Query 036610
Match_columns 447
No_of_seqs 335 out of 1920
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:47:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 1E-84 2.3E-89 689.8 31.2 378 5-444 163-574 (727)
2 KOG0501 K+-channel KCNQ [Inorg 100.0 1.4E-58 2.9E-63 463.4 12.3 364 5-428 294-667 (971)
3 KOG0500 Cyclic nucleotide-gate 100.0 2.8E-54 6E-59 428.4 30.1 342 4-421 73-426 (536)
4 PLN03192 Voltage-dependent pot 100.0 2.1E-54 4.5E-59 481.0 32.3 352 5-435 138-502 (823)
5 KOG0499 Cyclic nucleotide-gate 100.0 2.2E-44 4.8E-49 362.3 16.8 324 3-420 305-643 (815)
6 PRK09392 ftrB transcriptional 99.5 1.5E-13 3.3E-18 131.3 15.4 112 293-420 9-121 (236)
7 PRK11753 DNA-binding transcrip 99.5 2.1E-12 4.5E-17 121.0 16.6 107 300-420 6-113 (211)
8 cd00038 CAP_ED effector domain 99.4 3.1E-12 6.8E-17 106.0 12.6 108 298-420 1-109 (115)
9 KOG0614 cGMP-dependent protein 99.4 3E-13 6.4E-18 136.9 5.7 118 287-420 270-389 (732)
10 smart00100 cNMP Cyclic nucleot 99.4 1.2E-11 2.5E-16 103.1 14.0 111 298-421 1-112 (120)
11 PRK11161 fumarate/nitrate redu 99.4 1.6E-11 3.5E-16 117.1 15.6 112 293-420 15-128 (235)
12 COG0664 Crp cAMP-binding prote 99.4 1.9E-11 4.1E-16 113.5 15.7 113 293-420 2-115 (214)
13 PF00027 cNMP_binding: Cyclic 99.3 6.5E-12 1.4E-16 100.6 9.6 90 316-420 1-91 (91)
14 PLN02868 acyl-CoA thioesterase 99.3 1.1E-11 2.3E-16 128.5 12.1 107 293-417 10-116 (413)
15 PRK10402 DNA-binding transcrip 99.3 3.1E-11 6.7E-16 114.8 13.1 98 308-420 25-123 (226)
16 KOG1113 cAMP-dependent protein 99.2 2.1E-11 4.5E-16 118.8 8.1 105 293-417 124-228 (368)
17 PRK09391 fixK transcriptional 99.2 3.6E-10 7.8E-15 107.8 13.8 93 310-420 34-127 (230)
18 KOG0614 cGMP-dependent protein 99.2 1.8E-11 3.9E-16 124.2 5.0 105 293-417 156-260 (732)
19 TIGR03697 NtcA_cyano global ni 99.1 6.9E-10 1.5E-14 102.3 12.7 86 322-420 1-87 (193)
20 PF00520 Ion_trans: Ion transp 99.1 1.1E-10 2.3E-15 107.0 6.6 165 3-214 29-200 (200)
21 PRK13918 CRP/FNR family transc 99.1 1.8E-09 4E-14 100.3 12.9 84 313-412 5-90 (202)
22 COG2905 Predicted signal-trans 99.1 1.4E-09 3E-14 112.0 12.5 109 293-420 9-118 (610)
23 KOG1113 cAMP-dependent protein 99.0 2.5E-10 5.4E-15 111.3 5.9 117 283-420 234-351 (368)
24 KOG3713 Voltage-gated K+ chann 98.8 3.9E-09 8.5E-14 107.4 5.7 47 168-214 380-426 (477)
25 PF07885 Ion_trans_2: Ion chan 98.8 1.4E-08 3E-13 80.3 7.0 52 165-216 24-75 (79)
26 KOG1419 Voltage-gated K+ chann 98.6 9.4E-07 2E-11 90.8 14.0 87 161-252 265-354 (654)
27 KOG1545 Voltage-gated shaker-l 98.3 5.4E-08 1.2E-12 95.0 -3.6 44 168-211 396-439 (507)
28 PRK10537 voltage-gated potassi 97.9 1.2E-05 2.5E-10 82.7 6.0 52 165-216 168-219 (393)
29 KOG2968 Predicted esterase of 97.9 1.6E-05 3.4E-10 86.0 6.8 113 306-434 500-613 (1158)
30 KOG4390 Voltage-gated A-type K 97.8 5.4E-07 1.2E-11 88.8 -5.8 51 166-216 357-411 (632)
31 PF01007 IRK: Inward rectifier 97.7 0.00017 3.7E-09 72.4 9.9 52 165-216 84-137 (336)
32 KOG3684 Ca2+-activated K+ chan 97.7 0.00062 1.4E-08 69.2 12.9 68 162-229 284-353 (489)
33 KOG2968 Predicted esterase of 97.6 0.00038 8.3E-09 75.6 10.1 116 310-435 111-228 (1158)
34 KOG1420 Ca2+-activated K+ chan 97.3 0.00051 1.1E-08 71.2 6.9 52 165-216 288-339 (1103)
35 KOG1418 Tandem pore domain K+ 97.0 0.00079 1.7E-08 69.2 4.6 52 165-216 115-166 (433)
36 PF04831 Popeye: Popeye protei 96.9 0.037 8E-07 48.7 13.8 117 301-433 14-133 (153)
37 PRK11832 putative DNA-binding 96.5 0.078 1.7E-06 49.5 13.6 107 306-431 14-121 (207)
38 KOG3542 cAMP-regulated guanine 96.3 0.0055 1.2E-07 64.9 5.0 107 289-417 281-389 (1283)
39 KOG3827 Inward rectifier K+ ch 95.5 0.047 1E-06 54.8 7.8 57 166-223 113-172 (400)
40 KOG4404 Tandem pore domain K+ 92.6 0.027 5.9E-07 55.2 -0.7 42 165-206 80-121 (350)
41 KOG0498 K+-channel ERG and rel 92.6 1.4 3.1E-05 48.6 12.3 73 267-344 364-460 (727)
42 KOG3542 cAMP-regulated guanine 92.0 0.13 2.8E-06 54.9 3.3 89 293-409 39-127 (1283)
43 KOG4404 Tandem pore domain K+ 90.0 0.17 3.7E-06 49.8 1.9 50 165-214 186-243 (350)
44 KOG1418 Tandem pore domain K+ 89.6 0.06 1.3E-06 55.2 -1.7 47 165-211 242-296 (433)
45 PF08006 DUF1700: Protein of u 84.0 1.9 4.1E-05 39.4 5.1 48 237-286 15-64 (181)
46 PF07883 Cupin_2: Cupin domain 82.9 1.8 3.8E-05 32.4 3.8 44 317-373 3-47 (71)
47 COG4709 Predicted membrane pro 82.1 3.4 7.5E-05 37.7 5.8 68 237-308 15-84 (195)
48 PF05899 Cupin_3: Protein of u 82.0 2 4.4E-05 33.2 3.8 42 319-374 14-55 (74)
49 PF14377 DUF4414: Domain of un 77.7 4.8 0.0001 33.6 5.0 47 237-285 51-105 (108)
50 PRK13290 ectC L-ectoine syntha 69.5 26 0.00057 30.0 7.7 70 315-408 38-107 (125)
51 KOG3193 K+ channel subunit [In 67.3 1.3 2.9E-05 46.5 -0.9 35 166-201 218-252 (1087)
52 TIGR03037 anthran_nbaC 3-hydro 66.1 18 0.00039 32.4 6.1 50 315-374 30-81 (159)
53 COG1917 Uncharacterized conser 62.8 21 0.00046 30.3 5.9 50 314-376 45-95 (131)
54 COG0662 {ManC} Mannose-6-phosp 60.3 23 0.00051 30.2 5.7 48 313-373 37-85 (127)
55 PLN03223 Polycystin cation cha 59.9 1.5E+02 0.0032 35.5 13.1 24 193-216 1397-1420(1634)
56 PF14377 DUF4414: Domain of un 56.6 21 0.00046 29.7 4.7 49 237-288 7-67 (108)
57 PRK13264 3-hydroxyanthranilate 54.5 35 0.00076 31.1 6.0 44 320-373 42-86 (177)
58 COG3837 Uncharacterized conser 45.7 30 0.00064 30.9 3.9 46 317-375 47-94 (161)
59 PF07697 7TMR-HDED: 7TM-HD ext 44.5 17 0.00037 33.7 2.5 59 272-333 146-207 (222)
60 COG5559 Uncharacterized conser 42.6 27 0.00058 25.7 2.6 20 267-286 4-23 (65)
61 KOG3300 NADH:ubiquinone oxidor 42.5 79 0.0017 27.2 5.8 71 195-276 36-106 (146)
62 smart00835 Cupin_1 Cupin. This 41.9 73 0.0016 27.6 6.0 54 314-374 32-86 (146)
63 COG3450 Predicted enzyme of th 38.2 82 0.0018 26.7 5.3 41 319-373 52-92 (116)
64 PRK11171 hypothetical protein; 38.1 69 0.0015 31.1 5.7 46 315-373 64-111 (266)
65 PRK11171 hypothetical protein; 38.0 80 0.0017 30.7 6.1 49 313-374 185-234 (266)
66 PF14841 FliG_M: FliG middle d 37.6 26 0.00056 27.3 2.2 40 267-316 29-68 (79)
67 COG3718 IolB Uncharacterized e 36.5 1.5E+02 0.0033 28.3 7.2 34 314-347 31-64 (270)
68 PF00060 Lig_chan: Ligand-gate 32.6 43 0.00092 28.6 3.0 53 163-216 42-94 (148)
69 KOG2302 T-type voltage-gated C 31.8 7.5E+02 0.016 29.1 12.6 23 41-63 1224-1246(1956)
70 PF06249 EutQ: Ethanolamine ut 31.2 59 0.0013 28.9 3.5 29 332-373 95-123 (152)
71 PRK09943 DNA-binding transcrip 31.1 72 0.0016 28.9 4.3 43 318-373 113-156 (185)
72 KOG3609 Receptor-activated Ca2 29.4 2.9E+02 0.0062 31.3 9.0 50 167-216 555-609 (822)
73 PF11699 CENP-C_C: Mif2/CENP-C 29.2 73 0.0016 25.4 3.5 28 334-374 35-62 (85)
74 PF08763 Ca_chan_IQ: Voltage g 28.7 81 0.0018 20.8 2.9 20 421-443 9-28 (35)
75 TIGR03214 ura-cupin putative a 27.5 83 0.0018 30.5 4.2 45 317-374 63-109 (260)
76 PRK15457 ethanolamine utilizat 27.0 86 0.0019 29.9 4.0 29 332-373 175-203 (233)
77 TIGR03404 bicupin_oxalic bicup 26.9 1.6E+02 0.0035 30.1 6.5 52 314-373 247-299 (367)
78 PRK04190 glucose-6-phosphate i 26.9 2.5E+02 0.0054 25.9 7.1 50 316-373 72-130 (191)
79 PF12973 Cupin_7: ChrR Cupin-l 26.8 1.3E+02 0.0029 23.7 4.7 64 313-406 25-88 (91)
80 TIGR03214 ura-cupin putative a 26.7 1.3E+02 0.0028 29.2 5.4 49 312-373 179-228 (260)
81 COG3257 GlxB Uncharacterized p 26.7 2.3E+02 0.005 26.9 6.6 55 329-409 80-136 (264)
82 TIGR02272 gentisate_1_2 gentis 25.4 1.7E+02 0.0038 29.5 6.2 75 317-417 255-329 (335)
83 TIGR03404 bicupin_oxalic bicup 25.2 1.8E+02 0.004 29.7 6.5 51 316-374 71-121 (367)
84 PF13867 SAP30_Sin3_bdg: Sin3 24.4 95 0.0021 22.3 3.0 35 225-273 6-47 (53)
85 PF10047 DUF2281: Protein of u 23.7 71 0.0015 24.0 2.3 23 235-257 8-30 (66)
86 cd07313 terB_like_2 tellurium 23.0 3.9E+02 0.0085 21.3 7.9 56 225-287 24-80 (104)
87 PF02311 AraC_binding: AraC-li 22.3 1.5E+02 0.0033 24.1 4.5 33 328-373 19-51 (136)
88 KOG3676 Ca2+-permeable cation 21.7 2.5E+02 0.0054 31.6 6.8 70 178-247 601-681 (782)
89 TIGR02272 gentisate_1_2 gentis 21.0 1.3E+02 0.0027 30.5 4.2 47 317-375 86-132 (335)
90 TIGR01479 GMP_PMI mannose-1-ph 20.8 2E+02 0.0044 30.3 6.0 48 314-374 378-426 (468)
91 PF11151 DUF2929: Protein of u 20.5 53 0.0012 24.1 1.1 18 165-182 2-19 (57)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1e-84 Score=689.81 Aligned_cols=378 Identities=31% Similarity=0.555 Sum_probs=336.3
Q ss_pred CcceeEeeeecCCcceeeeeeeecCCc---hhh--HHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHH
Q 036610 5 SISRVVSKIAIPPIPSVLVIFGIRGTE---FST--AMTFFVLQYLLRVIRTYFVFTEAIEGSGVIADATWVIFAFYVLLY 79 (447)
Q Consensus 5 ~~~F~~Dlla~lP~~~i~~~~~~~~~~---~~~--~~~~~l~~~l~Rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (447)
+.||++|++|+||+|||++|.++ ++. ..+ ...++++||||||+|+++++++++|.+|+++|+||++++++|++|
T Consensus 163 ~twFiiDlis~lP~~~i~~~~~~-~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~ 241 (727)
T KOG0498|consen 163 KTWFLIDLISTLPFDQIVVLVVI-GSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVY 241 (727)
T ss_pred hhhHHHHHHHhcChhhheeeeee-cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 47999999999999999999886 332 111 256677899999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHhHhhhhHhHHHHHhhcCCCCCcceeeecCCCCCCcccccccCCCCCCCCCccccchhhhhhhcCcccc
Q 036610 80 LQSGHMFGALWYYYAIRKVTECWREACKNHTGCGHISFACNGSFGDYNFLNDFCPISTGSTTRYSFGLYNDALQSGIVAE 159 (447)
Q Consensus 80 ~l~~H~~~c~Wy~~~~~~~~~c~~~~~~~~~~c~~~~l~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 159 (447)
||++||+||+||++|+++.++||+.+ +|+...+......+..|+||+|++
T Consensus 242 ~l~sH~~gc~wYlia~~~~~~~~~~~---------------------tw~~~l~~~~~~~~~~~~fg~~s~--------- 291 (727)
T KOG0498|consen 242 LLASHWAGCIWYLIAIERPASCPRKA---------------------TWLGSLGRLLSCYNLSFTFGIYSL--------- 291 (727)
T ss_pred HHHHHHHHHHHHHHHhcccccCcccc---------------------ccccccccccccCcccccccchhH---------
Confidence 99999999999999999998888754 344332100001223367877654
Q ss_pred chhHHHHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH---------HHHHHHhh-HHHHh
Q 036610 160 TDFLKKLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI---------ETARSQKI-NPRWQ 229 (447)
Q Consensus 160 ~s~~~~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~---------~~~~~k~~-v~~~m 229 (447)
+.||++|+||+++||||+|||+++++|..|++|+|++|++|+++||++||||++ ++|+.|++ +++||
T Consensus 292 ---~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m 368 (727)
T KOG0498|consen 292 ---ALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWM 368 (727)
T ss_pred ---HHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999999999999999999999999998 78899999 99999
Q ss_pred ccccccccCCCHhHHHHHHHHHHHHHHhhhccccchhHHHHHhhcCHHHHHHHHHHHccCcccccccccccCCCHHHHHH
Q 036610 230 GLKQSKHYAVISGDRKVLRKFKKAKRENLVNKHVDVHINSFLSDLSQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLGY 309 (447)
Q Consensus 230 ~~~~~~~~~lp~~L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~Lp~~Lr~ei~~~l~~~~~~L~~vplF~~l~~~~l~~ 309 (447)
++|+||++||+||++|++|+|+. ++|+| |+++|++||++||+||++|+|+++ ++++|+|+++|+++|++
T Consensus 369 -----~~~~LP~~LRqRi~~y~q~kw~~--t~Gvd--ee~lL~~LP~~LR~dI~~hL~~~l--v~~vpLF~~md~~~L~a 437 (727)
T KOG0498|consen 369 -----SRRQLPPDLRQRIRRYEQYKWLA--TRGVD--EEELLQSLPKDLRRDIKRHLCLDL--VRKVPLFAGMDDGLLDA 437 (727)
T ss_pred -----HhccCCHHHHHHHHHHHHHHHhh--ccCcC--HHHHHHhCCHHHHHHHHHHHhHHH--HhhCchhhcCCHHHHHH
Confidence 99999999999999999999999 99999 999999999999999999999999 99999999999999999
Q ss_pred HHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCC
Q 036610 310 LCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNL 389 (447)
Q Consensus 310 L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~ 389 (447)
|+.++++..|.|||+|++|||+.++||||.+|.+++.. .+|+ +..+...|++||+|||+.++||++.
