Query 036610
Match_columns 447
No_of_seqs 335 out of 1920
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 05:38:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ptm_A Hyperpolarization-activ 100.0 7.9E-32 2.7E-36 248.5 19.0 178 212-420 1-182 (198)
2 3bpz_A Potassium/sodium hyperp 100.0 1.4E-31 4.7E-36 247.9 19.6 187 217-436 9-197 (202)
3 3ukn_A Novel protein similar t 100.0 9.2E-32 3.1E-36 250.8 17.4 193 209-433 2-199 (212)
4 3beh_A MLL3241 protein; transm 100.0 6.7E-32 2.3E-36 272.0 5.3 177 163-420 159-336 (355)
5 4f8a_A Potassium voltage-gated 99.8 1.7E-20 5.9E-25 165.4 13.7 134 267-420 5-139 (160)
6 3mdp_A Cyclic nucleotide-bindi 99.8 1.3E-17 4.5E-22 143.7 14.8 128 288-433 5-136 (142)
7 3ocp_A PRKG1 protein; serine/t 99.8 1.7E-18 5.7E-23 149.6 9.1 126 273-420 7-133 (139)
8 2pqq_A Putative transcriptiona 99.7 3.3E-17 1.1E-21 142.1 15.6 130 288-435 4-134 (149)
9 1wgp_A Probable cyclic nucleot 99.7 1.6E-17 5.6E-22 142.7 10.5 125 288-420 5-131 (137)
10 2z69_A DNR protein; beta barre 99.7 7.2E-17 2.5E-21 140.9 13.9 127 293-434 14-141 (154)
11 3gyd_A CNMP-BD protein, cyclic 99.7 9.2E-17 3.2E-21 146.5 14.9 117 287-420 37-154 (187)
12 3idb_B CAMP-dependent protein 99.7 4.9E-17 1.7E-21 144.0 11.8 116 287-420 36-152 (161)
13 4ev0_A Transcription regulator 99.7 3E-16 1E-20 145.1 16.2 113 293-420 1-114 (216)
14 3dn7_A Cyclic nucleotide bindi 99.7 1.6E-16 5.5E-21 144.8 13.5 113 293-420 9-123 (194)
15 1vp6_A CNBD, cyclic-nucleotide 99.7 2.1E-16 7.1E-21 135.7 12.7 116 293-431 13-129 (138)
16 1zyb_A Transcription regulator 99.7 8.2E-16 2.8E-20 144.5 17.5 128 293-435 20-150 (232)
17 3iwz_A CAP-like, catabolite ac 99.7 1.3E-15 4.4E-20 142.2 17.3 126 293-433 13-144 (230)
18 3e97_A Transcriptional regulat 99.7 5.3E-16 1.8E-20 145.2 14.3 113 293-420 8-121 (231)
19 3d0s_A Transcriptional regulat 99.7 4.3E-16 1.5E-20 145.5 13.5 113 293-420 8-121 (227)
20 3dv8_A Transcriptional regulat 99.7 1.5E-15 5E-20 140.9 17.0 113 293-420 5-120 (220)
21 3shr_A CGMP-dependent protein 99.7 2.3E-16 7.9E-21 153.8 12.0 128 271-420 21-149 (299)
22 3fx3_A Cyclic nucleotide-bindi 99.7 5.5E-16 1.9E-20 145.7 13.9 127 293-435 13-140 (237)
23 2d93_A RAP guanine nucleotide 99.7 3.7E-17 1.3E-21 140.3 4.9 107 293-419 18-127 (134)
24 3dkw_A DNR protein; CRP-FNR, H 99.7 5.9E-16 2E-20 144.2 12.4 114 293-420 11-125 (227)
25 3pna_A CAMP-dependent protein 99.6 4.1E-16 1.4E-20 137.1 10.3 110 289-420 38-148 (154)
26 2gau_A Transcriptional regulat 99.6 2.1E-15 7.1E-20 141.3 14.5 113 293-420 12-125 (232)
27 3shr_A CGMP-dependent protein 99.6 1.4E-15 4.9E-20 148.1 12.6 135 288-440 156-292 (299)
28 4ava_A Lysine acetyltransferas 99.6 4.3E-15 1.5E-19 147.1 13.5 124 293-433 15-138 (333)
29 3ryp_A Catabolite gene activat 99.6 1.5E-14 5.2E-19 133.0 16.1 110 297-420 2-112 (210)
30 2fmy_A COOA, carbon monoxide o 99.6 7.5E-15 2.6E-19 136.5 12.8 105 293-420 6-111 (220)
31 1orq_C Potassium channel; volt 99.6 5.5E-16 1.9E-20 145.6 5.1 52 165-216 165-216 (223)
32 3of1_A CAMP-dependent protein 99.6 5.2E-15 1.8E-19 139.2 11.7 113 287-420 123-236 (246)
33 3of1_A CAMP-dependent protein 99.6 3.9E-15 1.3E-19 140.1 10.6 108 293-420 9-117 (246)
34 2oz6_A Virulence factor regula 99.6 4.8E-14 1.6E-18 129.3 16.8 105 302-420 1-109 (207)
35 2qcs_B CAMP-dependent protein 99.6 2.4E-14 8.1E-19 138.7 14.7 114 293-420 159-273 (291)
36 2qcs_B CAMP-dependent protein 99.6 2.4E-14 8.2E-19 138.6 13.1 111 288-420 38-149 (291)
37 3kcc_A Catabolite gene activat 99.5 7.9E-14 2.7E-18 133.5 15.9 109 298-420 53-162 (260)
38 3tnp_B CAMP-dependent protein 99.5 2.2E-14 7.5E-19 147.1 12.5 115 288-420 144-259 (416)
39 1o5l_A Transcriptional regulat 99.5 5E-14 1.7E-18 130.5 13.7 112 295-420 3-115 (213)
40 1ft9_A Carbon monoxide oxidati 99.5 2.3E-14 7.7E-19 133.5 10.0 105 293-420 2-107 (222)
41 1o7f_A CAMP-dependent RAP1 gua 99.5 3.6E-14 1.2E-18 147.0 11.5 131 274-420 27-158 (469)
42 3e6c_C CPRK, cyclic nucleotide 99.5 1.2E-13 4.2E-18 131.0 14.3 123 293-434 11-134 (250)
43 3tnp_B CAMP-dependent protein 99.5 8.1E-14 2.8E-18 142.9 13.6 118 286-420 264-388 (416)
44 4din_B CAMP-dependent protein 99.5 3.9E-14 1.3E-18 143.6 10.5 118 287-420 246-364 (381)
45 4din_B CAMP-dependent protein 99.5 5.4E-14 1.9E-18 142.5 11.4 110 289-420 130-240 (381)
46 2a9h_A Voltage-gated potassium 99.5 7.3E-14 2.5E-18 123.7 9.8 52 165-216 84-135 (155)
47 1o7f_A CAMP-dependent RAP1 gua 99.5 1.7E-13 5.8E-18 141.9 11.6 112 288-420 336-450 (469)
48 2r9r_B Paddle chimera voltage 99.5 1.3E-14 4.4E-19 152.5 2.7 109 165-290 375-492 (514)
49 4f7z_A RAP guanine nucleotide 99.4 4E-13 1.4E-17 152.1 14.5 115 293-421 44-159 (999)
50 4h33_A LMO2059 protein; bilaye 99.4 7.1E-13 2.4E-17 115.0 10.1 51 166-216 44-94 (137)
51 3la7_A Global nitrogen regulat 99.4 3.4E-12 1.2E-16 120.6 15.4 103 304-420 30-137 (243)
52 3vou_A ION transport 2 domain 99.4 3.9E-12 1.3E-16 111.9 13.8 76 166-246 53-148 (148)
53 2ih3_C Voltage-gated potassium 99.4 1.2E-12 4.1E-17 111.3 10.1 52 165-216 61-112 (122)
54 2bgc_A PRFA; bacterial infecti 99.4 4.3E-12 1.5E-16 119.4 14.7 106 300-420 2-112 (238)
55 4f7z_A RAP guanine nucleotide 99.4 1.9E-12 6.5E-17 146.6 13.8 106 293-417 339-446 (999)
56 3cf6_E RAP guanine nucleotide 99.4 1E-12 3.5E-17 142.8 10.5 131 268-420 12-145 (694)
57 3b02_A Transcriptional regulat 99.3 3.4E-11 1.2E-15 109.7 12.3 81 317-413 2-82 (195)
58 2zcw_A TTHA1359, transcription 99.1 1.1E-10 3.8E-15 106.7 9.5 86 311-413 2-89 (202)
59 3eff_K Voltage-gated potassium 99.1 2.5E-10 8.7E-15 99.1 8.3 52 165-216 40-91 (139)
60 2q67_A Potassium channel prote 99.0 2.7E-09 9.1E-14 89.4 12.3 51 166-216 50-100 (114)
61 3ldc_A Calcium-gated potassium 99.0 1.3E-09 4.4E-14 85.8 7.2 51 166-216 29-79 (82)
62 3ouf_A Potassium channel prote 98.9 2E-09 6.8E-14 87.5 8.3 51 166-216 33-83 (97)
63 2k1e_A Water soluble analogue 98.9 3.1E-10 1.1E-14 93.4 1.7 52 165-216 40-91 (103)
64 3pjs_K KCSA, voltage-gated pot 98.8 8.6E-10 2.9E-14 98.7 0.5 52 165-216 67-118 (166)
65 1xl4_A Inward rectifier potass 98.7 3E-08 1E-12 96.9 9.3 52 165-216 82-133 (301)
66 3um7_A Potassium channel subfa 98.7 4.8E-08 1.6E-12 95.3 9.9 52 165-216 115-166 (309)
67 1p7b_A Integral membrane chann 98.7 1.9E-08 6.4E-13 99.5 6.3 51 166-216 97-147 (333)
68 2qks_A KIR3.1-prokaryotic KIR 98.5 1.1E-07 3.9E-12 93.5 7.2 52 165-216 78-129 (321)
69 3ukm_A Potassium channel subfa 98.3 6.8E-07 2.3E-11 85.9 7.2 52 165-216 93-144 (280)
70 4gx0_A TRKA domain protein; me 98.3 1.7E-06 5.8E-11 91.7 10.2 48 166-213 52-99 (565)
71 3sya_A G protein-activated inw 98.3 4.7E-06 1.6E-10 82.2 11.7 51 166-216 92-144 (340)
72 3ukm_A Potassium channel subfa 98.1 3.3E-06 1.1E-10 81.2 7.2 52 165-216 201-259 (280)
73 3um7_A Potassium channel subfa 98.1 1.9E-06 6.5E-11 84.0 5.6 52 165-216 224-281 (309)
74 1lnq_A MTHK channels, potassiu 98.1 3.5E-07 1.2E-11 90.6 -0.9 51 166-216 46-96 (336)
75 3spc_A Inward-rectifier K+ cha 98.0 1.3E-05 4.3E-10 79.3 9.3 52 165-216 94-147 (343)
76 3rvy_A ION transport protein; 98.0 3.6E-06 1.2E-10 81.4 3.7 54 163-216 178-237 (285)
77 4dxw_A Navrh, ION transport pr 93.2 0.076 2.6E-06 48.9 4.7 50 166-215 166-220 (229)
78 3rns_A Cupin 2 conserved barre 79.2 9 0.00031 34.8 9.4 69 314-408 39-107 (227)
79 3fjs_A Uncharacterized protein 78.6 9.5 0.00033 30.4 8.4 67 314-406 38-104 (114)
80 2l53_B CAM, voltage-gated sodi 76.9 3 0.0001 25.8 3.5 20 419-438 4-23 (31)
81 2ozj_A Cupin 2, conserved barr 75.9 15 0.0005 28.9 8.8 65 317-407 43-107 (114)
82 3lwc_A Uncharacterized protein 74.6 6.6 0.00022 31.9 6.4 44 317-374 45-88 (119)
83 1o5u_A Novel thermotoga mariti 73.5 8.9 0.00031 30.2 6.7 46 315-374 34-79 (101)
84 1yhf_A Hypothetical protein SP 72.3 21 0.00072 27.8 8.8 67 315-407 43-109 (115)
85 2kxw_B Sodium channel protein 71.1 4.1 0.00014 24.3 3.0 17 420-436 5-21 (27)
86 3bcw_A Uncharacterized protein 69.7 3.3 0.00011 34.1 3.4 44 318-374 55-98 (123)
87 3es4_A Uncharacterized protein 69.6 5 0.00017 32.8 4.4 44 318-374 48-91 (116)
88 3h8u_A Uncharacterized conserv 67.6 8.5 0.00029 30.8 5.5 48 314-373 41-89 (125)
89 2gu9_A Tetracenomycin polyketi 66.1 9.9 0.00034 29.4 5.5 47 314-373 23-72 (113)
90 2pfw_A Cupin 2, conserved barr 66.1 26 0.00089 27.3 8.2 68 314-407 36-103 (116)
91 1v70_A Probable antibiotics sy 64.8 12 0.00042 28.2 5.8 46 315-373 31-77 (105)
92 4e2g_A Cupin 2 conserved barre 64.8 10 0.00036 30.3 5.6 47 314-373 43-89 (126)
93 2fqp_A Hypothetical protein BP 63.6 5.3 0.00018 30.8 3.3 49 315-374 21-70 (97)
94 3es1_A Cupin 2, conserved barr 59.8 11 0.00036 33.0 4.9 48 314-373 81-128 (172)
95 1yfu_A 3-hydroxyanthranilate-3 58.7 12 0.0004 32.8 4.9 41 324-374 48-88 (174)
96 3ibm_A Cupin 2, conserved barr 58.2 17 0.00058 31.2 6.0 47 314-373 58-104 (167)
97 1zvf_A 3-hydroxyanthranilate 3 56.0 9 0.00031 33.6 3.7 68 324-411 47-115 (176)
98 2pyt_A Ethanolamine utilizatio 55.9 10 0.00036 31.4 4.0 43 317-374 62-104 (133)
99 2i45_A Hypothetical protein; n 55.9 13 0.00045 28.8 4.5 69 319-412 35-103 (107)
100 2b8m_A Hypothetical protein MJ 55.9 19 0.00064 28.4 5.5 44 317-373 32-76 (117)
101 3l2h_A Putative sugar phosphat 54.5 13 0.00045 31.4 4.6 46 315-373 49-96 (162)
102 3i7d_A Sugar phosphate isomera 54.1 14 0.00047 31.6 4.6 47 315-374 46-94 (163)
103 2bnm_A Epoxidase; oxidoreducta 53.5 24 0.00081 30.7 6.3 49 317-374 122-173 (198)
104 3rns_A Cupin 2 conserved barre 53.1 20 0.00069 32.3 5.8 68 314-407 155-223 (227)
105 1dgw_A Canavalin; duplicated s 52.8 11 0.00039 32.7 4.0 52 314-374 43-94 (178)
106 4b29_A Dimethylsulfoniopropion 52.0 24 0.00082 32.0 6.0 46 317-374 137-182 (217)
107 2vpv_A Protein MIF2, MIF2P; nu 51.3 11 0.00039 32.7 3.6 32 330-374 108-139 (166)
108 3d82_A Cupin 2, conserved barr 51.0 31 0.001 26.0 5.9 58 326-409 44-101 (102)
109 2opk_A Hypothetical protein; p 50.2 23 0.00079 28.0 5.1 45 319-374 37-84 (112)
110 3kgz_A Cupin 2 conserved barre 50.0 15 0.00051 31.3 4.2 44 317-373 49-92 (156)
111 1sfn_A Conserved hypothetical 49.6 24 0.00081 32.4 5.8 49 313-374 166-215 (246)
112 3bu7_A Gentisate 1,2-dioxygena 48.8 11 0.00039 37.4 3.6 48 315-374 126-173 (394)
113 1o4t_A Putative oxalate decarb 48.6 23 0.00077 28.9 5.0 45 316-373 61-106 (133)
114 2q30_A Uncharacterized protein 48.5 31 0.001 26.4 5.6 46 316-373 37-84 (110)
115 3jzv_A Uncharacterized protein 48.0 15 0.00052 31.7 3.9 45 316-373 57-101 (166)
116 4i4a_A Similar to unknown prot 47.6 26 0.00088 27.9 5.1 46 316-374 38-83 (128)
117 1vj2_A Novel manganese-contain 47.5 20 0.00068 28.8 4.4 44 317-373 53-96 (126)
118 4axo_A EUTQ, ethanolamine util 47.5 16 0.00055 31.2 3.9 30 331-373 83-112 (151)
119 3cew_A Uncharacterized cupin p 46.8 24 0.0008 28.2 4.7 46 315-373 29-76 (125)
120 1y9q_A Transcriptional regulat 46.2 32 0.0011 29.8 5.9 44 317-373 109-154 (192)
121 3d0j_A Uncharacterized protein 46.0 13 0.00044 31.3 3.0 66 326-410 44-110 (140)
122 2f4p_A Hypothetical protein TM 43.0 48 0.0016 27.5 6.3 48 315-374 51-98 (147)
123 3bu7_A Gentisate 1,2-dioxygena 43.0 21 0.00072 35.5 4.5 77 315-417 297-376 (394)
124 4e2q_A Ureidoglycine aminohydr 42.8 23 0.00077 33.2 4.5 47 316-374 74-120 (266)
125 1sfn_A Conserved hypothetical 42.7 39 0.0013 30.9 6.1 44 316-374 54-97 (246)
126 3h7j_A Bacilysin biosynthesis 42.6 31 0.0011 31.4 5.4 46 314-372 36-81 (243)
127 1sef_A Conserved hypothetical 41.2 38 0.0013 31.4 5.9 47 314-373 184-231 (274)
128 3lag_A Uncharacterized protein 40.9 10 0.00035 29.5 1.5 50 314-373 19-69 (98)
129 1sq4_A GLXB, glyoxylate-induce 40.6 35 0.0012 31.9 5.5 50 312-374 191-241 (278)
130 2qnk_A 3-hydroxyanthranilate 3 39.7 26 0.00088 33.1 4.2 70 319-412 36-109 (286)
131 3myx_A Uncharacterized protein 38.5 29 0.00098 32.0 4.4 31 332-374 186-216 (238)
132 1fi2_A Oxalate oxidase, germin 37.9 60 0.002 28.5 6.4 52 314-374 74-130 (201)
133 1lr5_A Auxin binding protein 1 37.5 37 0.0013 28.5 4.8 54 315-374 44-99 (163)
134 2kyh_A KVAP, voltage-gated pot 37.4 4.9 0.00017 34.2 -1.0 11 9-19 87-97 (147)
135 3nw4_A Gentisate 1,2-dioxygena 35.9 23 0.0008 34.8 3.5 49 314-374 105-153 (368)
136 1y3t_A Hypothetical protein YX 34.6 49 0.0017 31.2 5.6 45 316-373 50-95 (337)
137 1rc6_A Hypothetical protein YL 33.8 41 0.0014 30.9 4.7 48 314-374 181-229 (261)
138 1sq4_A GLXB, glyoxylate-induce 33.2 30 0.001 32.3 3.7 46 316-374 72-119 (278)
139 2d40_A Z3393, putative gentisa 33.1 27 0.00093 34.0 3.5 48 315-374 103-150 (354)
140 2vqa_A SLL1358 protein, MNCA; 32.8 67 0.0023 30.8 6.3 51 315-373 55-106 (361)
141 2o8q_A Hypothetical protein; c 32.8 39 0.0013 27.1 4.0 30 332-373 64-93 (134)
142 3nw4_A Gentisate 1,2-dioxygena 32.5 85 0.0029 30.7 6.9 77 315-417 282-358 (368)
143 2o1q_A Putative acetyl/propion 32.3 71 0.0024 26.5 5.6 51 314-375 46-96 (145)
144 3ht1_A REMF protein; cupin fol 32.0 27 0.00091 28.4 2.8 45 318-373 45-89 (145)
145 3h7j_A Bacilysin biosynthesis 31.7 41 0.0014 30.6 4.3 46 316-374 149-195 (243)
146 2kwv_A RAD30 homolog B, DNA po 31.7 17 0.00058 24.4 1.1 22 261-285 14-35 (48)
147 4e2q_A Ureidoglycine aminohydr 31.5 68 0.0023 29.9 5.8 51 311-374 185-236 (266)
148 2oa2_A BH2720 protein; 1017534 31.1 87 0.003 25.7 6.0 51 316-373 47-98 (148)
149 3kg2_A Glutamate receptor 2; I 31.0 47 0.0016 35.6 5.3 51 165-216 563-613 (823)
150 1rc6_A Hypothetical protein YL 30.0 34 0.0012 31.4 3.4 45 317-374 64-110 (261)
151 1uij_A Beta subunit of beta co 29.2 49 0.0017 33.0 4.6 53 312-373 49-101 (416)
152 2ea7_A 7S globulin-1; beta bar 28.9 54 0.0019 32.9 4.9 54 312-374 61-114 (434)
