BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036605
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZQL4|WDR43_MOUSE WD repeat-containing protein 43 OS=Mus musculus GN=Wdr43 PE=1 SV=2
Length = 677
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 28/261 (10%)
Query: 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACG---------FVGKKRRKE-RGTL----LLA 46
+W T + L E+ P + +CLA KKR+ E GT LLA
Sbjct: 40 VWETANNRLHQEY-VPSAHLSGTCTCLAWAPARLQAKESHQRKKRKSEVTGTKDQADLLA 98
Query: 47 LGTSNGDILAVDVLTGEMKWKST-GRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMG 105
LGT+ G IL + GE+ K T G H + + + + L+ + E ++
Sbjct: 99 LGTAVGSILLYSTVRGELHSKLTSGGHENRVNCIQWHQDNDCLYSCSDDKYIVEWSTQTC 158
Query: 106 EVIREFKASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGP---LQYVS 162
+V ++K +SS + K+ A +++ LE E F+ P L++ +
Sbjct: 159 KVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLRFTT 218
Query: 163 -------ASDGAK--IIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSP 213
SDG ++ ++ L VW+ +K + + ++ PV +D S
Sbjct: 219 IRPNESQPSDGITGLYFLSGAVHDRLLNVWQVRSENKEKSAVMSFTVTDEPVYVDLTLSE 278
Query: 214 NGEDGTVILAVAESGVAYSWD 234
N E+ + V G + ++
Sbjct: 279 NKEEPVKLAVVCRDGQVHLFE 299
>sp|A4YI28|SYL2_METS5 Leucine--tRNA ligase 2 OS=Metallosphaera sedula (strain ATCC 51363
/ DSM 5348) GN=leuS2 PE=3 SV=1
Length = 950
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 91 VGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSEV------------- 137
VG + +M+ E+GE + F S+ ++A L E IF + V
Sbjct: 195 VGMHDTKGDMEPEIGEYVVIFFESKMGALAAATLRPETIFGAVAVWVNPKATYTVAEIWG 254
Query: 138 -RILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGP 196
+++ E E LKF DV L+ VS SD KI+ K + + D T G
Sbjct: 255 KKVIVSEKAAEKLKFQTDVKVLEKVSGSDLLKIVAINPITGKEIPILPADFVDPTTATGV 314
Query: 197 ALSMR-HSPV-AIDCKNSPNGEDGTVILAVAESGVAYSWDL 235
+S+ H+P K + G + ++AV G A + DL
Sbjct: 315 VMSVPAHAPFDYFYLKKAKVGIEPIPVVAVEGQGDAPAKDL 355
>sp|Q6CVN2|JIP5_KLULA WD repeat-containing protein JIP5 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=JIP5 PE=3 SV=1
Length = 525
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 26/192 (13%)
Query: 63 EMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK---ASEKPIS 119
E+ WK T RH G + G++F G L+ +G + + + S G+V+++ +SEK
Sbjct: 114 ELLWK-TRRHKGSVRGMSFNNDGSKLYTIGIDNVLKKANSLTGKVMKKVTLPLSSEKNHY 172
Query: 120 SSAFLCEEKIFALASSEV--------RILSLENGEEVLKFSDDVGPL-QYVSASDGAKII 170
+ + F L E+ L L+N + + D + + Q+V G +
Sbjct: 173 TKLVTSKTHPFLLLGDELGNIHVLNNDTLQLQNTIKSIHNGDAINDIFQFV----GKSVY 228
Query: 171 ITAGYGEKHLQVWRCDISSKTVNKGPALSM---RHSPVAID------CKNSPNGEDGTVI 221
G+ L W S+++ PA + R V+ D C + N EDG ++
Sbjct: 229 KFISLGQTTLAYWDSRESNESDASIPADDLDAKRKVYVSDDQEDEMICGSFVNPEDGDIL 288
Query: 222 LAVAESGVAYSW 233
+ GV W
Sbjct: 289 VCGMGEGVLTVW 300
>sp|Q15061|WDR43_HUMAN WD repeat-containing protein 43 OS=Homo sapiens GN=WDR43 PE=1 SV=3
Length = 677
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 19/220 (8%)
Query: 34 KKRRKE-----RGTLLLALGTSNGDILAVDVLTGEMKWK-STGRHPGGLAGLAFAKKGRS 87
KKR+ E T LLALGT+ G IL + GE+ K +G H + + + +
Sbjct: 81 KKRKSEAVGMSNQTDLLALGTAVGSILLYSTVKGELHSKLISGGHDNRVNCIQWHQDSGC 140
Query: 88 LHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSEVRILSLENGEE 147
L+ + E + +V ++K +SS + K+ A +++ LE E
Sbjct: 141 LYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWVLETKEV 200
