.90 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=36.8
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeeeCCccccCHHHHHHHHH
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK-GATLFSSVLEGTHGGDRIIRVEETRELLL 183 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~vk~~~~~~~~~s~~~lk~~L~ 183 (189)
.++.+.-+++||.|.+++.+|- +.+|........+ +...-.+.++.. ++ .-..+.+.++|.
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-~~--~~~~~~i~~~L~ 63 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-NG--AEELAELLEDLK 63 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-Cc--HHHHHHHHHHHH
Confidence 4678888899999999999998 6666655554432 222224555521 10 223445555554
No 121
>PRK08526 threonine dehydratase; Provisional
Probab=72.80 E-value=29 Score=31.15 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=46.5
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe-----EEEEEEEEeeeCCccccCHHHHHHHHH
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGA-----TLFSSVLEGTHGGDRIIRVEETRELLL 183 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~-----~l~~~~vk~~~~~~~~~s~~~lk~~L~ 183 (189)
+..+.+.+.-+++||.|.+++..+-+.+.+|+...-...+.. +.-.+.++ .. + .-..+.|.++|.
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e-~~-~--~~~~~~~~~~l~ 393 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLE-TK-G--KEHQEEIRKILT 393 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEE-eC-C--HHHHHHHHHHHH
Confidence 557889999999999999999999999999999888664333 33345556 21 2 334555555554
No 122
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=71.76 E-value=19 Score=21.49 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=26.0
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 127 KRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 127 ~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.+|.+.+++++|.+.++.+.-...+..+..+ +|.+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~~--s~~v~ 48 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSESEVNI--SFTVD 48 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCCCcEEE--EEEEe
Confidence 5799999999999999999777655432222 45555
No 123
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=71.09 E-value=38 Score=30.39 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=43.8
Q ss_pred EEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 122 IIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGA-TLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 122 i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~-~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
+.-+++||.|.++|..|...|+..+...+-+..+. +-|.|.+... | ......+.++|..+
T Consensus 302 ~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e-g---~~~d~~~~~aL~~l 362 (386)
T PRK10622 302 MATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ-A---NLRSAEMQKALKEL 362 (386)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe-C---CCCCHHHHHHHHHH
Confidence 33368999999999999999999999999986554 5667888843 3 23334456665543
No 124
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=70.30 E-value=19 Score=27.29 Aligned_cols=44 Identities=11% Similarity=0.283 Sum_probs=37.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEE
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSV 162 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~ 162 (189)
.|++..+++||-|.+++.+|.+.|+.+.-.++.-.+++=+--+.
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmv 48 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMV 48 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEE
Confidence 57888899999999999999999999998888887777543333
No 125
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.14 E-value=24 Score=22.10 Aligned_cols=52 Identities=12% Similarity=-0.068 Sum_probs=33.2
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 126 KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 126 ~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
..++.+.+++++|.+.++.|.-...+..+..+ +|.+.. -+.+.+.+.|++.+
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~i--sf~i~~-------~~~~~~~~~Lh~~~ 64 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGSSEYNI--SFVVAE-------DDGWAAVKAVHDEF 64 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceE--EEEEeH-------HHHHHHHHHHHHHh
Confidence 45899999999999999998766554433222 466651 12445555555543
No 126
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=68.80 E-value=20 Score=28.37 Aligned_cols=66 Identities=14% Similarity=0.217 Sum_probs=49.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
.+.+.-.+.||.|..+...|-..|+.+-+..+...++--+.-+++- ..++ .-..++|..-|++++.
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTiv-v~g~--~~~~EQi~kQL~kLid 71 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIV-VSGD--EQVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEE-EcCC--cchHHHHHHHHHhhcc
Confidence 4555556889999999999999999999999988766555555555 3232 4557778777777664
No 127
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=68.37 E-value=30 Score=22.80 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=27.0
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 126 KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 126 ~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
..++.+.+++++|.+.++.+.-.+.+..+.. .+|.+.
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~--isf~v~ 49 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQASSEHS--ISFVVD 49 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCcce--EEEEEe
Confidence 4589999999999999999977765533322 245665
No 128
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=68.35 E-value=10 Score=32.00 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhc--------------------------ccccchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 35 RQKLNDRLLKLRSL--------------------------MKKETVIEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 35 R~kln~~f~~LRsl--------------------------~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
|+-|.+.|..|+.. |-.+-||.|+. ||.|+.+|++||.++.+.
T Consensus 6 ~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~A--L~~a~~ri~eLe~ql~q~ 74 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQA--LKQAQARIQELEAQLQQA 74 (247)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 45688888888887 44555666643 789999999999998653
No 129
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=67.98 E-value=27 Score=21.92 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=26.3
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 126 KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 126 ~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
..+|.+.+|+++|+..|+.|..... ..+.+ +|.+.
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t--~~~~i--s~~v~ 46 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT--SENSV--TLYLD 46 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec--CCCEE--EEEEe
Confidence 4589999999999999999998854 22332 55665
No 130
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=66.86 E-value=30 Score=22.57 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=27.7
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 127 KRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 127 ~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.+|++.+++++|.+.|++|.....+..+-.+ ++.+.
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~i--s~~V~ 49 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRNVDV--QFVVD 49 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCeeEE--EEEEE
Confidence 5789999999999999999877766654443 45555
No 131
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=66.72 E-value=57 Score=28.11 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=45.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKG-ATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
.|-+.-+++||.|.++|..|...|++.....+-+..+ ..-+.|.+... + ...-..++++|..
T Consensus 196 sl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e-g---~~~~~~v~~AL~e 258 (279)
T COG0077 196 SLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE-G---HIDDPLVKEALEE 258 (279)
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe-c---CcCcHhHHHHHHH
Confidence 3334445899999999999999999999999999764 44566888743 3 2333566666654
No 132
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.05 E-value=40 Score=23.10 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=29.9
Q ss_pred EEEEEe---CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 119 RINIIF---GKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 119 ~I~i~c---~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
+|+|.+ +..+|.+.+|+++|...|+.|-.... ..+.+ +|.+.
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~sI--SftV~ 47 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEVSI--SLTLD 47 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCCEE--EEEEE
Confidence 444443 34589999999999999999888854 22332 66666
No 133
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.07 E-value=31 Score=21.20 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.5
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEE
Q 036599 126 KKRGNFTKLVEAMNALGFVFGDTSV 150 (189)
Q Consensus 126 ~~~g~l~~il~aLe~l~L~V~~a~i 150 (189)
..++.+.+++.+|.+.++.|.-.+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEc
Confidence 3589999999999999999977764
No 134
>PLN02317 arogenate dehydratase
Probab=63.49 E-value=63 Score=29.09 Aligned_cols=34 Identities=6% Similarity=0.030 Sum_probs=29.4
Q ss_pred EeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe
Q 036599 123 IFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGA 156 (189)
Q Consensus 123 ~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~ 156 (189)
.-++++|.|.++|.+|...++.++....-+..+.
T Consensus 289 sl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~ 322 (382)
T PLN02317 289 SLEEGPGVLFKALAVFALRDINLTKIESRPQRKR 322 (382)
T ss_pred EcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCC
Confidence 3367899999999999999999999999886444
No 135
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=61.69 E-value=13 Score=24.37 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=27.7
Q ss_pred CceEEEEEEeC----CCCChHHHHHHHHHhCCCeEEEEE
Q 036599 115 GNKLRINIIFG----KKRGNFTKLVEAMNALGFVFGDTS 149 (189)
Q Consensus 115 ~~~v~I~i~c~----~~~g~l~~il~aLe~l~L~V~~a~ 149 (189)
++-..|+|.++ ..+|++.+++.+|.+.|+.|....
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 34456777776 368999999999999999998877
No 136
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=61.02 E-value=10 Score=30.33 Aligned_cols=64 Identities=16% Similarity=0.109 Sum_probs=50.5
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
.-+.|+..-.++||+...|.++.-+.|-.++.+.++.+++.+--++.+.+. --.+..|+++|..
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs-----~dav~~le~~l~~ 67 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS-----WDAVTLLEATLPL 67 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC-----HHHHHHHHHHhhc
Confidence 347888888999999999999999999999999999999998444444422 2346677777653
No 137
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=60.79 E-value=92 Score=25.97 Aligned_cols=39 Identities=5% Similarity=0.083 Sum_probs=32.5
Q ss_pred ceEEEEEEeCCCCC--hHHHHHHHHHhCCCeEEEEEEEeeC
Q 036599 116 NKLRINIIFGKKRG--NFTKLVEAMNALGFVFGDTSVTTLK 154 (189)
Q Consensus 116 ~~v~I~i~c~~~~g--~l~~il~aLe~l~L~V~~a~is~~~ 154 (189)
..+.+.+.|...++ +...+++.|++.++.+.+.++....
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~ 181 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQ 181 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecC
Confidence 45788999987654 5888999999999999999997653
No 138
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=60.31 E-value=49 Score=30.53 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=37.4
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeE-E-EEEEEEe
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGAT-L-FSSVLEG 165 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~-l-~~~~vk~ 165 (189)
.-|-++.++++|.|.++|+.|+..|+.+++...-+..+.. - +.|.|..
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 3444444678999999999999999999999999975443 3 4677774
No 139
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=60.01 E-value=7.6 Score=33.53 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhc-------ccccchHHHHHHHHHHHHH
Q 036599 36 QKLNDRLLKLRSL-------MKKETVIEDAITYIRQLKG 67 (189)
Q Consensus 36 ~kln~~f~~LRsl-------~DKaSIl~dAI~YIk~Lq~ 67 (189)
.++-+.+..|..| .|.|+-+..=|.|+|+|=.
