Query 036607
Match_columns 436
No_of_seqs 303 out of 936
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:45:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 3.4E-56 7.4E-61 436.6 25.7 272 115-427 46-341 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 2.9E-53 6.2E-58 400.5 14.0 191 152-352 1-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 1.2E-48 2.6E-53 366.5 21.4 171 168-355 10-189 (190)
4 PF04431 Pec_lyase_N: Pectate 99.7 1.4E-18 3E-23 133.5 4.8 52 24-75 1-56 (56)
5 TIGR03805 beta_helix_1 paralle 98.9 3.6E-07 7.7E-12 92.5 22.8 239 144-398 1-286 (314)
6 PF14592 Chondroitinas_B: Chon 98.3 6.9E-06 1.5E-10 86.2 13.8 165 143-313 6-214 (425)
7 PF13229 Beta_helix: Right han 98.1 5.5E-05 1.2E-09 65.8 11.8 133 192-356 2-138 (158)
8 PLN02218 polygalacturonase ADP 98.0 0.00013 2.7E-09 77.3 16.1 137 191-352 216-356 (431)
9 PLN02188 polygalacturonase/gly 97.9 0.00037 8E-09 73.3 16.1 108 190-318 178-286 (404)
10 PLN03003 Probable polygalactur 97.9 0.00038 8.3E-09 74.1 16.2 121 192-333 163-287 (456)
11 PLN02155 polygalacturonase 97.9 0.00033 7.1E-09 73.4 15.4 124 190-334 168-296 (394)
12 PLN02793 Probable polygalactur 97.8 0.00053 1.2E-08 72.9 16.4 108 190-318 200-308 (443)
13 PLN03010 polygalacturonase 97.8 0.0011 2.4E-08 69.9 17.8 135 194-353 184-322 (409)
14 PF00295 Glyco_hydro_28: Glyco 97.7 0.00038 8.2E-09 70.8 12.8 134 150-318 89-223 (326)
15 PF13229 Beta_helix: Right han 97.7 0.00057 1.2E-08 59.3 11.4 131 190-352 23-158 (158)
16 PLN02218 polygalacturonase ADP 97.5 0.0054 1.2E-07 65.1 18.6 170 152-358 146-348 (431)
17 TIGR03805 beta_helix_1 paralle 97.5 0.0038 8.3E-08 63.4 16.5 160 174-338 63-248 (314)
18 PF05048 NosD: Periplasmic cop 97.5 0.0077 1.7E-07 57.6 17.6 63 235-307 80-142 (236)
19 PF12708 Pectate_lyase_3: Pect 97.5 0.0023 4.9E-08 59.4 12.8 40 144-184 21-63 (225)
20 TIGR03808 RR_plus_rpt_1 twin-a 97.3 0.012 2.7E-07 62.5 18.0 115 143-277 56-176 (455)
21 TIGR03808 RR_plus_rpt_1 twin-a 97.2 0.0074 1.6E-07 64.2 15.0 158 175-354 121-332 (455)
22 PLN02155 polygalacturonase 97.2 0.014 2.9E-07 61.5 16.1 141 154-331 107-268 (394)
23 PF05048 NosD: Periplasmic cop 97.1 0.0075 1.6E-07 57.7 12.3 132 190-355 35-168 (236)
24 PLN03003 Probable polygalactur 97.0 0.0093 2E-07 63.8 13.4 142 153-331 104-261 (456)
25 PLN03010 polygalacturonase 97.0 0.02 4.3E-07 60.5 15.7 138 192-358 159-313 (409)
26 PF01696 Adeno_E1B_55K: Adenov 97.0 0.018 3.8E-07 60.3 14.5 175 144-357 57-242 (386)
27 PF00295 Glyco_hydro_28: Glyco 97.0 0.0076 1.7E-07 61.3 11.5 108 170-307 62-184 (326)
28 PLN02793 Probable polygalactur 96.8 0.016 3.5E-07 61.7 12.8 109 169-307 144-269 (443)
29 PLN02480 Probable pectinestera 96.7 0.032 7E-07 57.7 14.0 119 143-279 62-198 (343)
30 PLN02197 pectinesterase 96.6 0.035 7.5E-07 61.2 13.7 151 96-278 244-424 (588)
31 PF07602 DUF1565: Protein of u 96.6 0.071 1.5E-06 52.9 14.6 187 142-353 16-240 (246)
32 PLN02188 polygalacturonase/gly 96.3 0.053 1.2E-06 57.2 12.8 168 154-358 114-313 (404)
33 COG5434 PGU1 Endopygalactoruna 96.0 0.084 1.8E-06 57.7 12.8 103 192-317 263-375 (542)
34 PLN02176 putative pectinestera 95.7 0.29 6.4E-06 50.7 14.5 120 143-279 53-189 (340)
35 smart00656 Amb_all Amb_all dom 95.6 0.57 1.2E-05 44.4 15.0 135 174-331 45-188 (190)
36 PLN02682 pectinesterase family 95.1 0.38 8.3E-06 50.4 13.4 119 143-279 84-229 (369)
37 PLN02708 Probable pectinestera 95.1 0.34 7.3E-06 53.3 13.4 98 143-260 255-375 (553)
38 PLN02170 probable pectinestera 94.9 0.34 7.4E-06 52.9 12.6 114 143-278 239-373 (529)
39 COG3420 NosD Nitrous oxidase a 94.8 1.4 2.9E-05 46.0 16.0 93 170-278 100-192 (408)
40 PLN02506 putative pectinestera 94.7 0.74 1.6E-05 50.5 14.6 114 143-278 246-379 (537)
41 PLN02416 probable pectinestera 94.6 0.39 8.4E-06 52.7 12.2 113 143-278 244-377 (541)
42 PLN02304 probable pectinestera 94.3 0.89 1.9E-05 47.9 13.6 128 143-288 89-236 (379)
43 PLN02432 putative pectinestera 94.1 0.77 1.7E-05 46.7 12.5 121 143-288 25-162 (293)
44 PLN02488 probable pectinestera 94.0 0.54 1.2E-05 51.1 11.8 100 143-261 211-330 (509)
45 PLN03043 Probable pectinestera 94.0 0.83 1.8E-05 50.1 13.2 98 143-260 237-358 (538)
46 PLN02665 pectinesterase family 93.9 0.97 2.1E-05 47.4 12.9 129 143-290 82-230 (366)
47 PLN02301 pectinesterase/pectin 93.9 0.52 1.1E-05 51.8 11.4 100 143-261 250-369 (548)
48 PLN02634 probable pectinestera 93.8 1.2 2.5E-05 46.7 13.3 119 143-279 70-215 (359)
49 PLN02773 pectinesterase 93.6 1.3 2.9E-05 45.5 13.1 114 143-279 19-163 (317)
50 PLN02933 Probable pectinestera 93.5 1.1 2.4E-05 49.1 13.1 114 143-278 232-365 (530)
51 PLN02217 probable pectinestera 93.4 0.96 2.1E-05 50.8 12.7 145 143-307 264-450 (670)
52 PLN02916 pectinesterase family 93.4 1.2 2.6E-05 48.6 13.0 114 143-278 201-337 (502)
53 PLN02713 Probable pectinestera 93.4 1.2 2.5E-05 49.3 13.1 99 143-261 264-386 (566)
54 PLN02745 Putative pectinestera 93.3 1.1 2.4E-05 49.7 12.9 115 143-279 299-433 (596)
55 PLN02484 probable pectinestera 93.2 0.9 1.9E-05 50.4 12.0 101 143-261 286-406 (587)
56 PLN02995 Probable pectinestera 93.2 1.1 2.4E-05 49.2 12.4 115 143-279 237-373 (539)
57 PLN02201 probable pectinestera 92.9 1.3 2.8E-05 48.4 12.4 114 143-278 220-353 (520)
58 PF01095 Pectinesterase: Pecti 92.3 1.8 3.9E-05 44.0 11.8 124 142-288 13-156 (298)
59 PLN02313 Pectinesterase/pectin 92.2 1.5 3.2E-05 48.7 12.0 116 143-277 289-441 (587)
60 PLN02314 pectinesterase 92.0 1.7 3.8E-05 48.1 12.3 99 143-260 292-410 (586)
61 PLN02990 Probable pectinestera 92.0 2.1 4.5E-05 47.4 12.8 100 143-261 273-393 (572)
62 PLN02468 putative pectinestera 91.6 2 4.3E-05 47.5 12.0 99 143-261 272-391 (565)
63 PLN02497 probable pectinestera 91.0 4.2 9.2E-05 42.1 13.1 121 143-279 46-183 (331)
64 PF14592 Chondroitinas_B: Chon 90.7 1.6 3.5E-05 46.6 9.9 115 232-357 182-324 (425)
65 PLN02671 pectinesterase 90.3 5.2 0.00011 42.0 13.1 118 143-279 73-219 (359)
66 PF00544 Pec_lyase_C: Pectate 89.9 7.5 0.00016 37.1 13.0 117 189-329 74-200 (200)
67 PRK10531 acyl-CoA thioesterase 88.0 11 0.00024 40.3 13.8 122 143-279 96-283 (422)
68 COG5434 PGU1 Endopygalactoruna 87.9 2.5 5.3E-05 46.6 9.1 133 151-306 236-395 (542)
69 PF08480 Disaggr_assoc: Disagg 87.7 3 6.6E-05 40.0 8.4 88 267-356 2-110 (198)
70 COG3866 PelB Pectate lyase [Ca 85.7 6.9 0.00015 40.4 10.2 120 233-355 115-251 (345)
71 PF12708 Pectate_lyase_3: Pect 83.9 17 0.00036 33.5 11.4 48 201-263 94-141 (225)
72 COG3420 NosD Nitrous oxidase a 83.1 22 0.00048 37.3 12.6 133 168-321 45-197 (408)
73 PF08480 Disaggr_assoc: Disagg 73.7 63 0.0014 31.3 11.8 71 242-313 33-112 (198)
74 PF03211 Pectate_lyase: Pectat 56.7 22 0.00048 34.9 5.4 49 232-281 94-143 (215)
75 TIGR03804 para_beta_helix para 52.1 23 0.00051 25.1 3.6 40 236-277 1-40 (44)
76 PF07602 DUF1565: Protein of u 45.6 88 0.0019 31.3 7.7 90 172-284 95-193 (246)
77 TIGR03804 para_beta_helix para 42.7 58 0.0012 23.0 4.5 42 192-255 1-42 (44)
78 PRK10123 wcaM putative colanic 41.3 49 0.0011 34.3 5.2 50 197-257 266-315 (464)
79 PF12541 DUF3737: Protein of u 36.4 3.3E+02 0.0072 27.8 10.1 142 163-350 87-247 (277)
80 PF07172 GRP: Glycine rich pro 34.4 17 0.00038 31.1 0.7 13 1-14 1-13 (95)
81 COG3458 Acetyl esterase (deace 31.9 28 0.0006 35.8 1.8 18 26-43 22-39 (321)
82 PF01696 Adeno_E1B_55K: Adenov 31.0 2.9E+02 0.0063 29.6 9.1 99 191-307 137-238 (386)
83 PF06355 Aegerolysin: Aegeroly 26.8 3E+02 0.0066 24.8 7.4 71 198-274 14-88 (131)
84 KOG1777 Putative Zn-finger pro 26.0 60 0.0013 35.4 3.1 61 147-214 452-516 (625)
85 PF07822 Toxin_13: Neurotoxin 25.3 21 0.00046 27.1 -0.2 19 89-107 20-38 (55)
86 PF05448 AXE1: Acetyl xylan es 25.1 42 0.00091 34.4 1.8 20 25-44 21-40 (320)
87 PLN02698 Probable pectinestera 22.7 2.1E+02 0.0045 31.5 6.6 48 197-261 268-316 (497)
88 PF03211 Pectate_lyase: Pectat 22.0 7.7E+02 0.017 24.3 9.8 50 233-284 74-124 (215)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-56 Score=436.62 Aligned_cols=272 Identities=31% Similarity=0.423 Sum_probs=218.1
Q ss_pred CCCcCCCCCeEEEEcCCCCCCCCCCCCccHHHHHhcCCCeEEEEeeceEEEeC------ceEEeeCCceEEeeCCccEEe
Q 036607 115 SKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQ------QELIVQGSKTIDGRGAKVHIA 188 (436)
Q Consensus 115 ~~ttGG~gG~vy~VT~~~d~~~~~p~pGtLR~av~~~~P~~IvF~~sg~I~L~------~~L~V~SnkTI~G~ga~v~I~ 188 (436)
.+||||.||++++|++.+| |...++..+|.++|.-+.|+|++. .+|.+.|||||.|.|++++|.
T Consensus 46 ~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~ 115 (345)
T COG3866 46 TGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV 115 (345)
T ss_pred CCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE
Confidence 3799999999999999988 678899999996556666999987 467788999999999999999
Q ss_pred cCccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEe-eCCceEEEeeeeecc--------ccCCc
Q 036607 189 NGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSI-FGSSNIWLDHLTLSQ--------AHDGL 259 (436)
Q Consensus 189 ~G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI-~gs~nVWIDHcSfS~--------~~DGl 259 (436)
|.||.|+.+.|||||||+|++...+ ....|+|+| .+++|||||||+|+. ..||+
T Consensus 116 -g~gl~i~~a~NVIirNltf~~~~~~----------------d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl 178 (345)
T COG3866 116 -GGGLKIRDAGNVIIRNLTFEGFYQG----------------DPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGL 178 (345)
T ss_pred -eceEEEEeCCcEEEEeeEEEeeccC----------------CCCCCcEEeccCCeEEEEEeeEeccccccccccCCCcc
Confidence 9999999999999999999976321 112699999 689999999999998 78999
Q ss_pred eeeecCCccEEEeCceecCCCceeEecCCCCc-cCCCceeEEEEeeEEcCCCCCcCccccceeEEEEcceEecCcceeee
Q 036607 260 IDAIQASTAITISNCHLSNHDKAILLGASDTF-TEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIG 338 (436)
Q Consensus 260 iDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~-~~d~~~~VTihhN~F~~~~~qR~Pr~R~G~~HvvNN~y~~w~~Yaig 338 (436)
+|+++++++||||||+|++|+|.||+|.+|+. .+|++.+||+|||+|. |+.||+||+|||.+||+||||.....|++.
T Consensus 179 ~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFk-n~~qR~PriRfG~vHvyNNYy~~~~~~g~a 257 (345)
T COG3866 179 VDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFK-NLYQRGPRIRFGMVHVYNNYYEGNPKFGVA 257 (345)
T ss_pred EEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccc-cccccCCceEeeEEEEeccccccCcccceE
Confidence 99999999999999999999999999999984 4578999999999996 899999999999999999999976655555
Q ss_pred cCCC--ceEEEeccEEecCCCCCccceeeeccCCCCCCccceEecCCceeeecceeecCCCCCCC---cC--CCCCCccc
Q 036607 339 GLQG--PTILSQGNRFFASNNQNAKEVTKRMNCSPEEGKSWIWRSEGDVLLNGAYFNSSGDPKKQ---IQ--YQMDDVIK 411 (436)
Q Consensus 339 ~s~~--~~I~~egNyF~a~~~~~~k~vt~r~~~~~~~~~~~~w~s~gD~~~nGa~f~~sg~~~~~---~~--y~~~~~~~ 411 (436)
..++ ++|++|+|||+....+..---|++. .++|.. -.|++|..++....+ +. ++...+++
T Consensus 258 ~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--------~GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Yt 324 (345)
T COG3866 258 ITIGTSAKIYVENNYFENGSEGLGFLDTKGT--------SGYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYT 324 (345)
T ss_pred EeeccceEEEEecceeccCCCCceeeecCCc--------cceEEe-----ccCceecccCCcccccCCccCCCCCCcccc
Confidence 5555 9999999999997544221111111 133332 235555555543222 22 33344568
Q ss_pred cCChhhHH-HHhccccc
Q 036607 412 PESGTEVE-RITKFAGA 427 (436)
Q Consensus 412 ~~p~~~v~-~lt~~AG~ 427 (436)
+.|...|. .+|++||+
T Consensus 325 vd~~~dVks~Vt~yAGa 341 (345)
T COG3866 325 VDPPEDVKSFVTNYAGA 341 (345)
T ss_pred cCChHHhhhhhhccccc
Confidence 89999995 77899994
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=2.9e-53 Score=400.51 Aligned_cols=191 Identities=41% Similarity=0.652 Sum_probs=163.5
Q ss_pred CCeEEEEeeceEEEeCceEEeeCCceEEeeCCccEEecCccEEEe-ccccEEEECeEEeeccCCCCCceecCCCCcCCCC
Q 036607 152 EPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIANGAGIMLQ-FVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRG 230 (436)
Q Consensus 152 ~P~~IvF~~sg~I~L~~~L~V~SnkTI~G~ga~v~I~~G~gI~I~-~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~ 230 (436)
+|+ ||+++|+|+++.+|.|.|||||+|+|++++|. |.|+.|. +++|||||||+|+++ .++..++..+...
T Consensus 1 ~~~--ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~------~~~~~~~~~~~~~ 71 (200)
T PF00544_consen 1 EPL--IIKVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNV------PVDPGPDWSGDGD 71 (200)
T ss_dssp S-E--EEEEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECE------EEECSTEEETTEE
T ss_pred CcE--EEEEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEec------cccCCcccCCCcc
Confidence 355 45777999999999999999999999999999 8899997 999999999999974 1222233333445
Q ss_pred CCCCCeeEeeCCceEEEeeeeeccc--------cCCceeeecCCccEEEeCceecCCCceeEecCCCCccCCCceeEEEE
Q 036607 231 QSDGDAVSIFGSSNIWLDHLTLSQA--------HDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVA 302 (436)
Q Consensus 231 ~~dgDaIsI~gs~nVWIDHcSfS~~--------~DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~VTih 302 (436)
..++|+|+|++++|||||||+|+|+ .||++|++.+|++||||||+|.+|+|+||+|++|+...+..++||||
T Consensus 72 ~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~h 151 (200)
T PF00544_consen 72 SSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFH 151 (200)
T ss_dssp ECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEE
T ss_pred ccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEE
Confidence 6789999999999999999999999 99999999999999999999999999999999988766767999999
Q ss_pred eeEEcCCCCCcCccccceeEEEEcceEecCcceeeecCCCceEEEeccEE
Q 036607 303 FNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLQGPTILSQGNRF 352 (436)
Q Consensus 303 hN~F~~~~~qR~Pr~R~G~~HvvNN~y~~w~~Yaig~s~~~~I~~egNyF 352 (436)
||||. ++.+||||+|+|++|+|||+|+++..||+++++++++++|+|||
T Consensus 152 hN~f~-~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 152 HNYFA-NTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp S-EEE-EEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred eEEEC-chhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 99997 89999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=1.2e-48 Score=366.53 Aligned_cols=171 Identities=54% Similarity=0.825 Sum_probs=159.9
Q ss_pred ceEEeeCCceEEeeCCccEEecCccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEE
Q 036607 168 QELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWL 247 (436)
Q Consensus 168 ~~L~V~SnkTI~G~ga~v~I~~G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWI 247 (436)
.+|.|+|||||+|+|++++|. |.||.|+.++|||||||+|+++.+. ..+++|+|++.+++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~---------------~~~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV---------------YGSDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC---------------CCCCCCEEEEeCCCeEEE
Confidence 578999999999999999998 9999999999999999999976432 126889999999999999
Q ss_pred eeeeeccc---------cCCceeeecCCccEEEeCceecCCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCcccc
Q 036607 248 DHLTLSQA---------HDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVR 318 (436)
Q Consensus 248 DHcSfS~~---------~DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~VTihhN~F~~~~~qR~Pr~R 318 (436)
|||+|+|+ .|+++|++.++++||||||+|.+|.|++|+|++|++..+..++||+|||+|. ++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999999877667899999999998 7999999999
Q ss_pred ceeEEEEcceEecCcceeeecCCCceEEEeccEEecC
Q 036607 319 FGFAHVVNNDYNQWEMYAIGGLQGPTILSQGNRFFAS 355 (436)
Q Consensus 319 ~G~~HvvNN~y~~w~~Yaig~s~~~~I~~egNyF~a~ 355 (436)
+|++|++||||++|..||++.++++++++|+|||+..