153 2xp1_A SPT6; transcription, IW 28.7 65 0.0022 28.1 4.8 39 293-337 11-49 (178)
154 1juh_A Quercetin 2,3-dioxygena 28.2 62 0.0021 31.2 5.1 69 322-415 262-333 (350)
155 1j58_A YVRK protein; cupin, de 28.2 80 0.0027 30.6 6.0 52 314-373 81-132 (385)
156 1ors_C Potassium channel; volt 27.8 8.2 0.00028 32.0 -1.2 13 7-19 70-82 (132)
157 2cav_A Protein (canavalin); vi 26.8 53 0.0018 33.1 4.4 53 313-374 87-139 (445)
158 2vqa_A SLL1358 protein, MNCA; 25.7 1.1E+02 0.0036 29.3 6.3 53 314-374 236-289 (361)
159 3myx_A Uncharacterized protein 24.9 55 0.0019 30.1 3.8 40 321-374 55-94 (238)
160 3c3v_A Arachin ARAH3 isoform; 24.6 1.1E+02 0.0038 31.3 6.4 60 307-373 367-427 (510)
161 2d5f_A Glycinin A3B4 subunit; 24.4 1.2E+02 0.0043 30.8 6.7 61 307-374 362-423 (493)
162 1sef_A Conserved hypothetical 23.8 50 0.0017 30.6 3.4 45 317-374 67-113 (274)
163 2d40_A Z3393, putative gentisa 23.7 2.1E+02 0.0073 27.5 8.1 76 316-417 272-347 (354)
164 3fz3_A Prunin; TREE NUT allerg 22.9 1.4E+02 0.0049 30.7 6.7 61 306-373 388-449 (531)
165 1j58_A YVRK protein; cupin, de 22.7 92 0.0031 30.2 5.2 53 314-374 259-312 (385)
166 2q1z_B Anti-sigma factor CHRR, 22.6 2.1E+02 0.0072 24.9 7.1 32 313-344 126-157 (195)
167 1fxz_A Glycinin G1; proglycini 21.2 1.3E+02 0.0045 30.5 6.1 55 312-373 338-393 (476)
168 3s7i_A Allergen ARA H 1, clone 20.9 93 0.0032 31.0 4.8 51 314-373 46-96 (418)
169 1juh_A Quercetin 2,3-dioxygena 20.1 1.3E+02 0.0045 28.9 5.6 46 319-373 55-104 (350)
No 1
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.98 E-value=7.9e-32 Score=248.54 Aligned_cols=178 Identities=17% Similarity=0.222 Sum_probs=160.4
Q ss_pred HHhhH--HHHHHHhh-HHHHhccccccccCCCHhHHHHHHHHHHHHHHhhhccccchhHHHHHhhcCHHHHHHHHHHHcc
Q 036610 212 GRMQI--ETARSQKI-NPRWQGLKQSKHYAVISGDRKVLRKFKKAKRENLVNKHVDVHINSFLSDLSQDAANEVKRLIGR 288 (447)
Q Consensus 212 G~v~~--~~~~~k~~-v~~~m~~~~~~~~~lp~~L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~Lp~~Lr~ei~~~l~~ 288 (447)
||+.+ .+++.+++ +++|| +.++||++|++||++||+|.|+. ++.+ |+++|+.||++||.||..+++.
T Consensus 1 ~~~~~~~~~~~~~~~~i~~~m-----~~~~i~~~l~~rv~~y~~~~~~~---~~~~--e~~il~~l~~~Lr~~i~~~~~~ 70 (198)
T 2ptm_A 1 GAMDSSSRQYREKLKQVEEYM-----QYRKLPSHLRNKILDYYEYRYRG---KMFD--ERHIFREVSESIRQDVANYNCR 70 (198)
T ss_dssp ---CHHHHHHHHHHHHHHHHH-----HHTTCCHHHHHHHHHHHHHHHTT---CCCC--SHHHHHHSCHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHHHHH-----HHcCCCHHHHHHHHHHHHHHHcc---cCCC--HHHHHHHcCHHHHHHHHHHHHH
Confidence 34544 55666666 99999 99999999999999999999975 7888 9999999999999999999999
Q ss_pred CcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecC
Q 036610 289 THLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLE 368 (447)
Q Consensus 289 ~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~ 368 (447)
++ ++++|+|++++++++..++..++++.|.|||+|+++||+++.+|||.+|.|+++. .+|. .+..++
T Consensus 71 ~~--l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~------~~g~-----~~~~l~ 137 (198)
T 2ptm_A 71 DL--VASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM------SDGV-----IATSLS 137 (198)
T ss_dssp HH--HHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC------TTSC-----EEEEEC
T ss_pred HH--HhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe------cCCe-----EEEEec
Confidence 99 9999999999999999999999999999999999999999999999999999997 5664 368999
Q ss_pred CCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 369 DGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 369 ~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+||+|||.++. ...+++++++|.++|+++.|++++|..+++ +|.
T Consensus 138 ~G~~fGe~~~~--------~~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~ 182 (198)
T 2ptm_A 138 DGSYFGEICLL--------TRERRVASVKCETYCTLFSLSVQHFNQVLDEFPA 182 (198)
T ss_dssp TTCEESCHHHH--------HSSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHH
T ss_pred CCCEechHHHc--------CCCccceEEEEeeEEEEEEEeHHHHHHHHHHChH
Confidence 99999998762 123678999999999999999999999999 998
No 2
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.98 E-value=1.4e-31 Score=247.88 Aligned_cols=187 Identities=17% Similarity=0.190 Sum_probs=165.0
Q ss_pred HHHHHHhh-HHHHhccccccccCCCHhHHHHHHHHHHHHHHhhhccccchhHHHHHhhcCHHHHHHHHHHHccCcccccc
Q 036610 217 ETARSQKI-NPRWQGLKQSKHYAVISGDRKVLRKFKKAKRENLVNKHVDVHINSFLSDLSQDAANEVKRLIGRTHLEKMQ 295 (447)
Q Consensus 217 ~~~~~k~~-v~~~m~~~~~~~~~lp~~L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~Lp~~Lr~ei~~~l~~~~~~L~~ 295 (447)
.+++.+++ +++|| +.++||++|+.||++||+|.|+. ++.+ ++++|+.||++||.||..+++.++ +++
T Consensus 9 ~~~~~~~~~i~~~m-----~~~~i~~~l~~rv~~y~~~~~~~---~~~~--e~~il~~l~~~L~~~i~~~~~~~~--l~~ 76 (202)
T 3bpz_A 9 RQYQEKYKQVEQYM-----SFHKLPADFRQKIHDYYEHRYQG---KMFD--EDSILGELNGPLREKIVNFNCRKL--VAS 76 (202)
T ss_dssp HHHHHHHHHHHHHH-----HHTTCCHHHHHHHHHHHHHHHTT---CCCC--HHHHHHHSCHHHHHHHHHHHTHHH--HHT
T ss_pred HHHHHHHHHHHHHH-----HHcCCCHHHHHHHHHHHHHHHhc---cCCC--HHHHHHHcCHHHHHHHHHHHHHHH--Hhc
Confidence 55666666 99999 99999999999999999999975 7888 999999999999999999999999 999
Q ss_pred cccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeech
Q 036610 296 VNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGK 375 (447)
Q Consensus 296 vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE 375 (447)
+|+|++++++++..++..++++.|.|||+|+++||+++.+|||.+|.|+++. .+|.. .++++|++|||
T Consensus 77 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~------~~g~~------~~l~~G~~fGe 144 (202)
T 3bpz_A 77 MPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT------KGNKE------MKLSDGSYFGE 144 (202)
T ss_dssp CHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC------TTSCC------EEEETTCEECH
T ss_pred CCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE------CCCeE------EEEcCCCEecc
Confidence 9999999999999999999999999999999999999999999999999987 56543 57899999999
Q ss_pred hhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHHHHHHHHHHHHHHHHHH
Q 036610 376 ELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRRNQAALFLQSYWRFREF 436 (447)
Q Consensus 376 ~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~~~~~~~q~~~~~~~~ 436 (447)
.++.. ..+++++++|.++|+++.|++++|..+++ +|. ++..+.+.+.++...
T Consensus 145 ~~~~~--------~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~-~~~~~~~~~~~rl~~ 197 (202)
T 3bpz_A 145 ICLLT--------RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM-MRRAFETVAIDRLDR 197 (202)
T ss_dssp HHHHH--------CSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGG-GHHHHHHHHHHHHHH
T ss_pred HHHhc--------CCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHHHHH
Confidence 87621 13678999999999999999999999999 987 344455555555443
No 3
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.98 E-value=9.2e-32 Score=250.77 Aligned_cols=193 Identities=17% Similarity=0.220 Sum_probs=163.5
Q ss_pred HHHHHhhH--HHHHHHhh-HHHHhccccccccCCCHhHHHHHHHHHHHHHHhhhccccchhHHHHHhhcCHHHHHHHHHH
Q 036610 209 FLIGRMQI--ETARSQKI-NPRWQGLKQSKHYAVISGDRKVLRKFKKAKRENLVNKHVDVHINSFLSDLSQDAANEVKRL 285 (447)
Q Consensus 209 ~iiG~v~~--~~~~~k~~-v~~~m~~~~~~~~~lp~~L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~Lp~~Lr~ei~~~ 285 (447)
.||.++.. .+++.+++ +++|| +.++||++|+.||++||+|.|+. +++.| ++++|+.||++||.||..+
T Consensus 2 ~ii~~~~~~~~~~~~~~~~i~~ym-----~~~~i~~~l~~rv~~y~~~~~~~--~~~~~--~~~il~~Lp~~L~~~i~~~ 72 (212)
T 3ukn_A 2 AMDQRMYSRRSLYHTRTKDLKDFI-----RVHRLPKALAQRMLECFQTTWSV--NNGID--VSELLKDFPDELRADIAMH 72 (212)
T ss_dssp ----------CHHHHHHHHHHHHH-----HHTTCCHHHHHHHHHHHHHHCCT--GGGCC--CCCTTTTSCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-----HHcCCCHHHHHHHHHHHHHHHHh--cCCCC--HHHHHHHcCHHHHHHHHHH
Confidence 35566655 55666666 99999 99999999999999999999998 89999 9999999999999999999
Q ss_pred HccCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceee
Q 036610 286 IGRTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSREN 365 (447)
Q Consensus 286 l~~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~ 365 (447)
++..+ + ++|+|+++++++++.++..++++.|.|||+|+++||+++.+|||.+|.|+++. +|. .+.
T Consensus 73 ~~~~l--~-~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-------~~~-----~~~ 137 (212)
T 3ukn_A 73 LNKEL--L-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK-------DNT-----VLA 137 (212)
T ss_dssp CCCGG--G-GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES-------SSC-----EEE
T ss_pred HHHHH--H-hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE-------CCe-----EEE
Confidence 99887 6 89999999999999999999999999999999999999999999999999987 332 368
Q ss_pred ecCCCCeechhhhHhhcccCCCCCC-CCccEEEEcceEEEEEEcHhhHHHHHh-CHHHHHHHHHHHHHHH
Q 036610 366 HLEDGDFFGKELIAWAQDESSSNLP-ISNKTIQALTDVEAFTLIADDLKHVLS-FRRNQAALFLQSYWRF 433 (447)
Q Consensus 366 ~l~~Gd~FGE~~l~~~l~~~~~~~~-~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~~~~~~~q~~~~~ 433 (447)
.+++||+|||.++ + .+.+ ++++|++|+++|+++.|++++|..++. +|. ++..+++.+.++
T Consensus 138 ~l~~G~~fGe~~~---~----~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~-~~~~~~~~l~~~ 199 (212)
T 3ukn_A 138 ILGKGDLIGSDSL---T----KEQVIKTNANVKALTYCDLQYISLKGLREVLRLYPE-YAQKFVSEIQHD 199 (212)
T ss_dssp EECTTCEEECSCC---S----SSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHH
T ss_pred EecCCCCcCcHHh---c----cCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChH-HHHHHHHHHHHh
Confidence 9999999999865 1 1222 788999999999999999999999999 998 344455554444
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.97 E-value=6.7e-32 Score=271.98 Aligned_cols=177 Identities=19% Similarity=0.255 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHhccccccccCCCHh
Q 036610 163 LKKLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQIETARSQKINPRWQGLKQSKHYAVISG 242 (447)
Q Consensus 163 ~~~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~~~~~~k~~v~~~m~~~~~~~~~lp~~ 242 (447)
...|..|+||+++||||+||||+.|.+..|+++++++|++|.+++|+.+|.+.+ .+. +-+ ++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~-~~~------~~~-----~~------ 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILAT-GFY------QEV-----RR------ 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHH-----HH------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHH-----HH------
Confidence 345889999999999999999999999999999999999999999999999876 111 001 00
Q ss_pred HHHHHHHHHHHHHHhhhccccchhHHHHHhhcCHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHhccEeEEecCC
Q 036610 243 DRKVLRKFKKAKRENLVNKHVDVHINSFLSDLSQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIER 322 (447)
Q Consensus 243 L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~Lp~~Lr~ei~~~l~~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~g 322 (447)
+++. + +.+. ++++|+|++++++++++++..++++.|+||
T Consensus 221 -----~~~~---------------~-------------------~~~~--l~~~~lf~~ls~~~l~~l~~~~~~~~~~~g 259 (355)
T 3beh_A 221 -----GDFV---------------R-------------------NWQL--VAAVPLFQKLGPAVLVEIVRALRARTVPAG 259 (355)
T ss_dssp -----HHHH---------------H-------------------HHC---------------------------------
T ss_pred -----Hhhc---------------c-------------------cchh--hhcccccccCCHHHHHHHHHhceEEEECCC
Confidence 0000 0 2356 899999999999999999999999999999
Q ss_pred CeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEEEEcceE
Q 036610 323 TRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDV 402 (447)
Q Consensus 323 e~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~ 402 (447)
|.|++|||+++++|||.+|.+++.. .+ . ..+++||+|||.++. ...+++++++|.++|
T Consensus 260 e~I~~~G~~~~~ly~I~~G~v~v~~------~~--~------~~l~~G~~fGe~~~l--------~~~~~~~~~~A~~~~ 317 (355)
T 3beh_A 260 AVICRIGEPGDRMFFVVEGSVSVAT------PN--P------VELGPGAFFGEMALI--------SGEPRSATVSAATTV 317 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEeCCCcCceEEEEEeeEEEEEE------CC--e------eEECCCCEEeehHHh--------CCCCcceEEEECccE
Confidence 9999999999999999999999998 33 1 468999999998651 223678999999999
Q ss_pred EEEEEcHhhHHHHHh-CHH
Q 036610 403 EAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 403 el~~L~~~dl~~ll~-f~~ 420 (447)
+++.+++++|+++++ +|+
T Consensus 318 ~l~~i~~~~f~~ll~~~p~ 336 (355)
T 3beh_A 318 SLLSLHSADFQMLCSSSPE 336 (355)
T ss_dssp -------------------
T ss_pred EEEEEeHHHHHHHHHHCHH
Confidence 999999999999999 887
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.84 E-value=1.7e-20 Score=165.41 Aligned_cols=134 Identities=22% Similarity=0.280 Sum_probs=112.5
Q ss_pred HHHHHhhcCHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEE
Q 036610 267 INSFLSDLSQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTY 346 (447)
Q Consensus 267 e~~il~~Lp~~Lr~ei~~~l~~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~ 346 (447)
.+++++.||++||.++..+++.++ ++++|+|++++++.++.++..++.+.|.+||+|+++||+++.+|||.+|.|+++
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~--l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~ 82 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKV--FKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVI 82 (160)
T ss_dssp ----------CCHHHHHHHHTHHH--HTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEE
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHH--HHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEE
Confidence 456999999999999999999999 999999999999999999999999999999999999999999999999999998
Q ss_pred EeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 347 ASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 347 ~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
. .+ . .+..+++|++|||..+. .....+++++++|.++|+++.+++++|..+++ +|.
