BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036600
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 1 QIGGLQVFYENQWIDVNPISGGLVVNIGDFLQVISNDKLKSVDHRVAANVHATSRVSVAC 60
++ GLQ+ + QWIDV P +VVN+GD L+VI+N K KSV HRV A +R S+A
Sbjct: 191 KVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDG-ARXSLAS 249
Query: 61 FFTGHPTETQKPFGPIKELISEENPPVYREFLVGEYFSKFFSKELEGK 108
F+ P + E +EEN VY +F+ +Y + + + K
Sbjct: 250 FYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAK 297
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 2 IGGLQVFYENQWIDVNPISGGLVVNIGDFLQVISNDKLKSVDHRVAANVHATSRVSVACF 61
+ GLQ+FYE +W+ + +V++IGD L+++SN K KS+ HR N R+S A F
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKV-RISWAVF 304
Query: 62 FTGHPTETQKPFGPIKELISEENPPVYREFLVGEYFS-KFFSKELE 106
P + + P+ E++S E+P + ++ K F KE E
Sbjct: 305 C--EPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQE 348
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 2 IGGLQVFYENQWIDVNPISGGLVVNIGDFLQVISNDKLKSVDHRVAANVHATSRVSVACF 61
+ GLQ+FYE +W+ + +V++IGD L+++SN K KS+ HR N R+S A F
Sbjct: 245 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKV-RISWAVF 303
Query: 62 FTGHPTETQKPFGPIKELISEENPPVYREFLVGEYFS-KFFSKELE 106
P + + P+ E++S E+P + ++ K F KE E
Sbjct: 304 C--EPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQE 347
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 2 IGGLQVFYENQWIDVNPISGGLVVNIGDFLQVISNDKLKSVDHRVAANVHATSRVSVACF 61
+ GLQ+FYE +W+ + +V +IGD L+++SN K KS+ HR N R+S A F
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKV-RISWAVF 304
Query: 62 FTGHPTETQKPFGPIKELISEENPPVYREFLVGEYFS-KFFSKELE 106
P + + P+ E +S E+P + ++ K F KE E
Sbjct: 305 C--EPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHKLFGKEQE 348
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 3 GGLQVF-YENQWIDVNPISGGLVVNIGDFLQVISNDKLKSVDHRVA---ANVHATSRVSV 58
GGL+V + QW+ +NP G LV+NIGD L+ ++N+ L S HRV R S
Sbjct: 206 GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRGVPRYST 265
Query: 59 ACFFTGHPTETQKPFGPIKELISEENPPVYREFLVGEYFSKFFSKELE 106
FF ++ + ++ ++ ENP Y E + + F + +E++
Sbjct: 266 P-FFLHFASDYE--IKTLQNCVTAENPDRYPESITADEFLQQRLREIK 310
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 4 GLQVFYEN-QWIDVNPISGGLVVNIGDFLQVISNDKLKSVDHRV---AANVHATSRVSVA 59
GLQV ++ W+DV G +++NIGD LQ S+ S HRV SR+S+
Sbjct: 190 GLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLP 249
Query: 60 CFFTGHPT 67
F HP+
Sbjct: 250 LFLHPHPS 257
>pdb|3PUF|B Chain B, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|E Chain E, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|H Chain H, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|K Chain K, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|N Chain N, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|Q Chain Q, Crystal Structure Of Human Rnase H2 Complex
Length = 224
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 14/70 (20%)
Query: 40 KSVDHRVAA----NVHATSRVSVACFFTGHPTETQKPFGPIKELISEENPPVYREFLVGE 95
K V+ VAA NV+ +SRV FF+G T K EE+ Y L+ +
Sbjct: 160 KKVNQTVAALKTNNVNVSSRVQSTAFFSGDQASTDK----------EEDYIRYAHGLISD 209
Query: 96 YFSKFFSKEL 105
Y K S +L
Sbjct: 210 YIPKELSDDL 219
