Query 036599
Match_columns 189
No_of_seqs 112 out of 1036
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 05:24:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 5.4E-16 1.8E-20 108.4 6.8 60 21-80 4-70 (82)
2 1hlo_A Protein (transcription 99.5 3.5E-14 1.2E-18 98.7 6.8 61 20-80 9-77 (80)
3 1nkp_B MAX protein, MYC proto- 99.5 4.5E-14 1.5E-18 98.7 6.8 57 24-80 3-67 (83)
4 4h10_B Circadian locomoter out 99.5 5.3E-14 1.8E-18 95.4 5.6 54 20-73 5-65 (71)
5 1nkp_A C-MYC, MYC proto-oncoge 99.5 9.1E-14 3.1E-18 98.3 6.7 59 21-79 4-71 (88)
6 4ati_A MITF, microphthalmia-as 99.4 2E-13 6.9E-18 101.4 6.3 56 22-77 26-91 (118)
7 1a0a_A BHLH, protein (phosphat 99.4 8.9E-14 3E-18 92.4 2.9 46 24-69 3-61 (63)
8 1an4_A Protein (upstream stimu 99.4 8.1E-14 2.8E-18 93.1 1.5 47 23-69 5-63 (65)
9 1nlw_A MAD protein, MAX dimeri 99.4 9.5E-13 3.3E-17 91.4 6.7 56 24-79 2-66 (80)
10 4h10_A ARYL hydrocarbon recept 99.4 4E-13 1.4E-17 91.7 4.5 48 20-67 6-63 (73)
11 3u5v_A Protein MAX, transcript 99.3 3.9E-12 1.3E-16 87.4 5.2 53 22-74 4-66 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.0 1.1E-10 3.7E-15 78.5 3.8 51 20-70 9-67 (68)
13 2ql2_B Neurod1, neurogenic dif 98.9 1.2E-09 4.3E-14 71.6 4.7 47 24-70 3-58 (60)
14 4f3l_A Mclock, circadian locom 98.7 8.2E-09 2.8E-13 89.0 4.2 50 20-69 9-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 2E-08 6.8E-13 87.5 5.0 50 19-68 9-68 (387)
16 2lfh_A DNA-binding protein inh 98.2 1.9E-07 6.3E-12 62.3 0.2 39 29-67 20-67 (68)
17 1zpv_A ACT domain protein; str 97.8 0.00058 2E-08 46.7 11.8 67 116-186 4-70 (91)
18 4ath_A MITF, microphthalmia-as 97.8 3.1E-05 1.1E-09 53.5 4.7 43 35-77 4-56 (83)
19 4aya_A DNA-binding protein inh 97.3 0.0003 1E-08 49.9 4.8 42 30-71 32-82 (97)
20 1u8s_A Glycine cleavage system 97.3 0.0018 6.3E-08 50.5 9.8 66 116-186 5-70 (192)
21 2nyi_A Unknown protein; protei 97.3 0.0015 5.2E-08 51.4 9.2 68 116-184 4-71 (195)
22 2nyi_A Unknown protein; protei 96.7 0.0086 2.9E-07 47.0 9.1 67 116-187 92-164 (195)
23 2ko1_A CTR148A, GTP pyrophosph 96.7 0.019 6.6E-07 38.3 9.7 48 117-164 5-52 (88)
24 1u8s_A Glycine cleavage system 96.5 0.032 1.1E-06 43.3 11.1 68 116-187 92-167 (192)
25 3o1l_A Formyltetrahydrofolate 96.0 0.055 1.9E-06 45.6 10.6 68 115-185 20-89 (302)
26 3p96_A Phosphoserine phosphata 95.9 0.033 1.1E-06 48.0 9.1 68 116-186 11-78 (415)
27 3obi_A Formyltetrahydrofolate 95.7 0.086 2.9E-06 44.1 10.4 69 115-186 4-74 (288)
28 3lou_A Formyltetrahydrofolate 95.4 0.1 3.6E-06 43.7 9.8 70 115-185 8-79 (292)
29 3n0v_A Formyltetrahydrofolate 95.4 0.13 4.5E-06 42.9 10.3 67 116-186 7-75 (286)
30 2f1f_A Acetolactate synthase i 94.4 0.094 3.2E-06 40.4 6.4 66 118-186 4-69 (164)
31 3nrb_A Formyltetrahydrofolate 93.9 0.3 1E-05 40.7 9.0 65 116-185 6-72 (287)
32 2pc6_A Probable acetolactate s 93.4 0.12 4E-06 39.9 5.2 64 118-186 5-70 (165)
33 2fgc_A Acetolactate synthase, 93.2 0.24 8.3E-06 39.1 6.8 65 118-187 30-96 (193)
34 2jhe_A Transcription regulator 92.1 0.45 1.6E-05 35.3 6.9 37 119-156 2-38 (190)
35 1y7p_A Hypothetical protein AF 89.4 1 3.5E-05 36.2 6.9 61 117-184 4-69 (223)
36 2qmx_A Prephenate dehydratase; 79.0 8.7 0.0003 31.8 8.2 63 119-185 202-265 (283)
37 3mwb_A Prephenate dehydratase; 75.3 12 0.00041 31.4 8.2 65 117-185 201-267 (313)
38 1dh3_A Transcription factor CR 74.3 4.6 0.00016 25.1 4.1 40 33-79 2-41 (55)
39 2f06_A Conserved hypothetical 72.7 18 0.00061 25.9 7.7 38 118-155 7-44 (144)
40 2oqq_A Transcription factor HY 72.5 3 0.0001 24.6 2.6 22 60-81 3-24 (42)
41 2l5g_A GPS2 protein, G protein 72.0 4.8 0.00016 23.1 3.3 29 51-79 6-34 (38)
42 3luy_A Probable chorismate mut 71.1 31 0.0011 29.1 9.8 56 126-185 217-273 (329)
43 2er8_A Regulatory protein Leu3 70.3 3.1 0.00011 26.6 2.7 22 59-80 48-69 (72)
44 2re1_A Aspartokinase, alpha an 68.0 16 0.00054 27.1 6.7 50 115-164 23-74 (167)
45 2f06_A Conserved hypothetical 67.7 30 0.001 24.6 9.2 56 120-184 75-130 (144)
46 2wt7_A Proto-oncogene protein 66.1 13 0.00046 23.4 5.1 42 31-79 1-42 (63)
47 2qmw_A PDT, prephenate dehydra 66.0 18 0.00063 29.5 7.1 62 119-185 188-253 (267)
48 3he4_B Synzip5; heterodimeric 64.9 9.7 0.00033 22.1 3.7 25 55-79 5-29 (46)
49 1zme_C Proline utilization tra 63.0 4.5 0.00015 25.5 2.3 21 60-80 44-64 (70)
50 1hwt_C Protein (heme activator 60.5 5 0.00017 26.1 2.2 22 59-80 57-78 (81)
51 2dtj_A Aspartokinase; protein- 60.4 47 0.0016 24.8 8.1 39 115-153 13-52 (178)
52 2dt9_A Aspartokinase; protein- 58.8 40 0.0014 24.8 7.4 50 115-164 14-67 (167)
53 1gd2_E Transcription factor PA 57.1 8.4 0.00029 25.2 2.8 20 59-78 28-47 (70)
54 3ab4_A Aspartokinase; aspartat 55.3 81 0.0028 27.0 9.7 50 115-164 262-315 (421)
55 2re1_A Aspartokinase, alpha an 55.1 60 0.002 23.9 9.1 46 115-164 101-149 (167)
56 2rp4_A Transcription factor P5 50.2 12 0.00041 24.7 2.7 36 105-140 9-44 (76)
57 1phz_A Protein (phenylalanine 47.5 24 0.00083 30.9 5.0 63 118-185 35-98 (429)
58 1g70_B RSG-1.2 peptide; peptid 47.2 12 0.00042 19.1 1.8 8 30-37 12-19 (26)
59 2akf_A Coronin-1A; coiled coil 47.0 16 0.00056 19.8 2.4 16 61-76 14-29 (32)
60 2dtj_A Aspartokinase; protein- 46.5 88 0.003 23.2 8.0 46 115-164 93-141 (178)
61 1pyi_A Protein (pyrimidine pat 46.4 17 0.0006 24.2 3.3 23 59-81 47-69 (96)
62 3s1t_A Aspartokinase; ACT doma 45.4 95 0.0032 23.3 8.8 50 115-164 14-67 (181)
63 2jee_A YIIU; FTSZ, septum, coi 44.0 26 0.0009 23.5 3.7 25 55-79 15-39 (81)
64 4go7_X Aspartokinase; transfer 42.3 60 0.002 25.2 6.2 50 115-164 33-86 (200)
65 2dt9_A Aspartokinase; protein- 42.2 98 0.0034 22.6 8.5 46 115-164 93-141 (167)
66 2jqq_A Conserved oligomeric go 41.3 22 0.00075 27.9 3.4 47 29-75 46-98 (204)
67 2ke4_A CDC42-interacting prote 41.0 76 0.0026 21.9 5.9 57 23-80 6-89 (98)
68 1jnm_A Proto-oncogene C-JUN; B 40.2 23 0.00078 22.2 2.8 20 60-79 22-41 (62)
69 2dgc_A Protein (GCN4); basic d 40.1 23 0.00079 22.4 2.8 33 40-79 17-49 (63)
70 2dnr_A Synaptojanin-1; RRM dom 39.2 45 0.0015 22.8 4.4 38 115-153 7-50 (91)
71 3s1t_A Aspartokinase; ACT doma 38.7 1.2E+02 0.0042 22.7 8.0 46 115-164 94-142 (181)
72 2lqj_A Mg2+ transport protein; 38.5 90 0.0031 21.1 6.8 39 116-154 7-47 (94)