T Consensus 83 ~------~~--~----~~~~~~~G~~fG~~~~~------~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 139 (160)
T 4f8a_A 83 Q------DD--E----VVAILGKGDVFGDVFWK------EATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTA 139 (160)
T ss_dssp E------TT--E----EEEEEETTCEEECCTTT------CSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHH
T ss_pred E------CC--E----EEEEecCCCEeCcHHHh------cCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHH
Confidence 7 22 1 36889999999998651 11114688999999999999999999999999 887
No 6
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.75 E-value=1.3e-17 Score=143.69 Aligned_cols=128 Identities=12% Similarity=0.142 Sum_probs=104.5
Q ss_pred cCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccce---e
Q 036610 288 RTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSR---E 364 (447)
Q Consensus 288 ~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~---~ 364 (447)
.++ ++++|+|++++++.++.++..++.+.|.+||+|+++||+++.+|||.+|.|+++.. ..+|++. . +
T Consensus 5 ~~~--l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~----~~~g~~~---~~~~~ 75 (142)
T 3mdp_A 5 PER--LRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYS----NGGAGSA---ANSTV 75 (142)
T ss_dssp TTG--GGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC----------------CEE
T ss_pred HHH--HhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEE----CCCCCce---EeeeE
Confidence 456 89999999999999999999999999999999999999999999999999999972 2344332 3 5
Q ss_pred eecCCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHHHHHHHHHHHHHHH
Q 036610 365 NHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRRNQAALFLQSYWRF 433 (447)
Q Consensus 365 ~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~~~~~~~q~~~~~ 433 (447)
..+++|++|||.++ + ...+++++++|.++|+++.+++++|..++. +|. ++..+++...+.
T Consensus 76 ~~~~~G~~fG~~~~---~-----~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-~~~~l~~~l~~~ 136 (142)
T 3mdp_A 76 CSVVPGAIFGVSSL---I-----KPYHYTSSARATKPVRVVDINGARLREMSENNQA-LGQVLMNNVAAA 136 (142)
T ss_dssp EEECTTCEECGGGS---S-----TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHH
T ss_pred EEecCCCEechHHH---c-----CCCCceEEEEECCcEEEEEEeHHHHHHHHHHChH-HHHHHHHHHHHH
Confidence 78999999999865 1 234678999999999999999999999999 888 344455555444
No 7
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.75 E-value=1.7e-18 Score=149.57 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=110.5
Q ss_pred hcCHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeeccc
Q 036610 273 DLSQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVT 352 (447)
Q Consensus 273 ~Lp~~Lr~ei~~~l~~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~ 352 (447)
++|..+|.+.......++ ++++|+|++++++.++.++..++.+.|.+|++|+++||+++.+|||.+|.|++..
T Consensus 7 ~~p~~~k~~~~~~~~~~~--l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~----- 79 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEA--ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK----- 79 (139)
T ss_dssp CCCCCCCCHHHHHHHHHH--HHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE-----
T ss_pred cCCCCCCCHHHHHHHHHH--HhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-----
Confidence 578888888888888888 9999999999999999999999999999999999999999999999999999966
Q ss_pred ccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 353 TTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 353 ~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+|. .+..+++|++|||..+. . ..+++++++|+++|+++.+++++|..+++ +|.
T Consensus 80 --~g~-----~~~~~~~G~~fGe~~~l---~-----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 133 (139)
T 3ocp_A 80 --EGV-----KLCTMGPGKVFGELAIL---Y-----NCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGL 133 (139)
T ss_dssp --TTE-----EEEEECTTCEESCHHHH---H-----CCCCSSEEEESSCEEEEEEEHHHHHHHHTC---
T ss_pred --CCE-----EEEEeCCCCEeccHHHH---C-----CCCcceEEEECcceEEEEEcHHHHHHHHhhChH
Confidence 443 36899999999998762 1 13678999999999999999999999999 886
No 8
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.74 E-value=3.3e-17 Score=142.14 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=107.3
Q ss_pred cCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeec
Q 036610 288 RTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHL 367 (447)
Q Consensus 288 ~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l 367 (447)
.++ ++++|+|++++++.++.++..++.+.|.+||+|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+
T Consensus 4 ~~~--l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~----~~~g~~~---~~~~~ 74 (149)
T 2pqq_A 4 DDV--LRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRT----SPDGREN---MLAVV 74 (149)
T ss_dssp GGG--GTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEE----CTTSSEE---EEEEE
T ss_pred HHH--hhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEE----CCCCcEE---EEEEc
Confidence 356 89999999999999999999999999999999999999999999999999999983 2344432 36889
Q ss_pred CCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHHHHHHHHHHHHHHHHH
Q 036610 368 EDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRRNQAALFLQSYWRFRE 435 (447)
Q Consensus 368 ~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~~~~~~~q~~~~~~~ 435 (447)
++|++|||..+ + ...++.++++|+++|+++.+++++|..++. +|. +...+++.+-++..
T Consensus 75 ~~g~~~G~~~~---~-----~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-~~~~~~~~~~~~l~ 134 (149)
T 2pqq_A 75 GPSELIGELSL---F-----DPGPRTATGTALTEVKLLALGHGDLQPWLNVRPE-VATALLRAVARRLR 134 (149)
T ss_dssp CTTCEESGGGG---T-----SCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTH-HHHHHHHHHHHHHH
T ss_pred CCcCEechHHh---c-----CCCCcceEEEEccceEEEEEeHHHHHHHHHhCcH-HHHHHHHHHHHHHH
Confidence 99999999865 1 123678999999999999999999999999 888 33334444444433
No 9
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.72 E-value=1.6e-17 Score=142.67 Aligned_cols=125 Identities=46% Similarity=0.794 Sum_probs=100.2
Q ss_pred cCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeec
Q 036610 288 RTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHL 367 (447)
Q Consensus 288 ~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l 367 (447)
.++ ++++|+|++++++.++.++..++.+.|++||+|+++||+++.+|||.+|.|++... .+|.+ ....+..+
T Consensus 5 ~~~--l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~-----~~g~~-~~~~~~~l 76 (137)
T 1wgp_A 5 SSG--VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTT-----DGGRS-GFYNRSLL 76 (137)
T ss_dssp SCS--CSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECC-----SSCSS-SSSCEEEC
T ss_pred HHH--HHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEc-----CCCcc-eeeeeeee
Confidence 356 89999999999999999999999999999999999999999999999999997641 34443 22112389
Q ss_pred CCCCeechhhhHhhccc-CCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 368 EDGDFFGKELIAWAQDE-SSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 368 ~~Gd~FGE~~l~~~l~~-~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
++||+|||..++++++. +....++++++++|+++|+++.|++++|..+++ +|.
T Consensus 77 ~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~ 131 (137)
T 1wgp_A 77 KEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRR 131 (137)
T ss_dssp CTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCC
T ss_pred cCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHh
Confidence 99999999874333332 111112467999999999999999999999998 664
No 10
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.71 E-value=7.2e-17 Score=140.95 Aligned_cols=127 Identities=17% Similarity=0.150 Sum_probs=103.8
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
++++|+|++++++.++.++..++.+.|.+|++|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++|++
T Consensus 14 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~----~~~g~~~---~~~~~~~G~~ 86 (154)
T 2z69_A 14 LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRL----TPEGQEK---ILEVTNERNT 86 (154)
T ss_dssp HTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC----CC--------CCEEECTTEE
T ss_pred hhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEE----CCCCCEE---EEEEccCCCe
Confidence 78999999999999999999999999999999999999999999999999999972 1344432 3688999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHHHHHHHHHHHHHHHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRRNQAALFLQSYWRFR 434 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~~~~~~~q~~~~~~ 434 (447)
|||..+. .+.+++.++++|.++|+++.+++++|..+++ +|. +...+++.+-++.
T Consensus 87 ~G~~~~~-------~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-~~~~l~~~~~~rl 141 (154)
T 2z69_A 87 FAEAMMF-------MDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTP-LALALLAKLSTRL 141 (154)
T ss_dssp ESGGGGG-------SSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHH-HHHHHHHHHHHHH
T ss_pred eccHhhc-------cCCCCCceEEEEccceEEEEECHHHHHHHHHHChH-HHHHHHHHHHHHH
Confidence 9998751 2223378999999999999999999999999 887 3444555444443
No 11
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.71 E-value=9.2e-17 Score=146.46 Aligned_cols=117 Identities=16% Similarity=0.264 Sum_probs=102.4
Q ss_pred ccCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeee
Q 036610 287 GRTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENH 366 (447)
Q Consensus 287 ~~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~ 366 (447)
..++ ++++|+|++++++.++.++..++.+.|.+|++|+++||+++.+|||.+|.|+++.. ..+|.+. .+..
T Consensus 37 ~~~~--L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~----~~~g~~~---~~~~ 107 (187)
T 3gyd_A 37 ILEI--VNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKD----IPNKGIQ---TIAK 107 (187)
T ss_dssp HHHH--HTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEE----ETTTEEE---EEEE
T ss_pred HHHH--HhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEE----CCCCCeE---EEEE
Confidence 3456 89999999999999999999999999999999999999999999999999999983 2344332 4688
Q ss_pred cCCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 367 LEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 367 l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+++|++|||..+. . ..+++++++|+++|+++.+++++|..+++ +|.
T Consensus 108 ~~~G~~fGe~~~l---~-----~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~ 154 (187)
T 3gyd_A 108 VGAGAIIGEMSMI---D-----GMPRSASCVASLPTDFAVLSRDALYQLLANMPK 154 (187)
T ss_dssp EETTCEESHHHHH---H-----CCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHH
T ss_pred ccCCCeeeeHHHh---C-----CCCeeEEEEECCCeEEEEEcHHHHHHHHHHChH
Confidence 9999999998752 1 13678999999999999999999999999 888
No 12
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.71 E-value=4.9e-17 Score=144.03 Aligned_cols=116 Identities=14% Similarity=0.153 Sum_probs=102.2
Q ss_pred ccCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeee
Q 036610 287 GRTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENH 366 (447)
Q Consensus 287 ~~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~ 366 (447)
..++ ++++|+|++++++.++.++..++.+.|.+|++|+++||+++.+|||.+|.|+++.. .+|... .+..
T Consensus 36 ~~~~--l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~-----~~g~~~---~~~~ 105 (161)
T 3idb_B 36 LQEA--CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVK-----CDGVGR---CVGN 105 (161)
T ss_dssp HHHH--HTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEE-----ETTEEE---EEEE
T ss_pred HHHH--HhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEc-----CCCCeE---EEEE
Confidence 3456 89999999999999999999999999999999999999999999999999999983 455432 4688
Q ss_pred cCCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 367 LEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 367 l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+++|++|||..+. ...+++++++|+++|+++.|++++|..+++ +|.
T Consensus 106 ~~~G~~fGe~~~~--------~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~ 152 (161)
T 3idb_B 106 YDNRGSFGELALM--------YNTPRAATITATSPGALWGLDRVTFRRIIVKNNA 152 (161)
T ss_dssp EESCCEECGGGGT--------CCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred cCCCCEechHHHH--------cCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHH
Confidence 9999999998761 124688999999999999999999999999 876
No 13
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.70 E-value=3e-16 Score=145.10 Aligned_cols=113 Identities=16% Similarity=0.250 Sum_probs=97.4
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
|+++|+|++++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++|++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~----~~~g~~~---~~~~~~~g~~ 73 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRT----HLGGQER---TLALLGPGEL 73 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEE----CSSSCEE---EEEEECTTCE
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEE----CCCCCEE---EEEEecCCCE
Confidence 46899999999999999999999999999999999999999999999999999982 2345432 4688999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
|||..+. . ..+++++++|+++|+++.+++++|..++. +|.
T Consensus 74 ~G~~~~~---~-----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 114 (216)
T 4ev0_A 74 FGEMSLL---D-----EGERSASAVAVEDTELLALFREDYLALIRRLPL 114 (216)
T ss_dssp ECHHHHH---H-----CCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHH
T ss_pred Eeehhhc---C-----CCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcH
Confidence 9998652 1 23578999999999999999999999999 888
No 14
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.69 E-value=1.6e-16 Score=144.77 Aligned_cols=113 Identities=12% Similarity=0.210 Sum_probs=99.1
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
++.+|.|.+++++.++.+...++.+.|++||+|+++||+++.+|||.+|.|+++.. ..+|.+. .+..++|||+
T Consensus 9 ~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~----~~~G~e~---~~~~~~~g~~ 81 (194)
T 3dn7_A 9 INHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFI----DEKGIEQ---TTQFAIENWW 81 (194)
T ss_dssp HHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE----CTTSCEE---EEEEEETTCE
T ss_pred HHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEE----CCCCCEE---EEEEccCCcE
Confidence 78899999999999999999999999999999999999999999999999999982 2445442 3678999999
Q ss_pred echh-hhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 373 FGKE-LIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 373 FGE~-~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
|||. ++ + +..+++++++|+++|+++.+++++|..++. +|.
T Consensus 82 ~ge~~~~---~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 123 (194)
T 3dn7_A 82 LSDYMAF---Q-----KQQPADFYIQSVENCELLSITYTEQENLFERIPA 123 (194)
T ss_dssp ECCHHHH---H-----HTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTT
T ss_pred EeehHHH---h-----cCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHH
Confidence 9986 33 1 124678999999999999999999999999 887
No 15
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.68 E-value=2.1e-16 Score=135.71 Aligned_cols=116 Identities=23% Similarity=0.293 Sum_probs=99.8
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
++++|+|++++++.++.++..++.+.|.+|++|+++||+++.+|||.+|.|+++. .+ . ..+++|++
T Consensus 13 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~------~~--~------~~~~~G~~ 78 (138)
T 1vp6_A 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVAT------PN--P------VELGPGAF 78 (138)
T ss_dssp HTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECS------SS--C------EEECTTCE
T ss_pred HHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEe------CC--c------ceECCCCE
Confidence 8999999999999999999999999999999999999999999999999999987 33 2 47899999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHHHHHHHHHHHHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRRNQAALFLQSYW 431 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~~~~~~~q~~~ 431 (447)
|||..+. . ..++..+++|.++|+++.+++++|..++. +|. +...+.+.+.
T Consensus 79 ~G~~~~~---~-----~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-~~~~~~~~~~ 129 (138)
T 1vp6_A 79 FGEMALI---S-----GEPRSATVSAATTVSLLSLHSADFQMLCSSSPE-IAEIFRKTAL 129 (138)
T ss_dssp ECHHHHH---H-----CCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHH
T ss_pred eeehHhc---c-----CCCceeEEEECCCEEEEEECHHHHHHHHHHCHH-HHHHHHHHHH
Confidence 9998652 1 12577999999999999999999999999 887 2333444333
No 16
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.68 E-value=8.2e-16 Score=144.54 Aligned_cols=128 Identities=13% Similarity=0.136 Sum_probs=106.0
Q ss_pred ccccccccCCCHHHHHHHHhc--cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCC
Q 036610 293 KMQVNEFENWSEKSLGYLCEF--LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDG 370 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~--l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~G 370 (447)
++++|+|++++++.++.++.. ++.+.|.+||+|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++|
T Consensus 20 l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~----~~~G~~~---~l~~~~~G 92 (232)
T 1zyb_A 20 LLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTN----AKENIYT---VIEQIEAP 92 (232)
T ss_dssp GGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE----CGGGSCE---EEEEEESS
T ss_pred HhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEE----CCCCCEE---EEEEccCC
Confidence 899999999999999999998 99999999999999999999999999999999872 2445442 46889999
Q ss_pred CeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHHHHHHHHHHHHHHHHH
Q 036610 371 DFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRRNQAALFLQSYWRFRE 435 (447)
Q Consensus 371 d~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~~~~~~~q~~~~~~~ 435 (447)
++|||..+ + .+.+++.++++|+++|+++.+++++|..++. .|. +...+++.+-++..
