Query 036608
Match_columns 565
No_of_seqs 395 out of 1495
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 05:37:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 99.8 5.8E-22 2E-26 183.5 7.2 131 369-512 49-181 (185)
2 3by4_A OTU1, ubiquitin thioest 99.8 1.5E-20 5.2E-25 178.9 8.7 121 376-512 18-139 (212)
3 3phu_A RNA-directed RNA polyme 99.7 4.1E-18 1.4E-22 161.5 8.5 124 378-514 31-161 (219)
4 3phx_A RNA-directed RNA polyme 99.7 4.1E-18 1.4E-22 158.3 7.6 123 378-513 31-160 (185)
5 1tff_A Ubiquitin thiolesterase 99.5 4.8E-14 1.6E-18 136.1 9.8 99 406-515 133-233 (234)
6 2zfy_A Ubiquitin thioesterase 99.3 5.3E-12 1.8E-16 122.0 7.4 94 407-511 137-233 (234)
7 4dhi_B Ubiquitin thioesterase 99.1 8E-11 2.7E-15 115.0 9.1 101 405-517 170-278 (284)
8 4ddg_A Ubiquitin-conjugating e 99.0 2.4E-10 8.2E-15 119.3 7.8 96 405-511 300-398 (399)
9 3dkb_A Tumor necrosis factor, 98.7 7.2E-08 2.5E-12 95.2 12.4 131 381-513 115-283 (390)
10 3zrh_A Ubiquitin thioesterase 98.5 3.8E-07 1.3E-11 91.5 9.4 125 382-515 193-351 (454)
11 2ezd_A High mobility group pro 64.6 4.9 0.00017 23.4 2.3 9 301-309 5-13 (26)
12 2l0z_A Glycoprotein G2; zinc-b 22.6 32 0.0011 22.6 1.1 16 217-232 21-36 (42)
13 2fcj_A Small toprim domain pro 20.8 80 0.0027 26.2 3.6 40 11-52 41-83 (119)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.85 E-value=5.8e-22 Score=183.48 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=95.3
Q ss_pred cCccc-ccccccccccCCCCCchHHHHHHHhhcCcchHHHHHHHHHHHHHhcccchhhhhcchhhHHHHHhhccccCCCC
Q 036608 369 FPFGL-RPYICGVSDVVADGNCGFRAVANLIGIGEDSWAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLHSLLYFENNP 447 (565)
Q Consensus 369 ~~~~l-~~~~~~~~~v~gdG~C~fraia~~l~~~~~~~~~vR~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~ 447 (565)
+-+.| +..++.+++|+|||||+|||||+||.++++.|..||+.++++|++++++|.+|+++ .|++|++.| .
T Consensus 49 ~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~--~~e~Y~~~m------~ 120 (185)
T 3pfy_A 49 FEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTE--DFTTYINRK------R 120 (185)
T ss_dssp HHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC--------------------
T ss_pred HHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHh------h
Confidence 44444 68889999999999999999999999999999999999999999999999999964 699999999 5
Q ss_pred CcCCcccCCCchhhhccccceeEEEEeCCc-cccccCCcCCCCCCCCCceEEEEEecCCceEeeec
Q 036608 448 GREYWMTMPEIGHIIASKYNVVLLHISDVL-NLTFLPLRSIPLSRSSHKIIAIGFVNRNHFIEVFM 512 (565)
Q Consensus 448 ~~~~W~~~~~~g~~iA~~y~~pi~~~s~~~-~~t~~p~~~~p~~~~~~~~i~l~~~~~~Hf~sl~~ 512 (565)
.++.|++.+.+ .++|+.|+++|++++... ...+|+-. ..+ ..++|+|+|+.++||+||.-