73 3fx7_A Putative uncharacterize 38.4 62 0.0021 22.3 5.0 41 35-77 47-87 (94)
74 1xkm_B Distinctin chain B; por 38.2 33 0.0011 17.5 2.7 19 53-71 4-22 (26)
75 3coq_A Regulatory protein GAL4 36.9 26 0.00088 22.8 2.8 22 59-80 44-65 (89)
76 1rwu_A Hypothetical UPF0250 pr 35.2 1E+02 0.0034 21.6 5.9 48 116-164 35-85 (109)
77 1kd8_B GABH BLL, GCN4 acid bas 34.8 28 0.00097 19.6 2.3 18 62-79 3-20 (36)
78 3k29_A Putative uncharacterize 34.6 1.1E+02 0.0039 23.2 6.4 54 25-78 39-96 (169)
79 1t2k_D Cyclic-AMP-dependent tr 34.0 33 0.0011 21.3 2.8 20 60-79 22-41 (61)
80 1g1e_B SIN3A; four-helix bundl 33.0 26 0.0009 23.7 2.4 18 54-71 9-26 (89)
81 1e91_A Paired amphipathic heli 31.6 29 0.00099 23.2 2.4 19 53-71 5-23 (85)
82 2xze_Q Charged multivesicular 31.0 23 0.0008 20.6 1.5 12 36-47 29-40 (40)
83 2wq1_A General control protein 31.0 37 0.0013 18.8 2.3 18 62-79 2-19 (33)
84 1d66_A Protein (GAL4); protein 29.6 14 0.00047 22.7 0.4 15 59-73 51-65 (66)
85 4abx_A DNA repair protein RECN 28.9 1.1E+02 0.0039 22.7 5.7 45 33-77 122-167 (175)
86 3mtj_A Homoserine dehydrogenas 28.7 58 0.002 28.4 4.5 63 116-185 358-423 (444)
87 1kd8_A GABH AIV, GCN4 acid bas 27.2 30 0.001 19.6 1.5 18 62-79 3-20 (36)
88 2p4r_T E3 ubiquitin-protein li 27.0 24 0.00081 18.6 1.0 9 1-9 13-21 (26)
89 2rrl_A FLIK, flagellar HOOK-le 26.8 1.6E+02 0.0053 22.4 6.0 47 106-153 101-153 (169)
90 2czy_A Paired amphipathic heli 26.0 43 0.0015 21.9 2.4 17 55-71 4-20 (77)
91 2f05_A Paired amphipathic heli 25.1 43 0.0015 23.4 2.4 17 55-71 7-23 (105)
92 3ab4_A Aspartokinase; aspartat 25.1 3.1E+02 0.011 23.2 9.2 46 115-164 342-390 (421)
93 1ybx_A Conserved hypothetical 24.9 1.7E+02 0.0057 21.6 5.7 26 55-80 43-68 (143)
94 3c3g_A Alpha/beta peptide with 24.6 56 0.0019 18.1 2.3 18 62-79 2-19 (33)
95 3azd_A Short alpha-tropomyosin 24.5 33 0.0011 19.4 1.4 22 58-79 2-23 (37)
96 2x3d_A SSO6206; unknown functi 24.3 1.8E+02 0.0061 20.0 7.0 44 106-149 36-79 (96)
97 3c1m_A Probable aspartokinase; 23.4 2E+02 0.0069 24.9 7.0 48 115-164 316-366 (473)
98 2raq_A Conserved protein MTH88 22.6 1.9E+02 0.0066 19.9 7.2 45 105-149 36-80 (97)
99 3bpd_A Uncharacterized protein 21.8 2E+02 0.007 19.9 5.6 44 106-149 37-80 (100)
100 3i00_A HIP-I, huntingtin-inter 21.2 95 0.0033 22.2 3.6 27 52-78 32-58 (120)
101 3axj_B TRAX, translin associat 20.7 2E+02 0.0067 23.6 6.0 51 26-76 39-105 (298)
102 2wuj_A Septum site-determining 20.3 1.2E+02 0.0041 18.5 3.5 27 54-80 28-54 (57)
103 3mah_A Aspartokinase; aspartat 20.0 2.5E+02 0.0084 20.1 6.2 60 115-185 86-148 (157)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.63 E-value=5.4e-16 Score=108.42 Aligned_cols=60 Identities=28% Similarity=0.466 Sum_probs=56.1
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHhc-------ccccchHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 036599 21 AVYKSKNLEAERRRRQKLNDRLLKLRSL-------MKKETVIEDAITYIRQLKGRVLFLCDQVLQVE 80 (189)
Q Consensus 21 ~~~~~~h~~~ER~RR~kln~~f~~LRsl-------~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l~ 80 (189)
...+..|+.+||+||.+||+.|..|++| +||++||.+||+||++||.+++.|+.+...+.
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999 89999999999999999999999999987764
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=3.5e-14 Score=98.65 Aligned_cols=61 Identities=18% Similarity=0.343 Sum_probs=56.1
Q ss_pred chhhhhhchHHHHHHHHHHHHHHHHHHhc--------ccccchHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 036599 20 KAVYKSKNLEAERRRRQKLNDRLLKLRSL--------MKKETVIEDAITYIRQLKGRVLFLCDQVLQVE 80 (189)
Q Consensus 20 ~~~~~~~h~~~ER~RR~kln~~f~~LRsl--------~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l~ 80 (189)
....+..|+..||+||..||+.|..|+++ ++|++||..||+||+.|++++++|+.+...+.
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999 78999999999999999999999999987653
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.49 E-value=4.5e-14 Score=98.71 Aligned_cols=57 Identities=18% Similarity=0.379 Sum_probs=53.1
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhc--------ccccchHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 036599 24 KSKNLEAERRRRQKLNDRLLKLRSL--------MKKETVIEDAITYIRQLKGRVLFLCDQVLQVE 80 (189)
Q Consensus 24 ~~~h~~~ER~RR~kln~~f~~LRsl--------~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l~ 80 (189)
+..|+..||+||..||+.|..|+++ ++|++||.+||+||+.|+.++++|+.++..+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999 79999999999999999999999998887653
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.47 E-value=5.3e-14 Score=95.43 Aligned_cols=54 Identities=26% Similarity=0.437 Sum_probs=49.7
Q ss_pred chhhhhhchHHHHHHHHHHHHHHHHHHhc-------ccccchHHHHHHHHHHHHHHHHHHH
Q 036599 20 KAVYKSKNLEAERRRRQKLNDRLLKLRSL-------MKKETVIEDAITYIRQLKGRVLFLC 73 (189)
Q Consensus 20 ~~~~~~~h~~~ER~RR~kln~~f~~LRsl-------~DKaSIl~dAI~YIk~Lq~kv~~Le 73 (189)
....+.+|+.+||+||++||+.|..|++| +||++||..||+||+.||..+.=|+
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34567899999999999999999999999 8999999999999999999987664
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=9.1e-14 Score=98.26 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=53.3
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHhc---------ccccchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 21 AVYKSKNLEAERRRRQKLNDRLLKLRSL---------MKKETVIEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 21 ~~~~~~h~~~ER~RR~kln~~f~~LRsl---------~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
...+..|+..||+||..||+.|..||++ ++|++||.+||+||++|+.+.+.|+.++..+
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999 7899999999999999999999888776544
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.42 E-value=2e-13 Score=101.44 Aligned_cols=56 Identities=32% Similarity=0.412 Sum_probs=48.0
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHhc----------ccccchHHHHHHHHHHHHHHHHHHHhhhh
Q 036599 22 VYKSKNLEAERRRRQKLNDRLLKLRSL----------MKKETVIEDAITYIRQLKGRVLFLCDQVL 77 (189)
Q Consensus 22 ~~~~~h~~~ER~RR~kln~~f~~LRsl----------~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~ 77 (189)
..+..|+.+||+||.+||+.|..|++| +||++||.+||+||+.||.+++.|+....