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999875
No 4
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=99.74 E-value=1.4e-18 Score=133.48 Aligned_cols=52 Identities=35% Similarity=0.606 Sum_probs=49.4
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccCCChHhHHHHHhHhhhh-hh---hhhhhhhcc
Q 036607 24 HIAEVNEVWRRRAEEAMQTTEQYYDPNPVAVANHLNMKVQD-LS---KQAIAKRGL 75 (436)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~ 75 (436)
||++||||||+|+++|++.++++|+|||++|+++||++|++ ++ +.|++||+|
T Consensus 1 nI~efDeyW~~Ra~eA~~~a~~aY~pdP~~Vt~~FN~~V~~~~~~~~~~nstRR~L 56 (56)
T PF04431_consen 1 NIGEFDEYWQKRAEEARKAALAAYVPDPENVTNEFNRHVHRAMEDVEGTNSTRRNL 56 (56)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccCccccCC
Confidence 79999999999999999999999999999999999999998 55 789999987
No 5
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.90 E-value=3.6e-07 Score=92.51 Aligned_cols=239 Identities=15% Similarity=0.140 Sum_probs=133.8
Q ss_pred HHHHHhcCCCeEEEEeeceEEEeCceEEee-CCceEEeeCCc-cEEec------CccEEEeccccEEEECeEEeeccCCC
Q 036607 144 LRHAVIQKEPLWIIFAKDMNIKLQQELIVQ-GSKTIDGRGAK-VHIAN------GAGIMLQFVKNVIIHGIHIHNISPCS 215 (436)
Q Consensus 144 LR~av~~~~P~~IvF~~sg~I~L~~~L~V~-SnkTI~G~ga~-v~I~~------G~gI~I~~a~NVIIrnL~i~~~~~~~ 215 (436)
|.+|+.+..|--.++=..|+-++++.|.|. +++||.|.|.. ..|.. +.+|.+ .++||.|++|+|++... .
T Consensus 1 iQ~Ai~~A~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~-~ 78 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKG-D 78 (314)
T ss_pred CHhHHhhCCCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCC-C
Confidence 456777777765444455788877888887 78888888764 33321 334554 47777777777765321 1
Q ss_pred CCceecCCC--------CcC--CCCCCCCCeeEeeCCceEEEeeeeeccccCCceeeecCCccEEEeCceecCCCceeEe
Q 036607 216 GGMIRDSVD--------HVG--KRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILL 285 (436)
Q Consensus 216 ~g~i~~s~~--------~~g--~~~~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H~k~mLi 285 (436)
|=.++.+.. ... ......++||.+..++++-|.+|.++...|--|-+. .|++++|++|.+.+-..+..+
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~-~s~~~~v~nN~~~~n~~GI~i 157 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVG-QSQNIVVRNNVAEENVAGIEI 157 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEEC-CCCCeEEECCEEccCcceEEE
Confidence 101111100 000 001135678888888889999998888777444443 578888888888765555544
Q ss_pred cCCCCccCCCceeEEEEeeEEcCCCCC----cCcc---ccceeEEEEcceEecCc----------------ceeeecCCC
Q 036607 286 GASDTFTEDKKMQVTVAFNRFDKGLVQ----RMPC---VRFGFAHVVNNDYNQWE----------------MYAIGGLQG 342 (436)
Q Consensus 286 G~sd~~~~d~~~~VTihhN~F~~~~~q----R~Pr---~R~G~~HvvNN~y~~w~----------------~Yaig~s~~ 342 (436)
-.|. .+.+.+|.+..+... =.|. +--..+.+.||.+.+.. ..+|-....
T Consensus 158 ~~S~--------~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~ 229 (314)
T TIGR03805 158 ENSQ--------NADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMAN 229 (314)
T ss_pred EecC--------CcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcc
Confidence 4332 456667776522111 0111 11235677777775421 112222233
Q ss_pred ceEEEeccEEecCCCCCccceeeecc------CCCCCCccceEecCCceeeecceeecCCCC
Q 036607 343 PTILSQGNRFFASNNQNAKEVTKRMN------CSPEEGKSWIWRSEGDVLLNGAYFNSSGDP 398 (436)
Q Consensus 343 ~~I~~egNyF~a~~~~~~k~vt~r~~------~~~~~~~~~~w~s~gD~~~nGa~f~~sg~~ 398 (436)
..+.+++|.|..-.....- ++.-.. +.+..|.. . ..++.+-++.|...|..
T Consensus 230 ~~v~I~~N~i~~n~~~~i~-~~~~~~~~~~~~~~~~~~~~---~-~~~v~i~~N~~~~~g~~ 286 (314)
T TIGR03805 230 RDVEIFGNVISNNDTANVL-ISSYHSTGLPDQPPDDGFDP---Y-PRNISIHDNTFSDGGTN 286 (314)
T ss_pred cceEEECCEEeCCcceeEE-EEecccccCCCCCcCCCccC---C-CcceEEEccEeecCCCC
Confidence 5778899999876654321 111110 11122222 2 26777878888877764
No 6
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.34 E-value=6.9e-06 Score=86.20 Aligned_cols=165 Identities=17% Similarity=0.189 Sum_probs=77.5
Q ss_pred cHHHHHhcCCCeEEEEeeceEEEeCceEEee------CCceEEeeCC-ccEEecCccEEEeccccEEEECeEEeeccCCC
Q 036607 143 TLRHAVIQKEPLWIIFAKDMNIKLQQELIVQ------GSKTIDGRGA-KVHIANGAGIMLQFVKNVIIHGIHIHNISPCS 215 (436)
Q Consensus 143 tLR~av~~~~P~~IvF~~sg~I~L~~~L~V~------SnkTI~G~ga-~v~I~~G~gI~I~~a~NVIIrnL~i~~~~~~~ 215 (436)
+|..|+.+-.|--.|+=.+|+-+ ..+|.+. ..+||..+.+ .|.|.+..+|.| ..+.++|.+|.|++..+..
T Consensus 6 ~lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i-~G~yl~v~GL~F~ng~~~~ 83 (425)
T PF14592_consen 6 ELQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRI-SGSYLVVSGLKFKNGYTPT 83 (425)
T ss_dssp HHHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE---T
T ss_pred HHHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEE-EeeeEEEeCeEEecCCCCC
Confidence 48899988777665555668876 3456653 3589999855 588885567788 4799999999999865322
Q ss_pred CCceecC--CC---------------CcCCCCCCCCCeeEe----eCCceEEEeeeeecccc-CC-ceeee-------cC
Q 036607 216 GGMIRDS--VD---------------HVGKRGQSDGDAVSI----FGSSNIWLDHLTLSQAH-DG-LIDAI-------QA 265 (436)
Q Consensus 216 ~g~i~~s--~~---------------~~g~~~~~dgDaIsI----~gs~nVWIDHcSfS~~~-DG-liDv~-------~g 265 (436)
+..+.-. .+ .|... ..+.+...| .-++|--||||+|..-. .| +|-+. .-
T Consensus 84 ~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~-~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~ 162 (425)
T PF14592_consen 84 GAVISFRNGGDASYANHCRLTNCVIDDFNNP-DREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSI 162 (425)
T ss_dssp TT--TTS--SEEE-SSS-EEES-EEES--SS--S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS---
T ss_pred CceEEeecCCCcceecceEEEeEEeeccCCc-ccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCcccc
Confidence 2111100 00 11100 112223333 23566778999998732 22 22222 23
Q ss_pred CccEEEeCceecC-------CCceeEecCCCCccCCCceeEEEEeeEEcCCCCCc
Q 036607 266 STAITISNCHLSN-------HDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQR 313 (436)
Q Consensus 266 S~~VTISnn~f~~-------H~k~mLiG~sd~~~~d~~~~VTihhN~F~~~~~qR 313 (436)
..+-+|.+|+|.+ ..+++-||.|.....+ -+.+|.+|+|. +|..-
T Consensus 163 ~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlFe-~cdGE 214 (425)
T PF14592_consen 163 ANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLFE-RCDGE 214 (425)
T ss_dssp ----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEE-EE-SS
T ss_pred ccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchhh-hcCCc
Confidence 4578999999984 4577888977654323 37899999998 57653
No 7
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.08 E-value=5.5e-05 Score=65.75 Aligned_cols=133 Identities=25% Similarity=0.272 Sum_probs=85.9
Q ss_pred cEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccccCCceeeecCCccEEE
Q 036607 192 GIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITI 271 (436)
Q Consensus 192 gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~VTI 271 (436)
||.|....++.|++.+|++. .++||.+.++..+.|+.|+|.+...| |.+. +..+++|
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~g-i~~~-~~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYG-IYVS-GGSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTS-EEEE-CCES-EE
T ss_pred EEEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcE-EEEe-cCCCeEE
Confidence 78888899999999999953 46899999999999999999994444 4554 3589999
Q ss_pred eCceecCCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCcccc--ceeEEEEcceEecCcceeeecCC--CceEEE
Q 036607 272 SNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVR--FGFAHVVNNDYNQWEMYAIGGLQ--GPTILS 347 (436)
Q Consensus 272 Snn~f~~H~k~mLiG~sd~~~~d~~~~VTihhN~F~~~~~qR~Pr~R--~G~~HvvNN~y~~w~~Yaig~s~--~~~I~~ 347 (436)
++|.|.+......+-.+ -.+++.+|.|. ++..-.=.+. ...+.+.||.+.+-..+++.... .+.+.+
T Consensus 59 ~~~~~~~~~~~i~~~~~--------~~~~i~~~~i~-~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGS--------SNITIENNRIE-NNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS---------CS-EEES-EEE-CSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEec--------CCceecCcEEE-cCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 99999987743333322 26888999987 4433233333 33588899999887666655444 348889
Q ss_pred eccEEecCC
Q 036607 348 QGNRFFASN 356 (436)
Q Consensus 348 egNyF~a~~ 356 (436)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 999997654
No 8
>PLN02218 polygalacturonase ADPG
Probab=98.05 E-value=0.00013 Score=77.30 Aligned_cols=137 Identities=17% Similarity=0.239 Sum_probs=94.2
Q ss_pred ccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccccCCceeeecCCccEE
Q 036607 191 AGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAIT 270 (436)
Q Consensus 191 ~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~VT 270 (436)
..|.+..++||+|+||+|.. |. .....|||.+.+++||.|.+|.++.+ |..|.++.++++|+
T Consensus 216 w~i~~~~~~nV~i~~v~I~a--~~---------------~spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~ 277 (431)
T PLN02218 216 IQISIEKCSNVQVSNVVVTA--PA---------------DSPNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQ 277 (431)
T ss_pred EEEEEEceeeEEEEEEEEeC--CC---------------CCCCCCcEeecccceEEEEccEEecC-CceEEecCCCceEE
Confidence 34555688999999999974 21 12467999999999999999999987 66789999999999
Q ss_pred EeCceecCCCceeEecCCCCc-cCCCceeEEEEeeEEcCCCCCcCcccc---ceeEEEEcceEecCcceeeecCCCceEE
Q 036607 271 ISNCHLSNHDKAILLGASDTF-TEDKKMQVTVAFNRFDKGLVQRMPCVR---FGFAHVVNNDYNQWEMYAIGGLQGPTIL 346 (436)
Q Consensus 271 ISnn~f~~H~k~mLiG~sd~~-~~d~~~~VTihhN~F~~~~~qR~Pr~R---~G~~HvvNN~y~~w~~Yaig~s~~~~I~ 346 (436)
|+||.+.. ..++-+|+--.+ ..+...+|++.++.|. + ..+.=|++ .|.-.+-|=.|.+..|-.+ ..| |.
T Consensus 278 I~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~~-~-t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V---~~p-I~ 350 (431)
T PLN02218 278 INDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKLS-G-TDNGVRIKTYQGGSGTASNIIFQNIQMENV---KNP-II 350 (431)
T ss_pred EEeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEEe-c-CCcceEEeecCCCCeEEEEEEEEeEEEEcc---ccc-EE
Confidence 99999953 345668864332 2345678999999986 3 45566664 2333444545555544333 223 44
Q ss_pred EeccEE
Q 036607 347 SQGNRF 352 (436)
Q Consensus 347 ~egNyF 352 (436)
+.-+|.
T Consensus 351 Idq~Y~ 356 (431)
T PLN02218 351 IDQDYC 356 (431)
T ss_pred EEeecc
Confidence 555553
No 9
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.90 E-value=0.00037 Score=73.27 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=81.7
Q ss_pred CccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccccCCceeeecCCccE
Q 036607 190 GAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAI 269 (436)
Q Consensus 190 G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~V 269 (436)
...|.+..++||.|++|+|... . .....|||.+..++||+|.+|.++.+.| .|.++.++++|
T Consensus 178 ~w~i~~~~~~~v~i~~v~I~~~--~---------------~spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI 239 (404)
T PLN02188 178 FFHIALVECRNFKGSGLKISAP--S---------------DSPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQV 239 (404)
T ss_pred CeEEEEEccccEEEEEEEEeCC--C---------------CCCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccE
Confidence 4466667899999999999842 1 1246799999999999999999998877 67899899999
Q ss_pred EEeCceecCCCceeEecCCCCc-cCCCceeEEEEeeEEcCCCCCcCcccc
Q 036607 270 TISNCHLSNHDKAILLGASDTF-TEDKKMQVTVAFNRFDKGLVQRMPCVR 318 (436)
Q Consensus 270 TISnn~f~~H~k~mLiG~sd~~-~~d~~~~VTihhN~F~~~~~qR~Pr~R 318 (436)
+|+|+.+.. ..++-+|+--.+ .......|++.++.|. + .++.=|++
T Consensus 240 ~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~-~-t~~GiriK 286 (404)
T PLN02188 240 TITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT-G-TTNGIRIK 286 (404)
T ss_pred EEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE-C-CCcEEEEE
Confidence 999999854 345668863222 2244678999999997 3 34555553
No 10
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.89 E-value=0.00038 Score=74.15 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=83.8
Q ss_pred cEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccccCCceeeecCCccEEE
Q 036607 192 GIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITI 271 (436)
Q Consensus 192 gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~VTI 271 (436)
.|.+..++||.|++|+|.... .....|||.+.+++||+|.+|.++.+ |..|.++.++++|+|
T Consensus 163 ~i~i~~c~nV~i~~l~I~ap~-----------------~spNTDGIDi~~S~nV~I~n~~I~tG-DDCIaiksgs~NI~I 224 (456)
T PLN03003 163 HIHISECNYVTISSLRINAPE-----------------SSPNTDGIDVGASSNVVIQDCIIATG-DDCIAINSGTSNIHI 224 (456)
T ss_pred EEEEeccccEEEEEEEEeCCC-----------------CCCCCCcEeecCcceEEEEecEEecC-CCeEEeCCCCccEEE
Confidence 444456777888888777421 13567999999999999999999877 555689999999999
Q ss_pred eCceecCCCceeEecCCCCcc-CCCceeEEEEeeEEcCCCCCcCcccc---ceeEEEEcceEecCc
Q 036607 272 SNCHLSNHDKAILLGASDTFT-EDKKMQVTVAFNRFDKGLVQRMPCVR---FGFAHVVNNDYNQWE 333 (436)
Q Consensus 272 Snn~f~~H~k~mLiG~sd~~~-~d~~~~VTihhN~F~~~~~qR~Pr~R---~G~~HvvNN~y~~w~ 333 (436)
+|+.+.. ..++-||+--++. .+...+|++.++.|. + ..+.=|++ .|.-.+-|=.|.|..
T Consensus 225 ~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~-~-T~nGvRIKT~~Gg~G~v~nItf~nI~ 287 (456)
T PLN03003 225 SGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFR-G-TMNGARIKTWQGGSGYARMITFNGIT 287 (456)
T ss_pred EeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEE-C-CCcEEEEEEeCCCCeEEEEEEEEeEE
Confidence 9999864 3356688643332 345779999999996 4 45555664 232334444444443
No 11
>PLN02155 polygalacturonase
Probab=97.88 E-value=0.00033 Score=73.42 Aligned_cols=124 Identities=16% Similarity=0.163 Sum_probs=88.6
Q ss_pred CccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccccCCceeeecCCccE
Q 036607 190 GAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAI 269 (436)
Q Consensus 190 G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~V 269 (436)
-.-|.+.+++||.|+||+|... . .....|||.+..++||+|.+|.+..+.| .|.++.++++|
T Consensus 168 ~w~i~~~~~~nv~i~~v~I~~p--~---------------~~~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI 229 (394)
T PLN02155 168 VSHMTLNGCTNVVVRNVKLVAP--G---------------NSPNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNF 229 (394)
T ss_pred CeEEEEECeeeEEEEEEEEECC--C---------------CCCCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceE
Confidence 4455666899999999999842 1 1246799999999999999999988877 67888899999
Q ss_pred EEeCceecCCCceeEecCCCCc-cCCCceeEEEEeeEEcCCCCCcCccccc----eeEEEEcceEecCcc
Q 036607 270 TISNCHLSNHDKAILLGASDTF-TEDKKMQVTVAFNRFDKGLVQRMPCVRF----GFAHVVNNDYNQWEM 334 (436)
Q Consensus 270 TISnn~f~~H~k~mLiG~sd~~-~~d~~~~VTihhN~F~~~~~qR~Pr~R~----G~~HvvNN~y~~w~~ 334 (436)
+|++|.+.. ..++-||+--.+ ..+...+|++.++.|. + ..+.=|++- +.-.|-|=.|.+..|
T Consensus 230 ~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~-~-t~~GirIKT~~~~~gG~v~nI~f~ni~m 296 (394)
T PLN02155 230 LITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFT-G-SQNGVRIKSWARPSTGFVRNVFFQDLVM 296 (394)
T ss_pred EEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEe-C-CCcEEEEEEecCCCCEEEEEEEEEeEEE
Confidence 999999875 335678875322 2345679999999996 3 345555531 123344445555443
No 12
>PLN02793 Probable polygalacturonase
Probab=97.84 E-value=0.00053 Score=72.86 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=80.1
Q ss_pred CccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccccCCceeeecCCccE
Q 036607 190 GAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAI 269 (436)
Q Consensus 190 G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~V 269 (436)
...|.+..++||.|+||+|.... .....|||.+..++||+|.+|.+..+ |..|.++.++++|
T Consensus 200 ~~~i~~~~~~nv~i~~l~I~~p~-----------------~spNTDGIdi~~s~nV~I~n~~I~~g-DDcIaik~~s~nI 261 (443)
T PLN02793 200 QMHIAFTNCRRVTISGLKVIAPA-----------------TSPNTDGIHISASRGVVIKDSIVRTG-DDCISIVGNSSRI 261 (443)
T ss_pred CeEEEEEccCcEEEEEEEEECCC-----------------CCCCCCcEeeeccceEEEEeCEEeCC-CCeEEecCCcCCE
Confidence 34556668999999999998421 12467999999999999999998855 6667888899999
Q ss_pred EEeCceecCCCceeEecCCCCc-cCCCceeEEEEeeEEcCCCCCcCcccc
Q 036607 270 TISNCHLSNHDKAILLGASDTF-TEDKKMQVTVAFNRFDKGLVQRMPCVR 318 (436)
Q Consensus 270 TISnn~f~~H~k~mLiG~sd~~-~~d~~~~VTihhN~F~~~~~qR~Pr~R 318 (436)
+|+||.+.. ..+.-||+--.+ .......|++.++.|. + ..+.=|++
T Consensus 262 ~I~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~-~-t~~GirIK 308 (443)
T PLN02793 262 KIRNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLS-N-TDNGVRIK 308 (443)
T ss_pred EEEEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEe-C-CCceEEEE
Confidence 999999864 234567863221 2244678999999986 3 44555664
No 13
>PLN03010 polygalacturonase
Probab=97.80 E-value=0.0011 Score=69.85 Aligned_cols=135 Identities=19% Similarity=0.196 Sum_probs=86.0
Q ss_pred EEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccccCCceeeecCCccEEEeC
Q 036607 194 MLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISN 273 (436)
Q Consensus 194 ~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISn 273 (436)
.+..++||.|+||+|.... .....|||.+..++||+|.+|.+..+ |..|.++.++++++|.+
T Consensus 184 ~i~~~~nv~i~~i~I~a~~-----------------~s~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~ 245 (409)
T PLN03010 184 SIKTCNYVAISKINILAPE-----------------TSPNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQ 245 (409)
T ss_pred EEeccccEEEEEEEEeCCC-----------------CCCCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEE
Confidence 3345667777777766311 12467999999999999999988877 66779998888888887
Q ss_pred ceecCCCceeEecCCCCc-cCCCceeEEEEeeEEcCCCCCcCcccc---ceeEEEEcceEecCcceeeecCCCceEEEec
Q 036607 274 CHLSNHDKAILLGASDTF-TEDKKMQVTVAFNRFDKGLVQRMPCVR---FGFAHVVNNDYNQWEMYAIGGLQGPTILSQG 349 (436)
Q Consensus 274 n~f~~H~k~mLiG~sd~~-~~d~~~~VTihhN~F~~~~~qR~Pr~R---~G~~HvvNN~y~~w~~Yaig~s~~~~I~~eg 349 (436)
+.... ..++-||+--+. ..+...+|++.++.|. + .++.=|++ .|.-.|-|=.|.+..|..+ ..| |.+.-
T Consensus 246 ~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~-~-t~~GirIKt~~G~~G~v~nItf~nI~m~~v---~~p-I~I~q 318 (409)
T PLN03010 246 INCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN-Q-TTNGARIKTWQGGQGYARNISFENITLINT---KNP-IIIDQ 318 (409)
T ss_pred EEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe-C-CCcceEEEEecCCCEEEEEeEEEeEEEecC---Ccc-EEEEe
Confidence 77653 224557754322 2344678999999996 3 44555554 2333455555555543322 233 55555
Q ss_pred cEEe
Q 036607 350 NRFF 353 (436)
Q Consensus 350 NyF~ 353 (436)
+|..
