Query 036603
Match_columns 926
No_of_seqs 506 out of 2361
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02414 pepN_proteo aminopep 100.0 2E-187 5E-192 1691.2 100.0 850 62-924 1-863 (863)
2 PRK14015 pepN aminopeptidase N 100.0 7E-186 1E-190 1683.6 102.1 858 53-926 4-875 (875)
3 COG0308 PepN Aminopeptidase N 100.0 7E-117 2E-121 1087.6 69.3 822 52-919 6-859 (859)
4 KOG1046 Puromycin-sensitive am 100.0 9.5E-96 2E-100 899.8 54.4 798 61-900 27-875 (882)
5 PF11940 DUF3458: Domain of un 100.0 1.9E-94 4E-99 799.5 33.4 365 500-882 2-367 (367)
6 TIGR02412 pepN_strep_liv amino 100.0 6.3E-87 1.4E-91 822.8 71.6 696 66-846 12-745 (831)
7 TIGR02411 leuko_A4_hydro leuko 100.0 2.5E-65 5.5E-70 607.7 39.1 394 67-494 10-452 (601)
8 PF01433 Peptidase_M1: Peptida 100.0 3.1E-59 6.7E-64 536.0 35.1 344 67-419 5-369 (390)
9 KOG1047 Bifunctional leukotrie 100.0 3.7E-51 8.1E-56 451.2 28.1 407 60-492 10-459 (613)
10 KOG1932 TATA binding protein a 100.0 1.6E-32 3.5E-37 322.9 35.2 517 69-626 28-667 (1180)
11 COG3975 Predicted protease wit 99.3 1.4E-10 3E-15 130.3 19.7 242 258-512 165-448 (558)
12 PF11838 ERAP1_C: ERAP1-like C 99.2 1.2E-10 2.6E-15 130.3 17.0 303 564-921 1-321 (324)
13 PF13485 Peptidase_MA_2: Pepti 99.0 1.9E-10 4.1E-15 110.0 5.2 101 343-449 23-128 (128)
14 PF05299 Peptidase_M61: M61 gl 97.3 7.2E-05 1.6E-09 70.8 0.3 45 345-389 4-59 (122)
15 PF10460 Peptidase_M30: Peptid 97.0 0.027 5.9E-07 63.2 17.5 135 343-485 137-285 (366)
16 PF04450 BSP: Peptidase of pla 94.7 0.66 1.4E-05 48.4 13.9 168 279-479 25-202 (205)
17 PF07607 DUF1570: Protein of u 92.8 0.071 1.5E-06 51.2 2.5 36 347-382 3-40 (128)
18 PF11838 ERAP1_C: ERAP1-like C 92.6 1.3 2.8E-05 49.4 12.8 100 688-793 124-229 (324)
19 PF10026 DUF2268: Predicted Zn 91.5 0.74 1.6E-05 47.8 8.4 97 283-386 4-110 (195)
20 PF01863 DUF45: Protein of unk 87.9 1.2 2.6E-05 46.4 6.6 69 281-360 111-179 (205)
21 PRK13800 putative oxidoreducta 87.8 44 0.00096 43.1 21.9 264 602-925 622-895 (897)
22 KOG1046 Puromycin-sensitive am 86.6 23 0.00049 45.5 18.1 181 703-895 644-837 (882)
23 PRK04860 hypothetical protein; 82.8 1.7 3.6E-05 43.6 4.5 70 280-358 5-76 (160)
24 smart00731 SprT SprT homologue 80.3 2.1 4.5E-05 42.3 4.2 66 285-359 4-73 (146)
25 COG4324 Predicted aminopeptida 77.7 3.5 7.6E-05 43.7 4.9 35 343-383 195-229 (376)
26 TIGR00207 fliG flagellar motor 75.0 15 0.00033 41.5 9.6 131 772-924 45-184 (338)
27 TIGR02270 conserved hypothetic 70.1 1E+02 0.0022 35.9 15.1 79 747-829 174-253 (410)
28 PF10023 DUF2265: Predicted am 66.8 6.8 0.00015 43.8 4.3 35 344-384 164-198 (337)
29 PRK09687 putative lyase; Provi 66.7 1.5E+02 0.0033 32.5 15.0 87 736-829 175-266 (280)
30 cd04269 ZnMc_adamalysin_II_lik 62.9 23 0.0005 36.4 7.3 14 344-357 130-143 (194)
31 PF08325 WLM: WLM domain; Int 62.6 33 0.00072 35.3 8.2 28 333-360 70-97 (186)
32 PRK05686 fliG flagellar motor 61.9 36 0.00077 38.6 9.1 128 775-924 51-186 (339)
33 COG1451 Predicted metal-depend 61.2 11 0.00024 39.9 4.6 71 279-360 120-190 (223)
34 PF14841 FliG_M: FliG middle d 59.6 15 0.00033 32.1 4.5 47 870-925 21-67 (79)
35 PRK03982 heat shock protein Ht 57.5 16 0.00035 40.3 5.3 68 284-360 70-140 (288)
36 PRK05457 heat shock protein Ht 57.2 13 0.00029 40.9 4.5 69 284-361 79-150 (284)
37 PRK01345 heat shock protein Ht 56.9 14 0.00031 41.4 4.7 69 284-361 69-140 (317)
38 PF01447 Peptidase_M4: Thermol 55.8 35 0.00076 33.9 6.8 75 275-357 67-147 (150)
39 PRK04351 hypothetical protein; 54.3 7.8 0.00017 38.4 1.9 58 290-357 13-73 (149)
40 PRK02870 heat shock protein Ht 53.7 21 0.00045 40.4 5.4 64 285-356 118-184 (336)
41 PF01435 Peptidase_M48: Peptid 52.7 6.7 0.00014 41.1 1.2 72 286-364 35-108 (226)
42 PF12315 DUF3633: Protein of u 51.8 24 0.00051 36.7 4.9 41 346-388 94-134 (212)
43 cd07357 HN_L-whirlin_R2_like S 51.7 64 0.0014 28.2 6.7 39 431-470 10-48 (81)
44 PRK07194 fliG flagellar motor 51.3 75 0.0016 35.9 9.4 131 772-924 43-181 (334)
45 PRK03001 M48 family peptidase; 51.1 17 0.00038 40.0 4.2 69 283-360 68-139 (283)
46 PF03272 Enhancin: Viral enhan 50.5 4.8E+02 0.01 33.2 16.9 126 346-481 237-377 (775)
47 cd04272 ZnMc_salivary_gland_MP 49.9 40 0.00087 35.5 6.6 12 346-357 146-157 (220)
48 COG0501 HtpX Zn-dependent prot 49.5 23 0.00051 38.9 5.0 65 291-363 108-175 (302)
49 PRK04897 heat shock protein Ht 49.2 23 0.00049 39.4 4.8 68 284-360 82-152 (298)
50 PF06114 DUF955: Domain of unk 48.5 11 0.00024 34.8 1.9 18 346-363 43-60 (122)
51 PRK02391 heat shock protein Ht 46.4 30 0.00064 38.4 5.1 69 284-361 78-149 (296)
52 PF13646 HEAT_2: HEAT repeats; 46.2 99 0.0022 26.6 7.6 42 736-777 47-88 (88)
53 PF01421 Reprolysin: Reprolysi 46.0 28 0.00061 36.0 4.6 90 264-356 50-142 (199)
54 PRK13800 putative oxidoreducta 44.8 8.2E+02 0.018 31.7 21.2 108 762-887 724-833 (897)
55 PRK03072 heat shock protein Ht 44.2 30 0.00064 38.3 4.7 70 283-361 71-143 (288)
56 PF08766 DEK_C: DEK C terminal 42.5 37 0.00081 27.3 3.8 45 439-483 2-46 (54)
57 COG3227 LasB Zinc metalloprote 42.4 41 0.00088 39.2 5.4 102 274-381 268-374 (507)
58 COG4783 Putative Zn-dependent 39.7 23 0.00051 41.2 3.0 56 300-361 90-146 (484)
59 COG3091 SprT Zn-dependent meta 39.3 34 0.00074 33.7 3.6 82 282-372 5-91 (156)
60 PRK01265 heat shock protein Ht 36.5 48 0.001 37.3 4.8 66 284-359 85-154 (324)
61 PF12388 Peptidase_M57: Dual-a 36.2 1.4E+02 0.0031 31.3 7.9 13 344-356 132-144 (211)
62 KOG2719 Metalloprotease [Gener 35.9 44 0.00096 38.6 4.4 64 286-356 221-291 (428)
63 KOG3607 Meltrins, fertilins an 34.8 94 0.002 38.8 7.3 90 263-357 241-335 (716)
64 TIGR02412 pepN_strep_liv amino 34.3 2.3E+02 0.005 36.3 11.0 56 735-791 670-726 (831)
65 smart00638 LPD_N Lipoprotein N 34.1 6E+02 0.013 30.8 14.3 82 747-829 473-561 (574)
66 PF13574 Reprolysin_2: Metallo 33.0 27 0.00058 35.5 2.0 12 346-357 112-123 (173)
67 PF06667 PspB: Phage shock pro 32.3 67 0.0014 28.0 3.9 34 750-783 38-71 (75)
68 PF09972 DUF2207: Predicted me 32.1 8.9E+02 0.019 28.4 15.7 86 67-154 1-107 (511)
69 PF10335 DUF294_C: Putative nu 31.9 1.1E+02 0.0025 29.9 6.2 88 802-908 49-136 (145)
70 PF01347 Vitellogenin_N: Lipop 31.2 4.7E+02 0.01 32.0 12.8 88 740-828 510-604 (618)
71 PF08014 DUF1704: Domain of un 30.6 1.8E+02 0.0039 33.1 8.2 81 289-384 120-213 (349)
72 PF13699 DUF4157: Domain of un 30.5 1E+02 0.0022 27.1 4.9 61 288-357 7-73 (79)
73 PF08479 POTRA_2: POTRA domain 30.3 1.8E+02 0.0039 24.9 6.4 55 445-507 18-73 (76)
74 PF12725 DUF3810: Protein of u 29.8 32 0.0007 38.6 2.1 31 345-387 196-226 (318)
75 cd04279 ZnMc_MMP_like_1 Zinc-d 29.7 1.8E+02 0.0038 28.7 7.2 34 264-297 3-39 (156)
76 PF10263 SprT-like: SprT-like 29.6 43 0.00092 33.1 2.7 19 342-360 57-75 (157)
77 PF12174 RST: RCD1-SRO-TAF4 (R 27.3 1E+02 0.0022 26.5 4.1 48 426-474 11-58 (70)
78 PLN03077 Protein ECB2; Provisi 26.4 3.2E+02 0.007 35.0 10.6 145 739-893 559-709 (857)
79 COG3590 PepO Predicted metallo 25.2 22 0.00047 42.2 -0.3 59 322-380 461-525 (654)
80 PF13688 Reprolysin_5: Metallo 24.9 39 0.00084 34.7 1.5 14 344-357 141-154 (196)
81 PF12180 EABR: TSG101 and ALIX 24.8 61 0.0013 23.8 2.0 22 886-907 12-33 (35)
82 PF01431 Peptidase_M13: Peptid 24.6 1E+02 0.0022 31.9 4.7 47 334-380 25-74 (206)
83 PF07550 DUF1533: Protein of u 24.3 1.2E+02 0.0027 25.3 4.2 41 111-151 7-56 (65)
84 cd07680 F-BAR_PACSIN1 The F-BA 23.4 1.5E+02 0.0033 32.2 5.7 63 862-924 190-253 (258)
85 PF09836 DUF2063: Uncharacteri 23.1 58 0.0012 29.3 2.1 33 433-465 55-87 (94)
86 PF08278 DnaG_DnaB_bind: DNA p 22.1 1.2E+02 0.0026 28.8 4.2 55 820-889 5-59 (127)
87 PRK09687 putative lyase; Provi 22.0 1.1E+03 0.023 25.9 21.9 27 600-627 22-48 (280)
88 cd04267 ZnMc_ADAM_like Zinc-de 21.2 1.6E+02 0.0035 30.0 5.3 13 345-357 133-145 (192)
89 PF13646 HEAT_2: HEAT repeats; 20.9 4.1E+02 0.009 22.6 7.2 57 736-793 16-72 (88)
90 PF03442 CBM_X2: Carbohydrate 20.4 73 0.0016 28.3 2.1 49 103-151 21-75 (84)
91 KOG2661 Peptidase family M48 [ 20.2 67 0.0014 35.7 2.1 19 343-361 273-291 (424)
No 1
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=2.5e-187 Score=1691.25 Aligned_cols=850 Identities=56% Similarity=0.954 Sum_probs=804.7
Q ss_pred CCCCCCcceEEEEEEEEECCCeEEEEEEEEEEEeccCCCCcEEEEcCCcEEEEEEEcCeEecccceEecCCEEEEECCCC
Q 036603 62 DYKMPNYYFDTVDLKFSLGEEKTIVSSKITVFPRVEGSSSPLVLDGQDLKLVSIKVNGIELKEGDYHLDSRHLTLQSPPN 141 (926)
Q Consensus 62 ~y~~p~~~~~~~~L~~~l~~~~~~v~g~i~i~~~~~~~~~~l~L~~~~L~I~~v~i~G~~l~~~~y~~~~~~L~I~l~~~ 141 (926)
||++|+|.+.||+|+|+++++.++++|+++|+++...+.+.|+||+.+|+|.+|++||+.+....|+.+++.|+|...+
T Consensus 1 dy~~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~~~~~~~~~~~~~~L~I~~~~- 79 (863)
T TIGR02414 1 DYKPPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGKPLAAGDYQLDDETLTIASVP- 79 (863)
T ss_pred CCCCCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCEecCcceEEEcCCEEEEeeCC-
Confidence 7999999999999999999999999999999988654567899999999999999999887545688899999999755
Q ss_pred CeEEEEEEEEEeeccCCCCCceEeeCCeEEeccccCCcceeeccCCCCCCceeEEEEEEEcCCCceEEecCCccccceec
Q 036603 142 GAFTLEIVTEIYPQKNTSLEGIYKSSGNFCTQCEAEGFRKITFYQDRPDIMAKYKCYIEADKSLYPVLLSNGNLIERGNL 221 (926)
Q Consensus 142 ~~~~L~I~~~~~p~~~~~~~Gly~s~~~~~Tq~ep~~aR~~fPc~DeP~~katf~l~I~~p~~~~~v~lSNG~l~~~~~~ 221 (926)
+.++|+|.|.++|..++.+.|+|+++++++|||||+|||++|||+|+|++||+|+++|++|++.|++++|||++++..+.
T Consensus 80 ~~~~l~i~~~~~p~~n~~l~GlY~s~~~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~~~~~~ 159 (863)
T TIGR02414 80 ESFTLEIETEIHPEENTSLEGLYKSGGNFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKIASGEL 159 (863)
T ss_pred ccEEEEEEEEeecccCCCCeEEEEeCCeEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcceEEEeCCccccceec
Confidence 57999999999999999999999999999999999999999999999999999999999998756688999999888777
Q ss_pred cCCeEEEEEeCCcccccceeeeEeccceeEEeeeeecCCceEEEEEEccCCChhhHHHHHHHHHHHHHHHHHHhCCCCCC
Q 036603 222 EGGRHYALWEDPFKKPCYLFALVAGQLESRDDIFVTRSGRKVSLRIWTPAQDLPKTAHAMYSLKAAMKWDEDVFGLEYDL 301 (926)
Q Consensus 222 ~~g~~~~~f~~~~p~ptyl~a~~vG~f~~~~~~~~t~~g~~v~l~vy~~~~~~~~~~~al~~~~~~l~~~e~~fG~~YP~ 301 (926)
.+|+++++|+.++|||+|+|||++|+|+++++.+++.+|++|++++|++|+..++++++++.++++|+|||++||+|||+
T Consensus 160 ~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl 239 (863)
T TIGR02414 160 PDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDL 239 (863)
T ss_pred CCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCCh
Confidence 78999999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred CcccEEEecCCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCCcccccCCCchhHHHHHHHHHH
Q 036603 302 DLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRD 381 (926)
Q Consensus 302 ~k~~iV~vp~f~~gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn~Vt~~~w~dlWL~EGfAty~~ 381 (926)
+||++|++|+|++||||||||++|++.+++.++...++.+++.+..+|+||++||||||+|||+||+++|||||||+|++
T Consensus 240 ~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~LWLnEGfAty~e 319 (863)
T TIGR02414 240 DIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRD 319 (863)
T ss_pred hhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhhccCCCCCCCCCCCCCc------------cccchHHHHHHHHHHhhCHHHHHHHHHHH
Q 036603 382 QEFSSDMGSRTVKRIADVSKLRNYQFPQDAGPMAHPVRP------------HSYIKGAEVVRMYKTLLGSQGFRKGMDLY 449 (926)
Q Consensus 382 ~~~~~~~~~~~~~r~~~~~~l~~~~~~~D~~~~~~pi~~------------~~Y~KGa~vl~ML~~~lG~e~F~~~lr~Y 449 (926)
++|..++.+....++.++..++..++.+|+++++||+++ ++|.||++|||||+.+||++.|++||+.|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~lr~~~f~~D~~p~~~Pi~~~~~~~i~~~y~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Y 399 (863)
T TIGR02414 320 QEFSADMTSRAVKRIEDVRLLRAHQFPEDAGPMAHPVRPESYVEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLY 399 (863)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhcccccccCCCCCCcchhhHHhccchHHhHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999998887777778777777777889999999999853 57999999999999999999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcCcChHHHHHHHhcCCcceEEEEEEeecCCcEEEEEEEEecCCCCCCCCCcceEEEEEE
Q 036603 450 FKRHDGQAVTCEDFFAAMRDANDAEFANFLLWYSQAGTPRLKVTSSYSAETRTYSLEFGQEVPSTPGQPVKEPMFIPVAI 529 (926)
Q Consensus 450 l~~~~~~~~t~~Df~~~le~~sg~dL~~f~~W~~q~G~P~l~V~~~~~~~~~~~~l~l~Q~~~~~~~~~~~~~~~iPv~i 529 (926)
+++|++++++++||+++|++++|.|+++|++|++|+|+|.|+|+.+|+.+++.++|+++|.+++.++++++.+|+|||.+
T Consensus 400 l~r~~~~~at~~Df~~ale~asg~dL~~f~~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~~~~~~~~~~~~~iPl~i 479 (863)
T TIGR02414 400 FSRHDGQAVTCEDFVAAMEDASGRDLNQFRRWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTPPTPGQTEKKPLHIPIAV 479 (863)
T ss_pred HHHhCCCCCCHHHHHHHHHHHhCCCHHHHHHHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCCCCCCCCcCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999988888999999999887788889999999999
Q ss_pred EEEcCCCCccccceeecCCcccccCCCCCCcceEEEEEcCCccEEEEccCCCCCchhhhccCCCCeeecCCCCHHHHHhh
Q 036603 530 GLLNSSGKDMPLSSVYHNGKLQSLGSNNQPVYTTVLRVTKKEEEFVFSDISERPIPSILRGYSAPIRLESDLSDSDLFFL 609 (926)
Q Consensus 530 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ln~~~~~f~~~~~~~~p~~sllr~fsapv~~~~~~~~~~l~~l 609 (926)
++.+.+|+.+... ++|.. ..+.++.+++.+++|+|.+++++|++|++|+||+||++.+++++++|++|
T Consensus 480 ~l~~~~G~~~~~~---~~~~~---------~~~~~l~l~~~~~~f~f~~~~~~p~~sl~r~fsapv~l~~~~~~~~l~~l 547 (863)
T TIGR02414 480 GLLGPNGRKLMLS---LDGER---------DTTRVLELTEAEQTFVFEGIAEKPVPSLLRGFSAPVNLEYPYSDEDLLLL 547 (863)
T ss_pred EEEeCCCCEeeec---ccCCC---------CcceEEEEccCEEEEEEcCCCCCCeeeecCCCCceEEEeCCCCHHHHHHH
Confidence 9999999876643 33321 01357999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhhHHHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHhhcccCCH
Q 036603 610 LANDSDEFNRWEAGQVLARKLMLSLVADFQQNKPLVLNPKFVHGFRSMLGDSSLDKEFIAKAITLPGEGEIMDMMEVADP 689 (926)
Q Consensus 610 l~~d~D~f~r~~Ag~~l~~~~~l~l~~~~~~e~~~~v~~~~~~~l~~~~~~~~~~~~~~a~~l~lp~~~~l~~~~~~~dp 689 (926)
++||+|+||||+|+|.|+.+.++.++..+..+.+..+.+.++++++.+|.+..+|++|+|++|+||++++|+++++.+||
T Consensus 548 ~~~d~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~a~~l~lp~~~~l~~~~~~~d~ 627 (863)
T TIGR02414 548 LAHDSDPFNRWEAGQRLARRVILANIARAQGGEELPVDPAFIDALGKLLNDPHLDAAFKALLLALPSEAYLAELMENIDP 627 (863)
T ss_pred HhhCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHccCCCH
Confidence 99999999999999999999999999877666677788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHhHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHhCCChhHH
Q 036603 690 DAVHAVRTFIRKQLASELKAEFLTTVENNRSTGEYVFNHHNMARRALKNIALAYLASLEDADIVELALREYKTATNMTEQ 769 (926)
Q Consensus 690 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~n~~l~~l~~~~~~~~~~~~~~~~~~a~nmtd~ 769 (926)
++||.||++++++||.+++++|.++|+++...++|+++++++|+|+|||+||+||+..++++..++|.+||++|+||||+
T Consensus 628 ~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~~~~~~~~~~a~~mtd~ 707 (863)
T TIGR02414 628 DALHAAREFLRAAIARQLADDLLRLYDALQENGPYSVDPAAAGRRALRNACLSYLSAADDAEIRNLALEQFKSADNMTDR 707 (863)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999998766779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcchHHHHHHHHHHhcCCchHHHHHHHHhhcccCCCChHHHHHHHhcCCCCCCCCCcchhhhhhhcc-CC
Q 036603 770 FAALAAIVQKPGKIRDEVLDDFYGKWQHDYLVVNKWFALQAMSDIPGNVECVQRLLDHPAFDLRNPNKVYSLIGGFC-GS 848 (926)
Q Consensus 770 ~~al~~l~~~~~~~~~~~l~~f~~~~~~~~l~~~kw~~~~a~~~~~~~~~~v~~l~~~~~f~~~~pn~~r~l~~~f~-~n 848 (926)
++||++|+++++++|+++|++||++|++|||||||||++||++++++++++|++|++||+|+++||||||||||+|| +|
T Consensus 708 ~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n 787 (863)
T TIGR02414 708 LAALSALVHFESDFRERALAAFYQKWKDDPLVMDKWFALQATSPRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNN 787 (863)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHCCCchhHHHHHHHHhCCCcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CcccccCCCchhHHHHHHHHHhhhcChhHHhhhhhHhhhhhccCHHHHHHHHHHHHHHHhccCCCccHHHHHHhhh
Q 036603 849 PVNLHAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFSRWRRFDETRQNLAKAQLEMIMSANGLSENVFEIASKSL 924 (926)
Q Consensus 849 ~~~fh~~~g~gy~~~~~~~~~~~~~np~~a~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ls~~~~e~~~~~l 924 (926)
|.+||++||+||+||||+|++||++||||||||+++|++|+||+++||++|+++|+||++.++||+||+|||+|+|
T Consensus 788 ~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~~~r~~~m~~~l~~i~~~~~ls~d~~e~~~~~l 863 (863)
T TIGR02414 788 LVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLDPKRQELMKAALERIAAEENLSKDVREVVSKLL 863 (863)
T ss_pred cccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHhCcCCCccHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=6.9e-186 Score=1683.62 Aligned_cols=858 Identities=58% Similarity=0.983 Sum_probs=808.3
Q ss_pred CCCcccccCCCCCCCcceEEEEEEEEECCCeEEEEEEEEEEEec-cCCCCcEEEEcCCcEEEEEEEcCeEecccceEecC
Q 036603 53 DQPKEIFLKDYKMPNYYFDTVDLKFSLGEEKTIVSSKITVFPRV-EGSSSPLVLDGQDLKLVSIKVNGIELKEGDYHLDS 131 (926)
Q Consensus 53 ~~p~~~~~~~y~~p~~~~~~~~L~~~l~~~~~~v~g~i~i~~~~-~~~~~~l~L~~~~L~I~~v~i~G~~l~~~~y~~~~ 131 (926)
..|+.++++||++|+|++.||+|+|+++++..+++|+++|+.+. .++.+.|+||+.+|+|.+|.+||+++....|+.++
T Consensus 4 ~~~~~~~~~dy~~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~~~~~~~~~~~~ 83 (875)
T PRK14015 4 QQPQAIYLKDYRPPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQPLAPSAYELDE 83 (875)
T ss_pred CCCCcEehhccCCCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCEEcCccceEEcC
Confidence 36788999999999999999999999999999999999999875 34567899999999999999999987544688999
Q ss_pred CEEEEECCCCCeEEEEEEEEEeeccCCCCCceEeeCCeEEeccccCCcceeeccCCCCCCceeEEEEEEEcCCCceEEec
Q 036603 132 RHLTLQSPPNGAFTLEIVTEIYPQKNTSLEGIYKSSGNFCTQCEAEGFRKITFYQDRPDIMAKYKCYIEADKSLYPVLLS 211 (926)
Q Consensus 132 ~~L~I~l~~~~~~~L~I~~~~~p~~~~~~~Gly~s~~~~~Tq~ep~~aR~~fPc~DeP~~katf~l~I~~p~~~~~v~lS 211 (926)
+.|+|..+++ .++|+|.|+++|..++.+.|+|+++++++|||||++||+||||+|+|++||+|+++|++|++.|++++|
T Consensus 84 ~~L~I~~l~~-~~~l~I~y~~~P~~n~~l~Gly~s~~~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~~~~~~lS 162 (875)
T PRK14015 84 EGLTIENLPD-RFTLEIETEIDPEANTALEGLYRSGGMFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKAKYPVLLS 162 (875)
T ss_pred CEEEEecCCc-cEEEEEEEEEecCCCCCceeeEEECCEEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccccCeEEec
Confidence 9999996554 699999999999988889999999999999999999999999999999999999999999965678899
Q ss_pred CCccccceeccCCeEEEEEeCCcccccceeeeEeccceeEEeeeeecCCceEEEEEEccCCChhhHHHHHHHHHHHHHHH
Q 036603 212 NGNLIERGNLEGGRHYALWEDPFKKPCYLFALVAGQLESRDDIFVTRSGRKVSLRIWTPAQDLPKTAHAMYSLKAAMKWD 291 (926)
Q Consensus 212 NG~l~~~~~~~~g~~~~~f~~~~p~ptyl~a~~vG~f~~~~~~~~t~~g~~v~l~vy~~~~~~~~~~~al~~~~~~l~~~ 291 (926)
||+++++.+..+|+++++|+.++|||+|+|||++|+|+++++.+++.+|++|++++|++|+..++++++++.++++|+||
T Consensus 163 NG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~ 242 (875)
T PRK14015 163 NGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWD 242 (875)
T ss_pred CCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHH
Confidence 99999887667899999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred HHHhCCCCCCCcccEEEecCCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCCcccccCCCchh
Q 036603 292 EDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLS 371 (926)
Q Consensus 292 e~~fG~~YP~~k~~iV~vp~f~~gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn~Vt~~~w~dlW 371 (926)
|++||.|||+++|++|++|+|++|||||||+++|++.+++.+++..++.++..+..+|+||++||||||+|||+||+++|
T Consensus 243 E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLW 322 (875)
T PRK14015 243 EERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLS 322 (875)
T ss_pred HHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhh
Confidence 99999999999999999999999999999999999999999988888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhccCCCCCCCCCCCCCc------------cccchHHHHHHHHHHhhCH
Q 036603 372 LKEGLTVFRDQEFSSDMGSRTVKRIADVSKLRNYQFPQDAGPMAHPVRP------------HSYIKGAEVVRMYKTLLGS 439 (926)
Q Consensus 372 L~EGfAty~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~D~~~~~~pi~~------------~~Y~KGa~vl~ML~~~lG~ 439 (926)
||||||+|++++|.+++.+..+.++.+...++..++.+|+++++||+++ ++|.||++|||||+.+||+
T Consensus 323 LnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~p~~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGd 402 (875)
T PRK14015 323 LKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVRPDSYIEINNFYTATVYEKGAEVIRMLHTLLGE 402 (875)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCCCcchhhHHhcccchhhhHHHHHHHHHHHHhCH
Confidence 9999999999999999888777777777777777888999999999853 4799999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCcChHHHHHHHhcCCcceEEEEEEeecCCcEEEEEEEEecCCCCCCCC
Q 036603 440 QGFRKGMDLYFKRHDGQAVTCEDFFAAMRDANDAEFANFLLWYSQAGTPRLKVTSSYSAETRTYSLEFGQEVPSTPGQPV 519 (926)
Q Consensus 440 e~F~~~lr~Yl~~~~~~~~t~~Df~~~le~~sg~dL~~f~~W~~q~G~P~l~V~~~~~~~~~~~~l~l~Q~~~~~~~~~~ 519 (926)
+.|++||+.|+++|++++++++||+++|++++|.|+.+|++|++|+|+|.++|+.+|+..++.++|+++|.+++++++..