T Consensus 26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999 46999999999999999999999987654
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.40 E-value=8.9e-14 Score=92.44 Aligned_cols=46 Identities=37% Similarity=0.495 Sum_probs=42.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhc------cc-------ccchHHHHHHHHHHHHHHH
Q 036599 24 KSKNLEAERRRRQKLNDRLLKLRSL------MK-------KETVIEDAITYIRQLKGRV 69 (189)
Q Consensus 24 ~~~h~~~ER~RR~kln~~f~~LRsl------~D-------KaSIl~dAI~YIk~Lq~kv 69 (189)
+.+|..+||+||.+||..|..|++| .| ||+||..||+||+.||+++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999 34 9999999999999999765
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.38 E-value=8.1e-14 Score=93.08 Aligned_cols=47 Identities=30% Similarity=0.552 Sum_probs=43.3
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHhc------------ccccchHHHHHHHHHHHHHHH
Q 036599 23 YKSKNLEAERRRRQKLNDRLLKLRSL------------MKKETVIEDAITYIRQLKGRV 69 (189)
Q Consensus 23 ~~~~h~~~ER~RR~kln~~f~~LRsl------------~DKaSIl~dAI~YIk~Lq~kv 69 (189)
.+..|+.+||+||.+||+.|..|++| +||++||.+||+||++||++.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999 389999999999999999764
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.37 E-value=9.5e-13 Score=91.42 Aligned_cols=56 Identities=27% Similarity=0.287 Sum_probs=51.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhc---------ccccchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 24 KSKNLEAERRRRQKLNDRLLKLRSL---------MKKETVIEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 24 ~~~h~~~ER~RR~kln~~f~~LRsl---------~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
+..|+..||+||..||+.|..|+++ +.|++||..|++||+.|+++.+.|+.++..+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999 5678899999999999999999999888765
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.37 E-value=4e-13 Score=91.73 Aligned_cols=48 Identities=31% Similarity=0.454 Sum_probs=44.2
Q ss_pred chhhhhhchHHHHHHHHHHHHHHHHHHhc----------ccccchHHHHHHHHHHHHH
Q 036599 20 KAVYKSKNLEAERRRRQKLNDRLLKLRSL----------MKKETVIEDAITYIRQLKG 67 (189)
Q Consensus 20 ~~~~~~~h~~~ER~RR~kln~~f~~LRsl----------~DKaSIl~dAI~YIk~Lq~ 67 (189)
....+..|..+||+||++||+.|..|++| +|||+||..||+||+.|+.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 34567899999999999999999999999 6999999999999999974
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.27 E-value=3.9e-12 Score=87.42 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=43.6
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHhc------ccc----cchHHHHHHHHHHHHHHHHHHHh
Q 036599 22 VYKSKNLEAERRRRQKLNDRLLKLRSL------MKK----ETVIEDAITYIRQLKGRVLFLCD 74 (189)
Q Consensus 22 ~~~~~h~~~ER~RR~kln~~f~~LRsl------~DK----aSIl~dAI~YIk~Lq~kv~~Le~ 74 (189)
..+..|+..||+||..||+.|..||.+ .|| .+||..||+||+.||+++++++.
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999 344 46999999999999999998854
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.05 E-value=1.1e-10 Score=78.53 Aligned_cols=51 Identities=27% Similarity=0.391 Sum_probs=45.6
Q ss_pred chhhhhhchHHHHHHHHHHHHHHHHHHhc--------ccccchHHHHHHHHHHHHHHHH
Q 036599 20 KAVYKSKNLEAERRRRQKLNDRLLKLRSL--------MKKETVIEDAITYIRQLKGRVL 70 (189)
Q Consensus 20 ~~~~~~~h~~~ER~RR~kln~~f~~LRsl--------~DKaSIl~dAI~YIk~Lq~kv~ 70 (189)
....+..|+..||+|+..||+.|..||.+ +.|+.||..||+||..|++.++
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 45567889999999999999999999999 6788899999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.91 E-value=1.2e-09 Score=71.59 Aligned_cols=47 Identities=30% Similarity=0.316 Sum_probs=42.8
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhc---------ccccchHHHHHHHHHHHHHHHH
Q 036599 24 KSKNLEAERRRRQKLNDRLLKLRSL---------MKKETVIEDAITYIRQLKGRVL 70 (189)
Q Consensus 24 ~~~h~~~ER~RR~kln~~f~~LRsl---------~DKaSIl~dAI~YIk~Lq~kv~ 70 (189)
+..|+..||+|+..||+.|..||.+ +.|..+|..||+||..|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999998 6788899999999999998763
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.70 E-value=8.2e-09 Score=89.02 Aligned_cols=50 Identities=26% Similarity=0.464 Sum_probs=38.0
Q ss_pred chhhhhhchHHHHHHHHHHHHHHHHHHhc-------ccccchHHHHHHHHHHHHHHH
Q 036599 20 KAVYKSKNLEAERRRRQKLNDRLLKLRSL-------MKKETVIEDAITYIRQLKGRV 69 (189)
Q Consensus 20 ~~~~~~~h~~~ER~RR~kln~~f~~LRsl-------~DKaSIl~dAI~YIk~Lq~kv 69 (189)
....+..|+.+||+||++||..|..|++| +||+|||..||+||+.|+..-
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 34567889999999999999999999999 899999999999999998653
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.64 E-value=2e-08 Score=87.55 Aligned_cols=50 Identities=30% Similarity=0.430 Sum_probs=44.5
Q ss_pred cchhhhhhchHHHHHHHHHHHHHHHHHHhc----------ccccchHHHHHHHHHHHHHH
Q 036599 19 DKAVYKSKNLEAERRRRQKLNDRLLKLRSL----------MKKETVIEDAITYIRQLKGR 68 (189)
Q Consensus 19 ~~~~~~~~h~~~ER~RR~kln~~f~~LRsl----------~DKaSIl~dAI~YIk~Lq~k 68 (189)
+....+.+|..+||+||++||..|..|++| +||+|||..||+||+.|+..
T Consensus 9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 335568899999999999999999999999 89999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.21 E-value=1.9e-07 Score=62.28 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc---------ccccchHHHHHHHHHHHHH
Q 036599 29 EAERRRRQKLNDRLLKLRSL---------MKKETVIEDAITYIRQLKG 67 (189)
Q Consensus 29 ~~ER~RR~kln~~f~~LRsl---------~DKaSIl~dAI~YIk~Lq~ 67 (189)
..||+|...||+-|..||.+ +.|.-+|.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 45899999999999999999 5778899999999999984
No 17
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.79 E-value=0.00058 Score=46.71 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=56.1
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
..+.|.+.|+++||++.+|..+|.+.|..|.+.+.....+.+.-.+.++. . + ....+.|.++|.++-
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~-~-~--~~~l~~l~~~L~~~~ 70 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS-D-E--KQDFTYLRNEFEAFG 70 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-S-S--CCCHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEe-C-C--CCCHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999988887766677763 2 2 457889999988764
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.76 E-value=3.1e-05 Score=53.46 Aligned_cols=43 Identities=30% Similarity=0.434 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhc----------ccccchHHHHHHHHHHHHHHHHHHHhhhh
Q 036599 35 RQKLNDRLLKLRSL----------MKKETVIEDAITYIRQLKGRVLFLCDQVL 77 (189)
Q Consensus 35 R~kln~~f~~LRsl----------~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~ 77 (189)
|..||+++..|.+| ..|++||.-|++||+.||+..+.+..+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999 56999999999999999987777665543
No 19
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.30 E-value=0.0003 Score=49.90 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhc---------ccccchHHHHHHHHHHHHHHHHH
Q 036599 30 AERRRRQKLNDRLLKLRSL---------MKKETVIEDAITYIRQLKGRVLF 71 (189)
Q Consensus 30 ~ER~RR~kln~~f~~LRsl---------~DKaSIl~dAI~YIk~Lq~kv~~ 71 (189)
.||.|=..||+-|..||.+ ..|.-+|.-||+||..|++-+++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3577778999999999999 56778999999999999988754
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.28 E-value=0.0018 Score=50.49 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=54.6
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
..+.|.|.|+++||++..|..+|.+.|++|..+++.+..+.++-.+.+.. + ....+.|+++|..+.
T Consensus 5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~---~--~~~~~~l~~~L~~~~ 70 (192)
T 1u8s_A 5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG---S--PSNITRVETTLPLLG 70 (192)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE---C--HHHHHHHHHHHHHHH
T ss_pred cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec---C--CCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999998888766666662 2 135678888887654
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.27 E-value=0.0015 Score=51.41 Aligned_cols=68 Identities=9% Similarity=0.093 Sum_probs=50.7
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
..+.|.|.|+++||++..|..+|.++|+.|+.+.+.+..+.++-.+.+. ....+.....+.|+++|..
T Consensus 4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~-~~~~~~~~~~~~l~~~L~~ 71 (195)
T 2nyi_A 4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVS-LNAKDGKLIQSALESALPG 71 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE-ESSSSSHHHHHHHHHHSTT
T ss_pred eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEE-ecCccchhHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999888775566665 2211000115666666643
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.72 E-value=0.0086 Score=47.01 Aligned_cols=67 Identities=10% Similarity=0.018 Sum_probs=52.9
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC------CeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK------GATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~------~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
..+.|.|.|+++||++..|..+|-++|+.|..+...+.+ +.|+-.+.+... + ..+ +.|+++|..+..