T Consensus 121 ~~~~WGg~iEL-~AlS~~~~v~I~V~~~~~~~i~i~~g~--~~~--~~~~I~L~Y~~~~HYnSv~~ 181 (185)
T 3pfy_A 121 KNNCHGNHIEM-QAMAEMYNRPVEVYQYSTEPINTFHGI--HQN--EDEPIRVSYHRNIHYNSVVN 181 (185)
T ss_dssp -----CCHHHH-HHHHHHHTSCEEEESSCSSCSEEECTT--SCC--TTSCEEEEEETTTEEEEEEC
T ss_pred CCCccchHHHH-HHHHHhhCCcEEEEECCCCCeEEecCc--cCC--CCCEEEEEECCCCCcccccC
Confidence 66889888776 689999999999998543 23333211 111 25899999999999999974
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.82 E-value=1.5e-20 Score=178.88 Aligned_cols=121 Identities=20% Similarity=0.212 Sum_probs=102.0
Q ss_pred ccccccccCCCCCchHHHHHHHhhcCcchHHHHHHHHHHHHHhcccchhhhhcchhhHHHHHhhccccCCCCCcCCcccC
Q 036608 376 YICGVSDVVADGNCGFRAVANLIGIGEDSWAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLHSLLYFENNPGREYWMTM 455 (565)
Q Consensus 376 ~~~~~~~v~gdG~C~fraia~~l~~~~~~~~~vR~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~W~~~ 455 (565)
-++.+++|+|||||+|||||+|| ++++.|..||+.++++|++|+++|.+++-+ ..|++|++.| ..++.|++.
T Consensus 18 ~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~-~~~e~Y~~~m------~~~~~WGg~ 89 (212)
T 3by4_A 18 NVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILD-KPNKDYAQWI------LKMESWGGA 89 (212)
T ss_dssp SEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHT-SCHHHHHHHT------TSTTSCCCH
T ss_pred CCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcC-CCHHHHHHHh------cCCCEEccH
Confidence 46789999999999999999999 788999999999999999999999766643 5899999999 667899888
Q ss_pred CCchhhhccccceeEEEEeCC-ccccccCCcCCCCCCCCCceEEEEEecCCceEeeec
Q 036608 456 PEIGHIIASKYNVVLLHISDV-LNLTFLPLRSIPLSRSSHKIIAIGFVNRNHFIEVFM 512 (565)
Q Consensus 456 ~~~g~~iA~~y~~pi~~~s~~-~~~t~~p~~~~p~~~~~~~~i~l~~~~~~Hf~sl~~ 512 (565)
+.+ ++||..|++||++++.. .....|+ +.. .+++|+|+|. |+||+||++
T Consensus 90 iEL-~Als~~~~~~I~V~~~~~~~~~~~~----~~~--~~~~I~L~Y~-g~HYdsl~~ 139 (212)
T 3by4_A 90 IEI-GIISDALAVAIYVVDIDAVKIEKFN----EDK--FDNYILILFN-GIHYDSLTM 139 (212)
T ss_dssp HHH-HHHHHHHTCEEEEEETTTTEEEEES----TTT--CSEEEEEEEC-SSCEEEEEE
T ss_pred HHH-HHHHHHHCCCEEEEECCCCCeEEeC----CCC--CCCeEEEEEc-CCcceEEec
Confidence 877 59999999999999853 3333332 222 2588999997 899999999
No 3
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.73 E-value=4.1e-18 Score=161.53 Aligned_cols=124 Identities=14% Similarity=0.147 Sum_probs=96.1
Q ss_pred ccccccCCCCCchHHHHHHHhhcC-cch-----HHHHHHHHHHHHHhcccchhhhhcchhhHHHHHhhccccCCCCCcCC
Q 036608 378 CGVSDVVADGNCGFRAVANLIGIG-EDS-----WAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLHSLLYFENNPGREY 451 (565)
Q Consensus 378 ~~~~~v~gdG~C~fraia~~l~~~-~~~-----~~~vR~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 451 (565)
..|+.|+|||||+|||||+||+++ ++. |..||+.++++|++|++++ +. +..|++|++.| ..++.