T Consensus 403 e~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~~~~~~~~ 482 (875)
T PRK14015 403 EGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFRRWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTPPTPGQPE 482 (875)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHHHHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998788899999999988888888
Q ss_pred CcceEEEEEEEEEcCCCCccccceeecCCcccccCCCCCCcceEEEEEcCCccEEEEccCCCCCchhhhccCCCCeeecC
Q 036603 520 KEPMFIPVAIGLLNSSGKDMPLSSVYHNGKLQSLGSNNQPVYTTVLRVTKKEEEFVFSDISERPIPSILRGYSAPIRLES 599 (926)
Q Consensus 520 ~~~~~iPv~i~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ln~~~~~f~~~~~~~~p~~sllr~fsapv~~~~ 599 (926)
+.+|+|||.+++.+.+|+.++.. ++|.. .+.++.+++.+++|+|.+++++|++|++|+||+||++.+
T Consensus 483 ~~~~~iPl~i~l~~~~G~~~~~~---~~~~~----------~~~~l~l~~~~q~f~f~~~~~~p~~s~~r~fsapv~~~~ 549 (875)
T PRK14015 483 KQPLHIPVAIGLLDPDGKELPLQ---LEGEP----------VERVLELTEAEQTFTFENVAERPVPSLLRGFSAPVKLEY 549 (875)
T ss_pred CceEEEEEEEEEEcCCCceeecc---ccCCc----------cceEEEEcCCeeEEEEcCCCCCceEEecCCCCCcEEEeC
Confidence 89999999999999888876542 33321 135899999999999999999999999999999999999
Q ss_pred CCCHHHHHhhHhcCCChhhHHHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHhcCCCCCHHHHHHHhCCCCHHH
Q 036603 600 DLSDSDLFFLLANDSDEFNRWEAGQVLARKLMLSLVADFQQNKPLVLNPKFVHGFRSMLGDSSLDKEFIAKAITLPGEGE 679 (926)
Q Consensus 600 ~~~~~~l~~ll~~d~D~f~r~~Ag~~l~~~~~l~l~~~~~~e~~~~v~~~~~~~l~~~~~~~~~~~~~~a~~l~lp~~~~ 679 (926)
+++++++++|++||+|.||||+|+|.|+.+.+++++... +.+..+.+.++++++.+|.++.+|++|+|++|+||++++
T Consensus 550 ~~~~~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~lp~~~~ 627 (875)
T PRK14015 550 DYSDEDLLFLMAHDSDPFNRWEAGQRLATRLLLANVARH--GQPLSLDEALIDAFRAVLLDESLDPAFAAELLTLPSEAE 627 (875)
T ss_pred CCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHccCCCHHH
Confidence 999999999999999999999999999999999988754 456677899999999999999999999999999999999
Q ss_pred HHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHhHHHHHHHHHHHHHHHhccCChhHHHHHHHH
Q 036603 680 IMDMMEVADPDAVHAVRTFIRKQLASELKAEFLTTVENNRSTGEYVFNHHNMARRALKNIALAYLASLEDADIVELALRE 759 (926)
Q Consensus 680 l~~~~~~~dp~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~n~~l~~l~~~~~~~~~~~~~~~ 759 (926)
|+++++.+||++||.||++++++||.+++++|.++|+++...++|+++++++|+|+|||+||+||+..++++..++|.+|
T Consensus 628 l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~~~~~~~ 707 (875)
T PRK14015 628 LAEQMEVIDPDAIHAAREALRRALATALKDELLALYEALQTDGPYSPDAEAAGRRALRNVCLSYLAAADDEEAAELAEAQ 707 (875)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 99999999999999999999999999999999999999876678999999999999999999999999999999999999
Q ss_pred HHhCCChhHHHHHHHHHHcCCcchHHHHHHHHHHhcCCchHHHHHHHHhhcccCCCChHHHHHHHhcCCCCCCCCCcchh
Q 036603 760 YKTATNMTEQFAALAAIVQKPGKIRDEVLDDFYGKWQHDYLVVNKWFALQAMSDIPGNVECVQRLLDHPAFDLRNPNKVY 839 (926)
Q Consensus 760 ~~~a~nmtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~l~~~kw~~~~a~~~~~~~~~~v~~l~~~~~f~~~~pn~~r 839 (926)
|++|+||||+++||++|+++++++|+++|++||++|++|||||||||++||+++.++++++|++|++||+|+++||||||
T Consensus 708 ~~~a~~mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~r 787 (875)
T PRK14015 708 FDQADNMTDRLAALSALVNADLPERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVR 787 (875)
T ss_pred HhhCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcc-CCCcccccCCCchhHHHHHHHHHhhhcChhHHhhhhhHhhhhhccCHHHHHHHHHHHHHHHhccCCCccHHH
Q 036603 840 SLIGGFC-GSPVNLHAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFSRWRRFDETRQNLAKAQLEMIMSANGLSENVFE 918 (926)
Q Consensus 840 ~l~~~f~-~n~~~fh~~~g~gy~~~~~~~~~~~~~np~~a~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ls~~~~e 918 (926)
||||+|| +||.+||++||+||+||||+|++||++||||||||+++|++|+||+++||++|+++|+||++.++||+||+|
T Consensus 788 al~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~~~~~~l~~i~~~~~ls~d~~e 867 (875)
T PRK14015 788 SLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQALMRAALERIAALPNLSKDVRE 867 (875)
T ss_pred HHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHHHhCcCCCccHHH
Confidence 9999998 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcC
Q 036603 919 IASKSLAA 926 (926)
Q Consensus 919 ~~~~~l~~ 926 (926)
||+|+|+.
T Consensus 868 ~~~~~l~~ 875 (875)
T PRK14015 868 IVSKALAA 875 (875)
T ss_pred HHHHHhcC
Confidence 99999964
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-117 Score=1087.56 Aligned_cols=822 Identities=38% Similarity=0.573 Sum_probs=727.9
Q ss_pred CCCCcccccCCCCCCCcceEEEEEEEEECCCeEEEEEEEEEEEec--cCCCCcEEEEcCCcEEEEEEEcCeEecccceEe
Q 036603 52 MDQPKEIFLKDYKMPNYYFDTVDLKFSLGEEKTIVSSKITVFPRV--EGSSSPLVLDGQDLKLVSIKVNGIELKEGDYHL 129 (926)
Q Consensus 52 ~~~p~~~~~~~y~~p~~~~~~~~L~~~l~~~~~~v~g~i~i~~~~--~~~~~~l~L~~~~L~I~~v~i~G~~l~~~~y~~ 129 (926)
..++...++.+|.+|.+.+++++|+|++++++..++|++++.... ..+..+|+||+.+|+|.+|++||++... .+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~~~-~~~~ 84 (859)
T COG0308 6 LRSGRAALSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKALTA-WYRL 84 (859)
T ss_pred cccccccccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccccc-cccc
Confidence 345666788899988887789999999999889999999999865 2233349999999999999999986542 3566
Q ss_pred cCCEEEEECCC------CCeEEEEEEEEEeec-cCCCCCceEeeCC----eEEeccccCCcceeeccCCCCCCceeEEEE
Q 036603 130 DSRHLTLQSPP------NGAFTLEIVTEIYPQ-KNTSLEGIYKSSG----NFCTQCEAEGFRKITFYQDRPDIMAKYKCY 198 (926)
Q Consensus 130 ~~~~L~I~l~~------~~~~~L~I~~~~~p~-~~~~~~Gly~s~~----~~~Tq~ep~~aR~~fPc~DeP~~katf~l~ 198 (926)
+++.++|...+ ..++++.|.+.+++. .++.+.|+|++.+ ++|||||+++||+||||+|+|++||+|+++
T Consensus 85 ~~~~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~~~~~~TQ~Ea~~aR~~fpc~D~P~~katf~~~ 164 (859)
T COG0308 85 DGDALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGGKPYLITQCEAEGARRIFPCIDEPDVKATFTLT 164 (859)
T ss_pred cCccceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCCCeeEEeecccCCCceeeecCCCCCCcceeEEE
Confidence 66666665421 245777777777644 4488999999765 499999999999999999999999999999
Q ss_pred EEEcCCCceEEecCCccccceeccCCeEEEEEeCCcccccceeeeEeccceeEEeeeeecCCceEEEEEEccCCChhhHH
Q 036603 199 IEADKSLYPVLLSNGNLIERGNLEGGRHYALWEDPFKKPCYLFALVAGQLESRDDIFVTRSGRKVSLRIWTPAQDLPKTA 278 (926)
Q Consensus 199 I~~p~~~~~v~lSNG~l~~~~~~~~g~~~~~f~~~~p~ptyl~a~~vG~f~~~~~~~~t~~g~~v~l~vy~~~~~~~~~~ 278 (926)
|++++++ .++|||+++......+|+++++|.+++||||||||+++|+|++.++.+.+.+ +++++++|++++..+++.
T Consensus 165 i~~~k~~--~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~-~~v~l~iy~~~g~~~~a~ 241 (859)
T COG0308 165 IRADKGP--KLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRS-RDVPLEIYVPPGVLDRAK 241 (859)
T ss_pred EEecCcc--eeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCC-CCeeEEEEecCcchhhhh
Confidence 9999955 9999999999988888999999999999999999999999999998877666 789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcccEEEecCCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhh
Q 036603 279 HAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWT 358 (926)
Q Consensus 279 ~al~~~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWf 358 (926)
++++.++++|+|||++||+|||+++ ++|+||+|++|||||||+++|++.+++.+++.+++.++++++.+|+||+|||||
T Consensus 242 ~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaHqWf 320 (859)
T COG0308 242 YALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAHQWF 320 (859)
T ss_pred hhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhc-cCCCCCCCCCCCCC--------------cccc
Q 036603 359 GNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIADVSKLRNY-QFPQDAGPMAHPVR--------------PHSY 423 (926)
Q Consensus 359 Gn~Vt~~~w~dlWL~EGfAty~~~~~~~~~~~~~~~r~~~~~~l~~~-~~~~D~~~~~~pi~--------------~~~Y 423 (926)
||+|||+||+++|||||||+|+++++.+++++...+++.++...+.. ++.+|+++++|||+ .++|
T Consensus 321 GnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y 400 (859)
T COG0308 321 GNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDAIVY 400 (859)
T ss_pred cceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcchhhc
Confidence 99999999999999999999999999999999788888887777765 89999999999975 3589
Q ss_pred chHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCcChHHHH-HHHhcCCcceEEEEEEeecCCcE
Q 036603 424 IKGAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFFAAMRDANDAEFANFL-LWYSQAGTPRLKVTSSYSAETRT 502 (926)
Q Consensus 424 ~KGa~vl~ML~~~lG~e~F~~~lr~Yl~~~~~~~~t~~Df~~~le~~sg~dL~~f~-~W~~q~G~P~l~V~~~~~~~~~~ 502 (926)
.||++|+|||+.++|++.|++||+.||++|+|++++++|||+++++++|+|+++++ +|++|+|+|++.|+..++. .
T Consensus 401 ~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v~~~~~~---~ 477 (859)
T COG0308 401 EKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTVSVRYDD---F 477 (859)
T ss_pred chhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceeeeeeccc---c
Confidence 99999999999999999999999999999999999999999999999999999776 9999999999999998875 4
Q ss_pred EEEEEEEecCCCCCCCCCcceEEEEEEEEEcCCCCccccceeecCCcccccCCCCCCcceEEEEEcCCccEEEEccCCCC
Q 036603 503 YSLEFGQEVPSTPGQPVKEPMFIPVAIGLLNSSGKDMPLSSVYHNGKLQSLGSNNQPVYTTVLRVTKKEEEFVFSDISER 582 (926)
Q Consensus 503 ~~l~l~Q~~~~~~~~~~~~~~~iPv~i~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ln~~~~~f~~~~~~~~ 582 (926)
++++++|..++. +.++.+|+||+.+.+.+..| ...+.+.++.+++++.+.+.+
T Consensus 478 ~~l~~~q~~~~~--~~~~~~~~iPl~~~~~~~~~-------------------------~~~~~~~~~~~t~~~~~~~~~ 530 (859)
T COG0308 478 FKLTQKQFTPPG--QEEKRPWPIPLAIKLLDGGG-------------------------VKVLLLTEGEQTVTFELVGIP 530 (859)
T ss_pred EEEEEEEeccCC--CccCceeeeccEEEecCCCC-------------------------ceeeeeeccceEEEEecccCC
Confidence 567777776654 67788999999999865433 125678899999999999999
Q ss_pred CchhhhccCCCCeeecCCCCHHHHHhhHhcCCChhhHHHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHhcCCC
Q 036603 583 PIPSILRGYSAPIRLESDLSDSDLFFLLANDSDEFNRWEAGQVLARKLMLSLVADFQQNKPLVLNPKFVHGFRSMLGDSS 662 (926)
Q Consensus 583 p~~sllr~fsapv~~~~~~~~~~l~~ll~~d~D~f~r~~Ag~~l~~~~~l~l~~~~~~e~~~~v~~~~~~~l~~~~~~~~ 662 (926)
|++++++++++|+.+..+++.+++.+++.|++ ||++.+.+........+..............+...+........
T Consensus 531 ~~~~~~~~~~~~~~~~~~y~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 606 (859)
T COG0308 531 PFPSLKVNDSAPVFYRVDYSDQSLSKLLQHDP----RLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVS 606 (859)
T ss_pred ccceeeccCCccceEEEecCHHHHHHHHhhhh----hhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHH
Confidence 99999999999999999999999999999875 99999987766555555433222111111223344444445567
Q ss_pred CCHHHHHHHhCCCCHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCHhHHHHHHHHHHHH
Q 036603 663 LDKEFIAKAITLPGEGEIMDMMEVADPDAVHAVRTFIRKQLASELKAEFLTTVENNR-STGEYVFNHHNMARRALKNIAL 741 (926)
Q Consensus 663 ~~~~~~a~~l~lp~~~~l~~~~~~~dp~~~~~~~~~~~~~la~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~r~l~n~~l 741 (926)
++++|.++++.||++..+. ..+||++++..++.+.+..+.+..+++..+|.... ....|..+...++.|+++|+|+
T Consensus 607 ~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (859)
T COG0308 607 LEQAFKSLLLALPSFADLE---KFIDPDAIDQLRDALVRLGAEAVADDLLALYHIGALSQSLYEEDASLAALRALRNACL 683 (859)
T ss_pred HHHHHHHHHHhcccchhhh---hhcCHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhccccccccHHHHHHHHHHHHHH
Confidence 7899999999999998776 67999999999999999999999999999998764 3556888888999999999999
Q ss_pred HHHhccCChhHHHHHHHHHHhCCChhHHHHHHHHHHcC-CcchHHHHHHHHHHhcCCchHHHHHHHHhhcccCCCChHHH
Q 036603 742 AYLASLEDADIVELALREYKTATNMTEQFAALAAIVQK-PGKIRDEVLDDFYGKWQHDYLVVNKWFALQAMSDIPGNVEC 820 (926)
Q Consensus 742 ~~l~~~~~~~~~~~~~~~~~~a~nmtd~~~al~~l~~~-~~~~~~~~l~~f~~~~~~~~l~~~kw~~~~a~~~~~~~~~~ 820 (926)
.++....+++...++..+|..+.|||| ||.+|.+. ..+.+++++.+|.+.|..++++++|||++|+..+...++++
T Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 760 (859)
T COG0308 684 ERLEKQEDPELRSLVVKAYAAAGNMTD---ALKALLEAYQSPTRAEALRDFADAFGRFPLVMDKWFALQAISPGDTVLEQ 760 (859)
T ss_pred hhcccccChhHHHHHHHHHHHhcChHH---HHHHHHHhcccCChHHHHHHHHHHhcccccHHHHHHHHHhcCCCcchHHH
Confidence 999998888989999999999999999 88888876 45556699999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCcchhhhhhhcc-CCCcccccCCCchhHHHHHHHHHhhhcChhHHhhhhhHhhhhhccCHHHHHHH
Q 036603 821 VQRLLDHPAFDLRNPNKVYSLIGGFC-GSPVNLHAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFSRWRRFDETRQNLA 899 (926)
Q Consensus 821 v~~l~~~~~f~~~~pn~~r~l~~~f~-~n~~~fh~~~g~gy~~~~~~~~~~~~~np~~a~r~~~~~~~~~~~~~~~~~~~ 899 (926)
++.++.|+.|...|||++|+++++|. .||..||+.+|+||++.+.+|+.+++.|||.+.|.+.+|.+|++++ .++.+|
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 839 (859)
T COG0308 761 DIGLMIHAAFEAPNPNEARWLYGTFAFENPALLHALDGSGYRFLGVIVLELNIFNPQLALRKIEEFLELKKLK-ALERLI 839 (859)
T ss_pred HHHHHhhhhhhCCcchhhHHHHHHHhhhchhhhhhhccccccccceEEEEeeccchhhHHHHHHHHhhhhcch-hHHHHH
Confidence 99999999999999999999999999 7999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhccCCCccHHHH
Q 036603 900 KAQLEMIMSANGLSENVFEI 919 (926)
Q Consensus 900 ~~~l~~~~~~~~ls~~~~e~ 919 (926)
++.|++|....+|++|++|+
T Consensus 840 ~~~l~~i~~~~~l~~~~~~~ 859 (859)
T COG0308 840 REALETIAARERLSKDLAEK 859 (859)
T ss_pred HHHHHHHHHHHhhhhhhccC
Confidence 99999999999999998763
No 4
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-96 Score=899.83 Aligned_cols=798 Identities=22% Similarity=0.291 Sum_probs=631.7
Q ss_pred CCCCCCCcceE-EEEEEEEECCCeEEEEEEEEEEEeccCCCCcEEEEcCCcEEEEEEEcCeEec------ccceEecC-C
Q 036603 61 KDYKMPNYYFD-TVDLKFSLGEEKTIVSSKITVFPRVEGSSSPLVLDGQDLKLVSIKVNGIELK------EGDYHLDS-R 132 (926)
Q Consensus 61 ~~y~~p~~~~~-~~~L~~~l~~~~~~v~g~i~i~~~~~~~~~~l~L~~~~L~I~~v~i~G~~l~------~~~y~~~~-~ 132 (926)
..|+.|....+ ||+|.+.++-....+.|++.|.+....+++.|+||+.+++|.++.+...... ...++... .
T Consensus 27 ~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (882)
T KOG1046|consen 27 NEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEKEQEE 106 (882)
T ss_pred ccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCcccccccccccccce
Confidence 44444444333 6678888777777799999999888878899999999999999988432110 00111111 4
Q ss_pred EEEEEC----CCCCeEEEEEEEEEeeccCCCCCceEeeC---------CeEEeccccCCcceeeccCCCCCCceeEEEEE
Q 036603 133 HLTLQS----PPNGAFTLEIVTEIYPQKNTSLEGIYKSS---------GNFCTQCEAEGFRKITFYQDRPDIMAKYKCYI 199 (926)
Q Consensus 133 ~L~I~l----~~~~~~~L~I~~~~~p~~~~~~~Gly~s~---------~~~~Tq~ep~~aR~~fPc~DeP~~katf~l~I 199 (926)
.+.+.+ ..+..++|+|.|.+ .+++...|+|+++ +.++|||||..||++|||||||++||+|+++|
T Consensus 107 ~l~~~~~~~l~~~~~y~L~i~f~g--~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl 184 (882)
T KOG1046|consen 107 TLVFPLNETLLAGSSYTLTIEFTG--KLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTITL 184 (882)
T ss_pred EEEEEcccccccCCeEEEEEEEeE--eecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEEEE
Confidence 566664 45667999999886 6788889999976 37899999999999999999999999999999
Q ss_pred EEcCCCceEEecCCccccceeccCCeEEEEEeCCcccccceeeeEeccceeEEeeeeecCCceEEEEEEccCCChhhHHH
Q 036603 200 EADKSLYPVLLSNGNLIERGNLEGGRHYALWEDPFKKPCYLFALVAGQLESRDDIFVTRSGRKVSLRIWTPAQDLPKTAH 279 (926)
Q Consensus 200 ~~p~~~~~v~lSNG~l~~~~~~~~g~~~~~f~~~~p~ptyl~a~~vG~f~~~~~~~~t~~g~~v~l~vy~~~~~~~~~~~ 279 (926)
.+|+++ +++|||+.+++...++|+++.+|+.+++||+|++||+||+|...+.. +.+| |++++|++|+..+++++
T Consensus 185 ~hp~~~--~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~--~~~~--v~vrv~a~p~~~~~~~~ 258 (882)
T KOG1046|consen 185 VHPKGY--TALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETI--TKSG--VPVRVYARPEKINQGQF 258 (882)
T ss_pred EecCCc--eEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceee--cCCC--ceEEEEeChHHhhHHHH
Confidence 999988 99999999999888889999999999999999999999999998853 3334 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcccEEEecCCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhC
Q 036603 280 AMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTG 359 (926)
Q Consensus 280 al~~~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfG 359 (926)
+++.+++.|+|||++||+|||++|+|+|++|+|.+||||||||++|++..++++|..++..+++++..+||||+||||||
T Consensus 259 al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFG 338 (882)
T KOG1046|consen 259 ALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFG 338 (882)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCchhHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHhhhccCCCCCCCCCCCCC--------------ccccc
Q 036603 360 NRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRT-VKRIADVSKLRNYQFPQDAGPMAHPVR--------------PHSYI 424 (926)
Q Consensus 360 n~Vt~~~w~dlWL~EGfAty~~~~~~~~~~~~~-~~r~~~~~~l~~~~~~~D~~~~~~pi~--------------~~~Y~ 424 (926)
|+||++||+|+|||||||+|+++.......+.. ..+. .+.......+..|+..++||+. .++|.
T Consensus 339 NLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~-~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~ 417 (882)
T KOG1046|consen 339 NLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQ-FLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQ 417 (882)
T ss_pred CcccHhhhhhhhhcccHHHHHHHHhhccCCcchhhHHH-HHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhh
Confidence 999999999999999999999988887544332 1111 2222233456778888888864 46899
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCcChHHHH-HHHhcCCcceEEEEEEeecCCcEE
Q 036603 425 KGAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFFAAMRDANDAEFANFL-LWYSQAGTPRLKVTSSYSAETRTY 503 (926)
Q Consensus 425 KGa~vl~ML~~~lG~e~F~~~lr~Yl~~~~~~~~t~~Df~~~le~~sg~dL~~f~-~W~~q~G~P~l~V~~~~~~~~~~~ 503 (926)
||++|||||+..+|++.|++||+.|+.+|+|++++++|||++|+...+.|++.|+ .|+.|+|||+++|+..++
T Consensus 418 KGasvlRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~------ 491 (882)
T KOG1046|consen 418 KGASVLRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGD------ 491 (882)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCC------
Confidence 9999999999999999999999999999999999999999999988999999998 899999999999998765
Q ss_pred EEEEEEecCCCCC--CCCCcceEEEEEEEEEcCCCCccccceeecCCcccccCCCCCCcceEEEEEcCCccEEEEccCCC
Q 036603 504 SLEFGQEVPSTPG--QPVKEPMFIPVAIGLLNSSGKDMPLSSVYHNGKLQSLGSNNQPVYTTVLRVTKKEEEFVFSDISE 581 (926)
Q Consensus 504 ~l~l~Q~~~~~~~--~~~~~~~~iPv~i~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ln~~~~~f~~~~~~~ 581 (926)
+++++|.++...+ ++....|+||+++...+. |.. . ..++......+..+. ...|+++|.++.|||||+|++
T Consensus 492 ~~~l~Q~rf~~~~~~~~~~~~w~iPl~~~~~~~-~~~-~--~~~~~~~~~~~~l~~---~~~wi~~N~~~~g~yRV~Yd~ 564 (882)
T KOG1046|consen 492 SLTLTQERFLSDPDPSEDNYLWWIPLTYTTSGS-GSV-P--KFWLSSKSTTIKLPE---SDQWIKVNLEQTGYYRVNYDD 564 (882)
T ss_pred EEEEehhhhccCCCccccCcccceeEEEEcCCC-Ccc-c--eeeecCCCcceecCC---CCeEEEEeCCcceEEEEEeCH
Confidence 7899999986543 345568999999987543 221 1 122332222222222 126999999999999999999
Q ss_pred CCchhhhccCCCCeeecCCCCHHHHHhhHhcCCChhhHHHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHhc--
Q 036603 582 RPIPSILRGYSAPIRLESDLSDSDLFFLLANDSDEFNRWEAGQVLARKLMLSLVADFQQNKPLVLNPKFVHGFRSMLG-- 659 (926)
Q Consensus 582 ~p~~sllr~fsapv~~~~~~~~~~l~~ll~~d~D~f~r~~Ag~~l~~~~~l~l~~~~~~e~~~~v~~~~~~~l~~~~~-- 659 (926)
..|..++..+.. ...++..+|++|+ +|.|+++.+|+. .....|+++.++.+|+++.+|..++..+..+..