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~--~--~~~-~~l~~~l~~~a~ 164 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP--F--PLY-QEVVTALSRVEE 164 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE--G--GGH-HHHHHHHHHHHH
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC--C--Ccc-HHHHHHHHHHHH
Confidence 458999999999999999999999999999999999876 555444544422 1 345 889998887654
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.71 E-value=0.019 Score=38.32 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=39.6
Q ss_pred eEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 117 KLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 117 ~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.+.|.|.++++||+|.+|..+|.+.|+.|.+.+....++.+...|.++
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~ 52 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF 52 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEE
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEE
Confidence 467889999999999999999999999999999988776333344444
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.52 E-value=0.032 Score=43.30 Aligned_cols=68 Identities=9% Similarity=0.018 Sum_probs=53.2
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--------CeEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK--------GATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~--------~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
..+.|.+.|++++|++..|..+|.+.|++|..+...+.+ +.|+-.+.+. . . ...+.+.|+++|..+..
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~-~-~--~~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISAR-V-D--SGCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEE-E-C--TTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEe-C-C--CCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999998764 2443334443 2 2 25688999999987654
No 25
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.04 E-value=0.055 Score=45.64 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=53.4
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL--KGATLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~--~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
...+.+.+.|++++|+...|...|-+.|..|+.++-+.. +|.|+-.+.+. ..+...+.++|+++|..+
T Consensus 20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~---~~~~~~~~~~L~~~l~~l 89 (302)
T 3o1l_A 20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIR---ADTLPFDLDGFREAFTPI 89 (302)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEE---GGGSSSCHHHHHHHHHHH
T ss_pred cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEe---cCCCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999999999998864 66664334343 122247899999998754
No 26
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=95.94 E-value=0.033 Score=48.04 Aligned_cols=68 Identities=10% Similarity=0.064 Sum_probs=55.3
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
..+.|++.|+++||+...|...|-+.|..|+.++-...++.|+-.+.+... +...+.+.|+++|..+-
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~---~~~~~~~~l~~~l~~~~ 78 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP---ADVADGPALRHDVEAAI 78 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC---HHHHTSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec---CCcCCHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999988656666522 11335688888887653
No 27
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=95.71 E-value=0.086 Score=44.09 Aligned_cols=69 Identities=12% Similarity=0.119 Sum_probs=53.6
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT--LKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~--~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
...+.+.+.|++++|+...|...|-+.|+.|..++-.+ .+|.|+-.+.+.. .+...+.++|+++|..+-
T Consensus 4 ~~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~---~~~~~~~~~L~~~f~~la 74 (288)
T 3obi_A 4 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA---AAKVIPLASLRTGFGVIA 74 (288)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE---SSCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc---CCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999999999999999998863 4666654455542 122478999999987653
No 28
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=95.39 E-value=0.1 Score=43.67 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=52.0
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 115 GNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT--LKGATLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 115 ~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~--~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
...+.+.+.|++++|+...|...|-+.|+.|..++-.+ .+|.|+-.+.+... .++...+.++|+++|..+
T Consensus 8 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~~~~~~~~~~L~~~f~~l 79 (292)
T 3lou_A 8 PHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHAT-DDADALRVDALRREFEPI 79 (292)
T ss_dssp CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEEC-C----CCHHHHHHHHHHH
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEcc-CcccCCCHHHHHHHHHHH
Confidence 34688999999999999999999999999999999884 56666534444321 002246789999988654
No 29
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=95.36 E-value=0.13 Score=42.93 Aligned_cols=67 Identities=7% Similarity=-0.050 Sum_probs=52.7
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT--LKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~--~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
..+.+.+.|++++|+...|...|-+.|+.|..++-++ .++.|+-.+.+. .++ ..+.++|+++|..+-
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~---~~~-~~~~~~L~~~f~~la 75 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFR---QPD-DFDEAGFRAGLAERS 75 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE---CCS-SCCHHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEe---cCC-CCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999883 566664334443 122 478999999987653
No 30
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=94.41 E-value=0.094 Score=40.37 Aligned_cols=66 Identities=14% Similarity=0.308 Sum_probs=47.2
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
..|.|..+++||+|.+|...|...|+.|.+.++....+.-+..+++.+. ++ .-..+.|...|.+++
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d--~~~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GD--EKVLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SC--HHHHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-cc--HHHHHHHHHHHcCCC
Confidence 4678888999999999999999999999999998765422234444422 33 345666666666543
No 31
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=93.90 E-value=0.3 Score=40.75 Aligned_cols=65 Identities=9% Similarity=0.063 Sum_probs=47.8
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTT--LKGATLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~--~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
..+.+.+.|++++|+...|...|-+.|..|..++-.. .+|.|+-.+.+. .+ ..+..+|+++|..+
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~---~~--~~~~~~L~~~f~~l 72 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVE---IP--VAGVNDFNSAFGKV 72 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE---CC--C---CHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEE---cC--CCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999998863 466664333333 12 13345888888654
No 32
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=93.40 E-value=0.12 Score=39.91 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=47.8
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEeeeCCccccCHHHHHHHHHHHH
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK--GATLFSSVLEGTHGGDRIIRVEETRELLLKII 186 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~--~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i 186 (189)
..|.|..+++||+|.+|...|...|+.|.+.++.... +...-+|.+. ++ .-..+.|...|.+++
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~---~d--~~~leql~kQL~Kl~ 70 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---GP--DEIVEQITKQLNKLI 70 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---EC--HHHHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe---cc--HHHHHHHHHHhcCCC
Confidence 5688888899999999999999999999999998765 4443345554 22 345667777776654
No 33
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=93.16 E-value=0.24 Score=39.12 Aligned_cols=65 Identities=14% Similarity=0.253 Sum_probs=49.0
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC--eEEEEEEEEeeeCCccccCHHHHHHHHHHHHh
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKG--ATLFSSVLEGTHGGDRIIRVEETRELLLKIIR 187 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~--~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~i~ 187 (189)
..|.|..+++||.|.+|...|...|+.|.+..+....+ ...-++.+. ++ .-..+.|...|.+++.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~---g~--e~~ieqL~kQL~KLid 96 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK---GD--DKTIEQIEKQAYKLVE 96 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE---EC--TTHHHHHHHHHTTSTT
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEE---CC--HHHHHHHHHHhcCcCc
Confidence 56788888999999999999999999999999987554 333344454 22 4557788888877553
No 34
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=92.07 E-value=0.45 Score=35.26 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=33.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGA 156 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~ 156 (189)
.|.|.|.+++|++.+|+.+|.+.++++..+++.+. |.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~ 38 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR 38 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE
Confidence 47899999999999999999999999999999776 44
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=89.36 E-value=1 Score=36.22 Aligned_cols=61 Identities=20% Similarity=0.108 Sum_probs=43.0
Q ss_pred eEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-----CeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 117 KLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLK-----GATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 117 ~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~-----~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
.+.|.|.+.+++|+|.+|+.+|-+.+..|.+.+.+... +.. .++++.. + . ..++|-+.|.+
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A--~I~IEV~--d--~-~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKA--LIYFEIE--G--G-DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEE--EEEEEEC--S--S-CHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEE--EEEEEEC--C--C-CHHHHHHHHhC
Confidence 46788899999999999999999999999999999864 343 3337732 2 3 67777766653
No 36
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=79.05 E-value=8.7 Score=31.76 Aligned_cols=63 Identities=8% Similarity=0.084 Sum_probs=45.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 119 RINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGA-TLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 119 ~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~-~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
.|-+..+++||.|.++|..|...|+++....+-+..+. +-|.|.+... | ......+.++|..+
T Consensus 202 sl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e-g---~~~d~~v~~aL~~L 265 (283)