Query: 148 VLKFSDDVGPLQYVSAS-----------DGAK--IIITAGYGEKHLQVWRCDISSKTVNK 194
F+ P+ + + DG ++ ++ L VW+ +K +
Sbjct: 201 YRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDRLLNVWQVRSENKEKSA 260
Query: 195 GPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234
+ ++ PV ID S N E+ + V G + ++
Sbjct: 261 VMSFTVTDEPVYIDLTLSENKEEPVKLAVVCRDGQVHLFE 300
>sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans
GN=T10F2.4 PE=3 SV=2
Length = 492
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 72 HPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEK-PISSSAFLCEEKIF 130
H + +AF++ G L +G + ++ F EK PI+S +F
Sbjct: 379 HTAAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTFANEEKQPINSLSFDMTGTFL 438
Query: 131 ALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVW 183
+ +V++L +++ EV+ SD GP+ V + A+ ++T +K L+V+
Sbjct: 439 GIGGQKVQVLHVKSWSEVVSLSDHSGPVTGVRFGENARSLVTCSL-DKSLRVF 490
>sp|Q2GMF6|JIP5_CHAGB WD repeat-containing protein JIP5 OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=JIP5 PE=3 SV=1
Length = 412
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 68 STGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEE 127
+T RH G LA++ G SL+ GT+ + E G V+ + + ++S C
Sbjct: 65 NTHRHKGSCRYLAYSHDGESLYSAGTDSVVKHFSPETGIVVSKIGLPPRNSATSTTDCPA 124
Query: 128 KIFALASSEVRILSLENG 145
I AL S + +L ++G
Sbjct: 125 IIHAL-SPQTLLLGTDSG 141
>sp|Q60282|Y3523_METJA Uncharacterized protein MJECL23 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJECL23 PE=4 SV=1
Length = 827
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 17/181 (9%)
Query: 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSE 103
++ LG G ILA+D+ G M W+ + + L+ + + G + + +
Sbjct: 601 IVVLGCKKGYILALDINAGNMLWEFKAKSGKSIRNLSIK---NDILLFGCDNYLYALDID 657
Query: 104 MGEVIREFKASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSA 163
G + FKA E + S + + + V +L + GE++ +F VG + +S
Sbjct: 658 TGRELWRFKA-EGEVKSLSIKKDNVLLGCRGGYVYLLDINTGEKMERFK-VVGSVLRLSI 715
Query: 164 SDGAKIIITAGYGEKHLQVWRCDISS-------KTVNKGPALSMRHSPVAIDCKNSPNGE 216
D I+ G V+ DI++ KT LS+++ V + C N
Sbjct: 716 KDDIVIL-----GCNRECVYALDINAGENLWAFKTDGDVNGLSIKNDAVLLGCDNYLYAL 770
Query: 217 D 217
D
Sbjct: 771 D 771
>sp|A7EGU0|JIP5_SCLS1 WD repeat-containing protein jip5 OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=jip5 PE=3 SV=1
Length = 433
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 51 NGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIRE 110
NG +L+ T E +W+ T RH G L F+ G L+ GT+ + S G+VI +
Sbjct: 56 NGSVLSTGTSTIETEWR-TRRHKGSCRTLGFSGDGGVLYSAGTDSLLKAAASATGQVISK 114
Query: 111 FK 112
+
Sbjct: 115 IR 116
>sp|Q5ZIV9|ADSV_CHICK Adseverin OS=Gallus gallus GN=SCIN PE=2 SV=2
Length = 717
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Query: 176 GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESG-VAYSWD 234
G +Q+WR + S + PV + G D +IL G + Y+W
Sbjct: 394 GSGKVQIWRVESSGRV------------PVEPETYGQFYGGDCYIILYTYPKGQIIYTWQ 441
Query: 235 LKTVSQDEKTNPAKITVKLKKADADQQNSVNVKKSR 270
++DE T A +TV+L ++ DQ + V + +
Sbjct: 442 GACATKDELTASAFLTVQLDRSLNDQAVQIRVSQGK 477
>sp|A6NCM1|IQCAL_HUMAN Putative IQ and AAA domain-containing protein 1-like OS=Homo
sapiens GN=IQCA1P1 PE=5 SV=2
Length = 817
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 235 LKTVSQDEKTNPAKITVKLKKADADQQNSVNVKKSRTSIIAARLNDLE-ADGQKTITGLH 293