T Consensus 319 ~Y~~ 322 (409)
T PLN03010 319 QYID 322 (409)
T ss_pred eccC
Confidence 5543
No 14
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.74 E-value=0.00038 Score=70.77 Aligned_cols=134 Identities=22% Similarity=0.269 Sum_probs=90.8
Q ss_pred cCCCeEEEEeeceEEEeCceEEeeCCceEEeeCCccEEecCccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCC
Q 036607 150 QKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKR 229 (436)
Q Consensus 150 ~~~P~~IvF~~sg~I~L~~~L~V~SnkTI~G~ga~v~I~~G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~ 229 (436)
...|+.|.|...-.+.++ ++||.- + |...+.+..++||.|++|+|+...
T Consensus 89 ~~rp~~i~~~~~~~~~i~-------~i~~~n--s-----p~w~~~~~~~~nv~i~~i~I~~~~----------------- 137 (326)
T PF00295_consen 89 QRRPRLIRFNNCKNVTIE-------GITIRN--S-----PFWHIHINDCDNVTISNITINNPA----------------- 137 (326)
T ss_dssp SSSSESEEEEEEEEEEEE-------SEEEES--------SSESEEEESEEEEEEESEEEEEGG-----------------
T ss_pred ccccceeeeeeecceEEE-------eeEecC--C-----CeeEEEEEccCCeEEcceEEEecC-----------------
Confidence 356888888754223222 222221 1 455677778999999999999642
Q ss_pred CCCCCCeeEeeCCceEEEeeeeeccccCCceeeecCCccEEEeCceecCCCceeEecCCCCc-cCCCceeEEEEeeEEcC
Q 036607 230 GQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTF-TEDKKMQVTVAFNRFDK 308 (436)
Q Consensus 230 ~~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~-~~d~~~~VTihhN~F~~ 308 (436)
.....|||.+.+++||.|++|.+..+ |..|.++.++.+|+|+||.|.. ..++-+|+--.. .......|++.++.|.
T Consensus 138 ~~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~- 214 (326)
T PF00295_consen 138 NSPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTII- 214 (326)
T ss_dssp GCTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEE-
T ss_pred CCCCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEee-
Confidence 12467999999999999999999776 6677888888899999999974 334667743221 1123468999999996
Q ss_pred CCCCcCcccc
Q 036607 309 GLVQRMPCVR 318 (436)
Q Consensus 309 ~~~qR~Pr~R 318 (436)
+ ..|.-|++
T Consensus 215 ~-t~~gi~iK 223 (326)
T PF00295_consen 215 N-TDNGIRIK 223 (326)
T ss_dssp S-ESEEEEEE
T ss_pred c-cceEEEEE
Confidence 3 45665554
No 15
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.68 E-value=0.00057 Score=59.34 Aligned_cols=131 Identities=23% Similarity=0.232 Sum_probs=79.9
Q ss_pred CccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccccCCceeeecCCccE
Q 036607 190 GAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAI 269 (436)
Q Consensus 190 G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~V 269 (436)
+.||.+...+++.|++-.|++ .+.+|.+.+..++.|+.|.|+.+. ..+.+. .+..+
T Consensus 23 ~~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~-~~~~~ 78 (158)
T PF13229_consen 23 GDGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYVS-GSSNI 78 (158)
T ss_dssp SECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEECC-S-CS-
T ss_pred CeEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEEE-ecCCc
Confidence 568888888888888888883 357888888899999999999888 444554 68899
Q ss_pred EEeCceecCCCc-eeEecCCCCccCCCceeEEEEeeEEcCCCCCcCccccc-e--eEEEEcceEecCcceeeecCCCce-
Q 036607 270 TISNCHLSNHDK-AILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRF-G--FAHVVNNDYNQWEMYAIGGLQGPT- 344 (436)
Q Consensus 270 TISnn~f~~H~k-~mLiG~sd~~~~d~~~~VTihhN~F~~~~~qR~Pr~R~-G--~~HvvNN~y~~w~~Yaig~s~~~~- 344 (436)
+|++|.|.+... ++.+.. ....+++.+|.|. ++.+-.=.+.. . .+-+.||.+++...++|....+..
T Consensus 79 ~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~-~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~ 150 (158)
T PF13229_consen 79 TIENNRIENNGDYGIYISN-------SSSNVTIENNTIH-NNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSN 150 (158)
T ss_dssp EEES-EEECSSS-SCE-TC-------EECS-EEES-EEE-CCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS-
T ss_pred eecCcEEEcCCCccEEEec-------cCCCEEEEeEEEE-eCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCe
Confidence 999999988655 444432 1236888899987 44433223322 2 466788888887778886555544
Q ss_pred EEEeccEE
Q 036607 345 ILSQGNRF 352 (436)
Q Consensus 345 I~~egNyF 352 (436)
+.+.+|.|
T Consensus 151 ~~v~~n~~ 158 (158)
T PF13229_consen 151 CTVTNNTF 158 (158)
T ss_dssp -EEES-E-
T ss_pred EEEECCCC
Confidence 78888876
No 16
>PLN02218 polygalacturonase ADPG
Probab=97.55 E-value=0.0054 Score=65.11 Aligned_cols=170 Identities=18% Similarity=0.230 Sum_probs=107.4
Q ss_pred CCeEEEEeeceEEEeCceEEeeCC--ceEEeeCCcc-----EEe---c---C-ccEEEeccccEEEECeEEeeccCCCCC
Q 036607 152 EPLWIIFAKDMNIKLQQELIVQGS--KTIDGRGAKV-----HIA---N---G-AGIMLQFVKNVIIHGIHIHNISPCSGG 217 (436)
Q Consensus 152 ~P~~IvF~~sg~I~L~~~L~V~Sn--kTI~G~ga~v-----~I~---~---G-~gI~I~~a~NVIIrnL~i~~~~~~~~g 217 (436)
...||.|..- ..|.|... =||+|+|+.- ... + . .-|.+.+++|+.|++|+|++.
T Consensus 146 ~~~wi~~~~~------~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nS------ 213 (431)
T PLN02218 146 ISKWIMFDGV------NNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNA------ 213 (431)
T ss_pred cccCEEEecC------cEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcC------
Confidence 3356766521 24555443 5889998521 000 0 1 146778999999999999963
Q ss_pred ceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeecc-----ccCCceeeecCCccEEEeCceecCCCceeEecCCCCcc
Q 036607 218 MIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQ-----AHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFT 292 (436)
Q Consensus 218 ~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~-----~~DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~~ 292 (436)
..=.|.+..++||.|++.++.. -.|| ||+. .|++|+|++|.|...+...-+.+..
T Consensus 214 ---------------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDG-Idi~-ss~nV~I~n~~I~tGDDcIaIksgs--- 273 (431)
T PLN02218 214 ---------------QQIQISIEKCSNVQVSNVVVTAPADSPNTDG-IHIT-NTQNIRVSNSIIGTGDDCISIESGS--- 273 (431)
T ss_pred ---------------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCc-Eeec-ccceEEEEccEEecCCceEEecCCC---
Confidence 2346888999999999999865 4566 4764 5899999999999988887776542
Q ss_pred CCCceeEEEEeeEEcCCCC------CcCccc-cceeEEEEcceEecCcceeee-------cCCCceEEEeccEEecCCCC
Q 036607 293 EDKKMQVTVAFNRFDKGLV------QRMPCV-RFGFAHVVNNDYNQWEMYAIG-------GLQGPTILSQGNRFFASNNQ 358 (436)
Q Consensus 293 ~d~~~~VTihhN~F~~~~~------qR~Pr~-R~G~~HvvNN~y~~w~~Yaig-------~s~~~~I~~egNyF~a~~~~ 358 (436)
.+|++.++.+.++.. .+.+.- -.-.++|-|+.+.+.. +++. ++.-..|.+++...+....+
T Consensus 274 ----~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~p 348 (431)
T PLN02218 274 ----QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQNIQMENVKNP 348 (431)
T ss_pred ----ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEEeEEEEccccc
Confidence 378888888763321 011100 0114666666666532 3331 11224677788887776554
No 17
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.53 E-value=0.0038 Score=63.43 Aligned_cols=160 Identities=13% Similarity=0.079 Sum_probs=94.9
Q ss_pred CCceEEeeCCccEEecCccEEEeccccEEEECeEEeeccC-----CCCCce-ecCCCCc--CCC-CCCCCCeeEeeCCce
Q 036607 174 GSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISP-----CSGGMI-RDSVDHV--GKR-GQSDGDAVSIFGSSN 244 (436)
Q Consensus 174 SnkTI~G~ga~v~I~~G~gI~I~~a~NVIIrnL~i~~~~~-----~~~g~i-~~s~~~~--g~~-~~~dgDaIsI~gs~n 244 (436)
+++||.|.+- +=.++.||.+++++|++|+++++..... +.-|.. ..+.+.. +.+ ....++||.+..+++
T Consensus 63 ~~VtI~~ltI--~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~ 140 (314)
T TIGR03805 63 DDVTLSDLAV--ENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQN 140 (314)
T ss_pred CCeEEEeeEE--EcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECCCCC
Confidence 4666666531 0012567777777888888887752110 000110 0010000 000 122346899999999
Q ss_pred EEEeeeeeccccCCceeeecCCccEEEeCceecCCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcC----------
Q 036607 245 IWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRM---------- 314 (436)
Q Consensus 245 VWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~VTihhN~F~~~~~qR~---------- 314 (436)
+.|-+|.+.....|. -+. .|.++.|.+|.+.+-.-+.++-..+....-...++++++|.|. ++...+
T Consensus 141 ~~v~nN~~~~n~~GI-~i~-~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~-~n~~~n~~~~gn~v~~ 217 (314)
T TIGR03805 141 IVVRNNVAEENVAGI-EIE-NSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIF-DNNTPNFAPAGSIVAS 217 (314)
T ss_pred eEEECCEEccCcceE-EEE-ecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEE-CCCCCCCcccCCceec
Confidence 999999999887774 333 4889999999999876666663322211112348999999997 443332
Q ss_pred -ccccc------eeEEEEcceEecCcceeee
Q 036607 315 -PCVRF------GFAHVVNNDYNQWEMYAIG 338 (436)
Q Consensus 315 -Pr~R~------G~~HvvNN~y~~w~~Yaig 338 (436)
|.-+. -.+.+.||.+.+...+++.
T Consensus 218 ~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~ 248 (314)
T TIGR03805 218 VPAGTGVVVMANRDVEIFGNVISNNDTANVL 248 (314)
T ss_pred CCCCcEEEEEcccceEEECCEEeCCcceeEE
Confidence 11111 1469999999987655553
No 18
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.51 E-value=0.0077 Score=57.63 Aligned_cols=63 Identities=30% Similarity=0.311 Sum_probs=35.4
Q ss_pred CeeEeeCCceEEEeeeeeccccCCceeeecCCccEEEeCceecCCCceeEecCCCCccCCCceeEEEEeeEEc
Q 036607 235 DAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFD 307 (436)
Q Consensus 235 DaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~VTihhN~F~ 307 (436)
.||.+..+.+..|..+.|+....|. -+. ++...||++|.|.+...++.+-.+. +.+|.+|.|.
T Consensus 80 ~Gi~l~~s~~~~I~~N~i~~n~~GI-~l~-~s~~~~I~~N~i~~~~~GI~l~~s~--------~n~I~~N~i~ 142 (236)
T PF05048_consen 80 YGIYLMGSSNNTISNNTISNNGYGI-YLY-GSSNNTISNNTISNNGYGIYLSSSS--------NNTITGNTIS 142 (236)
T ss_pred CCEEEEcCCCcEEECCEecCCCceE-EEe-eCCceEEECcEEeCCCEEEEEEeCC--------CCEEECeEEe
Confidence 5666666665566666666666633 322 3555666666666555555443332 4566666665
No 19
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.46 E-value=0.0023 Score=59.38 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=27.7
Q ss_pred HHHHH--hc-CCCeEEEEeeceEEEeCceEEeeCCceEEeeCCc
Q 036607 144 LRHAV--IQ-KEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAK 184 (436)
Q Consensus 144 LR~av--~~-~~P~~IvF~~sg~I~L~~~L~V~SnkTI~G~ga~ 184 (436)
|..|+ .+ .+..+|.| ..|+..++++|.+.|++||.|.|..
T Consensus 21 iq~Ai~~~~~~~g~~v~~-P~G~Y~i~~~l~~~s~v~l~G~g~~ 63 (225)
T PF12708_consen 21 IQAAIDAAAAAGGGVVYF-PPGTYRISGTLIIPSNVTLRGAGGN 63 (225)
T ss_dssp HHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESSTT
T ss_pred HHHhhhhcccCCCeEEEE-cCcEEEEeCCeEcCCCeEEEccCCC
Confidence 67787 33 44455555 4589999999999999999998763
No 20
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.34 E-value=0.012 Score=62.54 Aligned_cols=115 Identities=10% Similarity=0.132 Sum_probs=72.1
Q ss_pred cHHHHHhcCC-C-eEEEEeeceEEEeCceEEeeCCceEEeeCCcc--EEecCccEEE-eccccEEEECeEEeeccCCCCC
Q 036607 143 TLRHAVIQKE-P-LWIIFAKDMNIKLQQELIVQGSKTIDGRGAKV--HIANGAGIML-QFVKNVIIHGIHIHNISPCSGG 217 (436)
Q Consensus 143 tLR~av~~~~-P-~~IvF~~sg~I~L~~~L~V~SnkTI~G~ga~v--~I~~G~gI~I-~~a~NVIIrnL~i~~~~~~~~g 217 (436)
-|+.|+.+-. | -.|++.. |+. +...|.+.+++||.|..... .|.++.++.+ ..++||-|++|+|++- |
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~-G~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs-----G 128 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPP-GVY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG-----G 128 (455)
T ss_pred HHHHHHHHhhcCCCEEEECC-Cce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC-----C
Confidence 3777776522 2 3355554 433 34779999999999995322 3664545543 4899999999999852 2
Q ss_pred ceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeecccc-CCceeeecCCccEEEeCceec
Q 036607 218 MIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAH-DGLIDAIQASTAITISNCHLS 277 (436)
Q Consensus 218 ~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~-DGliDv~~gS~~VTISnn~f~ 277 (436)
. ......-+|.+.+++++-|.+|.|.... -|. .+. ++. ..|++|.+.
T Consensus 129 ~----------dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI-~L~-~~~-~~I~~N~I~ 176 (455)
T TIGR03808 129 I----------PLPQRRGLIHCQGGRDVRITDCEITGSGGNGI-WLE-TVS-GDISGNTIT 176 (455)
T ss_pred C----------cccCCCCEEEEccCCceEEEeeEEEcCCcceE-EEE-cCc-ceEecceEe
Confidence 1 1123445788889999999999998873 553 332 233 444444444
No 21
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.24 E-value=0.0074 Score=64.15 Aligned_cols=158 Identities=22% Similarity=0.224 Sum_probs=90.4
Q ss_pred CceEEeeCCccEEecCccEEEeccccEEEECeEEeeccCCCC-------CceecCCCCcCCCCCCCCCeeEeeCCceEEE
Q 036607 175 SKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSG-------GMIRDSVDHVGKRGQSDGDAVSIFGSSNIWL 247 (436)
Q Consensus 175 nkTI~G~ga~v~I~~G~gI~I~~a~NVIIrnL~i~~~~~~~~-------g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWI 247 (436)
.+||+|.|.+..=. -++|.++.++++.|++.+|++.- +.| +.|.+..- ......+|.++.++++.|
T Consensus 121 GLtIdGsG~dl~~r-dAgI~v~~a~~v~Iedn~L~gsg-~FGI~L~~~~~~I~~N~I-----~g~~~~~I~lw~S~g~~V 193 (455)
T TIGR03808 121 GLTLDGGGIPLPQR-RGLIHCQGGRDVRITDCEITGSG-GNGIWLETVSGDISGNTI-----TQIAVTAIVSFDALGLIV 193 (455)
T ss_pred eeEEEeCCCcccCC-CCEEEEccCCceEEEeeEEEcCC-cceEEEEcCcceEecceE-----eccccceEEEeccCCCEE
Confidence 44777777544333 45888899999999999999641 010 11111100 012334488888889999
Q ss_pred eeeeeccccCCceeeecC-----------------------------------CccEEEeCceecCCCceeEecCCCCcc
Q 036607 248 DHLTLSQAHDGLIDAIQA-----------------------------------STAITISNCHLSNHDKAILLGASDTFT 292 (436)
Q Consensus 248 DHcSfS~~~DGliDv~~g-----------------------------------S~~VTISnn~f~~H~k~mLiG~sd~~~ 292 (436)
.+++++.+.|+.|-+.+. +.+++|++|.++++.+--+.+.+.+
T Consensus 194 ~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss-- 271 (455)
T TIGR03808 194 ARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSAS-- 271 (455)
T ss_pred ECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEccc--
Confidence 999999988865554422 4678888888888773333332222
Q ss_pred CCCceeEEEEeeEEcCCCCCcCccccc-e----e----EEEEcceEecC-cceeeec-CCCce-EEEeccEEec
Q 036607 293 EDKKMQVTVAFNRFDKGLVQRMPCVRF-G----F----AHVVNNDYNQW-EMYAIGG-LQGPT-ILSQGNRFFA 354 (436)
Q Consensus 293 ~d~~~~VTihhN~F~~~~~qR~Pr~R~-G----~----~HvvNN~y~~w-~~Yaig~-s~~~~-I~~egNyF~a 354 (436)
++.|..|.|. ++|+ | | .-+.||.++.. ..|++-. .++.+ ..++||...+
T Consensus 272 -----~~~i~~N~~~--------~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn 332 (455)
T TIGR03808 272 -----NIQITGNSVS--------DVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRN 332 (455)
T ss_pred -----CcEEECcEee--------eeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeec
Confidence 3444455442 3444 2 1 22556666543 3466532 22333 3456776654
No 22
>PLN02155 polygalacturonase
Probab=97.18 E-value=0.014 Score=61.46 Aligned_cols=141 Identities=20% Similarity=0.309 Sum_probs=94.4
Q ss_pred eEEEEeeceEEEeCceEEeeCCceEEeeCCccEEe--------cC-ccEEEeccccEEEECeEEeeccCCCCCceecCCC
Q 036607 154 LWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIA--------NG-AGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVD 224 (436)
Q Consensus 154 ~~IvF~~sg~I~L~~~L~V~SnkTI~G~ga~v~I~--------~G-~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~ 224 (436)
.||.|.. ...+.|.. =||+|||..---. ++ ..|.+..++||.|++|++++.
T Consensus 107 ~wi~~~~------~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS------------- 166 (394)
T PLN02155 107 YWILFNK------VNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS------------- 166 (394)
T ss_pred eeEEEEC------cCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-------------
Confidence 4776653 23455554 6889998631100 01 247888999999999999953
Q ss_pred CcCCCCCCCCCeeEeeCCceEEEeeeeecc-----ccCCceeeecCCccEEEeCceecCCCceeEecCCCCccCCCceeE
Q 036607 225 HVGKRGQSDGDAVSIFGSSNIWLDHLTLSQ-----AHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQV 299 (436)
Q Consensus 225 ~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~-----~~DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~V 299 (436)
..=.|.+.+++||.|+|.++.. -.||. |+. .+++|+|++|.|...+....+++.. .+|
T Consensus 167 --------p~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGi-di~-~s~nV~I~~~~I~~gDDcIaik~gs-------~nI 229 (394)
T PLN02155 167 --------QVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGF-HVQ-FSTGVTFTGSTVQTGDDCVAIGPGT-------RNF 229 (394)
T ss_pred --------CCeEEEEECeeeEEEEEEEEECCCCCCCCCcc-ccc-cceeEEEEeeEEecCCceEEcCCCC-------ceE
Confidence 2346888899999999999955 34664 764 5899999999999988888887543 268
Q ss_pred EEEeeEEcCCCC------CcCc-cccceeEEEEcceEec
Q 036607 300 TVAFNRFDKGLV------QRMP-CVRFGFAHVVNNDYNQ 331 (436)
Q Consensus 300 TihhN~F~~~~~------qR~P-r~R~G~~HvvNN~y~~ 331 (436)
+|..+.+..+.. .+.+ .-..-.+.|.|+.+.+
T Consensus 230 ~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~ 268 (394)
T PLN02155 230 LITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTG 268 (394)
T ss_pred EEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeC
Confidence 887777653211 1222 1111256777888775
No 23
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.09 E-value=0.0075 Score=57.73 Aligned_cols=132 Identities=23% Similarity=0.168 Sum_probs=98.4
Q ss_pred CccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccccCCceeeecCCccE
Q 036607 190 GAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAI 269 (436)
Q Consensus 190 G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~V 269 (436)
..||.+..++++.|++.+|++. ..||.+.+++++-|..|.++.+.+|. .+.. +.+.