T 2qmx_A 202 SIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI-G---HREDQNVHNALENL 265 (283)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE-S---CTTSHHHHHHHHHH
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe-c---CCCcHHHHHHHHHH
Confidence 33334468899999999999999999999999997553 4567888743 3 23345566666543
No 37
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=75.29 E-value=12 Score=31.37 Aligned_cols=65 Identities=8% Similarity=0.143 Sum_probs=45.9
Q ss_pred eEEEEEEeC-CCCChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 117 KLRINIIFG-KKRGNFTKLVEAMNALGFVFGDTSVTTLKGA-TLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 117 ~v~I~i~c~-~~~g~l~~il~aLe~l~L~V~~a~is~~~~~-~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
...|-+.-+ ++||.|.++|..|...|+++....+-+..+. .-|.|.+... | ......++++|..+
T Consensus 201 kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-g---~~~d~~v~~aL~~L 267 (313)
T 3mwb_A 201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD-G---HATDSRVADALAGL 267 (313)
T ss_dssp EEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE-S---CTTSHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe-C---CCCcHHHHHHHHHH
Confidence 344555565 7899999999999999999999999986543 3456777733 3 23445566666543
No 38
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=74.26 E-value=4.6 Score=25.09 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 33 RRRQKLNDRLLKLRSLMKKETVIEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 33 ~RR~kln~~f~~LRsl~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
+.|..+..+.++-+|=+-|- .|+.+|+.+|..|+.+...|
T Consensus 2 r~rR~~~NResA~rSR~RKk-------~~~~~LE~~v~~L~~eN~~L 41 (55)
T 1dh3_A 2 REVRLMKNREAARESRRKKK-------EYVKSLENRVAVLENQNKTL 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777763333 69999999999998887654
No 39
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=72.66 E-value=18 Score=25.90 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=31.3
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKG 155 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 155 (189)
..|.|.-+++||.+.+++.+|.+.|+.|.........+
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 35667778999999999999999999998887765444
No 40
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=72.50 E-value=3 Score=24.61 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhcc
Q 036599 60 TYIRQLKGRVLFLCDQVLQVEP 81 (189)
Q Consensus 60 ~YIk~Lq~kv~~Le~~~~~l~~ 81 (189)
.|+-+|+.++++|+....+++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEe 24 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEE 24 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888888777653
No 41
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=72.02 E-value=4.8 Score=23.12 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=24.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 51 KETVIEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 51 KaSIl~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
-+.-|+++=+.|..|+.+++.|+.++.++
T Consensus 6 e~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 6 ERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578999999999999999999988654
No 42
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=71.08 E-value=31 Score=29.05 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=43.1
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeE-EEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 126 KKRGNFTKLVEAMNALGFVFGDTSVTTLKGAT-LFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 126 ~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~-l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
++||.|.++|..|...|++.+...+-+..+.. -|.|.+.. .| ......++++|..+
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~-eg---~~~d~~v~~AL~~L 273 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL-DA---APWEERFRDALVEI 273 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE-SS---CTTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE-eC---CcCCHHHHHHHHHH
Confidence 57999999999999999999999999987655 45677773 22 34446677777654
No 43
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=70.29 E-value=3.1 Score=26.59 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhc
Q 036599 59 ITYIRQLKGRVLFLCDQVLQVE 80 (189)
Q Consensus 59 I~YIk~Lq~kv~~Le~~~~~l~ 80 (189)
-.||.+|+.+|+.|+..+..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999987654
No 44
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=68.03 E-value=16 Score=27.15 Aligned_cols=50 Identities=22% Similarity=0.158 Sum_probs=34.6
Q ss_pred CceEEEEEEe-CCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEE
Q 036599 115 GNKLRINIIF-GKKRGNFTKLVEAMNALGFVFGDTSVTTL-KGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c-~~~~g~l~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~vk 164 (189)
.+...|.|.. ++++|.+.+|+.+|.+.|+.|.....+.. +|..--+|++.
T Consensus 23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~ 74 (167)
T 2re1_A 23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVP 74 (167)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEEC
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEe
Confidence 4667888874 77899999999999999988877654432 34322255555
No 45
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=67.70 E-value=30 Score=24.61 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=37.0
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHH
Q 036599 120 INIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLK 184 (189)
Q Consensus 120 I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~ 184 (189)
|-+.-+++||.+.+++++|.+.|+.|....++..++.. .+.++ . . +.+...++|++
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~--~~~i~-~-~-----d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVA--NVVIR-P-S-----NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEE--EEEEE-E-S-----CHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcE--EEEEE-e-C-----CHHHHHHHHHH
Confidence 44455689999999999999999999765554334433 33344 2 1 35666666654
No 46
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.15 E-value=13 Score=23.41 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 31 ERRRRQKLNDRLLKLRSLMKKETVIEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 31 ER~RR~kln~~f~~LRsl~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
||++|.+...+..+-++=.- --+|+.+|+.++..|+.+...|
T Consensus 1 Ekr~rrrerNR~AA~rcR~r-------Kk~~~~~Le~~v~~L~~~n~~L 42 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNR-------RRELTDTLQAETDQLEDEKSAL 42 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777888888877622 2356666666666666555443
No 47
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=66.04 E-value=18 Score=29.51 Aligned_cols=62 Identities=6% Similarity=0.192 Sum_probs=44.9
Q ss_pred EEEEEe---CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 119 RINIIF---GKKRGNFTKLVEAMNALGFVFGDTSVTTLKGA-TLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 119 ~I~i~c---~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~-~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
.|-+.. +++||.|.++|..|...|+++....+-+..+. +-|.|.+...+ .....+.++|..+
T Consensus 188 sl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e~-----~~d~~v~~aL~~L 253 (267)
T 2qmw_A 188 SLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADS-----AITTDIKKVIAIL 253 (267)
T ss_dssp EEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESC-----CSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEec-----CCcHHHHHHHHHH
Confidence 444555 67899999999999999999999999997553 45567777432 2235566666543
No 48
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=64.91 E-value=9.7 Score=22.05 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
+.+--+||++|+++-.+|..-++.+
T Consensus 5 vkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 4566789999999999888776544
No 49
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=63.00 E-value=4.5 Score=25.52 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhc
Q 036599 60 TYIRQLKGRVLFLCDQVLQVE 80 (189)
Q Consensus 60 ~YIk~Lq~kv~~Le~~~~~l~ 80 (189)
.||..|+.+++.|+..+..+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888888887654
No 50
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=60.53 E-value=5 Score=26.10 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhc
Q 036599 59 ITYIRQLKGRVLFLCDQVLQVE 80 (189)
Q Consensus 59 I~YIk~Lq~kv~~Le~~~~~l~ 80 (189)
-.||..|+.+|+.||..+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999887653
No 51
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=60.40 E-value=47 Score=24.84 Aligned_cols=39 Identities=10% Similarity=0.188 Sum_probs=29.6
Q ss_pred CceEEEEEE-eCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 036599 115 GNKLRINII-FGKKRGNFTKLVEAMNALGFVFGDTSVTTL 153 (189)
Q Consensus 115 ~~~v~I~i~-c~~~~g~l~~il~aLe~l~L~V~~a~is~~ 153 (189)
.+...|+|. -++++|.+.+|+..|.+.|+.|.-...+++
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~ 52 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVS 52 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 566778884 477899999999999999966655544443
No 52
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=58.76 E-value=40 Score=24.81 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=34.8
Q ss_pred CceEEEEEEe-CCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEE
Q 036599 115 GNKLRINIIF-GKKRGNFTKLVEAMNALGFVFGDTSVTTL---KGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c-~~~~g~l~~il~aLe~l~L~V~~a~is~~---~~~~l~~~~vk 164 (189)
.+...|.|.. ++++|.+.+++.+|.+.|+.|.-...+.. .|..--+|++.
T Consensus 14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 5667777765 66799999999999999888766554432 23332356665
No 53
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=57.12 E-value=8.4 Score=25.22 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 036599 59 ITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 59 I~YIk~Lq~kv~~Le~~~~~ 78 (189)
-.||++|+.+|.+|+.....
T Consensus 28 ~~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36888888888888866543
No 54
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=55.27 E-value=81 Score=26.96 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=35.8
Q ss_pred CceEEEEEE-eCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEE
Q 036599 115 GNKLRINII-FGKKRGNFTKLVEAMNALGFVFGDTSVTTL---KGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~-c~~~~g~l~~il~aLe~l~L~V~~a~is~~---~~~~l~~~~vk 164 (189)
.+.+.|+|. .+..+|.+.+|+.+|.+.++.|.....++. .+..--+|++.
T Consensus 262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~ 315 (421)
T 3ab4_A 262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCP 315 (421)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEE
T ss_pred CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEe
Confidence 566788887 577899999999999999998877654333 23232256665
No 55
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=55.12 E-value=60 Score=23.86 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=34.5
Q ss_pred CceEEEEEEeCC---CCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 115 GNKLRINIIFGK---KRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c~~---~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
++-..|.|.... .||.+.+++++|.+.|+.|.... +....+ ++.+.