T Consensus 438 l~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~------~~~g--~~~~~~~L~~Gd~~GeEl~~~~~~~----- 504 (727)
T KOG0498|consen 438 LCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESIT------TDGG--GFFVVAILGPGDFFGEELLTWCLDL----- 504 (727)
T ss_pred HHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEE------ccCC--ceEEEEEecCCCccchHHHHHHhcC-----
Confidence 99999999999999999999999999999999999999 5655 3346899999999998877888742
Q ss_pred CCCccEEEEcceEEEEEEcHhhHHHHHh-CHH------------------HHHHHHHHHHHHHHHHHhHhhhhh
Q 036610 390 PISNKTIQALTDVEAFTLIADDLKHVLS-FRR------------------NQAALFLQSYWRFREFLRERRLSK 444 (447)
Q Consensus 390 ~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~------------------~~~~~~~q~~~~~~~~~~~~~~~~ 444 (447)
|+++||+|+|.|+++.|+++||+++++ ||+ .|+++.+|.+|+++. +|+.++
T Consensus 505 -p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~---~~~~~~ 574 (727)
T KOG0498|consen 505 -PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHI---KRKGEE 574 (727)
T ss_pred -CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHH---Hhhccc
Confidence 458999999999999999999999999 998 889999999999988 555444
No 2
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-58 Score=463.37 Aligned_cols=364 Identities=18% Similarity=0.209 Sum_probs=300.0
Q ss_pred CcceeEeeeecCCcceeeeeeeecCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 036610 5 SISRVVSKIAIPPIPSVLVIFGIRGTEFSTAMTFFVLQYLLRVIRTYFVFTEAIEGSGVIADATWVIFAFYVLLYLQSGH 84 (447)
Q Consensus 5 ~~~F~~Dlla~lP~~~i~~~~~~~~~~~~~~~~~~l~~~l~Rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H 84 (447)
..||++|++|+||.|.+..+--.+ +...+++. ..|+.||+|+.|+.|+++++.+|- .+.+++.++.|+|+||
T Consensus 294 KsWFvIDLLSCLPYDi~naF~~~d--egI~SLFS--aLKVVRLLRLGRVaRKLD~YlEYG----AA~LvLLlC~y~lvAH 365 (971)
T KOG0501|consen 294 KSWFVIDLLSCLPYDIFNAFERDD--EGIGSLFS--ALKVVRLLRLGRVARKLDHYLEYG----AAVLVLLLCVYGLVAH 365 (971)
T ss_pred HHHHHHHHHhcccHHHHHHhhccc--ccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Confidence 358999999999999775442111 11111332 348899999999999999876653 3566778889999999
Q ss_pred HHHHHHHhHhhhhHhHHHHHhhcCCCCCcceeeecCCCCCCcccccccCCCCCCCCCccccchhhhhhhcCccccchhHH
Q 036610 85 MFGALWYYYAIRKVTECWREACKNHTGCGHISFACNGSFGDYNFLNDFCPISTGSTTRYSFGLYNDALQSGIVAETDFLK 164 (447)
Q Consensus 85 ~~~c~Wy~~~~~~~~~c~~~~~~~~~~c~~~~l~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~ 164 (447)
|+||+||.||..++- ...-+....++|++.... ..+.+|+|..-+... ++.+||...
T Consensus 366 WlACiWysIGd~ev~-----------------~~~~n~i~~dsWL~kLa~---~~~tpY~~~~s~~~~---~~gGPSr~S 422 (971)
T KOG0501|consen 366 WLACIWYSIGDYEVR-----------------DEMDNTIQPDSWLWKLAN---DIGTPYNYNLSNKGT---LVGGPSRTS 422 (971)
T ss_pred HHHHhheeccchhee-----------------cccccccccchHHHHHHh---hcCCCceeccCCCce---eecCCcccc
Confidence 999999999976531 111223456899987643 346778886322211 246788899
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH--HHHH-----HHh--h-HHHHhccccc
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI--ETAR-----SQK--I-NPRWQGLKQS 234 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~--~~~~-----~k~--~-v~~~m~~~~~ 234 (447)
.|+.|+||+++.|||||+|.+.+++..|++|++++|++|+++||.|+|+|++ +.|. .+. + +++||
T Consensus 423 ~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFl----- 497 (971)
T KOG0501|consen 423 AYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFL----- 497 (971)
T ss_pred eehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHH-----
Confidence 9999999999999999999988888889999999999999999999999988 4442 221 2 88999
Q ss_pred cccCCCHhHHHHHHHHHHHHHHhhhccccchhHHHHHhhcCHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHhcc
Q 036610 235 KHYAVISGDRKVLRKFKKAKRENLVNKHVDVHINSFLSDLSQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLGYLCEFL 314 (447)
Q Consensus 235 ~~~~lp~~L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~Lp~~Lr~ei~~~l~~~~~~L~~vplF~~l~~~~l~~L~~~l 314 (447)
+-+.+|++|.+||.+|.-..|.. ++|+| .+++|+-+|+++|+||+.|++++. ++.+|-|+-.++.++++++..+
T Consensus 498 KL~evPK~LsERVMDYvVSTWaM--tkGiD--TeKVL~~CPKDMkADICVHLNRKV--FnEHpaFRLASDGCLRaLAm~f 571 (971)
T KOG0501|consen 498 KLYEVPKGLSERVMDYVVSTWAM--TKGID--TEKVLGYCPKDMKADICVHLNRKV--FNEHPAFRLASDGCLRALAMEF 571 (971)
T ss_pred HHHhccHHHHHHHHHHHHHHhhh--hcCcC--HHHHhhhCccccccceeeecchhh--hccCcceeeccchhHHHHHHHH
Confidence 99999999999999999999999 99999 999999999999999999999999 9999999999999999999999
Q ss_pred EeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCcc
Q 036610 315 KPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNK 394 (447)
Q Consensus 315 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~ 394 (447)
+..+..|||.|++.||..|.+.||++|++++.+ .|. .+++|++||+||++.+ - ......+.+
T Consensus 572 ~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQ------DDE------VVAILGKGDVFGD~FW--K----~~t~~qs~A 633 (971)
T KOG0501|consen 572 QTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQ------DDE------VVAILGKGDVFGDEFW--K----ENTLGQSAA 633 (971)
T ss_pred HhccCCCcceeeecCCccceEEEEEecceEEee------cCc------EEEEeecCccchhHHh--h----hhhhhhhhh
Confidence 999999999999999999999999999999998 343 3799999999999844 2 223456889
Q ss_pred EEEEcceEEEEEEcHhhHHHHHhCHHHHHHHHHH
Q 036610 395 TIQALTDVEAFTLIADDLKHVLSFRRNQAALFLQ 428 (447)
Q Consensus 395 tv~Alt~~el~~L~~~dl~~ll~f~~~~~~~~~q 428 (447)
+|+|+|+|+++.|.+|.+.++++|...++.-+..
T Consensus 634 NVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaR 667 (971)
T KOG0501|consen 634 NVRALTYCDLHMIKRDKLLKVLDFYTAFANSFAR 667 (971)
T ss_pred hhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999965544444433
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-54 Score=428.44 Aligned_cols=342 Identities=20% Similarity=0.213 Sum_probs=280.3
Q ss_pred CCcceeEeeeecCCcceeeeeeeecCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHH-HH
Q 036610 4 GSISRVVSKIAIPPIPSVLVIFGIRGTEFSTAMTFFVLQYLLRVIRTYFVFTEAIEGSGVIADATWVIFAFYVLLYL-QS 82 (447)
Q Consensus 4 ~~~~F~~Dlla~lP~~~i~~~~~~~~~~~~~~~~~~l~~~l~Rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~ 82 (447)
+|.-|.+|++|.+|+|+++++. ++.+.. + ++|+.|++|++..+.+-+..+.+- + +..+.+|+.|. +.
T Consensus 73 ~s~~f~lD~l~liP~D~l~~~~---~~~~~~-r----~nRllk~yRl~~F~~rTetrT~~P--n--~fri~~lv~~~~il 140 (536)
T KOG0500|consen 73 HSTQFKLDVLSLIPLDLLLFKD---GSASLE-R----LNRLLKIYRLFEFFDRTETRTTYP--N--AFRISKLVHYCLIL 140 (536)
T ss_pred HhhhhhhhhhhhcchhHHhhcC---CcchHH-H----HHHHHHHHHHHHHHHHhccccCCc--h--HHHHHHHHHHHHHH
Confidence 5778999999999999998763 232211 2 346666666666665554444332 2 22356777775 58
Q ss_pred HHHHHHHHHhHhhhhHhHHHHHhhcCCCCCcceeeecCCCCCCcccccccCCCCCCCCCccccchhhhhhhcCccccchh
Q 036610 83 GHMFGALWYYYAIRKVTECWREACKNHTGCGHISFACNGSFGDYNFLNDFCPISTGSTTRYSFGLYNDALQSGIVAETDF 162 (447)
Q Consensus 83 ~H~~~c~Wy~~~~~~~~~c~~~~~~~~~~c~~~~l~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~ 162 (447)
.||-||++|+|+.. .|++.++|++..-. +| .|+. . ....+
T Consensus 141 fHWNaClYf~iS~~------------------------~g~~~d~wvY~~i~--d~-----~~~~--------c-~~~n~ 180 (536)
T KOG0500|consen 141 FHWNACLYFLISKA------------------------IGFTTDDWVYPKIN--DP-----EFAT--------C-DAGNL 180 (536)
T ss_pred HHHhhHHHHhhhHh------------------------cCccccccccCCcc--Cc-----cccc--------c-chhHH
Confidence 89999999999752 23567889985210 01 1111 1 12458
Q ss_pred HHHHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH---------HHHHHHhh-HHHHhccc
Q 036610 163 LKKLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI---------ETARSQKI-NPRWQGLK 232 (447)
Q Consensus 163 ~~~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~---------~~~~~k~~-v~~~m~~~ 232 (447)
.++|++|+||+..||||+|.-..|.++ .|.+|.|+-.++|+++||.|+|||++ .+.+.++. +++||
T Consensus 181 ~ReY~~S~YWStLTlTTiGe~P~P~t~-~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM--- 256 (536)
T KOG0500|consen 181 TREYLYSLYWSTLTLTTIGEQPPPVTS-SEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYM--- 256 (536)
T ss_pred HHHHHHHHHHHhhhhhhccCCCCCCcC-chhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHH---
Confidence 999999999999999999976655555 69999999999999999999999877 55666777 99999
Q ss_pred cccccCCCHhHHHHHHHHHHHHHHhhhccccchhHHHHHhhcCHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHh
Q 036610 233 QSKHYAVISGDRKVLRKFKKAKRENLVNKHVDVHINSFLSDLSQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLGYLCE 312 (447)
Q Consensus 233 ~~~~~~lp~~L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~Lp~~Lr~ei~~~l~~~~~~L~~vplF~~l~~~~l~~L~~ 312 (447)
+.|++|+.|+.||.+||.|.|.+ .+-.| |+++++.||+.|++||+.+++.+. |+++++|+++++.++.+++.
T Consensus 257 --~~RkV~~~lq~rVikwfdYlwa~--~~~~D--Eeevl~~LP~kL~aeIA~nvh~dT--LkkV~iF~~ce~~lL~elVL 328 (536)
T KOG0500|consen 257 --RYRKVPKALQTRVIKWFDYLWAH--KKIVD--EEEVLKLLPDKLKAEIAINVHLDT--LKKVRIFQDCEAGLLVELVL 328 (536)
T ss_pred --HHhcccHHHHHHHHHHHHHHHhc--ccccc--HHHHHHhCCHHHHhHhHHHHHHHH--HHhhhHHHhcchhHHHHHHH
Confidence 99999999999999999999999 88888 999999999999999999999999 99999999999999999999
Q ss_pred ccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCC
Q 036610 313 FLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPIS 392 (447)
Q Consensus 313 ~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~ 392 (447)
.++++.|.|||+|+++||.+.+||+|.+|.+++.. .||+. ...++++|++|||.++++.- ...+...|
T Consensus 329 klk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~------dDg~t----~~~~L~~G~~FGEisIlni~--g~~~gNRR 396 (536)
T KOG0500|consen 329 KLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVA------DDGVT----VFVTLKAGSVFGEISILNIK--GNKNGNRR 396 (536)
T ss_pred HhcceeeCCCCeEEecCcccceEEEEEccEEEEEe------cCCcE----EEEEecCCceeeeeEEEEEc--CcccCCcc
Confidence 99999999999999999999999999999999999 77765 46899999999999874322 11234578
Q ss_pred ccEEEEcceEEEEEEcHhhHHHHHh-CHHH
Q 036610 393 NKTIQALTDVEAFTLIADDLKHVLS-FRRN 421 (447)
Q Consensus 393 ~~tv~Alt~~el~~L~~~dl~~ll~-f~~~ 421 (447)
+++++.+..+++|+|+++|+.++++ ||+.