T Consensus 565 ~~w~~l~~~l~~----~~~~~~~~Ra~li---~D~~~la~~~~~-~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~~~ 636 (882)
T KOG1046|consen 565 ENWALLIEQLKN----HESLSVIDRAQLI---NDAFALARAGRL-PYSIALNLISYLKNETDYVPWSAAIRSLYKLHSLE 636 (882)
T ss_pred HHHHHHHHHHhh----cCccCHhHHHHHH---HHHHHHHhcCCC-chHHHHHHHHHHhcccccchHHHHHHHHHHHhhcc
Confidence 999999988876 3578999999999 899999999987 888999999999999999999988777766664
Q ss_pred CCCCCHHHHHHH--hCCCCHHHHHhhcccCCHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHhhcCCCCCCCCHhHHHH
Q 036603 660 DSSLDKEFIAKA--ITLPGEGEIMDMMEVADPDAVHAVRTFIRKQLA-SELKA---EFLTTVENNRSTGEYVFNHHNMAR 733 (926)
Q Consensus 660 ~~~~~~~~~a~~--l~lp~~~~l~~~~~~~dp~~~~~~~~~~~~~la-~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~ 733 (926)
..+....++..+ +-.|.++.+.......+. .....|..+..... ....+ .....|...... ...-.
T Consensus 637 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~-------~~~ip 708 (882)
T KOG1046|consen 637 DTEIYSKFKEFVKKLILPIFEKLGWSDGADSS-LDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAG-------TNPIP 708 (882)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCccccch-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCC
Confidence 223333333333 334666666655444443 33334443333222 22222 223333332211 11113
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhCCChhHHHHHHHHHHcCCcch-HHHHHHHHHHhcCCchHHHHHHHHhhccc
Q 036603 734 RALKNIALAYLASLEDADIVELALREYKTATNMTEQFAALAAIVQKPGKI-RDEVLDDFYGKWQHDYLVVNKWFALQAMS 812 (926)
Q Consensus 734 r~l~n~~l~~l~~~~~~~~~~~~~~~~~~a~nmtd~~~al~~l~~~~~~~-~~~~l~~f~~~~~~~~l~~~kw~~~~a~~ 812 (926)
..||.++..+.+..+.++.++...+.|+.+++..++...+.+|.|...+. .+.+| ++.-. ......-|.++.+|+.+
T Consensus 709 ~~lr~~vy~~~~~~g~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l-~~~~~-~~~v~~qd~~~~~~~~~ 786 (882)
T KOG1046|consen 709 PDLREVVYCTAVQFGTEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLL-DLAFD-AENVRDQDVLTLLQGIS 786 (882)
T ss_pred hhhhhhhhhHHHHhcCHhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHH-HHhcc-cccccchhHHHHHHHHh
Confidence 34677777777777789999999999999999999999999999988775 44555 44444 68889999999999999
Q ss_pred CCCChHHHHHHHhcCCCCCCCCC---cchhhhhhhccCCCcccccCCCchhHHHHHHHHHhhhcChhHHhhhhhHhhhhh
Q 036603 813 DIPGNVECVQRLLDHPAFDLRNP---NKVYSLIGGFCGSPVNLHAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFSRWR 889 (926)
Q Consensus 813 ~~~~~~~~v~~l~~~~~f~~~~p---n~~r~l~~~f~~n~~~fh~~~g~gy~~~~~~~~~~~~~np~~a~r~~~~~~~~~ 889 (926)
.++...+...+.+.+.-.++.+. ++..+-+..+..+....+.+-++.++|+++..........|.|-+.+..-.+|.
T Consensus 787 ~~~~g~~~a~~~~~~n~~~l~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~le~~~~ni~W~ 866 (882)
T KOG1046|consen 787 GNPRGVELAWKFLQDNWKELLNRYGNNFELSRLISFITEPFATEEKLDEVEKFFADIPKTGAERALQQALETVKANIQWV 866 (882)
T ss_pred cCcccHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhHH
Confidence 98887777777777766666555 455555556666666777788999999999998888888999999999999999
Q ss_pred ccCHHHHHHHH
Q 036603 890 RFDETRQNLAK 900 (926)
Q Consensus 890 ~~~~~~~~~~~ 900 (926)
+ ..++.+.+
T Consensus 867 ~--~~~~~l~~ 875 (882)
T KOG1046|consen 867 E--RNEENLTQ 875 (882)
T ss_pred H--hhHHHHHH
Confidence 9 44444443
No 5
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=100.00 E-value=1.9e-94 Score=799.49 Aligned_cols=365 Identities=50% Similarity=0.880 Sum_probs=314.2
Q ss_pred CcEEEEEEEEecCCCCCCCCCcceEEEEEEEEEcCCCCccccceeecCCcccccCCCCCCcceEEEEEcCCccEEEEccC
Q 036603 500 TRTYSLEFGQEVPSTPGQPVKEPMFIPVAIGLLNSSGKDMPLSSVYHNGKLQSLGSNNQPVYTTVLRVTKKEEEFVFSDI 579 (926)
Q Consensus 500 ~~~~~l~l~Q~~~~~~~~~~~~~~~iPv~i~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ln~~~~~f~~~~~ 579 (926)
.++|+|+++|++++++||++|.||+|||.+++++++|+.++.+ .+.+++|++.+++|+|.|+
T Consensus 2 ~~~~~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~------------------~~~vl~L~~~~qtf~F~~v 63 (367)
T PF11940_consen 2 AGTYTLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLR------------------LERVLELTEAEQTFTFEGV 63 (367)
T ss_dssp TTEEEEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEE------------------ESEEEEE-SSEEEEEES--
T ss_pred CcEEEEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCC------------------CCceEEeccCeEEEEEeCC
Confidence 4689999999999999999999999999999999999987653 1358999999999999999
Q ss_pred CCCCchhhhccCCCCeeecCCCCHHHHHhhHhcCCChhhHHHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHhc
Q 036603 580 SERPIPSILRGYSAPIRLESDLSDSDLFFLLANDSDEFNRWEAGQVLARKLMLSLVADFQQNKPLVLNPKFVHGFRSMLG 659 (926)
Q Consensus 580 ~~~p~~sllr~fsapv~~~~~~~~~~l~~ll~~d~D~f~r~~Ag~~l~~~~~l~l~~~~~~e~~~~v~~~~~~~l~~~~~ 659 (926)
+++|+||++|+|||||+++++++++||++|++||+|+||||+|+|.|+.++++.++....++.+..+.+.++++++.+|.
T Consensus 64 ~~~PvpSllRgFSAPV~l~~~~s~~eL~~L~~~D~D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~ 143 (367)
T PF11940_consen 64 SEKPVPSLLRGFSAPVKLEYDYSDEELAFLAAHDSDPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLA 143 (367)
T ss_dssp -S--EEEESTTG-SSSEEE----HHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH
T ss_pred CCCceeehhcCcccceEecCCCCHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999988776667788899999999999
Q ss_pred CCCCCHHHHHHHhCCCCHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHhHHHHHHHHHH
Q 036603 660 DSSLDKEFIAKAITLPGEGEIMDMMEVADPDAVHAVRTFIRKQLASELKAEFLTTVENNRSTGEYVFNHHNMARRALKNI 739 (926)
Q Consensus 660 ~~~~~~~~~a~~l~lp~~~~l~~~~~~~dp~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~n~ 739 (926)
+..+||+|+|++|+||++++|+++++.+||++||.||++++++||.+++++|..+|+++...++|+++++++|+|+|||+
T Consensus 144 d~~~d~a~~A~~L~LPs~~~l~~~~~~iDp~~i~~ar~~l~~~la~~l~~~l~~~y~~~~~~~~y~~~~~~~g~RaLkn~ 223 (367)
T PF11940_consen 144 DDDLDPAFKALLLTLPSESELAEQMENIDPDAIHAAREALRRALAQALRDELLALYQALAATGPYSPDAEAAGRRALKNL 223 (367)
T ss_dssp -SSS-HHHHHHHTS---HHHHCTT-SSB-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHTTTTT-SHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHccCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998667789999999999999999
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCChhHHHHHHHHHHcCCcchHHHHHHHHHHhcCCchHHHHHHHHhhcccCCCChHH
Q 036603 740 ALAYLASLEDADIVELALREYKTATNMTEQFAALAAIVQKPGKIRDEVLDDFYGKWQHDYLVVNKWFALQAMSDIPGNVE 819 (926)
Q Consensus 740 ~l~~l~~~~~~~~~~~~~~~~~~a~nmtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~l~~~kw~~~~a~~~~~~~~~ 819 (926)
||+||+..+++++.++|.+||++|+|||||+|||++|+++++++|+++|++||++|++|||||||||++||+++.+++++
T Consensus 224 ~L~yL~~~~~~~~~~la~~qy~~A~nMTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~~~~l~ 303 (367)
T PF11940_consen 224 CLSYLAAADDPEAAELAQEQYKSADNMTDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPSPDTLE 303 (367)
T ss_dssp HHHHHHHCTCTHHHHHHHHHHHHSSSHHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--STTHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCcchhhhhhhcc-CCCcccccCCCchhHHHHHHHHHhhhcChhHHhhhh
Q 036603 820 CVQRLLDHPAFDLRNPNKVYSLIGGFC-GSPVNLHAKDGSGYKFLGEMVVQLDKINPQVASRMV 882 (926)
Q Consensus 820 ~v~~l~~~~~f~~~~pn~~r~l~~~f~-~n~~~fh~~~g~gy~~~~~~~~~~~~~np~~a~r~~ 882 (926)
+|++|++||+|+++||||||||||+|+ +||.+||++||+||+||+|+|++||++||||||||+
T Consensus 304 ~V~~L~~Hp~F~~~NPNrvRaLig~Fa~~N~~~FH~~dG~GY~flad~I~~LD~~NPQvAARl~ 367 (367)
T PF11940_consen 304 RVKKLMQHPAFDLKNPNRVRALIGAFAQANPVQFHAADGSGYEFLADQIIKLDKINPQVAARLA 367 (367)
T ss_dssp HHHHHTTSTTTTTT-HHHHHHHHHHHHHC-HHHHT-TTSHHHHHHHHHHHHHHTT-HHHHHHHG
T ss_pred HHHHHhcCCCCCCCCCcHHHHHHHHHHhcChhhhcCCCCcHHHHHHHHHHHHcCcCHHHHhccC
Confidence 999999999999999999999999999 999999999999999999999999999999999996
No 6
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=6.3e-87 Score=822.83 Aligned_cols=696 Identities=19% Similarity=0.234 Sum_probs=509.7
Q ss_pred CCcceEEEEEEEEECCC--eEEEEEEEEEEEeccCCCCcEEEEcCCcEEEEEEEcCeEecccceEecCCEEEEECCCCCe
Q 036603 66 PNYYFDTVDLKFSLGEE--KTIVSSKITVFPRVEGSSSPLVLDGQDLKLVSIKVNGIELKEGDYHLDSRHLTLQSPPNGA 143 (926)
Q Consensus 66 p~~~~~~~~L~~~l~~~--~~~v~g~i~i~~~~~~~~~~l~L~~~~L~I~~v~i~G~~l~~~~y~~~~~~L~I~l~~~~~ 143 (926)
-.+++.||+|++++.++ ...++|+++|.++..++.+.|+||+.+++|++|++||+ ++ ..+..++..+.+...+.+.
T Consensus 12 ~~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~-~~-~~~~~~~~~i~l~~l~~g~ 89 (831)
T TIGR02412 12 SLITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGI-LD-VAPVYDGSRIPLPGLLTGE 89 (831)
T ss_pred HhccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCc-cc-CccccCCCEEEccCCCCCc
Confidence 34567789999998643 45678888888776556789999999999999999997 22 2344566666664333347
Q ss_pred EEEEEEEEEeeccCCCCCceEee----C--CeEEeccccCCcceeeccCCCCCCceeEEEEEEEcCCCceEEecCCcccc
Q 036603 144 FTLEIVTEIYPQKNTSLEGIYKS----S--GNFCTQCEAEGFRKITFYQDRPDIMAKYKCYIEADKSLYPVLLSNGNLIE 217 (926)
Q Consensus 144 ~~L~I~~~~~p~~~~~~~Gly~s----~--~~~~Tq~ep~~aR~~fPc~DeP~~katf~l~I~~p~~~~~v~lSNG~l~~ 217 (926)
++|+|.|.+. .+....|+|+. + .+++|||||.+||+||||||+|++||+|+++|++|+++ +++|||++.+
T Consensus 90 ~~l~i~~~~~--~~~~~~Gl~~~~~~~~g~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~--~v~sNg~~~~ 165 (831)
T TIGR02412 90 NTLRVEATRA--YTNTGEGLHRFVDPVDGEVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDW--TVISNSRETD 165 (831)
T ss_pred eEEEEEEEEE--ecCCCceEEEEEeCCCCeEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCc--eEECCCcccc
Confidence 8899988763 45567899862 2 36799999999999999999999999999999999998 8999999876
Q ss_pred ceeccCCeEEEEEeCCcccccceeeeEeccceeEEeeeeecCCceEEEEEEccCCChhh--HHHHHHHHHHHHHHHHHHh
Q 036603 218 RGNLEGGRHYALWEDPFKKPCYLFALVAGQLESRDDIFVTRSGRKVSLRIWTPAQDLPK--TAHAMYSLKAAMKWDEDVF 295 (926)
Q Consensus 218 ~~~~~~g~~~~~f~~~~p~ptyl~a~~vG~f~~~~~~~~t~~g~~v~l~vy~~~~~~~~--~~~al~~~~~~l~~~e~~f 295 (926)
... .+|+++++|+.++|||+|+|||++|+|..++. + ++++++++|++|+..+. .+++++.++++|+|||++|
T Consensus 166 ~~~-~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~---~--~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~f 239 (831)
T TIGR02412 166 VTP-EPADRRWEFPETPKLSTYLTAVAAGPYHSVQD---E--SRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKF 239 (831)
T ss_pred ccc-cCCCeEEEecCCCCcccceEEEEEeceEEEee---c--CCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 654 45677889999999999999999999998874 2 24589999999987654 5689999999999999999
Q ss_pred CCCCCCCcccEEEecCCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCCcccccCCCchhHHHH
Q 036603 296 GLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEG 375 (926)
Q Consensus 296 G~~YP~~k~~iV~vp~f~~gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn~Vt~~~w~dlWL~EG 375 (926)
|+|||++|+++|++|+|.+|||||||+++|++.+++.+. .+...++.+..+|+||+|||||||+|||+||+++|||||
T Consensus 240 g~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~~l~~~~--~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEG 317 (831)
T TIGR02412 240 GYPYPFKKYDQIFVPEFNAGAMENAGCVTFAENFLHRAE--ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNES 317 (831)
T ss_pred CCCCCcccCCEEEcCCCCCCcccccceeeechhhccCCc--CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHH
Confidence 999999999999999999999999999999999665432 345667788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHH-H-HHHHHHHHhhhccCCCCCCCCCCCCC--------------ccccchHHHHHHHHHHhhCH
Q 036603 376 LTVFRDQEFSSDMGSRT-V-KRIADVSKLRNYQFPQDAGPMAHPVR--------------PHSYIKGAEVVRMYKTLLGS 439 (926)
Q Consensus 376 fAty~~~~~~~~~~~~~-~-~r~~~~~~l~~~~~~~D~~~~~~pi~--------------~~~Y~KGa~vl~ML~~~lG~ 439 (926)
||+|++.++.++..+.. . .... .......+..|..+.+||+. .++|.||++|||||+..||+
T Consensus 318 FAty~e~~~~~~~~~~~~~~~~f~--~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGe 395 (831)
T TIGR02412 318 FAEYMGTLASAEATEYTDAWTTFA--AQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGE 395 (831)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHH--HHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCH
Confidence 99999999888765421 1 1111 11122334556666777752 47999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCcChHHHH-HHHhcCCcceEEEEEEeecCCcEEEEEEEEecCCCCCCC
Q 036603 440 QGFRKGMDLYFKRHDGQAVTCEDFFAAMRDANDAEFANFL-LWYSQAGTPRLKVTSSYSAETRTYSLEFGQEVPSTPGQP 518 (926)
Q Consensus 440 e~F~~~lr~Yl~~~~~~~~t~~Df~~~le~~sg~dL~~f~-~W~~q~G~P~l~V~~~~~~~~~~~~l~l~Q~~~~~~~~~ 518 (926)
+.|++|||.|+++|+|++++++|||++|++++|+|+++|+ +|++++|+|.|+|+..++.+ .++ .+.|... +
T Consensus 396 e~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~--~~~-~~~~~~~---~-- 467 (831)
T TIGR02412 396 EAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGG--VVS-ALYPESS---G-- 467 (831)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCC--eEE-EEEEecC---C--
Confidence 9999999999999999999999999999999999999997 99999999999999887643 233 1233211 1
Q ss_pred CCcceEEEEEEEEEcCCCCcccc-c--eeecCCcccccCCCCCCcceEEEEEcCCccEEEEccCCCCCchhhhccCCCCe
Q 036603 519 VKEPMFIPVAIGLLNSSGKDMPL-S--SVYHNGKLQSLGSNNQPVYTTVLRVTKKEEEFVFSDISERPIPSILRGYSAPI 595 (926)
Q Consensus 519 ~~~~~~iPv~i~l~~~~g~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~l~ln~~~~~f~~~~~~~~p~~sllr~fsapv 595 (926)
...+|+|||.+. +..+..+.. . .+.+++....+..........|+++|.++.|||+++|++..|..|...++.
T Consensus 468 ~~~~~~ip~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~gyyrv~yd~~~~~~l~~~l~~-- 543 (831)
T TIGR02412 468 PPRPHRIAIGLY--DLDRDDLRRTTLVPLTISGERTAVPQLVGKRAPALVLLNDDDLTYAKVRLDPTSFDTVLAALSK-- 543 (831)
T ss_pred CCCCeeEEEeee--ecCCCcceeeeEEEEEEecCceeehhhcCCCCCCEEEEeCCCcEEEEEECCHHHHHHHHHHhhh--
Confidence 114587887753 322332221 1 233444332222110001236999999999999999999999888887752
Q ss_pred eecCCCCHHHHHhhHhcCCChhhHHHHHHHHHHHHHHHHH-HhhccCCCCCCChhHHHHHH-HHhcCCCCCHHHHHHHhC
Q 036603 596 RLESDLSDSDLFFLLANDSDEFNRWEAGQVLARKLMLSLV-ADFQQNKPLVLNPKFVHGFR-SMLGDSSLDKEFIAKAIT 673 (926)
Q Consensus 596 ~~~~~~~~~~l~~ll~~d~D~f~r~~Ag~~l~~~~~l~l~-~~~~~e~~~~v~~~~~~~l~-~~~~~~~~~~~~~a~~l~ 673 (926)
..++.+|+.|+ +|.|+.+.+|.. ..+.+++++ .++.+|+++.||..++..+. .+.. .+
T Consensus 544 ----~~~~~~R~~l~---~d~~~~~~~g~~-~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~-----------~~- 603 (831)
T TIGR02412 544 ----LPDPLSRAVVW---ASLWDSVRDGEL-SPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAA-----------QY- 603 (831)
T ss_pred ----CCChhhHHHHH---HHHHHHHHcCCC-CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH-----------Hh-
Confidence 22688999999 799999999986 788899966 67899999999998877666 4321 11
Q ss_pred CCCHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHhHHHHHHHHHHHHHHHhccCChhHH
Q 036603 674 LPGEGEIMDMMEVADPDAVHAVRTFIRKQLASELKAEFLTTVENNRSTGEYVFNHHNMARRALKNIALAYLASLEDADIV 753 (926)
Q Consensus 674 lp~~~~l~~~~~~~dp~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~n~~l~~l~~~~~~~~~ 753 (926)
. ++ ..|..++..++..+.. +... ..+. .+.-.|.++. ++|..+++++.
T Consensus 604 ~-------------~~----~~~~~~~~~~~~~~~~----~~~~---~~~~----~~~~~~~~~~----~~~~~~~~~~~ 651 (831)
T TIGR02412 604 A-------------PI----ADRPALLAVAALACRS----LRRA---MESG----PDFQLRWLRA----LALTATDPDSL 651 (831)
T ss_pred C-------------CH----HHHHHHHHHHHHHHHH----HHhc---cCCC----ccHHHHHHHH----HHHhcCCHHHH
Confidence 1 11 1222233323222221 1111 1111 1111132332 56666777777
Q ss_pred HHHHHHHHhC-----CChhHHHHHHHHHHcCCcchHHHHHHHHHHhcCCchHHHHHHHHhhcccCCCChHH-HHHHHhcC
Q 036603 754 ELALREYKTA-----TNMTEQFAALAAIVQKPGKIRDEVLDDFYGKWQHDYLVVNKWFALQAMSDIPGNVE-CVQRLLDH 827 (926)
Q Consensus 754 ~~~~~~~~~a-----~nmtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~l~~~kw~~~~a~~~~~~~~~-~v~~l~~~ 827 (926)
+.+++.+..- -+-..|-.++.+++..+..+.+.+++.+... .++-.-..-+...|+++.++.++ +...++..
T Consensus 652 ~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~l~al~~~~~~~~~~~~~~~~~~~ 729 (831)
T TIGR02412 652 RRLLSLLDGKIKGLALDPDLRWRIIARLAALGFIDADDIAAELERD--NTASGEEHAAAARAARPDAAAKREAWQKLVTT 729 (831)
T ss_pred HHHHHHHhCCCCCcccCHhHHHHHHHHHHhcCCCCHHHHHHHHhcC--CCHHHHHHHHHHhccCCCHHHHHHHHHHHhCC
Confidence 7777776551 1223455788888877666677644433332 34444555777777777777666 46666544
Q ss_pred CCCCCCCCcchhhhhhhcc
Q 036603 828 PAFDLRNPNKVYSLIGGFC 846 (926)
Q Consensus 828 ~~f~~~~pn~~r~l~~~f~ 846 (926)
+. ..+..+++++++|+
T Consensus 730 ~~---~~~~~~~~~~~~~~ 745 (831)
T TIGR02412 730 DA---LPNSKQRAIIEGFW 745 (831)
T ss_pred CC---CCHHHHHHHHhhcC
Confidence 32 35578888999884
No 7
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=2.5e-65 Score=607.74 Aligned_cols=394 Identities=23% Similarity=0.371 Sum_probs=314.8
Q ss_pred CcceEEEEEEEEECCCeEEEEEEEEEEEeccC-CCCcEEEEcCCcEEEEEEEcCeEecccceE------ecCCEEEEECC
Q 036603 67 NYYFDTVDLKFSLGEEKTIVSSKITVFPRVEG-SSSPLVLDGQDLKLVSIKVNGIELKEGDYH------LDSRHLTLQSP 139 (926)
Q Consensus 67 ~~~~~~~~L~~~l~~~~~~v~g~i~i~~~~~~-~~~~l~L~~~~L~I~~v~i~G~~l~~~~y~------~~~~~L~I~l~ 139 (926)
.+.+.||+|+++++.+..+++|+++|++.... ..+.|+||+.+|+|++|.++|++++ |+ ..++.|+|.++
T Consensus 10 ~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~---~~~~~~~~~~g~~L~I~l~ 86 (601)
T TIGR02411 10 DFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGLPAD---FAIGERKEPLGSPLTISLP 86 (601)
T ss_pred CcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCcccc---eEeccccCCCCCeEEEEeC
Confidence 46677889999888888888888888887643 3578999999999999999998653 44 34678999873
Q ss_pred ----CCCeEEEEEEEEEeeccCCCCCceEee-----C----CeEEeccccCCcceeeccCCCCCCceeEEEEEEEcCCCc
Q 036603 140 ----PNGAFTLEIVTEIYPQKNTSLEGIYKS-----S----GNFCTQCEAEGFRKITFYQDRPDIMAKYKCYIEADKSLY 206 (926)
Q Consensus 140 ----~~~~~~L~I~~~~~p~~~~~~~Gly~s-----~----~~~~Tq~ep~~aR~~fPc~DeP~~katf~l~I~~p~~~~ 206 (926)
+|+.++|+|.|++.|. ..|++.. . .+++|||||.+||+||||+|+|++|++|+++|++| +
T Consensus 87 ~~l~~g~~~~l~I~Y~~~~~----~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P--~- 159 (601)
T TIGR02411 87 IATSKNKELVLNISFSTTPK----CTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESP--L- 159 (601)
T ss_pred CccCCCceEEEEEEEeecCC----CceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEEEeeC--c-
Confidence 4678999999998653 2466431 1 36899999999999999999999999999999999 5
Q ss_pred eEEecCCccccceeccCCeEEEEEeCCcccccceeeeEeccceeEEeeeeecCCceEEEEEEccCCChhhHHHHHH-HHH
Q 036603 207 PVLLSNGNLIERGNLEGGRHYALWEDPFKKPCYLFALVAGQLESRDDIFVTRSGRKVSLRIWTPAQDLPKTAHAMY-SLK 285 (926)
Q Consensus 207 ~v~lSNG~l~~~~~~~~g~~~~~f~~~~p~ptyl~a~~vG~f~~~~~~~~t~~g~~v~l~vy~~~~~~~~~~~al~-~~~ 285 (926)
++++||.++.... ++..+++|+.++|||+||+||+||+|+..+ .| ..+++|++|+..+++++++. .+.
T Consensus 160 -~av~sg~~~~~~~--~~~~~~~F~~t~pmptYLia~avG~~~~~~------~g--~~~~v~~~p~~~~~~~~~~~~~~~ 228 (601)
T TIGR02411 160 -PVLMSGIPDGETS--NDPGKYLFKQKVPIPAYLIALASGDLASAP------IG--PRSSVYSEPEQLEKCQYEFEHDTE 228 (601)
T ss_pred -ceeccCCcccccc--CCCceEEEEeCCCcchhhheeeeccceecc------cC--CceEEEccchhHHHHHHHHHHhHH
Confidence 6777776655432 345578999999999999999999998643 13 35799999999889999998 899
Q ss_pred HHHHHHHHHhCCCCCCCcccEEEe-cCCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCCcccc
Q 036603 286 AAMKWDEDVFGLEYDLDLFNIVAV-PDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGNRVTC 364 (926)
Q Consensus 286 ~~l~~~e~~fG~~YP~~k~~iV~v-p~f~~gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn~Vt~ 364 (926)
++|+++|+++| |||++|||+|++ |+|++|||||||+ +|.+..++... +. ...+||||+|||||||+||+
T Consensus 229 ~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~l-tf~~~~ll~~d-------~s-~~~viaHElAHqWfGNlVT~ 298 (601)
T TIGR02411 229 NFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPNL-TFATPTLIAGD-------RS-NVDVIAHELAHSWSGNLVTN 298 (601)
T ss_pred HHHHHHHHhCC-CCcCccceEEEecCcccccccccccc-eeeccccccCC-------hh-hhhhHHHHHHhhccCceeec
Confidence 99999999876 999999999976 7899999999995 56666565432 11 34799999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHH------HHH-HhhhccCCCCCCCC------------CCCCCccccch
Q 036603 365 RDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIA------DVS-KLRNYQFPQDAGPM------------AHPVRPHSYIK 425 (926)
Q Consensus 365 ~~w~dlWL~EGfAty~~~~~~~~~~~~~~~r~~------~~~-~l~~~~~~~D~~~~------------~~pi~~~~Y~K 425 (926)
+||+|+|||||||+|++.++.+.+.+.....+. .+. .++. +..+. +. ..-++.++|.|
T Consensus 299 ~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~--~~~~~-~~~~~~~~~~~~dp~~~f~~i~Y~K 375 (601)
T TIGR02411 299 CSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESVKT--LGEDP-EYTKLVVDLKDNDPDDAFSSVPYEK 375 (601)
T ss_pred CCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHHHh--hcCCC-CCCcccccCCCCChhhhccccchhh
Confidence 999999999999999999888877655422111 111 1111 11111 11 11245689999
Q ss_pred HHHHHHHHHHhhC-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc-----CcChHHH--HHHHhcCCcceEEEEE
Q 036603 426 GAEVVRMYKTLLG-SQGFRKGMDLYFKRHDGQAVTCEDFFAAMRDAN-----DAEFANF--LLWYSQAGTPRLKVTS 494 (926)
Q Consensus 426 Ga~vl~ML~~~lG-~e~F~~~lr~Yl~~~~~~~~t~~Df~~~le~~s-----g~dL~~f--~~W~~q~G~P~l~V~~ 494 (926)
|+++|+||+..|| ++.|+++||.|+++|++++++++||+++|++.. +.+++.+ ..|++++|+|.++++.