T Consensus 101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~i--s~vv~ 149 (167)
T 2re1_A 101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKV--SVLID 149 (167)
T ss_dssp SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEE--EEEEE
T ss_pred CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEE--EEEEe
Confidence 456778888765 79999999999999999998854 444443 45555
No 56
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=50.15 E-value=12 Score=24.68 Aligned_cols=36 Identities=11% Similarity=0.144 Sum_probs=27.6
Q ss_pred CccEEEEEecCceEEEEEEeCCCCChHHHHHHHHHh
Q 036599 105 EEDVKVTNMGGNKLRINIIFGKKRGNFTKLVEAMNA 140 (189)
Q Consensus 105 ~~~V~V~~~~~~~v~I~i~c~~~~g~l~~il~aLe~ 140 (189)
+.+-+|+...++++.+-|.|+++.-+|.+|=..+++
T Consensus 9 p~dW~VsRt~dGdYrL~itcpkKe~LLqSIEgmik~ 44 (76)
T 2rp4_A 9 AAEWNVSRTPDGDYRLAITCPNKEWLLQSIEGMIKE 44 (76)
T ss_dssp SCCCEEECCTTTBEEEEEEESCHHHHHHHHHHHHHH
T ss_pred CccceeeeccCCceEEEEEeCcHHHHHHHHHHHHHH
Confidence 345667666678999999999998888777666654
No 57
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=47.52 E-value=24 Score=30.93 Aligned_cols=63 Identities=3% Similarity=0.011 Sum_probs=44.2
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 118 LRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTLKG-ATLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 118 v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
..|-+..++++|.|.++|..|...|+++++..+-+..+ ..-+.|.|...+ .....++++|..+
T Consensus 35 TSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh-----~~d~~v~~AL~eL 98 (429)
T 1phz_A 35 ISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDK-----RTKPVLGSIIKSL 98 (429)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCG-----GGHHHHHHHHHHH
T ss_pred EEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEee-----CCCHHHHHHHHHH
Confidence 34444456789999999999999999999999998754 334567777431 2234456665543
No 58
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=47.22 E-value=12 Score=19.15 Aligned_cols=8 Identities=75% Similarity=1.078 Sum_probs=5.4
Q ss_pred HHHHHHHH
Q 036599 30 AERRRRQK 37 (189)
Q Consensus 30 ~ER~RR~k 37 (189)
+||+||..
T Consensus 12 aerrrrra 19 (26)
T 1g70_B 12 AERRRRRA 19 (26)
T ss_pred HHHHHHHH
Confidence 67777754
No 59
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=46.97 E-value=16 Score=19.75 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhh
Q 036599 61 YIRQLKGRVLFLCDQV 76 (189)
Q Consensus 61 YIk~Lq~kv~~Le~~~ 76 (189)
.+++||+++..|+.-.
T Consensus 14 ivq~lq~r~drle~tv 29 (32)
T 2akf_A 14 IVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666666543
No 60
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=46.48 E-value=88 Score=23.25 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=33.5
Q ss_pred CceEEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 115 GNKLRINIIFG---KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
++-..|.+... ..||.+.+++.+|.+.|+.|.-.. +..-.+ ++.+.
T Consensus 93 ~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~I--s~vV~ 141 (178)
T 2dtj_A 93 DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRI--SVLIR 141 (178)
T ss_dssp SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEE--EEEEE
T ss_pred CCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeE--EEEEe
Confidence 56678888874 457999999999999999998754 334333 45554
No 61
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=46.42 E-value=17 Score=24.15 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcc
Q 036599 59 ITYIRQLKGRVLFLCDQVLQVEP 81 (189)
Q Consensus 59 I~YIk~Lq~kv~~Le~~~~~l~~ 81 (189)
-.|+..|+.+++.||..+..+..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 35999999999999999987654
No 62
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=45.35 E-value=95 Score=23.30 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=34.4
Q ss_pred CceEEEEEEe-CCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEE
Q 036599 115 GNKLRINIIF-GKKRGNFTKLVEAMNALGFVFGDTSVTTL---KGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c-~~~~g~l~~il~aLe~l~L~V~~a~is~~---~~~~l~~~~vk 164 (189)
.+.+.|+|.. +..+|.+.+|+.+|.+.++.|.-..-+.. +|..--+|++.
T Consensus 14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 4566777654 56799999999999999988766543322 34433366666
No 63
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=44.01 E-value=26 Score=23.55 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
+..||+-|.-||..+++|+.+...+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999998887654
No 64
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=42.30 E-value=60 Score=25.17 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=34.7
Q ss_pred CceEEEEEE-eCCCCChHHHHHHHHHhCCCeEEEE--EEEeeC-CeEEEEEEEE
Q 036599 115 GNKLRINII-FGKKRGNFTKLVEAMNALGFVFGDT--SVTTLK-GATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~-c~~~~g~l~~il~aLe~l~L~V~~a--~is~~~-~~~l~~~~vk 164 (189)
.+.+.|.|. .++.||.+.+|+.+|.+.++.|--. +++..+ +....+|++.
T Consensus 33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~ 86 (200)
T 4go7_X 33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 86 (200)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEE
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecc
Confidence 567788886 4788999999999999998776555 334333 3444456665
No 65
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=42.23 E-value=98 Score=22.59 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=33.8
Q ss_pred CceEEEEEEeCC---CCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 115 GNKLRINIIFGK---KRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c~~---~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
++-..|.+.... .||++.+++++|.+.|+.|.-.. +..-.+ ++.+.
T Consensus 93 ~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~i--s~vv~ 141 (167)
T 2dt9_A 93 PDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEVRI--SVIIP 141 (167)
T ss_dssp CSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--ECSSEE--EEEEE
T ss_pred CCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--ccCCEE--EEEEe
Confidence 566788888755 79999999999999999995554 333332 45555
No 66
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=41.27 E-value=22 Score=27.88 Aligned_cols=47 Identities=17% Similarity=0.305 Sum_probs=32.9
Q ss_pred HHHHHH-HHHHHHHHHHHHhc-----ccccchHHHHHHHHHHHHHHHHHHHhh
Q 036599 29 EAERRR-RQKLNDRLLKLRSL-----MKKETVIEDAITYIRQLKGRVLFLCDQ 75 (189)
Q Consensus 29 ~~ER~R-R~kln~~f~~LRsl-----~DKaSIl~dAI~YIk~Lq~kv~~Le~~ 75 (189)
.-|=|| |..++.-...||-| ..-..++.|||+|.+.|-+=...|+.-
T Consensus 46 l~eLQ~v~~Dl~~F~~QL~qL~~~~i~~Tre~v~d~l~YLkkLD~l~~~Lq~h 98 (204)
T 2jqq_A 46 LINLEKTQSDLQKFMTQLDHLIKDDISNTQEIIKDVLEYLKKLDEIYGSLRNH 98 (204)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 78888888889888 234468999999999998777666544
No 67
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=40.99 E-value=76 Score=21.86 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=38.6
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHhc------------------------ccccc---hHHHHHHHHHHHHHHHHHHHhh
Q 036599 23 YKSKNLEAERRRRQKLNDRLLKLRSL------------------------MKKET---VIEDAITYIRQLKGRVLFLCDQ 75 (189)
Q Consensus 23 ~~~~h~~~ER~RR~kln~~f~~LRsl------------------------~DKaS---Il~dAI~YIk~Lq~kv~~Le~~ 75 (189)
..-+|.+.|| ||++|..++..|..= .|=.| -|.++..-|..|+..+..++.-
T Consensus 6 ~d~s~LPpeq-RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~ 84 (98)
T 2ke4_A 6 EDFSHLPPEQ-QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAW 84 (98)
T ss_dssp SCSSSSCHHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777776 456677777776654 23333 4677777888888888888877
Q ss_pred hhhhc
Q 036599 76 VLQVE 80 (189)
Q Consensus 76 ~~~l~ 80 (189)
+.+++
T Consensus 85 L~e~e 89 (98)
T 2ke4_A 85 LAEAE 89 (98)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76654
No 68
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=40.24 E-value=23 Score=22.15 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 036599 60 TYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 60 ~YIk~Lq~kv~~Le~~~~~l 79 (189)
+|+.+|+.++..|+.+...|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L 41 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSEL 41 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665544
No 69
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=40.15 E-value=23 Score=22.43 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=19.7
Q ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036599 40 DRLLKLRSLMKKETVIEDAITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 40 ~~f~~LRsl~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~~l 79 (189)
++.++-|+=.-| -.|+.+|+.++..|+.+...|
T Consensus 17 NreAArrsR~RK-------~~~~~~Le~~v~~L~~eN~~L 49 (63)
T 2dgc_A 17 NTEAARRSRARK-------LQRMKQLEDKVEELLSKNYHL 49 (63)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 555665555333 356677777777776665544
No 70
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.25 E-value=45 Score=22.76 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=28.0
Q ss_pred CceEEEEEEeC-----C-CCChHHHHHHHHHhCCCeEEEEEEEee
Q 036599 115 GNKLRINIIFG-----K-KRGNFTKLVEAMNALGFVFGDTSVTTL 153 (189)
Q Consensus 115 ~~~v~I~i~c~-----~-~~g~l~~il~aLe~l~L~V~~a~is~~ 153 (189)
+.+++|.++.. . .+.++..|++.|..+| +|+.+.+..-
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~d 50 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVED 50 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECSS
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEecC
Confidence 45677777431 1 2468899999999999 8998887663
No 71
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=38.73 E-value=1.2e+02 Score=22.67 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=33.6
Q ss_pred CceEEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 115 GNKLRINIIFG---KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
++-..|.+... ..||++.+++++|.+.++.|.-.. +..-.+ ++.+.