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~~--~~--~~~feeY~~~m------~~~g~ 100 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEAR--LV--GLSLEDYLKRM------LSDNE 100 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHHH--HH--CCCHHHHHHHH------HSTTC
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhhh--hc--CCCHHHHHHHh------cCCCc
Confidence 557788999999999999999998 555 8999999999999999982 22 45799999999 56688
Q ss_pred cccCCCchhhhccccceeEEEEeCCcc-ccccCCcCCCCCCCCCceEEEEEecCCceEeeecCC
Q 036608 452 WMTMPEIGHIIASKYNVVLLHISDVLN-LTFLPLRSIPLSRSSHKIIAIGFVNRNHFIEVFMLP 514 (565)
Q Consensus 452 W~~~~~~g~~iA~~y~~pi~~~s~~~~-~t~~p~~~~p~~~~~~~~i~l~~~~~~Hf~sl~~~~ 514 (565)
|++...+ .++|..|+++|++++.... .+......++... .++|+|+|.+++||++|...+
T Consensus 101 WGG~iEL-~AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~~--~~~I~L~Y~g~~HYdSL~~~~ 161 (219)
T 3phu_A 101 WGSTLEA-SMLAKEMGITIIIWTVAASDEVEAGIKFGDGDV--FTAVNLLHSGQTHFDALRILP 161 (219)
T ss_dssp CCCHHHH-HHHHHHTTCCEEEEEESSSSBEEEEEEESSCCT--TTSEEEEEETTTEEEEEEECT
T ss_pred cCCHHHH-HHHHHHhCCCEEEEEecCCCCceeEEEecCCCC--CCeEEEEECCCcCchhheECC
Confidence 8887776 5899999999988863322 0111111123332 578999998779999999754
No 4
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.72 E-value=4.1e-18 Score=158.32 Aligned_cols=123 Identities=13% Similarity=0.113 Sum_probs=95.3
Q ss_pred ccccccCCCCCchHHHHHHHhhcC-cch-----HHHHHHHHHHHHHhcccchhhhhcchhhHHHHHhhccccCCCCCcCC
Q 036608 378 CGVSDVVADGNCGFRAVANLIGIG-EDS-----WAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLHSLLYFENNPGREY 451 (565)
Q Consensus 378 ~~~~~v~gdG~C~fraia~~l~~~-~~~-----~~~vR~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 451 (565)
..|+.|+|||||+|||||+||+++ ++. |..||+.++++|++|++++ + .+..|++|++.| ..++.
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~~--~--~~~~~~~Y~~~m------~~~~~ 100 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEAR--L--VGLSLEDYLKRM------LSDNE 100 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTHH--H--HCCCHHHHHHHH------TSTTC
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHhh--h--cCCCHHHHHHHh------hCCCc
Confidence 456778999999999999999998 666 9999999999999999982 2 245799999999 66788
Q ss_pred cccCCCchhhhccccceeEEEEeCCccccccCC-cCCCCCCCCCceEEEEEecCCceEeeecC
Q 036608 452 WMTMPEIGHIIASKYNVVLLHISDVLNLTFLPL-RSIPLSRSSHKIIAIGFVNRNHFIEVFML 513 (565)
Q Consensus 452 W~~~~~~g~~iA~~y~~pi~~~s~~~~~t~~p~-~~~p~~~~~~~~i~l~~~~~~Hf~sl~~~ 513 (565)
|++..+. .++|..|+++|++++......++.. ..++... .++|+|+|..++||++|.+.