L V QD K PA + V + K +Q++ + R I+A L+ LE QK+ TG+H
Sbjct: 102 LDRVLQDFKLTPADLEVPIPKYFLLEQSTTV--RERGLILAEILSRLEPVSSQKSFTGMH 159
Query: 294 DLESEAATASAQNEKKSKKRA 314
E+ A+ ++ + RA
Sbjct: 160 RTEAIILVQKAERARQGRLRA 180
>sp|A6ZX45|JIP5_YEAS7 WD repeat-containing protein JIP5 OS=Saccharomyces cerevisiae
(strain YJM789) GN=JIP5 PE=3 SV=2
Length = 492
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 66 WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIRE------FKASEKPIS 119
WK T RH G + + F KG ++ VG++ + + + G+V+++ F + EK
Sbjct: 123 WK-TKRHKGSVRAMCFDSKGDNIFSVGSDNVLKKANTMTGKVVKKVNLSSLFNSEEKKND 181
Query: 120 SSAFLCEEKI--FALASSE---VRI-----LSLENGEEVLKFSDDVGPLQYVSASDGAKI 169
LC + F L E + + L+L N + F D + + + K
Sbjct: 182 KFTKLCASQTHPFILIGDESGNIHVINSENLALSNSIRSIHFGDSINDIFHFDKRSAYKF 241
Query: 170 I 170
I
Sbjct: 242 I 242
>sp|Q06214|JIP5_YEAST WD repeat-containing protein JIP5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=JIP5 PE=1 SV=2
Length = 492
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 66 WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIRE------FKASEKPIS 119
WK T RH G + + F KG ++ VG++ + + + G+V+++ F + EK
Sbjct: 123 WK-TKRHKGSVRAMCFDSKGDNIFSVGSDNVLKKANTMTGKVVKKVNLSSLFNSEEKKND 181
Query: 120 SSAFLCEEKI--FALASSE---VRI-----LSLENGEEVLKFSDDVGPLQYVSASDGAKI 169
LC + F L E + + L+L N + F D + + + K
Sbjct: 182 KFTKLCASQTHPFILIGDESGNIHVINSENLALSNSIRSIHFGDSINDIFHFDKRSAYKF 241
Query: 170 I 170
I
Sbjct: 242 I 242
>sp|Q8N9V3|WSDU1_HUMAN WD repeat, SAM and U-box domain-containing protein 1 OS=Homo
sapiens GN=WDSUB1 PE=1 SV=3
Length = 476
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 114/271 (42%), Gaps = 56/271 (20%)
Query: 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL 60
+W+T +G +LA +QP G PV C F + LA G ++G ++ +
Sbjct: 80 LWNTENGQMLAVMEQPSGSPV-----RVCQF-------SPDSTCLASGAADGTVVLWNAQ 127
Query: 61 TGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN------------GMASEMKSEMGEVI 108
+ ++ ++ G LA AF+ G S V G++ SE ++G
Sbjct: 128 SYKL-YRCGSVKDGSLAACAFSPNG-SFFVTGSSCGDLTVWDDKMRCPHSEKAHDLGITC 185
Query: 109 REFKASEKPISSS----AFL--------CEEKIFALASSEVRILSLENGEEVLKFSDDVG 156
+F S +P+S F C+ KI+ ++ + + L+ + S
Sbjct: 186 CDF--SSQPVSDGEQGLQFFRLASCGQDCQVKIWIVSFTHILGFELKYKSTL---SGHCA 240
Query: 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGE 216
P+ + S ++++ +G +K + V+ + T N L+ +H+ C +PN
Sbjct: 241 PVLACAFSHDGQMLV-SGSVDKSVIVY----DTNTENILHTLT-QHTRYVTTCAFAPN-- 292
Query: 217 DGTVILAVA---ESGVAYSWDLKTVSQDEKT 244
T++LA ++ + +DL+T+ Q +T
Sbjct: 293 --TLLLATGSMDKTVNIWQFDLETLCQARRT 321
>sp|Q875D4|JIP5_PODAN WD repeat-containing protein JIP5 OS=Podospora anserina (strain S /
ATCC MYA-4624 / DSM 980 / FGSC 10383) GN=JIP5 PE=3 SV=1
Length = 413
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 68 STGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEE 127
ST RH G LA++ G +++ GT+ + E G VI + + ++S C
Sbjct: 68 STRRHKGSCRHLAYSHDGSAMYSAGTDSVVKHFSPETGNVISKIGLPPRNSATSTTDC-P 126
Query: 128 KIFALASSEVRILSLENG 145
I + S + +L ++G
Sbjct: 127 AILHVLSPQTLLLGTDSG 144
>sp|Q6C2S3|JIP5_YARLI WD repeat-containing protein JIP5 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=JIP5 PE=3 SV=1
Length = 356
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 63 EMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSA 122