T Consensus 94 ~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei~I--s~vV~ 142 (181)
T 3s1t_A 94 DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRI--SVLCR 142 (181)
T ss_dssp SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEE--EEEEE
T ss_pred CCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cCCCEE--EEEEe
Confidence 45667777653 468999999999999999988777 334443 45555
No 72
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=38.53 E-value=90 Score=21.10 Aligned_cols=39 Identities=8% Similarity=0.073 Sum_probs=32.4
Q ss_pred ceEEEEEEeCCC--CChHHHHHHHHHhCCCeEEEEEEEeeC
Q 036599 116 NKLRINIIFGKK--RGNFTKLVEAMNALGFVFGDTSVTTLK 154 (189)
Q Consensus 116 ~~v~I~i~c~~~--~g~l~~il~aLe~l~L~V~~a~is~~~ 154 (189)
..+.|.|.|... ..+..-++++|+..++.+.+..+..++
T Consensus 7 ~~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~ 47 (94)
T 2lqj_A 7 QPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG 47 (94)
T ss_dssp EEEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS
T ss_pred eEEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC
Confidence 458899999875 578888999999999999999966643
No 73
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=38.42 E-value=62 Score=22.28 Aligned_cols=41 Identities=32% Similarity=0.351 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhhhh
Q 036599 35 RQKLNDRLLKLRSLMKKETVIEDAITYIRQLKGRVLFLCDQVL 77 (189)
Q Consensus 35 R~kln~~f~~LRsl~DKaSIl~dAI~YIk~Lq~kv~~Le~~~~ 77 (189)
|.+..+.|..|.+...+ ....|=+||..|.++|+-|+..+-
T Consensus 47 r~kFee~fe~l~s~l~~--f~e~a~e~vp~L~~~i~vle~~~~ 87 (94)
T 3fx7_A 47 RDKFSEVLDNLKSTFNE--FDEAAQEQIAWLKERIRVLEEDYL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHhhHHHhHHHHHHHHHhHHHHH
Confidence 34444444444443111 235788999999999999988763
No 74
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=38.21 E-value=33 Score=17.48 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 036599 53 TVIEDAITYIRQLKGRVLF 71 (189)
Q Consensus 53 SIl~dAI~YIk~Lq~kv~~ 71 (189)
|-|-+|-.|+.+|..+++.
T Consensus 4 sgliearkyleqlhrklkn 22 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4567888999999888753
No 75
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=36.87 E-value=26 Score=22.83 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhc
Q 036599 59 ITYIRQLKGRVLFLCDQVLQVE 80 (189)
Q Consensus 59 I~YIk~Lq~kv~~Le~~~~~l~ 80 (189)
-.|+..|+.+++.||..+..+.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3599999999999999887664
No 76
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=35.24 E-value=1e+02 Score=21.60 Aligned_cols=48 Identities=6% Similarity=0.029 Sum_probs=35.7
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhC---CCeEEEEEEEeeCCeEEEEEEEE
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNAL---GFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l---~L~V~~a~is~~~~~~l~~~~vk 164 (189)
..+.+++-....+++...|..+++.. +.++ ..+-|..+..+-.++.+.
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~ 85 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITIN 85 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEEC
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEE
Confidence 35677777777899999999999887 6777 557777777765555555
No 77
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=34.81 E-value=28 Score=19.65 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 036599 62 IRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 62 Ik~Lq~kv~~Le~~~~~l 79 (189)
+++|+.+|++|-.+...+
T Consensus 3 MnQLE~KVEeLl~~~~~L 20 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHL 20 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHH
Confidence 566667776666665443
No 78
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=34.56 E-value=1.1e+02 Score=23.17 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=37.0
Q ss_pred hhchHHHHHHHH-HHHHHHHHHHhcccccchH---HHHHHHHHHHHHHHHHHHhhhhh
Q 036599 25 SKNLEAERRRRQ-KLNDRLLKLRSLMKKETVI---EDAITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 25 ~~h~~~ER~RR~-kln~~f~~LRsl~DKaSIl---~dAI~YIk~Lq~kv~~Le~~~~~ 78 (189)
.....+||.++. .-.+++.-||..||+-+-. .-.=.||+-|.++...++....+
T Consensus 39 l~~~e~~r~k~~~h~~~k~~qlre~~d~gtt~~~i~~m~~yI~llrErea~lEqkVae 96 (169)
T 3k29_A 39 LRERESERDKVKNHYMQKIRQLREQLDDGTTSDAILKMKAYIKVVAIQLSEEEEKVNK 96 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777653 2345577788888876643 33446888899999999988754
No 79
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=33.97 E-value=33 Score=21.27 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 036599 60 TYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 60 ~YIk~Lq~kv~~Le~~~~~l 79 (189)
.|+.+|+.++..|+.+...|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L 41 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQL 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666665543
No 80
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=33.04 E-value=26 Score=23.68 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 036599 54 VIEDAITYIRQLKGRVLF 71 (189)
Q Consensus 54 Il~dAI~YIk~Lq~kv~~ 71 (189)
-+.+|++||+.++.+-+.
T Consensus 9 ~~~~A~~YvnkVK~rF~~ 26 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQG 26 (89)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHcc
Confidence 368999999999988543
No 81
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=31.63 E-value=29 Score=23.23 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 036599 53 TVIEDAITYIRQLKGRVLF 71 (189)
Q Consensus 53 SIl~dAI~YIk~Lq~kv~~ 71 (189)
.-+.+|++||+.++.+-+.
T Consensus 5 ~~~~~A~~yv~kVK~rF~~ 23 (85)
T 1e91_A 5 VEFNNAISYVNKIKTRFLD 23 (85)
T ss_dssp HHHHHHHHHHHHHHHHTSS
T ss_pred ccHHHHHHHHHHHHHHHhc
Confidence 3468999999999988644
No 82
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=31.01 E-value=23 Score=20.58 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHh
Q 036599 36 QKLNDRLLKLRS 47 (189)
Q Consensus 36 ~kln~~f~~LRs 47 (189)
+.|..+|.+|||
T Consensus 29 ~~MqsRLaALRS 40 (40)
T 2xze_Q 29 EAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC
Confidence 469999999986
No 83
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=30.96 E-value=37 Score=18.81 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 036599 62 IRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 62 Ik~Lq~kv~~Le~~~~~l 79 (189)
+++|+.+|++|-.++..+
T Consensus 2 MnQLEdKVEell~~~~~l 19 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHN 19 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHH
Confidence 456666666666655443
No 84
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=29.61 E-value=14 Score=22.72 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q 036599 59 ITYIRQLKGRVLFLC 73 (189)
Q Consensus 59 I~YIk~Lq~kv~~Le 73 (189)
-.||..|+++|+.||
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 468888888888775
No 85
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=28.88 E-value=1.1e+02 Score=22.67 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHHHHHhhhh
Q 036599 33 RRRQKLNDRLLKLRSLMKKET-VIEDAITYIRQLKGRVLFLCDQVL 77 (189)
Q Consensus 33 ~RR~kln~~f~~LRsl~DKaS-Il~dAI~YIk~Lq~kv~~Le~~~~ 77 (189)
.|=..+++++..|++|.-|-. -+.+.+.|-.+++.++..|+..-.
T Consensus 122 ~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~~l~~~~~ 167 (175)
T 4abx_A 122 EALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAGLEEDER 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCcHH
Confidence 345788999999999966665 589999999999999999976543
No 86
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=28.70 E-value=58 Score=28.44 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=41.1
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 116 NKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTSVTTL---KGATLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 116 ~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~is~~---~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
..++|++.+.++||+|.+|-.+|-+.++.+.+..=... ++.. .+.+- +| ..+...+.++|..+
T Consensus 358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~--~~v~~-th----~~~e~~~~~~~~~~ 423 (444)
T 3mtj_A 358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQV--DIILL-TH----VTLEKNVNAAIAKI 423 (444)
T ss_dssp EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CE--EEEEE-EC----SEEHHHHHHHHHHH
T ss_pred eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCc--eEEEE-ec----cCCHHHHHHHHHHH
Confidence 46899999999999999999999999998876543222 1111 23332 33 34566666666543
No 87
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=27.16 E-value=30 Score=19.55 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 036599 62 IRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 62 Ik~Lq~kv~~Le~~~~~l 79 (189)
+++|+.+|++|..++..+
T Consensus 3 MnQLE~kVEeLl~~~~~L 20 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHL 20 (36)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHH
Confidence 355666666665555443
No 88
>2p4r_T E3 ubiquitin-protein ligase itchy homolog; SH3 domain peptide ligand complex; 2.00A {Rattus norvegicus}
Probab=26.95 E-value=24 Score=18.56 Aligned_cols=9 Identities=22% Similarity=0.604 Sum_probs=5.7
Q ss_pred CCCCCCcCc
Q 036599 1 HEPPVNQTK 9 (189)
Q Consensus 1 ~~~~~~~~~ 9 (189)
+|||+++++
T Consensus 13 rPpP~tp~r 21 (26)
T 2p4r_T 13 RPPPPTPRR 21 (26)
T ss_pred CCCCCCCCC
Confidence 467777654
No 89
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=26.78 E-value=1.6e+02 Score=22.37 Aligned_cols=47 Identities=11% Similarity=0.270 Sum_probs=37.2
Q ss_pred ccEEEEEecCceEEEEEEeCCC------CChHHHHHHHHHhCCCeEEEEEEEee
Q 036599 106 EDVKVTNMGGNKLRINIIFGKK------RGNFTKLVEAMNALGFVFGDTSVTTL 153 (189)
Q Consensus 106 ~~V~V~~~~~~~v~I~i~c~~~------~g~l~~il~aLe~l~L~V~~a~is~~ 153 (189)
++|.+.. .++.+.+.+..... ...+-++-++|.+-||.+.+++|+.-
T Consensus 101 l~V~l~~-~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~ 153 (169)
T 2rrl_A 101 VHISLKL-DDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSE 153 (169)
T ss_dssp EEEEEEE-ETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESS
T ss_pred EEEEEEE-ECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecC
Confidence 5666665 47789999998875 25677888899999999999999863
No 90
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=25.99 E-value=43 Score=21.91 Aligned_cols=17 Identities=47% Similarity=0.593 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036599 55 IEDAITYIRQLKGRVLF 71 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~ 71 (189)
+.||++|++..+.+-+.