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555 5666666666666666543
No 140
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=58.16 E-value=48 Score=22.29 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=33.1
Q ss_pred ccEEEEEecCceEEEEEEeCCCC------ChHHHHHHHHHhCCCeEEEEEEEee
Q 036599 106 EDVKVTNMGGNKLRINIIFGKKR------GNFTKLVEAMNALGFVFGDTSVTTL 153 (189)
Q Consensus 106 ~~V~V~~~~~~~v~I~i~c~~~~------g~l~~il~aLe~l~L~V~~a~is~~ 153 (189)
+.|.+.. .++.+.|.+.++... .-+..+.++|...|+.+.+.+++..
T Consensus 27 v~v~l~~-~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 27 VEVKLRL-QGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEE-ETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEE-eCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 4566655 356899999997642 4567788899999999998887754
No 141
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=56.80 E-value=14 Score=21.26 Aligned_cols=18 Identities=44% Similarity=0.726 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 036599 30 AERRRRQKLNDRLLKLRS 47 (189)
Q Consensus 30 ~ER~RR~kln~~f~~LRs 47 (189)
-=|+||+.|..++..||+
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 347889999999999885
No 142
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.70 E-value=52 Score=21.37 Aligned_cols=43 Identities=23% Similarity=0.375 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHHHHHHH
Q 036599 28 LEAERRRRQKLNDRLLKLRSL--MKKETVIEDAITYIRQLKGRVLFLC 73 (189)
Q Consensus 28 ~~~ER~RR~kln~~f~~LRsl--~DKaSIl~dAI~YIk~Lq~kv~~Le 73 (189)
+..=|.-|-.++.++..+..+ +.| ..+|.+||+++-..++.+.
T Consensus 13 ~~~lR~~RHD~~NhLqvI~gllqlg~---~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 13 IDSLRAQRHDFLNHLQVIYGLLQLGK---YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHH
Confidence 344467778888888888888 433 4788999999999988773
No 143
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=55.96 E-value=8.1 Score=32.66 Aligned_cols=46 Identities=33% Similarity=0.390 Sum_probs=37.8
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhc---------ccccchHHHHHHHHHHHHHHH
Q 036599 24 KSKNLEAERRRRQKLNDRLLKLRSL---------MKKETVIEDAITYIRQLKGRV 69 (189)
Q Consensus 24 ~~~h~~~ER~RR~kln~~f~~LRsl---------~DKaSIl~dAI~YIk~Lq~kv 69 (189)
+.+=+..||+|=-.||+-|..||.+ +.|.-.|.-|-+||..|++-.
T Consensus 73 R~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 73 RLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred cccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 3455678888889999999999999 567778899999999887643
No 144
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=55.01 E-value=47 Score=20.34 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=26.0
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 126 KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 126 ~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
..++.+.+++.+|.+.++.|.-.+.+ +..+ +|.+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s--~~~i--s~~v~ 46 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMISTS--EIKI--SCLID 46 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcc--CceE--EEEEe
Confidence 45899999999999999999777643 2222 46665
No 145
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=54.93 E-value=19 Score=24.21 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=25.3
Q ss_pred cEEEEEecCceEEEEEEeCCCCChHHHHHHHHHh
Q 036599 107 DVKVTNMGGNKLRINIIFGKKRGNFTKLVEAMNA 140 (189)
Q Consensus 107 ~V~V~~~~~~~v~I~i~c~~~~g~l~~il~aLe~ 140 (189)
+-+|+...++++.+-|.|+++.-+|.+|=..+++
T Consensus 6 dW~Vsrt~dGdYrL~itcp~Ke~LlqSIEgmi~~ 39 (71)
T PF11619_consen 6 DWEVSRTLDGDYRLVITCPKKEWLLQSIEGMIKE 39 (71)
T ss_dssp S-EEEEETTTCEEEEEEESSHHHHHHHHHHHHHH
T ss_pred cceeeeccCCceEEEEecCcHHHHHHHHHHHHHH
Confidence 3456665678899999999998777777666654
No 146
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=54.76 E-value=60 Score=21.49 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=26.7
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 125 GKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 125 ~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
...+|.+.+++.+|.+.++.|..... .+..+ +|.+.
T Consensus 12 ~~~~g~~~~if~~L~~~~I~v~~i~~--s~~~i--s~~v~ 47 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDLIST--SEVSV--SLTLD 47 (75)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEEc--CCcEE--EEEEE
Confidence 34589999999999999999977753 33333 56666
No 147
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=53.66 E-value=99 Score=30.13 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=39.1
Q ss_pred eEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEE-EEEEEE
Q 036599 117 KLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATL-FSSVLE 164 (189)
Q Consensus 117 ~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l-~~~~vk 164 (189)
.+.|.|.-.+++|+|.+|+++|-+.+..|.+++....++.+. -.|.++
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~ 675 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE 675 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE
Confidence 466888889999999999999999999999999999744443 235555
No 148
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=51.16 E-value=84 Score=22.09 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=45.3
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL--KGATLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
+.+.+....+|+.|.++|.+.+--|+.|-..+.++. ++.+--.++|.. .-+++-|.--|.++
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s------~R~~~lL~~QLeKl 67 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS------DRSVDLLTSQLEKL 67 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC------CCChHHHHHHHHHH
Confidence 466777778999999999999999999999999997 455433455541 23455666555554
No 149
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=51.15 E-value=96 Score=28.44 Aligned_cols=47 Identities=9% Similarity=0.088 Sum_probs=36.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEe
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKG-ATLFSSVLEG 165 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~vk~ 165 (189)
.|-++.++++|.|.++|+.|...|+.+++..+-+..+ ..-+.|.|..
T Consensus 18 SLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~ 65 (436)
T TIGR01268 18 SLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF 65 (436)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE
Confidence 3444446789999999999999999999999998643 3345677774
No 150
>PRK08639 threonine dehydratase; Validated
Probab=49.97 E-value=1.3e+02 Score=26.94 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=41.6
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeE--EEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGAT--LFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~--l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
+..+.+++.-|.+||.|.++++.+-+.+-+|+..+-....+.- .-.+.++ .. + .-..++|.++|.+
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE-~~-~--~~h~~~i~~~L~~ 401 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE-LK-D--AEDYDGLIERMEA 401 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE-eC-C--HHHHHHHHHHHHH
Confidence 5678899999999999999999666555588877654322211 1134455 21 1 2345566666654
No 151
>PRK14637 hypothetical protein; Provisional
Probab=48.63 E-value=1.3e+02 Score=23.39 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=40.4
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 127 KRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 127 ~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
.-|....+-.+++++|+++..+.+...++..+-.+.+. ..++=..-+++.+.++|..++.
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID-~~~gV~iddC~~vSr~Is~~LD 66 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIY-SAGGVGLDDCARVHRILVPRLE 66 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEE-CCCCCCHHHHHHHHHHHHHHhc
Confidence 46888888889999999999999999766543345554 2121112256677777666653
No 152
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=47.96 E-value=35 Score=33.06 Aligned_cols=60 Identities=8% Similarity=0.094 Sum_probs=49.1
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
..++|-..+++|+|-.|+.+|. +|.-+.++|.+..++..|.+. + ..+-..+.+++.+++-
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~---~---~~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK---P---GFDRATVERDVTRVLA 691 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec---C---cccHHHHHHHHHHHHh
Confidence 4788888999999999999999 999999999999998888887 1 2345666777766653
No 153
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=46.90 E-value=1.7e+02 Score=26.21 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=31.8
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT 152 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~ 152 (189)
+..+.+++.-|.+||.|.++++.+-+.+.+|+...--.
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~ 360 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTK 360 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeee
Confidence 56789999999999999999997777776888777653
No 154
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=46.32 E-value=1.1e+02 Score=24.23 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=36.8
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEE
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL---KGATLFSSVLE 164 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~---~~~~l~~~~vk 164 (189)
+.+.|.-+++||-|+++|+-|-+.|..|++.--+.- ++++---++++
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~ 55 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFE 55 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEE
Confidence 456667789999999999999999999998887775 56654345555
No 155
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=45.39 E-value=27 Score=22.72 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 036599 60 TYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 60 ~YIk~Lq~kv~~Le~~~~~l 79 (189)
.||.+|+.++..|+.+...|
T Consensus 26 ~~~~~Le~~~~~L~~en~~L 45 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEEL 45 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 56677777777776666544
No 156
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.09 E-value=93 Score=20.84 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=27.3
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 125 GKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 125 ~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
+..+|.+.+|+++|...++.|-.... ..+.+ +|++.
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~--s~~~i--sftv~ 47 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST--SETNV--TVSLD 47 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe--CCCEE--EEEEe
Confidence 34689999999999999999888854 22332 66776
No 157
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=45.09 E-value=39 Score=22.97 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
+..||+-|.-||..+++|+.+...+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6789999999999999999886544
No 158
>PRK08818 prephenate dehydrogenase; Provisional
Probab=44.99 E-value=80 Score=28.18 Aligned_cols=44 Identities=11% Similarity=0.244 Sum_probs=33.6
Q ss_pred EEEEEEeC-CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 118 LRINIIFG-KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 118 v~I~i~c~-~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
+++.+ + ++||.+.+|+..|-..|+++.+.++......-. .|.+.
T Consensus 298 l~~~v--~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y-~f~i~ 342 (370)
T PRK08818 298 LSVYL--PEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGEL-HFRIG 342 (370)
T ss_pred EEEEC--CCCCCChHHHHHHHHHHcCcccceEEEecccCceE-EEEEE
Confidence 44444 5 889999999999999999999999955544443 36665
No 159
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=44.54 E-value=86 Score=25.15 Aligned_cols=71 Identities=8% Similarity=0.056 Sum_probs=47.0
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL--KGATLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
...+.+.+...++||++-++...|..+|+.+.+....+. .+.--.-|++.+.-.--...+...|++.+..+
T Consensus 90 ~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al 162 (176)
T COG2716 90 PAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEAL 162 (176)
T ss_pred CceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHH
Confidence 345778888889999999999999999988876665552 22111123443221222367788888887765
No 160
>PF14992 TMCO5: TMCO5 family
Probab=43.98 E-value=31 Score=29.75 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~ 78 (189)
-.|++.||++||++++.++.+++.