T Consensus 397 tanvrSvGYSDlfvLskdDl~~aL~eYP~a 426 (536)
T KOG0500|consen 397 TANVRSVGYSDLFVLSKDDLWEALSEYPDA 426 (536)
T ss_pred eeeeeeeccceeeEeeHHHHHHHHHhCCHH
Confidence 9999999999999999999999999 9994
No 4
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=2.1e-54 Score=480.99 Aligned_cols=352 Identities=16% Similarity=0.209 Sum_probs=278.5
Q ss_pred CcceeEeeeecCCcceeeeeeeecCCch-h-hHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHH
Q 036610 5 SISRVVSKIAIPPIPSVLVIFGIRGTEF-S-TAMTFFVLQYLLRVIRTYFVFTEAIEGSGVIADATWVIFAFYVLLYLQS 82 (447)
Q Consensus 5 ~~~F~~Dlla~lP~~~i~~~~~~~~~~~-~-~~~~~~l~~~l~Rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 82 (447)
+.||++|++|++|++.+.... ++... . ..+++ .+.|+.|+.|+.++++++++...+ ...|...+..++..+++
T Consensus 138 ~~~f~~Dlis~lP~~~i~~~~--~~~~~~~~~~~~l-~llrl~Rl~ri~~~~~~le~~~~~--~~~~~~~~kli~~~l~~ 212 (823)
T PLN03192 138 STWFLMDVASTIPFQALAYLI--TGTVKLNLSYSLL-GLLRFWRLRRVKQLFTRLEKDIRF--SYFWIRCARLLSVTLFL 212 (823)
T ss_pred HHhHHHHHHHHhHHHHHHHHh--cCCccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHH
Confidence 458999999999999764321 22211 1 11222 233666666666777766653322 22344433333344568
Q ss_pred HHHHHHHHHhHhhhhHhHHHHHhhcCCCCCcceeeecCCCCCCcccccccCCCCCCCCCccccchhhhhhhcCccccchh
Q 036610 83 GHMFGALWYYYAIRKVTECWREACKNHTGCGHISFACNGSFGDYNFLNDFCPISTGSTTRYSFGLYNDALQSGIVAETDF 162 (447)
Q Consensus 83 ~H~~~c~Wy~~~~~~~~~c~~~~~~~~~~c~~~~l~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~ 162 (447)
+||+||+||++|... +..+++|+...-+. ..+.++
T Consensus 213 ~H~~aC~~y~i~~~~------------------------~~~~~~Wi~~~~~~---------------------~~~~s~ 247 (823)
T PLN03192 213 VHCAGCLYYLIADRY------------------------PHQGKTWIGAVIPN---------------------FRETSL 247 (823)
T ss_pred HHHHHHHHHHHHhhc------------------------CCCCCchHHHhhhc---------------------cccCcH
Confidence 999999999998421 11356898642110 235789
Q ss_pred HHHHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH---------HHHHHHhh-HHHHhccc
Q 036610 163 LKKLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI---------ETARSQKI-NPRWQGLK 232 (447)
Q Consensus 163 ~~~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~---------~~~~~k~~-v~~~m~~~ 232 (447)
+.+|++|+|||++|||||||||++|.|..|++|+|++|++|+++|||+||+|++ .+++.+++ +++||
T Consensus 248 ~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym--- 324 (823)
T PLN03192 248 WIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFV--- 324 (823)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 999999999999999999999999999999999999999999999999999987 23333444 89999
Q ss_pred cccccCCCHhHHHHHHHHHHHHHHhhhccccchhHHHHHhhcCHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHh
Q 036610 233 QSKHYAVISGDRKVLRKFKKAKRENLVNKHVDVHINSFLSDLSQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLGYLCE 312 (447)
Q Consensus 233 ~~~~~~lp~~L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~Lp~~Lr~ei~~~l~~~~~~L~~vplF~~l~~~~l~~L~~ 312 (447)
+.++||++||+||++|++++|+. ++.+ ++++++.||++||.+|+.+++.++ ++++|+|++++++++.+|+.
T Consensus 325 --~~~~lp~~lq~ri~~y~~~~~~~---~~~~--~~~~l~~Lp~~Lr~~i~~~l~~~~--l~~~~lF~~~s~~~l~~L~~ 395 (823)
T PLN03192 325 --GRNRLPPRLKDQILAYMCLRFKA---ESLN--QQQLIDQLPKSICKSICQHLFLPV--VEKVYLFKGVSREILLLLVT 395 (823)
T ss_pred --HHcCCCHHHHHHHHHHHHHHHhh---cccc--HHHHHHHcCHHHHHHHHHHHHHHH--HhhCcchhcCCHHHHHHHHH
Confidence 99999999999999999999987 5678 899999999999999999999999 99999999999999999999
Q ss_pred ccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCC
Q 036610 313 FLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPIS 392 (447)
Q Consensus 313 ~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~ 392 (447)
.++++.|.|||.|+.|||.++++|||.+|.|++.. .+++++. .+..+++||+|||..++ ...++
T Consensus 396 ~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~------~~~~~e~--~l~~l~~Gd~FGE~~~l--------~~~p~ 459 (823)
T PLN03192 396 KMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIID------SEGEKER--VVGTLGCGDIFGEVGAL--------CCRPQ 459 (823)
T ss_pred hhheeeeCCCCEEEECCCCCceEEEEEecEEEEEE------ecCCcce--eeEEccCCCEecchHHh--------cCCCC
Confidence 99999999999999999999999999999999987 3433322 36889999999999762 12468
Q ss_pred ccEEEEcceEEEEEEcHhhHHHHHh-CHHHHHHHHHHHHHHHHH
Q 036610 393 NKTIQALTDVEAFTLIADDLKHVLS-FRRNQAALFLQSYWRFRE 435 (447)
Q Consensus 393 ~~tv~Alt~~el~~L~~~dl~~ll~-f~~~~~~~~~q~~~~~~~ 435 (447)
++|++|.+.|+++.|++++|.++++ +|+. +..++.+..++.+
T Consensus 460 ~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d-~~~i~~~~l~~~~ 502 (823)
T PLN03192 460 SFTFRTKTLSQLLRLKTSTLIEAMQTRQED-NVVILKNFLQHHK 502 (823)
T ss_pred CCeEEEcccEEEEEEEHHHHHHHHHHhhHH-HHHHHHHHHHHhh
Confidence 8999999999999999999999999 8883 4455666555544
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-44 Score=362.34 Aligned_cols=324 Identities=16% Similarity=0.236 Sum_probs=268.7
Q ss_pred CCCcceeEeeeecCCcceeeeeeeecCCchhhHHHHHHHHHHHHHHHH---HHHHHhhhhcchhhhhhHHHHHHHHHHHH
Q 036610 3 LGSISRVVSKIAIPPIPSVLVIFGIRGTEFSTAMTFFVLQYLLRVIRT---YFVFTEAIEGSGVIADATWVIFAFYVLLY 79 (447)
Q Consensus 3 ~~~~~F~~Dlla~lP~~~i~~~~~~~~~~~~~~~~~~l~~~l~Rl~r~---~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (447)
++|--|=+|++|.||+|+++++++.. . .+ |++|++.+ +.+++.+++ +...+++..+..-+.|
T Consensus 305 l~sr~FklDllsiLPldllY~~~G~~---p---~w-----R~~R~lK~~sF~e~~~~Le~----i~s~~y~~RV~rT~~Y 369 (815)
T KOG0499|consen 305 LTSRKFKLDLLSILPLDLLYLFFGFN---P---MW-----RANRMLKYTSFFEFNHHLES----IMSKAYIYRVIRTTGY 369 (815)
T ss_pred HHhhhhhhhHHhhhhHHHHHHHhccc---h---hh-----hhhhHHHHHHHHHHHHHHHH----HhcchhhhhhHHHHHH
Confidence 45677999999999999888665321 1 11 44454444 444555543 4455666666555666
Q ss_pred HH-HHHHHHHHHHhHhhhhHhHHHHHhhcCCCCCcceeeecCCCCCCcccccccCCCCCCCCCccccchhhhhhhcCccc
Q 036610 80 LQ-SGHMFGALWYYYAIRKVTECWREACKNHTGCGHISFACNGSFGDYNFLNDFCPISTGSTTRYSFGLYNDALQSGIVA 158 (447)
Q Consensus 80 ~l-~~H~~~c~Wy~~~~~~~~~c~~~~~~~~~~c~~~~l~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 158 (447)
|| ..|.=+|++|..+.. .|.+.+.|+++.-
T Consensus 370 mlyilHinacvYY~~Say------------------------qglG~~rWVydg~------------------------- 400 (815)
T KOG0499|consen 370 LLYILHINACVYYWASAY------------------------QGLGTTRWVYDGE------------------------- 400 (815)
T ss_pred HHHHHhhhHHHHHHHHhh------------------------cccccceeEEcCC-------------------------
Confidence 65 789999999988643 2346788998531
Q ss_pred cchhHHHHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH---------HHHHHHhh-HHHH
Q 036610 159 ETDFLKKLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI---------ETARSQKI-NPRW 228 (447)
Q Consensus 159 ~~s~~~~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~---------~~~~~k~~-v~~~ 228 (447)
...|++|+|||..|+||+|+..-| ++..|.+|..+.-+.|+++||.+||.|-. .+++..+. .-.|
T Consensus 401 ----Gn~YiRCyyfa~kt~~tiG~~P~P-~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~y 475 (815)
T KOG0499|consen 401 ----GNEYIRCYYFAVKTLITIGGLPEP-QTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAY 475 (815)
T ss_pred ----CCceeeehhhHHHHHHHhcCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 125999999999999999986654 55789999999999999999999999844 45565566 6789
Q ss_pred hccccccccCCCHhHHHHHHHHHHHHHHhhhccccchhHHHHHhhcCHHHHHHHHHHHccCcccccccccccCCCHHHHH
Q 036610 229 QGLKQSKHYAVISGDRKVLRKFKKAKRENLVNKHVDVHINSFLSDLSQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLG 308 (447)
Q Consensus 229 m~~~~~~~~~lp~~L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~Lp~~Lr~ei~~~l~~~~~~L~~vplF~~l~~~~l~ 308 (447)
| +..+||++.+.||+.+|+|.|.. ++..| |.++|+.||..||.|++..++-.+ +.+|.+|++|+.+.++
T Consensus 476 m-----~~~~i~kevqnRVr~WyeyTW~s--Qr~LD--Es~ll~~LP~klq~dlAi~V~y~~--lSKVqLFq~Cdr~mir 544 (815)
T KOG0499|consen 476 M-----NNYSIPKEVQNRVRTWYEYTWDS--QRMLD--ESDLLKTLPTKLQLDLAIDVNYSI--LSKVQLFQGCDRQMIR 544 (815)
T ss_pred H-----HhcCCcHHHHHHHHHHHHhhhhh--hcccc--HHHHHHhcchhheeeeeEEeehhh--hhHHHHhhhhHHHHHH
Confidence 9 99999999999999999999999 99999 999999999999999999999999 9999999999999999
Q ss_pred HHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCC
Q 036610 309 YLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSN 388 (447)
Q Consensus 309 ~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~ 388 (447)
.++.+++.+.|.|||+|++.||.+.+||+|..|.|+|..- ++|.. +..+|.+|++|||++++. . .+
T Consensus 545 DmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGG-----p~~~~----Vl~tL~~GsVFGEISLLa-i----gG 610 (815)
T KOG0499|consen 545 DMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGG-----PDGTK----VLVTLKAGSVFGEISLLA-I----GG 610 (815)
T ss_pred HHHHHhhceeecCCceeeecccccceeEEeecceEEEecC-----CCCCE----EEEEecccceeeeeeeee-e----cC
Confidence 9999999999999999999999999999999999999982 45543 578999999999998732 1 23
Q ss_pred CCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 389 LPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 389 ~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
...|+|+|+|...|.+|+|+++||.+++. ||.
T Consensus 611 ~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~ 643 (815)
T KOG0499|consen 611 GNRRTANVVAHGFANLFVLDKKDLNEILVHYPD 643 (815)
T ss_pred CCccchhhhhcccceeeEecHhHHHHHHHhCcc
Confidence 34789999999999999999999999999 998
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.53 E-value=1.5e-13 Score=131.26 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=99.4
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
++.+|+|++++++.++.+....+.+.|++|+.|+++||+++.+|+|.+|.|+++.. .+|++. .+..+.+|++
T Consensus 9 l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~-----~~~~~~---~i~~~~~g~~ 80 (236)
T PRK09392 9 LRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSAS-----SQDRET---TLAILRPVST 80 (236)
T ss_pred HhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEc-----CCCceE---EEEEeCCCch
Confidence 88999999999999999999999999999999999999999999999999999983 334332 4688999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
||+..+ + +..++.++++|+++|+++.+++++|++++. .|.
T Consensus 81 ~g~~~~---~-----~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~ 121 (236)
T PRK09392 81 FILAAV---V-----LDAPYLMSARTLTRSRVLMIPAELVREAMSEDPG 121 (236)
T ss_pred hhhHHH---h-----CCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHH
Confidence 999865 1 223678999999999999999999999999 888
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.46 E-value=2.1e-12 Score=120.96 Aligned_cols=107 Identities=13% Similarity=0.232 Sum_probs=91.8
Q ss_pred cCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhH
Q 036610 300 ENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIA 379 (447)
Q Consensus 300 ~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~ 379 (447)
+.+|++.++.++..++.+.|.+|++|+.+||+.+.+|||.+|.++++.. ..+|++. .+..+++||+||+..+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~----~~~g~~~---~~~~~~~g~~~g~~~~- 77 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIK----DEEGKEM---ILSYLNQGDFIGELGL- 77 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEE----CCCCCEE---EEEEcCCCCEEeehhh-
Confidence 4579999999999999999999999999999999999999999999972 2345432 4678999999999865
Q ss_pred hhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 380 WAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 380 ~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+ .+.++++.+++|.++|+++.+++++|.+++. .|+
T Consensus 78 --~----~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 113 (211)
T PRK11753 78 --F----EEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD 113 (211)
T ss_pred --c----cCCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHH
Confidence 1 1223577899999999999999999999999 888
No 8
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.41 E-value=3.1e-12 Score=106.02 Aligned_cols=108 Identities=28% Similarity=0.426 Sum_probs=92.8
Q ss_pred cccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhh
Q 036610 298 EFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKEL 377 (447)
Q Consensus 298 lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~ 377 (447)
+|+.++++.++.++..++.+.+.+|+.|+.+|++.+.+|+|.+|.+++... ..+|++ . .+..+.+|++||+..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~----~~~g~~-~--~~~~~~~g~~~g~~~ 73 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKL----DEDGRE-Q--IVGFLGPGDLFGELA 73 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEE----CCCCcE-E--EEEecCCccCcChHH
Confidence 578999999999999999999999999999999999999999999999983 123322 1 367889999999986
Q ss_pred hHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 378 IAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 378 l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+. +..++..+++|.++|+++.++.++|..++. +|.