T Consensus 35 ~~gi~~~~s~~~~I~~n~i~~~----------------------~~GI~~~~s~~~~i~~n~i~~n~~Gi-~l~~-s~~~ 90 (236)
T PF05048_consen 35 RDGIYVENSDNNTISNNTISNN----------------------RYGIHLMGSSNNTIENNTISNNGYGI-YLMG-SSNN 90 (236)
T ss_pred CCEEEEEEcCCeEEEeeEEECC----------------------CeEEEEEccCCCEEEeEEEEccCCCE-EEEc-CCCc
Confidence 4577788899999999998842 57899999999999999999999774 4443 4455
Q ss_pred EEeCceecCCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCccccc-eeEEEEcceEecCcceeee-cCCCceEEE
Q 036607 270 TISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRF-GFAHVVNNDYNQWEMYAIG-GLQGPTILS 347 (436)
Q Consensus 270 TISnn~f~~H~k~mLiG~sd~~~~d~~~~VTihhN~F~~~~~qR~Pr~R~-G~~HvvNN~y~~w~~Yaig-~s~~~~I~~ 347 (436)
+|++|.|.+...++++-.+. ..+|..|.|. + ....-.+.. ....+.+|.+.+...|+|. ........+
T Consensus 91 ~I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i~-~-~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I 160 (236)
T PF05048_consen 91 TISNNTISNNGYGIYLYGSS--------NNTISNNTIS-N-NGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTI 160 (236)
T ss_pred EEECCEecCCCceEEEeeCC--------ceEEECcEEe-C-CCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEE
Confidence 99999999877777665444 4688889885 2 333333333 4678899999988778887 445556777
Q ss_pred eccEEecC
Q 036607 348 QGNRFFAS 355 (436)
Q Consensus 348 egNyF~a~ 355 (436)
.+|+|.+.
T Consensus 161 ~~N~f~N~ 168 (236)
T PF05048_consen 161 YNNNFNNS 168 (236)
T ss_pred ECCCccCE
Confidence 89999333
No 24
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.03 E-value=0.0093 Score=63.76 Aligned_cols=142 Identities=18% Similarity=0.313 Sum_probs=95.9
Q ss_pred CeEEEEeeceEEEeCceEEeeCCceEEeeCCccE----EecCccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCC
Q 036607 153 PLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVH----IANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGK 228 (436)
Q Consensus 153 P~~IvF~~sg~I~L~~~L~V~SnkTI~G~ga~v~----I~~G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~ 228 (436)
..||.|..- ..|.|...=||+|+|..-- -. -..|.+.+++|+.|++|++++.
T Consensus 104 ~~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~r-P~~l~f~~~~nv~I~gitl~NS----------------- 159 (456)
T PLN03003 104 DQWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSR-PTALKFRSCNNLRLSGLTHLDS----------------- 159 (456)
T ss_pred cceEEEEcc------cceEEeccceEeCCchhhhhcccCC-ceEEEEEecCCcEEeCeEEecC-----------------
Confidence 358888632 2355555568999986311 11 1256778999999999999963
Q ss_pred CCCCCCCeeEeeCCceEEEeeeeecc-----ccCCceeeecCCccEEEeCceecCCCceeEecCCCCccCCCceeEEEEe
Q 036607 229 RGQSDGDAVSIFGSSNIWLDHLTLSQ-----AHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAF 303 (436)
Q Consensus 229 ~~~~dgDaIsI~gs~nVWIDHcSfS~-----~~DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~VTihh 303 (436)
..=.|.+.+++||.|++.++.. -.|| ||+. .|++|+|.+|.+...+...-+++.. .+|+|.+
T Consensus 160 ----p~w~i~i~~c~nV~i~~l~I~ap~~spNTDG-IDi~-~S~nV~I~n~~I~tGDDCIaiksgs-------~NI~I~n 226 (456)
T PLN03003 160 ----PMAHIHISECNYVTISSLRINAPESSPNTDG-IDVG-ASSNVVIQDCIIATGDDCIAINSGT-------SNIHISG 226 (456)
T ss_pred ----CcEEEEEeccccEEEEEEEEeCCCCCCCCCc-Eeec-CcceEEEEecEEecCCCeEEeCCCC-------ccEEEEe
Confidence 2346888899999999999975 3576 4764 6899999999999988888777542 2677777
Q ss_pred eEEcCCCC------CcCcc-ccceeEEEEcceEec
Q 036607 304 NRFDKGLV------QRMPC-VRFGFAHVVNNDYNQ 331 (436)
Q Consensus 304 N~F~~~~~------qR~Pr-~R~G~~HvvNN~y~~ 331 (436)
+.++++.. .+... --.-.++|-|+.+++
T Consensus 227 ~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~ 261 (456)
T PLN03003 227 IDCGPGHGISIGSLGKDGETATVENVCVQNCNFRG 261 (456)
T ss_pred eEEECCCCeEEeeccCCCCcceEEEEEEEeeEEEC
Confidence 77653211 11110 001246777777765
No 25
>PLN03010 polygalacturonase
Probab=97.03 E-value=0.02 Score=60.53 Aligned_cols=138 Identities=18% Similarity=0.248 Sum_probs=89.7
Q ss_pred cEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeecc-----ccCCceeeecCC
Q 036607 192 GIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQ-----AHDGLIDAIQAS 266 (436)
Q Consensus 192 gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~-----~~DGliDv~~gS 266 (436)
-|.+.+++||.|++|++++. ..=.|.+.+++||.|++..+.. -.||. |+. .|
T Consensus 159 ~l~~~~~~nv~v~gitl~ns---------------------p~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGi-Di~-~s 215 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDS---------------------PKNHISIKTCNYVAISKINILAPETSPNTDGI-DIS-YS 215 (409)
T ss_pred eEEEEeecCeEEeeeEEEcC---------------------CceEEEEeccccEEEEEEEEeCCCCCCCCCce-eee-cc
Confidence 47788999999999999963 2345888899999999999864 45664 764 58
Q ss_pred ccEEEeCceecCCCceeEecCCCCccCCCceeEEEEeeEEcCCC----CCcCcc-ccceeEEEEcceEecCcceeee---
Q 036607 267 TAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGL----VQRMPC-VRFGFAHVVNNDYNQWEMYAIG--- 338 (436)
Q Consensus 267 ~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~VTihhN~F~~~~----~qR~Pr-~R~G~~HvvNN~y~~w~~Yaig--- 338 (436)
++|+|++|.+...+...-+.+..+ ...|+...+..+++. ...... --.-.++|-|+.+++-. +++.
T Consensus 216 ~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~-~GirIKt 289 (409)
T PLN03010 216 TNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTT-NGARIKT 289 (409)
T ss_pred ceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCC-cceEEEE
Confidence 999999999999998888875421 235555455433210 001000 00125677777776532 2322
Q ss_pred --cCC--CceEEEeccEEecCCCC
Q 036607 339 --GLQ--GPTILSQGNRFFASNNQ 358 (436)
Q Consensus 339 --~s~--~~~I~~egNyF~a~~~~ 358 (436)
++. -..|.+++-.++....+
T Consensus 290 ~~G~~G~v~nItf~nI~m~~v~~p 313 (409)
T PLN03010 290 WQGGQGYARNISFENITLINTKNP 313 (409)
T ss_pred ecCCCEEEEEeEEEeEEEecCCcc
Confidence 111 13677888888876655
No 26
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.98 E-value=0.018 Score=60.33 Aligned_cols=175 Identities=16% Similarity=0.179 Sum_probs=124.8
Q ss_pred HHHHHhcCCCeEEEEeeceEEEeCceEEeeCCceEEeeCCccEEe--cCccEEEe---------ccccEEEECeEEeecc
Q 036607 144 LRHAVIQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIA--NGAGIMLQ---------FVKNVIIHGIHIHNIS 212 (436)
Q Consensus 144 LR~av~~~~P~~IvF~~sg~I~L~~~L~V~SnkTI~G~ga~v~I~--~G~gI~I~---------~a~NVIIrnL~i~~~~ 212 (436)
|-.++.+-. + |..+-+-+..+.++|.|.+..+|+|+||.|.|. ++.+|.+. +-.+|.+.|++|..-
T Consensus 57 le~~I~~ha-K-VaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA-K-VALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC-E-EEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 455555433 2 456666677788999999999999999988885 23346553 467999999999831
Q ss_pred CCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccccCCceeeecCCccEEEeCceecCCCceeEecCCCCcc
Q 036607 213 PCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFT 292 (436)
Q Consensus 213 ~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~~ 292 (436)
..--++-+...+++.|.-|+|....-=.|+... ...|..|+|..-.|++ .+.+
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~---~~~VrGC~F~~C~~gi-~~~~---- 186 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESWA---GGEVRGCTFYGCWKGI-VSRG---- 186 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEEcC---CcEEeeeEEEEEEEEe-ecCC----
Confidence 124677778899999999999998877777653 6789999998877775 3322
Q ss_pred CCCceeEEEEeeEEcCCCCCcCccccceeEEEEcceEecCcceeeecCCCceEEEeccEEecCCC
Q 036607 293 EDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLQGPTILSQGNRFFASNN 357 (436)
Q Consensus 293 ~d~~~~VTihhN~F~~~~~qR~Pr~R~G~~HvvNN~y~~w~~Yaig~s~~~~I~~egNyF~a~~~ 357 (436)
+.++++.+|.|.+ +.==. +-.|..++.+|...+-.-..+ .+.+-.+.+|.|..+..
T Consensus 187 ---~~~lsVk~C~Fek-C~igi--~s~G~~~i~hn~~~ec~Cf~l---~~g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 187 ---KSKLSVKKCVFEK-CVIGI--VSEGPARIRHNCASECGCFVL---MKGTGSIKHNMVCGPND 242 (386)
T ss_pred ---cceEEeeheeeeh-eEEEE--EecCCeEEecceecccceEEE---EcccEEEeccEEeCCCC
Confidence 3478889999973 32111 234788999999988653333 23345677899987765
No 27
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.95 E-value=0.0076 Score=61.33 Aligned_cols=108 Identities=28% Similarity=0.391 Sum_probs=75.8
Q ss_pred EEeeCCceEEeeCCcc-----E-----EecCccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEe
Q 036607 170 LIVQGSKTIDGRGAKV-----H-----IANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSI 239 (436)
Q Consensus 170 L~V~SnkTI~G~ga~v-----~-----I~~G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI 239 (436)
+.+...=||+|+|..- . ...-..|.+.+++|+.|++|++++. ..=.+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~ns---------------------p~w~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNS---------------------PFWHIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES----------------------SSESEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCC---------------------CeeEEEE
Confidence 4444446999998720 0 0001357888999999999999963 1225888
Q ss_pred eCCceEEEeeeeecc-----ccCCceeeecCCccEEEeCceecCCCceeEecCCCCccCCCceeEEEEeeEEc
Q 036607 240 FGSSNIWLDHLTLSQ-----AHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFD 307 (436)
Q Consensus 240 ~gs~nVWIDHcSfS~-----~~DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~VTihhN~F~ 307 (436)
..++||.|+|.++.. -.||. |+. ++++|+|.+|.|...+...-+.+... .|++.+++|.
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDGi-d~~-~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDGI-DID-SSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--SE-EEE-SEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EccCCeEEcceEEEecCCCCCcceE-EEE-eeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 899999999999864 35664 765 58999999999998888776664432 7888888886
No 28
>PLN02793 Probable polygalacturonase
Probab=96.78 E-value=0.016 Score=61.72 Aligned_cols=109 Identities=16% Similarity=0.276 Sum_probs=78.9
Q ss_pred eEEeeCCceEEeeCCccE-----Eec-------CccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCe
Q 036607 169 ELIVQGSKTIDGRGAKVH-----IAN-------GAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDA 236 (436)
Q Consensus 169 ~L~V~SnkTI~G~ga~v~-----I~~-------G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDa 236 (436)
.|.|...=||+|+|..-- +.+ -.-|.+.+++||.|++|++++. ..=.
T Consensus 144 ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS---------------------p~~~ 202 (443)
T PLN02793 144 HLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS---------------------QQMH 202 (443)
T ss_pred eEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC---------------------CCeE
Confidence 355554558888886310 110 1246778999999999999953 2345
Q ss_pred eEeeCCceEEEeeeeecc-----ccCCceeeecCCccEEEeCceecCCCceeEecCCCCccCCCceeEEEEeeEEc
Q 036607 237 VSIFGSSNIWLDHLTLSQ-----AHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFD 307 (436)
Q Consensus 237 IsI~gs~nVWIDHcSfS~-----~~DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~VTihhN~F~ 307 (436)
|.+.+++||.|++.++.. -.||. |+. .+++|+|++|.|...+....+.... .+|+|.++.+.
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGI-di~-~s~nV~I~n~~I~~gDDcIaik~~s-------~nI~I~n~~c~ 269 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGI-HIS-ASRGVVIKDSIVRTGDDCISIVGNS-------SRIKIRNIACG 269 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcE-eee-ccceEEEEeCEEeCCCCeEEecCCc-------CCEEEEEeEEe
Confidence 778899999999999965 45664 764 6899999999999988888876432 27888888775
No 29
>PLN02480 Probable pectinesterase
Probab=96.73 E-value=0.032 Score=57.73 Aligned_cols=119 Identities=17% Similarity=0.267 Sum_probs=79.3
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEe---eCCceEEeeCCc-cEEec---------CccEEEeccccEEEEC
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIV---QGSKTIDGRGAK-VHIAN---------GAGIMLQFVKNVIIHG 205 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V---~SnkTI~G~ga~-v~I~~---------G~gI~I~~a~NVIIrn 205 (436)
||.+||.+ +..+++||-..|+-+ +.|.| ++|+||.|.+.. ..|.. ++-++| .+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 78889854 233666766677654 66777 357899999854 34431 223444 689999999
Q ss_pred eEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecCC
Q 036607 206 IHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNH 279 (436)
Q Consensus 206 L~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H 279 (436)
|+|++..+.+ .....++-|+-+. .+.++-+.+|.|.-..|=|.+- ...--..+|++..+
T Consensus 139 LTf~Nta~~g------------~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C~IeG~ 198 (343)
T PLN02480 139 ISIRNDAPTG------------MAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY---KGRHYYHSCYIQGS 198 (343)
T ss_pred eEEEecCCCC------------CCCCCCCceEEEEecCCcEEEEeeEEecccceeEeC---CCCEEEEeCEEEee
Confidence 9999864211 0012334567664 6899999999999988888753 23455667777654
No 30
>PLN02197 pectinesterase
Probab=96.57 E-value=0.035 Score=61.21 Aligned_cols=151 Identities=23% Similarity=0.283 Sum_probs=93.1
Q ss_pred CCChhh--hhhccccccccccCCCcCCCCCeE---EEEcCCCCCCCCCCCCc---cHHHHHhc----CCCeEEEEeeceE
Q 036607 96 KENWAE--DRQALAGCALGFGSKATGGKGGKI---YEVTDPSDNDMENPKVG---TLRHAVIQ----KEPLWIIFAKDMN 163 (436)
Q Consensus 96 ~~~w~~--~r~~la~~a~GFG~~ttGG~gG~v---y~VT~~~d~~~~~p~pG---tLR~av~~----~~P~~IvF~~sg~ 163 (436)
.|.|-. +|+.|. +.+.|.++-||.++.+ ++|-- | |.| |+.+||.. ...++|||-+.|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~--d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVAK--D------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEcC--C------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 588865 477774 3556667777766643 33321 2 444 78888854 2346777777787
Q ss_pred EEeCceEEee---CCceEEeeCCccEEe-cC------ccE------EE-eccccEEEECeEEeeccCCCCCceecCCCCc
Q 036607 164 IKLQQELIVQ---GSKTIDGRGAKVHIA-NG------AGI------ML-QFVKNVIIHGIHIHNISPCSGGMIRDSVDHV 226 (436)
Q Consensus 164 I~L~~~L~V~---SnkTI~G~ga~v~I~-~G------~gI------~I-~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~ 226 (436)
.+ +.+.|. .|+||.|.|.+-+|. .. .|. ++ -.+++++.+||.|++-..
T Consensus 314 Y~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag------------- 378 (588)
T PLN02197 314 YN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAG------------- 378 (588)
T ss_pred EE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEEECCcEEEEEeEEEeCCC-------------
Confidence 43 566664 588999998754433 10 111 11 158999999999997531
Q ss_pred CCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecC
Q 036607 227 GKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSN 278 (436)
Q Consensus 227 g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~ 278 (436)
....-|+-+. .+...-+.+|+|.-..|=|.+- +..--..+|++..
T Consensus 379 ----~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~---~~Rqyy~~C~I~G 424 (588)
T PLN02197 379 ----PMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVN---NGRQFYRNIVVSG 424 (588)
T ss_pred ----CCCCceEEEEecCCcEEEEEeEEEecCcceEec---CCCEEEEeeEEEe
Confidence 1123455554 5899999999998877766542 2233444555543
No 31
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.57 E-value=0.071 Score=52.89 Aligned_cols=187 Identities=18% Similarity=0.227 Sum_probs=110.4
Q ss_pred ccHHHHHhcCCCeEEEEeeceEEEeC----ceEEeeCCceEEeeCCc-----cEEec--------Ccc-------EEEec
Q 036607 142 GTLRHAVIQKEPLWIIFAKDMNIKLQ----QELIVQGSKTIDGRGAK-----VHIAN--------GAG-------IMLQF 197 (436)
Q Consensus 142 GtLR~av~~~~P~~IvF~~sg~I~L~----~~L~V~SnkTI~G~ga~-----v~I~~--------G~g-------I~I~~ 197 (436)
-||.+|+.+-.|-.+|+=..|+.+-. -+|.+.+.+||.|.... +.+.+ |.+ ++|..
T Consensus 16 ~Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~ 95 (246)
T PF07602_consen 16 KTITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIIL 95 (246)
T ss_pred HHHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEe
Confidence 37888988877766666666776543 25788888888885431 22221 222 55556
Q ss_pred cccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccc-cCCceee----ecCCccEEEe
Q 036607 198 VKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQA-HDGLIDA----IQASTAITIS 272 (436)
Q Consensus 198 a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~-~DGliDv----~~gS~~VTIS 272 (436)
+++..|++++|++..+ ..+-||.|.++ +.-|..|+|+.+ .+|.... .....+++|+
T Consensus 96 ~~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~ 156 (246)
T PF07602_consen 96 ANNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVIS 156 (246)
T ss_pred cCCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEee
Confidence 7888888988886421 35678888776 888899999996 5553221 1234567788
Q ss_pred CceecCCCceeEecCCCCccCCCceeEEEEeeEEcCCCC------CcCccccce-eEEEEcceEecCcceeeecCC--Cc
Q 036607 273 NCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLV------QRMPCVRFG-FAHVVNNDYNQWEMYAIGGLQ--GP 343 (436)
Q Consensus 273 nn~f~~H~k~mLiG~sd~~~~d~~~~VTihhN~F~~~~~------qR~Pr~R~G-~~HvvNN~y~~w~~Yaig~s~--~~ 343 (436)
.|.+.....+.-+-... .. ..-.|-+|++..+.. +- |.+-.+ .-.+-||.+.+...|.+.... .-
T Consensus 157 GN~~~~~~~Gi~i~~~~-~~----~~n~I~NN~I~~N~~Gi~~~~~~-pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~ 230 (246)
T PF07602_consen 157 GNSIYFNKTGISISDNA-AP----VENKIENNIIENNNIGIVAIGDA-PDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQ 230 (246)
T ss_pred cceEEecCcCeEEEccc-CC----ccceeeccEEEeCCcCeEeeccC-CccccCCCCCCCCcEEecCcceeeEeccCCce
Confidence 88766433322221111 00 112345677653211 12 444332 234667888777777776633 24
Q ss_pred eEEEeccEEe
Q 036607 344 TILSQGNRFF 353 (436)
Q Consensus 344 ~I~~egNyF~ 353 (436)
++++.||-..