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|B Chain B, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|C Chain C, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|D Chain D, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
Length = 292
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 10 ENQWIDVNPISGGLVVNIGDFLQVISNDKLKSVDHRVAANVH 51
E QW+DV SG +V + + QV+S + + +R A N+H
Sbjct: 160 EAQWLDVFETSGAELVILARYXQVLSPEASARLANR-AINIH 200
>pdb|3P56|B Chain B, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
pdb|3P56|E Chain E, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
Length = 237
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 14/67 (20%)
Query: 40 KSVDHRVAA----NVHATSRVSVACFFTGHPTETQKPFGPIKELISEENPPVYREFLVGE 95
K V+ VAA NV+ +SRV FF+G T K EE+ Y L+ +
Sbjct: 180 KKVNQTVAALKTNNVNVSSRVQSTAFFSGDQASTDK----------EEDYIRYAHGLISD 229
Query: 96 YFSKFFS 102
Y K S
Sbjct: 230 YIPKELS 236
>pdb|2BVM|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 542
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 22/121 (18%)
Query: 1 QIGGLQVFYENQWIDVNPI--------SGGLVVNI--GDFLQVISNDKLKSV-----DHR 45
QI + Y NQW DVN S ++N ++ ND L+S D R
Sbjct: 106 QINDTAINYINQWKDVNSDYNVNVFYDSNAFLINTLKKTVVESAINDTLESFRENLNDPR 165
Query: 46 VAANVHATSRVSVACFFTGHPTETQKPFGPIKELISEENPPVYREFLVGEYFSKFFSKEL 105
N R+ + + QK F + EENP + + +V Y S +SKE+
Sbjct: 166 FDYNKFFRKRMEII-------YDKQKNFINYYKAQREENPELIIDDIVKTYLSNEYSKEI 218
Query: 106 E 106
+
Sbjct: 219 D 219
>pdb|2BVL|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 543
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 22/121 (18%)
Query: 1 QIGGLQVFYENQWIDVNPI--------SGGLVVNI--GDFLQVISNDKLKSV-----DHR 45
QI + Y NQW DVN S ++N ++ ND L+S D R
Sbjct: 106 QINDTAINYINQWKDVNSDYNVNVFYDSNAFLINTLKKTVVESAINDTLESFRENLNDPR 165
Query: 46 VAANVHATSRVSVACFFTGHPTETQKPFGPIKELISEENPPVYREFLVGEYFSKFFSKEL 105
N R+ + + QK F + EENP + + +V Y S +SKE+
Sbjct: 166 FDYNKFFRKRMEII-------YDKQKNFINYYKAQREENPELIIDDIVKTYLSNEYSKEI 218
Query: 106 E 106
+
Sbjct: 219 D 219
>pdb|3GM5|A Chain A, Crystal Structure Of A Putative Methylmalonyl-Coenzyme A
Epimerase From Thermoanaerobacter Tengcongensis At 2.0
A Resolution
Length = 159
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 62 FTGHPTETQKPF-----GPIK-ELIS-EENPPVYREFL 92
F G PT+ + GP++ ELI +ENP +REFL
Sbjct: 61 FNGRPTKARAKLAFFELGPLQLELIEPDENPSTWREFL 98
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169
Of Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 49 NVHATSRVSVACFFTGHPTETQKPFGPIKELISE 82
NV S ++ C TGHP K + KE+I++
Sbjct: 15 NVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD 48
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 49 NVHATSRVSVACFFTGHPTETQKPFGPIKELISE 82
NV S ++ C TGHP K + KE+I++
Sbjct: 13 NVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD 46
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 49 NVHATSRVSVACFFTGHPTETQKPFGPIKELISE 82
NV S ++ C TGHP K + KE+I++
Sbjct: 15 NVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,621,416
Number of Sequences: 62578
Number of extensions: 131645
Number of successful extensions: 313
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 16
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)