T Consensus 74 ~~--------~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~ 109 (115)
T cd00038 74 LL--------GNGPRSATVRALTDSELLVLPRSDFRRLLQEYPE 109 (115)
T ss_pred Hh--------cCCCCCceEEEcCceEEEEEeHHHHHHHHHHCcH
Confidence 51 223578899999999999999999999998 876
No 9
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.39 E-value=3e-13 Score=136.92 Aligned_cols=118 Identities=22% Similarity=0.321 Sum_probs=100.7
Q ss_pred ccCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeee
Q 036610 287 GRTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENH 366 (447)
Q Consensus 287 ~~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~ 366 (447)
+.++ |+++|+|+++|++.|..|++.++...|..|++|++||+.++.+|+|.+|+|.+.+. .++.. +-..+.+
T Consensus 270 ~~~f--Lrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~-----~e~~~-q~~~lr~ 341 (732)
T KOG0614|consen 270 YMNF--LRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQ-----DEGST-QPQELRT 341 (732)
T ss_pred HHHH--HHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeec-----CCCCC-chhHHhh
Confidence 4567 99999999999999999999999999999999999999999999999999999993 22311 1124789
Q ss_pred cCCCCeechhhhHhhcccCCCCCCCCccEEEEcce-EEEEEEcHhhHHHHHh-CHH
Q 036610 367 LEDGDFFGKELIAWAQDESSSNLPISNKTIQALTD-VEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 367 l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~-~el~~L~~~dl~~ll~-f~~ 420 (447)
++.||+|||.++. +...++|++.|.+. ++++.|++|.|..++. +-+
T Consensus 342 l~kGd~FGE~al~--------~edvRtAniia~~~gv~cl~lDresF~~liG~l~~ 389 (732)
T KOG0614|consen 342 LNKGDYFGERALL--------GEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEE 389 (732)
T ss_pred ccccchhhHHHhh--------ccCccchhhhccCCCceEEEecHHHHHHhcccHHH
Confidence 9999999999872 23468899999987 9999999999998887 433
No 10
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.38 E-value=1.2e-11 Score=103.06 Aligned_cols=111 Identities=24% Similarity=0.326 Sum_probs=92.7
Q ss_pred cccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhh
Q 036610 298 EFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKEL 377 (447)
Q Consensus 298 lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~ 377 (447)
+|.+++++.++.++..++.+.|.+|++|+++||+.+.+|||.+|.+++... ..+|... .+..+++|++||+..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~----~~~g~~~---~~~~~~~g~~~g~~~ 73 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKV----LEDGREQ---ILGILGPGDFFGELA 73 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEE----CCCCceE---EEEeecCCceechhh
Confidence 578999999999999999999999999999999999999999999999982 1233321 368899999999986
Q ss_pred hHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHHH
Q 036610 378 IAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRRN 421 (447)
Q Consensus 378 l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~ 421 (447)
+. .....++..++.|.++|++..++.+++..... +|..
T Consensus 74 ~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 112 (120)
T smart00100 74 LL------TNSRRAASATAVALELATLLRIDFRDFLQLLQENPQL 112 (120)
T ss_pred hc------cCCCcccceEEEEEeeEEEEccCHHHHHHHHHHhHHH
Confidence 51 01223567899999999999999999999988 7763
No 11
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.36 E-value=1.6e-11 Score=117.15 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=92.0
Q ss_pred ccccccccCCCHHHHHHHHhccEe-EEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCC
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKP-VLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGD 371 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~-~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd 371 (447)
+++.+.|..+++++++.|....+. +.|.|||.|+++||+.+++|+|.+|.|+++.. ..+|.+. .+..+.|||
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~----~~~G~e~---i~~~~~~gd 87 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTI----TEQGDEQ---ITGFHLAGD 87 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEE----CCCCCEE---EEEeccCCc
Confidence 566666667999999999988864 67999999999999999999999999999982 2345432 356779999
Q ss_pred eechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 372 FFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 372 ~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+||+..+ . . .+++.+++|+++++++.+++++|+.++. +|.
T Consensus 88 ~~g~~~~---~-----~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~ 128 (235)
T PRK11161 88 LVGFDAI---G-----S-GQHPSFAQALETSMVCEIPFETLDDLSGKMPK 128 (235)
T ss_pred eeccccc---c-----C-CCCcceEEEeccEEEEEEEHHHHHHHHHHChH
Confidence 9998654 1 1 1345689999999999999999999999 888
No 12
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.36 E-value=1.9e-11 Score=113.52 Aligned_cols=113 Identities=21% Similarity=0.252 Sum_probs=95.3
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
+.+.+.|...+++....+....+.+.+++|++|+++||+++.+|+|.+|.++++.. ..+|.+. .+..++|||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~----~~~G~~~---~~~~~~~g~~ 74 (214)
T COG0664 2 LKENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYAN----TEDGREI---ILGFLGPGDF 74 (214)
T ss_pred cccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEE----CCCCcEE---EEEEecCCch
Confidence 35677888788888888888899999999999999999999999999999999993 2344432 3578999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
|||..+. ...+++++++|+++|+++.+++++|+.++. .|.
T Consensus 75 fg~~~l~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~ 115 (214)
T COG0664 75 FGELALL--------GGDPRSASAVALTDVEVLEIPRKDFLELLAESPK 115 (214)
T ss_pred hhhHHHh--------cCCCccceEEEcceEEEEEecHHHHHHHHhhCcH
Confidence 9999761 112688999999999999999999999988 466
No 13
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.34 E-value=6.5e-12 Score=100.63 Aligned_cols=90 Identities=24% Similarity=0.298 Sum_probs=74.9
Q ss_pred eEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccE
Q 036610 316 PVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKT 395 (447)
Q Consensus 316 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~t 395 (447)
++.|.+|++|+++||+.+++|||++|.+++... .++++.. .+..+++|++||+..+.. ..++..+
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~-----~~~~~~~--~~~~~~~g~~~g~~~~~~--------~~~~~~~ 65 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSI-----NEDGKEQ--IIFFLGPGDIFGEIELLT--------GKPSPFT 65 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEE-----TTTSEEE--EEEEEETTEEESGHHHHH--------TSBBSSE
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEec-----eecceee--eecceeeeccccceeecC--------CCccEEE
Confidence 368999999999999999999999999999993 2222211 367899999999986621 1267899
Q ss_pred EEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 396 IQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 396 v~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
++|.++|+++.|++++|..+++ +|+
T Consensus 66 ~~a~~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 66 VIALTDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp EEESSSEEEEEEEHHHHHHHHHHSHH
T ss_pred EEEccCEEEEEEeHHHHHHHHHhCcC
Confidence 9999999999999999999999 885
No 14
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.31 E-value=1.1e-11 Score=128.46 Aligned_cols=107 Identities=18% Similarity=0.290 Sum_probs=93.8
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
++++|+|++++++.+..++..++.+.|.+||+|+++||+.+.+|+|++|.|+++.. ..+| +. .+..+++|++
T Consensus 10 L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~----~~~g-e~---~l~~l~~Gd~ 81 (413)
T PLN02868 10 LGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGP----AEEE-SR---PEFLLKRYDY 81 (413)
T ss_pred HhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEE----CCCC-cE---EEEEeCCCCE
Confidence 78899999999999999999999999999999999999999999999999999982 1233 21 4678899999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS 417 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~ 417 (447)
|||. + ...++.++++|.++|+++.|++++|..+..
T Consensus 82 fG~~-l---------~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~ 116 (413)
T PLN02868 82 FGYG-L---------SGSVHSADVVAVSELTCLVLPHEHCHLLSP 116 (413)
T ss_pred eehh-h---------CCCCcccEEEECCCEEEEEEcHHHHhhhcc
Confidence 9975 3 123578999999999999999999988876
No 15
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.29 E-value=3.1e-11 Score=114.78 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=82.9
Q ss_pred HHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCC
Q 036610 308 GYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSS 387 (447)
Q Consensus 308 ~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~ 387 (447)
.+|....+.+.|++||.|+++||+.+.+|||.+|.|+++.. ..+|.+. .+..+.||++|||..+ +
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~----~~~G~e~---~~~~~~~g~~~G~~~~---~----- 89 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYAT----LANGKVS---LIDFFAAPCFIGEIEL---I----- 89 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEE----CCCCCEe---eeeecCCCCeEEeehh---h-----
Confidence 34777788899999999999999999999999999999983 2345432 3578999999999864 1
Q ss_pred CCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 388 NLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 388 ~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+..+++.+++|+++|+++.+++++|..++. .|.
T Consensus 90 ~~~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~ 123 (226)
T PRK10402 90 DKDHETKAVQAIEECWCLALPMKDCRPLLLNDAL 123 (226)
T ss_pred cCCCCCccEEEeccEEEEEEEHHHHHHHHhcCHH
Confidence 234678999999999999999999999999 887
No 16
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.23 E-value=2.1e-11 Score=118.77 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=94.0
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
+++.-+|++++++.+..+...|.++.+++|+.|++|||.+|.+|+|.+|+++|+. . |. .+..++||..
T Consensus 124 ~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv------~-~~-----~v~~~~~g~s 191 (368)
T KOG1113|consen 124 FRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYV------N-GT-----YVTTYSPGGS 191 (368)
T ss_pred HHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEE------C-Ce-----EEeeeCCCCc
Confidence 6777899999999999999999999999999999999999999999999999999 2 32 3689999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS 417 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~ 417 (447)
|||.++.+ .+|+.+|+.|.+++.++.|++..|..++-
T Consensus 192 FGElALmy--------n~PRaATv~a~t~~klWgldr~SFrrIi~ 228 (368)
T KOG1113|consen 192 FGELALMY--------NPPRAATVVAKSLKKLWGLDRTSFRRIIM 228 (368)
T ss_pred hhhhHhhh--------CCCcccceeeccccceEEEeeceeEEEee
Confidence 99998732 36899999999999999999988866553
No 17
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.18 E-value=3.6e-10 Score=107.79 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=77.6
Q ss_pred HHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCC
Q 036610 310 LCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNL 389 (447)
Q Consensus 310 L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~ 389 (447)
++...+.+.|++||+|+++||+++.+|||.+|.|+++.. ..+|++. .+..+.+||+||+.. .
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~----~~~G~e~---i~~~~~~Gd~fG~~~-----------~ 95 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRL----LSDGRRQ---IGAFHLPGDVFGLES-----------G 95 (230)
T ss_pred ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEE----CCCCcEE---EEEEecCCceecccC-----------C
Confidence 445567789999999999999999999999999999982 2445432 357789999999741 1
Q ss_pred CCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 390 PISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 390 ~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
.++..+++|+++|+++.++.++|+.++. .|+
T Consensus 96 ~~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~ 127 (230)
T PRK09391 96 STHRFTAEAIVDTTVRLIKRRSLEQAAATDVD 127 (230)
T ss_pred CcCCeEEEEcCceEEEEEEHHHHHHHHhhChH
Confidence 2467899999999999999999999999 887
No 18
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.17 E-value=1.8e-11 Score=124.17 Aligned_cols=105 Identities=20% Similarity=0.336 Sum_probs=95.7
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
+.+..|+++++++.+.+++.+|-+..|.+|+.|++|||+++++|.+.+|+++|.+ +|. .+..+++|..
T Consensus 156 i~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~-------~g~-----ll~~m~~gtv 223 (732)
T KOG0614|consen 156 IQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR-------EGK-----LLGKMGAGTV 223 (732)
T ss_pred HHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee-------CCe-----eeeccCCchh
Confidence 7778889999999999999999999999999999999999999999999999998 333 3789999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS 417 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~ 417 (447)
|||.++++ + .+++|||+|++++.+++|+++.|+.++.
T Consensus 224 FGELAILy-------n-ctRtAsV~alt~~~lWaidR~vFq~IM~ 260 (732)
T KOG0614|consen 224 FGELAILY-------N-CTRTASVRALTDVRLWAIDREVFQAIMM 260 (732)
T ss_pred hhHHHHHh-------C-CcchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99998743 2 3689999999999999999999999886
No 19
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.12 E-value=6.9e-10 Score=102.31 Aligned_cols=86 Identities=15% Similarity=0.195 Sum_probs=70.0
Q ss_pred CCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEEEEcce
Q 036610 322 RTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALTD 401 (447)
Q Consensus 322 ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~ 401 (447)
|+.|+++||+.+.+|+|.+|.|+++.. ..+|.+. .+..++||++|||..+ +. ....++..+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~----~~~G~e~---~l~~~~~g~~~G~~~~---~~---~~~~~~~~~~~A~~~ 67 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRV----YESGEEI---TVALLRENSVFGVLSL---IT---GHRSDRFYHAVAFTR 67 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEe----CCCCcEe---eeEEccCCCEeeeeee---cc---CCCCccceEEEEecc
Confidence 789999999999999999999999983 2445442 3688999999999865 11 111234578999999
Q ss_pred EEEEEEcHhhHHHHHh-CHH
Q 036610 402 VEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 402 ~el~~L~~~dl~~ll~-f~~ 420 (447)
|+++.+++++|++++. .|.