T Consensus 101 WGg~iEL-~Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~~--~~~I~L~Y~g~~HYdsl~~~ 160 (185)
T 3phx_A 101 WGSTLEA-SMLAKEMGITIIIWTVAASDEVEAGIKFGDGDV--FTAVNLLHSGQTHFDALRIL 160 (185)
T ss_dssp CCBHHHH-HHHHHHHCCCEEEEEC--CCBCCEEEEESSCCT--TTSEEEEEETTTEEEEEEEC
T ss_pred cCcHHHH-HHHHHHHCCcEEEEEecCCCCceEEEEcCCCCC--CCEEEEEECCCcCchhceEC
Confidence 9888776 5899999999998874322211111 1123332 57899999877999999975
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.49 E-value=4.8e-14 Score=136.12 Aligned_cols=99 Identities=5% Similarity=-0.039 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcccchhhhhcchhhHHHHHh-hccccCCCCCcCCcccCCCchhhhccccceeEEEEeCCccc-cccC
Q 036608 406 AQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLH-SLLYFENNPGREYWMTMPEIGHIIASKYNVVLLHISDVLNL-TFLP 483 (565)
Q Consensus 406 ~~vR~~~~~~l~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~W~~~~~~g~~iA~~y~~pi~~~s~~~~~-t~~p 483 (565)
..+|.....+|++|+++|.+|++++..+++++. .+ .+++.|.+...+ .+||+++++||.++....+. .+-+
T Consensus 133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~v------e~~~~~~~~iei-~ALa~aL~v~I~V~~~d~~~~~~~~ 205 (234)
T 1tff_A 133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEV------EPMATECDHIQI-TALSQALSIALQVEYVDEMDTALNH 205 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHT------SSTTCCCCHHHH-HHHHHHHTCCEEEEECC-------C
T ss_pred HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHh------hhhhcccccHHH-HHHHHHhCCCEEEEEcCCCCCcccc
Confidence 457888899999999999999977668999999 67 677889887766 58999999999888654332 1211
Q ss_pred CcCCCCCCCCCceEEEEEecCCceEeeecCCC
Q 036608 484 LRSIPLSRSSHKIIAIGFVNRNHFIEVFMLPA 515 (565)
Q Consensus 484 ~~~~p~~~~~~~~i~l~~~~~~Hf~sl~~~~~ 515 (565)
... |.+. .|.|+|+|.. .||++|+.+++
T Consensus 206 ~~~-~~~~--~~~I~LlY~p-gHYdily~~~~ 233 (234)
T 1tff_A 206 HVF-PEAA--TPSVYLLYKT-SHYNILYAADK 233 (234)
T ss_dssp CCC-CCCS--SCSEEEEEET-TEEEEEEECCC
T ss_pred ccC-CCCC--CCeEEEEECC-CCceecccCCC
Confidence 222 2333 5789999985 59999997654
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.26 E-value=5.3e-12 Score=121.99 Aligned_cols=94 Identities=12% Similarity=-0.037 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcccchhhhhcchhhHHHHHh-hccccCCCCCcCCcccCCCchhhhccccceeEEEEeCCcccc--ccC
Q 036608 407 QVRKDLVIELQSHFNDYKRVFEYAGRAEEVLH-SLLYFENNPGREYWMTMPEIGHIIASKYNVVLLHISDVLNLT--FLP 483 (565)
Q Consensus 407 ~vR~~~~~~l~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~W~~~~~~g~~iA~~y~~pi~~~s~~~~~t--~~p 483 (565)
.+|.....+|++|+++|.+|+.++..+++++. .+ .+++.|.+...+ .+||+++++||.++....+.. +-+
T Consensus 137 ~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~v------e~~~~~~~~i~i-~ALa~al~v~I~V~~~d~~~~~~v~~ 209 (234)
T 2zfy_A 137 YLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEV------EPMCKESDHIHI-IALAQALSVSIQVEYMDRGEGGTTNP 209 (234)
T ss_dssp HHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHT------SSTTCCCCHHHH-HHHHHHHTCCEEEEECC-CCSSCCEE