T Consensus 376 Ga~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~ 452 (601)
T TIGR02411 376 GFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNF 452 (601)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCC
Confidence 9999999999999 999999999999999999999999999998763 3566654 4999999999987653
No 8
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=3.1e-59 Score=535.96 Aligned_cols=344 Identities=28% Similarity=0.409 Sum_probs=281.4
Q ss_pred CcceEEEEEEEEECCCeEEEEEEEEEEEeccCCCCcEEEEcCCcEEEEEEEcCeEecc------cceEecCCEEEEEC--
Q 036603 67 NYYFDTVDLKFSLGEEKTIVSSKITVFPRVEGSSSPLVLDGQDLKLVSIKVNGIELKE------GDYHLDSRHLTLQS-- 138 (926)
Q Consensus 67 ~~~~~~~~L~~~l~~~~~~v~g~i~i~~~~~~~~~~l~L~~~~L~I~~v~i~G~~l~~------~~y~~~~~~L~I~l-- 138 (926)
.+...||+|+++++.+..+++|+++|+++...+++.|+||+.+++|.+|.++|..... ..+..+.+.|+|.+
T Consensus 5 ~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~~~~~~~~~~~~~~~~l~I~l~~ 84 (390)
T PF01433_consen 5 DVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSSEYKSSPFEYDDENEKLTITLPK 84 (390)
T ss_dssp TEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSCTECCEEEEEECCBTEEEEEEEE
T ss_pred CeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccccccccceeeccccceeehhhhh
Confidence 4455678888888777778888888888876678999999999999999999876642 23444456788876
Q ss_pred --CCCCeEEEEEEEEEeeccCCCCCceEee----------CCeEEeccccCCcceeeccCCCCCCceeEEEEEEEcCCCc
Q 036603 139 --PPNGAFTLEIVTEIYPQKNTSLEGIYKS----------SGNFCTQCEAEGFRKITFYQDRPDIMAKYKCYIEADKSLY 206 (926)
Q Consensus 139 --~~~~~~~L~I~~~~~p~~~~~~~Gly~s----------~~~~~Tq~ep~~aR~~fPc~DeP~~katf~l~I~~p~~~~ 206 (926)
.+|..++|+|.|++.+. ....|+|++ .++++|||||.+||+||||+|+|++||+|+++|++|+++
T Consensus 85 ~l~~g~~~~L~I~y~g~~~--~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~~- 161 (390)
T PF01433_consen 85 PLPPGSNYTLRIEYSGKIS--DDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHPKDY- 161 (390)
T ss_dssp ECSTTEEEEEEEEEEEECB--SSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEETTT-
T ss_pred hcccCcEEEEEEEEeeccc--ccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeeccccc-
Confidence 56767999999998644 347899852 247899999999999999999999999999999999998
Q ss_pred eEEecCCccccceeccCCeEEEEEeCCcccccceeeeEeccceeEEeeeeecCCceEEEEEEccCCChhhHHHHHHHHHH
Q 036603 207 PVLLSNGNLIERGNLEGGRHYALWEDPFKKPCYLFALVAGQLESRDDIFVTRSGRKVSLRIWTPAQDLPKTAHAMYSLKA 286 (926)
Q Consensus 207 ~v~lSNG~l~~~~~~~~g~~~~~f~~~~p~ptyl~a~~vG~f~~~~~~~~t~~g~~v~l~vy~~~~~~~~~~~al~~~~~ 286 (926)
+++|||++++....++|+++++|+.++|||+|++||++|+|..++.. + +.++++++|++|+..+..+++++.+++
T Consensus 162 -~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~~~~~~~~ 236 (390)
T PF01433_consen 162 -TALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVT--T--KSGVPVRVYARPGDEEQLQFALDIAPK 236 (390)
T ss_dssp -EEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEE--T--TTEEEEEEEEECTCGGGHHHHHHHHHH
T ss_pred -eeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccc--c--ccccchheeehhhhHHHHHHHHHhhHH
Confidence 99999999999888889999999999999999999999999998642 2 226899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcccEEEecCCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCCcccccC
Q 036603 287 AMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGNRVTCRD 366 (926)
Q Consensus 287 ~l~~~e~~fG~~YP~~k~~iV~vp~f~~gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn~Vt~~~ 366 (926)
+|+||+++||.|||++|+++|++|+|..|||||||+++|++..++.+++..+..++..+..+||||+|||||||+|||+|
T Consensus 237 ~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~ 316 (390)
T PF01433_consen 237 ALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKW 316 (390)
T ss_dssp HHHHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESS
T ss_pred HHHHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCcccc
Confidence 99999999999999999999999999999999999999999999999888888888899999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHhhhccCCCCCCCCCCCCC
Q 036603 367 WFQLSLKEGLTVFRDQEFSSDMGSRT-VKRIADVSKLRNYQFPQDAGPMAHPVR 419 (926)
Q Consensus 367 w~dlWL~EGfAty~~~~~~~~~~~~~-~~r~~~~~~l~~~~~~~D~~~~~~pi~ 419 (926)
|+|+||+||||+|++.++.++..+.. ........ ....++..|..+.++|+.
T Consensus 317 w~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~pl~ 369 (390)
T PF01433_consen 317 WSDLWLNEGFATYLEYLILEKLFGEWQMMELFLVQ-EMQRALREDALPNSHPLS 369 (390)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHH-HHHHHHHHHTSTTCCCSS
T ss_pred chhhhHHHHHHHHHHHHhHhhccCcccchhhhhhh-hHHHHHHHhhcCCCcceE
Confidence 99999999999999999999887732 21111111 123345556666666654
No 9
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-51 Score=451.18 Aligned_cols=407 Identities=24% Similarity=0.369 Sum_probs=309.5
Q ss_pred cCCCCCCCcceEEEEEEEEECCCeEEEEEEEEEEEeccCCCCcEEEEcCCcEEEEEEEcCeEecc---cceEecCCE--E
Q 036603 60 LKDYKMPNYYFDTVDLKFSLGEEKTIVSSKITVFPRVEGSSSPLVLDGQDLKLVSIKVNGIELKE---GDYHLDSRH--L 134 (926)
Q Consensus 60 ~~~y~~p~~~~~~~~L~~~l~~~~~~v~g~i~i~~~~~~~~~~l~L~~~~L~I~~v~i~G~~l~~---~~y~~~~~~--L 134 (926)
.++|. ++.+.|++|++.++-+...+.|++.+++........|+||.+.+.|.+|++||.+.+. ......+.. +
T Consensus 10 ~sn~~--~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~~~~i~~~~~~~g~~~~~ 87 (613)
T KOG1047|consen 10 ASNYR--DVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEPPFRIGFRQPFLGSGQKL 87 (613)
T ss_pred ccChh--hhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCCCCccCcccCCCCCceEE
Confidence 45555 3445677777776666666666666665554334459999999999999999875431 012223333 4
Q ss_pred EEEC---CCCCeEEEEEEEEEeeccCCCCCceEe---------eCCeEEeccccCCcceeeccCCCCCCceeEEEEEEEc
Q 036603 135 TLQS---PPNGAFTLEIVTEIYPQKNTSLEGIYK---------SSGNFCTQCEAEGFRKITFYQDRPDIMAKYKCYIEAD 202 (926)
Q Consensus 135 ~I~l---~~~~~~~L~I~~~~~p~~~~~~~Gly~---------s~~~~~Tq~ep~~aR~~fPc~DeP~~katf~l~I~~p 202 (926)
.++. +.++.++|.|.|+..|. -.||-. -..++++||++..||.+|||+|.|++|.||+..|.+|
T Consensus 88 ~l~~~~~~a~~~~~l~i~y~Ts~~----atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp 163 (613)
T KOG1047|consen 88 VLPAPSSKAGERLQLLIWYETSPS----ATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVP 163 (613)
T ss_pred EeccccccccCceEEEEEEeccCC----cceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcC
Confidence 5544 35678999999985432 123321 1248899999999999999999999999999999999
Q ss_pred CCCceEEecCCccccceeccCCeEEEEEeCCcccccceeeeEeccceeEEeeeeecCCceEEEEEEccCCChhhHHHHHH
Q 036603 203 KSLYPVLLSNGNLIERGNLEGGRHYALWEDPFKKPCYLFALVAGQLESRDDIFVTRSGRKVSLRIWTPAQDLPKTAHAMY 282 (926)
Q Consensus 203 ~~~~~v~lSNG~l~~~~~~~~g~~~~~f~~~~p~ptyl~a~~vG~f~~~~~~~~t~~g~~v~l~vy~~~~~~~~~~~al~ 282 (926)
.++ .+++++....+...++|+..++|++..|+|+|++||++|++...+. | -.-+||++|...+.+++-+.
T Consensus 164 ~~l--~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eI------g--pRs~VwaEp~~~~a~~~ef~ 233 (613)
T KOG1047|consen 164 MGL--TALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESREI------G--PRSRVWAEPCLLDACQEEFA 233 (613)
T ss_pred Ccc--eeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhcccccccc------C--CccceecchhhhHHHHHHHH
Confidence 998 7777776655555567889999999999999999999999987552 1 23589999999999998888
Q ss_pred -HHHHHHHHHHHHhCCCCCCCcccEEEec-CCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCC
Q 036603 283 -SLKAAMKWDEDVFGLEYDLDLFNIVAVP-DFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGN 360 (926)
Q Consensus 283 -~~~~~l~~~e~~fG~~YP~~k~~iV~vp-~f~~gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn 360 (926)
.+.+.|+--|+.+| ||+|..||+|.+| +|++||||||.|+..... ++.... ....+|||||||-||||
T Consensus 234 ~~~e~~L~~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr--------sl~~vIaHEIAHSWtGN 303 (613)
T KOG1047|consen 234 GETEDFLKAAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR--------SLVDVIAHEIAHSWTGN 303 (613)
T ss_pred hhhHHHHHHHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc--------chhhHHHHHhhhhhccc
Confidence 89999999999999 9999999998875 799999999987655444 443322 24579999999999999
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHH---Hhhh--ccCCCCC---------CC--CCCCCCccccc
Q 036603 361 RVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIADVS---KLRN--YQFPQDA---------GP--MAHPVRPHSYI 424 (926)
Q Consensus 361 ~Vt~~~w~dlWL~EGfAty~~~~~~~~~~~~~~~r~~~~~---~l~~--~~~~~D~---------~~--~~~pi~~~~Y~ 424 (926)
+||..+|.+.|||||||+|++..+...+.+.+...+.... .++. ..+.++. ++ ..+.++.+.|.
T Consensus 304 lVTN~sWehfWLNEGfTvylErrI~g~~~g~~~~~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~VpYe 383 (613)
T KOG1047|consen 304 LVTNASWEHFWLNEGFTVYLERRIVGRLYGEAYRQFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDAFSQVPYE 383 (613)
T ss_pred ccccCccchhhhcccchhhhhhhhhhhhcchhHHHHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHhhhcCchh
Confidence 9999999999999999999999998888877654433221 1111 1122211 11 01124567899
Q ss_pred hHHHHHHHHHHhhC-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCc----Ch-HH--HHHHHhcCCcceEEE
Q 036603 425 KGAEVVRMYKTLLG-SQGFRKGMDLYFKRHDGQAVTCEDFFAAMRDANDA----EF-AN--FLLWYSQAGTPRLKV 492 (926)
Q Consensus 425 KGa~vl~ML~~~lG-~e~F~~~lr~Yl~~~~~~~~t~~Df~~~le~~sg~----dL-~~--f~~W~~q~G~P~l~V 492 (926)
||..+|+.|++.+| ++.|...||.|+++++++++.++||.+.+-+.... |+ .. |..|++.+|.|...-
T Consensus 384 KG~~ll~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p 459 (613)
T KOG1047|consen 384 KGFALLFYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKP 459 (613)
T ss_pred hhhHHHHHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCC
Confidence 99999999999998 77899999999999999999999999999876532 32 33 459999999997653
No 10
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=1.6e-32 Score=322.94 Aligned_cols=517 Identities=19% Similarity=0.235 Sum_probs=339.2
Q ss_pred ceEEEEEE-EEECCCeEEEEEEEEEEEeccCCCCcEEEEcCCcEEEEEEEcCeEecc-----------------------
Q 036603 69 YFDTVDLK-FSLGEEKTIVSSKITVFPRVEGSSSPLVLDGQDLKLVSIKVNGIELKE----------------------- 124 (926)
Q Consensus 69 ~~~~~~L~-~~l~~~~~~v~g~i~i~~~~~~~~~~l~L~~~~L~I~~v~i~G~~l~~----------------------- 124 (926)
.+..+.|+ +|+.....+|..+++|.+... +...|.||++++.|.+|.|||.+-+.
T Consensus 28 ~hQkv~l~~Idf~~rsi~G~tEitI~P~~~-nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s 106 (1180)
T KOG1932|consen 28 LHQKVSLSNIDFSKRSIIGFTEITIQPLVP-NLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPAS 106 (1180)
T ss_pred eEEEEEeecccceeeEEEeEEEEEEecCCC-CcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhh
Confidence 34456666 666666666666666665444 68899999999999999999852210
Q ss_pred ------cceE---ecCCEEEEECCC--------CCeEEEEEEEEEeeccCCCCCceEe--e-------CCeEEeccc--c
Q 036603 125 ------GDYH---LDSRHLTLQSPP--------NGAFTLEIVTEIYPQKNTSLEGIYK--S-------SGNFCTQCE--A 176 (926)
Q Consensus 125 ------~~y~---~~~~~L~I~l~~--------~~~~~L~I~~~~~p~~~~~~~Gly~--s-------~~~~~Tq~e--p 176 (926)
..|+ .+.+.|.|..|+ ....+++|.|+.. ....|+-. - .+.+.|-+. +
T Consensus 107 ~~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~----~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~ 182 (1180)
T KOG1932|consen 107 QSHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVR----EPKDGIKFVRPNYIVSPRDKHVFTNNTQIS 182 (1180)
T ss_pred hhhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEcc----CCCCCeEEeccCcccCcccCceEeecCccc
Confidence 0011 123567777643 2357778998862 12234322 1 122333333 3
Q ss_pred CCcceeeccCCCCCCceeEEEEEEEcCCCceEEecCCccccceeccC-CeEEEEEeCCcccccceeeeEeccceeEEeee
Q 036603 177 EGFRKITFYQDRPDIMAKYKCYIEADKSLYPVLLSNGNLIERGNLEG-GRHYALWEDPFKKPCYLFALVAGQLESRDDIF 255 (926)
Q Consensus 177 ~~aR~~fPc~DeP~~katf~l~I~~p~~~~~v~lSNG~l~~~~~~~~-g~~~~~f~~~~p~ptyl~a~~vG~f~~~~~~~ 255 (926)
.+||.||||.|.++.+++|++.+++|+.. +++|+|.+.++...+| ++++++|+.+.|+.+..+||++|+|+.+.+
T Consensus 183 s~ar~WfPCvD~~~e~~tWeLeftvp~~~--~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~-- 258 (1180)
T KOG1932|consen 183 SSARSWFPCVDSSYERCTWELEFTVPKNL--VAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVE-- 258 (1180)
T ss_pred cccceEEeecCCccccceEEEEEEecccc--eeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccCC--
Confidence 45899999999999999999999999999 9999999999887765 467899999999998899999999998843
Q ss_pred eecCCceEEEEEEccCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCcccEEEecCCCCccccccccccccccccccCCC
Q 036603 256 VTRSGRKVSLRIWTPAQDLPKTAHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPE 335 (926)
Q Consensus 256 ~t~~g~~v~l~vy~~~~~~~~~~~al~~~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~gaMEn~Gli~~~~~~ll~~~~ 335 (926)
+.+ +++..|+.|+..+-..+..-.+.++++|||+.+|..|||+.|.+|+||.-..--|.+.+|.+++.+. |++.+
T Consensus 259 --P~~--~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~l-Ly~~~ 333 (1180)
T KOG1932|consen 259 --PSM--IDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTSL-LYSKN 333 (1180)
T ss_pred --Ccc--CcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeeccc-cchHh
Confidence 223 6789999999999999999999999999999999889999999999998766778888898888775 44443
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhCCcccccCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHH---HHHHhhhccCCCCCC
Q 036603 336 TASDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIA---DVSKLRNYQFPQDAG 412 (926)
Q Consensus 336 ~~t~~~~~~i~~viaHElaHqWfGn~Vt~~~w~dlWL~EGfAty~~~~~~~~~~~~~~~r~~---~~~~l~~~~~~~D~~ 412 (926)
. .|..+ .....++--+|-||||..+|+.+|+|.||-+|+|.|+..+|..++.|....|+. ++..+.......-+.
T Consensus 334 i-IDq~~-~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i 411 (1180)
T KOG1932|consen 334 I-IDQTF-LTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAI 411 (1180)
T ss_pred h-hhHHH-HHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCce
Confidence 3 23222 245689999999999999999999999999999999999999987765544432 111111111100000
Q ss_pred CCCCCCCc----------------------------cccchHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 036603 413 PMAHPVRP----------------------------HSYIKGAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFF 464 (926)
Q Consensus 413 ~~~~pi~~----------------------------~~Y~KGa~vl~ML~~~lG~e~F~~~lr~Yl~~~~~~~~t~~Df~ 464 (926)
-.+.|+.+ ..-.|+..+.+|+++.+|.+-|.+.++.....
T Consensus 412 ~l~~Pi~~s~k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~------------ 479 (1180)
T KOG1932|consen 412 YLTRPISPSMKFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLEL------------ 479 (1180)
T ss_pred eeccCCCcchhhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHh------------
Confidence 00112211 01356888888899898888877665554432
Q ss_pred HHHHHhcCcChHHHH-HHHhcCCcceEEEEEEeecCCcEEEEEEEEec-------CCCC--------------CC---CC
Q 036603 465 AAMRDANDAEFANFL-LWYSQAGTPRLKVTSSYSAETRTYSLEFGQEV-------PSTP--------------GQ---PV 519 (926)
Q Consensus 465 ~~le~~sg~dL~~f~-~W~~q~G~P~l~V~~~~~~~~~~~~l~l~Q~~-------~~~~--------------~~---~~ 519 (926)
++...++.|+ .|.+..|+|.+.+...++..++.+.+.+.|.+ +.-. .| ..
T Consensus 480 -----~~~~~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v~~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g 554 (1180)
T KOG1932|consen 480 -----ASKMLLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWVRTGGHAPFSVFSDFNRKRNALEHEIKQDYTAG 554 (1180)
T ss_pred -----hhhhHHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHhhhccccceeeecccchhhhhhhhhccccccCC
Confidence 2221234554 67777777777777666666666666666611 0000 01 11
Q ss_pred CcceEEEEEEEEEcCCCCccccceeecCCcccccCCCCCCc----ceEEE-EEcCCccEEEEccCCC-CC--------ch
Q 036603 520 KEPMFIPVAIGLLNSSGKDMPLSSVYHNGKLQSLGSNNQPV----YTTVL-RVTKKEEEFVFSDISE-RP--------IP 585 (926)
Q Consensus 520 ~~~~~iPv~i~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l-~ln~~~~~f~~~~~~~-~p--------~~ 585 (926)
...|.-|++|.+..-||. +.. .+.+++..+-..+...+. ....+ ..+.++...-+.+.++ .| --
T Consensus 555 ~~~~~GpmtIrv~ElDGt-feH-~lqi~~~~~k~dI~chsK~R~~kkKk~~l~sgEE~e~dl~~~d~~spllWIRiDpd~ 632 (1180)
T KOG1932|consen 555 NEKYTGPMTIRVQELDGT-FEH-TLQIDGDFTKLDIQCHSKSRRQKKKKVPLMSGEEIEMDLTNMDEESPLLWIRIDPDM 632 (1180)
T ss_pred CceeccceEEEEEeecCc-cee-eEEecCcccccceeecccccccCCcCCCCCChhhhcccccccCccCceeEEEeCcch
Confidence 245999999999988887 432 233443321111100000 00001 2233444444444442 12 11
Q ss_pred hhhccCCCCeeecCCCCHHHHHhhHhcCCChhhHHHHHHHH
Q 036603 586 SILRGYSAPIRLESDLSDSDLFFLLANDSDEFNRWEAGQVL 626 (926)
Q Consensus 586 sllr~fsapv~~~~~~~~~~l~~ll~~d~D~f~r~~Ag~~l 626 (926)
.++|..- -..++--...++++|-|..+..+|-+.|
T Consensus 633 e~i~~i~------i~QPd~Mw~~QLr~drDVvAQ~EAI~~l 667 (1180)
T KOG1932|consen 633 EWIREIH------IEQPDFMWVYQLRQDRDVVAQMEAIESL 667 (1180)
T ss_pred hhhhhhh------ccCchHHHHHHHHhcccHHHHHHHHHHH
Confidence 2333221 2445666778888899988887776643
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.29 E-value=1.4e-10 Score=130.30 Aligned_cols=242 Identities=21% Similarity=0.350 Sum_probs=160.7
Q ss_pred cCCceEEEEEEccCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCcccEEE-ecCCCCccccccccccccccccccCCCC
Q 036603 258 RSGRKVSLRIWTPAQDLPKTAHAMYSLKAAMKWDEDVFGLEYDLDLFNIVA-VPDFNMGAMENKSLNIFNSKLVLASPET 336 (926)
Q Consensus 258 ~~g~~v~l~vy~~~~~~~~~~~al~~~~~~l~~~e~~fG~~YP~~k~~iV~-vp~f~~gaMEn~Gli~~~~~~ll~~~~~ 336 (926)
..|++..+.++..-.+. ..+...+.++++++---+.|| +-||++|.++. +.+-..||||+.- +..+.++...
T Consensus 165 ~~g~ph~~~~~g~~p~~-d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~-----St~l~~~r~~ 237 (558)
T COG3975 165 VTGAPHTIALRGELPNF-DKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRR-----STALIYDRFG 237 (558)
T ss_pred ccCCceeEEEeeccccc-cHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceecc-----cccccccccc
Confidence 34677777777765332 345556778888888889999 68899988764 5666778999873 2223333333
Q ss_pred CChHH-HHHHHHHHHHHHHHHhhCCcccccC-C----------CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHH-----
Q 036603 337 ASDAD-YAAILGVIGHEYFHNWTGNRVTCRD-W----------FQLSLKEGLTVFRDQEFSSDMGSRTVKRIADV----- 399 (926)
Q Consensus 337 ~t~~~-~~~i~~viaHElaHqWfGn~Vt~~~-w----------~dlWL~EGfAty~~~~~~~~~~~~~~~r~~~~----- 399 (926)
.++.+ ++....+++||++|-|-+-++.+.. | ..+|+.||||.|.+..+....+--....+.+.
T Consensus 238 ~~~~~ky~~~l~llsHEyfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~~~~l~~la~tl 317 (558)
T COG3975 238 FTDQDKYQDLLGLLSHEYFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISLETYLNYLAKTL 317 (558)
T ss_pred ccchhHHHHHHHHHHHHHHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 33444 5777889999999999998888775 3 35999999999998766543332222111111
Q ss_pred HHh-----hhcc-CCC---CC-----CCCCCCC--CccccchHHHHHHHHHHhh-----CHHHHHHHHHHHHHhcCC--C
Q 036603 400 SKL-----RNYQ-FPQ---DA-----GPMAHPV--RPHSYIKGAEVVRMYKTLL-----GSQGFRKGMDLYFKRHDG--Q 456 (926)
Q Consensus 400 ~~l-----~~~~-~~~---D~-----~~~~~pi--~~~~Y~KGa~vl~ML~~~l-----G~e~F~~~lr~Yl~~~~~--~ 456 (926)
..+ |..+ ..+ |+ .+..+.. ...-|.||++|--+|...| |+..++..|+..++.+.. +
T Consensus 318 ~~~~~~~gRl~~~laEsS~~awik~yr~d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~ 397 (558)
T COG3975 318 ARYLNTPGRLRQSLAESSFDAWIKYYRPDENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAER 397 (558)
T ss_pred HHHhcCCceecccccccccchhHHhhcccccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCcc
Confidence 000 1000 011 00 0000001 1234999999998888777 466788888888888765 7
Q ss_pred CCCHHHHHHHHHHhcCcChHHHH-HHHhcCCcceEEEEEEeecCCcEEEEEEEEecC
Q 036603 457 AVTCEDFFAAMRDANDAEFANFL-LWYSQAGTPRLKVTSSYSAETRTYSLEFGQEVP 512 (926)
Q Consensus 457 ~~t~~Df~~~le~~sg~dL~~f~-~W~~q~G~P~l~V~~~~~~~~~~~~l~l~Q~~~ 512 (926)
..+++|+...++.++|.|+..|+ .-+++.--|.+.--. ..+.|++++..+
T Consensus 398 ~~t~e~v~av~~~~tg~dl~~f~~~~i~~~~~~~l~~~l------~~~gL~~~~~~~ 448 (558)
T COG3975 398 GYTPEDVQAVLENVTGLDLATFFDEYIEGTEPPPLNPLL------ERFGLTFTPKPR 448 (558)
T ss_pred CCCHHHHHHHHHhhccccHHHHHHHHhhcCCCCChhhhh------hhcceEEEecCC
Confidence 79999999999999999999997 888888777765321 124577777654
No 12
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=99.25 E-value=1.2e-10 Score=130.32 Aligned_cols=303 Identities=15% Similarity=0.156 Sum_probs=194.1
Q ss_pred EEEEcCCccEEEEccCCCCCchhhhccCCCCeeecCCCCHHHHHhhHhcCCChhhHHHHHHHHHHHHHHHHHHhh-ccCC
Q 036603 564 VLRVTKKEEEFVFSDISERPIPSILRGYSAPIRLESDLSDSDLFFLLANDSDEFNRWEAGQVLARKLMLSLVADF-QQNK 642 (926)
Q Consensus 564 ~l~ln~~~~~f~~~~~~~~p~~sllr~fsapv~~~~~~~~~~l~~ll~~d~D~f~r~~Ag~~l~~~~~l~l~~~~-~~e~ 642 (926)
||.+|.++.|||+|+|++..|..|...+.+. .+++.+|+.|+ +|.|+...+|+. ....+++++.++ .+|+
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~-----~l~~~~R~~ll---~D~~al~~~g~~-~~~~~l~l~~~~~~~E~ 71 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSN-----HLSPLDRAQLL---DDLFALARAGRL-SYSDFLDLLEYLLPNET 71 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHH-----GS-HHHHHHHH---HHHHHHHHTTSS--HHHHHHHHGGG-GT--
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcC-----CCCHHHHHHHH---HHHHHHHHcCCC-CHHHHHHHHHHhccCCC
Confidence 7899999999999999999999999877542 27899999999 799999999997 788999999999 9999
Q ss_pred CCCCChhHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 036603 643 PLVLNPKFVHGFRSMLGDSSLDKEFIAKAITLPGEGEIMDMMEVADPDAVHAVRTFIRKQLASELKAEFLTTVENNRSTG 722 (926)
Q Consensus 643 ~~~v~~~~~~~l~~~~~~~~~~~~~~a~~l~lp~~~~l~~~~~~~dp~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~~~ 722 (926)
++.||..++..+..+. ..+..+ ++.... .+...+...+..+++++.