T Consensus 146 ~eDq~~~i~klkE~L~rmE~ekE~ 169 (280)
T PF14992_consen 146 CEDQANEIKKLKEKLRRMEEEKEM 169 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999997753
No 161
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=42.93 E-value=78 Score=25.51 Aligned_cols=46 Identities=20% Similarity=0.134 Sum_probs=36.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC--eEEEEEEEE
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKG--ATLFSSVLE 164 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~--~~l~~~~vk 164 (189)
-++|..+++||+|.++...+.++|-.++.++-....+ .-+-++-++
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE 51 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE 51 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence 4677788999999999999999999999998777544 333344444
No 162
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.32 E-value=59 Score=22.53 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=28.8
Q ss_pred EeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeE
Q 036599 123 IFGKKRGNFTKLVEAMNALGFVFGDTSVTT--LKGAT 157 (189)
Q Consensus 123 ~c~~~~g~l~~il~aLe~l~L~V~~a~is~--~~~~~ 157 (189)
+-..+|-+|-++.-||..|+.-|-+|.|.. .+++-
T Consensus 6 sGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~ 42 (77)
T cd04898 6 SGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQ 42 (77)
T ss_pred cCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCee
Confidence 334579999999999999999999999986 34444
No 163
>PRK14646 hypothetical protein; Provisional
Probab=42.22 E-value=1.6e+02 Score=22.83 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCcc-ccCHHHHHHHHHHHHh
Q 036599 133 KLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDR-IIRVEETRELLLKIIR 187 (189)
Q Consensus 133 ~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~-~~s~~~lk~~L~~~i~ 187 (189)
-+-.+++++|+++..+.+..-++..+..+.+.-..+++- .-+++.+.++|..++.
T Consensus 12 li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD 67 (155)
T PRK14646 12 LLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIE 67 (155)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhC
Confidence 344557899999999999997665544555541212212 2256667777766664
No 164
>PRK14623 hypothetical protein; Provisional
Probab=40.98 E-value=1.4e+02 Score=21.81 Aligned_cols=24 Identities=4% Similarity=0.036 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~ 78 (189)
+++-..-.+++|+++++++.+...
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~ 26 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDT 26 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667778888888888888764
No 165
>PRK06349 homoserine dehydrogenase; Provisional
Probab=40.25 E-value=2e+02 Score=25.99 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=31.7
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT 152 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~ 152 (189)
..++|++...++||+|.+|...|.+.++.+.+..-..
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~ 383 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKG 383 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEecc
Confidence 3589999999999999999999999999888665443
No 166
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.20 E-value=51 Score=22.54 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
+..||+-|.-||-.|++|..+...+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l 37 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 5789999999999999998887643
No 167
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=39.72 E-value=54 Score=22.59 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhc--ccccchHHHHHH-HHHHHH
Q 036599 37 KLNDRLLKLRSL--MKKETVIEDAIT-YIRQLK 66 (189)
Q Consensus 37 kln~~f~~LRsl--~DKaSIl~dAI~-YIk~Lq 66 (189)
.|.+++..|.+- ..||.+|-+||+ ||.+.+
T Consensus 15 E~~eRL~~Ls~~tgrtkayyvrEaIE~~ieemE 47 (80)
T COG4710 15 ELKERLDNLSKNTGRTKAYYVREAIEAYIEEME 47 (80)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 356666667666 789999999996 666544
No 168
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=39.44 E-value=50 Score=25.73 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=23.6
Q ss_pred chhhhhhchHHHHHHHHHHHHHHHHHHhc
Q 036599 20 KAVYKSKNLEAERRRRQKLNDRLLKLRSL 48 (189)
Q Consensus 20 ~~~~~~~h~~~ER~RR~kln~~f~~LRsl 48 (189)
+...+.++...||+||-=-..-|.-||..
T Consensus 8 t~kErEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 8 TWKERENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred cHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566788889999997777779999998
No 169
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=39.39 E-value=2.7e+02 Score=24.55 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=34.3
Q ss_pred CceEEEEEE---eCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 115 GNKLRINII---FGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~---c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.+-..|.+. -...+|.+.+++.+|.+.++.|.....+.....+ +|.+.
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~I--s~~V~ 308 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSI--SLTVD 308 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceE--EEEEe
Confidence 456778887 3556899999999999999999866554333222 45554
No 170
>PRK14626 hypothetical protein; Provisional
Probab=38.89 E-value=1.6e+02 Score=21.67 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
+++-+.-.+++|+++++++.+....
T Consensus 7 ~~~mmkqaq~mQ~km~~~qeeL~~~ 31 (110)
T PRK14626 7 LAELMKQMQSIKENVEKAKEELKKE 31 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777888889999888888643
No 171
>PLN02551 aspartokinase
Probab=38.89 E-value=1.8e+02 Score=27.28 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=34.3
Q ss_pred CceEEEEEEeCC---CCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 115 GNKLRINIIFGK---KRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c~~---~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.+..+|+|.+.. .+|.+.+|+.+|.+.++.|.-...+ ...+ +|++.
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssS--e~sI--s~~v~ 412 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--EVSI--SLTLD 412 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEecc--CCEE--EEEEe
Confidence 455788998764 5899999999999999999888433 3222 56665
No 172
>PRK14639 hypothetical protein; Provisional
Probab=38.81 E-value=1.3e+02 Score=22.92 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=35.7
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 134 LVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 134 il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
+-..++++|+++..+.+...++..+-.+.+. ..++=..-+++.+.++|..++.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id-~~~gv~iddC~~vSr~is~~LD 55 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYIT-KEGGVNLDDCERLSELLSPIFD 55 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEe-CCCCCCHHHHHHHHHHHHHHhc
Confidence 3456889999999999999877654456665 2222113366677777777664
No 173
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=38.57 E-value=42 Score=17.85 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhhh
Q 036599 62 IRQLKGRVLFLCDQVL 77 (189)
Q Consensus 62 Ik~Lq~kv~~Le~~~~ 77 (189)
|..|+.+|.+|+.+..
T Consensus 3 ~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 3 MNRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678888888888764
No 174
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=38.40 E-value=1e+02 Score=19.32 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=22.3
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEE
Q 036599 125 GKKRGNFTKLVEAMNALGFVFGDTSVT 151 (189)
Q Consensus 125 ~~~~g~l~~il~aLe~l~L~V~~a~is 151 (189)
++.+|.+.+++.+|.+.|+.|.-...+
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 567999999999999999999755433
No 175
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=37.92 E-value=1.5e+02 Score=21.28 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~ 78 (189)
+++.+.-++++|+++++++.+...
T Consensus 7 ~~~m~kqaq~mQ~k~~~~q~eL~~ 30 (102)
T TIGR00103 7 LGELMKQAQQMQEKMKKLQEEIAQ 30 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777788888899999888864
No 176
>PRK14645 hypothetical protein; Provisional
Probab=37.85 E-value=1.8e+02 Score=22.68 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=34.7
Q ss_pred HHHH-HHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCcc-ccCHHHHHHHHHHHHh
Q 036599 131 FTKL-VEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDR-IIRVEETRELLLKIIR 187 (189)
Q Consensus 131 l~~i-l~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~-~~s~~~lk~~L~~~i~ 187 (189)
+..+ -..++++|+++..+.+...++..+..+.+....+++. .-+++.+.++|..++.
T Consensus 11 i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD 69 (154)
T PRK14645 11 LQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELD 69 (154)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhc
Confidence 3344 4457899999999999987654433455541112212 2256677777777664
No 177
>PRK06291 aspartate kinase; Provisional
Probab=37.56 E-value=2.7e+02 Score=25.41 Aligned_cols=48 Identities=21% Similarity=0.118 Sum_probs=34.8
Q ss_pred CceEEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 115 GNKLRINIIFG---KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.+-..|++.+. ..+|.+.+++.+|.+.|+.|....-++....+ +|.+.
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~ 369 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVD 369 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEe
Confidence 45578888764 35899999999999999999876544433332 55555
No 178
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=37.16 E-value=59 Score=22.67 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
+..||+-|.=||..|++|+.+...+
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L 37 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999887654
No 179
>PLN02705 beta-amylase
Probab=36.38 E-value=56 Score=31.35 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=22.8
Q ss_pred chhhhhhchHHHHHHHHHHHHHHHHHHhc
Q 036599 20 KAVYKSKNLEAERRRRQKLNDRLLKLRSL 48 (189)
Q Consensus 20 ~~~~~~~h~~~ER~RR~kln~~f~~LRsl 48 (189)
++..+.++...||+||.=-..-|.-||..
T Consensus 81 ~~~e~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 81 REKEKERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 35567888899999997777777778877
No 180
>PRK14625 hypothetical protein; Provisional
Probab=36.07 E-value=1.8e+02 Score=21.44 Aligned_cols=24 Identities=0% Similarity=0.062 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~ 78 (189)
+.+.+.-.+++|+++++++.+...
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~ 27 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAE 27 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667778888888888888764
No 181
>PRK08210 aspartate kinase I; Reviewed
Probab=35.82 E-value=2.7e+02 Score=24.68 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=38.6
Q ss_pred CceEEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 115 GNKLRINIIFG---KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 115 ~~~v~I~i~c~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
++-.+|.+... ..+|.+.+++++|.+.++.|.. +++.+..+ +|.+. . -+.+...++|++.+
T Consensus 337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~--~~~s~~~i--s~vv~-~------~~~~~a~~~Lh~~f 400 (403)
T PRK08210 337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ--SADSHTTI--WVLVK-E------EDMEKAVNALHDAF 400 (403)
T ss_pred CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE--EecCCCEE--EEEEc-H------HHHHHHHHHHHHHh
Confidence 45566767653 4689999999999999999975 33322232 45555 1 12455566666543
No 182
>PRK14627 hypothetical protein; Provisional
Probab=34.36 E-value=1.8e+02 Score=20.96 Aligned_cols=23 Identities=4% Similarity=0.169 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 036599 56 EDAITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 56 ~dAI~YIk~Lq~kv~~Le~~~~~ 78 (189)
.+-..-.+++|+++++++.+...