T Consensus 231 ~l~a~gN~ld 240 (246)
T PF07602_consen 231 TLYAVGNQLD 240 (246)
T ss_pred eEEEeCCccC
Confidence 7777887764
No 32
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.30 E-value=0.053 Score=57.22 Aligned_cols=168 Identities=21% Similarity=0.257 Sum_probs=104.9
Q ss_pred eEEEEeeceEEEeCceEEeeCCceEEeeCCcc------EEe-c----CccEEEeccccEEEECeEEeeccCCCCCceecC
Q 036607 154 LWIIFAKDMNIKLQQELIVQGSKTIDGRGAKV------HIA-N----GAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDS 222 (436)
Q Consensus 154 ~~IvF~~sg~I~L~~~L~V~SnkTI~G~ga~v------~I~-~----G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s 222 (436)
.||.|.. -..|.|...=||+|+|..- ... + -.-|.+..++||.|++|+|++.
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS----------- 176 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS----------- 176 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-----------
Confidence 4777741 1346666666888888621 000 0 1245677899999999999963
Q ss_pred CCCcCCCCCCCCCeeEeeCCceEEEeeeeecc-----ccCCceeeecCCccEEEeCceecCCCceeEecCCCCccCCCce
Q 036607 223 VDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQ-----AHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKM 297 (436)
Q Consensus 223 ~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~-----~~DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~ 297 (436)
..=.|.+..++||.|++.++.. -.||. |+. .+++|+|.+|.|...+...-++... .
T Consensus 177 ----------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDGi-di~-~s~nV~I~n~~I~~GDDcIaiksg~-------~ 237 (404)
T PLN02188 177 ----------KFFHIALVECRNFKGSGLKISAPSDSPNTDGI-HIE-RSSGVYISDSRIGTGDDCISIGQGN-------S 237 (404)
T ss_pred ----------CCeEEEEEccccEEEEEEEEeCCCCCCCCCcE-eee-CcccEEEEeeEEeCCCcEEEEccCC-------c
Confidence 2346888899999999999875 35664 764 5899999999999988888886432 1
Q ss_pred eEEEEeeEEcCCC------CCcCcc-ccceeEEEEcceEecCcceeeec---------CCCceEEEeccEEecCCCC
Q 036607 298 QVTVAFNRFDKGL------VQRMPC-VRFGFAHVVNNDYNQWEMYAIGG---------LQGPTILSQGNRFFASNNQ 358 (436)
Q Consensus 298 ~VTihhN~F~~~~------~qR~Pr-~R~G~~HvvNN~y~~w~~Yaig~---------s~~~~I~~egNyF~a~~~~ 358 (436)
+|++.++.+..+. ..+.+- -....+.+-|+.+.+-. +++.. +.-..|.+++-.++....+
T Consensus 238 nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~p 313 (404)
T PLN02188 238 QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFENIVMNNVTNP 313 (404)
T ss_pred cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEEeEEecCccce
Confidence 6788777764221 011010 01124667777776532 23221 1113566677766665543
No 33
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.01 E-value=0.084 Score=57.66 Aligned_cols=103 Identities=18% Similarity=0.201 Sum_probs=73.7
Q ss_pred cEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccccCC--------ce--e
Q 036607 192 GIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDG--------LI--D 261 (436)
Q Consensus 192 gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~DG--------li--D 261 (436)
++..+.++|+.|+||.|..-. ....|||-+..++||-|+-|.|+.+.|- +. +
T Consensus 263 ~~h~~~~~nl~~~nl~I~~~~------------------~~NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~ 324 (542)
T COG5434 263 TVHPVDCDNLTFRNLTIDANR------------------FDNTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKK 324 (542)
T ss_pred EEeeecccCceecceEEECCC------------------CCCCCccccccceeEEEeccEEecCCceEEeecccCCcccc
Confidence 566678999999999998421 1267999999999999999999985442 21 2
Q ss_pred eecCCccEEEeCceecCCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCccc
Q 036607 262 AIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCV 317 (436)
Q Consensus 262 v~~gS~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~VTihhN~F~~~~~qR~Pr~ 317 (436)
....+.+|+|++|+|..-.-+..+|+.. ..+...|++-.|.|. + ..|.=|+
T Consensus 325 ~~~~~~~i~i~~c~~~~ghG~~v~Gse~---~ggv~ni~ved~~~~-~-~d~GLRi 375 (542)
T COG5434 325 GYGPSRNIVIRNCYFSSGHGGLVLGSEM---GGGVQNITVEDCVMD-N-TDRGLRI 375 (542)
T ss_pred cccccccEEEecceecccccceEeeeec---CCceeEEEEEeeeec-c-Ccceeee
Confidence 3334578999999999644444555322 134567899999996 3 5666665
No 34
>PLN02176 putative pectinesterase
Probab=95.65 E-value=0.29 Score=50.68 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=77.5
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEEe---cC------ccEEEeccccEEEECe
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHIA---NG------AGIMLQFVKNVIIHGI 206 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I~---~G------~gI~I~~a~NVIIrnL 206 (436)
|+.+||.. +..+++||-..|+-+ +.|.|. +|+||.|.|.+-+|. .+ +-+.+ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 77888853 233567777778764 567773 589999998754433 11 12333 6899999999
Q ss_pred EEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecCC
Q 036607 207 HIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNH 279 (436)
Q Consensus 207 ~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H 279 (436)
.|++..+..+ ......+-|+-+. .+..+-+.+|.|.-..|=|.+- +..--..+|+++.+
T Consensus 130 T~~Nt~~~~~-----------~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIeG~ 189 (340)
T PLN02176 130 TFKNTYNIAS-----------NSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVISGG 189 (340)
T ss_pred EEEeCCCccC-----------CCCCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEEec
Confidence 9998643110 0011234455554 5789999999999888877763 33456666777654
No 35
>smart00656 Amb_all Amb_all domain.
Probab=95.56 E-value=0.57 Score=44.36 Aligned_cols=135 Identities=17% Similarity=0.134 Sum_probs=79.4
Q ss_pred CCceEEeeCCccEEecCccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCe-eEee-CCceEEEeeee
Q 036607 174 GSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDA-VSIF-GSSNIWLDHLT 251 (436)
Q Consensus 174 SnkTI~G~ga~v~I~~G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDa-IsI~-gs~nVWIDHcS 251 (436)
-|++|.+...... .++.+|.+.+++||+|.+..|....+. +. .....|+ +.+. ++.+|=|-.|.
T Consensus 45 rnl~i~~~~~~~~-~~~D~i~~~~~~~VwIDHct~s~~~~~------------~~-~~~~~D~~~di~~~s~~vTvs~~~ 110 (190)
T smart00656 45 RNLTIHDPKPVYG-SDGDAISIDGSSNVWIDHVSLSGCTVT------------GF-GDDTYDGLIDIKNGSTYVTISNNY 110 (190)
T ss_pred eCCEEECCccCCC-CCCCEEEEeCCCeEEEEccEeEcceec------------cC-CCCCCCccEEECcccccEEEECce
Confidence 5777776543211 135689999999999999999964211 11 1122344 4443 56666666666
Q ss_pred eccccCCceeeecCC------ccEEEeCceecCCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCcccc-ceeEEE
Q 036607 252 LSQAHDGLIDAIQAS------TAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVR-FGFAHV 324 (436)
Q Consensus 252 fS~~~DGliDv~~gS------~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~VTihhN~F~~~~~qR~Pr~R-~G~~Hv 324 (436)
|....-+++-....+ ..||+-+|+|.+.. +..+.- +.-++-+..|+|. +..+-.--++ .+.+.+
T Consensus 111 f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~-----~R~P~~---r~g~~hv~NN~~~-n~~~~~~~~~~~~~v~~ 181 (190)
T smart00656 111 FHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLR-----QRAPRV---RFGYVHVYNNYYT-GWTSYAIGGRMGATILS 181 (190)
T ss_pred EecCCEEEEEccCCCccccccceEEEECcEEcCcc-----cCCCcc---cCCEEEEEeeEEe-CcccEeEecCCCcEEEE
Confidence 654333333221111 26999999998632 111111 1116888999997 5543333333 258999
Q ss_pred EcceEec
Q 036607 325 VNNDYNQ 331 (436)
Q Consensus 325 vNN~y~~ 331 (436)
-||+|.+
T Consensus 182 E~N~F~~ 188 (190)
T smart00656 182 EGNYFEA 188 (190)
T ss_pred ECeEEEC
Confidence 9999986
No 36
>PLN02682 pectinesterase family protein
Probab=95.13 E-value=0.38 Score=50.37 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=75.6
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEe---eCCceEEeeCCccE-Eec----------C--------ccEEEe
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIV---QGSKTIDGRGAKVH-IAN----------G--------AGIMLQ 196 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V---~SnkTI~G~ga~v~-I~~----------G--------~gI~I~ 196 (436)
|+.+||.. +..+++||-..|+- .+.|.| ++|+||.|.|.+-+ |.. | +-+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y--~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGTY--REKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--eEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 67778753 22355666666764 466777 46899999987533 321 1 01222
Q ss_pred ccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCce
Q 036607 197 FVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCH 275 (436)
Q Consensus 197 ~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~ 275 (436)
.+++++.+||.|++..+.. .. ...+.-|+-+. .+.++-+.+|.|.-..|=|.+- ...--..+|+
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~---------~~---g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~ 225 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVP---------PP---GALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCY 225 (369)
T ss_pred ECCCeEEEeeEEEcccccC---------CC---CCCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeE
Confidence 6889999999999854210 00 01223455554 5899999999999988888762 3355667777
Q ss_pred ecCC
Q 036607 276 LSNH 279 (436)
Q Consensus 276 f~~H 279 (436)
+..+
T Consensus 226 IeG~ 229 (369)
T PLN02682 226 IEGS 229 (369)
T ss_pred Eccc
Confidence 7754
No 37
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=95.07 E-value=0.34 Score=53.29 Aligned_cols=98 Identities=17% Similarity=0.223 Sum_probs=64.8
Q ss_pred cHHHHHhc-----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEEe-c----C-cc--------EEEecccc
Q 036607 143 TLRHAVIQ-----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHIA-N----G-AG--------IMLQFVKN 200 (436)
Q Consensus 143 tLR~av~~-----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I~-~----G-~g--------I~I~~a~N 200 (436)
|+.+||.. ...+.|||-+.|+.+ +.+.|. .|+||.|.|..-+|. + + .| +.+ .+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCC
Confidence 77788853 133667777778754 556653 589999998764443 1 1 22 122 5899
Q ss_pred EEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCce
Q 036607 201 VIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLI 260 (436)
Q Consensus 201 VIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGli 260 (436)
++.+||.|++-.. ...+-|+-++ .+..+-+.+|.|.-..|=|.
T Consensus 332 f~a~~it~~Ntag-----------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy 375 (553)
T PLN02708 332 FMARDLTIQNTAG-----------------PDAHQAVAFRSDSDLSVIENCEFLGNQDTLY 375 (553)
T ss_pred eEEEeeEEEcCCC-----------------CCCCceEEEEecCCcEEEEeeeeeeccccce
Confidence 9999999997521 1123566665 68999999999977655443
No 38
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=94.88 E-value=0.34 Score=52.92 Aligned_cols=114 Identities=17% Similarity=0.202 Sum_probs=71.8
Q ss_pred cHHHHHhc-----CCCeEEEEeeceEEEeCceEEe---eCCceEEeeCCccEE-ec----CccE-------EEeccccEE
Q 036607 143 TLRHAVIQ-----KEPLWIIFAKDMNIKLQQELIV---QGSKTIDGRGAKVHI-AN----GAGI-------MLQFVKNVI 202 (436)
Q Consensus 143 tLR~av~~-----~~P~~IvF~~sg~I~L~~~L~V---~SnkTI~G~ga~v~I-~~----G~gI-------~I~~a~NVI 202 (436)
|+.+||.. ...+++||-+.|+.+ +.+.| .+|+||.|.|..-+| ++ +.|+ ..-.++|++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v~~~~F~ 316 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAAMGDGFI 316 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEEEcCCeE
Confidence 77888863 223677787788854 55666 369999999876444 31 1121 112689999
Q ss_pred EECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecC
Q 036607 203 IHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSN 278 (436)
Q Consensus 203 IrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~ 278 (436)
.+||.|++-.. ...+-|+-+. .+..+.+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 317 a~nitf~Ntag-----------------~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~---~~Rqyy~~C~I~G 373 (529)
T PLN02170 317 ARDITFVNSAG-----------------PNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTH---SKRQFYRETDITG 373 (529)
T ss_pred EEeeEEEecCC-----------------CCCCceEEEEecCCcEEEEeeeEeccCCcceeC---CCCEEEEeeEEcc
Confidence 99999997531 0123455554 5788999999998877666542 2233445555543
No 39
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.85 E-value=1.4 Score=45.97 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=68.0
Q ss_pred EEeeCCceEEeeCCccEEecCccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEee
Q 036607 170 LIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDH 249 (436)
Q Consensus 170 L~V~SnkTI~G~ga~v~I~~G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDH 249 (436)
|.+....|-++.-.+--|....||.|.++..+.|..-+|.+... .+....|+||++.++..+-|=-
T Consensus 100 I~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~--------------~r~~~rGnGI~vyNa~~a~V~~ 165 (408)
T COG3420 100 IFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD--------------LRVAERGNGIYVYNAPGALVVG 165 (408)
T ss_pred EEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc--------------cchhhccCceEEEcCCCcEEEc
Confidence 44445555555433222223568999999999999999986532 1335678999999999999999
Q ss_pred eeeccccCCceeeecCCccEEEeCceecC
Q 036607 250 LTLSQAHDGLIDAIQASTAITISNCHLSN 278 (436)
Q Consensus 250 cSfS~~~DGliDv~~gS~~VTISnn~f~~ 278 (436)
+.+|...||... ..|+.-+|+.|.|.+
T Consensus 166 ndisy~rDgIy~--~~S~~~~~~gnr~~~ 192 (408)
T COG3420 166 NDISYGRDGIYS--DTSQHNVFKGNRFRD 192 (408)
T ss_pred CccccccceEEE--cccccceecccchhh
Confidence 999999999764 346677788887775
No 40
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=94.65 E-value=0.74 Score=50.51 Aligned_cols=114 Identities=17% Similarity=0.223 Sum_probs=71.7
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEE-ecC----ccE-------EEeccccEEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHI-ANG----AGI-------MLQFVKNVII 203 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I-~~G----~gI-------~I~~a~NVII 203 (436)
|+.+||.. ...++|||-+.|+.+ +.+.|. .|+||.|.|..-+| .+. .|+ ..-.+++++.
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v~~~~F~a 323 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGRGFIA 323 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEEEcCCeEE
Confidence 67778854 234677777778653 455553 68999999875443 311 111 1126899999
Q ss_pred ECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecC
Q 036607 204 HGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSN 278 (436)
Q Consensus 204 rnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~ 278 (436)
+||.|++-.. ...+-|+-+. .+.++-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 324 ~nit~~Ntag-----------------~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~---~~rqyy~~C~I~G 379 (537)
T PLN02506 324 RDITFRNTAG-----------------PQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAH---SLRQFYRECEIYG 379 (537)
T ss_pred EeeEEEeCCC-----------------CCCCceEEEEecCCcEEEEcceeecccccceec---CCceEEEeeEEec
Confidence 9999997531 0123444443 5899999999998877766542 2234455555554
No 41
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=94.58 E-value=0.39 Score=52.69 Aligned_cols=113 Identities=18% Similarity=0.235 Sum_probs=74.0
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEEecC-----cc--------EEEeccccEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHIANG-----AG--------IMLQFVKNVI 202 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I~~G-----~g--------I~I~~a~NVI 202 (436)
|+.+||.. ...++|||-..|+.+ +.+.|. +|+||.|.|.+.+|.-+ .| +.+ .+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 77788853 345778888888754 566663 68999999986544322 12 223 589999
Q ss_pred EECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecC
Q 036607 203 IHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSN 278 (436)
Q Consensus 203 IrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~ 278 (436)
.+||.|++-... ..+-|+-+. .+..+-+-+|.|.-..|=|.+- +..--..+|+++.
T Consensus 321 a~nitf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~---~~Rqyy~~C~I~G 377 (541)
T PLN02416 321 ARDITIENTAGP-----------------EKHQAVALRVNADLVALYRCTINGYQDTLYVH---SFRQFYRECDIYG 377 (541)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCccEEEEcceEecccchhccC---CCceEEEeeEEee
Confidence 999999975311 123444443 5788999999998877766542 3344555555554
No 42
>PLN02304 probable pectinesterase
Probab=94.28 E-value=0.89 Score=47.85 Aligned_cols=128 Identities=20% Similarity=0.234 Sum_probs=81.0
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEe---eCCceEEeeCCccEE-ec--Cc---------cEEEeccccEEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIV---QGSKTIDGRGAKVHI-AN--GA---------GIMLQFVKNVII 203 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V---~SnkTI~G~ga~v~I-~~--G~---------gI~I~~a~NVII 203 (436)
|+.+||.. +..+++||-..|+- .+.|.| ++|+||.|.|..-++ .. .+ .-..-.++|++.
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~GvY--~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v~a~~F~a 166 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGIY--YEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVFASNFIA 166 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeEe--EEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEEECCCeEE
Confidence 78888854 23356677777764 466777 468999999975433 21 10 111125899999
Q ss_pred ECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecCCCce
Q 036607 204 HGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKA 282 (436)
Q Consensus 204 rnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H~k~ 282 (436)
+||.|++..+... + ....+-|+-+. .+..+-+.+|.|.-.+|=|.+- ...--..+|++..+-.-
T Consensus 167 ~nITf~Nta~~~~------~------g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIeG~VDF 231 (379)
T PLN02304 167 KNISFMNVAPIPK------P------GDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQGSIDF 231 (379)
T ss_pred EeeEEEecCCCCC------C------CCCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEcccccE
Confidence 9999998643110 0 11233455554 5899999999999999988763 33455677777754222
Q ss_pred eEecCC
Q 036607 283 ILLGAS 288 (436)
Q Consensus 283 mLiG~s 288 (436)
++|..
T Consensus 232 -IFG~g 236 (379)
T PLN02304 232 -IFGDA 236 (379)
T ss_pred -Eeccc
Confidence 35543
No 43
>PLN02432 putative pectinesterase
Probab=94.14 E-value=0.77 Score=46.71 Aligned_cols=121 Identities=17% Similarity=0.237 Sum_probs=76.5
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEe---eCCceEEeeCCccEE-ecC--------ccEEEeccccEEEECe
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIV---QGSKTIDGRGAKVHI-ANG--------AGIMLQFVKNVIIHGI 206 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V---~SnkTI~G~ga~v~I-~~G--------~gI~I~~a~NVIIrnL 206 (436)
|+.+||.. ...+++||-..|+- .+.|.| ++|+||.|.+..-+| ... +-+.+ .++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 67778753 22355666666754 466667 368999999865333 211 12222 6899999999
Q ss_pred EEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecCCCceeEe
Q 036607 207 HIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILL 285 (436)
Q Consensus 207 ~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H~k~mLi 285 (436)
.|++..+ ..+-|+-+. .+..+-+.+|.|.-..|=|.+- ...--..+|++..+=. +++
T Consensus 102 t~~Nt~g------------------~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~G~VD-FIF 159 (293)
T PLN02432 102 TIQNTFG------------------SSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIEGATD-FIC 159 (293)
T ss_pred EEEeCCC------------------CCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEEeccc-EEe
Confidence 9997531 123455554 5799999999999888888752 3345666777765422 234
Q ss_pred cCC
Q 036607 286 GAS 288 (436)
Q Consensus 286 G~s 288 (436)
|..
T Consensus 160 G~g 162 (293)
T PLN02432 160 GNA 162 (293)
T ss_pred cCc
Confidence 543
No 44
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=94.05 E-value=0.54 Score=51.12 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=66.1
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEEe-cCc----cE-EE------eccccEEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHIA-NGA----GI-ML------QFVKNVII 203 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I~-~G~----gI-~I------~~a~NVII 203 (436)
|+.+||.. ...+++||-+.|+. ++.+.|. +|+||.|.|.+-+|. ++. |. +. -.++++|.