T Consensus 93 ~~fG~~~~---~----~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~l~~~l~~~l~ 150 (232)
T 1zyb_A 93 YLIEPQSL---F----GMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDI-FRLNYMNIVSNRAQ 150 (232)
T ss_dssp EEECGGGG---S----SSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHH-HHHHHHHHHHHHHH
T ss_pred CeeeehHH---h----CCCCCCceEEEEccceEEEEEEHHHHHHHhccCHH-HHHHHHHHHHHHHH
Confidence 99999875 1 2223378999999999999999999999999 887 33444444444433
No 17
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.67 E-value=1.3e-15 Score=142.24 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=96.5
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
+++.|+|.+++++.++.++..++.+.|++||+|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++|++
T Consensus 13 lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~----~~~G~~~---~~~~~~~g~~ 85 (230)
T 3iwz_A 13 VRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAE----EDDDREL---VLGYFGSGEF 85 (230)
T ss_dssp ---------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEE----CTTSCEE---EEEEECTTCE
T ss_pred hhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEE----CCCCCEE---EEEEecCCCE
Confidence 89999999999999999999999999999999999999999999999999999983 2445432 4688999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-C-----HHHHHHHHHHHHHHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-F-----RRNQAALFLQSYWRF 433 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f-----~~~~~~~~~q~~~~~ 433 (447)
|||..+ + .+.++++++++|+++|+++.+++++|..++. + |. +...+++.+-++
T Consensus 86 ~G~~~~---~----~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~-~~~~~~~~l~~~ 144 (230)
T 3iwz_A 86 VGEMGL---F----IESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPR-ILYAIGVQLSKR 144 (230)
T ss_dssp ESCGGG---T----SCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHH-HHHHHHHHHHHH
T ss_pred EEehhh---h----cCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcH-HHHHHHHHHHHH
Confidence 999875 1 2234678999999999999999999999999 8 76 333344443333
No 18
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.67 E-value=5.3e-16 Score=145.23 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=99.5
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
++++|+|++++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++|++
T Consensus 8 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~----~~~g~~~---~~~~~~~g~~ 80 (231)
T 3e97_A 8 LKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRV----SLGGRER---VLGDIYAPGV 80 (231)
T ss_dssp HHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEE----CC--CEE---EEEEEESSEE
T ss_pred HhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEE----CCCCceE---EEEecCCCCE
Confidence 89999999999999999999999999999999999999999999999999999983 2345432 3688999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
|||..+ + ...+++++++|+++|+++.+++++|..++. +|.
T Consensus 81 ~G~~~~---~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 121 (231)
T 3e97_A 81 VGETAV---L-----AHQERSASVRALTPVRTLMLHREHFELILRRHPR 121 (231)
T ss_dssp ESTTTT---T-----CCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHH
T ss_pred EeeHHH---h-----CCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHH
Confidence 999865 1 224688999999999999999999999999 887
No 19
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.67 E-value=4.3e-16 Score=145.46 Aligned_cols=113 Identities=18% Similarity=0.272 Sum_probs=100.1
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
++++|+|++++++.++.++..++.+.|.+||+|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++|++
T Consensus 8 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~----~~~g~~~---~~~~~~~G~~ 80 (227)
T 3d0s_A 8 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRR----APDGREN---LLTIMGPSDM 80 (227)
T ss_dssp HTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEE----CTTSCEE---EEEEECTTCE
T ss_pred HhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEE----CCCCcEE---EEEEecCCCE
Confidence 78999999999999999999999999999999999999999999999999999983 2345432 3688999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
|||..+. ...+++++++|+++|+++.+++++|..++. +|.
T Consensus 81 ~G~~~~~--------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 121 (227)
T 3d0s_A 81 FGELSIF--------DPGPRTSSATTITEVRAVSMDRDALRSWIADRPE 121 (227)
T ss_dssp ESCHHHH--------SCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHH
T ss_pred EeeHHHc--------CCCCceeEEEEcccEEEEEEeHHHHHHHHHHChH
Confidence 9998652 123678999999999999999999999999 888
No 20
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.67 E-value=1.5e-15 Score=140.90 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=99.9
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
++++|+|++++++.++.+...++.+.|++||+|+++||+++.+|||.+|.|+++.. ..+|.+. .+..++|||+
T Consensus 5 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~----~~~G~~~---~~~~~~~G~~ 77 (220)
T 3dv8_A 5 ENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYIL----SDEGREI---TLYRLFDMDM 77 (220)
T ss_dssp CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEE----CTTSCEE---EEEEECTTCE
T ss_pred HHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEE----CCCCCEE---EEEecCCCCe
Confidence 89999999999999999999999999999999999999999999999999999983 2445432 3688999999
Q ss_pred --echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 373 --FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 373 --FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
|||..+ + ...+++++++|+++|+++.+++++|..++. +|.
T Consensus 78 ~~~g~~~~---~-----~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~ 120 (220)
T 3dv8_A 78 CLLSASCI---M-----RSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAP 120 (220)
T ss_dssp ESGGGGGG---C-----TTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHH
T ss_pred eehhHHHH---h-----CCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHH
Confidence 788765 1 224678999999999999999999999999 888
No 21
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.67 E-value=2.3e-16 Score=153.78 Aligned_cols=128 Identities=13% Similarity=0.178 Sum_probs=115.7
Q ss_pred HhhcCHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeec
Q 036610 271 LSDLSQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRN 350 (447)
Q Consensus 271 l~~Lp~~Lr~ei~~~l~~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~ 350 (447)
..++|+..|.+.......+. ++++|+|++++++.+..|+..++.+.|.+|++|+++||+++.+|||++|.|++..
T Consensus 21 ~~~~p~~~rs~~~~~~i~~~--l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--- 95 (299)
T 3shr_A 21 MQAFRKFTKSERSKDLIKEA--ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--- 95 (299)
T ss_dssp -CCCCCCCCCHHHHHHHHHH--HHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---
T ss_pred cCCCCCcCCCHHHHHHHHHH--HhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---
Confidence 45799999999999888899 9999999999999999999999999999999999999999999999999999976
Q ss_pred ccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 351 VTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 351 ~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+|. .+..+++|++|||.++. ...++++|++|.++|+++.|++++|..++. .|.
T Consensus 96 ----~g~-----~~~~~~~G~~fGe~~ll--------~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~ 149 (299)
T 3shr_A 96 ----EGV-----KLCTMGPGKVFGELAIL--------YNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGL 149 (299)
T ss_dssp ----TTE-----EEEEECTTCEESCSGGG--------TTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHH
T ss_pred ----CCE-----EEEEeCCCCeeeHhHHh--------cCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHH
Confidence 443 36889999999998762 224788999999999999999999999999 776
No 22
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.66 E-value=5.5e-16 Score=145.73 Aligned_cols=127 Identities=11% Similarity=0.077 Sum_probs=106.5
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++||+
T Consensus 13 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~----~~~G~~~---~~~~~~~G~~ 85 (237)
T 3fx3_A 13 ARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRM----TPTGSEA---VVSVFTRGES 85 (237)
T ss_dssp HTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEE----CTTSCEE---EEEEEETTEE
T ss_pred HhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEE----CCCCCEE---EEEEeCCCCE
Confidence 89999999999999999999999999999999999999999999999999999983 2445432 4688999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHHHHHHHHHHHHHHHHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRRNQAALFLQSYWRFRE 435 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~~~~~~~q~~~~~~~ 435 (447)
|||..+. . ..+++++++|+++|+++.+++++|..++. +|. +...+++.+.++..
T Consensus 86 ~G~~~~~---~-----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~~l~ 140 (237)
T 3fx3_A 86 FGEAVAL---R-----NTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPE-ICISILATTFGHLH 140 (237)
T ss_dssp ECHHHHH---H-----TCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHHHH
T ss_pred echHHHh---c-----CCCCCceEEECCceEEEEEcHHHHHHHHHHCHH-HHHHHHHHHHHHHH
Confidence 9998762 1 23678999999999999999999999999 888 33434444444443
No 23
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-17 Score=140.32 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=95.1
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEec-CCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCC
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFI-ERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGD 371 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~-~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd 371 (447)
++++|+|++++++.++.++..++.+.|. +|++|+++||+++.+|||.+|.|+++. .+|.. .++++|+
T Consensus 18 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~------~~g~~------~~l~~G~ 85 (134)
T 2d93_A 18 MHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH------PDGKV------ENLFMGN 85 (134)
T ss_dssp HHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC------SSSCE------EEECTTC
T ss_pred HhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc------CCCcE------EEecCCC
Confidence 8899999999999999999999999999 999999999999999999999999997 66642 5689999
Q ss_pred eechhhhHhhcccCCCCCCCCccEE-EEcceEEEEEEcHhhHHHHHh-CH
Q 036610 372 FFGKELIAWAQDESSSNLPISNKTI-QALTDVEAFTLIADDLKHVLS-FR 419 (447)
Q Consensus 372 ~FGE~~l~~~l~~~~~~~~~~~~tv-~Alt~~el~~L~~~dl~~ll~-f~ 419 (447)
+|||..+ + ...++.+++ +|+++|+++.|++++|..+++ .+
T Consensus 86 ~fG~~~~---~-----~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 86 SFGITPT---L-----DKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp EESCCSS---S-----CCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ccChhHh---c-----CCCcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 9999865 1 223567788 999999999999999999987 54
No 24
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.65 E-value=5.9e-16 Score=144.24 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=99.9
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
++++|+|++++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. ..+|.+. .+..++||++
T Consensus 11 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~----~~~G~~~---~~~~~~~g~~ 83 (227)
T 3dkw_A 11 LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRL----TPEGQEK---ILEVTNERNT 83 (227)
T ss_dssp HTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBC----CGGGCCB---CCCEECTTEE
T ss_pred HhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEE----CCCCCEE---EEEEcCCCCE
Confidence 89999999999999999999999999999999999999999999999999999872 2345442 3688999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
|||..+ + .+.+.++++++|+++|+++.+++++|..++. +|.
T Consensus 84 ~G~~~~---~----~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 125 (227)
T 3dkw_A 84 FAEAMM---F----MDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTP 125 (227)
T ss_dssp ESCTTT---T----TTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTH
T ss_pred eeeHHh---c----CCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHH
Confidence 999865 1 1222378999999999999999999999999 888
No 25
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.65 E-value=4.1e-16 Score=137.11 Aligned_cols=110 Identities=18% Similarity=0.265 Sum_probs=98.2
Q ss_pred CcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecC
Q 036610 289 THLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLE 368 (447)
Q Consensus 289 ~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~ 368 (447)
++ ++++|+|++++++.+..++..++.+.|.+||+|+++||+++.+|||.+|.|+++. +|. .+..++
T Consensus 38 ~~--l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-------~~~-----~~~~~~ 103 (154)
T 3pna_A 38 KA--IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-------NNE-----WATSVG 103 (154)
T ss_dssp HH--HHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE-------TTE-----EEEEEC
T ss_pred HH--HHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE-------CCE-----EEEEec
Confidence 46 8999999999999999999999999999999999999999999999999999987 332 367899
Q ss_pred CCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 369 DGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 369 ~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+|++|||.++. . ..++.++++|+++|+++.|++++|..++. .|.
T Consensus 104 ~G~~fGe~~~~---~-----~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~ 148 (154)
T 3pna_A 104 EGGSFGELALI---Y-----GTPRAATVKAKTNVKLWGIDRDSYRRILMGSTL 148 (154)
T ss_dssp TTCEECCHHHH---H-----CCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHH
T ss_pred CCCEeeehHhh---c-----CCCcceEEEECcceEEEEEeHHHHHHHHHhChH
Confidence 99999998762 1 23578999999999999999999999998 665
No 26
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.64 E-value=2.1e-15 Score=141.30 Aligned_cols=113 Identities=12% Similarity=0.212 Sum_probs=97.1
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
..++|+|++++++.++.++..++.+.|++||+|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++|++
T Consensus 12 ~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~----~~~g~~~---~~~~~~~G~~ 84 (232)
T 2gau_A 12 HLLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILRE----GVYGRFH---ISRIVKPGQF 84 (232)
T ss_dssp GGSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC---------CCC---EEEEECTTCE
T ss_pred ccccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEE----CCCCCEE---EEEEeCCCCE
Confidence 35789999999999999999999999999999999999999999999999999972 2345442 4689999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
|||..+. . ..+++++++|+++|+++.+++++|..++. +|.
T Consensus 85 ~G~~~~~---~-----~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 125 (232)
T 2gau_A 85 FGMRPYF---A-----EETCSSTAIAVENSKVLAIPVEAIEALLKGNTS 125 (232)
T ss_dssp ESHHHHH---H-----TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHH
T ss_pred eeeehhh---C-----CCCcceEEEEecceEEEEEEHHHHHHHHHHCHH
Confidence 9998652 1 13578999999999999999999999999 888
No 27
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.63 E-value=1.4e-15 Score=148.15 Aligned_cols=135 Identities=19% Similarity=0.267 Sum_probs=111.4
Q ss_pred cCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccc-cCCCccccceeee
Q 036610 288 RTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTT-TTASNSRRSRENH 366 (447)
Q Consensus 288 ~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~-~dg~~~~~~~~~~ 366 (447)
.++ ++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++.. . .+|... .+..
T Consensus 156 ~~~--l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~----~~~~g~~~---~~~~ 226 (299)
T 3shr_A 156 MEF--LKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRE----DSPNEDPV---FLRT 226 (299)
T ss_dssp HHH--HTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEEC----CSSSCCCE---EEEE
T ss_pred HHH--HhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEe----cCCCCcce---EEEE
Confidence 356 88999999999999999999999999999999999999999999999999999983 1 133321 4688
Q ss_pred cCCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHHHHHHHHHHHHHHHHHHHhHh
Q 036610 367 LEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRRNQAALFLQSYWRFREFLRER 440 (447)
Q Consensus 367 l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~~~~~~~q~~~~~~~~~~~~ 440 (447)
+++||+|||.++ + ...++++|++|.++|+++.|++++|..++. +|. +...+++.+-++.+.+.+|
T Consensus 227 l~~G~~fGe~~l---l-----~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~-~~~~~~~~l~~r~~~~~~~ 292 (299)
T 3shr_A 227 LGKGDWFGEKAL---Q-----GEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDD-VSNKAYEDAEAKAKYEAEA 292 (299)
T ss_dssp EETTCEECGGGG---S-----SSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCC-CCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEeChHHH---h-----CCCCcceEEEECCCEEEEEEeHHHHHHHHccHHH-HHHHHHHHHhhhhhcchhh
Confidence 999999999976 1 224688999999999999999999999999 887 3455666666665544444
No 28
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.60 E-value=4.3e-15 Score=147.12 Aligned_cols=124 Identities=10% Similarity=0.123 Sum_probs=104.3
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
|+++|+|++++++.+..++..++.+.|.+||+|+++||+++.+|||.+|.|+++.. ..+|.+ .+..+++|++
T Consensus 15 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~----~~~g~~----~~~~~~~G~~ 86 (333)
T 4ava_A 15 LAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHV----GDDGVA----IIARALPGMI 86 (333)
T ss_dssp HTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEE----CTTCCE----EEEEECTTCE
T ss_pred HhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEE----CCCCcE----EEEEecCCCE
Confidence 89999999999999999999999999999999999999999999999999999983 133432 3688999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHhCHHHHHHHHHHHHHHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLSFRRNQAALFLQSYWRF 433 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~f~~~~~~~~~q~~~~~ 433 (447)
|||.++. . ..++++|++|+++|+++.|++++|..++++|. +...+++.+-+.
T Consensus 87 fGe~~l~---~-----~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~p~-~~~~~~~~~~~~ 138 (333)
T 4ava_A 87 VGEIALL---R-----DSPRSATVTTIEPLTGWTGGRGAFATMVHIPG-VGERLLRTARQR 138 (333)
T ss_dssp ESHHHHH---H-----TCBCSSEEEESSCEEEEEECHHHHHHHHHSTT-HHHHHHHHHHHH
T ss_pred eeHHHhc---C-----CCCceEEEEEecCEEEEEEcHHHHHHHHhChH-HHHHHHHHHHHH
Confidence 9998762 1 24688999999999999999999999997665 344444444443
No 29
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.60 E-value=1.5e-14 Score=132.99 Aligned_cols=110 Identities=12% Similarity=0.187 Sum_probs=91.9
Q ss_pred ccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechh
Q 036610 297 NEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKE 376 (447)
Q Consensus 297 plF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~ 376 (447)
++++.++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++|++|||.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~----~~~g~~~---~~~~~~~g~~~G~~ 74 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIK----DEEGKEM---ILSYLNQGDFIGEL 74 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE----CTTCCEE---EEEEEETTCEESCT
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEE----CCCCCEE---EEEEcCCCCEeeeH
Confidence 5677899999999999999999999999999999999999999999999983 2345432 36789999999998
Q ss_pred hhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 377 LIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 377 ~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
.+ ..+.++++++++|+++|+++.+++++|..++. +|.
T Consensus 75 ~~-------~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 112 (210)
T 3ryp_A 75 GL-------FEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD 112 (210)
T ss_dssp TT-------TSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTH
T ss_pred HH-------hcCCCCceEEEEECCcEEEEEEcHHHHHHHHHHChH
Confidence 65 12233688999999999999999999999999 887
No 30
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.59 E-value=7.5e-15 Score=136.47 Aligned_cols=105 Identities=14% Similarity=0.207 Sum_probs=95.0
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
++++|+|++++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|.+. .+..+++|++
T Consensus 6 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-----~~G~~~---~~~~~~~G~~ 77 (220)
T 2fmy_A 6 LTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLA-----YEDKEF---TLAILEAGDI 77 (220)
T ss_dssp SCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEE-----CSSCEE---EEEEEETTCE
T ss_pred hhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEEC-----CCCCEE---EEEEcCCCCE
Confidence 89999999999999999999999999999999999999999999999999999642 455442 4688999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
||| +++++++|+++|+++.+++++|..++. +|.