T Consensus 4 ~~~mkqaq~mQ~km~~~Q~el~~ 26 (100)
T PRK14627 4 RQLMQMAQQMQRQMQKVQEELAA 26 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556677888888888888753
No 183
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.99 E-value=1.3e+02 Score=20.27 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhc---ccc-cchHHHHHHHHHHHHHHHHHHHhhhhh
Q 036599 37 KLNDRLLKLRSL---MKK-ETVIEDAITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 37 kln~~f~~LRsl---~DK-aSIl~dAI~YIk~Lq~kv~~Le~~~~~ 78 (189)
++...|..+..| .|- ++-|++|+.-+.+|+..+..|..+...
T Consensus 20 k~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 20 KNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666 232 346899999999999999999988653
No 184
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=33.53 E-value=67 Score=29.76 Aligned_cols=37 Identities=8% Similarity=0.199 Sum_probs=33.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKG 155 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 155 (189)
.++|.|.++-|+..+|+..|-..++++....|.+.+-
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~~ 38 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGR 38 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCCe
Confidence 4789999999999999999999999999999977643
No 185
>PRK14624 hypothetical protein; Provisional
Probab=33.37 E-value=2e+02 Score=21.34 Aligned_cols=24 Identities=4% Similarity=0.256 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~ 78 (189)
+++...-.+++|+++++++.+..+
T Consensus 8 m~~~mkqAq~mQ~km~~~QeeL~~ 31 (115)
T PRK14624 8 MSEALSNMGNIREKMEEVKKRIAS 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556666777788888888777754
No 186
>PRK14638 hypothetical protein; Provisional
Probab=32.90 E-value=2.2e+02 Score=21.98 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=32.5
Q ss_pred HHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCcc-ccCHHHHHHHHHHHHh
Q 036599 136 EAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDR-IIRVEETRELLLKIIR 187 (189)
Q Consensus 136 ~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~-~~s~~~lk~~L~~~i~ 187 (189)
..++++|+++..+.+...++..+-.+.+. ..+++- .-+++.+.+.|..++.
T Consensus 16 ~i~~~~G~elvdve~~~~~~~~~lrV~ID-~~~G~v~lddC~~vSr~is~~LD 67 (150)
T PRK14638 16 RIAEEQGLEIFDVQYRRESRGWVLRIIID-NPVGYVSVRDCELFSREIERFLD 67 (150)
T ss_pred HHHHHcCCEEEEEEEEecCCCcEEEEEEE-CCCCCcCHHHHHHHHHHHHHHhc
Confidence 45789999999999998765443355554 222211 2256677777776664
No 187
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=32.45 E-value=51 Score=19.38 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 036599 60 TYIRQLKGRVLFL 72 (189)
Q Consensus 60 ~YIk~Lq~kv~~L 72 (189)
+||+.|..++.+|
T Consensus 23 ~YV~~L~~rl~el 35 (35)
T PF12180_consen 23 AYVRGLLARLKEL 35 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 6999999998876
No 188
>PRK14621 hypothetical protein; Provisional
Probab=32.25 E-value=2.1e+02 Score=21.10 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~ 78 (189)
+++...-.+++|++.++++.+.+.
T Consensus 6 m~~mmkqaq~mQ~km~~~Q~eL~~ 29 (111)
T PRK14621 6 LGDMMKQIQQAGEKMQDVQKQLEK 29 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455667777888888888887754
No 189
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=31.45 E-value=59 Score=22.34 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=41.8
Q ss_pred EEEeCC-CCChHHHHHHHHHhCCCeEEEEEEEeeCCeE---------EEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 121 NIIFGK-KRGNFTKLVEAMNALGFVFGDTSVTTLKGAT---------LFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 121 ~i~c~~-~~g~l~~il~aLe~l~L~V~~a~is~~~~~~---------l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
.+.-.+ ..|.+..+-..|-++|+.|.+.+- ..+.+ ..++.+.+. +. ..+.+.++++|..+=
T Consensus 3 tvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~-~~--~~~~~~lr~~L~~la 73 (84)
T cd04871 3 TLLGRPLTAEQLAAVTRVVADQGLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVR-GQ--PADLEALRAALLELA 73 (84)
T ss_pred EEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH--hhccccccccCCCCcEEEEEEEe-CC--CCCHHHHHHHHHHHh
Confidence 344445 689999999999999999877655 33332 335555533 33 368999999998654
No 190
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.11 E-value=1.2e+02 Score=17.99 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=23.2
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 036599 125 GKKRGNFTKLVEAMNALGFVFGDTSVTT 152 (189)
Q Consensus 125 ~~~~g~l~~il~aLe~l~L~V~~a~is~ 152 (189)
+..+|.+.+++.+|.+.++.+.....+.
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~~ 36 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQSV 36 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEcC
Confidence 4568999999999999999997765543
No 191
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=31.05 E-value=1.6e+02 Score=19.56 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=25.8
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 127 KRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 127 ~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.+|.+.+|+++|...|+.|-.... ..+.+ +|.+.
T Consensus 14 ~~g~~~~If~~la~~~I~vd~I~~--s~~~i--sftv~ 47 (73)
T cd04934 14 SHGFLARIFAILDKYRLSVDLIST--SEVHV--SMALH 47 (73)
T ss_pred ccCHHHHHHHHHHHcCCcEEEEEe--CCCEE--EEEEe
Confidence 489999999999999998888754 22332 56666
No 192
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=30.85 E-value=1e+02 Score=28.21 Aligned_cols=19 Identities=5% Similarity=-0.067 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhhhhcc
Q 036599 63 RQLKGRVLFLCDQVLQVEP 81 (189)
Q Consensus 63 k~Lq~kv~~Le~~~~~l~~ 81 (189)
+.|+.++.++..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~ 102 (438)
T PTZ00361 84 KPAQEKNEAELKKVDDLRG 102 (438)
T ss_pred hhHHHHHHHHHHHHHHhhC
Confidence 3566777777777765543
No 193
>PRK14647 hypothetical protein; Provisional
Probab=30.29 E-value=2.6e+02 Score=21.69 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=33.1
Q ss_pred HHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 135 VEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 135 l~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
-.+++++|+++..+.+...++..+-.+.+. ..++=..-+++.+.++|..++.
T Consensus 15 ~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID-~~~gvslddC~~vSr~is~~LD 66 (159)
T PRK14647 15 EQVLSSLGLELVELEYKREGREMVLRLFID-KEGGVNLDDCAEVSRELSEILD 66 (159)
T ss_pred HHHHHHCCCEEEEEEEEecCCCeEEEEEEe-CCCCCCHHHHHHHHHHHHHHHc
Confidence 344789999999999998766443344444 2222112366677777776664
No 194
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=30.18 E-value=67 Score=22.93 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVL 77 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~ 77 (189)
+..-++.|..+..+|.+|+.-..
T Consensus 61 l~~~l~~Id~Ie~~V~~LE~~v~ 83 (99)
T PF10046_consen 61 LQPYLQQIDQIEEQVTELEQTVY 83 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555544443
No 195
>PRK06291 aspartate kinase; Provisional
Probab=30.09 E-value=4.3e+02 Score=24.08 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=35.8
Q ss_pred CceEEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 115 GNKLRINIIFG---KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.+-..|.+... ..+|++.+++.+|.+.++.|.-..-++.+-.+ +|.+.
T Consensus 396 ~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~I--s~vV~ 446 (465)
T PRK06291 396 KDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNI--SFVVD 446 (465)
T ss_pred CCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeE--EEEEe
Confidence 34567888765 35899999999999999999876665655554 55555
No 196
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=29.89 E-value=43 Score=26.41 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=30.7
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhc-----ccc-c-----chHHHHHHHHHHHHHH
Q 036599 24 KSKNLEAERRRRQKLNDRLLKLRSL-----MKK-E-----TVIEDAITYIRQLKGR 68 (189)
Q Consensus 24 ~~~h~~~ER~RR~kln~~f~~LRsl-----~DK-a-----SIl~dAI~YIk~Lq~k 68 (189)
...+-..||.|-+++|+.|.-|+.| .|+ + .|=.+-|....|||.|
T Consensus 23 ~~~r~~~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~q~q 78 (173)
T KOG4447|consen 23 ECDRQRKERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDELQKQ 78 (173)
T ss_pred hhhhhHHHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHHHHH
Confidence 3444557999999999999999999 221 1 1335566666666664
No 197
>PRK09034 aspartate kinase; Reviewed
Probab=29.58 E-value=3.6e+02 Score=24.57 Aligned_cols=48 Identities=8% Similarity=-0.023 Sum_probs=33.6
Q ss_pred CceEEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 115 GNKLRINIIFG---KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.+-..|.+... ..+|++.+++.+|.+.+++|.-...++.+..+ +|.+.
T Consensus 383 ~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~I--s~vV~ 433 (454)
T PRK09034 383 HDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISI--MFGVK 433 (454)
T ss_pred CCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceE--EEEEc
Confidence 45567777532 45899999999999999999877654433222 45555
No 198
>PRK12483 threonine dehydratase; Reviewed
Probab=29.29 E-value=4.8e+02 Score=24.43 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=30.3
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT 152 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~ 152 (189)
+..+.+.+.-+++||.|.+++..|-+. +|+..+-..
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~ 378 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRY 378 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEe
Confidence 567889999999999999999999877 777666654
No 199
>PRK14629 hypothetical protein; Provisional
Probab=29.23 E-value=2.2e+02 Score=20.54 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 036599 57 DAITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 57 dAI~YIk~Lq~kv~~Le~~~~~ 78 (189)
+...-.+++|+++++++.+..+
T Consensus 7 ~~mkqaq~mQ~km~~~Q~eL~~ 28 (99)
T PRK14629 7 DFLKNMSSFKDNIDNIKKEISQ 28 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566778899999999888864
No 200
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=29.22 E-value=4.3e+02 Score=24.51 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=29.4
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT 152 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~ 152 (189)
+.++++.+.-|.+||.|.+++++|-. .+|+..+-..
