BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036610
         (447 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
           Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
           Channel
          Length = 137

 Score =  109 bits (272), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/125 (45%), Positives = 82/125 (65%), Gaps = 8/125 (6%)

Query: 299 FENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYXXXXXXXXXXXX 358
           FEN  E+ L  +CE LKP LF E++ ++R GDP++EM+F+++G+L +             
Sbjct: 14  FENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLES------VTTDGGR 67

Query: 359 XXXXXENHLEDGDFFGKELIAWAQD-ESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS 417
                 + L++GDF G EL+ WA D +S SNLP S +T++ALT+VEAF LIAD+LK V S
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127

Query: 418 -FRRN 421
            FRR+
Sbjct: 128 QFRRS 132


>pdb|1TJF|A Chain A, The Crystal Structure Of The N-Terminal Domain Of Cap
           Indicates Variable Oligomerisation
 pdb|1TJF|B Chain B, The Crystal Structure Of The N-Terminal Domain Of Cap
           Indicates Variable Oligomerisation
          Length = 186

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 263 VDVHINSFLS---DLSQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLGYLCEFLKPV 317
           VD HI  F++    L+ +  N+V++L+     EK  +N      + S   L E +KP+
Sbjct: 18  VDQHITPFVALSKKLAPEVGNQVEQLVKAIDAEKALINTASQSKKPSQETLLELIKPL 75


>pdb|1S0P|A Chain A, Structure Of The N-Terminal Domain Of The Adenylyl
           Cyclase- Associated Protein (Cap) From Dictyostelium
           Discoideum.
 pdb|1S0P|B Chain B, Structure Of The N-Terminal Domain Of The Adenylyl
           Cyclase- Associated Protein (Cap) From Dictyostelium
           Discoideum
          Length = 176

 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 263 VDVHINSFLS---DLSQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLGYLCEFLKPV 317
           VD HI  F++    L+ +  N+V++L+     EK  +N      + S   L E +KP+
Sbjct: 9   VDQHITPFVALSKKLAPEVGNQVEQLVKAIDAEKALINTASQSKKPSQETLLELIKPL 66


>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
 pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
          Length = 140

 Score = 29.3 bits (64), Expect = 4.2,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 34/141 (24%)

Query: 301 NWSEKSLGYLCEFLKPVLFIERTRIIRA------------GDPIDEMIFVLKGKLWTYXX 348
           NW   +   L + L P + +E  R +RA            G+P D M FV++G +     
Sbjct: 11  NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSV----- 65

Query: 349 XXXXXXXXXXXXXXXENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLI 408
                             L  G FFG+  +   + ES+        T+ A T V   +L 
Sbjct: 66  ---------SVATPNPVELGPGAFFGEMALISGEPESA--------TVSAATTVSLLSLH 108

Query: 409 ADDLKHVLSFRRNQAALFLQS 429
           + D + + S     A +F ++
Sbjct: 109 SADFQMLCSSSPEIAEIFRKT 129


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,099,014
Number of Sequences: 62578
Number of extensions: 480664
Number of successful extensions: 1236
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1233
Number of HSP's gapped (non-prelim): 9
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)