T Consensus 78 ~G~---------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 111 (220)
T 2fmy_A 78 FCT---------------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPA 111 (220)
T ss_dssp EES---------------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTH
T ss_pred eCC---------------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHH
Confidence 998 245899999999999999999999999 887
No 31
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.59 E-value=5.5e-16 Score=145.64 Aligned_cols=52 Identities=15% Similarity=0.314 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.|..|+||+++||||+||||+.|.+..|++++++.|++|+.++|+.+|++++
T Consensus 165 ~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~ 216 (223)
T 1orq_C 165 SVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSN 216 (223)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999987
No 32
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.2e-15 Score=139.21 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=100.4
Q ss_pred ccCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeee
Q 036610 287 GRTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENH 366 (447)
Q Consensus 287 ~~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~ 366 (447)
...+ ++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.++++. .+.+ .+..
T Consensus 123 ~~~~--l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~------~~~~-----~~~~ 189 (246)
T 3of1_A 123 YDDL--LKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSK------KGQG-----VINK 189 (246)
T ss_dssp SHHH--HHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEE------TTTE-----EEEE
T ss_pred HHHH--HhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEE------cCCc-----eEEE
Confidence 3455 7889999999999999999999999999999999999999999999999999998 3332 2688
Q ss_pred cCCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 367 LEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 367 l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+++||+|||.++.. ..++.+|++|.++|+++.|++++|..++. +|+
T Consensus 190 l~~g~~fGe~~~~~--------~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~ 236 (246)
T 3of1_A 190 LKDHDYFGEVALLN--------DLPRQATVTATKRTKVATLGKSGFQRLLGPAVD 236 (246)
T ss_dssp EETTCEECHHHHHH--------TCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHH
T ss_pred cCCCCcccHHHHhC--------CCCcccEEEECCCEEEEEEeHHHHHHHhccHHH
Confidence 99999999987621 23678999999999999999999999999 877
No 33
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.9e-15 Score=140.08 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=97.6
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
++++|+|++++++.++.++..++.+.|.+|++|+++||+++.+|||.+|.|+++. +|.. +..+++|++
T Consensus 9 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~-------~~~~-----~~~~~~g~~ 76 (246)
T 3of1_A 9 IRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-------NDNK-----VNSSGPGSS 76 (246)
T ss_dssp HHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES-------TTSC-----CEEECTTCE
T ss_pred HhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE-------CCEE-----EEecCCCCe
Confidence 8999999999999999999999999999999999999999999999999999987 3332 588999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
|||.++.. ..++++|++|.++|+++.|++++|..++. .|.
T Consensus 77 fGe~~l~~--------~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~ 117 (246)
T 3of1_A 77 FGELALMY--------NSPRAATVVATSDCLLWALDRLTFRKILLGSSF 117 (246)
T ss_dssp ECHHHHHH--------TCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTS
T ss_pred eehhHHhc--------CCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHH
Confidence 99987621 23678999999999999999999999999 775
No 34
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.57 E-value=4.8e-14 Score=129.31 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=90.2
Q ss_pred CCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhh
Q 036610 302 WSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWA 381 (447)
Q Consensus 302 l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~ 381 (447)
+|++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++|++|||..+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~----~~~G~~~---~~~~~~~g~~~G~~~~--- 70 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIE----DDDGREM---IIGYLNSGDFFGELGL--- 70 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE----CTTSCEE---EEEEEETTCEESCTTT---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEE----CCCCCEE---EEEEcCCCCCcccHHH---
Confidence 58899999999999999999999999999999999999999999972 2345432 4688999999999865
Q ss_pred cccCCCCCC---CCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 382 QDESSSNLP---ISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 382 l~~~~~~~~---~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+ .+.+ +++++++|+++|+++.+++++|..++. +|.
T Consensus 71 ~----~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 109 (207)
T 2oz6_A 71 F----EKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSE 109 (207)
T ss_dssp C----C-----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHH
T ss_pred h----cCCCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHH
Confidence 1 1222 678999999999999999999999999 888
No 35
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.57 E-value=2.4e-14 Score=138.71 Aligned_cols=114 Identities=19% Similarity=0.258 Sum_probs=99.6
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
++++++|+++++..+..++..++.+.|.+|++|+++||+++.+|||.+|.|++... ..+|++.. .+..+++|++
T Consensus 159 l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~----~~~~~~~~--~~~~l~~G~~ 232 (291)
T 2qcs_B 159 LSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQR----RSENEEFV--EVGRLGPSDY 232 (291)
T ss_dssp HHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEE----CSTTSCEE--EEEEECTTCE
T ss_pred HhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEe----cCCCCccE--EEEEeCCCCE
Confidence 78889999999999999999999999999999999999999999999999999973 12343221 4689999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
|||.++ + ...++++|++|.++|+++.|++++|..++. +|.
T Consensus 233 fGe~~l---l-----~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~ 273 (291)
T 2qcs_B 233 FGEIAL---L-----MNRPKAATVVARGPLKCVKLDRPRFERVLGPCSD 273 (291)
T ss_dssp ECSGGG---T-----CCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHH
T ss_pred ecHHHH---c-----CCCCcceEEEECCcEEEEEEcHHHHHHHhccHHH
Confidence 999876 1 223688999999999999999999999999 887
No 36
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.55 E-value=2.4e-14 Score=138.63 Aligned_cols=111 Identities=18% Similarity=0.265 Sum_probs=99.6
Q ss_pred cCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeec
Q 036610 288 RTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHL 367 (447)
Q Consensus 288 ~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l 367 (447)
.+. ++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++. +|. .+..+
T Consensus 38 ~~~--l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-------~g~-----~~~~l 103 (291)
T 2qcs_B 38 AKA--IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-------NNE-----WATSV 103 (291)
T ss_dssp HHH--TTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-------TTE-----EEEEE
T ss_pred HHH--HhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-------CCe-----EEEEc
Confidence 356 8999999999999999999999999999999999999999999999999999987 342 36899
Q ss_pred CCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 368 EDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 368 ~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
++||+|||.++. ...++.+|++|.++|+++.+++++|..++. .|.
T Consensus 104 ~~G~~fGe~~l~--------~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~ 149 (291)
T 2qcs_B 104 GEGGSFGELALI--------YGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTL 149 (291)
T ss_dssp CTTCEECGGGGT--------CCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHH
T ss_pred CCCCccchHHHh--------cCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHH
Confidence 999999998661 224688999999999999999999999998 776
No 37
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.54 E-value=7.9e-14 Score=133.48 Aligned_cols=109 Identities=12% Similarity=0.195 Sum_probs=90.0
Q ss_pred cccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhh
Q 036610 298 EFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKEL 377 (447)
Q Consensus 298 lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~ 377 (447)
+...++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++|++|||..
T Consensus 53 ~~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~----~~~G~e~---~~~~~~~G~~~Ge~~ 125 (260)
T 3kcc_A 53 LGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIK----DEEGKEM---ILSYLNQGDFIGELG 125 (260)
T ss_dssp ------CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEE----CTTCCEE---EEEEEETTCEESCTT
T ss_pred HcCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEE----CCCCCEE---EEEEcCCCCEEeehH
Confidence 345689999999999999999999999999999999999999999999983 2345432 468899999999986
Q ss_pred hHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 378 IAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 378 l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+ ..+.++++++++|+++|+++.+++++|..++. +|.
T Consensus 126 ~-------~~~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~ 162 (260)
T 3kcc_A 126 L-------FEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD 162 (260)
T ss_dssp T-------TSTTCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTH
T ss_pred H-------hCCCCCCceEEEECCCeEEEEEcHHHHHHHHHHCHH
Confidence 5 12233688999999999999999999999999 887
No 38
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.54 E-value=2.2e-14 Score=147.15 Aligned_cols=115 Identities=14% Similarity=0.168 Sum_probs=101.6
Q ss_pred cCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeec
Q 036610 288 RTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHL 367 (447)
Q Consensus 288 ~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l 367 (447)
.+. ++++|+|++++++.+..|+..++.+.|.+|++|+++||.++.+|||++|.|+++.. .+|... .+..+
T Consensus 144 ~~~--L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~-----~~G~~~---~v~~l 213 (416)
T 3tnp_B 144 QEA--CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVK-----CDGVGR---CVGNY 213 (416)
T ss_dssp HHH--HTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEE-----CSSCEE---EEEEE
T ss_pred HHH--HhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEe-----cCCCEE---EEEEe
Confidence 355 89999999999999999999999999999999999999999999999999999983 455432 36889
Q ss_pred CCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 368 EDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 368 ~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
++|++|||.+++ ...++.+|++|.++|+++.|++++|..++. .|.
T Consensus 214 ~~G~~fGe~all--------~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~ 259 (416)
T 3tnp_B 214 DNRGSFGELALM--------YNTPKAATITATSPGALWGLDRVTFRRIIVKNNA 259 (416)
T ss_dssp ESCCEECGGGGT--------SCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred cCCCEEeeHHHh--------cCCCcccEEEEccCeEEEEEeehhhhhhhhcchh
Confidence 999999998762 124688999999999999999999999998 776
No 39
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.54 E-value=5e-14 Score=130.55 Aligned_cols=112 Identities=15% Similarity=0.180 Sum_probs=88.8
Q ss_pred ccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 295 QVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 295 ~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
.-|.|.+.++.....+...++.+.|.+|++|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++|++||
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~----~~~G~~~---~~~~~~~G~~~G 75 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHV----SENGKTL---EIDEIKPVQIIA 75 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEE----CTTSCEE---EEEEECSSEESS
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEE----CCCCCEE---EEEEecCCCEee
Confidence 347888999999999999999999999999999999999999999999999982 2345432 368899999999
Q ss_pred hhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 375 KELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 375 E~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
|..+ + .+.+++.++++|+++|+++.+++++|..++. +|.
T Consensus 76 ~~~~---~----~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 115 (213)
T 1o5l_A 76 SGFI---F----SSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRE 115 (213)
T ss_dssp GGGT---T----SSSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHH
T ss_pred eHHH---h----cCCCCceEEEEEccceEEEEEeHHHHHHHHHHCHH
Confidence 9865 1 2223678999999999999999999999999 888
No 40
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.53 E-value=2.3e-14 Score=133.51 Aligned_cols=105 Identities=12% Similarity=0.071 Sum_probs=94.5
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
++++|+|++++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|.+. .+..+++|++
T Consensus 2 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-----~~G~~~---~~~~~~~G~~ 73 (222)
T 1ft9_A 2 PPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLV-----GEEREI---SLFYLTSGDM 73 (222)
T ss_dssp CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEE-----ETTEEE---EEEEEETTCE
T ss_pred cccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEEC-----CCCCEE---EEEEcCCCCE
Confidence 68899999999999999999999999999999999999999999999999999742 455432 4688999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
|| . +++++++|+++|+++.+++++|..++. +|.
T Consensus 74 fG-~--------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 107 (222)
T 1ft9_A 74 FC-M--------------HSGCLVEATERTEVRFADIRTFEQKLQTCPS 107 (222)
T ss_dssp EE-S--------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGG
T ss_pred ec-C--------------CCCEEEEEccceEEEEEeHHHHHHHHHHChH
Confidence 99 1 467899999999999999999999999 887
No 41
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.51 E-value=3.6e-14 Score=147.02 Aligned_cols=131 Identities=20% Similarity=0.178 Sum_probs=110.2
Q ss_pred cCHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccc
Q 036610 274 LSQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTT 353 (447)
Q Consensus 274 Lp~~Lr~ei~~~l~~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~ 353 (447)
.|+..|.+-......+. ++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++.. .
T Consensus 27 ~~~~~rt~~~~~~i~~~--l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~----~ 100 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTR--LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVS----E 100 (469)
T ss_dssp SCSTTCCHHHHHHHHHH--HTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEC----S
T ss_pred CChhhCCHHHHHHHHHH--HhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEe----c
Confidence 45666766666666677 99999999999999999999999999999999999999999999999999999982 2
Q ss_pred cCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 354 TTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 354 ~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
.+|.... ..+..+++|++|||.++ ...++++|++|.++|+++.|++++|..++. +|.
T Consensus 101 ~~g~~~~-~~~~~~~~G~~fGe~~l---------~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~ 158 (469)
T 1o7f_A 101 TSSHQDA-VTICTLGIGTAFGESIL---------DNTPRHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (469)
T ss_dssp SSCGGGC-EEEEEECTTCEECGGGG---------GTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGG
T ss_pred CCCCCcc-eEEEEccCCCCcchhhh---------CCCCccceEEEccceeEEEEcHHHHHHHHHhCHH
Confidence 3443211 14689999999999752 123678999999999999999999999998 775
No 42
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.51 E-value=1.2e-13 Score=130.99 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=99.4
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
+.++..+..++++.++.+...++.+.|++|++|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++|++
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~----~~~G~~~---~~~~~~~G~~ 83 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDII----FEDGSEK---LLYYAGGNSL 83 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEE----CTTSCEE---EEEEECTTCE
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEE----CCCCCEE---EEEEecCCCE
Confidence 34444448999999999999999999999999999999999999999999999983 2445432 4688999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHHHHHHHHHHHHHHHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRRNQAALFLQSYWRFR 434 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~~~~~~~q~~~~~~ 434 (447)
||| .+ ... ++++++|+++|+++.+++++|..++. .|. +...+++.+.++.
T Consensus 84 ~G~-~l---------~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~l~~~l~~~l 134 (250)
T 3e6c_C 84 IGK-LY---------PTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDED-MIFEIFKNYLTKV 134 (250)
T ss_dssp ECC-CS---------CCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTH-HHHHHHHHHHHHH
T ss_pred Eee-ec---------CCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHH-HHHHHHHHHHHHH
Confidence 999 43 123 78999999999999999999999999 887 3333444444443
No 43
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.51 E-value=8.1e-14 Score=142.92 Aligned_cols=118 Identities=11% Similarity=0.163 Sum_probs=101.5
Q ss_pred HccCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccC------CCcc
Q 036610 286 IGRTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTT------ASNS 359 (447)
Q Consensus 286 l~~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~d------g~~~ 359 (447)
++..+ ++++++|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++.. ..+ |..
T Consensus 264 ~~~~~--L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~----~~~~~~~~~g~~- 336 (416)
T 3tnp_B 264 MYESF--IESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMK----RKGKSEVEENGA- 336 (416)
T ss_dssp SSSSS--GGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC-----------------
T ss_pred HHHHH--HhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEe----cCCcccccCCce-
Confidence 45677 89999999999999999999999999999999999999999999999999999972 111 222
Q ss_pred ccceeeecCCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 360 RRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 360 ~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
..+..+++|++|||.+++ ...++++||+|+++|+++.|++++|..++. +|.
T Consensus 337 --~~l~~l~~G~~fGE~all--------~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~ 388 (416)
T 3tnp_B 337 --VEIARCFRGQYFGELALV--------TNKPRAASAHAIGTVKCLAMDVQAFERLLGPCME 388 (416)
T ss_dssp --CEEEEECTTCEESGGGGT--------CCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHH
T ss_pred --eEEEEeCCCCEecHHHHh--------CCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHH
Confidence 146899999999998761 224689999999999999999999999999 887
No 44
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.50 E-value=3.9e-14 Score=143.61 Aligned_cols=118 Identities=17% Similarity=0.219 Sum_probs=101.9
Q ss_pred ccCcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeee
Q 036610 287 GRTHLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENH 366 (447)
Q Consensus 287 ~~~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~ 366 (447)
+..+ ++++++|+++++..+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++.. ..+|++.. .+..
T Consensus 246 ~~~~--L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~----~~~~~~~~--~v~~ 317 (381)
T 4din_B 246 YEEF--LSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQR----RSPNEEYV--EVGR 317 (381)
T ss_dssp HHHH--HHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECC----SSSSSCCC--EEEE
T ss_pred HHHH--hhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEe----cCCCCceE--EEEE
Confidence 3456 88999999999999999999999999999999999999999999999999999982 12343221 3688
Q ss_pred cCCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 367 LEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 367 l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+++||+|||.+++ ...++++||+|.++|+++.|++++|..++. +|+
T Consensus 318 l~~Gd~fGe~all--------~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~ 364 (381)
T 4din_B 318 LGPSDYFGEIALL--------LNRPRAATVVARGPLKCVKLDRPRFERVLGPCSE 364 (381)
T ss_dssp ECTTCEECTTGGG--------SCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHH
T ss_pred eCCCCEechHHHh--------CCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHH
Confidence 9999999998762 123688999999999999999999999999 886
No 45
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.50 E-value=5.4e-14 Score=142.50 Aligned_cols=110 Identities=17% Similarity=0.251 Sum_probs=99.2
Q ss_pred CcccccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecC
Q 036610 289 THLEKMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLE 368 (447)
Q Consensus 289 ~~~~L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~ 368 (447)
+. ++++|+|++++++.+..|+..++.+.|.+|++|+++||+++.+|||.+|.|+++. +|. .+..++
T Consensus 130 ~~--l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~-------~~~-----~v~~l~ 195 (381)
T 4din_B 130 KA--ISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV-------NGE-----WVTNIS 195 (381)
T ss_dssp HH--HTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE-------TTE-----EEEEEE
T ss_pred HH--HhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE-------CCe-----EeeeCC
Confidence 45 8999999999999999999999999999999999999999999999999999997 332 367899
Q ss_pred CCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 369 DGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 369 ~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
+|++|||.+++ ...++++|++|.++|+++.|++++|..++. .|.