T Consensus 72 ~~~vw~~~~~~l~~l~-----------~~l~~~-------------~~~~~~-------~~~~~~~~l~~~~~~~l~--- 117 (324)
T PF11838_consen 72 DYVVWSTALSNLSSLR-----------NRLYAE-------------DEELQE-------AFRKFVRRLLEPLYERLG--- 117 (324)
T ss_dssp SHHHHHHHHHHHHHHH-----------HHHCSC--------------HHHHH-------HHHHHHHHHHHHHHHH-----
T ss_pred chHHHHHHHHHHHHHH-----------HHHHhc-------------cHHHHH-------HHHHHHHHHHHHHHHHcC---
Confidence 9999999888777662 122121 212111 122233344444555542
Q ss_pred CCCCC-HhHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHh---C-CC-----hh-HHHHHHHHHHcCCcch-HHHHHHH
Q 036603 723 EYVFN-HHNMARRALKNIALAYLASLEDADIVELALREYKT---A-TN-----MT-EQFAALAAIVQKPGKI-RDEVLDD 790 (926)
Q Consensus 723 ~~~~~-~~~~~~r~l~n~~l~~l~~~~~~~~~~~~~~~~~~---a-~n-----mt-d~~~al~~l~~~~~~~-~~~~l~~ 790 (926)
+... .++...+.||..++..+| +++++.+.+.++|++ . .+ .. -|.++++..+..+..+ .+.+++.
T Consensus 118 -~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~ 194 (324)
T PF11838_consen 118 -WDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWEL 194 (324)
T ss_dssp -SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHH
T ss_pred -CCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHH
Confidence 2222 266788899999999999 889998888887753 1 11 23 3558888777665544 5555555
Q ss_pred HHHhcCCchHHHHHHHHhhcccCCCChHHHHHHHhcCCCCCCCCCcchhhhhhhcc-CCCcccccCCCchhHHHHHHHHH
Q 036603 791 FYGKWQHDYLVVNKWFALQAMSDIPGNVECVQRLLDHPAFDLRNPNKVYSLIGGFC-GSPVNLHAKDGSGYKFLGEMVVQ 869 (926)
Q Consensus 791 f~~~~~~~~l~~~kw~~~~a~~~~~~~~~~v~~l~~~~~f~~~~pn~~r~l~~~f~-~n~~~fh~~~g~gy~~~~~~~~~ 869 (926)
|... +++..-...+...|+++.+..+.++-.+.-.+. .-.++.++.++.+|+ .||.+- ..=.+|+-+..-.
T Consensus 195 ~~~~--~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~--~v~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~n~~~ 266 (324)
T PF11838_consen 195 YKNS--TSPEEKRRLLSALACSPDPELLKRLLDLLLSND--KVRSQDIRYVLAGLASSNPVGR----DLAWEFFKENWDA 266 (324)
T ss_dssp HHTT--STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTS--TS-TTTHHHHHHHHH-CSTTCH----HHHHHHHHHCHHH
T ss_pred Hhcc--CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCc--ccccHHHHHHHHHHhcCChhhH----HHHHHHHHHHHHH
Confidence 4443 567777888888888998988888888776643 233566999999998 787644 2235555555445
Q ss_pred hhhc---ChhHHhhhhhHhhhhhccCHHHHHHHHHHHHHHHh-ccCCCccHHHHHH
Q 036603 870 LDKI---NPQVASRMVSAFSRWRRFDETRQNLAKAQLEMIMS-ANGLSENVFEIAS 921 (926)
Q Consensus 870 ~~~~---np~~a~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ls~~~~e~~~ 921 (926)
+... +...-++++..+...-. +++....+++-++.-.. .+++.+-+.+.++
T Consensus 267 i~~~~~~~~~~~~~~~~~~~~~~~-t~~~~~~~~~f~~~~~~~~~~~~r~l~q~~e 321 (324)
T PF11838_consen 267 IIKKFGTNSSALSRVIKSFAGNFS-TEEQLDELEEFFEDKPKPPPGLRRALAQSLE 321 (324)
T ss_dssp HHCHC-TTSHCCHHHHHCCCTT---SHHHHHHHHHHHHHHCTCCCTTTHHCHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHhccCC-CHHHHHHHHHHHhhCcCCChHHHHHHHHHHH
Confidence 5444 33344566665544322 55555666666654322 2444444444443
No 13
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.04 E-value=1.9e-10 Score=109.98 Aligned_cols=101 Identities=19% Similarity=0.290 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhhCCcccccCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhccCCC-----CCCCCCCC
Q 036603 343 AAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIADVSKLRNYQFPQ-----DAGPMAHP 417 (926)
Q Consensus 343 ~~i~~viaHElaHqWfGn~Vt~~~w~dlWL~EGfAty~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~-----D~~~~~~p 417 (926)
..+..+++||++|+|+++.++.......|++||+|+|++..... .....+.. .+....+.. +..+....
T Consensus 23 ~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~~~----~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~ 96 (128)
T PF13485_consen 23 DWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRIED----EFDEDLKQ--AIESGSLPPLEPLNSSFDFSWE 96 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCccc----hhHHHHHH--HHHcCCCCChHHHhcccccccc
Confidence 34568999999999999999877788899999999999843111 00111100 111111100 00011223
Q ss_pred CCccccchHHHHHHHHHHhhCHHHHHHHHHHH
Q 036603 418 VRPHSYIKGAEVVRMYKTLLGSQGFRKGMDLY 449 (926)
Q Consensus 418 i~~~~Y~KGa~vl~ML~~~lG~e~F~~~lr~Y 449 (926)
.....|.+|..++++|....|++.|++.|+.|
T Consensus 97 ~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 97 DDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34568999999999999999999999999876
No 14
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=97.26 E-value=7.2e-05 Score=70.80 Aligned_cols=45 Identities=29% Similarity=0.557 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhCCcccccC-----------CCchhHHHHHHHHHHHHHHHHhc
Q 036603 345 ILGVIGHEYFHNWTGNRVTCRD-----------WFQLSLKEGLTVFRDQEFSSDMG 389 (926)
Q Consensus 345 i~~viaHElaHqWfGn~Vt~~~-----------w~dlWL~EGfAty~~~~~~~~~~ 389 (926)
...+++||++|.|.+-++.|.. -..+|+-||||+|++..+....+
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~RaG 59 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRAG 59 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHcC
Confidence 4578999999999987776653 34589999999999887766544
No 15
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.02 E-value=0.027 Score=63.19 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHh--hCCccccc--CCCchhHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHhhhccCCCCCCCC
Q 036603 343 AAILGVIGHEYFHNW--TGNRVTCR--DWFQLSLKEGLTVFRDQEFSSDMGSR----TVKRIADVSKLRNYQFPQDAGPM 414 (926)
Q Consensus 343 ~~i~~viaHElaHqW--fGn~Vt~~--~w~dlWL~EGfAty~~~~~~~~~~~~----~~~r~~~~~~l~~~~~~~D~~~~ 414 (926)
..+..++|||+-|+= --+.|... .-.++|||||++.-+++.+....... .-.|+.+........+ +..-.
T Consensus 137 ~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~~~~~~~--~~~l~ 214 (366)
T PF10460_consen 137 DTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPYYNNYTSGNY--NCSLT 214 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHHHhhccccCC--Cccee
Confidence 457789999999974 33334433 34799999999999998887665211 0112222111000000 00000
Q ss_pred C-CCC--CccccchHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc--CcChHHHH-HHHhcC
Q 036603 415 A-HPV--RPHSYIKGAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFFAAMRDAN--DAEFANFL-LWYSQA 485 (926)
Q Consensus 415 ~-~pi--~~~~Y~KGa~vl~ML~~~lG~e~F~~~lr~Yl~~~~~~~~t~~Df~~~le~~s--g~dL~~f~-~W~~q~ 485 (926)
. .+. .-.+|....++..-|....|.+.|++.|.. ....+.++.+.+..+.. +.++..++ +|....
T Consensus 215 ~w~~~g~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~~w~~A~ 285 (366)
T PF10460_consen 215 AWSSFGDSLASYSSSYSFGAYLYRQYGGDFYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLRRWGVAL 285 (366)
T ss_pred ecCCCccccccchhHHHHHHHHHHHcChHHHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 0 000 124799988898888888899888776652 13466778777765544 46788887 998776
No 16
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=94.72 E-value=0.66 Score=48.44 Aligned_cols=168 Identities=16% Similarity=0.215 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHhCCC-CCCCcccEEE--ecCCCCcccccc------ccccccccccccCCCCCChHHHHHHHHHH
Q 036603 279 HAMYSLKAAMKWDEDVFGLE-YDLDLFNIVA--VPDFNMGAMENK------SLNIFNSKLVLASPETASDADYAAILGVI 349 (926)
Q Consensus 279 ~al~~~~~~l~~~e~~fG~~-YP~~k~~iV~--vp~f~~gaMEn~------Gli~~~~~~ll~~~~~~t~~~~~~i~~vi 349 (926)
.+...+.++..+-.+.|-.+ .+-+..+-|. +.++ +|.-+. .-|.++..++-..+.. ...+..+..+|
T Consensus 25 ~a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~--~gVA~t~gd~~~~~I~~S~~~i~~~~~~--~~~~~Ei~Gvl 100 (205)
T PF04450_consen 25 DAEQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDM--DGVAYTSGDDDHKEIHFSARYIAKYPAD--GDVRDEIIGVL 100 (205)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECC--CeeEEEecCCCccEEEEeHHHHhhcccc--cchHHHHHHHH
Confidence 34455667777777766433 2223333332 3443 222222 3455666655333221 22345688999
Q ss_pred HHHHHHHhhCCcccccCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhccCCCCCCCCCCCCCccccchHHHH
Q 036603 350 GHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIADVSKLRNYQFPQDAGPMAHPVRPHSYIKGAEV 429 (926)
Q Consensus 350 aHElaHqWfGn~Vt~~~w~dlWL~EGfAty~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~D~~~~~~pi~~~~Y~KGa~v 429 (926)
.||++|-|=.+--+.. --||-||+|.|+..... +... . -..|....--...|.-.|.+
T Consensus 101 ~HE~~H~~Q~~~~~~~---P~~liEGIADyVRl~aG--~~~~-------------~----w~~p~~~~~wd~gY~~TA~F 158 (205)
T PF04450_consen 101 YHEMVHCWQWDGRGTA---PGGLIEGIADYVRLKAG--YAPP-------------H----WKRPGGGDSWDDGYRTTARF 158 (205)
T ss_pred HHHHHHHhhcCCCCCC---ChhheecHHHHHHHHcC--CCCc-------------c----ccCCCCCCCcccccHHHHHH
Confidence 9999997755543322 34999999999743211 1000 0 00010000012568889999
Q ss_pred HHHHHH-hhCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCcChHHHH
Q 036603 430 VRMYKT-LLGSQGFRKGMDLYFKRHDGQAVTCEDFFAAMRDANDAEFANFL 479 (926)
Q Consensus 430 l~ML~~-~lG~e~F~~~lr~Yl~~~~~~~~t~~Df~~~le~~sg~dL~~f~ 479 (926)
|.-|+. ..|+ .|-+-|..=+.+..+ +.++||..+ .|+++++++
T Consensus 159 L~wle~~~~~~-gfV~~LN~~m~~~~y---~~~~~~~~l---~G~~v~~LW 202 (205)
T PF04450_consen 159 LDWLEDNRYGK-GFVRRLNEAMRRDKY---SSDDFWKEL---LGKPVDELW 202 (205)
T ss_pred HHHHHhcccCc-cHHHHHHHHHhhCCC---CcHhHHHHH---HCcCHHHHH
Confidence 999998 5554 566666666656555 456666544 588887764
No 17
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=92.84 E-value=0.071 Score=51.19 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhCCc-ccccC-CCchhHHHHHHHHHHH
Q 036603 347 GVIGHEYFHNWTGNR-VTCRD-WFQLSLKEGLTVFRDQ 382 (926)
Q Consensus 347 ~viaHElaHqWfGn~-Vt~~~-w~dlWL~EGfAty~~~ 382 (926)
.+|+||-+||=..|. |-++. -.-.|+.||||+|++.
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~ 40 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFET 40 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCC
Confidence 479999999987765 32221 1237999999999863
No 18
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=92.64 E-value=1.3 Score=49.36 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcCCC-CC--CCCHhHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 036603 688 DPDAVHAVRTFIRKQLA--SELKAEFLTTVENNRSTG-EY--VFNHHNMARRALKNIALAYLASLEDADIVELALREYKT 762 (926)
Q Consensus 688 dp~~~~~~~~~~~~~la--~~l~~~~~~~~~~~~~~~-~~--~~~~~~~~~r~l~n~~l~~l~~~~~~~~~~~~~~~~~~ 762 (926)
+.......|..+....+ ....++....+.+..... +. ..++ .||..++...+..|+++.++.+.+.|+.
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~------dlr~~v~~~~~~~g~~~~~~~l~~~~~~ 197 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPP------DLRWAVYCAGVRNGDEEEWDFLWELYKN 197 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-H------HHHHHHHHHHTTS--HHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccch------HHHHHHHHHHHHHhhHhhHHHHHHHHhc
Confidence 44444566666555544 233344555555433221 11 2222 3888899999998888889999999999
Q ss_pred CCChhHHHHHHHHHHcCCcch-HHHHHHHHHH
Q 036603 763 ATNMTEQFAALAAIVQKPGKI-RDEVLDDFYG 793 (926)
Q Consensus 763 a~nmtd~~~al~~l~~~~~~~-~~~~l~~f~~ 793 (926)
+++..+|..+|.+|+|+..++ .+.+|+....
T Consensus 198 ~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 198 STSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 999999999999999988776 5566666665
No 19
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=91.48 E-value=0.74 Score=47.79 Aligned_cols=97 Identities=16% Similarity=0.229 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCcccEEEecCCCCc--ccc---cccccccccccccc-CCCCCChHHHHHHHHHHHHHHHHH
Q 036603 283 SLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMG--AME---NKSLNIFNSKLVLA-SPETASDADYAAILGVIGHEYFHN 356 (926)
Q Consensus 283 ~~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~g--aME---n~Gli~~~~~~ll~-~~~~~t~~~~~~i~~viaHElaHq 356 (926)
.+.+++.-..+.|. -+.++|..+|.-+.+ -++ ..|-..+....++. -+. ......+..+||||+-|.
T Consensus 4 ~i~~~~~~~~~~~~----~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~---~~~~~~l~~~iaHE~hH~ 76 (195)
T PF10026_consen 4 IIEEALEKSIELLP----GPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPN---DYSLEELPALIAHEYHHN 76 (195)
T ss_pred HHHHHHHHHHHHcC----CCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCC---cccHHHHHHHHHHHHHHH
Confidence 45566666666664 335555544421111 122 22333333333332 222 222346889999999999
Q ss_pred hhCCccccc----CCCchhHHHHHHHHHHHHHHH
Q 036603 357 WTGNRVTCR----DWFQLSLKEGLTVFRDQEFSS 386 (926)
Q Consensus 357 WfGn~Vt~~----~w~dlWL~EGfAty~~~~~~~ 386 (926)
+--..+..+ .--+.-+.||+|.++...+..
T Consensus 77 ~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g 110 (195)
T PF10026_consen 77 CRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYG 110 (195)
T ss_pred HHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcC
Confidence 643333211 122467899999998765543
No 20
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=87.92 E-value=1.2 Score=46.38 Aligned_cols=69 Identities=28% Similarity=0.251 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcccEEEecCCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCC
Q 036603 281 MYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGN 360 (926)
Q Consensus 281 l~~~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn 360 (926)
.+.+...++.+++.+|.++ +++.+=-.-. ..|.....|.|+||-..+.+++. -++.||+||++|-...|
T Consensus 111 ~~~l~~~~~~~~~~~~~~~--~~i~ir~~ks-rWGsc~~~~~I~ln~~L~~~P~~--------~idYVvvHEL~Hl~~~n 179 (205)
T PF01863_consen 111 KEYLPERLKKYAKKLGLPP--PKIKIRDMKS-RWGSCSSKGNITLNWRLVMAPPE--------VIDYVVVHELCHLRHPN 179 (205)
T ss_pred HHHHHHHHHHHHHHcCCCc--ceEEEeehhh-ccccCCCCCcEEeecccccCCcc--------HHHHHHHHHHHHhccCC
Confidence 3456677788899998743 4544433333 36766778899999988876653 37899999999988655
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=87.76 E-value=44 Score=43.12 Aligned_cols=264 Identities=22% Similarity=0.192 Sum_probs=137.4
Q ss_pred CHHHHHhhHhcCCChhhHHHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHhcCCCCCHHHHH------HHhCCC
Q 036603 602 SDSDLFFLLANDSDEFNRWEAGQVLARKLMLSLVADFQQNKPLVLNPKFVHGFRSMLGDSSLDKEFIA------KAITLP 675 (926)
Q Consensus 602 ~~~~l~~ll~~d~D~f~r~~Ag~~l~~~~~l~l~~~~~~e~~~~v~~~~~~~l~~~~~~~~~~~~~~a------~~l~lp 675 (926)
+.+.+...+ +|+|+.-|..|.+.|..-. .+..+..|...|.|++.+-...| ..-.+|
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~~----------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~ 684 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTETT----------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP 684 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhhc----------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC
Confidence 456677777 6889999988887753210 12233334444433322211100 011234
Q ss_pred CHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHhHHHHHHHHHHHHHHHhccCChhHHHH
Q 036603 676 GEGEIMDMMEVADPDAVHAVRTFIRKQLASELKAEFLTTVENNRSTGEYVFNHHNMARRALKNIALAYLASLEDADIVEL 755 (926)
Q Consensus 676 ~~~~l~~~~~~~dp~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~n~~l~~l~~~~~~~~~~~ 755 (926)
....|...+..-|| .+|......|+..-......+...+.+ .++ . +|..++.-|...++++..
T Consensus 685 ~~~~L~~~L~~~d~----~VR~~A~~aL~~~~~~~~~~l~~~L~D-----~d~-~-----VR~~Av~aL~~~~~~~~l-- 747 (897)
T PRK13800 685 PAPALRDHLGSPDP----VVRAAALDVLRALRAGDAALFAAALGD-----PDH-R-----VRIEAVRALVSVDDVESV-- 747 (897)
T ss_pred chHHHHHHhcCCCH----HHHHHHHHHHHhhccCCHHHHHHHhcC-----CCH-H-----HHHHHHHHHhcccCcHHH--
Confidence 55555555555666 556555555553211111122222221 111 1 222233333333443332
Q ss_pred HHHHHHhCCChhHHHHHHHHHHcCCcchH--HHHHHHHHHhcCCchHHHHHHHHhhcccCCCC-hHHHHHHHhcCCCCCC
Q 036603 756 ALREYKTATNMTEQFAALAAIVQKPGKIR--DEVLDDFYGKWQHDYLVVNKWFALQAMSDIPG-NVECVQRLLDHPAFDL 832 (926)
Q Consensus 756 ~~~~~~~a~nmtd~~~al~~l~~~~~~~~--~~~l~~f~~~~~~~~l~~~kw~~~~a~~~~~~-~~~~v~~l~~~~~f~~ 832 (926)
...-...+..-|.+|..+|......+. -.+|...... .|+.|-..=...-+....+. ....+...+.+++
T Consensus 748 --~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D--~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d--- 820 (897)
T PRK13800 748 --AGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGD--PDPLVRAAALAALAELGCPPDDVAAATAALRASA--- 820 (897)
T ss_pred --HHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcC--CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCC---
Confidence 123455677888888888888654432 2455555543 56666555444444444443 3366777777775
Q ss_pred CCCcchhh-hhhhccCCCcccccCCCchhHHHHHHHHHhhhcChhHHhhhhhHhhhhhccCHHHHHHHHHHHHHHHhccC
Q 036603 833 RNPNKVYS-LIGGFCGSPVNLHAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFSRWRRFDETRQNLAKAQLEMIMSANG 911 (926)
Q Consensus 833 ~~pn~~r~-l~~~f~~n~~~fh~~~g~gy~~~~~~~~~~~~~np~~a~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 911 (926)
| .||. .+.+... + .+-.....|. ..|+.-|++|--.-+.+|.+| ..++.. +..|.+.++.+
T Consensus 821 --~-~VR~~Aa~aL~~----l--~~~~a~~~L~---~~L~D~~~~VR~~A~~aL~~~-~~~~~a----~~~L~~al~D~- 882 (897)
T PRK13800 821 --W-QVRQGAARALAG----A--AADVAVPALV---EALTDPHLDVRKAAVLALTRW-PGDPAA----RDALTTALTDS- 882 (897)
T ss_pred --h-HHHHHHHHHHHh----c--cccchHHHHH---HHhcCCCHHHHHHHHHHHhcc-CCCHHH----HHHHHHHHhCC-
Confidence 2 4554 4444421 1 1122334444 445667899988889999998 344444 44555544433
Q ss_pred CCccHHHHHHhhhc
Q 036603 912 LSENVFEIASKSLA 925 (926)
Q Consensus 912 ls~~~~e~~~~~l~ 925 (926)
+.+|+..+.++|.
T Consensus 883 -d~~Vr~~A~~aL~ 895 (897)
T PRK13800 883 -DADVRAYARRALA 895 (897)
T ss_pred -CHHHHHHHHHHHh
Confidence 7889999999985
No 22
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=86.63 E-value=23 Score=45.49 Aligned_cols=181 Identities=15% Similarity=0.182 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCHhHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHhCCC----hh-HHH-HHHHHH
Q 036603 703 LASELKAEFLTTVENNRSTGEYVFNHHNMARRALKNIALAYLASLEDADIVELALREYKTATN----MT-EQF-AALAAI 776 (926)
Q Consensus 703 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~n~~l~~l~~~~~~~~~~~~~~~~~~a~n----mt-d~~-~al~~l 776 (926)
+-..++..+..++.+.. +.....+-..+.||..++.+.|..+.+++...|...|++-.. ++ |.+ +.+...
T Consensus 644 ~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~~~~ip~~lr~~vy~~~ 719 (882)
T KOG1046|consen 644 FKEFVKKLILPIFEKLG----WSDGADSSLDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAGTNPIPPDLREVVYCTA 719 (882)
T ss_pred HHHHHHHHHHHHHHHhc----CCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCCCChhhhhhhhhHH
Confidence 44444555556666543 222222227788999999999999999999999998876322 33 544 555533
Q ss_pred H-cCCcchHHHHHHHHHHhcCCchHHHHHHHHhhcccCCCChHHHHHHHhcCCCCCCCCCcchhhhhhhccCCCcccccC
Q 036603 777 V-QKPGKIRDEVLDDFYGKWQHDYLVVNKWFALQAMSDIPGNVECVQRLLDHPAFDLRNPNKVYSLIGGFCGSPVNLHAK 855 (926)
Q Consensus 777 ~-~~~~~~~~~~l~~f~~~~~~~~l~~~kw~~~~a~~~~~~~~~~v~~l~~~~~f~~~~pn~~r~l~~~f~~n~~~fh~~ 855 (926)
+ ..+...++.++..+-.. ...-..++-+..-++++.+.++.++-.+..+ .+.... +.+..++.+.++|+.+.
T Consensus 720 ~~~g~~~~w~~~~~~y~~~--~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~-~~~v~~-qd~~~~~~~~~~~~~g~--- 792 (882)
T KOG1046|consen 720 VQFGTEEDWEQLLELYKKE--TTAAEKRKLLNALSCSKDPWLLQRLLDLAFD-AENVRD-QDVLTLLQGISGNPRGV--- 792 (882)
T ss_pred HHhcCHhHHHHHHHHHhcc--ccHHHHHHHHHHhccCccHHHHHHHHHHhcc-cccccc-hhHHHHHHHHhcCcccH---
Confidence 3 34344466666666655 5556777777777788888888888877777 655555 45555556666777633
Q ss_pred CCchhHHHHHHHHHhhhcCh------hHHhhhhhHhhhhhccCHHH
Q 036603 856 DGSGYKFLGEMVVQLDKINP------QVASRMVSAFSRWRRFDETR 895 (926)
Q Consensus 856 ~g~gy~~~~~~~~~~~~~np------~~a~r~~~~~~~~~~~~~~~ 895 (926)
..--+|+-|-..+|.+..+ .+-+.....|..+.++++-+
T Consensus 793 -~~a~~~~~~n~~~l~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~ 837 (882)
T KOG1046|consen 793 -ELAWKFLQDNWKELLNRYGNNFELSRLISFITEPFATEEKLDEVE 837 (882)
T ss_pred -HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccCCHHHHHHHH
Confidence 1122345555555555522 23333444566666665543
No 23
>PRK04860 hypothetical protein; Provisional
Probab=82.78 E-value=1.7 Score=43.56 Aligned_cols=70 Identities=17% Similarity=0.104 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcccEEEecCCCCccc--cccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHh
Q 036603 280 AMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAM--ENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNW 357 (926)
Q Consensus 280 al~~~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~gaM--En~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqW 357 (926)
....+...+..-+++||.|++-+....-. . ...||+ -..+-|-||...+. ......+..+|.||++|-|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~-R-~rtaG~~~l~~~~I~~Np~ll~-------~~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQ-R-GTSAGTAWLQSNEIRLNPVLLL-------ENQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEee-c-chhhcchhHhcCCeeeCHHHHh-------hCcHHHHHhHHHHHHHHHH
Confidence 34456667777788999888876653322 1 122433 23334556544322 1233457899999999988
Q ss_pred h
Q 036603 358 T 358 (926)
Q Consensus 358 f 358 (926)
-
T Consensus 76 ~ 76 (160)
T PRK04860 76 V 76 (160)
T ss_pred H
Confidence 4
No 24
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=80.31 E-value=2.1 Score=42.28 Aligned_cols=66 Identities=17% Similarity=0.081 Sum_probs=36.0
Q ss_pred HHHHHHHH-HHhCCCCCCCcccEEEecCC--CCccccc-cccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhC
Q 036603 285 KAAMKWDE-DVFGLEYDLDLFNIVAVPDF--NMGAMEN-KSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTG 359 (926)
Q Consensus 285 ~~~l~~~e-~~fG~~YP~~k~~iV~vp~f--~~gaMEn-~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfG 359 (926)
.+.++.++ .+|+.++|-+. +..-... ..|.-.. .+.|.++...+... ....+..+|.||++|.|..