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~ 358 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRY 358 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEe
Confidence 57899999999999999999999987 3555555544
No 201
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.67 E-value=53 Score=25.84 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhc-----ccccchHHHHHHHHHHHHHHHHHHHhhhh
Q 036599 32 RRRRQKLNDRLLKLRSL-----MKKETVIEDAITYIRQLKGRVLFLCDQVL 77 (189)
Q Consensus 32 R~RR~kln~~f~~LRsl-----~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~ 77 (189)
..-+..+......+|.+ -|+++..+.=-.|++.|++++++++..+.
T Consensus 121 ~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~ 171 (174)
T COG1076 121 VEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171 (174)
T ss_pred CchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666 68999999999999999999999998764
No 202
>PRK14622 hypothetical protein; Provisional
Probab=28.64 E-value=2.3e+02 Score=20.50 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~ 78 (189)
+.+-..-.+++|++.++++.+..+
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~ 26 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAE 26 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556667777777777777653
No 203
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=28.61 E-value=59 Score=15.24 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=9.0
Q ss_pred ChHHHHHHHHHh
Q 036599 129 GNFTKLVEAMNA 140 (189)
Q Consensus 129 g~l~~il~aLe~ 140 (189)
|+|-++++||+.
T Consensus 1 gvmdsllealqt 12 (15)
T PF06345_consen 1 GVMDSLLEALQT 12 (15)
T ss_dssp -HHHHHHHHHHH
T ss_pred CcHHHHHHHHHc
Confidence 578888998875
No 204
>PRK06635 aspartate kinase; Reviewed
Probab=28.15 E-value=4.2e+02 Score=23.35 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=35.1
Q ss_pred CceEEEEEEe-CCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEE
Q 036599 115 GNKLRINIIF-GKKRGNFTKLVEAMNALGFVFGDTSVTTLKG-ATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c-~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~vk 164 (189)
++-+.|++.+ ...+|.+.+++.+|.+.|+.|.....+...+ ..-.+|.+.
T Consensus 260 ~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~ 311 (404)
T PRK06635 260 KDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVP 311 (404)
T ss_pred CCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEc
Confidence 4456677776 3358999999999999999999876654442 332355554
No 205
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.08 E-value=78 Score=23.34 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=28.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 036599 49 MKKETVIEDAITYIRQLKGRVLFLCDQVLQVEP 81 (189)
Q Consensus 49 ~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l~~ 81 (189)
.||+++-+.--.-.+.++++|+.|+.++.-++.
T Consensus 63 ~dk~a~~s~leak~k~see~IeaLqkkK~YlEk 95 (114)
T KOG3501|consen 63 SDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEK 95 (114)
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 699999999888999999999999998876653
No 206
>PRK07431 aspartate kinase; Provisional
Probab=27.70 E-value=4.3e+02 Score=24.79 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=29.3
Q ss_pred CceEEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEE
Q 036599 115 GNKLRINIIFG---KKRGNFTKLVEAMNALGFVFGDTS 149 (189)
Q Consensus 115 ~~~v~I~i~c~---~~~g~l~~il~aLe~l~L~V~~a~ 149 (189)
.+-..|.+.+. ..+|++.+++.+|.+.++.|....
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~ 383 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS 383 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence 45677888875 358999999999999999997776
No 207
>PLN02551 aspartokinase
Probab=27.69 E-value=4.7e+02 Score=24.46 Aligned_cols=47 Identities=15% Similarity=0.088 Sum_probs=33.4
Q ss_pred ceEEEEEEeC--CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 116 NKLRINIIFG--KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 116 ~~v~I~i~c~--~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
+-..|.+... ..+|++.+++.+|.+.|+.|.-..-.+..-.+ +|.|.
T Consensus 444 ~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinI--S~vV~ 492 (521)
T PLN02551 444 GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNI--SLIVN 492 (521)
T ss_pred CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEE--EEEEe
Confidence 4455666654 35899999999999999999777655544443 55555
No 208
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=27.61 E-value=2.6e+02 Score=21.85 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=31.3
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEE
Q 036599 125 GKKRGNFTKLVEAMNALGFVFGDTSVTTL-KGATLFSSVLE 164 (189)
Q Consensus 125 ~~~~g~l~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~vk 164 (189)
+.+|-...=+...|++++..|..+.|... ++.+..++.++
T Consensus 55 p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyyA~L~~~ 95 (151)
T COG1259 55 PPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYYATLILE 95 (151)
T ss_pred CCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEEEEEEEE
Confidence 44666666677889999999999999985 56556678887
No 209
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=27.47 E-value=1.9e+02 Score=22.53 Aligned_cols=50 Identities=12% Similarity=0.252 Sum_probs=35.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 036599 26 KNLEAERRRRQKLNDRLLKLRSLMKKETVIEDAITYIRQLKGRVLFLCDQVLQVE 80 (189)
Q Consensus 26 ~h~~~ER~RR~kln~~f~~LRsl~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l~ 80 (189)
.-...+++-|.++.+.-..++++ |.-+|=..|.| |++++.+|+++.+++.
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~i----S~qDeFAkwaK-l~Rk~~kl~~el~~~~ 86 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAI----SAQDEFAKWAK-LNRKLDKLEEELEKLN 86 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-----TTTSHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcC----CcHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34456677778887777777776 33446677777 8999999999887654
No 210
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.10 E-value=1.2e+02 Score=28.68 Aligned_cols=45 Identities=31% Similarity=0.510 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhcccccch-HHHHHHHHHHHHHHHHHHHhhh
Q 036599 32 RRRRQKLNDRLLKLRSLMKKETV-IEDAITYIRQLKGRVLFLCDQV 76 (189)
Q Consensus 32 R~RR~kln~~f~~LRsl~DKaSI-l~dAI~YIk~Lq~kv~~Le~~~ 76 (189)
=+|=+++.+++..|++|.-|... +.|.+.|-.+++.+++.|...-
T Consensus 296 p~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~ 341 (557)
T COG0497 296 PNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSE 341 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 35668899999999999778777 8999999999988888877544
No 211
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=27.02 E-value=1.6e+02 Score=19.78 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=25.5
Q ss_pred eEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEE
Q 036599 117 KLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSV 150 (189)
Q Consensus 117 ~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~i 150 (189)
.++|+|.| .+.-..+|++..+.++..|++++-
T Consensus 4 l~LiKV~~--~~~~r~ei~~l~~~f~a~ivd~~~ 35 (75)
T PF10369_consen 4 LALIKVKA--TPENRSEILQLAEIFRARIVDVSP 35 (75)
T ss_dssp EEEEEEE---SCHHHHHHHHHHHHTT-EEEEEET
T ss_pred EEEEEEEC--CccCHHHHHHHHHHhCCEEEEECC
Confidence 47899999 567899999999999999988764
No 212
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=27.01 E-value=51 Score=20.59 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhhhhhcc
Q 036599 62 IRQLKGRVLFLCDQVLQVEP 81 (189)
Q Consensus 62 Ik~Lq~kv~~Le~~~~~l~~ 81 (189)
|..|++++..|+.+...|..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766543
No 213
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=26.78 E-value=78 Score=28.25 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhh
Q 036599 54 VIEDAITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 54 Il~dAI~YIk~Lq~kv~~Le~~~~~ 78 (189)
-+++-++|++.|+++++.++..+.+
T Consensus 140 r~n~l~eY~q~Laek~Ek~e~drkK 164 (449)
T KOG3896|consen 140 RLNELTEYMQRLAEKIEKAEKDRKK 164 (449)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhc
Confidence 3688999999999999999977764
No 214
>PF00601 Flu_NS2: Influenza non-structural protein (NS2); InterPro: IPR000968 The Influenza A virus belongs to the class of ssRNA negative-strand viruses. Nonstructural protein 2 (NS2) may play a role in promoting normal replication of the genomic RNAs by preventing the replication of short-length RNA species []. NS1 and NS2 proteins are produced from the same gene by alternative splicing.; GO: 0006405 RNA export from nucleus, 0042025 host cell nucleus; PDB: 1PD3_B.
Probab=26.70 E-value=1.1e+02 Score=21.87 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=28.8
Q ss_pred hhchHHHHHH--HHHHHHHHHHHHhc-------ccccchHHHHHHHHHHHHHHHHHHHhh
Q 036599 25 SKNLEAERRR--RQKLNDRLLKLRSL-------MKKETVIEDAITYIRQLKGRVLFLCDQ 75 (189)
Q Consensus 25 ~~h~~~ER~R--R~kln~~f~~LRsl-------~DKaSIl~dAI~YIk~Lq~kv~~Le~~ 75 (189)
.=|...+|.+ |+.+-++|...|-+ ....++..|-|-+++-||-=+ |.+++
T Consensus 27 D~h~lq~rn~~wreqL~qkfe~IrwlI~e~r~~l~~tensf~qItfmqaLqlLl-Eve~e 85 (94)
T PF00601_consen 27 DYHSLQSRNGKWREQLGQKFEEIRWLIEEHRHRLKITENSFEQITFMQALQLLL-EVEQE 85 (94)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHC----TTSHHHHHHHHHHHHHH-HHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHH
Confidence 4577778887 99999999999999 445667888899988887543 34443
No 215
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=26.02 E-value=1.3e+02 Score=25.84 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=38.2
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEE--EEEEEee
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLF--SSVLEGT 166 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~--~~~vk~~ 166 (189)
-.|.+.-.+.||++.+|-..|-.-|+.|-+..+--..+--+. ++++.+.