T ss_pred HHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHh------hhHhhcCCHHHH-HHHHHHhCCCEEEEEcCCCCCCcccc
Confidence 56777778999999999999987778999997 57 667888887666 589999999998876433321 111
Q ss_pred CcCCCCCCCCCceEEEEEecCCceEeee
Q 036608 484 LRSIPLSRSSHKIIAIGFVNRNHFIEVF 511 (565)
Q Consensus 484 ~~~~p~~~~~~~~i~l~~~~~~Hf~sl~ 511 (565)
... |.+. .|.|+|+|.. .||++|+
T Consensus 210 ~~f-~~~~--~p~I~LlY~p-gHYdiLy 233 (234)
T 2zfy_A 210 HIF-PEGS--EPKVYLLYRP-GHYDILY 233 (234)
T ss_dssp EEE-STTC--CCSEEEEEET-TEEEEEE
T ss_pred eeC-CCCC--CCeEEEEECC-CCcccCC
Confidence 111 2333 5789999985 5999987
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.14 E-value=8e-11 Score=115.01 Aligned_cols=101 Identities=7% Similarity=-0.028 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhcccchhhhhcchhhHHHHHh-hccccCCCCCcCCcccCCCchhhhccccceeEEEEeCCcc-----
Q 036608 405 WAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLH-SLLYFENNPGREYWMTMPEIGHIIASKYNVVLLHISDVLN----- 478 (565)
Q Consensus 405 ~~~vR~~~~~~l~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~W~~~~~~g~~iA~~y~~pi~~~s~~~~----- 478 (565)
...+|.....+|+.|+++|.+|+.+...+++||. .+ .++++|.+...+. +||+++++||.+...+.+
T Consensus 170 v~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eV------e~~~~e~d~leI~-ALa~aL~v~I~V~ylDrs~g~~v 242 (284)
T 4dhi_B 170 LMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEI------EPMWKDADHLAIN-SLIKAAGTRVRIEYMDRTAAPNG 242 (284)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHT------SSTTCCCCHHHHH-HHHHHTTCCEEEEESSGGGCTTS
T ss_pred HHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhc------eehhhcccHHHHH-HHHHHhCCcEEEEEecCCCCCCC
Confidence 3456778888999999999999987678999998 67 6788998887774 899999999966532211
Q ss_pred -ccc-cCCcCCCCCCCCCceEEEEEecCCceEeeecCCCCC
Q 036608 479 -LTF-LPLRSIPLSRSSHKIIAIGFVNRNHFIEVFMLPASP 517 (565)
Q Consensus 479 -~t~-~p~~~~p~~~~~~~~i~l~~~~~~Hf~sl~~~~~~p 517 (565)
... ||-... ...|.|.|.|- +.||..|+.+++-|
T Consensus 243 ~~h~~fp~~~~----~~~p~I~LLYr-pgHYDILY~~~p~~ 278 (284)
T 4dhi_B 243 GWHYDIPSDDQ----QIAPEITLLYR-PGHYDVIYKKDSTE 278 (284)
T ss_dssp SSEEEESCCCS----CCCCSEEEEEE-TTEEEEEEECC---
T ss_pred cccccCCCCCC----CCCCEEEEeec-CCCccccccCCCCc
Confidence 111 454211 11377999998 57999999887433
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.03 E-value=2.4e-10 Score=119.30 Aligned_cols=96 Identities=14% Similarity=-0.010 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhcccchhhhhcchhhHHHHHh-hccccCCCCCcCCcccCCCchhhhccccceeEEEEe-CC-ccccc
Q 036608 405 WAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLH-SLLYFENNPGREYWMTMPEIGHIIASKYNVVLLHIS-DV-LNLTF 481 (565)
Q Consensus 405 ~~~vR~~~~~~l~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~W~~~~~~g~~iA~~y~~pi~~~s-~~-~~~t~ 481 (565)
...+|.....+|++|+++|.+|+.+...+++++. .+ .+++.|.+...+ .+||+++|++|.++- ++ .....