T Consensus 4 ~~~~~~~n~~~F~~~l~~~~--i~w~~r~~~~~G~~~~~~~~I~ln~~l~~~~-------~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 4 TQRLEDASLRVFGRKLPHPK--VVWNKRLRKTGGRCLLKSAEIRLNPKLLTEN-------GRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHHCCCCCCCE--EEEehhhhhhhHHhhcCCCEEEeCHHHHhhc-------cHHHHHhhHHHHHHHHHHH
Confidence 34445555 78987777652 2222211 1233322 34455555433211 1235778999999999975
No 25
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=77.67 E-value=3.5 Score=43.72 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhCCcccccCCCchhHHHHHHHHHHHH
Q 036603 343 AAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQE 383 (926)
Q Consensus 343 ~~i~~viaHElaHqWfGn~Vt~~~w~dlWL~EGfAty~~~~ 383 (926)
..+..+|-||++||=+.-. +|.=+||+||++.+..
T Consensus 195 ~~lA~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~ 229 (376)
T COG4324 195 TYLASLIFHELAHQKIYVN------NDTAFNESFATAVETS 229 (376)
T ss_pred HHHHHHHHHHHhhheEeec------CcchHhHHHHHHHHHH
Confidence 4578999999999976522 3567899999999854
No 26
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=74.99 E-value=15 Score=41.53 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=80.1
Q ss_pred HHHHHHcCCcchHHHHHHHHHHhcCCchHHHHHHHHhhcccCCCChHHHHHHHhcCCCCCCCCCcchhhhhhhccC--CC
Q 036603 772 ALAAIVQKPGKIRDEVLDDFYGKWQHDYLVVNKWFALQAMSDIPGNVECVQRLLDHPAFDLRNPNKVYSLIGGFCG--SP 849 (926)
Q Consensus 772 al~~l~~~~~~~~~~~l~~f~~~~~~~~l~~~kw~~~~a~~~~~~~~~~v~~l~~~~~f~~~~pn~~r~l~~~f~~--n~ 849 (926)
+++.|-..+..+.+.+|++|++..+.... -..+..+.++.++..-- .|+++..++..... ..
T Consensus 45 ~m~~l~~v~~~~~~~vl~eF~~~~~~~~~------------~~~g~~~~~~~~L~~al----g~~~a~~il~~i~~~~~~ 108 (338)
T TIGR00207 45 EIANVTQIDNQQKDDVLEEFEQIAEAQAY------------INIGGLDYAREVLEKAL----GEEKAASILNDLTSSLQT 108 (338)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhcCC------------ccCChHHHHHHHHHHhc----CHHHHHHHHHHHhccccc
Confidence 44444455667788999999998654421 23456777777765432 57788888877752 22
Q ss_pred c-ccccCCCchhHHHHHHHHHhhhcChhHHhhhhhHhh------hhhccCHHHHHHHHHHHHHHHhccCCCccHHHHHHh
Q 036603 850 V-NLHAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFS------RWRRFDETRQNLAKAQLEMIMSANGLSENVFEIASK 922 (926)
Q Consensus 850 ~-~fh~~~g~gy~~~~~~~~~~~~~np~~a~r~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~ls~~~~e~~~~ 922 (926)
. .|..-..-.-+-|+..|. .-.||++|-++.-+. =...|.+..+ ...+.||+...++|+++.+.|++
T Consensus 109 ~~~~~~L~~~~~~~la~~l~---~EhPQ~iAliLs~L~p~~AA~VL~~Lp~~~~---~ei~~ria~l~~vs~~~i~~ie~ 182 (338)
T TIGR00207 109 APGFEFLRKAEPQQIADFIQ---QEHPQTIALILSHLDPAQAADILSLFPEEVQ---AEVARRIATMGRTSPEVVAEVER 182 (338)
T ss_pred CchhHHHHCCCHHHHHHHHH---ccCHHHHHHHHHcCCHHHHHHHHHhCCHHHH---HHHHHHHHhcCCCCHHHHHHHHH
Confidence 2 254444444555555443 334555444443222 1234555443 46678898999999999998877
Q ss_pred hh
Q 036603 923 SL 924 (926)
Q Consensus 923 ~l 924 (926)
.|
T Consensus 183 ~L 184 (338)
T TIGR00207 183 VL 184 (338)
T ss_pred HH
Confidence 66
No 27
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=70.10 E-value=1e+02 Score=35.91 Aligned_cols=79 Identities=18% Similarity=0.054 Sum_probs=55.8
Q ss_pred cCChhHHHHHHHHHHhCCChhHHHHHHHHHHcCCcchHHHHHHHHHHh-cCCchHHHHHHHHhhcccCCCChHHHHHHHh
Q 036603 747 LEDADIVELALREYKTATNMTEQFAALAAIVQKPGKIRDEVLDDFYGK-WQHDYLVVNKWFALQAMSDIPGNVECVQRLL 825 (926)
Q Consensus 747 ~~~~~~~~~~~~~~~~a~nmtd~~~al~~l~~~~~~~~~~~l~~f~~~-~~~~~l~~~kw~~~~a~~~~~~~~~~v~~l~ 825 (926)
.+..++...+. ......|..-|.+|+.+|.....++.-..+..||.+ -...+..+-.++++. ..+..++.+..|+
T Consensus 174 l~~~~a~~~L~-~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~---~~~~a~~~L~~ll 249 (410)
T TIGR02270 174 LPRRLSESTLR-LYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVA---GGPDAQAWLRELL 249 (410)
T ss_pred hccccchHHHH-HHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhC---CchhHHHHHHHHh
Confidence 33444444444 347788999999999999998887777788887765 223334455555554 5678999999999
Q ss_pred cCCC
Q 036603 826 DHPA 829 (926)
Q Consensus 826 ~~~~ 829 (926)
+.+.
T Consensus 250 ~d~~ 253 (410)
T TIGR02270 250 QAAA 253 (410)
T ss_pred cChh
Confidence 9865
No 28
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=66.78 E-value=6.8 Score=43.79 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhCCcccccCCCchhHHHHHHHHHHHHH
Q 036603 344 AILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEF 384 (926)
Q Consensus 344 ~i~~viaHElaHqWfGn~Vt~~~w~dlWL~EGfAty~~~~~ 384 (926)
.+..+|-||++||=+.- -.|.=+||+||+|.+.+-
T Consensus 164 ~LA~LIfHELaHq~~Yv------~~dt~FNEsfAtfVe~~G 198 (337)
T PF10023_consen 164 ELARLIFHELAHQTLYV------KGDTAFNESFATFVEREG 198 (337)
T ss_pred HHHHHHHHHHhhceeec------CCCchhhHHHHHHHHHHH
Confidence 57899999999995431 236678999999997543
No 29
>PRK09687 putative lyase; Provisional
Probab=66.74 E-value=1.5e+02 Score=32.53 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcc--CChhHHHHHHHHHHhCCChhHHHHHHHHHHcCCcchHHHHHHHHHHhcCCchHHHHHHHHhhcc--
Q 036603 736 LKNIALAYLASL--EDADIVELALREYKTATNMTEQFAALAAIVQKPGKIRDEVLDDFYGKWQHDYLVVNKWFALQAM-- 811 (926)
Q Consensus 736 l~n~~l~~l~~~--~~~~~~~~~~~~~~~a~nmtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~l~~~kw~~~~a~-- 811 (926)
+|+.+..-|... +++.+...+.... ...|-.-|.+|..+|.....+..- ....+..++..+.+ -++.|-
T Consensus 175 VR~~A~~aLg~~~~~~~~~~~~L~~~L-~D~~~~VR~~A~~aLg~~~~~~av---~~Li~~L~~~~~~~---~a~~ALg~ 247 (280)
T PRK09687 175 VRNWAAFALNSNKYDNPDIREAFVAML-QDKNEEIRIEAIIGLALRKDKRVL---SVLIKELKKGTVGD---LIIEAAGE 247 (280)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHccCChhHH---HHHHHHHcCCchHH---HHHHHHHh
Confidence 444444444432 2455555555444 344667788888898887766444 44444444444322 233332
Q ss_pred cCCCChHHHHHHHhc-CCC
Q 036603 812 SDIPGNVECVQRLLD-HPA 829 (926)
Q Consensus 812 ~~~~~~~~~v~~l~~-~~~ 829 (926)
-..+..+..++.|++ +|+
T Consensus 248 ig~~~a~p~L~~l~~~~~d 266 (280)
T PRK09687 248 LGDKTLLPVLDTLLYKFDD 266 (280)
T ss_pred cCCHhHHHHHHHHHhhCCC
Confidence 234567888888885 664
No 30
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=62.88 E-value=23 Score=36.44 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHh
Q 036603 344 AILGVIGHEYFHNW 357 (926)
Q Consensus 344 ~i~~viaHElaHqW 357 (926)
....++|||++|++
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 45679999999997
No 31
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=62.63 E-value=33 Score=35.32 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=21.3
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHhhCC
Q 036603 333 SPETASDADYAAILGVIGHEYFHNWTGN 360 (926)
Q Consensus 333 ~~~~~t~~~~~~i~~viaHElaHqWfGn 360 (926)
.+....-..+..|..++.||++|+++|+
T Consensus 70 ~~~~~~fl~~~~i~~t~lHELaH~~~~~ 97 (186)
T PF08325_consen 70 TPDDGGFLPYETILGTMLHELAHNVHGP 97 (186)
T ss_pred CCCCCCEeeHHHHHHHHHHHHHhcccCC
Confidence 3333334566789999999999999987
No 32
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=61.91 E-value=36 Score=38.60 Aligned_cols=128 Identities=15% Similarity=0.206 Sum_probs=75.5
Q ss_pred HHHcCCcchHHHHHHHHHHhcCCchHHHHHHHHhhcccCCCChHHHHHHHhcCCCCCCCCCcchhhhhhhccC-CC-ccc
Q 036603 775 AIVQKPGKIRDEVLDDFYGKWQHDYLVVNKWFALQAMSDIPGNVECVQRLLDHPAFDLRNPNKVYSLIGGFCG-SP-VNL 852 (926)
Q Consensus 775 ~l~~~~~~~~~~~l~~f~~~~~~~~l~~~kw~~~~a~~~~~~~~~~v~~l~~~~~f~~~~pn~~r~l~~~f~~-n~-~~f 852 (926)
.|-..+..+.+++|.+|++..+.. + ....+..+.++.++.+- -.+++...++..+.. ++ ..|
T Consensus 51 ~l~~vs~~~~~~vL~ef~~~~~~~-----------~-~~~~gg~~~~~~iL~~~----l~~~~a~~il~~i~~~~~~~~f 114 (339)
T PRK05686 51 NLRNVSPEQVEAVLEEFEDEFEAG-----------A-YILMGGIDYARSLLEKA----LGEEKADSILERILESLGTSGF 114 (339)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhc-----------c-cccCChHHHHHHHHHHH----cCHHHHHHHHHHHhccccCchH
Confidence 333334556788899999885432 1 23456788888888641 135788888888763 22 233
Q ss_pred ccCCCchhHHHHHHHHHhhhcChhHHhhhhhHhhh------hhccCHHHHHHHHHHHHHHHhccCCCccHHHHHHhhh
Q 036603 853 HAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFSR------WRRFDETRQNLAKAQLEMIMSANGLSENVFEIASKSL 924 (926)
Q Consensus 853 h~~~g~gy~~~~~~~~~~~~~np~~a~r~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~ls~~~~e~~~~~l 924 (926)
..-..-.=+-++..|. ..+||+.|-+++-+.. ...|.+. .....+.||+...++|+++.+.|++.|
T Consensus 115 e~L~~ld~~~l~~lL~---~EhpqtiA~iLs~l~~~~aa~vL~~l~~~---~~~~v~~ria~l~~v~~~~~~~i~~~L 186 (339)
T PRK05686 115 DFLRKMDPQQLANFIR---NEHPQTIALILSYLKPDQAAEILSLLPEE---LRADVMMRIATLEGVSPEALKEVEEVL 186 (339)
T ss_pred HHHhcCCHHHHHHHHH---hcCHHHHHHHHhCCCHHHHHHHHHhCCHH---HHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 3333333344444333 2345544444332211 1223333 344678899999999999999998776
No 33
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=61.16 E-value=11 Score=39.91 Aligned_cols=71 Identities=21% Similarity=0.148 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcccEEEecCCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhh
Q 036603 279 HAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWT 358 (926)
Q Consensus 279 ~al~~~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWf 358 (926)
.+.+.+...++.+.+.+|.++.- +.+-.... ..|.-...|-+.|+...+.+++ .-+..|++||++|-=.
T Consensus 120 ~~~~~l~~~~~~~~~~l~~~~~~--~~ik~~k~-~WGScs~~~~i~~~~~l~~~p~--------~~i~YVvvHELaHLke 188 (223)
T COG1451 120 ILREILEIRLKEYAKKLGVPPRA--IKLKNMKR-RWGSCSKAGEIRFNWRLVMAPE--------EVIDYVVVHELAHLKE 188 (223)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc--eeeeeccc-eeeeecCCCcEEeehhhhcCCH--------HHHHHHHHHHHHHHhh
Confidence 44456677788889999976553 33322222 2455555566666665544332 3578899999999988
Q ss_pred CC
Q 036603 359 GN 360 (926)
Q Consensus 359 Gn 360 (926)
.|
T Consensus 189 ~n 190 (223)
T COG1451 189 KN 190 (223)
T ss_pred hh
Confidence 87
No 34
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=59.59 E-value=15 Score=32.11 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=33.8
Q ss_pred hhhcChhHHhhhhhHhhhhhccCHHHHHHHHHHHHHHHhccCCCccHHHHHHhhhc
Q 036603 870 LDKINPQVASRMVSAFSRWRRFDETRQNLAKAQLEMIMSANGLSENVFEIASKSLA 925 (926)
Q Consensus 870 ~~~~np~~a~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ls~~~~e~~~~~l~ 925 (926)
|..++|..||.++..| .+++|. +.+.||+...++|+++.+.|++.|.
T Consensus 21 Ls~L~~~~AA~VL~~l------p~e~r~---~v~~Ria~~~~v~~~~i~~ie~~L~ 67 (79)
T PF14841_consen 21 LSYLPPEQAAEVLSQL------PEELRA---EVVRRIARLESVSPEVIEEIEEVLE 67 (79)
T ss_dssp HHTS-HHHHHHHHHTS-------HHHHH---HHHHHHHTCCCCSHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHC------CHHHHH---HHHHHHHccCCCCHHHHHHHHHHHH
Confidence 3445666777766554 455544 6788999999999999999999873
No 35
>PRK03982 heat shock protein HtpX; Provisional
Probab=57.46 E-value=16 Score=40.33 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCCCCCcccEEEecCCCCccc---cccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCC
Q 036603 284 LKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAM---ENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGN 360 (926)
Q Consensus 284 ~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~gaM---En~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn 360 (926)
+.+.++-+.+..|+| .+++.++.-+.-|.-+. ...+.++..+..+- ..+.+.+..|+|||++|-=-++
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~-------~l~~~El~AVlAHElgHi~~~h 140 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIVPTQTPNAFATGRDPKHAVVAVTEGILN-------LLNEDELEGVIAHELTHIKNRD 140 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEEeCCCcceEEeccCCCCeEEEeehHHHh-------hCCHHHHHHHHHHHHHHHHcCC
Confidence 445555556677764 45665554332222222 22344445544331 1123458899999999976554
No 36
>PRK05457 heat shock protein HtpX; Provisional
Probab=57.25 E-value=13 Score=40.91 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCCCCCCcccEEEecCCCC---ccccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCC
Q 036603 284 LKAAMKWDEDVFGLEYDLDLFNIVAVPDFNM---GAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGN 360 (926)
Q Consensus 284 ~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~---gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn 360 (926)
+.+.++-..+..|. |.|++.++..+..|. |.-.+.+.+++.+..+- .-+.+.+..|+|||++|.--|+
T Consensus 79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~-------~L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTGLLQ-------NMSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehHHhh-------hCCHHHHHHHHHHHHHHHHcCC
Confidence 44556666777786 467777765443332 22223344545443321 1123458899999999977665
Q ss_pred c
Q 036603 361 R 361 (926)
Q Consensus 361 ~ 361 (926)
.
T Consensus 150 ~ 150 (284)
T PRK05457 150 M 150 (284)
T ss_pred H
Confidence 4
No 37
>PRK01345 heat shock protein HtpX; Provisional
Probab=56.93 E-value=14 Score=41.38 Aligned_cols=69 Identities=19% Similarity=0.143 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCCCCCCCcccEEEecCCCCcccc---ccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCC
Q 036603 284 LKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAME---NKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGN 360 (926)
Q Consensus 284 ~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~gaME---n~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn 360 (926)
+.+.++-+.+..|+| .+++-++-.+..|.-+.- ..+.+++.+..+-. . +.+.+..|+|||++|-==++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~gLL~~----L---~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTGLLQR----L---SPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechHHHhh----C---CHHHHHHHHHHHHHHHHcCC
Confidence 456666667778875 456655544333333332 12344444443311 1 22358899999999976554
Q ss_pred c
Q 036603 361 R 361 (926)
Q Consensus 361 ~ 361 (926)
.
T Consensus 140 ~ 140 (317)
T PRK01345 140 T 140 (317)
T ss_pred H
Confidence 3
No 38
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=55.84 E-value=35 Score=33.88 Aligned_cols=75 Identities=23% Similarity=0.368 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCCC--cccEEEecCCC--C-cccccccccccccccc-ccCCCCCChHHHHHHHHH
Q 036603 275 PKTAHAMYSLKAAMKWDEDVFGLEYDLD--LFNIVAVPDFN--M-GAMENKSLNIFNSKLV-LASPETASDADYAAILGV 348 (926)
Q Consensus 275 ~~~~~al~~~~~~l~~~e~~fG~~YP~~--k~~iV~vp~f~--~-gaMEn~Gli~~~~~~l-l~~~~~~t~~~~~~i~~v 348 (926)
..+..|...+.++.+||.++||+. +++ -..++..=.+. . -|.=+-.-++|....- ...| ...-..|
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~gr~-siD~~G~~~~~~Vhyg~~~~NAfW~g~~m~yGdG~~~~f~~-------~~~~lDV 138 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFGRN-SIDGNGMPIISRVHYGKNYNNAFWNGSQMVYGDGDGQIFKP-------FASSLDV 138 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS--STTSS-S-EEEEESESSSTT-EEE-SSSEEEE---SSSBS--------GGG-HHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHCCC-CcCCCCcEEEEEEeCCCCccCccccCCEEEEECCCCccccc-------Cccccce
Confidence 346667778899999999999953 544 23444322221 1 1322223444443221 1111 1112469
Q ss_pred HHHHHHHHh
Q 036603 349 IGHEYFHNW 357 (926)
Q Consensus 349 iaHElaHqW 357 (926)
+|||++|--
T Consensus 139 vaHEltHGV 147 (150)
T PF01447_consen 139 VAHELTHGV 147 (150)
T ss_dssp HHHHHHHHH
T ss_pred eeecccccc
Confidence 999999963
No 39
>PRK04351 hypothetical protein; Provisional
Probab=54.30 E-value=7.8 Score=38.37 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=30.2
Q ss_pred HHHHHhCCCCCCCcccEEEecCC-CCcccc--ccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHh
Q 036603 290 WDEDVFGLEYDLDLFNIVAVPDF-NMGAME--NKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNW 357 (926)
Q Consensus 290 ~~e~~fG~~YP~~k~~iV~vp~f-~~gaME--n~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqW 357 (926)
+-+++|+.|+|. .+..-... ..||.= ....|-+|+..+ .......+..+|+||++|-+
T Consensus 13 ~s~~~F~~~f~~---~v~~n~RlrttgG~~~l~~~~I~lnp~ll-------~~~~~~~l~~vv~HElcH~~ 73 (149)
T PRK04351 13 ISLEYFGKPFRH---QAYFNKRLRTTGGRYLLKDHHIEFNPKML-------EEYGLEELIGIIKHELCHYH 73 (149)
T ss_pred HHHHHhCCCCCc---EEEEeccchhhhheeecCCCeEEeCHHHH-------hhccHHHHHhhHHHHHHHHH
Confidence 345889987773 33322111 123221 122344444432 22224567899999999953
No 40
>PRK02870 heat shock protein HtpX; Provisional
Probab=53.72 E-value=21 Score=40.37 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCCCCcccEEEecCCCCcccc---ccccccccccccccCCCCCChHHHHHHHHHHHHHHHHH
Q 036603 285 KAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAME---NKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHN 356 (926)
Q Consensus 285 ~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~gaME---n~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHq 356 (926)
.+.++-+....|.|+ .+++.++--+.-|.-++- .-+.+.+.+..+- .. +.+.+..|+|||++|-
T Consensus 118 ~~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~GLL~----~L---~~dEL~aVlAHELgHi 184 (336)
T PRK02870 118 YNVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTGLLE----KL---DRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehHHhh----hC---CHHHHHHHHHHHHHHH
Confidence 344444455567653 246655544433333331 2245555555431 11 2345889999999995
No 41
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=52.68 E-value=6.7 Score=41.14 Aligned_cols=72 Identities=17% Similarity=0.057 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCCCCCcccEEEecCCCCccccccc--cccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCCccc
Q 036603 286 AAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKS--LNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGNRVT 363 (926)
Q Consensus 286 ~~l~~~e~~fG~~YP~~k~~iV~vp~f~~gaMEn~G--li~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn~Vt 363 (926)
+.++-.-+..|.++|.+++-++..+..+..++-... .++.....+. . .+...+..+++||++|-.-++...
T Consensus 35 ~~v~~l~~~~~~~~~~~~v~v~~~~~~NA~~~g~~~~~~I~v~~~ll~-~------~~~~el~aVlaHElgH~~~~h~~~ 107 (226)
T PF01435_consen 35 RIVEELARRAGLGIPPPRVYVIDSPSPNAFATGGGPRKRIVVTSGLLE-S------LSEDELAAVLAHELGHIKHRHILK 107 (226)
T ss_dssp HHHHHHHHHHHCTSS--EEEEE--SSEEEEEETTTC--EEEEEHHHHH-H------SSHHHHHHHHHHHHHHHHTTHCCC
T ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCCCcEEEEccCCCcEEEEeChhhh-c------ccHHHHHHHHHHHHHHHHcCCcch
Confidence 333333444455566666655555543322221111 1334444331 1 123357889999999999876654
Q ss_pred c
Q 036603 364 C 364 (926)
Q Consensus 364 ~ 364 (926)
.
T Consensus 108 ~ 108 (226)
T PF01435_consen 108 S 108 (226)
T ss_dssp C
T ss_pred H
Confidence 4
No 42
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=51.77 E-value=24 Score=36.71 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhCCcccccCCCchhHHHHHHHHHHHHHHHHh
Q 036603 346 LGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDM 388 (926)
Q Consensus 346 ~~viaHElaHqWfGn~Vt~~~w~dlWL~EGfAty~~~~~~~~~ 388 (926)
-.++|||+.|-|. +..--.--.+++-||+..-+++.|.+..
T Consensus 94 gsiLAHE~mHa~L--rl~g~~~L~~~vEEGiCqvla~~wL~~~ 134 (212)
T PF12315_consen 94 GSILAHELMHAWL--RLNGFPNLSPEVEEGICQVLAYLWLESE 134 (212)
T ss_pred hhHHHHHHHHHHh--cccCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 4689999999996 2222223367999999999998887643
No 43
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=51.68 E-value=64 Score=28.23 Aligned_cols=39 Identities=10% Similarity=0.219 Sum_probs=31.0
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Q 036603 431 RMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFFAAMRDA 470 (926)
Q Consensus 431 ~ML~~~lG~e~F~~~lr~Yl~~~~~~~~t~~Df~~~le~~ 470 (926)
.+-+..+.++-| ..|..|+++|..++++.++|..++-+.
T Consensus 10 e~Ar~lL~e~E~-~tm~yyl~eY~~~~~tVealV~aL~el 48 (81)
T cd07357 10 EQARHLLSENER-ATLSYYLDEYRSGHISVDALVMALFEL 48 (81)
T ss_pred HHHHHHcCHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 344556666555 789999999999999999999888663
No 44
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=51.35 E-value=75 Score=35.93 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=80.5
Q ss_pred HHHHHHcCCcchHHHHHHHHHHhcCCchHHHHHHHHhhcccCCCChHHHHHHHhcCCCCCCCCCcchhhhhhhccCC--C
Q 036603 772 ALAAIVQKPGKIRDEVLDDFYGKWQHDYLVVNKWFALQAMSDIPGNVECVQRLLDHPAFDLRNPNKVYSLIGGFCGS--P 849 (926)
Q Consensus 772 al~~l~~~~~~~~~~~l~~f~~~~~~~~l~~~kw~~~~a~~~~~~~~~~v~~l~~~~~f~~~~pn~~r~l~~~f~~n--~ 849 (926)
+++.|-..+..+.+.+|++|++..+.... -..+..+.++.++.. +| .|++.+.++.....+ .
T Consensus 43 ~m~~l~~v~~~~~~~vl~eF~~~~~~~~~------------~~~g~~~~~~~~L~~-al---g~~~a~~il~~i~~~~~~ 106 (334)
T PRK07194 43 KMARLSGIKVDQARQVLQRFFDDYREQSG------------INGASRSYLQRTLNK-AL---GGDIAKSLINSIYGDEIR 106 (334)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhcCC------------cccchHHHHHHHHHH-Hc---CHHHHHHHHHHHhccccC
Confidence 34444455667788999999999654321 234567777777763 22 378888888776422 2
Q ss_pred cccccCCCchhHHHHHHHHHhhhcChhHHhhhhhHhh------hhhccCHHHHHHHHHHHHHHHhccCCCccHHHHHHhh
Q 036603 850 VNLHAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFS------RWRRFDETRQNLAKAQLEMIMSANGLSENVFEIASKS 923 (926)
Q Consensus 850 ~~fh~~~g~gy~~~~~~~~~~~~~np~~a~r~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~ls~~~~e~~~~~ 923 (926)
..|..-..---+.|++. |..-.||++|-++..+. -.+.|++..+ ...+.||+....+|+++.+.|...
