BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036604
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
Arabidopsis Thaliana Superman Protein
Length = 39
Score = 34.3 bits (77), Expect = 0.071, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 162 KVHECSICGAEFSSGQALGGHMRRH 186
+ + CS C EF S QALGGHM H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 83 YQCKTCNRCFPSFQALGGHRASH 105
Y C C R F S QALGGH H
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVH 29
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 78 TGLYVYQCKTCNRCFPSFQALGGHRASHKKPKVINNNIEASKKAFVLMDE 127
TG+ +QCKTC R F L H +H K + + +K F DE
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDE 111
>pdb|3CF4|A Chain A, Structure Of The Codh Component Of The M. Barkeri Acds
Complex
Length = 807
Score = 30.8 bits (68), Expect = 0.73, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 130 DRFSNMSTTLSLQMANNRDAANLCARTNNK--ANKVHECSICGA 171
D+ + L+++MA RDAA + A ++ N V +C+ CGA
Sbjct: 379 DKLGELCVRLTMEMAPIRDAAGITALPTDEELVNMVAKCADCGA 422
>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase
Complex With Nadh
pdb|1E3L|B Chain B, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase
Complex With Nadh
Length = 376
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 80 LYVYQCKTCNRCFPSFQALGGHRASHKKPKVINNNIEASKKAFVLMDEEDDRFSNMSTTL 139
+ QCK C C L G + K P + +E F F +S
Sbjct: 92 FFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVS--- 148
Query: 140 SLQMANNRDAANLCARTNNKANKVHECSICGAEFSSG 176
S ANL AR +++AN C I G FSSG
Sbjct: 149 SFSQYTVVSEANL-ARVDDEANLERVCLI-GCGFSSG 183
>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
pdb|1E3E|B Chain B, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
pdb|1E3I|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh And
Inhibitor
pdb|1E3I|B Chain B, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh And
Inhibitor
Length = 376
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 80 LYVYQCKTCNRCFPSFQALGGHRASHKKPKVINNNIEASKKAFVLMDEEDDRFSNMSTTL 139
+ QCK C C L G + K P + +E F F +S
Sbjct: 92 FFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVS--- 148
Query: 140 SLQMANNRDAANLCARTNNKANKVHECSICGAEFSSG 176
S ANL AR +++AN C I G FSSG
Sbjct: 149 SFSQYTVVSEANL-ARVDDEANLERVCLI-GCGFSSG 183
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 162 KVHECSICGAEFSSGQALGGHMRRH 186
K +ECS+CG FS Q+L H R H
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIH 35
>pdb|1NFI|A Chain A, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|C Chain C, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 301
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 83 YQCKTC-NRCFPSFQALGGHRASHKK-PKVINNNIEASKKAF-VLMDEEDDRFSNMSTTL 139
Y+ + C +RC SFQ LG + + I+ I+ + F V ++E+ + + L
Sbjct: 81 YEAELCPDRCIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFQVPIEEQRGDYDLNAVRL 140
Query: 140 SLQMANNRDAANLCART---------NNKANKVHECSICGAEFSSGQALGG 181
Q+ RD + R +N+A E IC +SG LGG
Sbjct: 141 CFQVTV-RDPSGRPLRLPPVLPHPIFDNRAPNTAELKICRVNRNSGSCLGG 190
>pdb|2O61|A Chain A, Crystal Structure Of Nfkb, Irf7, Irf3 Bound To The
Interferon-B Enhancer
Length = 540
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 83 YQCKTC-NRCFPSFQALGGHRASHKK-PKVINNNIEASKKAF-VLMDEEDDRFSNMSTTL 139
Y+ + C +RC SFQ LG + + I+ I+ + F V ++E+ + + L
Sbjct: 83 YEAELCPDRCIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFQVPIEEQRGDYDLNAVRL 142
Query: 140 SLQMANNRDAANLCART---------NNKANKVHECSICGAEFSSGQALGG 181
Q+ RD + R +N+A E IC +SG LGG
Sbjct: 143 CFQV-TVRDPSGRPLRLPPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGG 192
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 8.7, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 162 KVHECSICGAEFSSGQALGGHMRRH 186
K ++C +CG EFS L H R H
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVH 35
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 27.3 bits (59), Expect = 9.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 162 KVHECSICGAEFSSGQALGGHMRRH 186
K + C ICG F Q L H+R H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.128 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,788,325
Number of Sequences: 62578
Number of extensions: 179133
Number of successful extensions: 624
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 38
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)