T Consensus 78 HvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gt 128 (309)
T KOG2663|consen 78 HVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGT 128 (309)
T ss_pred eeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEecc
Confidence 356666678899999999999999999888877766665555 7777743
No 216
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=26.02 E-value=3e+02 Score=21.05 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=32.4
Q ss_pred HHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 135 VEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 135 l~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
-.++.++|+++..+.+...++..+-.+.+. ..++-..-+++.+.++|..++.
T Consensus 14 ~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id-~~~gv~iddc~~~Sr~is~~LD 65 (154)
T PRK00092 14 EPVVEALGYELVDVEYVKEGRDSTLRIYID-KEGGIDLDDCEEVSRQISAVLD 65 (154)
T ss_pred HHHHHHCCCEEEEEEEEecCCCcEEEEEEE-CCCCCCHHHHHHHHHHHHHHhc
Confidence 345688999999999998655543355554 2122112256667777766664
No 217
>PRK06635 aspartate kinase; Reviewed
Probab=25.81 E-value=3.9e+02 Score=23.54 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=28.2
Q ss_pred CceEEEEEEe---CCCCChHHHHHHHHHhCCCeEEEEE
Q 036599 115 GNKLRINIIF---GKKRGNFTKLVEAMNALGFVFGDTS 149 (189)
Q Consensus 115 ~~~v~I~i~c---~~~~g~l~~il~aLe~l~L~V~~a~ 149 (189)
.+-..|.+.+ ...+|.+.+++++|.+.++.|....
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 4556777765 4568999999999999999998764
No 218
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=25.76 E-value=3.3e+02 Score=29.17 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=48.0
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEE---EEee---C-------------CeEEEEEEEEeeeCCccccCHH
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTS---VTTL---K-------------GATLFSSVLEGTHGGDRIIRVE 176 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~---is~~---~-------------~~~l~~~~vk~~~~~~~~~s~~ 176 (189)
....|.|.|++.|.++-+|..+|..+|+.|.... +... + +..-.-++++.. ........+
T Consensus 16 ~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~HPVl~V~RD~~G~L~~v~~~~~~~~~~ES~I~ieId-~~~d~~~~~ 94 (1528)
T PF05088_consen 16 DHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLIIHPVLNVERDADGKLVAVGPADDSGGTRESWIHIEID-RQSDPEELE 94 (1528)
T ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEEecCcEEEEECCCCcEEEecCCCCCCCceEEEEEEEEc-CCCCHHHHH
Confidence 3568999999999999999999999999876543 2221 1 122223555532 211245667
Q ss_pred HHHHHHHHHHhc
Q 036599 177 ETRELLLKIIRG 188 (189)
Q Consensus 177 ~lk~~L~~~i~~ 188 (189)
.|++.|.+++.+
T Consensus 95 ~L~~~L~~VL~d 106 (1528)
T PF05088_consen 95 ALREDLERVLED 106 (1528)
T ss_pred HHHHHHHHHHHH
Confidence 788888887754
No 219
>PRK09224 threonine dehydratase; Reviewed
Probab=25.57 E-value=5.4e+02 Score=23.79 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=28.9
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT 152 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~ 152 (189)
+.++++.+.-|.+||.|.++++.|- +.+|+..+...
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~ 361 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRY 361 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEe
Confidence 4688999999999999999999998 55666555444
No 220
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.43 E-value=2.2e+02 Score=22.24 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=33.6
Q ss_pred HHHHHH-HHHhCCCeEEEEEEEeeCC-eEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 131 FTKLVE-AMNALGFVFGDTSVTTLKG-ATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 131 l~~il~-aLe~l~L~V~~a~is~~~~-~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
+..+++ .++++|+++..+.+...+. .++ .+.+. ..++=..-+++.+.+++..++.
T Consensus 10 v~~liep~~~~lG~ELv~ve~~~~~~~~~l-rI~id-~~g~v~lddC~~vSr~is~~LD 66 (153)
T COG0779 10 VTELIEPVVESLGFELVDVEFVKEGRDSVL-RIYID-KEGGVTLDDCADVSRAISALLD 66 (153)
T ss_pred HHHHHHHhHhhcCcEEEEEEEEEcCCCcEE-EEEeC-CCCCCCHHHHHHHHHHHHHHhc
Confidence 334444 4689999999999999884 544 33333 1122112256677777766553
No 221
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=25.18 E-value=1.7e+02 Score=20.15 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCC--eEEEEEEEeeCCe------EEEEEEEE--ee-e------CCccccCHHHHHHHHHHHHh
Q 036599 132 TKLVEAMNALGF--VFGDTSVTTLKGA------TLFSSVLE--GT-H------GGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 132 ~~il~aLe~l~L--~V~~a~is~~~~~------~l~~~~vk--~~-~------~~~~~~s~~~lk~~L~~~i~ 187 (189)
.+|=++|+++|+ +|.++.++...+. ++-+-.+. .. . |-+..++.++|++.|..++.
T Consensus 5 mkIk~~L~e~Gi~~~ve~~diss~~~~~~~aDiiVtt~~l~~~~~~~g~~~l~gI~N~~d~~ei~~~~~~~~~ 77 (85)
T PRK10222 5 MKVDQFLTQSNIDHTVNSCAVGEYKSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIK 77 (85)
T ss_pred HHHHHHHHHcCCCeEEEEeehhhcccCCCCCCEEEECccchhhhccCCCceEEEEecccCHHHHHHHHHHHHH
Confidence 356678999998 8888888776554 21110100 00 0 11236688889988887765
No 222
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=25.02 E-value=2.3e+02 Score=19.58 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHHH
Q 036599 30 AERRRRQKLNDRLLKLRSL-MKKETVIEDAITYIRQLKGRV 69 (189)
Q Consensus 30 ~ER~RR~kln~~f~~LRsl-~DKaSIl~dAI~YIk~Lq~kv 69 (189)
.++....+|+..|..+..+ .+|..|...|.+.|..--+++
T Consensus 58 ~~~~~~~~I~~~~~~~~~l~deKv~lA~~~~d~v~~hi~rL 98 (105)
T PF12998_consen 58 KRRELLKEIQEEYERALELSDEKVALAQQAYDLVDRHIRRL 98 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566678888888888888 788888888887776554443
No 223
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=24.42 E-value=1.3e+02 Score=18.74 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Q 036599 56 EDAITYIRQLKGRVLFLCDQVLQVE 80 (189)
Q Consensus 56 ~dAI~YIk~Lq~kv~~Le~~~~~l~ 80 (189)
+.+-+|++.|..++..+..+.+.++
T Consensus 19 ~~v~~~lq~Lt~kL~~vs~RLe~LE 43 (47)
T PF10393_consen 19 NKVTSALQSLTQKLDAVSKRLEALE 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999888888877654
No 224
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=23.86 E-value=45 Score=32.39 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=39.8
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHhc-----------ccccchHHHHHHHHHHHHHHHHHHHhhh
Q 036599 23 YKSKNLEAERRRRQKLNDRLLKLRSL-----------MKKETVIEDAITYIRQLKGRVLFLCDQV 76 (189)
Q Consensus 23 ~~~~h~~~ER~RR~kln~~f~~LRsl-----------~DKaSIl~dAI~YIk~Lq~kv~~Le~~~ 76 (189)
....|+.++|++|-..-++|..|-+| ..++|||. +.|+.+++.-+.+.+..
T Consensus 787 v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~ 848 (856)
T KOG3582|consen 787 VSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKI 848 (856)
T ss_pred eecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhh
Confidence 35689999999999999999998888 57888888 66677766655555443
No 225
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=23.78 E-value=1.3e+02 Score=25.75 Aligned_cols=43 Identities=30% Similarity=0.332 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhc---------ccccchHHHHHHHHHHHHHHH
Q 036599 27 NLEAERRRRQKLNDRLLKLRSL---------MKKETVIEDAITYIRQLKGRV 69 (189)
Q Consensus 27 h~~~ER~RR~kln~~f~~LRsl---------~DKaSIl~dAI~YIk~Lq~kv 69 (189)
-...||+|=..||.-|..||-+ ..|---|.-|-.||--|-..+
T Consensus 178 anarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 178 ANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred cchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 3567888889999999999998 345567888999998776554
No 226
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=23.78 E-value=3.3e+02 Score=20.71 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=25.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeE--EEEEEEee
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVF--GDTSVTTL 153 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V--~~a~is~~ 153 (189)
.+-|.-++.||.|++|+.+|-..++.+ +-|-++--
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek 107 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK 107 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC
Confidence 556667799999999999998776544 44444433
No 227
>PRK03094 hypothetical protein; Provisional
Probab=23.69 E-value=1.4e+02 Score=20.76 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=17.8
Q ss_pred ChHHHHHHHHHhCCCeEEEEE
Q 036599 129 GNFTKLVEAMNALGFVFGDTS 149 (189)
Q Consensus 129 g~l~~il~aLe~l~L~V~~a~ 149 (189)
.-|++|-++|++-|.+|++.+
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQLR 28 (80)
T ss_pred cCcHHHHHHHHHCCCEEEecC
Confidence 468899999999999997654
No 228
>PRK14640 hypothetical protein; Provisional
Probab=23.59 E-value=3.5e+02 Score=20.85 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=32.6
Q ss_pred HHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 136 EAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 136 ~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
..++++|+++..+.+...++..+-.+.+. ..++=..-+++.+.++|..++.