T Consensus 68 ~~v~~i~~~~~~~l~~~~p~ 87 (193)
T TIGR03697 68 VELLAVPIEQVEKAIEEDPD 87 (193)
T ss_pred eEEEEeeHHHHHHHHHHChH
Confidence 9999999999999999 888
No 20
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.11 E-value=1.1e-10 Score=106.98 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=96.8
Q ss_pred CCCcceeEeeeecCCcceeeeeeeecCCchh-hHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHH
Q 036610 3 LGSISRVVSKIAIPPIPSVLVIFGIRGTEFS-TAMTFFVLQYLLRVIRTYFVFTEAIEGSGVIADATWVIFAFYVLLYLQ 81 (447)
Q Consensus 3 ~~~~~F~~Dlla~lP~~~i~~~~~~~~~~~~-~~~~~~l~~~l~Rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l 81 (447)
++++|.++|+++++|.+...+....+..+.. ..+... +.++.|++|+.+.++.+.+..+.+. .+.......++++++
T Consensus 29 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 106 (200)
T PF00520_consen 29 FRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFR-LLRLLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFI 106 (200)
T ss_dssp CCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHH-HHHHHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred hcChhhcccccccccccccccccccccccccceEEEEE-eeccccccccccccccccccccccc-ccccccccccccccc
Confidence 5788999999999999755543221111100 012221 1244455555555544444322222 122222333445667
Q ss_pred HHHHHHHHHHhHhhhhHhHHHHHhhcCCCCCcceeeecCCCCCCcccccccCCCCCCCCCccccchhhhhhhcCccccch
Q 036610 82 SGHMFGALWYYYAIRKVTECWREACKNHTGCGHISFACNGSFGDYNFLNDFCPISTGSTTRYSFGLYNDALQSGIVAETD 161 (447)
Q Consensus 82 ~~H~~~c~Wy~~~~~~~~~c~~~~~~~~~~c~~~~l~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s 161 (447)
..|+.||+|+.+.-.....| |.+ .+-. .++ ..+.+
T Consensus 107 ~~~~~a~~~~~lf~~~~~~~----------~~~------------~~~~--------~~~---------------~~~~~ 141 (200)
T PF00520_consen 107 VLLFFACIGYQLFGGSDNSC----------CDP------------TWDS--------END---------------IYGYE 141 (200)
T ss_dssp HHHHHHHHHHHHHTTTS-----------------------------SS---------------------------SSTHH
T ss_pred ccccccchhheecccccccc----------ccc------------cccc--------ccc---------------ccccc
Confidence 88999999998864322111 100 0000 000 12344
Q ss_pred hHHHHHHHHHHHHHhhcccCCCccCCC-----ChhhHHHH-HHHHHHHHHHHHHHHHHh
Q 036610 162 FLKKLLHCLHWGLQKLSAFGQDLETSD-----DVGENIFA-IWMTIYGVVLFVFLIGRM 214 (447)
Q Consensus 162 ~~~~Y~~slYwa~~tltTvG~g~~~~~-----~~~E~~f~-i~~mi~G~~~fa~iiG~v 214 (447)
..+.|..|+||+++++|+.|++++.+. +..+.++. +++.+.+.++++.+||+|
T Consensus 142 ~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 142 NFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 566899999999999999999877765 67899999 566667779999999986
No 21
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.06 E-value=1.8e-09 Score=100.34 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=69.2
Q ss_pred ccEeEEecCCCeeEccCC--CcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCC
Q 036610 313 FLKPVLFIERTRIIRAGD--PIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLP 390 (447)
Q Consensus 313 ~l~~~~~~~ge~I~~eGd--~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~ 390 (447)
..+...|++|++|+++|| +.+.+|+|++|.|+++.. ..||.+. .+..+.|||+|||..+ + . .
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~----~~~G~e~---~l~~~~~Gd~~G~~~~---~-----~-~ 68 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTV----DDEGNAL---TLRYVRPGEYFGEEAL---A-----G-A 68 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEE----CCCCCEE---EEEEecCCCeechHHh---c-----C-C
Confidence 467789999999999999 779999999999999983 3455542 4678899999999754 1 1 3
Q ss_pred CCccEEEEcceEEEEEEcHhhH
Q 036610 391 ISNKTIQALTDVEAFTLIADDL 412 (447)
Q Consensus 391 ~~~~tv~Alt~~el~~L~~~dl 412 (447)
+++.+++|+++|+++.+++++|
T Consensus 69 ~~~~~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 69 ERAYFAEAVTDSRIDVLNPALM 90 (202)
T ss_pred CCCceEEEcCceEEEEEEHHHc
Confidence 5678999999999999998876
No 22
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.06 E-value=1.4e-09 Score=112.03 Aligned_cols=109 Identities=19% Similarity=0.235 Sum_probs=96.4
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
+.++|.|..++++.+.+|...+....|.+||.|+..|.+.+.+|+|.+|.|++.. .+|. .+..+..||.
T Consensus 9 l~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~------~~g~-----v~~~~~~gdl 77 (610)
T COG2905 9 LQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS------DGGE-----VLDRLAAGDL 77 (610)
T ss_pred HhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc------CCCe-----eeeeeccCcc
Confidence 7899999999999999999999999999999999999999999999999999998 4554 3689999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
||-.++ ++ .. +....+.|.+|+-+|.|+++.|.+++. +|.
T Consensus 78 Fg~~~l---~~----~~-~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~ 118 (610)
T COG2905 78 FGFSSL---FT----EL-NKQRYMAAEEDSLCYLLPKSVFMQLMEENPE 118 (610)
T ss_pred ccchhh---cc----cC-CCcceeEeeccceEEecCHHHHHHHHHhCcH
Confidence 999876 21 12 234567888899999999999999999 887
No 23
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.04 E-value=2.5e-10 Score=111.33 Aligned_cols=117 Identities=16% Similarity=0.209 Sum_probs=102.0
Q ss_pred HHHHccCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccc
Q 036610 283 KRLIGRTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRS 362 (447)
Q Consensus 283 ~~~l~~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~ 362 (447)
+..++.+. |+++|+++.++......+++.+.+..|.+|+.|+.+|++++.+|+|.+|.|.+... .+| .
T Consensus 234 krkMy~~~--l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~-----~~~-v---- 301 (368)
T KOG1113|consen 234 KRKMYEPF--LESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKK-----RDG-V---- 301 (368)
T ss_pred hhhhhhhh--hhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhc-----cCC-e----
Confidence 44577788 99999999999999999999999999999999999999999999999999999983 233 1
Q ss_pred eeeecCCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 363 RENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 363 ~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
.+ .+++||+|||.++. ...++.+||.|.+...+..++++.|+.++. ...
T Consensus 302 ~v-kl~~~dyfge~al~--------~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~d 351 (368)
T KOG1113|consen 302 EV-KLKKGDYFGELALL--------KNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQD 351 (368)
T ss_pred EE-EechhhhcchHHHH--------hhchhhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence 24 89999999998772 223689999999999999999999999987 443
No 24
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.82 E-value=3.9e-09 Score=107.39 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 036610 168 HCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRM 214 (447)
Q Consensus 168 ~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v 214 (447)
.|+|||+.|||||||||..|.|..=++++....+.|+++-|+=|--|
T Consensus 380 a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiI 426 (477)
T KOG3713|consen 380 AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITII 426 (477)
T ss_pred chhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhH
Confidence 68899999999999999999888999999999999999998755443
No 25
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.80 E-value=1.4e-08 Score=80.29 Aligned_cols=52 Identities=15% Similarity=0.367 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.|..|+||+++|+||+||||+.|++...++++++.+++|..++++.++++.+
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~ 75 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLAS 75 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999989889999999999999999999998865
No 26
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.57 E-value=9.4e-07 Score=90.82 Aligned_cols=87 Identities=14% Similarity=0.254 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHhhHHHHhcccccccc
Q 036610 161 DFLKKLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI---ETARSQKINPRWQGLKQSKHY 237 (447)
Q Consensus 161 s~~~~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~---~~~~~k~~v~~~m~~~~~~~~ 237 (447)
+.+.-|.-|+||++.|+|||||||.+|.+..-++.+.+.-++|+.+||.--|-+++ -+++.++|-++|. +.+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQKHf~-----rrr 339 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQKHFN-----RRR 339 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHH-----hhc
Confidence 34568999999999999999999999999889999999999999999987777666 4555555567788 888
Q ss_pred CCCHhHHHHHHHHHH
Q 036610 238 AVISGDRKVLRKFKK 252 (447)
Q Consensus 238 ~lp~~L~~rv~~y~~ 252 (447)
+.-..|-+-.=+||.
T Consensus 340 ~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 340 NPAASLIQCAWRYYA 354 (654)
T ss_pred chHHHHHHHHHHHHh
Confidence 777777766666554
No 27
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.26 E-value=5.4e-08 Score=95.02 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=39.1
Q ss_pred HHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHH
Q 036610 168 HCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLI 211 (447)
Q Consensus 168 ~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~ii 211 (447)
.|+|||+.|||||||||..|.+++-+++..+.-|.|++--|.-+
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPV 439 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPV 439 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccc
Confidence 57899999999999999999999999999988889988777643
No 28
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.95 E-value=1.2e-05 Score=82.66 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.+..|+||++.|+||+||||+.|.+...++|++++++.|+.+|++.++.+..
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999998888889999999999999999999988765
No 29
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.93 E-value=1.6e-05 Score=85.97 Aligned_cols=113 Identities=18% Similarity=0.168 Sum_probs=87.0
Q ss_pred HHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccC
Q 036610 306 SLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDES 385 (447)
Q Consensus 306 ~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~ 385 (447)
+++.+-..+.-....+|+.++++||.+|++|+|++|.++.... ..|+++.+ +...+.||.+|+...+
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~-----~~~~k~~i--~~EygrGd~iG~~E~l------ 566 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIR-----QSGGKKEI--VGEYGRGDLIGEVEML------ 566 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhh-----ccCccchh--hhhccCcceeehhHHh------
Confidence 4555555566788999999999999999999999999997763 34444333 5789999999997542
Q ss_pred CCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHHHHHHHHHHHHHHHH
Q 036610 386 SSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRRNQAALFLQSYWRFR 434 (447)
Q Consensus 386 ~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~~~~~~~q~~~~~~ 434 (447)
...++..|+.|+.++|+..|+.--|..+.. +|. ...++++.+.+..
T Consensus 567 --t~~~R~tTv~AvRdSelariPe~l~~~ik~ryP~-v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 567 --TKQPRATTVMAVRDSELARIPEGLLNFIKLRYPQ-VVTRLIKLLAEKI 613 (1158)
T ss_pred --hcCCccceEEEEeehhhhhccHHHHHHHHHhccH-HHHHHHHHHHHHh
Confidence 224678899999999999999999999998 888 2334555544443
No 30
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=97.83 E-value=5.4e-07 Score=88.81 Aligned_cols=51 Identities=10% Similarity=0.317 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHH----HHHHhhH
Q 036610 166 LLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVF----LIGRMQI 216 (447)
Q Consensus 166 Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~----iiG~v~~ 216 (447)
--.++|+++.||||.||||..+.++.-++|..+.-+.|+++.|. |+.|.+-
T Consensus 357 IPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSR 411 (632)
T KOG4390|consen 357 IPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSR 411 (632)
T ss_pred CcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhH
Confidence 34688999999999999999988899999999999999998876 4455544
No 31
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.72 E-value=0.00017 Score=72.44 Aligned_cols=52 Identities=12% Similarity=0.201 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhcccCCCc--cCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDL--ETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~--~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.+..+|++++.|+||+|||. +++.+..=.+..++=+++|.++.|+++|-+-+
T Consensus 84 ~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfa 137 (336)
T PF01007_consen 84 SFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFA 137 (336)
T ss_dssp THHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999987 44555433444556678899999999998765
No 32
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.00062 Score=69.21 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHhhHHHHh
Q 036610 162 FLKKLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI--ETARSQKINPRWQ 229 (447)
Q Consensus 162 ~~~~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~--~~~~~k~~v~~~m 229 (447)
...-|+-|++....|..++||||+.|++.--+..+++.-++|+++-|.+|.-|+- +.-+..++|++||
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLeLt~aEKhVhNFM 353 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLELTKAEKHVHNFM 353 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999988889999999999999999999998876 2223333366666
No 33
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.56 E-value=0.00038 Score=75.63 Aligned_cols=116 Identities=13% Similarity=0.105 Sum_probs=87.0
Q ss_pred HHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhccc-CCCC
Q 036610 310 LCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDE-SSSN 388 (447)
Q Consensus 310 L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~-~~~~ 388 (447)
++.+++...+..||+|++.|++.+.+|.+.+|.+++.. .+|..+.. .+.+..||+-|--.. ..++- +...
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~------~~~~g~~~-llk~V~~G~~~tSll--SiLd~l~~~p 181 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHI------RNGDGKEY-LLKTVPPGGSFTSLL--SILDSLPGFP 181 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEe------cCCCCcee-eEeeccCCCchHhHH--HHHHhccCCC
Confidence 34777888899999999999999999999999999888 44332222 468889997776532 12332 1111
Q ss_pred CCCCccEEEEcceEEEEEEcHhhHHHHHh-CHHHHHHHHHHHHHHHHH
Q 036610 389 LPISNKTIQALTDVEAFTLIADDLKHVLS-FRRNQAALFLQSYWRFRE 435 (447)
Q Consensus 389 ~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~~~~~~~q~~~~~~~ 435 (447)
.......++|.++|.+..++...|.++.. ||+.|.+ .+|...-+++
T Consensus 182 s~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~ir-iiQvvmTRLq 228 (1158)
T KOG2968|consen 182 SLSRTIAAKAATDCTVARIPYTSFRESFHKNPESSIR-IIQVVMTRLQ 228 (1158)
T ss_pred cccceeeeeeecCceEEEeccchhhhhhccChHHHHH-HHHHHHHHHH
Confidence 12456679999999999999999999999 9997765 6777776655
No 34
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.30 E-value=0.00051 Score=71.25 Aligned_cols=52 Identities=12% Similarity=0.265 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.|-.|+|+.+.||+||||||+-..++.-+.|.++.++.|..+||--+-.+..
T Consensus 288 tyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiie 339 (1103)
T KOG1420|consen 288 TYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIE 339 (1103)
T ss_pred hhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5889999999999999999999988899999999999999999976555433
No 35
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.00079 Score=69.19 Aligned_cols=52 Identities=12% Similarity=0.314 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
-+.-|+|++++++||+|||++.|.+...++|+|+.-++|+=++..+++++..
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~ 166 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGK 166 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678999999999999999988888889999999999999999999999877
No 36
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.92 E-value=0.037 Score=48.71 Aligned_cols=117 Identities=16% Similarity=0.126 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHhc-cEeEEecCCCeeEccCC-CcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhh
Q 036610 301 NWSEKSLGYLCEF-LKPVLFIERTRIIRAGD-PIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELI 378 (447)
Q Consensus 301 ~l~~~~l~~L~~~-l~~~~~~~ge~I~~eGd-~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l 378 (447)
++|....+.|+.+ .+.....+||.-..||. +.|.+-++++|++.|.. +|. .+..+.|-+|..--.