E+ W +T RH G L +++ G S++ VG++G+ S+ G+V R P + S
Sbjct: 59 EVVW-TTKRHKGSCRALIYSEDGSSVYSVGSDGVIKRADSQSGKV-RAKNTESLPSTPSC 116
Query: 123 FLCEEKIFALASSEVRILSLE 143
+ E A+ + I++ +
Sbjct: 117 IVRSEAYVAVGCEDGSIVAFD 137
>sp|Q9D994|WDR38_MOUSE WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1
Length = 303
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 70 GRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKI 129
G+H G + AF+ GR+L +G ++ G ++ P+ S F + ++
Sbjct: 23 GQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRL 82
Query: 130 FALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVW 183
A +SS+ +R+ + + + ++ VS S +K + + G+ +K VW
Sbjct: 83 IASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGW-DKRAIVW 137
>sp|Q06151|DCPS_YEAST m7GpppX diphosphatase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=DCS1 PE=1 SV=1
Length = 350
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 194 KGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNPA 247
+ P+ R +PV +C+N + +G L S Y W L + QD ++NP
Sbjct: 57 RRPSQDGRSTPVLYNCENEYSCINGIQELKEITSNDIYYWGLSVIKQDMESNPT 110
>sp|Q5ZMC3|WSDU1_CHICK WD repeat, SAM and U-box domain-containing protein 1 OS=Gallus
gallus GN=WDSUB1 PE=2 SV=2
Length = 476
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL 60
IW T+DG +LA +QP G PV + R + L G ++G ++ +V
Sbjct: 80 IWDTSDGRMLAVLEQPTGSPV------------RVCRFSPESTYLVSGAADGSVVLWNV- 126
Query: 61 TGEMKWKSTGR-HPGGLAGLAFAKKG 85
MK+ +G G L AF+ G
Sbjct: 127 -HSMKFYRSGNVKDGSLVACAFSPGG 151
>sp|O45487|EMAL_CAEEL Echinoderm microtubule-associated protein-like elp-1
OS=Caenorhabditis elegans GN=elp-1 PE=2 SV=1
Length = 891
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 18/102 (17%)
Query: 48 GTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEV 107
G SNG I D T + ++ HPGG+ L AK G+ L G + M SE ++ ++
Sbjct: 518 GDSNGTISIWDPRTCKTTKQAHSVHPGGVYSLTLAKSGKILS-GGKDRMVSEW--DLQDL 574
Query: 108 IREFKASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVL 149
+R + E P +EK F R++ L+NG E++
Sbjct: 575 VRTRRPIELP--------DEKGFP------RVI-LQNGSELI 601
>sp|P12293|DHM1_PARDE Methanol dehydrogenase [cytochrome c] subunit 1 OS=Paracoccus
denitrificans GN=moxF PE=1 SV=1
Length = 631
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Query: 17 DGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGL 76
D EP + FVG G A G I A D ++GEMKW+ R +
Sbjct: 449 DWEPFMLPYRAGQFFVGATLTMYPGPKATAERAGAGQIKAYDAISGEMKWEKMERF--SV 506
Query: 77 AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK 112
G A G V +G S+ G+++ +FK
Sbjct: 507 WGGTMATAGGLTFYVTLDGFIKARDSDTGDLLWKFK 542
>sp|Q0V786|JIP5_PHANO WD repeat-containing protein JIP5 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=JIP5 PE=3 SV=1
Length = 425
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 25/153 (16%)
Query: 6 DGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNG----DILAVDVLT 61
D L A+ P+ EP+V+ LA G V R L G S+ + LA +
Sbjct: 11 DSDLFAQAIHPE-EPIVAVG-LASGHVQTYR--------LPPGASDDSDPDEALAAEKGF 60
Query: 62 GEM--KWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKAS----- 114
G + WK T RH G LAF+ G SL+ GT+G+ + G V +F
Sbjct: 61 GHIATTWK-TRRHKGSCRTLAFSVDGSSLYSAGTDGIVKVADTTTGRVTAKFAVPLDLAN 119
Query: 115 ---EKPISSSAFLCEEKIFALASSEVRILSLEN 144
+ P A + I SS + I + +
Sbjct: 120 GGIDAPTLVHALSPQSLILGTDSSALHIYDIRD 152