T Consensus 14 p~~~~~G~el~dve~~~~~~~~~lrV~ID-~~~gv~lddC~~vSr~is~~LD 64 (152)
T PRK14640 14 APVVALGFELWGIEFIRAGKHSTLRVYID-GENGVSVENCAEVSHQVGAIMD 64 (152)
T ss_pred HHHHhcCCEEEEEEEEecCCCcEEEEEEE-CCCCCCHHHHHHHHHHHHHHhc
Confidence 44789999999999998665443355554 2122112266677788877664
No 229
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=23.47 E-value=1e+02 Score=18.19 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=25.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 036599 50 KKETVIEDAITYIRQLKGRVLFLCDQVLQVE 80 (189)
Q Consensus 50 DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l~ 80 (189)
||.-|.-|++.-+|+|=+--..|+.++.+++
T Consensus 4 dk~rifmEnV~AvqeLck~t~~Le~rI~ele 34 (36)
T PF13887_consen 4 DKERIFMENVGAVQELCKLTDNLETRIDELE 34 (36)
T ss_pred cHHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 6777899999999999888888888876654
No 230
>PRK10869 recombination and repair protein; Provisional
Probab=23.44 E-value=1.5e+02 Score=27.90 Aligned_cols=44 Identities=32% Similarity=0.219 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHHHHHhh
Q 036599 32 RRRRQKLNDRLLKLRSLMKKET-VIEDAITYIRQLKGRVLFLCDQ 75 (189)
Q Consensus 32 R~RR~kln~~f~~LRsl~DKaS-Il~dAI~YIk~Lq~kv~~Le~~ 75 (189)
-.|=+.+++++..|+.|.-|.. -+.+.++|-++++++++.|+..
T Consensus 295 p~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~ 339 (553)
T PRK10869 295 PNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQ 339 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCC
Confidence 3456889999999999955655 5788888888888888776643
No 231
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=23.20 E-value=5.2e+02 Score=22.73 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=37.8
Q ss_pred ceEEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 116 NKLRINIIFG---KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 116 ~~v~I~i~c~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
+-..|.+... ..+|.+.+++++|.+.|+.|.... +.+..+ +|.+. . -+.+...++|++.+
T Consensus 336 ~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~--~s~~~i--s~vv~-~------~d~~~av~~Lh~~f 398 (401)
T TIGR00656 336 GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG--SSETNI--SFLVD-E------KDAEKAVRKLHEVF 398 (401)
T ss_pred CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCCEE--EEEEe-H------HHHHHHHHHHHHHH
Confidence 4455666653 469999999999999999998543 333333 45555 1 12455555555543
No 232
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.89 E-value=1.1e+02 Score=23.26 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=23.2
Q ss_pred EEeCCC--CChHHHHHHHHHhCCCeEEEEE
Q 036599 122 IIFGKK--RGNFTKLVEAMNALGFVFGDTS 149 (189)
Q Consensus 122 i~c~~~--~g~l~~il~aLe~l~L~V~~a~ 149 (189)
|-||.. +-+--++|.||+..|+.|+-+.
T Consensus 55 Ig~P~s~y~k~skkvlkaleq~gI~vIPvk 84 (139)
T COG1710 55 IGCPPSLYPKVSKKVLKALEQMGIKVIPVK 84 (139)
T ss_pred ecCCchhhhHHHHHHHHHHHhCCceEeeee
Confidence 446664 7788899999999999998876
No 233
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=22.84 E-value=1.3e+02 Score=26.47 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=30.4
Q ss_pred HHhc-ccccchHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 036599 45 LRSL-MKKETVIEDAITYIRQLKGRVLFLCDQVLQVEP 81 (189)
Q Consensus 45 LRsl-~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l~~ 81 (189)
|++| +.-.+=|.++-.-|.+|+++++.|++++..++.
T Consensus 280 L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 280 LKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555 556677899999999999999999999887654
No 234
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=22.81 E-value=3e+02 Score=19.85 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=37.4
Q ss_pred ccEEEEEecCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEE
Q 036599 106 EDVKVTNMGGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATL 158 (189)
Q Consensus 106 ~~V~V~~~~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l 158 (189)
.++.|..++.+...++|.-+...--+-.|-++++++|--|.+..=...+..++
T Consensus 35 Vnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSIDeVvaG~~iv 87 (95)
T PF02680_consen 35 VNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSIDEVVAGKRIV 87 (95)
T ss_dssp EEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEEEEEEEESS--
T ss_pred EEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEeeeeeeecceee
Confidence 56666666666777777777777789999999999999998887666665553
No 235
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.80 E-value=85 Score=20.22 Aligned_cols=17 Identities=29% Similarity=0.344 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhhhh
Q 036599 62 IRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 62 Ik~Lq~kv~~Le~~~~~ 78 (189)
++.+++++++++++.++
T Consensus 50 ~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 50 IRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56666666666666543
No 236
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=22.56 E-value=2.1e+02 Score=25.69 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=44.3
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
....|-+.-.++||.+.+|..+|.+.++.|-+-++...++..+ ..++.. + .+ .+++.+.|.+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~--~iie~D-~---~~-~~~~~~~i~~ 398 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGY--VVIDVD-A---DY-AEEALDALKA 398 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEE--EEEEeC-C---CC-cHHHHHHHHc
Confidence 4466777778899999999999999999998888887776653 444522 1 22 4456555553
No 237
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=22.54 E-value=6.2e+02 Score=25.05 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=36.1
Q ss_pred CceEEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 115 GNKLRINIIFG---KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
++-.+|.+... ..+|++.+++.+|.+.++.|.-..-++.+-.+ +|.+.
T Consensus 394 ~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~~I--s~vV~ 444 (819)
T PRK09436 394 ENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSERSI--SVVID 444 (819)
T ss_pred CCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccceE--EEEEc
Confidence 45677888775 35899999999999999999877665554444 45555
No 238
>PRK14636 hypothetical protein; Provisional
Probab=21.90 E-value=4.1e+02 Score=21.09 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=32.4
Q ss_pred HHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCcc-ccCHHHHHHHHHHHHh
Q 036599 136 EAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDR-IIRVEETRELLLKIIR 187 (189)
Q Consensus 136 ~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~-~~s~~~lk~~L~~~i~ 187 (189)
..++++|+++..+++...++..+-.+.+.-..+++- .-+++.+.++|..++.
T Consensus 13 p~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD 65 (176)
T PRK14636 13 PEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFD 65 (176)
T ss_pred HHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhc
Confidence 347899999999999887655433555541111211 2256677777777664
No 239
>PRK14634 hypothetical protein; Provisional
Probab=21.88 E-value=3.8e+02 Score=20.73 Aligned_cols=51 Identities=12% Similarity=0.093 Sum_probs=30.9
Q ss_pred HHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCcc-ccCHHHHHHHHHHHHh
Q 036599 137 AMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDR-IIRVEETRELLLKIIR 187 (189)
Q Consensus 137 aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~-~~s~~~lk~~L~~~i~ 187 (189)
.++++|+++..+.+...++..+..+.+.-..|++- .-+++.+.++|..++.
T Consensus 16 ~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD 67 (155)
T PRK14634 16 TAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALE 67 (155)
T ss_pred HHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhc
Confidence 46899999999999986554433444441212101 2255667777776664
No 240
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=21.72 E-value=20 Score=34.71 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=48.3
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHhc-----------ccccchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 21 AVYKSKNLEAERRRRQKLNDRLLKLRSL-----------MKKETVIEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 21 ~~~~~~h~~~ER~RR~kln~~f~~LRsl-----------~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
......|+-+|.+||..+.-.|..|.++ +-++.-+.-.+.||.-++.....++++-..+
T Consensus 649 k~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~l 718 (856)
T KOG3582|consen 649 KNRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSL 718 (856)
T ss_pred cCCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhh
Confidence 3456789999999999999999999998 5566667889999999988887777665443
No 241
>PRK00153 hypothetical protein; Validated
Probab=21.47 E-value=3.1e+02 Score=19.54 Aligned_cols=25 Identities=8% Similarity=0.296 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
+++-+.-.+++|+++++++.+....
T Consensus 5 ~~~m~~qaq~~q~~~~~~q~~l~~~ 29 (104)
T PRK00153 5 MQNLMKQAQQMQEKMQKMQEELAQM 29 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566677888888888888888654
No 242
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p. The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).
Probab=21.44 E-value=1.4e+02 Score=23.39 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=26.3
Q ss_pred HHhc--ccccch-HHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 45 LRSL--MKKETV-IEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 45 LRsl--~DKaSI-l~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
|++| ..+.+. +.++..-|++||++++.-|.+..+.
T Consensus 67 iKeltfRs~d~~~~~~v~~~Ikel~k~~~~re~E~~e~ 104 (152)
T PF08644_consen 67 IKELTFRSKDSRHLQEVFRQIKELQKRVKQREQERREK 104 (152)
T ss_pred EEEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445 334444 8999999999999999888777543
No 243
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=21.43 E-value=1e+02 Score=23.76 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Q 036599 54 VIEDAITYIRQLKGRVLFLCDQVL 77 (189)
Q Consensus 54 Il~dAI~YIk~Lq~kv~~Le~~~~ 77 (189)
+||.||. |+|+.|+++++.+..
T Consensus 67 vLG~AIQ--kHLE~qi~e~~~q~~ 88 (137)
T PF15235_consen 67 VLGMAIQ--KHLERQIEEHERQRA 88 (137)
T ss_pred HHHHHHH--HHHHHHHHHhhhccc
Confidence 7999997 899999999988874
No 244
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=21.30 E-value=4.2e+02 Score=24.51 Aligned_cols=62 Identities=8% Similarity=0.070 Sum_probs=40.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC----eEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKG----ATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~----~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
.+.+...+ .|.|.++|+.+++.++.+.+....+... ..-+.|.+... .. ......+-+.|.+
T Consensus 41 ~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~-~~--~~~~~~~~~~l~~ 106 (457)
T TIGR01269 41 QFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLE-AN--EINMSLLIESLRG 106 (457)
T ss_pred EEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEe-cc--HhhHHHHHHHHHh
Confidence 45555444 8999999999999999999999877421 12345666632 22 2334555555543
No 245
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=21.26 E-value=4e+02 Score=20.68 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=33.8
Q ss_pred HHHHHHhC----CCeEEEEEEEeeCCeEEEEEEE--EeeeCCccccCHHHHHHHHHHHH
Q 036599 134 LVEAMNAL----GFVFGDTSVTTLKGATLFSSVL--EGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 134 il~aLe~l----~L~V~~a~is~~~~~~l~~~~v--k~~~~~~~~~s~~~lk~~L~~~i 186 (189)
|-++++.+ |.++.++-++..+..+ .+..+ +..- ++..++.++|.+++..+.