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~-------~g~-----fLH~I~p~qFlDSPE- 80 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC-------DGR-----FLHYIYPYQFLDSPE- 80 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE-------CCE-----eeEeecccccccChh-
Confidence 7889999999888 56678899999999986 57899999999999998 443 257777777665432
Q ss_pred HhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHHHHHHHHHHHHHHH
Q 036610 379 AWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRRNQAALFLQSYWRF 433 (447)
Q Consensus 379 ~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~~~~~~~q~~~~~ 433 (447)
|-..+ .+....-..|+.|.++|..+..+|+.|+.++. .|. .++.+-....++
T Consensus 81 -W~s~~-~s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~-L~~vF~~liGkD 133 (153)
T PF04831_consen 81 -WESLR-PSEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPF-LAAVFSNLIGKD 133 (153)
T ss_pred -hhccc-cCCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHH-HHHHHHHHHHHH
Confidence 21111 11223457899999999999999999999999 665 334344444333
No 37
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.50 E-value=0.078 Score=49.50 Aligned_cols=107 Identities=8% Similarity=0.022 Sum_probs=73.4
Q ss_pred HHHHHHhccEeEEecCCCee-EccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhccc
Q 036610 306 SLGYLCEFLKPVLFIERTRI-IRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDE 384 (447)
Q Consensus 306 ~l~~L~~~l~~~~~~~ge~I-~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~ 384 (447)
..+.+....++..+.+|..+ +-+.+..+..+++.+|.+.+.. .||- .+.+..+-..||=... .
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr------~d~l-----l~~t~~aP~IlGl~~~---~-- 77 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR------EENV-----LIGITQAPYIMGLADG---L-- 77 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe------cCCe-----EEEeccCCeEeecccc---c--
Confidence 45556666777899999997 5444444779999999999955 5542 3577788888886422 1
Q ss_pred CCCCCCCCccEEEEcceEEEEEEcHhhHHHHHhCHHHHHHHHHHHHH
Q 036610 385 SSSNLPISNKTIQALTDVEAFTLIADDLKHVLSFRRNQAALFLQSYW 431 (447)
Q Consensus 385 ~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~f~~~~~~~~~q~~~ 431 (447)
.+ .......+|.++|+++.++.+++.++++-..-|.....-.+|
T Consensus 78 --~~-~~~~~~l~ae~~c~~~~i~~~~~~~iie~~~LW~~~~~~l~~ 121 (207)
T PRK11832 78 --MK-NDIPYKLISEGNCTGYHLPAKQTITLIEQNQLWRDAFYWLAW 121 (207)
T ss_pred --CC-CCceEEEEEcCccEEEEeeHHHHHHHHHHhchHHHHHHHHHH
Confidence 11 122367999999999999999999999822233333333334
No 38
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.25 E-value=0.0055 Score=64.87 Aligned_cols=107 Identities=17% Similarity=0.232 Sum_probs=83.9
Q ss_pred CcccccccccccCCCHHHHHHHHhccEeEE-ecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeec
Q 036610 289 THLEKMQVNEFENWSEKSLGYLCEFLKPVL-FIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHL 367 (447)
Q Consensus 289 ~~~~L~~vplF~~l~~~~l~~L~~~l~~~~-~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l 367 (447)
++ ....|-|.+++-..-+++|..|.... =.+|.+|..-|+.-|.-+.|++|.|+|.. +||++ ..+
T Consensus 281 eF--MhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~------PdGk~------e~l 346 (1283)
T KOG3542|consen 281 EF--MHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK------PDGKR------EEL 346 (1283)
T ss_pred HH--HHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec------CCCce------EEe
Confidence 55 67889999999999999998886544 36899999999999999999999999999 89876 456
Q ss_pred CCCCeechhhhHhhcccCCCCCCCCccEEE-EcceEEEEEEcHhhHHHHHh
Q 036610 368 EDGDFFGKELIAWAQDESSSNLPISNKTIQ-ALTDVEAFTLIADDLKHVLS 417 (447)
Q Consensus 368 ~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~-Alt~~el~~L~~~dl~~ll~ 417 (447)
.-|+-||...- .....-..-++ -+.||+...+...|+-.++.
T Consensus 347 ~mGnSFG~~PT--------~dkqym~G~mRTkVDDCqFVciaqqDycrIln 389 (1283)
T KOG3542|consen 347 KMGNSFGAEPT--------PDKQYMIGEMRTKVDDCQFVCIAQQDYCRILN 389 (1283)
T ss_pred ecccccCCCCC--------cchhhhhhhhheecccceEEEeehhhHHHHHH
Confidence 66999997632 11111112233 35689999999999988887
No 39
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=95.53 E-value=0.047 Score=54.82 Aligned_cols=57 Identities=23% Similarity=0.469 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhcccCCCc--cCCCChhhHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHh
Q 036610 166 LLHCLHWGLQKLSAFGQDL--ETSDDVGENIFAI-WMTIYGVVLFVFLIGRMQIETARSQK 223 (447)
Q Consensus 166 Y~~slYwa~~tltTvG~g~--~~~~~~~E~~f~i-~~mi~G~~~fa~iiG~v~~~~~~~k~ 223 (447)
...||-|++-|=||+|||. ++.... |.+|.+ +=+|+|+++-|+++|.|-+.-.+-|+
T Consensus 113 f~sAFLFSiETQtTIGYG~R~vTeeCP-~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkK 172 (400)
T KOG3827|consen 113 FTSAFLFSIETQTTIGYGFRYVTEECP-EAIFLLVLQSILGVIINAFMVGAIFAKIARPKK 172 (400)
T ss_pred hhhhheeeeeeeeeeeccccccCccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 5677888899999999985 444454 666665 45778999999999998773333333
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=92.60 E-value=0.027 Score=55.23 Aligned_cols=42 Identities=17% Similarity=0.375 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVL 206 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~ 206 (447)
+..-|||||.|.+||+|||-.+|.|.+-++|+|+.-++|.-+
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl 121 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPL 121 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCch
Confidence 567799999999999999988888889999999988876533
No 41
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.58 E-value=1.4 Score=48.64 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=50.1
Q ss_pred HHHHH--hhcCHHHHHHHHHHHccCcc---cccccccccCCCHHHHHHHHhccEeEE------e-------------cCC
Q 036610 267 INSFL--SDLSQDAANEVKRLIGRTHL---EKMQVNEFENWSEKSLGYLCEFLKPVL------F-------------IER 322 (447)
Q Consensus 267 e~~il--~~Lp~~Lr~ei~~~l~~~~~---~L~~vplF~~l~~~~l~~L~~~l~~~~------~-------------~~g 322 (447)
.++.+ +.||++||+.|..|...+.. .+..-.+++++|++.-++|+.++-... | .=.
T Consensus 364 ~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk 443 (727)
T KOG0498|consen 364 AEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLK 443 (727)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhh
Confidence 44454 57999999999998875541 145567899999999999988773211 1 112
Q ss_pred CeeEccCCCcCeEEEEEeeEEE
Q 036610 323 TRIIRAGDPIDEMIFVLKGKLW 344 (447)
Q Consensus 323 e~I~~eGd~~~~myfI~~G~v~ 344 (447)
..++.+|| |+|.+|.+-
T Consensus 444 ~~~f~pge-----~iireGd~v 460 (727)
T KOG0498|consen 444 PEYFTPGE-----YIIREGDPV 460 (727)
T ss_pred hhccCCCC-----eEEecCCcc
Confidence 33555665 889888764
No 42
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=91.99 E-value=0.13 Score=54.95 Aligned_cols=89 Identities=18% Similarity=0.174 Sum_probs=70.0
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
|.....|+++-..-++.++...+...++...++|+.||.+..-|++++|.|-|.. ...-|...
T Consensus 39 lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g-----------------qi~mp~~~ 101 (1283)
T KOG3542|consen 39 LHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG-----------------QIYMPYGC 101 (1283)
T ss_pred HhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec-----------------ceecCccc
Confidence 6777889999999999999999999999999999999999999999999997655 12334445
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIA 409 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~ 409 (447)
||... ...++.++-.++++|..+++.
T Consensus 102 fgkr~-----------g~~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 102 FGKRT-----------GQNRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred ccccc-----------ccccccceeeecccceeeeec
Confidence 66541 123566777778888877743
No 43
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=90.03 E-value=0.17 Score=49.79 Aligned_cols=50 Identities=10% Similarity=0.162 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCCh-------hh-HHHHHHHHHHHHHHHHHHHHHh
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDV-------GE-NIFAIWMTIYGVVLFVFLIGRM 214 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~-------~E-~~f~i~~mi~G~~~fa~iiG~v 214 (447)
.|+-|+|+-+.|+||+|+||..+... .+ +.|+.+.+++|+.+++..+.-+
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~Nll 243 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLL 243 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999988665321 23 3556667778998887655443
No 44
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=89.63 E-value=0.06 Score=55.21 Aligned_cols=47 Identities=11% Similarity=0.209 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhH--------HHHHHHHHHHHHHHHHHH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGEN--------IFAIWMTIYGVVLFVFLI 211 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~--------~f~i~~mi~G~~~fa~ii 211 (447)
-|+.|+|+++.|+||+|+||+.|.+...+ .+..+..++|....+.+.
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 58899999999999999999888775433 466667777877777654
No 45
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=84.04 E-value=1.9 Score=39.37 Aligned_cols=48 Identities=8% Similarity=0.144 Sum_probs=39.5
Q ss_pred cCCCHhHHHHHHHHHHHHHHhhhccccchhHHHHHhhc--CHHHHHHHHHHH
Q 036610 237 YAVISGDRKVLRKFKKAKRENLVNKHVDVHINSFLSDL--SQDAANEVKRLI 286 (447)
Q Consensus 237 ~~lp~~L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~L--p~~Lr~ei~~~l 286 (447)
+++|++-++++.+||+-+.......|.+ |+++.++| |.++-+++....
T Consensus 15 ~~lp~~e~~e~l~~Y~e~f~d~~~~G~s--Eeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 15 KKLPEEEREEILEYYEEYFDDAGEEGKS--EEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhhCCCC--HHHHHHHcCCHHHHHHHHHHhh
Confidence 4799999999999999888864455667 99999997 888888877654
No 46
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=82.91 E-value=1.8 Score=32.36 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=32.5
Q ss_pred EEecCCCeeEccCCCcC-eEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 317 VLFIERTRIIRAGDPID-EMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 317 ~~~~~ge~I~~eGd~~~-~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
..+.||+..-..-.+.. ++++|++|++++.. +|. ...+++||.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-------~~~------~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-------DGE------RVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE-------TTE------EEEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE-------ccE------EeEccCCEEE
Confidence 45778886655555666 99999999999886 333 3678888864
No 47
>COG4709 Predicted membrane protein [Function unknown]
Probab=82.12 E-value=3.4 Score=37.74 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=51.0
Q ss_pred cCCCHhHHHHHHHHHHHHHHhhhccccchhHHHHHhhc--CHHHHHHHHHHHccCcccccccccccCCCHHHHH
Q 036610 237 YAVISGDRKVLRKFKKAKRENLVNKHVDVHINSFLSDL--SQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLG 308 (447)
Q Consensus 237 ~~lp~~L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~L--p~~Lr~ei~~~l~~~~~~L~~vplF~~l~~~~l~ 308 (447)
.++|++.++.+..+|+-++..-.-.|.+ |+++..+| |+++-+|+....-.+- .+.-|-+++.+..-+.
T Consensus 15 ~~Lp~~~r~e~m~dyeehF~~a~~~Gks--E~EI~~~LG~P~eiA~ei~s~~~~k~--~~~~~~~~n~~~aii~ 84 (195)
T COG4709 15 EGLPREERREIMYDYEEHFREAQEAGKS--EEEIAKDLGDPKEIAAEILSERGIKK--EEVKPTQKNVRRAIIA 84 (195)
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhhcCCC--HHHHHHHhCCHHHHHHHHHHHccchH--HhccCcccchHHHHHH
Confidence 7899999999999999888763345566 99999987 8888888887765554 5555666666554433
No 48
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=82.00 E-value=2 Score=33.18 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=29.9
Q ss_pred ecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 319 FIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 319 ~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
..||..-..-. .+++.+|++|.+.+.. .+|. ...+++||.|=
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it~------~~G~------~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTITD------EDGE------TVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEEE------TTTE------EEEEETTEEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEEE------CCCC------EEEEcCCcEEE
Confidence 34555444332 2889999999999998 5554 37899999764
No 49
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=77.75 E-value=4.8 Score=33.59 Aligned_cols=47 Identities=21% Similarity=0.184 Sum_probs=35.5
Q ss_pred cCCCHhHHHHHHHHHHHHHHhhh--------ccccchhHHHHHhhcCHHHHHHHHHH
Q 036610 237 YAVISGDRKVLRKFKKAKRENLV--------NKHVDVHINSFLSDLSQDAANEVKRL 285 (447)
Q Consensus 237 ~~lp~~L~~rv~~y~~~~w~~~~--------~~~~d~~e~~il~~Lp~~Lr~ei~~~ 285 (447)
.-+|+++|..|...+...-.... ....| ...+|..||++||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d--~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMD--NASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCC--HHHHHHhCCHHHHHHHhhc
Confidence 56899999999999875533310 22344 7789999999999999764
No 50
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=69.53 E-value=26 Score=29.97 Aligned_cols=70 Identities=9% Similarity=0.101 Sum_probs=42.0
Q ss_pred EeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCcc
Q 036610 315 KPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNK 394 (447)
Q Consensus 315 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~ 394 (447)
....+.||..+-.--....++++|++|++++.. .++++ ...+++||.+--.+ + .+.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~------i~~g~-----~~~L~aGD~i~~~~----------~---~~H 93 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVED------LATGE-----VHPIRPGTMYALDK----------H---DRH 93 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEE------cCCCE-----EEEeCCCeEEEECC----------C---CcE
Confidence 445778887553221222479999999999883 23233 47899999765321 1 123
Q ss_pred EEEEcceEEEEEEc
Q 036610 395 TIQALTDVEAFTLI 408 (447)
Q Consensus 395 tv~Alt~~el~~L~ 408 (447)
.+++.++++++.+-
T Consensus 94 ~~~N~e~~~~l~v~ 107 (125)
T PRK13290 94 YLRAGEDMRLVCVF 107 (125)
T ss_pred EEEcCCCEEEEEEE
Confidence 44444777766653
No 51
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=67.27 E-value=1.3 Score=46.48 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHH
Q 036610 166 LLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTI 201 (447)
Q Consensus 166 Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi 201 (447)
-..|+|+.+.|++||||||-.|......++. ++||
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~-vi~i 252 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCV-VILI 252 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHHH-HHHH
Confidence 3468899999999999999877654444433 3343
No 52
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=66.06 E-value=18 Score=32.41 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=33.2
Q ss_pred EeEEe-cCCCee-EccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 315 KPVLF-IERTRI-IRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 315 ~~~~~-~~ge~I-~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
+...+ .||+.- ++..+ .+++|++++|.+.+.. .++++. ....+++||+|=
T Consensus 30 ~v~~vgGpn~R~d~H~~~-tdE~FyqleG~~~l~v------~d~g~~---~~v~L~eGd~fl 81 (159)
T TIGR03037 30 MVTVVGGPNARTDFHDDP-GEEFFYQLKGEMYLKV------TEEGKR---EDVPIREGDIFL 81 (159)
T ss_pred EEEEeCCCCCCcccccCC-CceEEEEEcceEEEEE------EcCCcE---EEEEECCCCEEE
Confidence 33344 444443 66644 7999999999999987 454321 246889999763
No 53
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=62.82 E-value=21 Score=30.32 Aligned_cols=50 Identities=22% Similarity=0.231 Sum_probs=39.7
Q ss_pred cEeEEecCCCeeEccCCC-cCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechh
Q 036610 314 LKPVLFIERTRIIRAGDP-IDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKE 376 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~ 376 (447)
+....+.||+.+-.--.+ .+...+|++|.+++.. . |. ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~------~-g~------~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL------E-GE------KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEe------c-CC------ceEecCCCEEEEC
Confidence 345678999988877776 7799999999999988 3 43 3689999998764
No 54
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=60.31 E-value=23 Score=30.17 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=34.9
Q ss_pred ccEeEEecCCCee-EccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 313 FLKPVLFIERTRI-IRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 313 ~l~~~~~~~ge~I-~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
..+...+.||+-+ .+--...+++|+|++|...+.. . | + ...+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~------~-~-~-----~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI------G-G-E-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE------C-C-E-----EEEecCCCEE
Confidence 4556678888875 5555557999999999999998 2 2 2 3567788754
No 55
>PLN03223 Polycystin cation channel protein; Provisional
Probab=59.88 E-value=1.5e+02 Score=35.54 Aligned_cols=24 Identities=21% Similarity=0.240 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 193 NIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 193 ~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
..|..+++++..++.-++||-|..