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v~g~gF~A 288 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGVY--DEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVASNGDGFIG 288 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCee--EEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEEEcCCeEE
Confidence 67788853 23366777777864 3566774 689999999864443 111 11 11 15889999
Q ss_pred ECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCcee
Q 036607 204 HGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLID 261 (436)
Q Consensus 204 rnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliD 261 (436)
+||.|++... ...+-|+-+. .+...-+.+|+|.-..|=|.+
T Consensus 289 ~nitf~Ntag-----------------~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~ 330 (509)
T PLN02488 289 IDMCFRNTAG-----------------PAKGPAVALRVSGDMSVIYRCRIEGYQDALYP 330 (509)
T ss_pred EeeEEEECCC-----------------CCCCceEEEEecCCcEEEEcceeeccCcceee
Confidence 9999997531 1234566665 689999999999876665543
No 45
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=94.00 E-value=0.83 Score=50.15 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=64.9
Q ss_pred cHHHHHhc---CC----CeEEEEeeceEEEeCceEEee---CCceEEeeCCccEEe-c------C------ccEEEeccc
Q 036607 143 TLRHAVIQ---KE----PLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHIA-N------G------AGIMLQFVK 199 (436)
Q Consensus 143 tLR~av~~---~~----P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I~-~------G------~gI~I~~a~ 199 (436)
|+.+||.. .. -++|||-+.|+.+ +.|.|. .|+||.|.|.+-+|. + | +-+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 77788853 11 2677787788754 556663 689999999764433 1 1 11122 589
Q ss_pred cEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCce
Q 036607 200 NVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLI 260 (436)
Q Consensus 200 NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGli 260 (436)
++|.+||.|++-.. ....-|+-++ .+...-+.+|+|.-..|=|.
T Consensus 314 ~F~a~~it~~Ntag-----------------~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy 358 (538)
T PLN03043 314 RFVAVDVTFRNTAG-----------------PEKHQAVALRNNADLSTFYRCSFEGYQDTLY 358 (538)
T ss_pred CEEEEeeEEEECCC-----------------CCCCceEEEEEcCCcEEEEeeEEeccCcccc
Confidence 99999999997531 1223566665 57889999999987666543
No 46
>PLN02665 pectinesterase family protein
Probab=93.89 E-value=0.97 Score=47.39 Aligned_cols=129 Identities=15% Similarity=0.187 Sum_probs=80.4
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCcc-EEecC-----------ccEEEeccccEEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKV-HIANG-----------AGIMLQFVKNVII 203 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v-~I~~G-----------~gI~I~~a~NVII 203 (436)
|+.+||.. ...++|||-..|+-+ +.|.|. +|+||.|.+..- .|... +-+. -.+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~-v~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLI-VESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEE-EECCCeEE
Confidence 77888853 233667777778654 667774 578999998743 33311 1122 26899999
Q ss_pred ECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecCCCce
Q 036607 204 HGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKA 282 (436)
Q Consensus 204 rnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H~k~ 282 (436)
+||.|++..+.+.+ ...++-|+-+. .+..+-+.+|.|.-.+|=|.+- ...--..+|++..+=.-
T Consensus 159 ~nitf~Nta~~~~~------------~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~---~gr~yf~~CyIeG~VDF 223 (366)
T PLN02665 159 ANIIIKNSAPRPDG------------KRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDD---KGRHFFKDCYIEGTVDF 223 (366)
T ss_pred EeeEEEeCCCCcCC------------CCCCcceEEEEEcCCcEEEEcceeccccceeEeC---CCCEEEEeeEEeeccce
Confidence 99999986432111 01122444443 4788999999999988888763 23455667777654222
Q ss_pred eEecCCCC
Q 036607 283 ILLGASDT 290 (436)
Q Consensus 283 mLiG~sd~ 290 (436)
++|....
T Consensus 224 -IFG~g~a 230 (366)
T PLN02665 224 -IFGSGKS 230 (366)
T ss_pred -eccccce
Confidence 3555443
No 47
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=93.87 E-value=0.52 Score=51.81 Aligned_cols=100 Identities=16% Similarity=0.276 Sum_probs=65.8
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEEe-------cCcc-----EEEeccccEEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHIA-------NGAG-----IMLQFVKNVII 203 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I~-------~G~g-----I~I~~a~NVII 203 (436)
|+.+||.. ...++|||-+.|+. ++.+.|. .|+||.|.|.+.+|. +|.+ -..-.+++++.
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~~~~F~a 327 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGTY--KENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAAVGDGFIA 327 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEEECCceEE
Confidence 77788854 23467777777875 4566674 689999999765443 1211 01115899999
Q ss_pred ECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCcee
Q 036607 204 HGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLID 261 (436)
Q Consensus 204 rnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliD 261 (436)
+||.|++-.. ....-|+-+. .+..+-+.+|.|.-..|=|.+
T Consensus 328 ~nitf~Ntag-----------------~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 369 (548)
T PLN02301 328 QDIWFQNTAG-----------------PEKHQAVALRVSADQAVINRCRIDAYQDTLYA 369 (548)
T ss_pred EeeEEEECCC-----------------CCCCceEEEEecCCcEEEEeeeeeecccccee
Confidence 9999997531 0123455554 578999999999877665544
No 48
>PLN02634 probable pectinesterase
Probab=93.78 E-value=1.2 Score=46.67 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=74.4
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEe---eCCceEEeeCCccEEec-----------C--------ccEEEe
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIV---QGSKTIDGRGAKVHIAN-----------G--------AGIMLQ 196 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V---~SnkTI~G~ga~v~I~~-----------G--------~gI~I~ 196 (436)
|+.+||.. +..+++||-..|+- .+.|.| ++|+||.|.|...+|.- | +-+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~GvY--~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGFY--REKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCceE--EEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 56667743 22345566666774 456666 36899999987655430 1 11222
Q ss_pred ccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCce
Q 036607 197 FVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCH 275 (436)
Q Consensus 197 ~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~ 275 (436)
.+++++.+||.|++..+... . ....+-|+-+. .+.++-+.+|.|.-..|=|.+- ...--..+|+
T Consensus 147 ~a~~F~a~niTf~Nta~~~~---------~---g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~Cy 211 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPM---------P---GMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECY 211 (359)
T ss_pred ECCCeEEEeCeEEeCCccCC---------C---CCCCCceEEEEecCCcEEEEEeEEecccceeeeC---CCCEEEEeeE
Confidence 58999999999998643110 0 11233455554 5788999999999888887752 3345566677
Q ss_pred ecCC
Q 036607 276 LSNH 279 (436)
Q Consensus 276 f~~H 279 (436)
+..+
T Consensus 212 IeG~ 215 (359)
T PLN02634 212 IEGS 215 (359)
T ss_pred Eccc
Confidence 7654
No 49
>PLN02773 pectinesterase
Probab=93.57 E-value=1.3 Score=45.48 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=71.3
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccE-EecC----------------------cc
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVH-IANG----------------------AG 192 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~-I~~G----------------------~g 192 (436)
|+.+||.. ...+++||-..|+-+ +.|.|. .|+||.|++..-+ |... +-
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 67777743 223566666677643 667773 4799999886433 3211 11
Q ss_pred EEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEE
Q 036607 193 IMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITI 271 (436)
Q Consensus 193 I~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTI 271 (436)
+.+ .++|++.+||.|++..+. ..+-|+.+. .+..+-+.+|.|--..|=|.+- ...--+
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~---~gr~yf 155 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLH---YGKQYL 155 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEeC---CCCEEE
Confidence 222 689999999999975321 123455553 5788999999998877777652 224455
Q ss_pred eCceecCC
Q 036607 272 SNCHLSNH 279 (436)
Q Consensus 272 Snn~f~~H 279 (436)
.+|+++.+
T Consensus 156 ~~c~IeG~ 163 (317)
T PLN02773 156 RDCYIEGS 163 (317)
T ss_pred EeeEEeec
Confidence 56666543
No 50
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=93.55 E-value=1.1 Score=49.15 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=72.1
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccE-Eec------Ccc----EEE-eccccEEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVH-IAN------GAG----IML-QFVKNVII 203 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~-I~~------G~g----I~I-~~a~NVII 203 (436)
|+.+||.. ...+++||-..|+.+ +.+.|. .|+||.|.|.+-+ |.. |.+ =++ -.+++++.
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~a~~F~a 309 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGVKGKGFIA 309 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEEECCCEEE
Confidence 77788853 233666777778765 556664 5789999987533 321 110 011 15899999
Q ss_pred ECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecC
Q 036607 204 HGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSN 278 (436)
Q Consensus 204 rnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~ 278 (436)
+||.|++-.. ....-|+-+. .+..+-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 310 ~nitf~Ntag-----------------~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~---~~Rqyy~~C~IeG 365 (530)
T PLN02933 310 KDISFVNYAG-----------------PAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVH---SAKQFYRECDIYG 365 (530)
T ss_pred EeeEEEECCC-----------------CCCCceEEEEEcCCcEEEEEeEEEecccccccC---CCceEEEeeEEec
Confidence 9999997531 1123455554 5899999999998877766542 2234555555554
No 51
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=93.41 E-value=0.96 Score=50.82 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=90.6
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEEecC-----ccE-EE------eccccEEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHIANG-----AGI-ML------QFVKNVII 203 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I~~G-----~gI-~I------~~a~NVII 203 (436)
|+.+||.. ...++|||-+.|+. .+.+.|. .|+||.|.|.+-+|.-| .|+ +. -.+++++.
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v~g~~F~a 341 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAIVGDHFIA 341 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEEECCCeEE
Confidence 77888854 23366777777764 4566674 47899999876544311 121 11 15899999
Q ss_pred ECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeecccc-----------------CCceeeecC
Q 036607 204 HGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAH-----------------DGLIDAIQA 265 (436)
Q Consensus 204 rnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~-----------------DGliDv~~g 265 (436)
|||.|++-.. ....-|+-++ .+...-+.+|.|.-.+ .|.||++-|
T Consensus 342 ~nitf~Ntag-----------------~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 404 (670)
T PLN02217 342 KNIGFENTAG-----------------AIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFG 404 (670)
T ss_pred EeeEEEeCCC-----------------CCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEec
Confidence 9999997531 1223456664 5888999999996533 467787777
Q ss_pred CccEEEeCceecCC-----CceeEecCCCCccCCCceeEEEEeeEEc
Q 036607 266 STAITISNCHLSNH-----DKAILLGASDTFTEDKKMQVTVAFNRFD 307 (436)
Q Consensus 266 S~~VTISnn~f~~H-----~k~mLiG~sd~~~~d~~~~VTihhN~F~ 307 (436)
.-..-+++|.|.-- .+.++--++-. ..+....+.|+++-+.
T Consensus 405 ~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGfvf~~C~i~ 450 (670)
T PLN02217 405 DAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRESTGFVLQGCTIV 450 (670)
T ss_pred CceEEEEccEEEEccCCCCCceeEecCCCC-CCCCCceEEEEeeEEe
Confidence 77888888888631 12222211111 1123456888888876
No 52
>PLN02916 pectinesterase family protein
Probab=93.41 E-value=1.2 Score=48.55 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=71.2
Q ss_pred cHHHHHhc-------CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEEe-c------Ccc-----EEEecccc
Q 036607 143 TLRHAVIQ-------KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHIA-N------GAG-----IMLQFVKN 200 (436)
Q Consensus 143 tLR~av~~-------~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I~-~------G~g-----I~I~~a~N 200 (436)
|+.+||.. ...+++||-..|+.+ +.+.|. +|+||.|.|.+-+|. . |.+ -..-.+++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~ 278 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGVSGDG 278 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEEECCC
Confidence 67788843 234677777778654 566664 588999998754433 1 111 11125899
Q ss_pred EEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecC
Q 036607 201 VIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSN 278 (436)
Q Consensus 201 VIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~ 278 (436)
++.+||.|++-.+. ...-|+-+. .+...-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 279 F~A~nitf~Ntag~-----------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~---~~Rqyy~~C~I~G 337 (502)
T PLN02916 279 FWARDITFENTAGP-----------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFVH---SLRQFYRDCHIYG 337 (502)
T ss_pred EEEEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEeccCceeEeC---CCCEEEEecEEec
Confidence 99999999975311 123445554 5788999999998877766542 2233445555554
No 53
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=93.37 E-value=1.2 Score=49.28 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=64.4
Q ss_pred cHHHHHhc-C------CCeEEEEeeceEEEeCceEEee---CCceEEeeCCccE-Eec------Cc------cEEEeccc
Q 036607 143 TLRHAVIQ-K------EPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVH-IAN------GA------GIMLQFVK 199 (436)
Q Consensus 143 tLR~av~~-~------~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~-I~~------G~------gI~I~~a~ 199 (436)
|+.+||.. + .-+++|+-..|+.+ +.+.|. .|+||.|.|.+-+ |.+ |. -+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 77778853 1 22567777778754 556663 5889999987543 331 21 1222 689
Q ss_pred cEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCcee
Q 036607 200 NVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLID 261 (436)
Q Consensus 200 NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliD 261 (436)
+++.+||.|++... ...+-|+-+. ++...-+.+|.|.-..|=|.+
T Consensus 341 ~F~a~nitf~Ntag-----------------~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 386 (566)
T PLN02713 341 NFVAVNITFRNTAG-----------------PAKHQAVALRSGADLSTFYSCSFEAYQDTLYT 386 (566)
T ss_pred CeEEEeeEEEeCCC-----------------CCCCceEEEEecCCcEEEEeeeeccCCcceEE
Confidence 99999999997531 1123455554 678889999999876665543
No 54
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=93.32 E-value=1.1 Score=49.71 Aligned_cols=115 Identities=17% Similarity=0.262 Sum_probs=74.0
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEEecC-----ccE-EE------eccccEEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHIANG-----AGI-ML------QFVKNVII 203 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I~~G-----~gI-~I------~~a~NVII 203 (436)
|+.+||.. ...+++||-..|+.+ +.+.|. .|+||.|.|.+-+|.-+ .|+ +. -.+++++.
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v~~~~F~a 376 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVALGEGFMA 376 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEEEcCCEEE
Confidence 77888854 233677777778654 556664 58999999986444312 111 11 16899999
Q ss_pred ECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecCC
Q 036607 204 HGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNH 279 (436)
Q Consensus 204 rnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H 279 (436)
+||.|++... ...+-|+-+. .+...-+.+|.|.-..|=|.+- +..--..+|++...
T Consensus 377 ~nitf~Ntag-----------------~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~Gt 433 (596)
T PLN02745 377 KSMGFRNTAG-----------------PEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQ---THRQFYRSCVITGT 433 (596)
T ss_pred EeeEEEECCC-----------------CCCCceEEEEEcCCcEEEEeeEEeecccccccC---CCcEEEEeeEEEee
Confidence 9999998531 1123455554 5899999999998887776652 23345556666543
No 55
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=93.25 E-value=0.9 Score=50.38 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=65.9
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccE-EecCcc----E-EE------eccccEEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVH-IANGAG----I-ML------QFVKNVII 203 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~-I~~G~g----I-~I------~~a~NVII 203 (436)
|+.+||.. ...++|||-+.|+.+=+ .|.|. .|+||.|.|.+-+ |+++.. . +. -.+++++.
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~a 364 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFIA 364 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEEE
Confidence 67778854 23467777777876421 36664 5899999997644 332211 1 11 15899999
Q ss_pred ECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCcee
Q 036607 204 HGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLID 261 (436)
Q Consensus 204 rnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliD 261 (436)
+||.|++-.+ ....-|+-+. .+...-+.+|.|.-..|=|.+
T Consensus 365 ~~itf~Ntag-----------------~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~ 406 (587)
T PLN02484 365 RDMTFENWAG-----------------PAKHQAVALRVGADHAVVYRCNIIGYQDTLYV 406 (587)
T ss_pred EeeEEEECCC-----------------CCCCceEEEEecCCcEEEEeeeEeccCccccc
Confidence 9999997531 1123455554 588899999999876665544
No 56
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=93.15 E-value=1.1 Score=49.24 Aligned_cols=115 Identities=19% Similarity=0.246 Sum_probs=74.9
Q ss_pred cHHHHHhc-C-----CCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEE-ecCc----cE-EE------eccccE
Q 036607 143 TLRHAVIQ-K-----EPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHI-ANGA----GI-ML------QFVKNV 201 (436)
Q Consensus 143 tLR~av~~-~-----~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I-~~G~----gI-~I------~~a~NV 201 (436)
|+.+||.. + ..+++||-+.|+.+ +.+.|. +|+|+.|.|.+-+| .++. +. +. -.++++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v~~~~F 314 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGIEGLHF 314 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEEECCCe
Confidence 88889864 2 23667777778754 556663 69999999976443 3211 11 11 258999
Q ss_pred EEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecCC
Q 036607 202 IIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNH 279 (436)
Q Consensus 202 IIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H 279 (436)
+.+||.|++... ...+-|+-+. .+....+.+|.|.-..|=|.+- +..--..+|+++.+
T Consensus 315 ~a~nitf~Ntag-----------------~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~Gt 373 (539)
T PLN02995 315 IAKGITFRNTAG-----------------PAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVH---SQRQFYRECYIYGT 373 (539)
T ss_pred EEEeeEEEeCCC-----------------CCCCceEEEEEcCCceeEEcceEecccchhccC---CCceEEEeeEEeec
Confidence 999999997531 1234566665 6899999999999888877652 23345556666543
No 57
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=92.87 E-value=1.3 Score=48.43 Aligned_cols=114 Identities=15% Similarity=0.212 Sum_probs=70.9
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEE-ecC----ccE-EE------eccccEEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHI-ANG----AGI-ML------QFVKNVII 203 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I-~~G----~gI-~I------~~a~NVII 203 (436)
|+.+||.. ...+++||-+.|+.+ +.+.|. .|+||.|.|.+-+| ++. .|+ +. -.+++++.
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~F~a 297 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAVSGRGFIA 297 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEEECCCeEE
Confidence 77888853 223566777778654 566664 57899999875433 211 111 11 25899999
Q ss_pred ECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecC
Q 036607 204 HGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSN 278 (436)
Q Consensus 204 rnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~ 278 (436)
+||.|++-.+ ...+-|+-+. .+...-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 298 ~nitf~Ntag-----------------~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~---~~Rqyy~~C~I~G 353 (520)
T PLN02201 298 RDITFQNTAG-----------------PEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTH---TMRQFYRECRITG 353 (520)
T ss_pred EeeEEEECCC-----------------CCCCceEEEEEcCCcEEEEeeeeeccCCeeEeC---CCCEEEEeeEEee
Confidence 9999997531 1123455554 5789999999998877766542 2223344555544
No 58
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=92.28 E-value=1.8 Score=44.04 Aligned_cols=124 Identities=15% Similarity=0.235 Sum_probs=70.5
Q ss_pred ccHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEEecC-------------ccEEEeccccE
Q 036607 142 GTLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHIANG-------------AGIMLQFVKNV 201 (436)
Q Consensus 142 GtLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I~~G-------------~gI~I~~a~NV 201 (436)
-|+.+||.. ...+++||-..|+-+ +.|.|. +++||.|.|..-+|.-+ +-+.+ .++|+
T Consensus 13 ~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f 89 (298)
T PF01095_consen 13 TTIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDF 89 (298)
T ss_dssp SSHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-
T ss_pred cCHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-cccce
Confidence 367788864 234677777778764 667775 58999999875443212 11222 58999
Q ss_pred EEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccccCCceeeecCCccEEEeCceecCCCc
Q 036607 202 IIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDK 281 (436)
Q Consensus 202 IIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H~k 281 (436)
+++||.|++... . .....-||.+ .+.++.+.+|.|.-..|=|..- +...-+.+|++..+-.
T Consensus 90 ~~~nit~~Nt~g--------------~-~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG~vD 150 (298)
T PF01095_consen 90 TAENITFENTAG--------------P-SGGQAVALRV-SGDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEGNVD 150 (298)
T ss_dssp EEEEEEEEEHCS--------------G-SG----SEEE-T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEESEE
T ss_pred eeeeeEEecCCC--------------C-cccceeeeee-cCCcEEEEEeEEccccceeeec---cceeEEEeeEEEecCc
Confidence 999999998521 0 1123356666 4688999999999999977652 3456677888876422
Q ss_pred eeEecCC
Q 036607 282 AILLGAS 288 (436)
Q Consensus 282 ~mLiG~s 288 (436)
+++|..