T Consensus 107 ~~~~~L~~~~~~~la~~---l~~EhPQ~iAiiL~~L~~e~AA~VL~~Lpe~~~---~~v~~ria~l~~Vs~e~~~~V~e~ 180 (334)
T PRK07194 107 HRMQRLQWVDPQQLARL---IANEHLQMQAVFLAFLPPESAAAVLKYLPEDRQ---DDILYRIAQLDDVDRDVVDELDEL 180 (334)
T ss_pred chHHHHHCCCHHHHHHH---HHccCHHHHHHHHHhcCHHHHHHHHHhCCHHHH---HHHHHHHHccCCCCHHHHHHHHHH
Confidence 22322222222333333 24567888888777663 2456776544 456778888899999998777544
Q ss_pred h
Q 036603 924 L 924 (926)
Q Consensus 924 l 924 (926)
|
T Consensus 181 l 181 (334)
T PRK07194 181 I 181 (334)
T ss_pred H
Confidence 3
No 45
>PRK03001 M48 family peptidase; Provisional
Probab=51.10 E-value=17 Score=39.95 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCcccEEEecCCCC---ccccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhC
Q 036603 283 SLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNM---GAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTG 359 (926)
Q Consensus 283 ~~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~---gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfG 359 (926)
.+.+.++-+.+..|+|. +++-++.-+..|. |.-.+.+.|+..+..+- .. +.+.+..|+|||++|-=-+
T Consensus 68 ~L~~~v~~la~~~g~~~--p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~gLl~----~l---~~~El~aVlAHElgHi~~~ 138 (283)
T PRK03001 68 QFYRMVRELAQRAGLPM--PKVYLINEDQPNAFATGRNPEHAAVAATTGILR----VL---SEREIRGVMAHELAHVKHR 138 (283)
T ss_pred HHHHHHHHHHHHcCCCC--CeEEEecCCCcceEEecCCCCCeEEEecHHHHh----hC---CHHHHHHHHHHHHHHHhCC
Confidence 34556666677778654 5655543322222 21112233444444331 11 2345889999999996544
Q ss_pred C
Q 036603 360 N 360 (926)
Q Consensus 360 n 360 (926)
+
T Consensus 139 h 139 (283)
T PRK03001 139 D 139 (283)
T ss_pred C
Confidence 3
No 46
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=50.51 E-value=4.8e+02 Score=33.17 Aligned_cols=126 Identities=11% Similarity=0.051 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhCCccccc-CCCchhHHHHHHHHHHHHHHH-H-------hc--CHHHHHHHHHHHhhhccCCCCCCCC
Q 036603 346 LGVIGHEYFHNWTGNRVTCR-DWFQLSLKEGLTVFRDQEFSS-D-------MG--SRTVKRIADVSKLRNYQFPQDAGPM 414 (926)
Q Consensus 346 ~~viaHElaHqWfGn~Vt~~-~w~dlWL~EGfAty~~~~~~~-~-------~~--~~~~~r~~~~~~l~~~~~~~D~~~~ 414 (926)
-+.+-|||+|.+=|..+... .+.+.| +-=|+.++++.+.. + +. +.......++... +..
T Consensus 237 nW~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~----i~~----- 306 (775)
T PF03272_consen 237 NWGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIAL----IDN----- 306 (775)
T ss_pred CchhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHH----Hhc-----
Confidence 36789999999988777333 333444 34455555443332 0 00 0000000111110 111
Q ss_pred CCCCCccc-cchHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHh-cCcChHHHH-HH
Q 036603 415 AHPVRPHS-YIKGAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQA-VTCEDFFAAMRDA-NDAEFANFL-LW 481 (926)
Q Consensus 415 ~~pi~~~~-Y~KGa~vl~ML~~~lG~e~F~~~lr~Yl~~~~~~~-~t~~Df~~~le~~-sg~dL~~f~-~W 481 (926)
..|+..-. -.|=..+..|+...-|++.|++.-+.|=+....+. ..--.+++-+... ++.|+..|+ .|
T Consensus 307 ~~~~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~~~~~~~~~~~~i~d~l~~~~~~~D~~p~~~l~ 377 (775)
T PF03272_consen 307 NKPFDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQLNTNGFNPNDHQIFDWLASLYSGYDFTPYFQLV 377 (775)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHhhcCCchHhHHHHh
Confidence 01232222 23444445478888899999887777766522221 1112333455555 888988876 66
No 47
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=49.87 E-value=40 Score=35.50 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHh
Q 036603 346 LGVIGHEYFHNW 357 (926)
Q Consensus 346 ~~viaHElaHqW 357 (926)
..++|||++|+.
T Consensus 146 ~~~~AHElGH~l 157 (220)
T cd04272 146 VYTMTHELAHLL 157 (220)
T ss_pred HHHHHHHHHHHh
Confidence 579999999986
No 48
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=49.53 E-value=23 Score=38.93 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=39.5
Q ss_pred HHHHhCCCCCCCcccEEEecCCCCcccccc---ccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCCccc
Q 036603 291 DEDVFGLEYDLDLFNIVAVPDFNMGAMENK---SLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGNRVT 363 (926)
Q Consensus 291 ~e~~fG~~YP~~k~~iV~vp~f~~gaMEn~---Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn~Vt 363 (926)
....-|.++ -+++.++..|.-+..++.+. |.+.+.+..+- . .+.+.++.|++||++|-=-++.+.
T Consensus 108 ~a~~~~~~~-~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~gLl~----~---l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 108 LARQAGIPH-MPEVYILETPQPNAFALGGGPKNGRVVVTTGLLD----L---LNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHCCCCC-CCeeEEecCCCccceecCCCCCCeeEEecHHHHh----h---CCHHHHHHHHHHHHHHHhcccHHH
Confidence 344555443 35666666665555566553 56666555431 1 122358899999999987776654
No 49
>PRK04897 heat shock protein HtpX; Provisional
Probab=49.23 E-value=23 Score=39.41 Aligned_cols=68 Identities=21% Similarity=0.167 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhCCCCCCCcccEEEecCCCC---ccccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCC
Q 036603 284 LKAAMKWDEDVFGLEYDLDLFNIVAVPDFNM---GAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGN 360 (926)
Q Consensus 284 ~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~---gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn 360 (926)
+.+.++-..+..|+ |.|++-++.-+.-+. |.-.+.+.+++.+..+- .-+.+.+..|+|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~-------~l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLA-------IMNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehHHHh-------hCCHHHHHHHHHHHHHHHhcCC
Confidence 55666666777786 456776664433222 21222344444443321 0122458899999999955444
No 50
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=48.51 E-value=11 Score=34.77 Aligned_cols=18 Identities=17% Similarity=-0.047 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhCCccc
Q 036603 346 LGVIGHEYFHNWTGNRVT 363 (926)
Q Consensus 346 ~~viaHElaHqWfGn~Vt 363 (926)
..+++||++|.+++..-.
T Consensus 43 ~f~laHELgH~~~~~~~~ 60 (122)
T PF06114_consen 43 RFTLAHELGHILLHHGDE 60 (122)
T ss_dssp HHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhhhccc
Confidence 469999999999986653
No 51
>PRK02391 heat shock protein HtpX; Provisional
Probab=46.43 E-value=30 Score=38.44 Aligned_cols=69 Identities=16% Similarity=0.057 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCCCCCcccEEEecCCCCccc---cccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCC
Q 036603 284 LKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAM---ENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGN 360 (926)
Q Consensus 284 ~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~gaM---En~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn 360 (926)
+.+.++-..+..|+| .+++-++..+..+..+. .+.+.+++.+..+- .-+...+..|+|||++|--=++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~-------~L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTGLMR-------RLDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHHHHh-------hCCHHHHHHHHHHHHHHHHcCC
Confidence 445555556777865 45666665443333222 12234444444321 1122357899999999976554
Q ss_pred c
Q 036603 361 R 361 (926)
Q Consensus 361 ~ 361 (926)
.
T Consensus 149 i 149 (296)
T PRK02391 149 V 149 (296)
T ss_pred H
Confidence 3
No 52
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=46.25 E-value=99 Score=26.65 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=24.8
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 036603 736 LKNIALAYLASLEDADIVELALREYKTATNMTEQFAALAAIV 777 (926)
Q Consensus 736 l~n~~l~~l~~~~~~~~~~~~~~~~~~a~nmtd~~~al~~l~ 777 (926)
+|..+...|...+++++...+.+.+.+.++.+-|.+|..+|+
T Consensus 47 vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 47 VRRAAARALGRIGDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHHHCCHHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 444455555555666666666666666666666666666653
No 53
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=45.99 E-value=28 Score=35.98 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=37.0
Q ss_pred EEEEEccCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCcccEEEecCCCC--ccccccccccccc-cccccCCCCCChH
Q 036603 264 SLRIWTPAQDLPKTAHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNM--GAMENKSLNIFNS-KLVLASPETASDA 340 (926)
Q Consensus 264 ~l~vy~~~~~~~~~~~al~~~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~--gaMEn~Gli~~~~-~~ll~~~~~~t~~ 340 (926)
.+.+|..++...-...+-..+....+|-.+.+-...+.+...++.-.++.. .|+-+.|-+.-.. ...+..... .
T Consensus 50 ~leiw~~~d~i~~~~~~~~~L~~F~~w~~~~~~~~~~~D~a~Llt~~~~~~~~~G~a~~~~~C~~~~s~~i~~~~~---~ 126 (199)
T PF01421_consen 50 GLEIWTEEDKINISNDADSTLENFCNWQKSELPPRIHHDHAHLLTGKDFPDSTVGLAYVGGMCSPSRSCGIVEDHS---R 126 (199)
T ss_dssp EEEEESSSTSS---SSHHHHHHHHHHHHHHTHHHHS--SEEEEEESS-CSCCBSEEE-TT-TTSTTTSEEEEE-SS---S
T ss_pred EEEEcccCCceeeecchHHHHHHHHHHHHhhcccccccceeEEeeecccccceeeeEeCCCCCCcCCCCcEeeecc---c
Confidence 456776655443222233344555555554331012333333333344432 2444554332221 111111110 1
Q ss_pred HHHHHHHHHHHHHHHH
Q 036603 341 DYAAILGVIGHEYFHN 356 (926)
Q Consensus 341 ~~~~i~~viaHElaHq 356 (926)
.......++|||++|.
T Consensus 127 ~~~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 127 SGLSFAVIIAHELGHN 142 (199)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 2334667999999996
No 54
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=44.75 E-value=8.2e+02 Score=31.68 Aligned_cols=108 Identities=13% Similarity=0.004 Sum_probs=56.9
Q ss_pred hCCChhHHHHHHHHHHcCCcchHHHHHHHHHHhcCCchHHHHHHHHhhcccC--CCChHHHHHHHhcCCCCCCCCCcchh
Q 036603 762 TATNMTEQFAALAAIVQKPGKIRDEVLDDFYGKWQHDYLVVNKWFALQAMSD--IPGNVECVQRLLDHPAFDLRNPNKVY 839 (926)
Q Consensus 762 ~a~nmtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~l~~~kw~~~~a~~~--~~~~~~~v~~l~~~~~f~~~~pn~~r 839 (926)
...+..-|.+|..+|...+.++ .|..+... .++.|--..-..-+... .+..++.+.+++++++ |.--.
T Consensus 724 ~D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D--~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d-----~~VR~ 793 (897)
T PRK13800 724 GDPDHRVRIEAVRALVSVDDVE---SVAGAATD--ENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPD-----PLVRA 793 (897)
T ss_pred cCCCHHHHHHHHHHHhcccCcH---HHHHHhcC--CCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCC-----HHHHH
Confidence 3445567888888888765432 23333222 34444433332222222 2334678888888886 66556
Q ss_pred hhhhhccCCCcccccCCCchhHHHHHHHHHhhhcChhHHhhhhhHhhh
Q 036603 840 SLIGGFCGSPVNLHAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFSR 887 (926)
Q Consensus 840 ~l~~~f~~n~~~fh~~~g~gy~~~~~~~~~~~~~np~~a~r~~~~~~~ 887 (926)
+.+.+++.. |..-......+..|..-+|+|=...+.++..
T Consensus 794 aA~~aLg~~--------g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~ 833 (897)
T PRK13800 794 AALAALAEL--------GCPPDDVAAATAALRASAWQVRQGAARALAG 833 (897)
T ss_pred HHHHHHHhc--------CCcchhHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 666776411 1111222334445555667766666666554
No 55
>PRK03072 heat shock protein HtpX; Provisional
Probab=44.23 E-value=30 Score=38.27 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcccEEEecCCCCccc---cccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhC
Q 036603 283 SLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAM---ENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTG 359 (926)
Q Consensus 283 ~~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~gaM---En~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfG 359 (926)
.+.+.++-+.+..|+ |.+++-++..+..|.-+. ...+.++..+. ++. ..+.+.+..|+|||++|-=-|
T Consensus 71 ~L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll~------~l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-ILQ------ILNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HHH------hCCHHHHHHHHHHHHHHHhcC
Confidence 455666777788886 456776665443332221 11112322222 221 112345889999999995544
Q ss_pred Cc
Q 036603 360 NR 361 (926)
Q Consensus 360 n~ 361 (926)
+.
T Consensus 142 d~ 143 (288)
T PRK03072 142 DI 143 (288)
T ss_pred CH
Confidence 43
No 56
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=42.53 E-value=37 Score=27.31 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCcChHHHHHHHh
Q 036603 439 SQGFRKGMDLYFKRHDGQAVTCEDFFAAMRDANDAEFANFLLWYS 483 (926)
Q Consensus 439 ~e~F~~~lr~Yl~~~~~~~~t~~Df~~~le~~sg~dL~~f~~W~~ 483 (926)
++..+..++.++...+..++|..++.+.+++..|.||+....++.
T Consensus 2 d~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~dL~~~K~~I~ 46 (54)
T PF08766_consen 2 DEEIREAIREILREADLDTVTKKQVREQLEERFGVDLSSRKKFIK 46 (54)
T ss_dssp HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS--SHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 466788999999999999999999999999999999987665553
No 57
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=42.44 E-value=41 Score=39.17 Aligned_cols=102 Identities=17% Similarity=0.250 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCC-CCCCcccEEEecCCCCccccccccccc-cccccccCCCCCChHHHHHHHHHHHH
Q 036603 274 LPKTAHAMYSLKAAMKWDEDVFGLE-YDLDLFNIVAVPDFNMGAMENKSLNIF-NSKLVLASPETASDADYAAILGVIGH 351 (926)
Q Consensus 274 ~~~~~~al~~~~~~l~~~e~~fG~~-YP~~k~~iV~vp~f~~gaMEn~Gli~~-~~~~ll~~~~~~t~~~~~~i~~viaH 351 (926)
...+..|-..+....+||.++||+. |+=.-+.++..-.|.. --+|. .+ ++.+++.|.+...-........|+||
T Consensus 268 ~~a~~dAh~~~g~vyD~yk~~fgr~S~Dn~g~~l~s~vHyG~-~ynNA---fWdG~qMvyGDGDG~~f~~~S~sLDVvAH 343 (507)
T COG3227 268 DEAAVDAHYNAGKVYDYYKNTFGRNSYDNNGMPLVSTVHYGK-NYNNA---FWDGDQMVYGDGDGSFFTPFSGSLDVVAH 343 (507)
T ss_pred hhhhHHHHhhcchHHHHHHHHhcccCcCCCCCceEEEEeecc-ccccc---cccCceeEeecCCcceecccccccceehh
Confidence 3445556667889999999999954 4434455555433311 12221 01 12222333222111111112359999
Q ss_pred HHHHHhhC---CcccccCCCchhHHHHHHHHHH
Q 036603 352 EYFHNWTG---NRVTCRDWFQLSLKEGLTVFRD 381 (926)
Q Consensus 352 ElaHqWfG---n~Vt~~~w~dlWL~EGfAty~~ 381 (926)
|+.|--.+ +++.-..- -=|||+|+.-+.
T Consensus 344 ElTHGvtq~tA~L~Y~~qs--GALNEsfSDvfG 374 (507)
T COG3227 344 ELTHGVTQQTAGLIYRGQS--GALNESFSDVFG 374 (507)
T ss_pred hhcchhhhhccCceecCCC--CchhhHHHHHHH
Confidence 99996554 55544432 358999997665
No 58
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=39.66 E-value=23 Score=41.18 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=34.6
Q ss_pred CCCcccEEEecCCCCcccccccc-ccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhCCc
Q 036603 300 DLDLFNIVAVPDFNMGAMENKSL-NIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGNR 361 (926)
Q Consensus 300 P~~k~~iV~vp~f~~gaMEn~Gl-i~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfGn~ 361 (926)
|-..|.++.|.|-...|.-.+|- +..++..++.-+ + ...+.+|||||++|-==++.
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae---~---esElagViAHEigHv~qrH~ 146 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE---N---ESELAGVIAHEIGHVAQRHL 146 (484)
T ss_pred CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC---C---HHHHHHHHHHHHHHHhhhhH
Confidence 44567788887654445556554 444666665433 1 12478999999999544443
No 59
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=39.33 E-value=34 Score=33.68 Aligned_cols=82 Identities=21% Similarity=0.013 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcccEEEecCCCCc-cccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHH----
Q 036603 282 YSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMG-AMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHN---- 356 (926)
Q Consensus 282 ~~~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~g-aMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHq---- 356 (926)
..+.+.++--+..|+..||-++...=. ..-..| +-=-.+-|=+|...+. ......+..+|.||+||-
T Consensus 5 ~~L~~~~~~as~~~~r~~~~p~~~~n~-Rg~taG~ayL~~~~I~lNP~ll~-------en~~~f~~~vV~HELaHl~ly~ 76 (156)
T COG3091 5 RKLQQCVEQASLKFFRKFFRPKASYNQ-RGRTAGGAYLLKSEIRLNPKLLE-------ENGEDFIEQVVPHELAHLHLYQ 76 (156)
T ss_pred HHHHHHHHHHHHHhcCCCCCcceehhh-hhhhcchhhccccccccCHHHHH-------HccHHHHHHHHHHHHHHHHHHH
Confidence 345666666777666688888763211 001112 1111123334443332 111235778999999984
Q ss_pred hhCCcccccCCCchhH
Q 036603 357 WTGNRVTCRDWFQLSL 372 (926)
Q Consensus 357 WfGn~Vt~~~w~dlWL 372 (926)
=|| .+-+.+-..=||
T Consensus 77 ~~g-r~~phg~ewk~l 91 (156)
T COG3091 77 EFG-RYKPHGKEWKLL 91 (156)
T ss_pred HcC-CCCCCchhHHHH
Confidence 455 666665433344
No 60
>PRK01265 heat shock protein HtpX; Provisional
Probab=36.47 E-value=48 Score=37.26 Aligned_cols=66 Identities=21% Similarity=0.079 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCCCCCCcccEEEecCCCCcc----ccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHhhC
Q 036603 284 LKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGA----MENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTG 359 (926)
Q Consensus 284 ~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~ga----MEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHqWfG 359 (926)
+.+.++-+.+..|+ |.+++-++..+.-+.-+ ..+ +-++..+..+- ..+.+.++.|+|||++|-=-+
T Consensus 85 L~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~-~~Ivvt~gLl~-------~l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 85 LYSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAG-KRIAITLPLLK-------ILNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCC-CEEEEehHHHh-------hCCHHHHHHHHHHHHHHHHcc
Confidence 44555556677776 45676666443322212 112 23334333221 112345889999999995433
No 61
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=36.22 E-value=1.4e+02 Score=31.28 Aligned_cols=13 Identities=46% Similarity=0.363 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q 036603 344 AILGVIGHEYFHN 356 (926)
Q Consensus 344 ~i~~viaHElaHq 356 (926)
.++.+|+|||.|-
T Consensus 132 ~~~hvi~HEiGH~ 144 (211)
T PF12388_consen 132 VIEHVITHEIGHC 144 (211)
T ss_pred HHHHHHHHHhhhh
Confidence 3677999999995
No 62
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=35.87 E-value=44 Score=38.58 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCCCCCCcccEEEecCC-------CCccccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHH
Q 036603 286 AAMKWDEDVFGLEYDLDLFNIVAVPDF-------NMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHN 356 (926)
Q Consensus 286 ~~l~~~e~~fG~~YP~~k~~iV~vp~f-------~~gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHElaHq 356 (926)
.-++..-+-.| +|.+++.++....- -.|---++.+++|..= +. + ...-+.+.+..+++||++|-
T Consensus 221 ~~Ie~la~s~g--fp~~k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyDtL-l~-~---~~~~~~eel~AVl~HELGHW 291 (428)
T KOG2719|consen 221 EKIERLADSVG--FPLSKYRVIDGSKRSSHSNAYFYGLCKNKRIVIYDTL-LL-E---EEHLNNEELVAVLAHELGHW 291 (428)
T ss_pred HHHHHHHHhcC--CCceEEEEEecCCCCCCCCeeeeeccccceEEEehhh-hh-h---hhccccHHHHHHHHHHhhHH
Confidence 34444455665 79999999885321 1122233444444321 11 0 01112345789999999993
No 63
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=34.84 E-value=94 Score=38.79 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=49.9
Q ss_pred EEEEEEccCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCcccEEEecCCCC--cccccccccc---ccccccccCCCCC
Q 036603 263 VSLRIWTPAQDLPKTAHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNM--GAMENKSLNI---FNSKLVLASPETA 337 (926)
Q Consensus 263 v~l~vy~~~~~~~~~~~al~~~~~~l~~~e~~fG~~YP~~k~~iV~vp~f~~--gaMEn~Gli~---~~~~~ll~~~~~~ 337 (926)
+.+.+|..++.......+.+.+..-+.|=..++...-|.+..-++..-.|.. .|+.+.|-+. ++........
T Consensus 241 v~lE~Wt~~dki~~~~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~~~--- 317 (716)
T KOG3607|consen 241 VGLEIWTDGNKIDVSEDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKFHS--- 317 (716)
T ss_pred EEEEecCCCCeecccccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeecCc---
Confidence 3477888887766666677777777787776665444655555554422211 2444443211 1111111111
Q ss_pred ChHHHHHHHHHHHHHHHHHh
Q 036603 338 SDADYAAILGVIGHEYFHNW 357 (926)
Q Consensus 338 t~~~~~~i~~viaHElaHqW 357 (926)
. .......++||||+|+-
T Consensus 318 ~--~~~~~a~v~AhelgH~l 335 (716)
T KOG3607|consen 318 D--ILLAFAVVLAHELGHNL 335 (716)
T ss_pred c--cchhHHHHHHHHHHhhc
Confidence 1 13356789999999974
No 64
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=34.28 E-value=2.3e+02 Score=36.33 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhCCChhHHHHHHHHHHcCCcch-HHHHHHHH
Q 036603 735 ALKNIALAYLASLEDADIVELALREYKTATNMTEQFAALAAIVQKPGKI-RDEVLDDF 791 (926)
Q Consensus 735 ~l~n~~l~~l~~~~~~~~~~~~~~~~~~a~nmtd~~~al~~l~~~~~~~-~~~~l~~f 791 (926)
.||..++..++..+..+... +.++|+..++-+++..+|.||++...++ .+++++.+
T Consensus 670 dlr~~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~ 726 (831)
T TIGR02412 670 DLRWRIIARLAALGFIDADD-IAAELERDNTASGEEHAAAARAARPDAAAKREAWQKL 726 (831)
T ss_pred hHHHHHHHHHHhcCCCCHHH-HHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 46667777777655444444 6778999999999999999999987765 33344444
No 65
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=34.12 E-value=6e+02 Score=30.83 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=59.2
Q ss_pred cCChhHHHHHHHHHHh-C--CChhHHHHHHHHHHcC----CcchHHHHHHHHHHhcCCchHHHHHHHHhhcccCCCChHH
Q 036603 747 LEDADIVELALREYKT-A--TNMTEQFAALAAIVQK----PGKIRDEVLDDFYGKWQHDYLVVNKWFALQAMSDIPGNVE 819 (926)
Q Consensus 747 ~~~~~~~~~~~~~~~~-a--~nmtd~~~al~~l~~~----~~~~~~~~l~~f~~~~~~~~l~~~kw~~~~a~~~~~~~~~ 819 (926)
.|.+....... .|-. . .+.--|.+|+.||-.. +...++.++.-|.++-.+.-+.+-..+.+--+.|....+.
T Consensus 473 ~g~~~~i~~l~-~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~ 551 (574)
T smart00638 473 AGHPSSIKVLE-PYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQ 551 (574)
T ss_pred cCChhHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHH
Confidence 45666554433 3433 2 2345677888888632 3344778888888888888899999999999989988999
Q ss_pred HHHHHhcCCC
Q 036603 820 CVQRLLDHPA 829 (926)
Q Consensus 820 ~v~~l~~~~~ 829 (926)
+|...+.+..
T Consensus 552 ~ia~~l~~E~ 561 (574)
T smart00638 552 RIAELLNKEP 561 (574)
T ss_pred HHHHHHhhcC
Confidence 9998887644
No 66
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=33.03 E-value=27 Score=35.48 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHh
Q 036603 346 LGVIGHEYFHNW 357 (926)
Q Consensus 346 ~~viaHElaHqW 357 (926)
..++|||++|||
T Consensus 112 ~~~~aHElGH~l 123 (173)
T PF13574_consen 112 IDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehhhhHhhc
Confidence 457999999998
No 67
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=32.32 E-value=67 Score=27.98 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHcCCcch
Q 036603 750 ADIVELALREYKTATNMTEQFAALAAIVQKPGKI 783 (926)
Q Consensus 750 ~~~~~~~~~~~~~a~nmtd~~~al~~l~~~~~~~ 783 (926)
++..+++.+.+.+|+.|.||+-+|..+...++|.