T Consensus 196 ~G~~fGe~all--------~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~ 240 (381)
T 4din_B 196 EGGSFGELALI--------YGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTL 240 (381)
T ss_dssp SSCCBCGGGGT--------SCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHH
T ss_pred CCCEEEchHHh--------cCCCcceEEEECCCEEEEEEchHHHHHhhhhhhH
Confidence 99999998762 124688999999999999999999999999 776
No 46
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.49 E-value=7.3e-14 Score=123.65 Aligned_cols=52 Identities=10% Similarity=0.200 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.|..|+||++.|||||||||+.|.+..+++++++.|++|+.++|+.+|.+.+
T Consensus 84 s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~ 135 (155)
T 2a9h_A 84 SYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVAT 135 (155)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999987
No 47
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.46 E-value=1.7e-13 Score=141.94 Aligned_cols=112 Identities=16% Similarity=0.153 Sum_probs=98.6
Q ss_pred cCcccccccccccCCCHHHHHHHHhccEe-EEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeee
Q 036610 288 RTHLEKMQVNEFENWSEKSLGYLCEFLKP-VLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENH 366 (447)
Q Consensus 288 ~~~~~L~~vplF~~l~~~~l~~L~~~l~~-~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~ 366 (447)
.+. ++++|+|++++++.++.++..++. +.|.+|++|+++||+++.+|||.+|.|+++. .+ .. .+..
T Consensus 336 ~~~--l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~------~~-~~----~~~~ 402 (469)
T 1o7f_A 336 YDE--LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI------YG-KG----VVCT 402 (469)
T ss_dssp HHH--HTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE------TT-TE----EEEE
T ss_pred HHH--HhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE------cC-Ce----eEEE
Confidence 356 889999999999999999999985 4899999999999999999999999999998 32 22 3689
Q ss_pred cCCCCeechhhhHhhcccCCCCCCCCccEEEEcc-eEEEEEEcHhhHHHHHh-CHH
Q 036610 367 LEDGDFFGKELIAWAQDESSSNLPISNKTIQALT-DVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 367 l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt-~~el~~L~~~dl~~ll~-f~~ 420 (447)
+++||+|||.++ + ...++++|++|++ +|+++.|++++|..++. +|.
T Consensus 403 l~~G~~fGe~~l---l-----~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~ 450 (469)
T 1o7f_A 403 LHEGDDFGKLAL---V-----NDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA 450 (469)
T ss_dssp EETTCEECGGGG---T-----CCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTC
T ss_pred ecCCCEEEEehh---h-----cCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChH
Confidence 999999999876 1 2346899999999 79999999999999999 887
No 48
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.45 E-value=1.3e-14 Score=152.49 Aligned_cols=109 Identities=10% Similarity=0.100 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH--HHH-HHHhh------HHHHhcccccc
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI--ETA-RSQKI------NPRWQGLKQSK 235 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~--~~~-~~k~~------v~~~m~~~~~~ 235 (447)
.|..|+||++.||||+||||+.|.+..+++|++++|++|.+++++.+|.+.+ ++. +.+++ .+.++ .
T Consensus 375 s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~~~~~~l~~h~i-----i 449 (514)
T 2r9r_B 375 SIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVT-----S 449 (514)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC------------------
T ss_pred chhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEE-----E
Confidence 4778999999999999999999998899999999999999999999998876 111 11110 22233 3
Q ss_pred ccCCCHhHHHHHHHHHHHHHHhhhccccchhHHHHHhhcCHHHHHHHHHHHccCc
Q 036610 236 HYAVISGDRKVLRKFKKAKRENLVNKHVDVHINSFLSDLSQDAANEVKRLIGRTH 290 (447)
Q Consensus 236 ~~~lp~~L~~rv~~y~~~~w~~~~~~~~d~~e~~il~~Lp~~Lr~ei~~~l~~~~ 290 (447)
....|.....+ ++ + ++..+ ++.-..+|.+.++.++..+.....
T Consensus 450 cg~~~~~~~l~--~~------~--~~~~~--~~s~~~el~e~~~~~~~~~~~~~~ 492 (514)
T 2r9r_B 450 SPKIPSSPDLK--KS------R--SASTI--SKSDYMEIQEGVNNSNEDFREENL 492 (514)
T ss_dssp -------------------------------------------------------
T ss_pred eCCCccchhHH--hc------c--cCCCc--cccccccccccccccccccccccc
Confidence 33333322211 10 1 23333 566678889999998887655443
No 49
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.45 E-value=4e-13 Score=152.07 Aligned_cols=115 Identities=22% Similarity=0.254 Sum_probs=98.7
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
|+++++|+++++..+.+||.+++.+.|.+||+||++||+++.+|+|++|+|+|+.. .+++.... ..+..+++|+.
T Consensus 44 Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~----~~~~~~~~-~~v~~l~~G~s 118 (999)
T 4f7z_A 44 LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVS----ETSSHQDA-VTICTLGIGTA 118 (999)
T ss_dssp HTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEC----SSSCTTSC-EEEEEEETTCE
T ss_pred HhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEe----cCCCCCCc-eeEEEecCCcc
Confidence 79999999999999999999999999999999999999999999999999999973 12222111 24688999999
Q ss_pred echhhhHhhcccCCCCCCCCccEEEEcceEEEEEEcHhhHHHHHh-CHHH
Q 036610 373 FGKELIAWAQDESSSNLPISNKTIQALTDVEAFTLIADDLKHVLS-FRRN 421 (447)
Q Consensus 373 FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~~ 421 (447)
|||..+ .+ .++++||+|.++|+++.|++++|+.+.. +|+.
T Consensus 119 FGEall--------~n-~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~ 159 (999)
T 4f7z_A 119 FGESIL--------DN-TPRHATIVTRESSELLRIEQEDFKALWEKYRQY 159 (999)
T ss_dssp ECGGGG--------GT-CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHH
T ss_pred hhhhhc--------cC-CCcceEEEeccceEEEEEEHHHHHHHHHhChHH
Confidence 999432 12 3689999999999999999999999998 8873
No 50
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.41 E-value=7.1e-13 Score=115.01 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 166 LLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 166 Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
|..|+||+++|||||||||++|.+..+++++++.|++|+.++|+++|.+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~ 94 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITN 94 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999987
No 51
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.40 E-value=3.4e-12 Score=120.60 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=86.7
Q ss_pred HHHHHHHHhccE---eEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHh
Q 036610 304 EKSLGYLCEFLK---PVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAW 380 (447)
Q Consensus 304 ~~~l~~L~~~l~---~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~ 380 (447)
+++++.++.... .+.|++||+|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++|++|||..+.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~----~~~G~~~---~l~~~~~g~~~G~~~~~- 101 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRV----YEAGEEI---TVALLRENSVFGVLSLL- 101 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEE----CTTCCEE---EEEEECTTCEESCHHHH-
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEE----CCCCCEE---EEEEecCCCEEcchHHh-
Confidence 678888888888 999999999999999999999999999999983 2445432 46889999999998652
Q ss_pred hcccCCCCCC-CCccEEEEcceEEEEEEcHhhHHHHHh-CHH
Q 036610 381 AQDESSSNLP-ISNKTIQALTDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 381 ~l~~~~~~~~-~~~~tv~Alt~~el~~L~~~dl~~ll~-f~~ 420 (447)
. +.+ ++.++++|+++|+++.+++++|..++. +|.
T Consensus 102 --~----~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 137 (243)
T 3la7_A 102 --T----GNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPE 137 (243)
T ss_dssp --S----SCCSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHH
T ss_pred --C----CCCCcceEEEEEccceEEEEEcHHHHHHHHHHCHH
Confidence 1 122 245899999999999999999999999 888
No 52
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.39 E-value=3.9e-12 Score=111.88 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH----H---------------HHHHHhh-H
Q 036610 166 LLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI----E---------------TARSQKI-N 225 (447)
Q Consensus 166 Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~----~---------------~~~~k~~-v 225 (447)
|..|+||+++|+|||||||+.|.+..+++|+++.+++|+.++++.+|++.. + +...+.+ +
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999988899999999999999999999999864 0 0011112 6
Q ss_pred HHHhccccccccCCCHhHHHH
Q 036610 226 PRWQGLKQSKHYAVISGDRKV 246 (447)
Q Consensus 226 ~~~m~~~~~~~~~lp~~L~~r 246 (447)
++++ +.++.|++|+.|
T Consensus 133 ~~~~-----~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKL-----AEHSRQGSLVPR 148 (148)
T ss_dssp HHHH-----HHHTTC------
T ss_pred HHHH-----HhcCCCcCCCCC
Confidence 6777 778888888765
No 53
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.39 E-value=1.2e-12 Score=111.33 Aligned_cols=52 Identities=10% Similarity=0.176 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.|..|+||++.|+|||||||++|.+..+++++++.+++|+.++|+.+|++++
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~ 112 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALAT 112 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999988
No 54
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.38 E-value=4.3e-12 Score=119.43 Aligned_cols=106 Identities=17% Similarity=0.182 Sum_probs=85.0
Q ss_pred cCCCHHHHHHHHh--ccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhh
Q 036610 300 ENWSEKSLGYLCE--FLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKEL 377 (447)
Q Consensus 300 ~~l~~~~l~~L~~--~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~ 377 (447)
++++++.++.+.. .++.+.|++||+|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+ +|++|||..
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~----~~~G~e~---~~~~~-~G~~~Ge~~ 73 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSI----SENGTIM---NLQYY-KGAFVIMSG 73 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEE----CTTSCEE---EEEEE-ESSEEEESB
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEE----CCCCCEE---EEEEc-CCCEecchh
Confidence 4678999999884 589999999999999999999999999999999983 2445442 35667 999999986
Q ss_pred hHhhcccCCCCCCC-CccEEEEc-ceEEEEEEcHhhHHHHHh-CHH
Q 036610 378 IAWAQDESSSNLPI-SNKTIQAL-TDVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 378 l~~~l~~~~~~~~~-~~~tv~Al-t~~el~~L~~~dl~~ll~-f~~ 420 (447)
+ + .+.++ +..++.|+ ++|+++.+++++|..++. .|.
T Consensus 74 ~---~----~~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~ 112 (238)
T 2bgc_A 74 F---I----DTETSVGYYNLEVISEQATAYVIKINELKELLSKNLT 112 (238)
T ss_dssp C---T----TTCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHH
T ss_pred h---h----cCCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHH
Confidence 5 1 12221 35778888 599999999999999999 888
No 55
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.38 E-value=1.9e-12 Score=146.56 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=93.5
Q ss_pred ccccccccCCCHHHHHHHHhccEeEE-ecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCC
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVL-FIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGD 371 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~-~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd 371 (447)
+.++|.|++++....+.++..+.... +.+|++|++|||.++.+|||++|.|+|+. ...+ .+.++++||
T Consensus 339 L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~------~~~~-----~v~~L~~Gd 407 (999)
T 4f7z_A 339 LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI------YGKG-----VVCTLHEGD 407 (999)
T ss_dssp HTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE------TTTE-----EEEEEETTC
T ss_pred HHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE------cCCc-----ceEEecCCC
Confidence 78999999999999999999998755 57899999999999999999999999998 2222 368999999
Q ss_pred eechhhhHhhcccCCCCCCCCccEEEEcce-EEEEEEcHhhHHHHHh
Q 036610 372 FFGKELIAWAQDESSSNLPISNKTIQALTD-VEAFTLIADDLKHVLS 417 (447)
Q Consensus 372 ~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~-~el~~L~~~dl~~ll~ 417 (447)
+|||.+++ +..|+.+||+|.++ |+++.++++||..++.
T Consensus 408 ~FGElALL--------~~~PR~aTV~a~~d~c~fl~i~k~df~~il~ 446 (999)
T 4f7z_A 408 DFGKLALV--------NDAPRAASIVLREDNCHFLRVDKEDGNRILR 446 (999)
T ss_dssp EECGGGGT--------CSCBCSSEEEESSSSEEEEEEEHHHHHHHHH
T ss_pred cccchhhc--------cCCCeeEEEEEecCceEEEEeeHHHHHHHHh
Confidence 99999872 33578999999985 9999999999999987
No 56
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.37 E-value=1e-12 Score=142.84 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=106.2
Q ss_pred HHHHhhcCHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHhccE-eEEecCCCeeEccCCCcCeEEEEEeeEEEEE
Q 036610 268 NSFLSDLSQDAANEVKRLIGRTHLEKMQVNEFENWSEKSLGYLCEFLK-PVLFIERTRIIRAGDPIDEMIFVLKGKLWTY 346 (447)
Q Consensus 268 ~~il~~Lp~~Lr~ei~~~l~~~~~~L~~vplF~~l~~~~l~~L~~~l~-~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~ 346 (447)
..+|...|.. |.+-......+. ++++|+|++++++.++.++..++ .+.|++|++|+++||+++.+|||++|.|+++
T Consensus 12 r~iL~k~p~~-r~~~d~~~l~~~--L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~ 88 (694)
T 3cf6_E 12 RMILRKPPGQ-RTVDDLEIIYDE--LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVV 88 (694)
T ss_dssp HHHHHSCGGG-CCHHHHHHHHHH--HTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEE
T ss_pred HHHHcCChhh-CCHHHHHHHHHH--HHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEE
Confidence 3455444443 433333333456 89999999999999999999998 6899999999999999999999999999999
Q ss_pred EeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEEEEcc-eEEEEEEcHhhHHHHHh-CHH
Q 036610 347 ASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALT-DVEAFTLIADDLKHVLS-FRR 420 (447)
Q Consensus 347 ~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt-~~el~~L~~~dl~~ll~-f~~ 420 (447)
. . |.. .+..+++||+|||.++. . ..+++++++|++ +|+++.+++++|..++. .|.
T Consensus 89 ~------~-g~~----il~~l~~Gd~fGe~al~---~-----~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~ 145 (694)
T 3cf6_E 89 I------Y-GKG----VVCTLHEGDDFGKLALV---N-----DAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA 145 (694)
T ss_dssp E------T-TTE----EEEEEETTCEECHHHHH---H-----TCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCC
T ss_pred E------e-CCE----EEEEeCCCCEeehHHHh---C-----CCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHH
Confidence 8 3 322 36899999999998662 1 235789999999 59999999999999998 776
No 57
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.26 E-value=3.4e-11 Score=109.65 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=68.6
Q ss_pred EEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEE
Q 036610 317 VLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTI 396 (447)
Q Consensus 317 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv 396 (447)
+.|++||+|+++||+++.+|||.+|.|+++.. ..+|.+. .+..+++|++||| .+ + ...++++++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~----~~~g~~~---~~~~~~~G~~~Ge-~~---~-----~~~~~~~~~ 65 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVEL----LPDGRLI---TLRHVLPGDYFGE-EA---L-----EGKAYRYTA 65 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEE----CTTSCEE---EEEEECTTCEECG-GG---G-----TCSBCSSEE
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEE----CCCCCEE---EEEEecCCCEech-hh---h-----CCCCceeEE
Confidence 57999999999999999999999999999983 2345432 4688999999999 76 1 123678999
Q ss_pred EEcceEEEEEEcHhhHH
Q 036610 397 QALTDVEAFTLIADDLK 413 (447)
Q Consensus 397 ~Alt~~el~~L~~~dl~ 413 (447)
+|+++|+++.+++++|.
T Consensus 66 ~A~~~~~v~~i~~~~~~ 82 (195)
T 3b02_A 66 EAMTEAVVQGLEPRAMD 82 (195)
T ss_dssp EESSSEEEEEECGGGCC
T ss_pred EECCcEEEEEEcHHHcC
Confidence 99999999999999997
No 58
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.14 E-value=1.1e-10 Score=106.74 Aligned_cols=86 Identities=22% Similarity=0.167 Sum_probs=68.7
Q ss_pred HhccEeEEecCCCeeEccCCCc--CeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCC
Q 036610 311 CEFLKPVLFIERTRIIRAGDPI--DEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSN 388 (447)
Q Consensus 311 ~~~l~~~~~~~ge~I~~eGd~~--~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~ 388 (447)
...++.+.|++|++|+++||++ +.+|||.+|.|+++.. ..+|.+. .+..++|||+||| .++ .