T Consensus 300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~v------e~~~~e~d~l~I-~ALa~al~v~I~V~yld~~~~~~v 372 (399)
T 4ddg_A 300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEV------EPMCKESDHIHI-IALAQALSVSIQVEYMDRGEGGTT 372 (399)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHT------SSTTCCBCHHHH-HHHHHHHTCCCEEEECSCCSSSCC
T ss_pred HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhc------eeHHhhCcHHHH-HHHHHHcCCcEEEEEcCCCCCCcc
Confidence 4557888889999999999999987678999999 66 678899887777 489999999996653 22 11111
Q ss_pred cCCcCCCCCCCCCceEEEEEecCCceEeee
Q 036608 482 LPLRSIPLSRSSHKIIAIGFVNRNHFIEVF 511 (565)
Q Consensus 482 ~p~~~~p~~~~~~~~i~l~~~~~~Hf~sl~ 511 (565)
-+... |.+. .|.|+|+|. +.||+.|+
T Consensus 373 ~~~~~-~~~~--~~~I~LLYr-PgHYDiLY 398 (399)
T 4ddg_A 373 NPHIF-PEGS--EPKVYLLYR-PGHYDILY 398 (399)
T ss_dssp CEEET-TTTC--CCCCEEEEE-TBEEEEEE
T ss_pred ceeeC-CCCC--CCEEEEEEc-CCccccCC
Confidence 11211 3333 578999998 56999987
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.73 E-value=7.2e-08 Score=95.20 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=92.6
Q ss_pred cccCCCCCchHHHHHHHhhcCcchHHHHHHHHHHHHHhccc-chhh-----------hhc-----c----hhhHHHHHhh
Q 036608 381 SDVVADGNCGFRAVANLIGIGEDSWAQVRKDLVIELQSHFN-DYKR-----------VFE-----Y----AGRAEEVLHS 439 (565)
Q Consensus 381 ~~v~gdG~C~fraia~~l~~~~~~~~~vR~~~~~~l~~~~~-~y~~-----------~~~-----~----~~~~~~~~~~ 439 (565)
....|||||+.+|++..+.+-.|.-..+|+.|..-|++... .|.. +.. + .+.++.+++.
T Consensus 115 L~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~Iv~~ 194 (390)
T 3dkb_A 115 LKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLIKM 194 (390)
T ss_dssp BCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHHHHH
T ss_pred EEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999987542 2211 000 1 3567888877
Q ss_pred ccccCCCCCcCCcccCCC--chhhhccccceeEEEEeC--------C-------ccccccCCcCCCCCCCCCceEEEEEe
Q 036608 440 LLYFENNPGREYWMTMPE--IGHIIASKYNVVLLHISD--------V-------LNLTFLPLRSIPLSRSSHKIIAIGFV 502 (565)
Q Consensus 440 l~~~~~~~~~~~W~~~~~--~g~~iA~~y~~pi~~~s~--------~-------~~~t~~p~~~~p~~~~~~~~i~l~~~ 502 (565)
........+.+.=+.-.+ |-++||+...||||+|.. | .+.+|+|+..+|..... .||+|||-
T Consensus 195 Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~r-sPI~LgY~ 273 (390)
T 3dkb_A 195 ASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYR-YPIVLGYD 273 (390)
T ss_dssp TSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCS-SCEEEEEC
T ss_pred hCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccC-CceEEEec
Confidence 755432222222111222 556699999999999952 1 14689999987766543 68999998
Q ss_pred cCCceEeeecC
Q 036608 503 NRNHFIEVFML 513 (565)
Q Consensus 503 ~~~Hf~sl~~~ 513 (565)
. +||-+|...
T Consensus 274 s-~HFsaLV~m 283 (390)
T 3dkb_A 274 S-HHFVPLVTL 283 (390)
T ss_dssp S-SCEEEEEEB
T ss_pred c-Cceeeeeec
Confidence 5 799999863
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.46 E-value=3.8e-07 Score=91.54 Aligned_cols=125 Identities=18% Similarity=0.081 Sum_probs=88.1
Q ss_pred ccCCCCCchHHHHHHHhhcCcchHHHHHHHHHHHHHhccc-chhhh----------hc-----ch----hhHHHHHhhcc
Q 036608 382 DVVADGNCGFRAVANLIGIGEDSWAQVRKDLVIELQSHFN-DYKRV----------FE-----YA----GRAEEVLHSLL 441 (565)
Q Consensus 382 ~v~gdG~C~fraia~~l~~~~~~~~~vR~~~~~~l~~~~~-~y~~~----------~~-----~~----~~~~~~~~~l~ 441 (565)
...|||||+.+|++-.|.+-.|....+|+.|...|++... .|... ++ ++ ++++.++....