T Consensus 38 ~~d~~~L~~L~~~a~rm~eRI~tLE~ILdae~P~ 71 (75)
T PF06667_consen 38 EEDEQRLQELYEQAERMEERIETLERILDAEHPN 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3456677788899999999999999999888876
No 68
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=32.10 E-value=8.9e+02 Score=28.40 Aligned_cols=86 Identities=21% Similarity=0.246 Sum_probs=51.7
Q ss_pred CcceEEEEEEEEECC-CeEEEEEEEEEEEeccCCCCcEEEE----c--------CCcEEEEEEEcCeEecccceEec--C
Q 036603 67 NYYFDTVDLKFSLGE-EKTIVSSKITVFPRVEGSSSPLVLD----G--------QDLKLVSIKVNGIELKEGDYHLD--S 131 (926)
Q Consensus 67 ~~~~~~~~L~~~l~~-~~~~v~g~i~i~~~~~~~~~~l~L~----~--------~~L~I~~v~i~G~~l~~~~y~~~--~ 131 (926)
+|.++.+++++++.+ ....|+.++++.+... -..+..+ . .+++..+|+.+|..-+...|+.. +
T Consensus 1 ~y~I~~~~v~~~v~~dG~~~V~E~ity~f~~~--~~giyr~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 78 (511)
T PF09972_consen 1 DYSIDSYDVDATVQEDGSLDVTETITYDFDGS--FHGIYRTIPLKGTGQLGDDKQSIKNFSVSDDGSSGKPGTYGIEETD 78 (511)
T ss_pred CccceeeEEEEEECCCCcEEEEEEEEEEeccC--CceEEEEeccCCCCCCCcccccceeEEEEeCCCcCCCcceEEEecC
Confidence 467888999999876 4789999999988643 2233332 1 23445556666611112234443 3
Q ss_pred CE--EEEEC----CCCCeEEEEEEEEEee
Q 036603 132 RH--LTLQS----PPNGAFTLEIVTEIYP 154 (926)
Q Consensus 132 ~~--L~I~l----~~~~~~~L~I~~~~~p 154 (926)
+. +.|.. ..+++.+++++|+.++
T Consensus 79 ~~~~~~i~~~~~~~~~~~~~~~~~Y~v~~ 107 (511)
T PF09972_consen 79 DGYEIRIGIYDPSKNGGTHTYTISYTVKN 107 (511)
T ss_pred CcceEEEEecCccccCCeEEEEEEEEEEC
Confidence 34 55544 2237889999998753
No 69
>PF10335 DUF294_C: Putative nucleotidyltransferase substrate binding domain; InterPro: IPR018821 This entry is found associated with presumed nucleotidyltransferase domains and seems to be distantly related to other helical substrate binding domains.
Probab=31.88 E-value=1.1e+02 Score=29.88 Aligned_cols=88 Identities=16% Similarity=0.249 Sum_probs=58.2
Q ss_pred HHHHHHhhcccCCCChHHHHHHHhcCCCCCCCCCcchhhhhhhccCCCcccccCCCchhHHHHHHHHHhhhcChhHHhhh
Q 036603 802 VNKWFALQAMSDIPGNVECVQRLLDHPAFDLRNPNKVYSLIGGFCGSPVNLHAKDGSGYKFLGEMVVQLDKINPQVASRM 881 (926)
Q Consensus 802 ~~kw~~~~a~~~~~~~~~~v~~l~~~~~f~~~~pn~~r~l~~~f~~n~~~fh~~~g~gy~~~~~~~~~~~~~np~~a~r~ 881 (926)
.-.|+|++++....+|++|+++|.....+ .|+..+++..+| .| ..+.++-. ++..++. .+=
T Consensus 49 ~~R~lAL~~gi~~~~T~eRl~~L~~~g~l---~~~~~~~l~~A~-----~~----l~~lRl~~-q~~~~~~------g~~ 109 (145)
T PF10335_consen 49 AARLLALRHGISETSTLERLEALAEAGVL---SPDDAEDLIEAF-----EF----LLGLRLRH-QLEQIER------GRP 109 (145)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCC---CHHHHHHHHHHH-----HH----HHHHHHHH-HHHHHhc------CCC
Confidence 36899999999999999999999987765 467778887776 12 22232221 2222211 111
Q ss_pred hhHhhhhhccCHHHHHHHHHHHHHHHh
Q 036603 882 VSAFSRWRRFDETRQNLAKAQLEMIMS 908 (926)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 908 (926)
.+.+-....+.+.-+..+|++|+.|..
T Consensus 110 ~~n~i~~~~Ls~~er~~Lk~al~~i~~ 136 (145)
T PF10335_consen 110 PDNYIDPDELSKLERRRLKEALRVIKR 136 (145)
T ss_pred CCCccCHHHCCHHHHHHHHHHHHHHHH
Confidence 233455667777778889999988754
No 70
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=31.24 E-value=4.7e+02 Score=32.02 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=56.4
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCC---ChhHHHHHHHHHH--cCCcch--HHHHHHHHHHhcCCchHHHHHHHHhhccc
Q 036603 740 ALAYLASLEDADIVELALREYKTAT---NMTEQFAALAAIV--QKPGKI--RDEVLDDFYGKWQHDYLVVNKWFALQAMS 812 (926)
Q Consensus 740 ~l~~l~~~~~~~~~~~~~~~~~~a~---nmtd~~~al~~l~--~~~~~~--~~~~l~~f~~~~~~~~l~~~kw~~~~a~~ 812 (926)
+|.-|.-.|.+.....+.. |-... +..-|++|+.||- ....++ ++.++.-|.+.-.+..+.+...+.+--+.
T Consensus 510 ~LkaLgN~g~~~~i~~l~~-~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~ 588 (618)
T PF01347_consen 510 YLKALGNLGHPESIPVLLP-YIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCN 588 (618)
T ss_dssp HHHHHHHHT-GGGHHHHHT-TSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT-
T ss_pred HHHHhhccCCchhhHHHHh-HhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Confidence 3443444466666555443 43333 6677889999888 333342 77788888888888889999999998888
Q ss_pred CCCChHHHHHHHhcCC
Q 036603 813 DIPGNVECVQRLLDHP 828 (926)
Q Consensus 813 ~~~~~~~~v~~l~~~~ 828 (926)
|....+.+|...+.+.
T Consensus 589 P~~~~l~~i~~~l~~E 604 (618)
T PF01347_consen 589 PSPSVLQRIAQSLWNE 604 (618)
T ss_dssp --HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHhhC
Confidence 9999999999988654
No 71
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=30.59 E-value=1.8e+02 Score=33.12 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=43.7
Q ss_pred HHHHHHhCCCCCCCcccEEEecCCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHH-HHH-----------
Q 036603 289 KWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEY-FHN----------- 356 (926)
Q Consensus 289 ~~~e~~fG~~YP~~k~~iV~vp~f~~gaMEn~Gli~~~~~~ll~~~~~~t~~~~~~i~~viaHEl-aHq----------- 356 (926)
++..+|+|.. . -.+.|...++...++|-..+-+..+.+..+ + ...+..++.||+ .|-
T Consensus 120 ~~~~~y~~~~-~-~~~~V~~sddl~a~A~v~~~~l~I~~~~~f------s---~~~l~~L~~HEigvH~lt~~Ng~~QPl 188 (349)
T PF08014_consen 120 ERLKKYFGKE-G-FEVKVELSDDLLARAMVSGDRLKINKNAMF------S---ERDLEALLHHEIGVHLLTTLNGRAQPL 188 (349)
T ss_pred HHHHHHhccc-C-ceEEEEEcCCcchhhcccCCeeEEcCCCCc------C---HHHHHHHHHHhhhhhhccccccccCCc
Confidence 3445566522 1 244555556666677755544444433221 2 335788999999 452
Q ss_pred -hhCCcccccCCCchhHHHHHHHHHHHHH
Q 036603 357 -WTGNRVTCRDWFQLSLKEGLTVFRDQEF 384 (926)
Q Consensus 357 -WfGn~Vt~~~w~dlWL~EGfAty~~~~~ 384 (926)
|++...-+.. =.-||||++.+...
T Consensus 189 ~~l~~Glp~~~----~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 189 KILSLGLPGYT----PTQEGLAVLSEYLS 213 (349)
T ss_pred HHhCCCCCCCC----CCchHHHHHHHHHh
Confidence 3332222211 23699999988653
No 72
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=30.47 E-value=1e+02 Score=27.05 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCCCCCcccEEEecCCCC--cccccccccccccccccc----CCCCCChHHHHHHHHHHHHHHHHHh
Q 036603 288 MKWDEDVFGLEYDLDLFNIVAVPDFNM--GAMENKSLNIFNSKLVLA----SPETASDADYAAILGVIGHEYFHNW 357 (926)
Q Consensus 288 l~~~e~~fG~~YP~~k~~iV~vp~f~~--gaMEn~Gli~~~~~~ll~----~~~~~t~~~~~~i~~viaHElaHqW 357 (926)
-.-+|..||. ++....+-.-+.-.. ..|--- ..+.+....+. +|+... -..+++||++|-|
T Consensus 7 r~~~e~~~G~--dl~~Vrvh~~~~a~~~~~~~~A~-A~T~G~~I~f~~g~~~~~s~~------~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 7 RSRLERAFGA--DLSDVRVHTGPAASRAAAALGAR-AFTVGNDIYFAPGKYNPDSPE------GRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHhCC--CccceEEEeCCchhhhhhccCCe-EEEECCEEEEcCCCcCCCCCC------cchhHhHHHHHHH
Confidence 4567999994 577776654322110 111111 12333333342 232221 2368999999965
No 73
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=30.28 E-value=1.8e+02 Score=24.91 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhcCcChHHHHHHHhcCCcceEEEEEE-eecCCcEEEEEE
Q 036603 445 GMDLYFKRHDGQAVTCEDFFAAMRDANDAEFANFLLWYSQAGTPRLKVTSS-YSAETRTYSLEF 507 (926)
Q Consensus 445 ~lr~Yl~~~~~~~~t~~Df~~~le~~sg~dL~~f~~W~~q~G~P~l~V~~~-~~~~~~~~~l~l 507 (926)
.+...++.+.++.++..|+.+.+.+. ..+|...||+.-.|... .+-.++.++|.+
T Consensus 18 ~l~~~~~~~~g~~l~~~~l~~~~~~l--------~~~y~~~GY~~s~v~~p~q~i~~G~l~i~V 73 (76)
T PF08479_consen 18 ELQAILAPYIGRCLTLADLQQLADAL--------TNYYREKGYITSRVYLPPQDISDGVLTIRV 73 (76)
T ss_dssp HHHHHHGGGTTSBB-HHHHHHHHHHH--------HHHHHHTT-TT-EEEEEEEEETTSEEEEEE
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHH--------HHHHHHcCceEEEEEeCCeecCCCEEEEEE
Confidence 45666777777888888877766533 38999999998877542 222445555544
No 74
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=29.77 E-value=32 Score=38.56 Aligned_cols=31 Identities=23% Similarity=0.116 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhCCcccccCCCchhHHHHHHHHHHHHHHHH
Q 036603 345 ILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSD 387 (926)
Q Consensus 345 i~~viaHElaHqWfGn~Vt~~~w~dlWL~EGfAty~~~~~~~~ 387 (926)
.-.+++||+|||= | ..+|.=|+|++......
T Consensus 196 ~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~ 226 (318)
T PF12725_consen 196 LPFTICHELAHQL-G-----------FASEDEANFIAYLACIN 226 (318)
T ss_pred ccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhc
Confidence 3468999999996 2 34688899988766543
No 75
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=29.73 E-value=1.8e+02 Score=28.71 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=22.7
Q ss_pred EEEEEccCCCh---hhHHHHHHHHHHHHHHHHHHhCC
Q 036603 264 SLRIWTPAQDL---PKTAHAMYSLKAAMKWDEDVFGL 297 (926)
Q Consensus 264 ~l~vy~~~~~~---~~~~~al~~~~~~l~~~e~~fG~ 297 (926)
++++|..+... .......+.+.+|++.+++..++
T Consensus 3 ~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l 39 (156)
T cd04279 3 PIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPL 39 (156)
T ss_pred CeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCe
Confidence 46777776542 23445567888999988887644
No 76
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=29.58 E-value=43 Score=33.08 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhhCC
Q 036603 342 YAAILGVIGHEYFHNWTGN 360 (926)
Q Consensus 342 ~~~i~~viaHElaHqWfGn 360 (926)
...+..+|.||++|.|...
T Consensus 57 ~~~~~~tL~HEm~H~~~~~ 75 (157)
T PF10263_consen 57 EEELIDTLLHEMAHAAAYV 75 (157)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4468899999999999743
No 77
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=27.26 E-value=1e+02 Score=26.51 Aligned_cols=48 Identities=8% Similarity=0.142 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCcC
Q 036603 426 GAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFFAAMRDANDAE 474 (926)
Q Consensus 426 Ga~vl~ML~~~lG~e~F~~~lr~Yl~~~~~~~~t~~Df~~~le~~sg~d 474 (926)
=+.++.+|...++.+.. .-|..+++.++-+-++-++|.+.|....|..
T Consensus 11 F~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~ 58 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGDQ 58 (70)
T ss_pred HHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 35788999999999886 4566667777888899999999999988843
No 78
>PLN03077 Protein ECB2; Provisional
Probab=26.37 E-value=3.2e+02 Score=34.99 Aligned_cols=145 Identities=11% Similarity=0.152 Sum_probs=74.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCChhHHH---HHHHHHHcCCcchHHHHHHHHH---HhcCCchHHHHHHHHhhccc
Q 036603 739 IALAYLASLEDADIVELALREYKTATNMTEQF---AALAAIVQKPGKIRDEVLDDFY---GKWQHDYLVVNKWFALQAMS 812 (926)
Q Consensus 739 ~~l~~l~~~~~~~~~~~~~~~~~~a~nmtd~~---~al~~l~~~~~~~~~~~l~~f~---~~~~~~~l~~~kw~~~~a~~ 812 (926)
.++.-++..|..+.+..+.++-.+....+|.. +.|++..+.. .-++++.-|. ++..-.|-+ .-|-.+...-
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g--~v~ea~~~f~~M~~~~gi~P~~-~~y~~lv~~l 635 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG--MVTQGLEYFHSMEEKYSITPNL-KHYACVVDLL 635 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC--hHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHH
Confidence 34444555554332222223333333334433 4455544433 2344444443 344444432 3333333333
Q ss_pred CCCChHHHHHHHhcCCCCCCCCCcchhhhhhhccCCCcccccCCCchhHHHHHHHHHhhhcChhHHhhhhhHhhhhhccC
Q 036603 813 DIPGNVECVQRLLDHPAFDLRNPNKVYSLIGGFCGSPVNLHAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFSRWRRFD 892 (926)
Q Consensus 813 ~~~~~~~~v~~l~~~~~f~~~~pn~~r~l~~~f~~n~~~fh~~~g~gy~~~~~~~~~~~~~np~~a~r~~~~~~~~~~~~ 892 (926)
...+-++...++++.-.+. -++.-.++|+++.. .|.....| +..++.+++++|-|+..-.-|+..+....|++
T Consensus 636 ~r~G~~~eA~~~~~~m~~~-pd~~~~~aLl~ac~-----~~~~~e~~-e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~ 708 (857)
T PLN03077 636 GRAGKLTEAYNFINKMPIT-PDPAVWGALLNACR-----IHRHVELG-ELAAQHIFELDPNSVGYYILLCNLYADAGKWD 708 (857)
T ss_pred HhCCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHH-----HcCChHHH-HHHHHHHHhhCCCCcchHHHHHHHHHHCCChH
Confidence 3444455556665543222 12344578888873 34433444 67899999999999987777776666555555
Q ss_pred H
Q 036603 893 E 893 (926)
Q Consensus 893 ~ 893 (926)
+
T Consensus 709 ~ 709 (857)
T PLN03077 709 E 709 (857)
T ss_pred H
Confidence 4
No 79
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=25.25 E-value=22 Score=42.17 Aligned_cols=59 Identities=25% Similarity=0.397 Sum_probs=36.7
Q ss_pred ccccccccc---ccCCCCCChHHHHHHHHHHHHHHHHHhhCCccccc---CCCchhHHHHHHHHH
Q 036603 322 LNIFNSKLV---LASPETASDADYAAILGVIGHEYFHNWTGNRVTCR---DWFQLSLKEGLTVFR 380 (926)
Q Consensus 322 li~~~~~~l---l~~~~~~t~~~~~~i~~viaHElaHqWfGn~Vt~~---~w~dlWL~EGfAty~ 380 (926)
.|+|....| +++++..+..++-.|-.||+|||.|.+=-+.-..+ .-.+-|.+|--+.|-
T Consensus 461 ~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgFDdqGakfD~~GnL~dWWT~eD~~aF~ 525 (654)
T COG3590 461 EIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFDDQGAKFDGDGNLNDWWTDEDAAAFK 525 (654)
T ss_pred eEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccccCCccccCCCCcHHhhcCHHHHHHHH
Confidence 455544332 45677777778888999999999998732222111 112237778777774
No 80
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=24.93 E-value=39 Score=34.69 Aligned_cols=14 Identities=29% Similarity=0.093 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHh
Q 036603 344 AILGVIGHEYFHNW 357 (926)
Q Consensus 344 ~i~~viaHElaHqW 357 (926)
....++|||++|+|
T Consensus 141 ~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 141 NGAITFAHEIGHNL 154 (196)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred ceehhhHHhHHHhc
Confidence 34579999999998
No 81
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=24.80 E-value=61 Score=23.78 Aligned_cols=22 Identities=18% Similarity=0.653 Sum_probs=19.9
Q ss_pred hhhhccCHHHHHHHHHHHHHHH
Q 036603 886 SRWRRFDETRQNLAKAQLEMIM 907 (926)
Q Consensus 886 ~~~~~~~~~~~~~~~~~l~~~~ 907 (926)
.+|.+||..|.+-.+.-+.||.
T Consensus 12 ~qWq~YD~qRE~YV~~L~~rl~ 33 (35)
T PF12180_consen 12 QQWQKYDQQREAYVRGLLARLK 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHh
Confidence 5899999999999999988874
No 82
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=24.64 E-value=1e+02 Score=31.89 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=25.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhhCCcccccC---CCchhHHHHHHHHH
Q 036603 334 PETASDADYAAILGVIGHEYFHNWTGNRVTCRD---WFQLSLKEGLTVFR 380 (926)
Q Consensus 334 ~~~~t~~~~~~i~~viaHElaHqWfGn~Vt~~~---w~dlWL~EGfAty~ 380 (926)
++......+-.+-.+|||||.|-.-...+..+. ..+.|-++....|.
T Consensus 25 ~~~p~~~~yg~lG~ilahel~hafd~~g~~~D~~g~~~~wWs~~~~~~~~ 74 (206)
T PF01431_consen 25 PNYPPALNYGGLGFILAHELMHAFDPEGINYDEDGNLRNWWSEESRSNFK 74 (206)
T ss_dssp TTS-HHHHHHTHHHHHHHHHHHCTSTTGGGB-TTS-BS--S-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhHhhcCcccccccccchhhHHHHH
Confidence 333344556677889999999987554444321 22335455555554
No 83
>PF07550 DUF1533: Protein of unknown function (DUF1533); InterPro: IPR011432 This domain is found duplicated in proteins of unknown function. The proteins typically also contain leucine-rich repeats.
Probab=24.33 E-value=1.2e+02 Score=25.35 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=27.5
Q ss_pred EEEEEEEcCeEe-----cccceEecCC-EEEEEC---CCCCeEEEEEEEE
Q 036603 111 KLVSIKVNGIEL-----KEGDYHLDSR-HLTLQS---PPNGAFTLEIVTE 151 (926)
Q Consensus 111 ~I~~v~i~G~~l-----~~~~y~~~~~-~L~I~l---~~~~~~~L~I~~~ 151 (926)
.|++|+|||... ....|..... .|.|.. ...+.++|.|.-.
T Consensus 7 ~I~~V~VNg~~y~~~~~~~~~y~~~~~~~l~i~~~~f~~~G~~~I~I~A~ 56 (65)
T PF07550_consen 7 AITSVTVNGKEYNKSLKGNDKYSISSKGSLKIKASAFNKDGENTIVIKAT 56 (65)
T ss_pred hCCEEEECCEEeeccccccccEEeccCCcEEEcHHHcCcCCceEEEEEeC
Confidence 578899999877 4456777433 377763 3556888888644
No 84
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=23.42 E-value=1.5e+02 Score=32.22 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhcChhHHhhhhhHhhhhhccCHHHHHHHHHHHHHHHhccCCCcc-HHHHHHhhh
Q 036603 862 FLGEMVVQLDKINPQVASRMVSAFSRWRRFDETRQNLAKAQLEMIMSANGLSEN-VFEIASKSL 924 (926)
Q Consensus 862 ~~~~~~~~~~~~np~~a~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ls~~-~~e~~~~~l 924 (926)
-.+..|..|+..||.--.-|-.+|..++.++..|-..++..|-.|...-+||.| -++-|-+.|
T Consensus 190 ~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~~~~l~~~~~~~~~~~~~~l 253 (258)
T cd07680 190 KYEKVLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAESSSYAHVYREL 253 (258)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchhHHHHHHHH
Confidence 346788999999999999999999999999999999999999999888888876 455555544
No 85
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=23.13 E-value=58 Score=29.32 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=24.1
Q ss_pred HHHhhCHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 036603 433 YKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFFA 465 (926)
Q Consensus 433 L~~~lG~e~F~~~lr~Yl~~~~~~~~t~~Df~~ 465 (926)
++.+||++.|.+..+.|+..|.-.+.+..++=.
T Consensus 55 ~~~llG~~~f~~la~~y~~~~p~~s~~l~~~g~ 87 (94)
T PF09836_consen 55 VRALLGEEFFDALARAYIRAHPSRSPDLNDYGE 87 (94)
T ss_dssp GGGGS-HHHHHHHHHHHHHSGGGG-S-GGGHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 467899999999999999999866666555433
No 86
>PF08278 DnaG_DnaB_bind: DNA primase DnaG DnaB-binding ; InterPro: IPR013173 Eubacterial DnaG primases interact with several factors to form the replisome. One of these factors is DnaB, a helicase. This domain has been demonstrated to be responsible for the interaction between DnaG and DnaB []. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003896 DNA primase activity, 0006269 DNA replication, synthesis of RNA primer; PDB: 2HAJ_A 1T3W_B.
Probab=22.06 E-value=1.2e+02 Score=28.78 Aligned_cols=55 Identities=24% Similarity=0.493 Sum_probs=34.5
Q ss_pred HHHHHhcCCCCCCCCCcchhhhhhhccCCCcccccCCCchhHHHHHHHHHhhhcChhHHhhhhhHhhhhh
Q 036603 820 CVQRLLDHPAFDLRNPNKVYSLIGGFCGSPVNLHAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFSRWR 889 (926)
Q Consensus 820 ~v~~l~~~~~f~~~~pn~~r~l~~~f~~n~~~fh~~~g~gy~~~~~~~~~~~~~np~~a~r~~~~~~~~~ 889 (926)
.++-|++||. |.+... +...+...++.|++++.+.|..+.. ||++.+-. -+.+|+
T Consensus 5 ~i~lLLq~P~-----------La~~~~-d~~~l~~~~~~~~~lL~~li~~~~~-~p~~~~a~--lle~~r 59 (127)
T PF08278_consen 5 AIALLLQHPQ-----------LAQRVP-DLLALEDFQDPGIRLLRELIELIRE-NPNISTAQ--LLEYWR 59 (127)
T ss_dssp HHHHHHH-GG-----------GGGGS----TTSHCCCSTTHHHHHHHHHHHHH-STT--HHH--HHHTTT
T ss_pred HHHHHHHCHH-----------HHhhCC-CccchhhccChHHHHHHHHHHHHcc-CCCCCHHH--HHHHHh
Confidence 3566677776 233332 4556777789999999999999998 99755433 444454
No 87
>PRK09687 putative lyase; Provisional
Probab=22.05 E-value=1.1e+03 Score=25.92 Aligned_cols=27 Identities=37% Similarity=0.580 Sum_probs=21.5
Q ss_pred CCCHHHHHhhHhcCCChhhHHHHHHHHH
Q 036603 600 DLSDSDLFFLLANDSDEFNRWEAGQVLA 627 (926)
Q Consensus 600 ~~~~~~l~~ll~~d~D~f~r~~Ag~~l~ 627 (926)
.++.+++..++. |.|.+-||.|...|.
T Consensus 22 ~~~~~~L~~~L~-d~d~~vR~~A~~aL~ 48 (280)
T PRK09687 22 KLNDDELFRLLD-DHNSLKRISSIRVLQ 48 (280)
T ss_pred hccHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 678889998985 579999999887643
No 88
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=21.15 E-value=1.6e+02 Score=29.98 Aligned_cols=13 Identities=31% Similarity=0.266 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHh
Q 036603 345 ILGVIGHEYFHNW 357 (926)
Q Consensus 345 i~~viaHElaHqW 357 (926)
...++|||++|+.
T Consensus 133 ~~~~~aHElGH~l 145 (192)
T cd04267 133 TALTMAHELGHNL 145 (192)
T ss_pred ehhhhhhhHHhhc
Confidence 4568999999976
No 89
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=20.91 E-value=4.1e+02 Score=22.60 Aligned_cols=57 Identities=14% Similarity=0.043 Sum_probs=39.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhCCChhHHHHHHHHHHcCCcchHHHHHHHHHH
Q 036603 736 LKNIALAYLASLEDADIVELALREYKTATNMTEQFAALAAIVQKPGKIRDEVLDDFYG 793 (926)
Q Consensus 736 l~n~~l~~l~~~~~~~~~~~~~~~~~~a~nmtd~~~al~~l~~~~~~~~~~~l~~f~~ 793 (926)
+|-.++..|+..+++++...+.+.+ +..|-.-|..|..+|.+.+.++....|.+..+
T Consensus 16 vr~~a~~~L~~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~ 72 (88)
T PF13646_consen 16 VRAEAARALGELGDPEAIPALIELL-KDEDPMVRRAAARALGRIGDPEAIPALIKLLQ 72 (88)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 3445666777778888888888776 45566778899999998876655555555443
No 90
>PF03442 CBM_X2: Carbohydrate binding domain X2; InterPro: IPR005102 The structure of this module is known [] and consists of an Ig-like fold. The function of this domain is unknown, but might be involved in mediating interaction with carbohydrates.; PDB: 1EHX_A.
Probab=20.42 E-value=73 Score=28.30 Aligned_cols=49 Identities=31% Similarity=0.392 Sum_probs=24.9
Q ss_pred EEEEcCCcEEEEEEEcCeEecc-cceEecCCEEEEEC-----CCCCeEEEEEEEE
Q 036603 103 LVLDGQDLKLVSIKVNGIELKE-GDYHLDSRHLTLQS-----PPNGAFTLEIVTE 151 (926)
Q Consensus 103 l~L~~~~L~I~~v~i~G~~l~~-~~y~~~~~~L~I~l-----~~~~~~~L~I~~~ 151 (926)
+.|..++-.+.+|+.+|..+.. .+|.+.++.++|.- .+++..+|.+.|+
T Consensus 21 vtl~~ngntl~~I~~g~~~L~~g~DYtvsg~~vtik~syL~~l~~g~~~Ltf~Fs 75 (84)
T PF03442_consen 21 VTLTLNGNTLTSIKNGGTTLVEGTDYTVSGNTVTIKKSYLATLPGGNATLTFDFS 75 (84)
T ss_dssp EEEE-TT-----BGG-----G-GGGEEEETTEEEE-HHHHHHS-SEEEEEEB--S
T ss_pred EEEEeCCcEEEEEEeeeecccCCCCEEEeCCEEEEeHHHHhhCcCCcEEEEEEEC
Confidence 4445556677888777777753 47999999999974 5667888888775
No 91
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=20.24 E-value=67 Score=35.69 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhCCc
Q 036603 343 AAILGVIGHEYFHNWTGNR 361 (926)
Q Consensus 343 ~~i~~viaHElaHqWfGn~ 361 (926)
..+..|++||+|||=-++.
T Consensus 273 dglAtvLgHE~aHaVarH~ 291 (424)
T KOG2661|consen 273 DGLATVLGHEIAHAVARHA 291 (424)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578999999999976643
Done!