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~----~~~G~~~---~~~~~~~g~~~G~-~~l---~----- 65 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAV----DEEGNAL---TLRLVRPGGFFGE-EAL---F----- 65 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEE----CTTSCEE---EEEEECTTCEECT-HHH---H-----
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEE----CCCCcEE---EEEEecCCCEeee-hhc---C-----
Confidence 4567889999999999999999 9999999999999983 2345442 3688999999999 542 1
Q ss_pred CCCCccEEEEcceEEEEEEcHhhHH
Q 036610 389 LPISNKTIQALTDVEAFTLIADDLK 413 (447)
Q Consensus 389 ~~~~~~tv~Alt~~el~~L~~~dl~ 413 (447)
..+++++++|+++|+++.+ +++|+
T Consensus 66 ~~~~~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 66 GQERIYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp TCCBCSEEEESSCEEEEEC-CSSCC
T ss_pred CCCcceEEEEcccEEEEEE-hHhcC
Confidence 1357899999999999999 98886
No 59
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.07 E-value=2.5e-10 Score=99.07 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.|..|+||+++|+|||||||+.|.+..+++++++.+++|+.++++++|.+.+
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~ 91 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALAT 91 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999988899999999999999999999999987
No 60
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.02 E-value=2.7e-09 Score=89.41 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 166 LLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 166 Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
|..|+||++.|+|||||||+.|.+..+++++++.+++|+.++++.+|++.+
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~ 100 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAV 100 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999998899999999999999999999999887
No 61
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.95 E-value=1.3e-09 Score=85.84 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 166 LLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 166 Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
|..|+||+++|+||+||||+.|.+..+++++++.++.|..++++.+|++++
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~ 79 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLE 79 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999988999999999999999999999999864
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.95 E-value=2e-09 Score=87.53 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 166 LLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 166 Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
|..|+||+++|+|||||||+.|.+..+++++++.+++|..++++++|+++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~ 83 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAV 83 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999988899999999999999999999999987
No 63
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.89 E-value=3.1e-10 Score=93.35 Aligned_cols=52 Identities=10% Similarity=0.176 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.|..|+||++.|+|||||||++|.+..+++++++.+++|+.++++++|++.+
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~ 91 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALAT 91 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999999999999988889999999999999999999999987
No 64
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.77 E-value=8.6e-10 Score=98.68 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.|..|+||+++|+|||||||+.|.+..+++++++.+++|++++|+++|.+.+
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~ 118 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALAT 118 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSS
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667899999999999999999988899999999999999999999999977
No 65
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.71 E-value=3e-08 Score=96.85 Aligned_cols=52 Identities=8% Similarity=0.109 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.|..|+||++.|+|||||||+.|.+...++++++.+++|++++|+++|.+.+
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~ 133 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYA 133 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999889999999999999999999998876
No 66
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.69 E-value=4.8e-08 Score=95.32 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.|..|+||+++|+|||||||+.|.+...++|+++.+++|+.+++++++++++
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~ 166 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGD 166 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999987
No 67
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.67 E-value=1.9e-08 Score=99.49 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 166 LLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 166 Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
|..|+||++.|+|||||||+.|.+...++++++.+++|++++|+++|.+.+
T Consensus 97 ~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~ 147 (333)
T 1p7b_A 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFA 147 (333)
T ss_dssp THHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999999999999999999977
No 68
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.52 E-value=1.1e-07 Score=93.49 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.|..|+||++.|||||||||+.|.+...++++++.|++|++++|+++|.+.+
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~ 129 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFI 129 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999987
No 69
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.33 E-value=6.8e-07 Score=85.91 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.|..|+||+++|+|||||||++|.+...++|+++.+++|+.+++++++++..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~ 144 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQ 144 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999876
No 70
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.30 E-value=1.7e-06 Score=91.70 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 036610 166 LLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGR 213 (447)
Q Consensus 166 Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~ 213 (447)
|..|+||++.|||||||||++|.+..+++|+++.+++|+.++++.+|.
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~ 99 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPF 99 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999899999999999999999999988
No 71
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.27 E-value=4.7e-06 Score=82.25 Aligned_cols=51 Identities=12% Similarity=0.304 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhcccCCCccCCC--ChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 166 LLHCLHWGLQKLSAFGQDLETSD--DVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 166 Y~~slYwa~~tltTvG~g~~~~~--~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
+..++||++.|+|||||||+.|+ +..-++++++.+++|.++.|+.+|-+.+
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~a 144 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFV 144 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998775 5667889999999999999999998877
No 72
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.13 E-value=3.3e-06 Score=81.16 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChh-------hHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVG-------ENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~-------E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.|+.|+||++.|+|||||||+.|.+.. -++|+++.+++|+.+++++++.+.+
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~ 259 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCE 259 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999998876653 3999999999999999999999977
No 73
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.13 E-value=1.9e-06 Score=84.03 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhH------HHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGEN------IFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~------~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.|+.|+||++.|+|||||||+.|.+...+ +|+++.+++|+.++++++|.+++
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~ 281 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGN 281 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999888766665 69999999999999999998877
No 74
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.08 E-value=3.5e-07 Score=90.58 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 166 LLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 166 Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
|..|+||++.|+||+||||+.|.+..+++|+++.+++|+.++++++|.+.+
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~ 96 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE 96 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999999988888889999999999999999999999876
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.04 E-value=1.3e-05 Score=79.30 Aligned_cols=52 Identities=12% Similarity=0.282 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhcccCCCccCC--CChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETS--DDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~--~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
.+..++||++.|+||||||++.+ .+..-++++++.+++|.++.|+.+|-+.+
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~a 147 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMA 147 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999998765 36778889999999999999999998876
No 76
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.96 E-value=3.6e-06 Score=81.38 Aligned_cols=54 Identities=7% Similarity=-0.089 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhcccCCC-ccC-CCCh----hhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 163 LKKLLHCLHWGLQKLSAFGQD-LET-SDDV----GENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 163 ~~~Y~~slYwa~~tltTvG~g-~~~-~~~~----~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
...+..|+||+++|+||+||| |+. +.+. +=..|++++++.|.++.+..+|-+.+
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~ 237 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVD 237 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999999999 763 3322 12788889999999999999998877
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=93.19 E-value=0.076 Score=48.91 Aligned_cols=50 Identities=14% Similarity=-0.009 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcccCCCccCC-----CChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036610 166 LLHCLHWGLQKLSAFGQDLETS-----DDVGENIFAIWMTIYGVVLFVFLIGRMQ 215 (447)
Q Consensus 166 Y~~slYwa~~tltTvG~g~~~~-----~~~~E~~f~i~~mi~G~~~fa~iiG~v~ 215 (447)
...|++|.++++|+.|++++-. +..+=..|..++++.+.++....+|-+.
T Consensus 166 ~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~ 220 (229)
T 4dxw_A 166 LGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILV 220 (229)
T ss_dssp HHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999876411 1111223333444455555555555543
No 78
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=79.16 E-value=9 Score=34.76 Aligned_cols=69 Identities=12% Similarity=0.199 Sum_probs=52.0
Q ss_pred cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCc
Q 036610 314 LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISN 393 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~ 393 (447)
+....+.||+.+=..-.+.+.+++|++|++++.. +|. ...+++||++=- + +..+
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i-------~~~------~~~l~~Gd~~~~-------p------~~~~ 92 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI-------ENN------KKTISNGDFLEI-------T------ANHN 92 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE-------SSC------EEEEETTEEEEE-------C------SSCC
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEE-------CCE------EEEECCCCEEEE-------C------CCCC
Confidence 4456789999988777789999999999999987 333 367899986421 1 1234
Q ss_pred cEEEEcceEEEEEEc
Q 036610 394 KTIQALTDVEAFTLI 408 (447)
Q Consensus 394 ~tv~Alt~~el~~L~ 408 (447)
..++|.+++.++.+.
T Consensus 93 H~~~a~~~~~~l~i~ 107 (227)
T 3rns_A 93 YSIEARDNLKLIEIG 107 (227)
T ss_dssp EEEEESSSEEEEEEE
T ss_pred EEEEECCCcEEEEEE
Confidence 678899999988773
No 79
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=78.63 E-value=9.5 Score=30.41 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=46.1
Q ss_pred cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCc
Q 036610 314 LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISN 393 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~ 393 (447)
+....+.||..+-.--.+.+++++|++|++++.. +|. ...+++||.+=-. +...
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-------~~~------~~~l~~Gd~i~ip-------------~~~~ 91 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV-------DGA------QRRLHQGDLLYLG-------------AGAA 91 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE-------TTE------EEEECTTEEEEEC-------------TTCC
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE-------CCE------EEEECCCCEEEEC-------------CCCc
Confidence 3445678898876665667899999999999887 332 3678999865321 1123
Q ss_pred cEEEEcceEEEEE
Q 036610 394 KTIQALTDVEAFT 406 (447)
Q Consensus 394 ~tv~Alt~~el~~ 406 (447)
.++++.++++++.
T Consensus 92 H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 92 HDVNAITNTSLLV 104 (114)
T ss_dssp EEEEESSSEEEEE
T ss_pred EEEEeCCCcEEEE
Confidence 5677778776544
No 80
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=76.85 E-value=3 Score=25.77 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 036610 419 RRNQAALFLQSYWRFREFLR 438 (447)
Q Consensus 419 ~~~~~~~~~q~~~~~~~~~~ 438 (447)
.+++++..||.+||.+...|
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr 23 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQR 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999543
No 81
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=75.91 E-value=15 Score=28.89 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=41.7
Q ss_pred EEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEE
Q 036610 317 VLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTI 396 (447)
Q Consensus 317 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv 396 (447)
..+.+|..+-.-..+.+++++|++|.+++.. +|. ...+++||.+=-. .+ .+..+
T Consensus 43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i-------~~~------~~~l~~Gd~i~i~----------~~---~~H~~ 96 (114)
T 2ozj_A 43 FSFADGESVSEEEYFGDTLYLILQGEAVITF-------DDQ------KIDLVPEDVLMVP----------AH---KIHAI 96 (114)
T ss_dssp EEEETTSSCCCBCCSSCEEEEEEEEEEEEEE-------TTE------EEEECTTCEEEEC----------TT---CCBEE
T ss_pred EEECCCCccccEECCCCeEEEEEeCEEEEEE-------CCE------EEEecCCCEEEEC----------CC---CcEEE
Confidence 3456777665445567899999999999877 332 3679999965311 11 22445
Q ss_pred EEcceEEEEEE
Q 036610 397 QALTDVEAFTL 407 (447)
Q Consensus 397 ~Alt~~el~~L 407 (447)
++.+++.++.+
T Consensus 97 ~~~~~~~~~~i 107 (114)
T 2ozj_A 97 AGKGRFKMLQI 107 (114)
T ss_dssp EEEEEEEEEEE
T ss_pred EeCCCcEEEEE
Confidence 56667766654
No 82
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=74.62 E-value=6.6 Score=31.93 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=32.6
Q ss_pred EEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 317 VLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 317 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
..+.||..+-.- ...+++++|++|++++.. +|. ...+++||.+-
T Consensus 45 ~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~-------~g~------~~~l~~GD~v~ 88 (119)
T 3lwc_A 45 GRYAPGQSLTET-MAVDDVMIVLEGRLSVST-------DGE------TVTAGPGEIVY 88 (119)
T ss_dssp EEECTTCEEEEE-CSSEEEEEEEEEEEEEEE-------TTE------EEEECTTCEEE
T ss_pred EEECCCCCcCcc-CCCCEEEEEEeCEEEEEE-------CCE------EEEECCCCEEE
Confidence 456788765433 378899999999999987 342 36799999753
No 83
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=73.52 E-value=8.9 Score=30.18 Aligned_cols=46 Identities=15% Similarity=0.071 Sum_probs=33.8
Q ss_pred EeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 315 KPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 315 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
-...+.||+.-.. ...+++++|++|++++.. .+|. ...+++||.+=
T Consensus 34 ~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i------~~g~------~~~l~~GD~i~ 79 (101)
T 1o5u_A 34 PIWEKEVSEFDWY--YDTNETCYILEGKVEVTT------EDGK------KYVIEKGDLVT 79 (101)
T ss_dssp CEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE------TTCC------EEEEETTCEEE
T ss_pred EEEEeCCCccccc--CCceEEEEEEeCEEEEEE------CCCC------EEEECCCCEEE
Confidence 3456778876554 457899999999999987 3343 36899999754
No 84
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=72.25 E-value=21 Score=27.82 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=43.2
Q ss_pred EeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCcc
Q 036610 315 KPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNK 394 (447)
Q Consensus 315 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~ 394 (447)
....+.||..+-.--....++++|++|.+++.. +|. ...+.+||.+=-. +....
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~-------~~~------~~~l~~Gd~~~ip-------------~~~~H 96 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI-------DQE------TYRVAEGQTIVMP-------------AGIPH 96 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE-------TTE------EEEEETTCEEEEC-------------TTSCE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEE-------CCE------EEEECCCCEEEEC-------------CCCCE
Confidence 445677887664333446799999999999877 332 3678999976321 11234
Q ss_pred EEEEcceEEEEEE
Q 036610 395 TIQALTDVEAFTL 407 (447)
Q Consensus 395 tv~Alt~~el~~L 407 (447)
..++.++++++.+
T Consensus 97 ~~~~~~~~~~~~v 109 (115)
T 1yhf_A 97 ALYAVEAFQMLLV 109 (115)
T ss_dssp EEEESSCEEEEEE
T ss_pred EEEECCCceEEEE
Confidence 5666667766654
No 85
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=71.11 E-value=4.1 Score=24.29 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036610 420 RNQAALFLQSYWRFREF 436 (447)
Q Consensus 420 ~~~~~~~~q~~~~~~~~ 436 (447)
+++++..||.+||.+..
T Consensus 5 Ee~aA~vIQrA~R~yl~ 21 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLL 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57899999999999984
No 86
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=69.67 E-value=3.3 Score=34.10 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=31.4
Q ss_pred EecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 318 LFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 318 ~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
...||..-.+..+ .+++++|++|++.+.. .+|. ...+++||.+-
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~------~~g~------~~~l~~GD~~~ 98 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVD------PDGT------VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEEC------TTCC------EEEEETTCEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEE------CCCe------EEEECCCCEEE
Confidence 4556666554332 3899999999999887 4443 36799999764
No 87
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=69.63 E-value=5 Score=32.84 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=32.2
Q ss_pred EecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 318 LFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 318 ~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
...||..-+.. +..++++.|++|.+.+.. .||. ...+++||.|-
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~------ddG~------~~~l~aGD~~~ 91 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQ------ADAD------PVKIGPGSIVS 91 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEE------TTCC------CEEECTTEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEe------CCCe------EEEECCCCEEE
Confidence 45666655554 334699999999999988 5554 36899999875
No 88
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=67.58 E-value=8.5 Score=30.84 Aligned_cols=48 Identities=17% Similarity=0.082 Sum_probs=33.2
Q ss_pred cEeEEecCCCeeEccCCC-cCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 314 LKPVLFIERTRIIRAGDP-IDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
+....+.||..+-.--.. ..++++|++|++++.. .+|. ...+++||.+
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~------~~~~------~~~l~~Gd~~ 89 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ------GNGI------VTHLKAGDIA 89 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC------STTC------EEEEETTEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE------CCCe------EEEeCCCCEE
Confidence 444567888876544444 3689999999999875 3443 3678999975
No 89
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=66.12 E-value=9.9 Score=29.45 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=33.4
Q ss_pred cEeEEecCCCeeEcc--CCC-cCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 314 LKPVLFIERTRIIRA--GDP-IDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 314 l~~~~~~~ge~I~~e--Gd~-~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
+....+.||..+-.. -.. ..++++|++|++++.. ++. ...+++||.+
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~-------~~~------~~~l~~Gd~~ 72 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV-------DGH------TQALQAGSLI 72 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE-------TTE------EEEECTTEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE-------CCE------EEEeCCCCEE
Confidence 344567888876543 334 6799999999999887 332 3678999875
No 90
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=66.08 E-value=26 Score=27.28 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=43.2
Q ss_pred cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCc
Q 036610 314 LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISN 393 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~ 393 (447)
+....+.||..+-.--....++++|++|.+++.. +|. ...+.+||.+=-. +...
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-------~~~------~~~l~~Gd~~~ip-------------~~~~ 89 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV-------DGV------IKVLTAGDSFFVP-------------PHVD 89 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE-------TTE------EEEECTTCEEEEC-------------TTCC
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE-------CCE------EEEeCCCCEEEEC-------------cCCc
Confidence 3445677887653333346789999999999887 332 3679999974321 1123
Q ss_pred cEEEEcceEEEEEE
Q 036610 394 KTIQALTDVEAFTL 407 (447)
Q Consensus 394 ~tv~Alt~~el~~L 407 (447)
..+++.++++++.+
T Consensus 90 H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 90 HGAVCPTGGILIDT 103 (116)
T ss_dssp EEEEESSCEEEEEE
T ss_pred eeeEeCCCcEEEEE
Confidence 45666667776665
No 91
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=64.77 E-value=12 Score=28.23 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=32.0
Q ss_pred EeEEecCCCeeEccCCC-cCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 315 KPVLFIERTRIIRAGDP-IDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 315 ~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
....+.||..+-.--.. .+++++|++|.+.+.. +|. ...+++||.+
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~-------~~~------~~~l~~Gd~~ 77 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV-------GEE------EALLAPGMAA 77 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE-------TTE------EEEECTTCEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE-------CCE------EEEeCCCCEE
Confidence 34567888876433333 3679999999999877 332 3678999975
No 92
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=64.76 E-value=10 Score=30.28 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=34.4
Q ss_pred cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 314 LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
+....+.||..+-.--....++++|++|.+++.. +|+ ...+++||.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-------~~~------~~~l~~Gd~~ 89 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI-------GEE------TRVLRPGMAY 89 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE-------TTE------EEEECTTEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE-------CCE------EEEeCCCCEE
Confidence 3445678888765444456899999999999887 332 3678999875
No 93
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=63.58 E-value=5.3 Score=30.80 Aligned_cols=49 Identities=12% Similarity=-0.009 Sum_probs=32.5
Q ss_pred EeEEecCCCeeE-ccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 315 KPVLFIERTRII-RAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 315 ~~~~~~~ge~I~-~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
....+.||...- +.-+..+++++|++|.+++.. .+|.+ ...+.+||.+=
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~------~~g~~-----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET------PEGSV-----TSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE------TTEEE-----EEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe------CCCCE-----EEEEcCCCEEE
Confidence 445678887652 332222459999999999887 44312 36799998764
No 94
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=59.79 E-value=11 Score=33.04 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=33.3
Q ss_pred cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 314 LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
+....+.||...-.--....+.++|++|++++.. .+|. ...|++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l------d~ge------~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL------DDGA------KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC------GGGC------EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEE------CCCe------EEEECCCCEE
Confidence 3445677877543323345578899999999987 3343 3689999998
No 95
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=58.68 E-value=12 Score=32.81 Aligned_cols=41 Identities=22% Similarity=0.465 Sum_probs=29.1
Q ss_pred eeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 324 RIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 324 ~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
..++ -++.++++++++|.+.+.. .|+++. ....+++||+|=
T Consensus 48 ~d~H-~h~~dE~FyvlkG~m~i~v------~d~g~~---~~v~l~eGE~f~ 88 (174)
T 1yfu_A 48 TDYH-DDPLEEFFYQLRGNAYLNL------WVDGRR---ERADLKEGDIFL 88 (174)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEE------EETTEE---EEEEECTTCEEE
T ss_pred ccCc-CCCCceEEEEEeeEEEEEE------EcCCce---eeEEECCCCEEE
Confidence 4444 3367899999999999988 453311 246899999774
No 96
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=58.25 E-value=17 Score=31.22 Aligned_cols=47 Identities=9% Similarity=-0.025 Sum_probs=33.7
Q ss_pred cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 314 LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
+....+.||..+-.--....++++|++|++++.. +|. ...+++||++
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i-------~~~------~~~l~~Gd~i 104 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL-------DDR------VEPLTPLDCV 104 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE-------TTE------EEEECTTCEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE-------CCE------EEEECCCCEE
Confidence 3445677887654434457899999999999887 332 3678999975
No 97
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=56.04 E-value=9 Score=33.56 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=40.1
Q ss_pred eeEccCCCcCeEEEEEeeEEEEEEeecccccCCC-ccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEEEEcceE
Q 036610 324 RIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTAS-NSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDV 402 (447)
Q Consensus 324 ~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~-~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~ 402 (447)
..++ -++.++++++++|.+.+.. .|++ ....+....+++||+|=- ++ +.+ .+-++-+++
T Consensus 47 ~D~H-~~~~eE~Fy~lkG~m~l~v------~d~g~~~~~~~dv~i~eGdmfll-------P~---gvp---HsP~r~~e~ 106 (176)
T 1zvf_A 47 TDYH-INPTPEWFYQKKGSMLLKV------VDETDAEPKFIDIIINEGDSYLL-------PG---NVP---HSPVRFADT 106 (176)
T ss_dssp SCEE-ECSSCEEEEEEESCEEEEE------EECSSSSCEEEEEEECTTEEEEE-------CT---TCC---EEEEECTTC
T ss_pred CcCc-CCCCceEEEEEeCEEEEEE------EcCCCcccceeeEEECCCCEEEc-------CC---CCC---cCCcccCCc
Confidence 4445 4567899999999999998 4422 000012468899997742 11 112 233345667
Q ss_pred EEEEEcHhh
Q 036610 403 EAFTLIADD 411 (447)
Q Consensus 403 el~~L~~~d 411 (447)
..+.+.+..