T Consensus 1397 IYFfSFILLV~FILLNMFIAII~D 1420 (1634)
T PLN03223 1397 IYFYSYNIFVFMILFNFLLAIICD 1420 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555543
No 56
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=56.62 E-value=21 Score=29.65 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=31.9
Q ss_pred cCCCHhHHHHHHHHHHHHHHhh------------hccccchhHHHHHhhcCHHHHHHHHHHHcc
Q 036610 237 YAVISGDRKVLRKFKKAKRENL------------VNKHVDVHINSFLSDLSQDAANEVKRLIGR 288 (447)
Q Consensus 237 ~~lp~~L~~rv~~y~~~~w~~~------------~~~~~d~~e~~il~~Lp~~Lr~ei~~~l~~ 288 (447)
.-||+++|.+|..-+...-... ....+ ..++|..||++||.||......
T Consensus 7 aaLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I---~pefL~ALP~diR~EVl~qe~~ 67 (108)
T PF14377_consen 7 AALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQI---DPEFLAALPPDIREEVLAQERR 67 (108)
T ss_pred HHCCHHHHHHHHHHHHhhccchhcccCcccccCCCcccc---CHHHHHhCCHHHHHHHHHHHHH
Confidence 3589999999965544321110 00112 3589999999999999876543
No 57
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=54.52 E-value=35 Score=31.12 Aligned_cols=44 Identities=18% Similarity=0.419 Sum_probs=31.0
Q ss_pred cCC-CeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 320 IER-TRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 320 ~~g-e~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
.|| ..-++- ++.+++|++++|.+.+.. .|+++. ....+++||+|
T Consensus 42 Gpn~r~d~H~-~~tdE~FyqleG~~~l~v------~d~g~~---~~v~L~eGd~f 86 (177)
T PRK13264 42 GPNARTDFHY-DPGEEFFYQLEGDMYLKV------QEDGKR---RDVPIREGEMF 86 (177)
T ss_pred cCCccccccc-CCCceEEEEECCeEEEEE------EcCCce---eeEEECCCCEE
Confidence 566 344455 568999999999999888 444321 24678999876
No 58
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=45.74 E-value=30 Score=30.86 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=34.1
Q ss_pred EEecCCC--eeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeech
Q 036610 317 VLFIERT--RIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGK 375 (447)
Q Consensus 317 ~~~~~ge--~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE 375 (447)
..++||. ...+--...++++.|++|+..+.. ||+ ...++|||..|-
T Consensus 47 ~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~-------d~~------e~~lrpGD~~gF 94 (161)
T COG3837 47 EIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE-------DGG------ETRLRPGDSAGF 94 (161)
T ss_pred EEeCCCCccccccccccCceEEEEEcCceEEEE-------CCe------eEEecCCceeec
Confidence 4556654 345556678899999999998876 554 368999999874
No 59
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=44.47 E-value=17 Score=33.72 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=39.9
Q ss_pred hhcCHHHHHHHHHHHccCccccccccccc-CCCHHHHHHHHhccEeEE--ecCCCeeEccCCCcC
Q 036610 272 SDLSQDAANEVKRLIGRTHLEKMQVNEFE-NWSEKSLGYLCEFLKPVL--FIERTRIIRAGDPID 333 (447)
Q Consensus 272 ~~Lp~~Lr~ei~~~l~~~~~~L~~vplF~-~l~~~~l~~L~~~l~~~~--~~~ge~I~~eGd~~~ 333 (447)
..+|+. ..++...+...+ ++-.-.|. ..++....+......+.. +.+||.|+++||..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~--i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNF--IRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhc--CCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 345666 344444444454 44333443 467777888888888887 999999999999765
No 60
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=42.63 E-value=27 Score=25.70 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=17.2
Q ss_pred HHHHHhhcCHHHHHHHHHHH
Q 036610 267 INSFLSDLSQDAANEVKRLI 286 (447)
Q Consensus 267 e~~il~~Lp~~Lr~ei~~~l 286 (447)
.-++++.||.+|+.|+..++
T Consensus 4 ~yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 4 AYELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHHCcHHHHHHHHHHH
Confidence 45689999999999998875
No 61
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=42.49 E-value=79 Score=27.25 Aligned_cols=71 Identities=7% Similarity=0.048 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHhccccccccCCCHhHHHHHHHHHHHHHHhhhccccchhHHHHHhhc
Q 036610 195 FAIWMTIYGVVLFVFLIGRMQIETARSQKINPRWQGLKQSKHYAVISGDRKVLRKFKKAKRENLVNKHVDVHINSFLSDL 274 (447)
Q Consensus 195 f~i~~mi~G~~~fa~iiG~v~~~~~~~k~~v~~~m~~~~~~~~~lp~~L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~L 274 (447)
++++..++|++.|+.-+---.+ +.+.+.+++.|- .++-+=+-|+..=.+++-..|.+ +.. +|.+|+++.
T Consensus 36 ~t~~aa~~gatayG~~~~~~~~-kk~rr~kiEd~~-----a~nai~PiL~AErDr~~l~~lrk--n~e---eEaeiMKdV 104 (146)
T KOG3300|consen 36 MTMFAAVSGATAYGMYQVGQGN-KKRRRLKIEDYA-----ARNAILPILQAERDRRFLSELRK--NLE---EEAEIMKDV 104 (146)
T ss_pred chhhhHHHHHHHHHHHHHHhch-hHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHHHHHH--hHH---HHHHHHccC
Confidence 5556666777666632211111 111111166666 66666667777666666667766 332 267788887
Q ss_pred CH
Q 036610 275 SQ 276 (447)
Q Consensus 275 p~ 276 (447)
|.
T Consensus 105 Pg 106 (146)
T KOG3300|consen 105 PG 106 (146)
T ss_pred CC
Confidence 74
No 62
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=41.92 E-value=73 Score=27.63 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=35.2
Q ss_pred cEeEEecCCCeeEccCCC-cCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 314 LKPVLFIERTRIIRAGDP-IDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
+....+.||...-..-.+ .+++++|++|...+... ..+|.+. ....+++||.+=
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~----~~~~~~~---~~~~l~~GD~~~ 86 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVV----DPNGNKV---YDARLREGDVFV 86 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEE----eCCCCeE---EEEEecCCCEEE
Confidence 444567888876544433 67899999999998872 0112221 246789999764
No 63
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=38.24 E-value=82 Score=26.71 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=29.9
Q ss_pred ecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 319 FIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 319 ~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
..||+.=..-++ ++..-|++|.+++.. ||++ ...+++||.|
T Consensus 52 ~TpG~~r~~y~~--~E~chil~G~v~~T~-------d~Ge-----~v~~~aGD~~ 92 (116)
T COG3450 52 CTPGKFRVTYDE--DEFCHILEGRVEVTP-------DGGE-----PVEVRAGDSF 92 (116)
T ss_pred ecCccceEEccc--ceEEEEEeeEEEEEC-------CCCe-----EEEEcCCCEE
Confidence 456665555554 889999999999887 4443 4789999965
No 64
>PRK11171 hypothetical protein; Provisional
Probab=38.14 E-value=69 Score=31.13 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=31.5
Q ss_pred EeEEecCCCeeEccCCC--cCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 315 KPVLFIERTRIIRAGDP--IDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 315 ~~~~~~~ge~I~~eGd~--~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
....+.||...-..... .+++++|++|++++.. +|. ...|.+||.+
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~-------~g~------~~~L~~GDsi 111 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL-------EGK------THALSEGGYA 111 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE-------CCE------EEEECCCCEE
Confidence 34567787754333332 4689999999999987 332 3678888865
No 65
>PRK11171 hypothetical protein; Provisional
Probab=37.96 E-value=80 Score=30.70 Aligned_cols=49 Identities=22% Similarity=0.222 Sum_probs=37.7
Q ss_pred ccEeEEecCCCeeEc-cCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 313 FLKPVLFIERTRIIR-AGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 313 ~l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
.+....+.||..+-. +.....+.++|++|+..+.. +|. ...+.+||..-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~-------~~~------~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL-------NND------WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE-------CCE------EEEeCCCCEEE
Confidence 566678999988876 35666799999999999876 343 36789999753
No 66
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=37.60 E-value=26 Score=27.34 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=29.5
Q ss_pred HHHHHhhcCHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHhccEe
Q 036610 267 INSFLSDLSQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLGYLCEFLKP 316 (447)
Q Consensus 267 e~~il~~Lp~~Lr~ei~~~l~~~~~~L~~vplF~~l~~~~l~~L~~~l~~ 316 (447)
-.++|..||+++|.||...+- -++.++++.++.|...++.
T Consensus 29 AA~VL~~lp~e~r~~v~~Ria----------~~~~v~~~~i~~ie~~L~~ 68 (79)
T PF14841_consen 29 AAEVLSQLPEELRAEVVRRIA----------RLESVSPEVIEEIEEVLEE 68 (79)
T ss_dssp HHHHHHTS-HHHHHHHHHHHH----------TCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHH----------ccCCCCHHHHHHHHHHHHH
Confidence 557999999999999977654 2357788888888766543
No 67
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=36.53 E-value=1.5e+02 Score=28.34 Aligned_cols=34 Identities=9% Similarity=0.112 Sum_probs=25.1
Q ss_pred cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEE
Q 036610 314 LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYA 347 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~ 347 (447)
++.....+||..-.+-...+...+++.|++.+..
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~ 64 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSA 64 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEee
Confidence 4455678898776665556667778899999887
No 68
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=32.62 E-value=43 Score=28.62 Aligned_cols=53 Identities=8% Similarity=0.103 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 163 LKKLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 163 ~~~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
......+++.++.+++. +.+...+.+...+++.++.++++.++.+..-|++.+
T Consensus 42 ~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s 94 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTS 94 (148)
T ss_dssp HHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888777776 333456666789999999999999999988899887
No 69
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.85 E-value=7.5e+02 Score=29.10 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcchh
Q 036610 41 LQYLLRVIRTYFVFTEAIEGSGV 63 (447)
Q Consensus 41 ~~~l~Rl~r~~~l~~~~~~~~~~ 63 (447)
+.|.+|++|.+|.+|.+.+..|+
T Consensus 1224 VlrvLRlLRtlRpLRviSra~gl 1246 (1956)
T KOG2302|consen 1224 VLRVLRLLRTLRPLRVISRAPGL 1246 (1956)
T ss_pred HHHHHHHHHHhhHHHHHhhcccH
Confidence 44778888888888888776653
No 70
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=31.19 E-value=59 Score=28.94 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=21.6
Q ss_pred cCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 332 IDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 332 ~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
-|++.+|++|++++.. +|+ ..+.++||.+
T Consensus 95 YDEi~~VlEG~L~i~~-------~G~------~~~A~~GDvi 123 (152)
T PF06249_consen 95 YDEIKYVLEGTLEISI-------DGQ------TVTAKPGDVI 123 (152)
T ss_dssp SEEEEEEEEEEEEEEE-------TTE------EEEEETT-EE
T ss_pred cceEEEEEEeEEEEEE-------CCE------EEEEcCCcEE
Confidence 4889999999999886 453 3677888864
No 71
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=31.05 E-value=72 Score=28.92 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=28.6
Q ss_pred EecCCCeeEc-cCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 318 LFIERTRIIR-AGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 318 ~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
.+.||...-. --..++++++|++|.+++.. +|. ...+++||.+
T Consensus 113 ~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~-------~~~------~~~l~~Gd~~ 156 (185)
T PRK09943 113 TYQPGTTTGERIKHQGEEIGTVLEGEIVLTI-------NGQ------DYHLVAGQSY 156 (185)
T ss_pred EccCCCCcccccccCCcEEEEEEEeEEEEEE-------CCE------EEEecCCCEE
Confidence 4566653221 11345799999999999887 332 3679999965
No 72
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=29.40 E-value=2.9e+02 Score=31.30 Aligned_cols=50 Identities=26% Similarity=0.430 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhcccCCCccCC-C----ChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 167 LHCLHWGLQKLSAFGQDLETS-D----DVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 167 ~~slYwa~~tltTvG~g~~~~-~----~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
..+++|++-+++-++-.+++. . ++++.+|.+-.++.=+++--++|.-|++
T Consensus 555 ~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnn 609 (822)
T KOG3609|consen 555 SKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSN 609 (822)
T ss_pred HHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHh
Confidence 468999998887766433332 2 3344555544333334444556666655
No 73
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=29.16 E-value=73 Score=25.37 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=19.6
Q ss_pred eEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 334 EMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 334 ~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
-.++|++|.|++.. .+ . .-.+.+|+.|=
T Consensus 35 ~vF~V~~G~v~Vti------~~-~------~f~v~~G~~F~ 62 (85)
T PF11699_consen 35 MVFYVIKGKVEVTI------HE-T------SFVVTKGGSFQ 62 (85)
T ss_dssp EEEEEEESEEEEEE------TT-E------EEEEETT-EEE
T ss_pred EEEEEEeCEEEEEE------cC-c------EEEEeCCCEEE
Confidence 47889999999998 22 1 25678888763
No 74
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=28.68 E-value=81 Score=20.76 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh
Q 036610 421 NQAALFLQSYWRFREFLRERRLS 443 (447)
Q Consensus 421 ~~~~~~~q~~~~~~~~~~~~~~~ 443 (447)
-+|+.+|+..||+.+ +||+.