>sp|Q9I9H8|APAF_DANRE Apoptotic protease-activating factor 1 OS=Danio rerio GN=apaf1 PE=2
SV=1
Length = 1261
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 72 HPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFA 131
H G + F+K G + G + KS GE + E +A E+ + AF +++ A
Sbjct: 616 HQGAVYYACFSKDGSKIASCGASKALRVFKSTSGEKLLELQAHEEDVLCCAFSPDDRHIA 675
Query: 132 LASSE--VRILSLENGEEVLKF 151
+S+ V++ ++E G + +F
Sbjct: 676 TCASDRKVKLWNVERGVLIREF 697
>sp|Q6G0Q6|ARGJ_BARQU Arginine biosynthesis bifunctional protein ArgJ OS=Bartonella
quintana (strain Toulouse) GN=argJ PE=3 SV=1
Length = 412
Score = 32.0 bits (71), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 170 IITAGYGEKHL-QVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGED---GTVILAVA 225
++ G G +HL +V +++ K ALS+ +SP+ K + GED G V++AV
Sbjct: 279 VVCDGEGARHLIEVCVTGATTENAAKTIALSIANSPLV---KTAIAGEDANWGRVVMAVG 335
Query: 226 ESGVAYSWDLKTV 238
++GV DL T+
Sbjct: 336 KAGVEVDRDLLTI 348
>sp|Q9H6Y2|WDR55_HUMAN WD repeat-containing protein 55 OS=Homo sapiens GN=WDR55 PE=1 SV=2
Length = 383
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 44 LLALGTSNGDIL--AVDVLTGEMK--WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASE 99
LLA G +GD+ + GE K W S+G H +AF++ G+ L V +
Sbjct: 52 LLAAGDVDGDVFVFSYSCQEGETKELW-SSGHHLKACRAVAFSEDGQKLITVSKDKAIHV 110
Query: 100 MKSEMGEVIREF-KASEKPISSSAFLCEEKIFA 131
+ E G++ R KA PI +S L +E + A
Sbjct: 111 LDVEQGQLERRVSKAHGAPI-NSLLLVDENVLA 142
>sp|Q2UBM4|JIP5_ASPOR WD repeat-containing protein jip5 OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=jip5 PE=3 SV=1
Length = 417
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 66 WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLC 125
W+ T RH G L F G SL+ GT+G+ K+E G V E K + P +
Sbjct: 68 WR-TRRHKGSCRCLTFGIDGESLYSAGTDGLVKAAKAETGVV--ENKIAIPPEKDGSVDA 124
Query: 126 EEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSA 163
I AL+ + L L L D P VSA
Sbjct: 125 PTVIHALSP---QTLLLATDSSALHLYDLRLPFSRVSA 159
>sp|F5ZAY7|BAMB_ALTSS Outer membrane protein assembly factor BamB OS=Alteromonas sp.
(strain SN2) GN=bamB PE=3 SV=2
Length = 418
Score = 31.6 bits (70), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN-GMASEMKS 102
LL +GT NG ++A+D TGE KW+++ PG + A +G + VV T G +
Sbjct: 142 LLFVGTENGVVMALDYETGETKWEAS--VPGEVLAAPSADEG--ILVVNTGAGTLFGFDT 197
Query: 103 EMGEVIREFKASEKPIS 119
GE + + P++
Sbjct: 198 RTGEQLWRHEGDTPPLT 214
>sp|Q5RE95|WDR5B_PONAB WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1
Length = 330
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 105 GEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLK--FSDDVGPLQY 160
G+ ++ A P+S+ F C + S + RI +G+ LK DD P+ +
Sbjct: 157 GKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQ-CLKTLVDDDNPPVSF 215
Query: 161 VSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTV 220
V S K I+TA + L++W D S K ++ I S G G
Sbjct: 216 VKFSPNGKYILTATL-DNTLKLW--DYSRGRCLK-TYTGHKNEKYCIFANFSVTG--GKW 269
Query: 221 ILAVAESGVAYSWDLKT 237
I++ +E + Y W+L+T
Sbjct: 270 IVSGSEDNLVYIWNLQT 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,793,215
Number of Sequences: 539616
Number of extensions: 5004101
Number of successful extensions: 13469
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 13431
Number of HSP's gapped (non-prelim): 79
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)