T Consensus 193 ~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~iv~~As 272 (454)
T 3zrh_A 193 WNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFILSLAS 272 (454)
T ss_dssp CCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred eecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999999999999986433 22221 11 11 34556665553
Q ss_pred ccCCCCCcCCcccCCCchhhhccccceeEEEEeC-------C-------ccccccCCcCCCCCCCCCceEEEEEecCCce
Q 036608 442 YFENNPGREYWMTMPEIGHIIASKYNVVLLHISD-------V-------LNLTFLPLRSIPLSRSSHKIIAIGFVNRNHF 507 (565)
Q Consensus 442 ~~~~~~~~~~W~~~~~~g~~iA~~y~~pi~~~s~-------~-------~~~t~~p~~~~p~~~~~~~~i~l~~~~~~Hf 507 (565)
.+|. +-+ --|-++||+..+||||+|+. + .+-.|+|+.-+|.--. ..||+|||.. .||
T Consensus 273 ~Pg~--sLE-----eiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~-rsPIvLgY~~-gHF 343 (454)
T 3zrh_A 273 QPGA--SLE-----QTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCW-KSPIALGYTR-GHF 343 (454)
T ss_dssp STTC--CCC-----HHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSC-SCCEEEEEET-TEE
T ss_pred CCcc--hHH-----HHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhc-CCceEEEecc-cce
Confidence 3321 000 02556799999999999963 1 1248999998765543 3789999996 699
Q ss_pred EeeecCCC
Q 036608 508 IEVFMLPA 515 (565)
Q Consensus 508 ~sl~~~~~ 515 (565)
.+|...++
T Consensus 344 saLV~~~~ 351 (454)
T 3zrh_A 344 SALVAMEN 351 (454)
T ss_dssp EEEEEBCC
T ss_pred eeeeeccc
Confidence 99996544
No 11
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=64.61 E-value=4.9 Score=23.35 Aligned_cols=9 Identities=44% Similarity=0.962 Sum_probs=7.5
Q ss_pred cCCCCCCCC
Q 036608 301 DKTRGRPSQ 309 (565)
Q Consensus 301 ~~tkGRPk~ 309 (565)
.+++||||+
T Consensus 5 KrpRgRpkG 13 (26)
T 2ezd_A 5 KRPRGRPKG 13 (26)
T ss_dssp CCCSSCCTT
T ss_pred cCCCCCcCc
Confidence 578999997
No 12
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=22.56 E-value=32 Score=22.62 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=13.7
Q ss_pred ccccCccccccccccc
Q 036608 217 ISACGCVVRHTHGLPC 232 (565)
Q Consensus 217 ~~~CsC~~~~~~GiPC 232 (565)
...|+|.+|...|.|=
T Consensus 21 ~~~C~CG~y~~~~kp~ 36 (42)
T 2l0z_A 21 LGGCRCGKYPNLKKPT 36 (42)
T ss_dssp TSSBTTTTBCCCCCCC
T ss_pred CceeccccccCCCCcc
Confidence 4689999999999874
No 13
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=20.80 E-value=80 Score=26.19 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=30.3
Q ss_pred HHHHHHHccCCCCCcEEEeeccH---HHHHHHHHhCcccchhhhH
Q 036608 11 LERLKTIMQDDILPTMIVTDREL---ALMNAIEKIFPSATNLLCR 52 (565)
Q Consensus 11 l~~l~~~~~~~~~P~~iiTD~~~---al~~AI~~vFP~a~h~lC~ 52 (565)
++.++.+. ......|+||.|. -+.+-|.+.||++.|.+--
T Consensus 41 l~~I~~~~--~~r~VIi~TD~D~~GekIRk~i~~~lp~~~hafi~ 83 (119)
T 2fcj_A 41 LEELADEL--EGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYID 83 (119)
T ss_dssp HHHHHHHT--TTSEEEEECCSSHHHHHHHHHHHHHCTTSEEECCC
T ss_pred HHHHHHHh--cCCCEEEEECCCccHHHHHHHHHHHCCCCcEEecc
Confidence 45556653 3567789999997 5888899999999987743
Done!