T Consensus 9 ~YAt~lI~dyfr~~K---~rk~~ 28 (35)
T PF08763_consen 9 FYATLLIQDYFRQFK---KRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHH
Confidence 468899999999998 55543
No 75
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=27.46 E-value=83 Score=30.50 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=29.4
Q ss_pred EEecCCCeeEc-cCCCc-CeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 317 VLFIERTRIIR-AGDPI-DEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 317 ~~~~~ge~I~~-eGd~~-~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
..+.||.-.-. ..+.+ +++.+|++|++++.. +|. ...|++||++=
T Consensus 63 v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~-------~g~------~~~L~~Gd~~y 109 (260)
T TIGR03214 63 VEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA-------EGE------THELREGGYAY 109 (260)
T ss_pred EEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE-------CCE------EEEECCCCEEE
Confidence 45567543211 12333 689999999999887 332 36889998763
No 76
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=27.02 E-value=86 Score=29.90 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=23.3
Q ss_pred cCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 332 IDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 332 ~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
-+++.+|++|++++.. +|. ...+++||++
T Consensus 175 ~dEi~YVLEGe~~l~I-------dG~------t~~l~pGDvl 203 (233)
T PRK15457 175 YDEIDMVLEGELHVRH-------EGE------TMIAKAGDVM 203 (233)
T ss_pred ceEEEEEEEeEEEEEE-------CCE------EEEeCCCcEE
Confidence 4689999999999987 443 3788999865
No 77
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=26.94 E-value=1.6e+02 Score=30.08 Aligned_cols=52 Identities=13% Similarity=0.026 Sum_probs=33.8
Q ss_pred cEeEEecCCCeeEc-cCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 314 LKPVLFIERTRIIR-AGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 314 l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
+......||...-. --...+++++|++|++++... +.+|+. ....+++||.+
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~----d~~g~~----~~~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVF----AAGGNA----RTFDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEE----ecCCcE----EEEEECCCCEE
Confidence 44566778876542 223368999999999998862 122322 24678999954
No 78
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=26.86 E-value=2.5e+02 Score=25.94 Aligned_cols=50 Identities=18% Similarity=0.128 Sum_probs=32.0
Q ss_pred eEEecCCCee---------EccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 316 PVLFIERTRI---------IRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 316 ~~~~~~ge~I---------~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
...+.||... +++.....++|+|++|+..+... ..+|.. ....+.+||.+
T Consensus 72 ~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~----~~~G~~----~~~~v~pGd~v 130 (191)
T PRK04190 72 TTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQ----DPEGEA----RWIEMEPGTVV 130 (191)
T ss_pred EEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEe----cCCCcE----EEEEECCCCEE
Confidence 3556777753 44444456999999999998862 122321 24678888864
No 79
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=26.76 E-value=1.3e+02 Score=23.67 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=41.9
Q ss_pred ccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCC
Q 036610 313 FLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPIS 392 (447)
Q Consensus 313 ~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~ 392 (447)
......+.||..+=.-...+.+..||++|... |+. ..+.+||+.=+. +.+
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~----------d~~-------~~~~~G~~~~~p-------------~g~ 74 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELS----------DGD-------GRYGAGDWLRLP-------------PGS 74 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEE----------ETT-------CEEETTEEEEE--------------TTE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEE----------ECC-------ccCCCCeEEEeC-------------CCC
Confidence 45557788998887767778888899999986 221 235778765432 224
Q ss_pred ccEEEEcceEEEEE
Q 036610 393 NKTIQALTDVEAFT 406 (447)
Q Consensus 393 ~~tv~Alt~~el~~ 406 (447)
..+..+-+.|.++.
T Consensus 75 ~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 75 SHTPRSDEGCLILV 88 (91)
T ss_dssp EEEEEESSCEEEEE
T ss_pred ccccCcCCCEEEEE
Confidence 45677888888775
No 80
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=26.70 E-value=1.3e+02 Score=29.19 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=37.1
Q ss_pred hccEeEEecCCCeeE-ccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 312 EFLKPVLFIERTRII-RAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 312 ~~l~~~~~~~ge~I~-~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
..+....+.||..+- ++-....+.++|++|+..+.. ||. ...+++||++
T Consensus 179 ~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~-------~g~------~~~V~~GD~i 228 (260)
T TIGR03214 179 MNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL-------DNN------WVPVEAGDYI 228 (260)
T ss_pred cEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE-------CCE------EEEecCCCEE
Confidence 455668899999995 566666789999999998765 443 3678889974
No 81
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=26.67 E-value=2.3e+02 Score=26.85 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=35.7
Q ss_pred CCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEEE--EcceEEEEE
Q 036610 329 GDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQ--ALTDVEAFT 406 (447)
Q Consensus 329 Gd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~--Alt~~el~~ 406 (447)
++.++.+.||++|++.+.. +|+ ...|.+|++.= ++ |.+..+++ +.+++.++.
T Consensus 80 d~~ae~~lfVv~Ge~tv~~-------~G~------th~l~eggyay-------lP------pgs~~~~~N~~~~~~rfhw 133 (264)
T COG3257 80 DEGAETFLFVVSGEITVKA-------EGK------THALREGGYAY-------LP------PGSGWTLRNAQKEDSRFHW 133 (264)
T ss_pred CCcceEEEEEEeeeEEEEE-------cCe------EEEeccCCeEE-------eC------CCCcceEeeccCCceEEEE
Confidence 3456789999999999887 343 37888888631 11 12233444 667777776
Q ss_pred EcH
Q 036610 407 LIA 409 (447)
Q Consensus 407 L~~ 409 (447)
+.+
T Consensus 134 ~rk 136 (264)
T COG3257 134 IRK 136 (264)
T ss_pred Eee
Confidence 654
No 82
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=25.40 E-value=1.7e+02 Score=29.52 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=52.0
Q ss_pred EEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEE
Q 036610 317 VLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTI 396 (447)
Q Consensus 317 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv 396 (447)
+...+|..--..-+....+|+|++|+-.+.. +|+ ....++||+|---+. ...+-
T Consensus 255 q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~i-------g~~------~~~W~~gD~f~vPsW-------------~~~~h 308 (335)
T TIGR02272 255 QLLPKGFRTATYRSTDATVFCVVEGRGQVRI-------GDA------VFRFSPKDVFVVPSW-------------HPVRF 308 (335)
T ss_pred hccCCCCCCCCccccccEEEEEEeCeEEEEE-------CCE------EEEecCCCEEEECCC-------------CcEec
Confidence 5567777666666677899999999988777 332 257899999865321 01233
Q ss_pred EEcceEEEEEEcHhhHHHHHh
Q 036610 397 QALTDVEAFTLIADDLKHVLS 417 (447)
Q Consensus 397 ~Alt~~el~~L~~~dl~~ll~ 417 (447)
.|.+++.+|.++-..+.+-+.
T Consensus 309 ~a~~da~Lf~~~D~Pll~~LG 329 (335)
T TIGR02272 309 EASDDAVLFSFSDRPVQQKLG 329 (335)
T ss_pred ccCCCeEEEEecCHHHHHHhc
Confidence 445677789888887777665
No 83
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=25.24 E-value=1.8e+02 Score=29.70 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=31.9
Q ss_pred eEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 316 PVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 316 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
...+.||...----....++.+|++|++++... ..+++. ....+++||.+=
T Consensus 71 ~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~-----d~~g~~---~~~~L~~GD~~~ 121 (367)
T TIGR03404 71 NMRLEPGAIRELHWHKEAEWAYVLYGSCRITAV-----DENGRN---YIDDVGAGDLWY 121 (367)
T ss_pred EEEEcCCCCCCcccCCCceEEEEEeeEEEEEEE-----cCCCcE---EEeEECCCCEEE
Confidence 345677775432222456899999999999882 112221 124699999763
No 84
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=24.38 E-value=95 Score=22.28 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=19.8
Q ss_pred HHHHhccccccccCCC-------HhHHHHHHHHHHHHHHhhhccccchhHHHHHhh
Q 036610 225 NPRWQGLKQSKHYAVI-------SGDRKVLRKFKKAKRENLVNKHVDVHINSFLSD 273 (447)
Q Consensus 225 v~~~m~~~~~~~~~lp-------~~L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~ 273 (447)
+..|. +++++| ++|-.-|++||. +..+| |.+++..
T Consensus 6 LrrY~-----~~~~l~~~~~~sK~qLa~~V~kHF~-------s~~v~--E~evI~~ 47 (53)
T PF13867_consen 6 LRRYK-----KHYKLPERPRSSKEQLANAVRKHFN-------SQPVD--ENEVIAN 47 (53)
T ss_dssp HHHHH-----HHTT----SS--HHHHHHHHHHHHT-------T------HHHHHHH
T ss_pred HHHHH-----HHhCCCCCCCCCHHHHHHHHHHHHh-------cCCCC--HHHHHHH
Confidence 45666 655555 677788888876 56678 8877643
No 85
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=23.71 E-value=71 Score=24.04 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=21.0
Q ss_pred cccCCCHhHHHHHHHHHHHHHHh
Q 036610 235 KHYAVISGDRKVLRKFKKAKREN 257 (447)
Q Consensus 235 ~~~~lp~~L~~rv~~y~~~~w~~ 257 (447)
+-+++|+++++.|.+|.+|...+
T Consensus 8 ~i~~LP~~~~~Evldfi~fL~~k 30 (66)
T PF10047_consen 8 KIQQLPEELQQEVLDFIEFLLQK 30 (66)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHh
Confidence 55789999999999999999988
No 86
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=23.03 E-value=3.9e+02 Score=21.26 Aligned_cols=56 Identities=9% Similarity=0.014 Sum_probs=37.2
Q ss_pred HHHHhccccccc-cCCCHhHHHHHHHHHHHHHHhhhccccchhHHHHHhhcCHHHHHHHHHHHc
Q 036610 225 NPRWQGLKQSKH-YAVISGDRKVLRKFKKAKRENLVNKHVDVHINSFLSDLSQDAANEVKRLIG 287 (447)
Q Consensus 225 v~~~m~~~~~~~-~~lp~~L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~Lp~~Lr~ei~~~l~ 287 (447)
++++| .. .+++++-++++++.++..-.. ....+.-...+-..++++.|..+...+.
T Consensus 24 i~~~l-----~~~~~l~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~r~~~l~~L~ 80 (104)
T cd07313 24 IDRLL-----AERFGLDAEEAAELLAEAEALEEE--APDLYEFTSLIKEHFDYEERLELVEALW 80 (104)
T ss_pred HHHHH-----HHHhCcCHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66676 55 489999999999988765544 3333211334445677888888877664
No 87
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=22.29 E-value=1.5e+02 Score=24.06 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=20.7
Q ss_pred cCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 328 AGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 328 eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
.....-++.+|.+|...+.. +|+ ...++|||+|
T Consensus 19 h~h~~~~i~~v~~G~~~~~~-------~~~------~~~l~~g~~~ 51 (136)
T PF02311_consen 19 HWHDFYEIIYVLSGEGTLHI-------DGQ------EYPLKPGDLF 51 (136)
T ss_dssp ETT-SEEEEEEEEE-EEEEE-------TTE------EEEE-TT-EE
T ss_pred EECCCEEEEEEeCCEEEEEE-------CCE------EEEEECCEEE
Confidence 33445578999999999876 443 3678888876
No 88
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.67 E-value=2.5e+02 Score=31.56 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=40.3
Q ss_pred cccCCCccCCCCh------hhHHHHHHHHHHHHHHHHHHHHHhhH--HHH-HHH-hh-HHHHhccccccccCCCHhHHHH
Q 036610 178 SAFGQDLETSDDV------GENIFAIWMTIYGVVLFVFLIGRMQI--ETA-RSQ-KI-NPRWQGLKQSKHYAVISGDRKV 246 (447)
Q Consensus 178 tTvG~g~~~~~~~------~E~~f~i~~mi~G~~~fa~iiG~v~~--~~~-~~k-~~-v~~~m~~~~~~~~~lp~~L~~r 246 (447)
.|+|+||.+..+. .-.+|.+++.++-+++.-++|.-|++ ++. +.+ +. -.||....-.-.+.+|+.++.|
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~iL~lErs~p~~~r~~ 680 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAATILMLERSLPPALRKR 680 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5889887665432 34556666777788888888888877 111 111 00 1122200001568899999887
Q ss_pred H
Q 036610 247 L 247 (447)
Q Consensus 247 v 247 (447)
=
T Consensus 681 ~ 681 (782)
T KOG3676|consen 681 F 681 (782)
T ss_pred H
Confidence 3
No 89
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=21.03 E-value=1.3e+02 Score=30.54 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=35.0
Q ss_pred EEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeech
Q 036610 317 VLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGK 375 (447)
Q Consensus 317 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE 375 (447)
+...||+.--.--.....++||++|.=..+. .||.+ ..+++||+|=-
T Consensus 86 q~l~pGe~~~~HRht~sAl~~vveG~G~~t~------V~g~~------~~~~~gD~~~t 132 (335)
T TIGR02272 86 QLILPGEVAPSHRHTQSALRFIVEGKGAFTA------VDGER------TTMHPGDFIIT 132 (335)
T ss_pred EEeCCCCCCCccccccceEEEEEEcCceEEE------ECCEE------EeeeCCCEEEe
Confidence 6788898877777778899999999965333 35543 67888888754
No 90
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=20.80 E-value=2e+02 Score=30.35 Aligned_cols=48 Identities=10% Similarity=0.034 Sum_probs=32.3
Q ss_pred cEeEEecCCCeeE-ccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 314 LKPVLFIERTRII-RAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 314 l~~~~~~~ge~I~-~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
+....+.||..+= +.....++.++|++|++++.. +|. ...+++||.+-
T Consensus 378 ~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~-------dg~------~~~l~~GDsi~ 426 (468)
T TIGR01479 378 VKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI-------GDE------TLLLTENESTY 426 (468)
T ss_pred EEEEEECCCCccCccccCCCceEEEEEeeEEEEEE-------CCE------EEEecCCCEEE
Confidence 3445678887542 223335677899999999987 343 36789998754
No 91
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.51 E-value=53 Score=24.06 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhcccCC
Q 036610 165 KLLHCLHWGLQKLSAFGQ 182 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~ 182 (447)
||+.+++|++--.--+||
T Consensus 2 kyivt~fWs~il~~vvgy 19 (57)
T PF11151_consen 2 KYIVTFFWSFILGEVVGY 19 (57)
T ss_pred cEEehhHHHHHHHHHHHH
Confidence 788999999876555665
Done!