T Consensus 52 I~~ai~~ae~~~~~~i~~V~v~i~g~~v-~~~~~~~~i~i-~~~~i~~~di~~~~~~a~ 108 (187)
T smart00842 52 IREAVEEAERMAGVKIDSVYVGISGRHL-KSVNVSGVVAI-PDKEITQEDIDRVLEAAK 108 (187)
T ss_pred HHHHHHHHHHHhCCcccEEEEEEcCCce-EEEeeEEEEEC-CCCEECHHHHHHHHHHhh
Confidence 55666666 9999888777766655 34332 2222 234799999999987654
No 246
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=21.25 E-value=85 Score=20.22 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=21.0
Q ss_pred HHHHHHHHhc--------------ccccchHHHHHHHHHHHH
Q 036599 39 NDRLLKLRSL--------------MKKETVIEDAITYIRQLK 66 (189)
Q Consensus 39 n~~f~~LRsl--------------~DKaSIl~dAI~YIk~Lq 66 (189)
.+-|++|+.. ||..--+.+|++|+|.|-
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~~~~~~G~~~a~~~lr~~l 44 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDALMDPEEGAREAAAFLRKLL 44 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STTTSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCceEEEEeecCCCCHHHHHHHHHHHHHHhc
Confidence 3457788877 677777889999998763
No 247
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=21.16 E-value=1.5e+02 Score=20.78 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Q 036599 56 EDAITYIRQLKGRVLFLCDQVLQVE 80 (189)
Q Consensus 56 ~dAI~YIk~Lq~kv~~Le~~~~~l~ 80 (189)
.-|=+-|-++|.++++|+.++.+++
T Consensus 11 eK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 11 EKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355667788888888888886553
No 248
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=21.13 E-value=1.3e+02 Score=18.81 Aligned_cols=9 Identities=33% Similarity=0.187 Sum_probs=3.3
Q ss_pred HHHHHHHhc
Q 036599 40 DRLLKLRSL 48 (189)
Q Consensus 40 ~~f~~LRsl 48 (189)
.+..+=++-
T Consensus 12 Nr~AA~r~R 20 (54)
T PF07716_consen 12 NREAARRSR 20 (54)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 249
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=20.94 E-value=1.3e+02 Score=21.66 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhc----ccccchH-------HHHHHHHHHHHH
Q 036599 28 LEAERRRRQKLNDRLLKLRSL----MKKETVI-------EDAITYIRQLKG 67 (189)
Q Consensus 28 ~~~ER~RR~kln~~f~~LRsl----~DKaSIl-------~dAI~YIk~Lq~ 67 (189)
....+.||.++.=.|..|+.. ..+..|+ .-|-+||+.|.+
T Consensus 7 ~~~~~~rR~R~eIi~dIL~~~~~~~~~~Tri~y~aNlny~~~~~yi~~L~~ 57 (95)
T COG3432 7 SSMVRKRRSRLEIIFDILKAISEGGIGITRIIYGANLNYKRAQKYIEMLVE 57 (95)
T ss_pred cchhhhcchHHHHHHHHHHHhcCCCCCceeeeeecCcCHHHHHHHHHHHHh
Confidence 345678888899999999966 3333332 557788887754
No 250
>PRK03762 hypothetical protein; Provisional
Probab=20.92 E-value=3.4e+02 Score=19.71 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 036599 56 EDAITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 56 ~dAI~YIk~Lq~kv~~Le~~~~~ 78 (189)
+.-..-.+++|+++++++.+...
T Consensus 8 ~~m~kqaqkmQ~km~~~Q~el~~ 30 (103)
T PRK03762 8 SKLGEMLEQMQKKAKQLEEENAN 30 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445577788888888887754
No 251
>PRK14630 hypothetical protein; Provisional
Probab=20.91 E-value=3.9e+02 Score=20.42 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=31.3
Q ss_pred HHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCcc-ccCHHHHHHHHHHHHh
Q 036599 135 VEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDR-IIRVEETRELLLKIIR 187 (189)
Q Consensus 135 l~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~-~~s~~~lk~~L~~~i~ 187 (189)
-..++++|+++..+....-++..+..+.+. . .++- .-+++.+.++|...+.
T Consensus 15 ~~~~~~~G~eLvdve~~~~~~~~~lrV~Id-~-~~gV~idDC~~vSr~i~~~ld 66 (143)
T PRK14630 15 KNVTDRLGIEIIEINTFRNRNEGKIQIVLY-K-KDSFGVDTLCDLHKMILLILE 66 (143)
T ss_pred HHHHHHcCCEEEEEEEEecCCCcEEEEEEE-C-CCCCCHHHHHHHHHHHHHHhc
Confidence 344799999999999888655443344444 2 2222 2256667777765553
No 252
>PRK14632 hypothetical protein; Provisional
Probab=20.89 E-value=4.2e+02 Score=20.90 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=30.6
Q ss_pred HHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 137 AMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 137 aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
+++++|+++..+.+...+..++ .+.+. ..++=..-+++.+.++|..++.
T Consensus 17 v~~~~G~eLvdve~~~~~~~~l-rV~ID-~~~GV~ldDC~~vSr~is~~LD 65 (172)
T PRK14632 17 FLASLGLELWGIELSYGGRTVV-RLFVD-GPEGVTIDQCAEVSRHVGLALE 65 (172)
T ss_pred HHHHCCCEEEEEEEEeCCCcEE-EEEEE-CCCCCCHHHHHHHHHHHHHHhc
Confidence 4689999999999886444333 44444 2222112366777777777664
No 253
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=20.68 E-value=2.2e+02 Score=19.73 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHhCCCeEEEEE
Q 036599 129 GNFTKLVEAMNALGFVFGDTS 149 (189)
Q Consensus 129 g~l~~il~aLe~l~L~V~~a~ 149 (189)
.-|++|-++|++-|.+|+...
T Consensus 8 ~~Ls~v~~~L~~~GyeVv~l~ 28 (80)
T PF03698_consen 8 EGLSNVKEALREKGYEVVDLE 28 (80)
T ss_pred CCchHHHHHHHHCCCEEEecC
Confidence 468899999999999998766
No 254
>PRK08210 aspartate kinase I; Reviewed
Probab=20.60 E-value=3.9e+02 Score=23.64 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=30.5
Q ss_pred CceEEEEEEeCCC-CChHHHHHHHHHhCCCeEEEEEEE
Q 036599 115 GNKLRINIIFGKK-RGNFTKLVEAMNALGFVFGDTSVT 151 (189)
Q Consensus 115 ~~~v~I~i~c~~~-~g~l~~il~aLe~l~L~V~~a~is 151 (189)
.+...|++..... +|.+.+|+.+|.+.|+.|.....+
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 4567888887665 999999999999999998887544
No 255
>PRK06835 DNA replication protein DnaC; Validated
Probab=20.41 E-value=1.1e+02 Score=26.82 Aligned_cols=47 Identities=9% Similarity=0.254 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhc----------ccccchHHHH--HHHHHHHHHHHHHHHhhhhhh
Q 036599 33 RRRQKLNDRLLKLRSL----------MKKETVIEDA--ITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 33 ~RR~kln~~f~~LRsl----------~DKaSIl~dA--I~YIk~Lq~kv~~Le~~~~~l 79 (189)
+|++++-.++=.|+.+ .-|+.+-+++ =..+.+|++++++|..++..+
T Consensus 26 ~r~~e~~~~~P~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~l 84 (329)
T PRK06835 26 NRKEEVYKKIPEIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAEL 84 (329)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777 2233332332 678899999999999998765
No 256
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=20.34 E-value=70 Score=21.43 Aligned_cols=20 Identities=15% Similarity=0.419 Sum_probs=15.9
Q ss_pred CCCChHHHHHHHHHhCCCeE
Q 036599 126 KKRGNFTKLVEAMNALGFVF 145 (189)
Q Consensus 126 ~~~g~l~~il~aLe~l~L~V 145 (189)
+....+.++..+|+++|++|
T Consensus 56 Rt~~~~~Dv~~al~~~gi~v 75 (77)
T PF07524_consen 56 RTEPNLQDVEQALEEMGISV 75 (77)
T ss_pred CCCCCHHHHHHHHHHhCCCC
Confidence 34456899999999999876
No 257
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=20.29 E-value=1.1e+02 Score=25.52 Aligned_cols=35 Identities=9% Similarity=0.281 Sum_probs=26.8
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe
Q 036599 120 INIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGA 156 (189)
Q Consensus 120 I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~ 156 (189)
+.+.|+ |.-|..+..+|++.|++|.++.+.-.-..
T Consensus 167 ~~~~c~--p~~~~~v~~~L~~~g~~i~~~e~~~~P~~ 201 (234)
T PF01709_consen 167 FEFICD--PSDLSAVKKALEKKGYEIESAELEYIPNN 201 (234)
T ss_dssp EEEEEE--GGGHHHHHHHHHHTT---SEEEEEEEESS
T ss_pred EEEEEC--HHHHHHHHHHHHHcCCCeeEEEEEEeCCC
Confidence 888887 67899999999999999999888765444
No 258
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=20.23 E-value=1.1e+02 Score=25.84 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHH
Q 036599 38 LNDRLLKLRSLMKKETVIEDAITYIRQLK 66 (189)
Q Consensus 38 ln~~f~~LRsl~DKaSIl~dAI~YIk~Lq 66 (189)
+|.+|..|+.|+|...-+..-++-|+.|+
T Consensus 221 lnah~~sLqwl~d~st~~e~k~d~i~K~~ 249 (254)
T KOG2196|consen 221 LNAHMDSLQWLDDNSTQLEKKLDKIKKLK 249 (254)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 44555555555555555555555444443
Done!