T Consensus 151 -FIfG~~ 156 (298)
T PF01095_consen 151 -FIFGNG 156 (298)
T ss_dssp -EEEESS
T ss_pred -EEECCe
Confidence 245543
No 59
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=92.21 E-value=1.5 Score=48.69 Aligned_cols=116 Identities=21% Similarity=0.285 Sum_probs=73.8
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEEecCc-----cE-EE------eccccEEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHIANGA-----GI-ML------QFVKNVII 203 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I~~G~-----gI-~I------~~a~NVII 203 (436)
|+.+||.. ...++|||-+.|+.+ +.+.|. .|+||.|.|.+-+|.-|. |. +. -.+++++.
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v~~~~F~a 366 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLA 366 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEEECCCeEE
Confidence 77778853 234677777778643 556664 588999998764433121 10 11 15899999
Q ss_pred ECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccC-----------------CceeeecC
Q 036607 204 HGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHD-----------------GLIDAIQA 265 (436)
Q Consensus 204 rnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~D-----------------GliDv~~g 265 (436)
+||.|++-.. ....-|+-+. ++...-+-+|+|.-..| |.+|++-|
T Consensus 367 ~~itf~Ntag-----------------~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG 429 (587)
T PLN02313 367 RDITFQNTAG-----------------PSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFG 429 (587)
T ss_pred EeeEEEeCCC-----------------CCCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceecc
Confidence 9999997531 1123455554 57889999999976544 55565555
Q ss_pred CccEEEeCceec
Q 036607 266 STAITISNCHLS 277 (436)
Q Consensus 266 S~~VTISnn~f~ 277 (436)
.-.+-+++|.|.
T Consensus 430 ~a~avfq~c~i~ 441 (587)
T PLN02313 430 NAAAVLQDCDIN 441 (587)
T ss_pred ceeEEEEccEEE
Confidence 556666666664
No 60
>PLN02314 pectinesterase
Probab=92.02 E-value=1.7 Score=48.13 Aligned_cols=99 Identities=20% Similarity=0.280 Sum_probs=65.1
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEEecC-----ccE-EE------eccccEEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHIANG-----AGI-ML------QFVKNVII 203 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I~~G-----~gI-~I------~~a~NVII 203 (436)
|+.+||.. ...++|||-+.|+.+ +.+.|. .|+|+.|.|..-+|.-| .|. +. -.+++++.
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v~~~~F~a 369 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAAAGKGFIA 369 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEEEcCCeEE
Confidence 77888854 234677777778754 556663 58899999875443212 111 11 16899999
Q ss_pred ECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCce
Q 036607 204 HGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLI 260 (436)
Q Consensus 204 rnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGli 260 (436)
+||.|++... ....-|+-++ ++...-+.+|.|--..|=|.
T Consensus 370 ~~itf~Ntag-----------------~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy 410 (586)
T PLN02314 370 KDMGFINTAG-----------------AAKHQAVAFRSGSDMSVFYQCSFDAFQDTLY 410 (586)
T ss_pred EeeEEEECCC-----------------CCCCceEEEEecCCcEEEEeeEEEeccchhe
Confidence 9999997531 1223466664 68889999999987666544
No 61
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=91.98 E-value=2.1 Score=47.41 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=65.4
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccE-EecCc----c-E-EE------eccccEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVH-IANGA----G-I-ML------QFVKNVI 202 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~-I~~G~----g-I-~I------~~a~NVI 202 (436)
|+.+||.. ...+++||-..|+.+ +.+.|. .|+||.|.|.+-+ |.+.. | + +. -.+++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v~~~~F~ 350 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAINGDHFT 350 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEEEcCCEE
Confidence 78888854 233667777778654 556664 6899999987543 33110 1 1 11 1589999
Q ss_pred EECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCcee
Q 036607 203 IHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLID 261 (436)
Q Consensus 203 IrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliD 261 (436)
.+||.|++-.. ....-|+-++ .+...-+.+|.|.-..|=|.+
T Consensus 351 a~nitf~Ntag-----------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~ 393 (572)
T PLN02990 351 AKNIGFENTAG-----------------PEGHQAVALRVSADYAVFYNCQIDGYQDTLYV 393 (572)
T ss_pred EEeeEEEeCCC-----------------CCCCceEEEEEcCCcEEEEeeeEecccchhcc
Confidence 99999997531 1234566665 688899999999876665543
No 62
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=91.57 E-value=2 Score=47.50 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=64.2
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEee---CCceEEeeCCccEEec-------Cc------cEEEeccccEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIVQ---GSKTIDGRGAKVHIAN-------GA------GIMLQFVKNVI 202 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V~---SnkTI~G~ga~v~I~~-------G~------gI~I~~a~NVI 202 (436)
|+.+||.. +..++|||-..|+.+ +.+.|. .|+||.|.|..-+|.- |. -+.+ .+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeE
Confidence 77778854 233566777778754 556664 5789999987544431 11 1111 579999
Q ss_pred EECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCcee
Q 036607 203 IHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLID 261 (436)
Q Consensus 203 IrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliD 261 (436)
.|||.|++-.. ....-|+-+. .+..+-+.+|.|--..|=|.+
T Consensus 349 a~~itf~Ntag-----------------~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~ 391 (565)
T PLN02468 349 ARDMGFRNTAG-----------------PIKHQAVALMSSADLSVFYRCTMDAFQDTLYA 391 (565)
T ss_pred EEEEEEEeCCC-----------------CCCCceEEEEEcCCcEEEEEeEEEeccchhcc
Confidence 99999997531 1223455554 688999999999876665543
No 63
>PLN02497 probable pectinesterase
Probab=91.00 E-value=4.2 Score=42.15 Aligned_cols=121 Identities=15% Similarity=0.211 Sum_probs=74.9
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEe---eCCceEEeeCCcc-EEe--cCc------cEEEeccccEEEECe
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIV---QGSKTIDGRGAKV-HIA--NGA------GIMLQFVKNVIIHGI 206 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V---~SnkTI~G~ga~v-~I~--~G~------gI~I~~a~NVIIrnL 206 (436)
|+.+||.. ...+++||-..|+- ++.|.| ++++||.|+|.+- .|. .+. -+. -.++|++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~-v~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFS-TLADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEE-EecCCeEEEcc
Confidence 67777743 23355666666754 456666 3689999998753 232 111 222 26899999999
Q ss_pred EEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeCceecCC
Q 036607 207 HIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNH 279 (436)
Q Consensus 207 ~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H 279 (436)
.|++..+... .+ .....+-|+-+. .+..+-+.+|.|.-..|=|.+- ...--..+|++..+
T Consensus 123 T~~Nt~~~~~---------~~-~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~IeG~ 183 (331)
T PLN02497 123 TFANSYNFPS---------KG-NKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQGA 183 (331)
T ss_pred EEEeCCCCcc---------cc-CCCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEEec
Confidence 9998642100 00 001223455554 5889999999999988888752 33455666766653
No 64
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=90.69 E-value=1.6 Score=46.59 Aligned_cols=115 Identities=20% Similarity=0.238 Sum_probs=57.9
Q ss_pred CCCCeeEeeC------CceEEEeeeeecccc--CCceeeecCCccEEEeCceecCCCceeEecCCCCccCCCceeEEEEe
Q 036607 232 SDGDAVSIFG------SSNIWLDHLTLSQAH--DGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAF 303 (436)
Q Consensus 232 ~dgDaIsI~g------s~nVWIDHcSfS~~~--DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~VTihh 303 (436)
..+.+|.|-. .++.-|.|+-|..|. -|.|+++ |..-||++|.|.+..-.+-+=|.. .-|+..
T Consensus 182 NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~g 251 (425)
T PF14592_consen 182 NGGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEG 251 (425)
T ss_dssp S---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES
T ss_pred CCceeEEEecccccccccceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEec
Confidence 4566777732 367778888777764 4577765 667788899998866655555554 458888
Q ss_pred eEEcCCCCCc--Ccccc-ceeEE-EEcceEecCcc----------eeeecCC------CceEEEeccEEecCCC
Q 036607 304 NRFDKGLVQR--MPCVR-FGFAH-VVNNDYNQWEM----------YAIGGLQ------GPTILSQGNRFFASNN 357 (436)
Q Consensus 304 N~F~~~~~qR--~Pr~R-~G~~H-vvNN~y~~w~~----------Yaig~s~------~~~I~~egNyF~a~~~ 357 (436)
|+|- +...+ .+-+| +|.-| |+|||+++-.. +++-.+. -..+.+++|-|++...
T Consensus 252 N~Fi-Gng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~ 324 (425)
T PF14592_consen 252 NVFI-GNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKS 324 (425)
T ss_dssp -EEE-E-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SE
T ss_pred cEEe-cCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCC
Confidence 9987 55443 46666 35544 58999987532 2221111 1257888999988763
No 65
>PLN02671 pectinesterase
Probab=90.28 E-value=5.2 Score=41.97 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=73.2
Q ss_pred cHHHHHhc----CCCeEEEEeeceEEEeCceEEe---eCCceEEeeCC---ccEEec----------Cc--------cEE
Q 036607 143 TLRHAVIQ----KEPLWIIFAKDMNIKLQQELIV---QGSKTIDGRGA---KVHIAN----------GA--------GIM 194 (436)
Q Consensus 143 tLR~av~~----~~P~~IvF~~sg~I~L~~~L~V---~SnkTI~G~ga---~v~I~~----------G~--------gI~ 194 (436)
|+.+||.. ...+++||-..|+- .+.|.| ++++||.|.|. +..|.. |. -+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~GvY--~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGIY--REKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCceE--EEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 66777743 22355666666764 466777 36889999874 344441 10 112
Q ss_pred EeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCceeeecCCccEEEeC
Q 036607 195 LQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLIDAIQASTAITISN 273 (436)
Q Consensus 195 I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISn 273 (436)
+ .+++++.+||.|++..+... ....+-|+-+. .+.++-+.+|.|.-..|=|.+- ...--..+
T Consensus 151 v-~a~~F~a~nitfeNt~~~~~-------------g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~ 213 (359)
T PLN02671 151 I-ESDYFCATGITFENTVVAEP-------------GGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQ 213 (359)
T ss_pred E-ECCceEEEeeEEEcCCCCCC-------------CCCCccEEEEEEcCccEEEEcceEeccccccEeC---CCcEEEEe
Confidence 2 58999999999997532110 01223344443 4799999999999988888763 23456667
Q ss_pred ceecCC
Q 036607 274 CHLSNH 279 (436)
Q Consensus 274 n~f~~H 279 (436)
|++..+
T Consensus 214 CyIeG~ 219 (359)
T PLN02671 214 CYIQGS 219 (359)
T ss_pred cEEEEe
Confidence 777654
No 66
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=89.95 E-value=7.5 Score=37.08 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=68.6
Q ss_pred cCccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCe-eEee-CCceEEEeeeeeccccCCcee-----
Q 036607 189 NGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDA-VSIF-GSSNIWLDHLTLSQAHDGLID----- 261 (436)
Q Consensus 189 ~G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDa-IsI~-gs~nVWIDHcSfS~~~DGliD----- 261 (436)
++.+|.|.+++||+|.+..|....... .....|+ |.+. ++++|=|-+|-|......++-
T Consensus 74 ~~Dai~i~~~~nVWIDH~sfs~~~~~~--------------~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~ 139 (200)
T PF00544_consen 74 DGDAISIDNSSNVWIDHCSFSWGNFEC--------------NSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDS 139 (200)
T ss_dssp S--SEEEESTEEEEEES-EEEETTS-G--------------GGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTT
T ss_pred CCCeEEEEecccEEEeccEEecccccc--------------ccccCCceEEEEeCCceEEEEchhccccccccccCCCCC
Confidence 467899999999999999999762110 0111344 5664 577777777777664332221
Q ss_pred -eecCCccEEEeCceecCCCcee-EecCCCCccCCCceeEEEEeeEEcCCCCCcCccccc-eeEEEEcceE
Q 036607 262 -AIQASTAITISNCHLSNHDKAI-LLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRF-GFAHVVNNDY 329 (436)
Q Consensus 262 -v~~gS~~VTISnn~f~~H~k~m-LiG~sd~~~~d~~~~VTihhN~F~~~~~qR~Pr~R~-G~~HvvNN~y 329 (436)
.......||+-+|+|.++..=| ++. .-++-+..|+|. +..+..=.+|. +.+-+-||||
T Consensus 140 ~~~~~~~~vT~hhN~f~~~~~R~P~~r---------~G~~Hv~NN~~~-~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 140 NSTDRGLRVTFHHNYFANTNSRNPRVR---------FGYVHVYNNYYY-NWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp CGGGTTEEEEEES-EEEEEEE-TTEEC---------SCEEEEES-EEE-EECSESEEEETTEEEEEES-EE
T ss_pred ccccCCceEEEEeEEECchhhCCCccc---------ccEEEEEEeeeE-CCCCEEEEccCCeEEEEECcCC
Confidence 1112269999999997632111 221 126889999996 56666656653 5788888886
No 67
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=87.96 E-value=11 Score=40.34 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=73.8
Q ss_pred cHHHHHhc-----CCCeEEEEeeceEEEeCceEEe---eCCceEEeeCC---ccEEecC---------------------
Q 036607 143 TLRHAVIQ-----KEPLWIIFAKDMNIKLQQELIV---QGSKTIDGRGA---KVHIANG--------------------- 190 (436)
Q Consensus 143 tLR~av~~-----~~P~~IvF~~sg~I~L~~~L~V---~SnkTI~G~ga---~v~I~~G--------------------- 190 (436)
|+.+||.. ...+++||-..|+-+ +.|.| ++|+||.|.|. .+.|...
T Consensus 96 TIQaAIdAa~~~~~~~r~~I~Ik~GvY~--EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~~ 173 (422)
T PRK10531 96 TVQAAVDAAIAKRTNKRQYIAVMPGTYQ--GTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKYM 173 (422)
T ss_pred CHHHHHhhccccCCCceEEEEEeCceeE--EEEEeCCCCceEEEEecCCCCCceEEEecCcccccccccccccccccccc
Confidence 67778863 223666777777654 55666 36899999764 3445421
Q ss_pred -----------------ccE-------EEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceE
Q 036607 191 -----------------AGI-------MLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNI 245 (436)
Q Consensus 191 -----------------~gI-------~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nV 245 (436)
..+ ..-.+++++.+||.|++..+.. .....+-|+-+. .+..+
T Consensus 174 ~~~p~~y~~d~~~~~~~~~~gT~~SATv~v~ad~F~a~NLTf~Ntag~~-------------~~~~~~QAVALrv~GDra 240 (422)
T PRK10531 174 PGKPAWYMYDSCQSKRAATIGTLCSAVFWSQNNGLQLQNLTIENTLGDS-------------VDAGNHPAVALRTDGDKV 240 (422)
T ss_pred ccccccccccccccccCCCcCceeeEEEEEECCCEEEEeeEEEeCCCCC-------------CCCCcceeEEEEEcCCcE
Confidence 000 1125799999999999754210 001223455554 57899
Q ss_pred EEeeeeeccccCCceeeecC---------CccEEEeCceecCC
Q 036607 246 WLDHLTLSQAHDGLIDAIQA---------STAITISNCHLSNH 279 (436)
Q Consensus 246 WIDHcSfS~~~DGliDv~~g---------S~~VTISnn~f~~H 279 (436)
.+.+|.|--..|=|..-..+ ...--+.+|++..+
T Consensus 241 ~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~ 283 (422)
T PRK10531 241 QIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGD 283 (422)
T ss_pred EEEeeEEecccceeeeccccccccccccccccEEEEeCEEeec
Confidence 99999998888877652111 12355566666653
No 68
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=87.89 E-value=2.5 Score=46.55 Aligned_cols=133 Identities=20% Similarity=0.278 Sum_probs=84.4
Q ss_pred CCCeEEEEeeceEEEeCce---------E-Eee-CCceEEeeCCc-cEEecCccEEEeccccEEEECeEEeeccCCCCCc
Q 036607 151 KEPLWIIFAKDMNIKLQQE---------L-IVQ-GSKTIDGRGAK-VHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGM 218 (436)
Q Consensus 151 ~~P~~IvF~~sg~I~L~~~---------L-~V~-SnkTI~G~ga~-v~I~~G~gI~I~~a~NVIIrnL~i~~~~~~~~g~ 218 (436)
..|+.|.|...-.+.+... + .+. +|.||.+..-+ -++.+-.||.+..++||.|.+.+|.-
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt-------- 307 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT-------- 307 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec--------
Confidence 5789999987766655321 1 111 45555554211 01112348888899999999999973
Q ss_pred eecCCCCcCCCCCCCCCeeEee------------CCceEEEeeeeeccccCCceeee---cCCccEEEeCceecCCCcee
Q 036607 219 IRDSVDHVGKRGQSDGDAVSIF------------GSSNIWLDHLTLSQAHDGLIDAI---QASTAITISNCHLSNHDKAI 283 (436)
Q Consensus 219 i~~s~~~~g~~~~~dgDaIsI~------------gs~nVWIDHcSfS~~~DGliDv~---~gS~~VTISnn~f~~H~k~m 283 (436)
..|.|.|. -+++|||-||.|+.++-+++.-. .+-.+||+-+|.|.+-+.+.
T Consensus 308 --------------gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GL 373 (542)
T COG5434 308 --------------GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGL 373 (542)
T ss_pred --------------CCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCccee
Confidence 23444443 25789999999999888877633 34579999999999976665
Q ss_pred EecCCCCccCCCceeEEEEeeEE
Q 036607 284 LLGASDTFTEDKKMQVTVAFNRF 306 (436)
Q Consensus 284 LiG~sd~~~~d~~~~VTihhN~F 306 (436)
=|...+.-. .+..+|+++-|..
T Consensus 374 Rikt~~~~g-G~v~nI~~~~~~~ 395 (542)
T COG5434 374 RIKTNDGRG-GGVRNIVFEDNKM 395 (542)
T ss_pred eeeeecccc-eeEEEEEEecccc
Confidence 555443221 2234555555444
No 69
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=87.67 E-value=3 Score=40.02 Aligned_cols=88 Identities=23% Similarity=0.254 Sum_probs=59.7
Q ss_pred ccEEEeCceecCCC--ceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCcccc--ce-----e--EEEEcceEecCcce
Q 036607 267 TAITISNCHLSNHD--KAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVR--FG-----F--AHVVNNDYNQWEMY 335 (436)
Q Consensus 267 ~~VTISnn~f~~H~--k~mLiG~sd~~~~d~~~~VTihhN~F~~~~~qR~Pr~R--~G-----~--~HvvNN~y~~w~~Y 335 (436)
++|-|=||.+.+-. -..|+|...+++.+....|.||||.|.. -..+|... .| + .-+.||+|+.....
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~--tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYD--TGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeec--CCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 46778888888743 4557898777777777899999999983 45556554 33 2 36889999865433
Q ss_pred ee------e----cCCCceEEEeccEEecCC
Q 036607 336 AI------G----GLQGPTILSQGNRFFASN 356 (436)
Q Consensus 336 ai------g----~s~~~~I~~egNyF~a~~ 356 (436)
|| + ...+-+..+.+|.+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 33 2 112346677888887654
No 70
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=85.68 E-value=6.9 Score=40.36 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=75.3
Q ss_pred CCCeeEeeCCceEEEeeeeecccc-----CCceeeecCCccEEEeCceecCCCceeEecCCCCc--cCCCceeEEEEeeE
Q 036607 233 DGDAVSIFGSSNIWLDHLTLSQAH-----DGLIDAIQASTAITISNCHLSNHDKAILLGASDTF--TEDKKMQVTVAFNR 305 (436)
Q Consensus 233 dgDaIsI~gs~nVWIDHcSfS~~~-----DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~--~~d~~~~VTihhN~ 305 (436)
-+=++.|..+.||+|-..+|.... +-.|.+..++.+|=|-+|-|..|....---|.|.. .......|||-+|+
T Consensus 115 ~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~ 194 (345)
T COG3866 115 VGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNK 194 (345)
T ss_pred EeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeee
Confidence 356788888999999999998765 44567777889999999999886543111122321 22345689999999
Q ss_pred EcCCCCC--------cCcccccee--EEEEcceEecCcceeeecCCCceEEEeccEEecC
Q 036607 306 FDKGLVQ--------RMPCVRFGF--AHVVNNDYNQWEMYAIGGLQGPTILSQGNRFFAS 355 (436)
Q Consensus 306 F~~~~~q--------R~Pr~R~G~--~HvvNN~y~~w~~Yaig~s~~~~I~~egNyF~a~ 355 (436)
|..+-.+ -++. -|+ +-+-+|+|.|-.+.+-..+ -..+-+-+|||+.-
T Consensus 195 fhdh~Kssl~G~sD~~~~~--~~~~kvT~hhNyFkn~~qR~PriR-fG~vHvyNNYy~~~ 251 (345)
T COG3866 195 FHDHDKSSLLGSSDSSNYD--DGKYKVTIHHNYFKNLYQRGPRIR-FGMVHVYNNYYEGN 251 (345)
T ss_pred eecCCeeeeeccCCccccc--CCceeEEEeccccccccccCCceE-eeEEEEeccccccC
Confidence 9742211 1222 233 4557888887532211111 12466789999843
No 71
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=83.88 E-value=17 Score=33.50 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=31.6
Q ss_pred EEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccccCCceeee
Q 036607 201 VIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAI 263 (436)
Q Consensus 201 VIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~ 263 (436)
+-|+||.|...... .....++|.+..+++++|++|++.++..-.+.+.