T Consensus 4 ~~dA~~yl~~VK~~F~~ 20 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGS 20 (77)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 57999999999988653
No 91
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=25.13 E-value=43 Score=23.44 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036599 55 IEDAITYIRQLKGRVLF 71 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~ 71 (189)
+.+|++||+.++.+-+.
T Consensus 7 ~~dA~~YvnkVK~rF~d 23 (105)
T 2f05_A 7 FNNAISYVNKIKTRFLD 23 (105)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 68999999999988644
No 92
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=25.12 E-value=3.1e+02 Score=23.17 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=32.8
Q ss_pred CceEEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 115 GNKLRINIIFG---KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
++-..|.|... ..||++.+++++|.+.|+.|.-.. +....+ ++.+.
T Consensus 342 ~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~i--s~vV~ 390 (421)
T 3ab4_A 342 DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRI--SVLIR 390 (421)
T ss_dssp CCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EETTEE--EEEEE
T ss_pred CCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeE--EEEEe
Confidence 45566777764 468999999999999999998543 334443 45555
No 93
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=24.87 E-value=1.7e+02 Score=21.60 Aligned_cols=26 Identities=4% Similarity=0.151 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhc
Q 036599 55 IEDAITYIRQLKGRVLFLCDQVLQVE 80 (189)
Q Consensus 55 l~dAI~YIk~Lq~kv~~Le~~~~~l~ 80 (189)
+++...-.+++|++.++++++..+.+
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~e 68 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEKT 68 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 45667778888999999988887543
No 94
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=24.55 E-value=56 Score=18.06 Aligned_cols=18 Identities=0% Similarity=0.276 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 036599 62 IRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 62 Ik~Lq~kv~~Le~~~~~l 79 (189)
+++|+.+|++|-.+...+
T Consensus 2 MnQLEdKvEeLl~~~~~L 19 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHX 19 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHH
Confidence 456677777666665544
No 95
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=24.48 E-value=33 Score=19.39 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 036599 58 AITYIRQLKGRVLFLCDQVLQV 79 (189)
Q Consensus 58 AI~YIk~Lq~kv~~Le~~~~~l 79 (189)
.+..|..|+.+++.|+.+.+.+
T Consensus 2 g~~~i~avKkKiq~lq~q~d~a 23 (37)
T 3azd_A 2 GSSSLEAVRRKIRSLQEQNYHL 23 (37)
T ss_dssp ----CHHHHHHHHHHHHHTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888888887654
No 96
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=24.34 E-value=1.8e+02 Score=20.04 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=35.6
Q ss_pred ccEEEEEecCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEE
Q 036599 106 EDVKVTNMGGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTS 149 (189)
Q Consensus 106 ~~V~V~~~~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~ 149 (189)
.++.|..++.+...++|.-+...--+-.|.++++++|--|.+..
T Consensus 36 VnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg~IHSID 79 (96)
T 2x3d_A 36 VNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAIHSID 79 (96)
T ss_dssp EEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeee
Confidence 46666666666777777777777789999999999999998887
No 97
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=23.35 E-value=2e+02 Score=24.91 Aligned_cols=48 Identities=19% Similarity=0.068 Sum_probs=34.5
Q ss_pred CceEEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 036599 115 GNKLRINIIFG---KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLE 164 (189)
Q Consensus 115 ~~~v~I~i~c~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk 164 (189)
.+.+.|.|... ..+|.+.+++.+|.+.++.|....-.+....+ +|++.
T Consensus 316 ~~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse~~I--s~~V~ 366 (473)
T 3c1m_A 316 KNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNI--SLVVS 366 (473)
T ss_dssp EEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCE--EEEEE
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCCCEE--EEEEe
Confidence 35677888863 45799999999999999999877643333222 56666
No 98
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=22.63 E-value=1.9e+02 Score=19.88 Aligned_cols=45 Identities=9% Similarity=0.214 Sum_probs=36.5
Q ss_pred CccEEEEEecCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEE
Q 036599 105 EEDVKVTNMGGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTS 149 (189)
Q Consensus 105 ~~~V~V~~~~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~ 149 (189)
..++.|.-++.+...++|.-+...--|-.|.++++++|--|.+..
T Consensus 36 gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg~IHSID 80 (97)
T 2raq_A 36 GVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSVD 80 (97)
T ss_dssp EEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeee
Confidence 356677666666777888777777889999999999999998887
No 99
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=21.83 E-value=2e+02 Score=19.86 Aligned_cols=44 Identities=9% Similarity=0.213 Sum_probs=35.1
Q ss_pred ccEEEEEecCceEEEEEEeCCCCChHHHHHHHHHhCCCeEEEEE
Q 036599 106 EDVKVTNMGGNKLRINIIFGKKRGNFTKLVEAMNALGFVFGDTS 149 (189)
Q Consensus 106 ~~V~V~~~~~~~v~I~i~c~~~~g~l~~il~aLe~l~L~V~~a~ 149 (189)
.++.|..++.+...++|.-+...--+-.|.++++++|--|.+..
T Consensus 37 VnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~GgvIHSID 80 (100)
T 3bpd_A 37 VNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVIHSVD 80 (100)
T ss_dssp EEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeee
Confidence 46666666666677777777666779999999999999998887
No 100
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=21.20 E-value=95 Score=22.18 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=22.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhh
Q 036599 52 ETVIEDAITYIRQLKGRVLFLCDQVLQ 78 (189)
Q Consensus 52 aSIl~dAI~YIk~Lq~kv~~Le~~~~~ 78 (189)
-+|..++=.||-+|+.+|..|+.+...
T Consensus 32 e~l~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 32 ENMKTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999988754
No 101
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=20.66 E-value=2e+02 Score=23.64 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=30.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHhc---------------ccccchHHHHHHHHHHHHHHH-HHHHhhh
Q 036599 26 KNLEAERRRRQKLNDRLLKLRSL---------------MKKETVIEDAITYIRQLKGRV-LFLCDQV 76 (189)
Q Consensus 26 ~h~~~ER~RR~kln~~f~~LRsl---------------~DKaSIl~dAI~YIk~Lq~kv-~~Le~~~ 76 (189)
..+..+-.+|++|-..-..+-.. .+...++.+|-..++++.+++ ..|....
T Consensus 39 ~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~~~la~~l 105 (298)
T 3axj_B 39 NELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALEL 105 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666777788776544444333 123447778888888876654 5555444
No 102
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.33 E-value=1.2e+02 Score=18.50 Aligned_cols=27 Identities=7% Similarity=0.001 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 036599 54 VIEDAITYIRQLKGRVLFLCDQVLQVE 80 (189)
Q Consensus 54 Il~dAI~YIk~Lq~kv~~Le~~~~~l~ 80 (189)
.|.+.++-+..|.....+|+.+...++
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888888888888776543
No 103
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=20.03 E-value=2.5e+02 Score=20.10 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=35.7
Q ss_pred CceEEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeeeCCccccCHHHHHHHHHHH
Q 036599 115 GNKLRINIIFG---KKRGNFTKLVEAMNALGFVFGDTSVTTLKGATLFSSVLEGTHGGDRIIRVEETRELLLKI 185 (189)
Q Consensus 115 ~~~v~I~i~c~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~vk~~~~~~~~~s~~~lk~~L~~~ 185 (189)
.+-..|.+... ..+|++.+++.+|. ++.|.-..-.+.+-.+ +|.+. . -+.+...++|++.
T Consensus 86 ~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~i--s~vv~-~------~d~~~a~~~Lh~~ 148 (157)
T 3mah_A 86 KDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNV--SVLVK-A------EDKKKALIALSNK 148 (157)
T ss_dssp EEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCE--EEEEE-G------GGHHHHHHHHHHH
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEE--EEEEc-H------HHHHHHHHHHHHH
Confidence 35577887764 35899999999999 7776665533333333 55565 1 1245555555544
Done!