T Consensus 94 ~~i~nl~i~~~~~~---------------~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~ 141 (225)
T PF12708_consen 94 IQIRNLTIDGNGID---------------PNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFN 141 (225)
T ss_dssp EEEEEEEEEETCGC---------------E-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEE
T ss_pred EEEEeeEEEccccc---------------CCCCceEEEEEeCCeEEEEeEEEEccCccEEEEE
Confidence 44999999853211 0112578888889999999999998755544543
No 72
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=83.10 E-value=22 Score=37.34 Aligned_cols=133 Identities=17% Similarity=0.276 Sum_probs=69.8
Q ss_pred ceEEeeCCceEEeeCCccEEec-CccEEEe-ccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEe-eCCce
Q 036607 168 QELIVQGSKTIDGRGAKVHIAN-GAGIMLQ-FVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSI-FGSSN 244 (436)
Q Consensus 168 ~~L~V~SnkTI~G~ga~v~I~~-G~gI~I~-~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI-~gs~n 244 (436)
..++|+--+|+-|.- .+++.+ |.|=.|. .+-++||++|++|+. |+. ...-+-+|-+ ..++.
T Consensus 45 g~~vInr~l~l~ge~-ga~l~g~g~G~~vtv~aP~~~v~Gl~vr~s-----g~~----------lp~m~agI~v~~~at~ 108 (408)
T COG3420 45 GNFVINRALTLRGEN-GAVLDGGGKGSYVTVAAPDVIVEGLTVRGS-----GRS----------LPAMDAGIFVGRTATG 108 (408)
T ss_pred ccEEEccceeecccc-ccEEecCCcccEEEEeCCCceeeeEEEecC-----CCC----------cccccceEEeccCccc
Confidence 445555555555552 223332 2233332 689999999999942 110 0112233444 24556
Q ss_pred EEEeeeeeccccCCceeeecCCccEEEeCceecC-----------------CCceeEecCCCCccCCCceeEEEEeeEEc
Q 036607 245 IWLDHLTLSQAHDGLIDAIQASTAITISNCHLSN-----------------HDKAILLGASDTFTEDKKMQVTVAFNRFD 307 (436)
Q Consensus 245 VWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~-----------------H~k~mLiG~sd~~~~d~~~~VTihhN~F~ 307 (436)
--|.||.+-.+.-|..= +++..+-|--|.+.. ...+...|..-++..|...-=|=+||.|.
T Consensus 109 A~Vr~N~l~~n~~Gi~l--~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~~ 186 (408)
T COG3420 109 AVVRHNDLIGNSFGIYL--HGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVFK 186 (408)
T ss_pred ceEEcccccccceEEEE--eccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcccccceec
Confidence 66666666555444321 233333443333331 23344456655666676656666788884
Q ss_pred CCCCCcCcccccee
Q 036607 308 KGLVQRMPCVRFGF 321 (436)
Q Consensus 308 ~~~~qR~Pr~R~G~ 321 (436)
..|+--||||.
T Consensus 187 ---gnr~~~~Rygv 197 (408)
T COG3420 187 ---GNRFRDLRYGV 197 (408)
T ss_pred ---ccchhheeeeE
Confidence 55667778773
No 73
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=73.73 E-value=63 Score=31.29 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=45.5
Q ss_pred CceEEEeeeeeccc-cCCceeee-----cCCccEEEeCceecCCCceeE--ecCCC-CccCCCceeEEEEeeEEcCCCCC
Q 036607 242 SSNIWLDHLTLSQA-HDGLIDAI-----QASTAITISNCHLSNHDKAIL--LGASD-TFTEDKKMQVTVAFNRFDKGLVQ 312 (436)
Q Consensus 242 s~nVWIDHcSfS~~-~DGliDv~-----~gS~~VTISnn~f~~H~k~mL--iG~sd-~~~~d~~~~VTihhN~F~~~~~q 312 (436)
+++|+|.|+.|..+ ....++.. .|-.+..|-||.|..-...-+ +-... .........+++..|.+. ++.+
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~-NT~~ 111 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIV-NTRK 111 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEe-eeee
Confidence 57999999999885 34444432 344577999999997443322 21111 112234667788888887 7887
Q ss_pred c
Q 036607 313 R 313 (436)
Q Consensus 313 R 313 (436)
|
T Consensus 112 r 112 (198)
T PF08480_consen 112 R 112 (198)
T ss_pred c
Confidence 7
No 74
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=56.66 E-value=22 Score=34.88 Aligned_cols=49 Identities=18% Similarity=0.149 Sum_probs=34.2
Q ss_pred CCCCeeEeeCCc-eEEEeeeeeccccCCceeeecCCccEEEeCceecCCCc
Q 036607 232 SDGDAVSIFGSS-NIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDK 281 (436)
Q Consensus 232 ~dgDaIsI~gs~-nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H~k 281 (436)
-..||+++.+.. .+.|.-.++..+.|-.|-.. +.-.++|++-+..++.|
T Consensus 94 VcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~N-g~Gtv~I~nF~a~d~GK 143 (215)
T PF03211_consen 94 VCEDAATFKGDGGTVTIIGGGARNASDKVFQHN-GGGTVTIKNFYAEDFGK 143 (215)
T ss_dssp -SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEEEEEE
T ss_pred cceeeeEEcCCCceEEEeCCcccCCCccEEEec-CceeEEEEeEEEcCCCE
Confidence 356888888776 88888888888888877754 44568888755444444
No 75
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=52.14 E-value=23 Score=25.09 Aligned_cols=40 Identities=33% Similarity=0.212 Sum_probs=22.5
Q ss_pred eeEeeCCceEEEeeeeeccccCCceeeecCCccEEEeCceec
Q 036607 236 AVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLS 277 (436)
Q Consensus 236 aIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~ 277 (436)
||.+..+++..|..+.++...|| |.+. .|.+-+|..|.|.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~G-I~~~-~s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYG-IYLT-DSSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCE-EEEE-eCCCCEeECCEEE
Confidence 45555666666666666666663 3332 3455556555554
No 76
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=45.57 E-value=88 Score=31.29 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=53.2
Q ss_pred eeCCceEEeeCCcc-EEecCccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeC------Cce
Q 036607 172 VQGSKTIDGRGAKV-HIANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFG------SSN 244 (436)
Q Consensus 172 V~SnkTI~G~ga~v-~I~~G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~g------s~n 244 (436)
..++.+|.|.+-.- .+..|.||.|..+ +..|+|-+|+++. .+||.+.+ ..+
T Consensus 95 ~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~ 152 (246)
T PF07602_consen 95 LANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGING 152 (246)
T ss_pred ecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccc
Confidence 34666777763211 1113668999666 9999999999652 34455543 234
Q ss_pred EEEeeeeeccccCCceeeec--CCccEEEeCceecCCCceeE
Q 036607 245 IWLDHLTLSQAHDGLIDAIQ--ASTAITISNCHLSNHDKAIL 284 (436)
Q Consensus 245 VWIDHcSfS~~~DGliDv~~--gS~~VTISnn~f~~H~k~mL 284 (436)
+.|.-+++....-|. ++.. ....-+|.||+|.+...++.
T Consensus 153 ~vI~GN~~~~~~~Gi-~i~~~~~~~~n~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 153 NVISGNSIYFNKTGI-SISDNAAPVENKIENNIIENNNIGIV 193 (246)
T ss_pred eEeecceEEecCcCe-EEEcccCCccceeeccEEEeCCcCeE
Confidence 556666666655553 2221 12224789999998655543
No 77
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=42.74 E-value=58 Score=23.02 Aligned_cols=42 Identities=26% Similarity=0.215 Sum_probs=32.2
Q ss_pred cEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccc
Q 036607 192 GIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQA 255 (436)
Q Consensus 192 gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~ 255 (436)
||.+..+++..|++=+|.+ ..|||.+..+++--|..+.++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~----------------------~~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN----------------------NSYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeC----------------------CCCEEEEEeCCCCEeECCEEEcC
Confidence 5777778777788877774 34699999988888888877653
No 78
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=41.28 E-value=49 Score=34.28 Aligned_cols=50 Identities=26% Similarity=0.470 Sum_probs=33.5
Q ss_pred ccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeeccccC
Q 036607 197 FVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHD 257 (436)
Q Consensus 197 ~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~~~D 257 (436)
+.+..||||+.-+++.|- |.....-|.-.+.|+|+.|..||..++-++.-
T Consensus 266 ngkhfvirnvkaknitpd-----------fskkagidnatvaiygcdnfvidni~mvnsag 315 (464)
T PRK10123 266 NGKHFVIRNIKAKNITPD-----------FSKKAGIDNATVAIYGCDNFVIDNIEMINSAG 315 (464)
T ss_pred CCcEEEEEeeeccccCCC-----------chhhcCCCcceEEEEcccceEEeccccccccc
Confidence 567788888888877653 22222334555778899999999887765543
No 79
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=36.38 E-value=3.3e+02 Score=27.82 Aligned_cols=142 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred EEEeCceEEeeCCceEEeeCCccEEecCccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCC
Q 036607 163 NIKLQQELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGS 242 (436)
Q Consensus 163 ~I~L~~~L~V~SnkTI~G~ga~v~I~~G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs 242 (436)
.|+-.+.++=-++++|....- +.+.=++..++||-|+|+.+. ||.+-+ .+
T Consensus 87 ~i~apK~fR~~~~i~L~nv~~-----~~A~Et~W~c~~i~l~nv~~~------------------------gdYf~m-~s 136 (277)
T PF12541_consen 87 VIQAPKMFRECSNITLENVDI-----PDADETLWNCRGIKLKNVQAN------------------------GDYFFM-NS 136 (277)
T ss_pred eccCchHhhcccCcEEEeeEe-----CCCcccCEEeCCeEEEeEEEe------------------------ceEeee-ec
Q ss_pred ceEEEeeeeecc--ccCCceeee------------cCCccEEEeCceecCCCceeEec-CCCCccCCCceeEEEEeeEEc
Q 036607 243 SNIWLDHLTLSQ--AHDGLIDAI------------QASTAITISNCHLSNHDKAILLG-ASDTFTEDKKMQVTVAFNRFD 307 (436)
Q Consensus 243 ~nVWIDHcSfS~--~~DGliDv~------------~gS~~VTISnn~f~~H~k~mLiG-~sd~~~~d~~~~VTihhN~F~ 307 (436)
.||-|||..+.. +.||.=++. -.+.||||.++.+.+-+ +| +|. ++|+.++..
T Consensus 137 ~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDAFWn~eNVtVyDS~i~GEY----LgW~Sk--------NltliNC~I- 203 (277)
T PF12541_consen 137 ENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDAFWNCENVTVYDSVINGEY----LGWNSK--------NLTLINCTI- 203 (277)
T ss_pred cceEEeceEEeCCEEeeceeeEEEEccEEecccccccCCceEEEcceEeeeE----EEEEcC--------CeEEEEeEE-
Q ss_pred CCCCCcCccccceeEEEEcceEec----CcceeeecCCCceEEEecc
Q 036607 308 KGLVQRMPCVRFGFAHVVNNDYNQ----WEMYAIGGLQGPTILSQGN 350 (436)
Q Consensus 308 ~~~~qR~Pr~R~G~~HvvNN~y~~----w~~Yaig~s~~~~I~~egN 350 (436)
.+-.|.|=--.+.+.|.-+.+ ++.-.+.+.-.+.|.+.-|
T Consensus 204 ---~g~QpLCY~~~L~l~nC~~~~tdlaFEyS~v~A~I~~~I~SVKN 247 (277)
T PF12541_consen 204 ---EGTQPLCYCDNLVLENCTMIDTDLAFEYSNVDADIKGPIDSVKN 247 (277)
T ss_pred ---eccCccEeecceEEeCcEeecceeeeeeccccEEEEcceeeecC
No 80
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=34.42 E-value=17 Score=31.08 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=5.3
Q ss_pred CCcccchhhhHHHH
Q 036607 1 MELAGLRLIFLFSF 14 (436)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (436)
|- +|..||+.+||
T Consensus 1 Ma-SK~~llL~l~L 13 (95)
T PF07172_consen 1 MA-SKAFLLLGLLL 13 (95)
T ss_pred Cc-hhHHHHHHHHH
Confidence 55 44333333333
No 81
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.95 E-value=28 Score=35.79 Aligned_cols=18 Identities=28% Similarity=0.669 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 036607 26 AEVNEVWRRRAEEAMQTT 43 (436)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ 43 (436)
..|||||+++.+|+++..
T Consensus 22 ~DFdeFW~~~l~e~~~~~ 39 (321)
T COG3458 22 DDFDEFWKKTLEEARKVP 39 (321)
T ss_pred CcHHHHHHHHHHHHhcCC
Confidence 469999999999988754
No 82
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=31.01 E-value=2.9e+02 Score=29.57 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=56.0
Q ss_pred ccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCC---CCCCCeeEeeCCceEEEeeeeeccccCCceeeecCCc
Q 036607 191 AGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRG---QSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQAST 267 (436)
Q Consensus 191 ~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~---~~dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~ 267 (436)
.|+.+....+++||+-.|.+.. |.--+....-..|+ -.-.-||.-.+...+=|-||.|..|.=|.+. ..
T Consensus 137 ~g~~f~~~t~~~~hgC~F~gf~----g~cl~~~~~~~VrGC~F~~C~~gi~~~~~~~lsVk~C~FekC~igi~s----~G 208 (386)
T PF01696_consen 137 SGVVFHANTNTLFHGCSFFGFH----GTCLESWAGGEVRGCTFYGCWKGIVSRGKSKLSVKKCVFEKCVIGIVS----EG 208 (386)
T ss_pred ceeEEEecceEEEEeeEEecCc----ceeEEEcCCcEEeeeEEEEEEEEeecCCcceEEeeheeeeheEEEEEe----cC
Confidence 3667778899999999998753 11111000000000 0011223333455666788888887766633 23
Q ss_pred cEEEeCceecCCCceeEecCCCCccCCCceeEEEEeeEEc
Q 036607 268 AITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFD 307 (436)
Q Consensus 268 ~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~VTihhN~F~ 307 (436)
..+|++|-|.+-.-..|++. .-+|.||.|-
T Consensus 209 ~~~i~hn~~~ec~Cf~l~~g----------~g~i~~N~v~ 238 (386)
T PF01696_consen 209 PARIRHNCASECGCFVLMKG----------TGSIKHNMVC 238 (386)
T ss_pred CeEEecceecccceEEEEcc----------cEEEeccEEe
Confidence 67888888887665555543 3467777775
No 83
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=26.75 E-value=3e+02 Score=24.84 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=44.7
Q ss_pred cccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEeeCCceEEEeeeeecc---ccCCceeeecCCccE-EEeC
Q 036607 198 VKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQ---AHDGLIDAIQASTAI-TISN 273 (436)
Q Consensus 198 a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~gs~nVWIDHcSfS~---~~DGliDv~~gS~~V-TISn 273 (436)
..++-|+|.++...+--..+ +.--.-...+-|.+.|......+|-=|.-++ +..|.||+..+...| ||.|
T Consensus 14 ~~~l~i~Na~L~~GKfy~~~------~kd~eis~~~v~~~~i~~~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyW 87 (131)
T PF06355_consen 14 SGDLKIKNAQLSWGKFYRDG------NKDDEISPDDVNGIVIPPGGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYW 87 (131)
T ss_pred CccEEEEccEeccCccccCC------CcCCEeCccccCceEecCCCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEE
Confidence 34788888888865432111 1100112355678888777778888888765 578889988766555 6654
Q ss_pred c
Q 036607 274 C 274 (436)
Q Consensus 274 n 274 (436)
.
T Consensus 88 d 88 (131)
T PF06355_consen 88 D 88 (131)
T ss_pred e
Confidence 3
No 84
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=25.99 E-value=60 Score=35.39 Aligned_cols=61 Identities=30% Similarity=0.478 Sum_probs=41.4
Q ss_pred HHhcCCCeEEEEeeceE---EEeCceEEeeCCceEEeeCCccEEec-CccEEEeccccEEEECeEEeeccCC
Q 036607 147 AVIQKEPLWIIFAKDMN---IKLQQELIVQGSKTIDGRGAKVHIAN-GAGIMLQFVKNVIIHGIHIHNISPC 214 (436)
Q Consensus 147 av~~~~P~~IvF~~sg~---I~L~~~L~V~SnkTI~G~ga~v~I~~-G~gI~I~~a~NVIIrnL~i~~~~~~ 214 (436)
.+++.+ +||-+|. |+-.+.-.+.-||--+||+.++-|.+ |.||.- +|-|+||--|++..|.
T Consensus 452 c~E~Ne----IFDNaMagVwIKTds~PtlrRNKI~dgRdgGicifngGkGlle---~neif~Nalit~S~ps 516 (625)
T KOG1777|consen 452 CLEDNE----IFDNAMAGVWIKTDSNPTLRRNKIYDGRDGGICIFNGGKGLLE---HNEIFRNALITDSAPS 516 (625)
T ss_pred cccccc----chhhhhcceEEecCCCcceeecceecCCCCcEEEecCCceeee---chhhhhccccccCChh
Confidence 345555 6776664 55455566678999999988877764 456654 7888888777665543
No 85
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=25.33 E-value=21 Score=27.07 Aligned_cols=19 Identities=42% Similarity=0.919 Sum_probs=12.7
Q ss_pred CccccccCCChhhhhhccc
Q 036607 89 IDKCWRCKENWAEDRQALA 107 (436)
Q Consensus 89 id~cwr~~~~w~~~r~~la 107 (436)
-|+|.||...|+-.|-+-|
T Consensus 20 yd~ci~cqgkwagkrgkca 38 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCA 38 (55)
T ss_dssp HHHH--TTGGGTT-HHHHH
T ss_pred hhHHheecceeccccCcch
Confidence 4899999999998875543
No 86
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=25.13 E-value=42 Score=34.36 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=14.7
Q ss_pred chhhHHHHHHHHHHHHHHhh
Q 036607 25 IAEVNEVWRRRAEEAMQTTE 44 (436)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~ 44 (436)
-+.||+||+++.+|+++...
T Consensus 21 P~DFd~FW~~~l~e~~~~p~ 40 (320)
T PF05448_consen 21 PADFDAFWKKTLAELAAVPL 40 (320)
T ss_dssp -TTHHHHHHHHHHHHHTS--
T ss_pred CccHHHHHHHHHHHHhcCCC
Confidence 35799999999999876533
No 87
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=22.73 E-value=2.1e+02 Score=31.52 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=33.7
Q ss_pred ccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEee-CCceEEEeeeeeccccCCcee
Q 036607 197 FVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIF-GSSNIWLDHLTLSQAHDGLID 261 (436)
Q Consensus 197 ~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI~-gs~nVWIDHcSfS~~~DGliD 261 (436)
.+++++.+||.|++-.. . ...-|+-+. .+.++-+.+|.|.-..|=|.+
T Consensus 268 ~~~~F~a~nitf~Ntag-~----------------~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~ 316 (497)
T PLN02698 268 TGDGFIARDIGFKNAAG-P----------------KGEQAIALSITSDHSVLYRCSIAGYQDTLYA 316 (497)
T ss_pred ECCCeEEEeeEEEECCC-C----------------CCCceEEEEecCCcEEEEcceeecccchhee
Confidence 68999999999997531 1 112344443 578899999999876665544
No 88
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=22.03 E-value=7.7e+02 Score=24.30 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=29.5
Q ss_pred CCCeeEeeCCceEEEeeeeeccccCCceeeecCCccEEEeCceecC-CCceeE
Q 036607 233 DGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSN-HDKAIL 284 (436)
Q Consensus 233 dgDaIsI~gs~nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~-H~k~mL 284 (436)
..|+|...+ +..|+.+-+.+-.+-.+.++..+..++|...-+.+ .+|++-
T Consensus 74 ~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q 124 (215)
T PF03211_consen 74 QADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQ 124 (215)
T ss_dssp -TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEE
T ss_pred CcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEE
Confidence 468999988 45555555555555556776655577777766654 455543
Done!