T Consensus 107 v~lviErkR 115 (176)
T 1zvf_A 107 VGIVVEQDR 115 (176)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecC
Confidence 666666544
No 98
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=55.93 E-value=10 Score=31.40 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=30.7
Q ss_pred EEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 317 VLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 317 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
..+.||+.-.+ ...+++++|++|++++.. +|. ...+++||.+-
T Consensus 62 ~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~-------~g~------~~~l~~GD~i~ 104 (133)
T 2pyt_A 62 MQWDNAFFPWT--LNYDEIDMVLEGELHVRH-------EGE------TMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEE--CSSEEEEEEEEEEEEEEE-------TTE------EEEEETTCEEE
T ss_pred EEECCCCcccc--CCCCEEEEEEECEEEEEE-------CCE------EEEECCCcEEE
Confidence 45677743233 247899999999999887 343 36899999764
No 99
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=55.89 E-value=13 Score=28.80 Aligned_cols=69 Identities=7% Similarity=0.075 Sum_probs=41.1
Q ss_pred ecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEEEE
Q 036610 319 FIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQA 398 (447)
Q Consensus 319 ~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~A 398 (447)
..+|+...+..+..+++++|++|.+++.. .+|+ ...+++||.+=-. + +. ....++
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~------~~~~------~~~l~~Gd~~~ip-------~---~~---~H~~~~ 89 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDF------ADGG------SMTIREGEMAVVP-------K---SV---SHRPRS 89 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEE------TTSC------EEEECTTEEEEEC-------T---TC---CEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEE------CCCc------EEEECCCCEEEEC-------C---CC---cEeeEe
Confidence 34565444444434899999999999887 3323 3679999975321 1 11 233444
Q ss_pred cceEEEEEEcHhhH
Q 036610 399 LTDVEAFTLIADDL 412 (447)
Q Consensus 399 lt~~el~~L~~~dl 412 (447)
.+++.++.++....
T Consensus 90 ~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 90 ENGCSLVLIELSDP 103 (107)
T ss_dssp EEEEEEEEEECC--
T ss_pred CCCeEEEEEECCCc
Confidence 56778777776554
No 100
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=55.86 E-value=19 Score=28.37 Aligned_cols=44 Identities=7% Similarity=0.192 Sum_probs=29.6
Q ss_pred EEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceee-ecCCCCee
Q 036610 317 VLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSREN-HLEDGDFF 373 (447)
Q Consensus 317 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~-~l~~Gd~F 373 (447)
..+.||..+-.--....++++|++|.+.+.. ++.. . .+.+||.+
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i-------~~~~------~~~l~~Gd~i 76 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL-------EDQE------PHNYKEGNIV 76 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE-------TTSC------CEEEETTCEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE-------CCEE------EEEeCCCCEE
Confidence 4556776542222346789999999999887 3332 4 78899975
No 101
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=54.52 E-value=13 Score=31.36 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=32.6
Q ss_pred EeEEecCCCe--eEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 315 KPVLFIERTR--IIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 315 ~~~~~~~ge~--I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
....+.||.. -.+.-...+++++|++|++++.. +|+ ...+++||.+
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~-------~~~------~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM-------END------QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE-------TTE------EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE-------CCE------EEEeCCCCEE
Confidence 3456788874 22333356899999999999887 332 3678999986
No 102
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=54.11 E-value=14 Score=31.64 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=32.7
Q ss_pred EeEEecCCCee--EccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 315 KPVLFIERTRI--IRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 315 ~~~~~~~ge~I--~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
....+.||... .+..+..+++++|++|++++.. +++ ...+++||.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~-------~~~------~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD-------DQG------EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE-------TTE------EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE-------CCE------EEEeCCCCEEE
Confidence 44567788854 2333334799999999999887 332 36788998753
No 103
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=53.51 E-value=24 Score=30.72 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=32.8
Q ss_pred EEecCCCeeE---ccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 317 VLFIERTRII---RAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 317 ~~~~~ge~I~---~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
..+.||...- .-..+.+++++|++|.+++.. .+++.. ....+++||.+=
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~------~~~~~~---~~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKW------GDKENP---KEALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEE------SCTTSC---EEEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEE------CCcCCc---ccEEECCCCEEE
Confidence 4567877654 223345799999999999988 342211 147899999763
No 104
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=53.10 E-value=20 Score=32.35 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=46.7
Q ss_pred cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCc
Q 036610 314 LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISN 393 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~ 393 (447)
+....+.||+.+-..-.+.+++++|++|++++.. +|. ...+.+||.+=-. . ..+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-------~g~------~~~l~~Gd~i~ip----------~---~~~ 208 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV-------DGK------PFIVKKGESAVLP----------A---NIP 208 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE-------TTE------EEEEETTEEEEEC----------T---TSC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE-------CCE------EEEECCCCEEEEC----------C---CCc
Confidence 4456789999876555667889999999999887 333 3678999864321 1 123
Q ss_pred cEEEE-cceEEEEEE
Q 036610 394 KTIQA-LTDVEAFTL 407 (447)
Q Consensus 394 ~tv~A-lt~~el~~L 407 (447)
..+.| .++++++..
T Consensus 209 H~~~~~~~~~~~ll~ 223 (227)
T 3rns_A 209 HAVEAETENFKMLLI 223 (227)
T ss_dssp EEEECCSSCEEEEEE
T ss_pred EEEEeCCCCEEEEEE
Confidence 56777 777766543
No 105
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=52.83 E-value=11 Score=32.73 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=35.4
Q ss_pred cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 314 LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
+....+.||...-.--..++++++|++|++++... ..+|++ ...+++||.+=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~----~~~~~~-----~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLV----NPDGRD-----TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEE----ETTEEE-----EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEE----eCCCcE-----EEEECCCCEEE
Confidence 44556788877644433468999999999998762 123322 46899999763
No 106
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=52.02 E-value=24 Score=32.01 Aligned_cols=46 Identities=15% Similarity=-0.013 Sum_probs=31.2
Q ss_pred EEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 317 VLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 317 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
..+.||..+=.=-.+.+++|+|++|.++... .+|. ...+++||.+=
T Consensus 137 v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v------~~g~------~~~l~pGd~v~ 182 (217)
T 4b29_A 137 GYWGPGLDYGWHEHLPEELYSVVSGRALFHL------RNAP------DLMLEPGQTRF 182 (217)
T ss_dssp EEECSSCEEEEEECSSEEEEEEEEECEEEEE------TTSC------CEEECTTCEEE
T ss_pred EEECCCCcCCCCCCCCceEEEEEeCCEEEEE------CCCC------EEecCCCCEEE
Confidence 3455554433223457899999999999988 3343 36889998753
No 107
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=51.27 E-value=11 Score=32.71 Aligned_cols=32 Identities=13% Similarity=0.006 Sum_probs=25.0
Q ss_pred CCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 330 DPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 330 d~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
..+.+++||++|.+++.. +|. ...+++||.|=
T Consensus 108 h~gEE~~yVLeG~v~vtl-------~g~------~~~L~~Gds~~ 139 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTV-------CKN------KFLSVKGSTFQ 139 (166)
T ss_dssp CSEEEEEEEEESEEEEEE-------TTE------EEEEETTCEEE
T ss_pred CCceEEEEEEEeEEEEEE-------CCE------EEEEcCCCEEE
Confidence 346789999999999998 332 36899999764
No 108
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=51.00 E-value=31 Score=25.96 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=36.7
Q ss_pred EccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEEE
Q 036610 326 IRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEAF 405 (447)
Q Consensus 326 ~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el~ 405 (447)
.+.-+...++++|++|.+.+.. +|. ...+.+||.+=- ++ .......+.+++.++
T Consensus 44 ~H~H~~~~e~~~v~~G~~~~~~-------~~~------~~~l~~Gd~~~i-------p~------~~~H~~~~~~~~~~l 97 (102)
T 3d82_A 44 WHEHADTDEVFIVMEGTLQIAF-------RDQ------NITLQAGEMYVI-------PK------GVEHKPMAKEECKIM 97 (102)
T ss_dssp CBCCTTCCEEEEEEESEEEEEC-------SSC------EEEEETTEEEEE-------CT------TCCBEEEEEEEEEEE
T ss_pred ceeCCCCcEEEEEEeCEEEEEE-------CCE------EEEEcCCCEEEE-------CC------CCeEeeEcCCCCEEE
Confidence 3443334899999999999876 333 367889986521 11 122445555788887
Q ss_pred EEcH
Q 036610 406 TLIA 409 (447)
Q Consensus 406 ~L~~ 409 (447)
.++.
T Consensus 98 ~i~~ 101 (102)
T 3d82_A 98 IIEP 101 (102)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7753
No 109
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=50.18 E-value=23 Score=28.01 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=29.6
Q ss_pred ecCCCeeEc---cCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 319 FIERTRIIR---AGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 319 ~~~ge~I~~---eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
..+|+.... -....+++++|++|.+++.. .++.. ...+++||.+-
T Consensus 37 ~~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~------~~~~~-----~~~l~~Gd~i~ 84 (112)
T 2opk_A 37 ISNGQASPPGFWYDSPQDEWVMVVSGSAGIEC------EGDTA-----PRVMRPGDWLH 84 (112)
T ss_dssp EESSCCCCTTCCBCCSSEEEEEEEESCEEEEE------TTCSS-----CEEECTTEEEE
T ss_pred EeCCccCCCCccccCCccEEEEEEeCeEEEEE------CCEEE-----EEEECCCCEEE
Confidence 455655433 23457799999999999987 33221 15789998753
No 110
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=50.03 E-value=15 Score=31.29 Aligned_cols=44 Identities=9% Similarity=0.051 Sum_probs=30.4
Q ss_pred EEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 317 VLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 317 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
..+.||..+-..-....++++|++|++++.. +|. ...+++||++
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v-------~g~------~~~l~~Gd~i 92 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV-------GET------ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE-------TTE------EEEEETTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE-------CCE------EEEeCCCCEE
Confidence 3456666543333446789999999999887 332 3678899975
No 111
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=49.59 E-value=24 Score=32.35 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=36.9
Q ss_pred ccEeEEecCCCeeEc-cCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 313 FLKPVLFIERTRIIR-AGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 313 ~l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
.+....+.||..+=. +-....+.++|++|++.+.. +|. ...+++||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~-------~~~------~~~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL-------EEN------YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE-------TTE------EEEEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE-------CCE------EEEcCCCCEEE
Confidence 456677899987764 44556789999999999887 332 36899999854
No 112
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=48.81 E-value=11 Score=37.43 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=36.1
Q ss_pred EeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 315 KPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 315 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
....+.||+.+-.--....++|||++|+-..+. .+|. ...+++||++=
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~------v~G~------~~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTI------VDGH------KVELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEE------ETTE------EEEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEE------ECCE------EEEEcCCCEEE
Confidence 667889999887655566789999999876655 3554 36788899764
No 113
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=48.63 E-value=23 Score=28.90 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=31.3
Q ss_pred eEEecCCCeeEccCCC-cCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 316 PVLFIERTRIIRAGDP-IDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 316 ~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
...+.||..+-.--.. ..++++|++|.+++.. +|. ...+++||.+
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i-------~~~------~~~l~~Gd~i 106 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD-------NGK------DVPIKAGDVC 106 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE-------TTE------EEEEETTEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE-------CCE------EEEeCCCcEE
Confidence 4567888765322223 4689999999999887 332 3678999875
No 114
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=48.46 E-value=31 Score=26.40 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=30.4
Q ss_pred eEEecCCCeeEccCCC-cCeE-EEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 316 PVLFIERTRIIRAGDP-IDEM-IFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 316 ~~~~~~ge~I~~eGd~-~~~m-yfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
...+.+|..+-.--.. ..++ ++|++|.+++.. .+|. ...+.+||.+
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~------~~~~------~~~l~~Gd~~ 84 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG------DGDA------VIPAPRGAVL 84 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC------GGGC------EEEECTTEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe------CCCE------EEEECCCCEE
Confidence 3456788766433223 2466 899999999876 3233 3678999865
No 115
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=47.97 E-value=15 Score=31.67 Aligned_cols=45 Identities=9% Similarity=-0.013 Sum_probs=30.9
Q ss_pred eEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 316 PVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 316 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
...+.||..+-.--....++++|++|++++.. +|+ ...+++||++
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v-------~g~------~~~l~~GD~i 101 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV-------GRA------VSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE-------TTE------EEEECTTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE-------CCE------EEEeCCCCEE
Confidence 34456666554333446789999999999876 332 3678999975
No 116
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=47.64 E-value=26 Score=27.93 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=31.2
Q ss_pred eEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 316 PVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 316 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
...+.||...-.--....++++|++|++++.. +|. ...+++||.+=
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i-------~~~------~~~l~~Gd~~~ 83 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI-------NDE------DFPVTKGDLII 83 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE-------TTE------EEEEETTCEEE
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE-------CCE------EEEECCCcEEE
Confidence 34566776443333356789999999999887 332 36788998753
No 117
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=47.54 E-value=20 Score=28.84 Aligned_cols=44 Identities=32% Similarity=0.420 Sum_probs=29.8
Q ss_pred EEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 317 VLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 317 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
..+.||...-.--....++++|++|.+++.. ++. ...+.+||.+
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i-------~~~------~~~l~~Gd~i 96 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK-------EQG------EETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEEC-------SSC------EEEEETTEEE
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEE-------CCE------EEEECCCCEE
Confidence 4456665543333346799999999999876 332 3678888875
No 118
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=47.45 E-value=16 Score=31.17 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=23.9
Q ss_pred CcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 331 PIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 331 ~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
..+++++|++|++++.. +|. ...+++||.+
T Consensus 83 ~~eE~~yVLeG~~~l~i-------~g~------~~~l~~GD~i 112 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII-------DGR------KVSASSGELI 112 (151)
T ss_dssp SSEEEEEEEEEEEEEEE-------TTE------EEEEETTCEE
T ss_pred CCcEEEEEEEeEEEEEE-------CCE------EEEEcCCCEE
Confidence 46789999999999886 343 3689999975
No 119
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=46.78 E-value=24 Score=28.18 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=30.0
Q ss_pred EeEEecCCCeeE--ccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 315 KPVLFIERTRII--RAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 315 ~~~~~~~ge~I~--~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
....+.||..+- +.-+....+|+|++|.+++.. +|. ...+++||.+
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i-------~~~------~~~l~~Gd~i 76 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI-------DGE------KIELQAGDWL 76 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE-------TTE------EEEEETTEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE-------CCE------EEEeCCCCEE
Confidence 345667877652 333333457779999999887 332 3678888865
No 120
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=46.25 E-value=32 Score=29.78 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=31.1
Q ss_pred EEecCCCeeEc--cCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 317 VLFIERTRIIR--AGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 317 ~~~~~ge~I~~--eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
..+.||...-. -.....++++|++|.+++.. +|. ...+.+||.+
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~-------~~~------~~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF-------DEQ------WHELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE-------TTE------EEEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE-------CCE------EEEeCCCCEE
Confidence 45678876542 12335799999999999887 332 3689999976
No 121
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=46.05 E-value=13 Score=31.34 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=38.4
Q ss_pred EccCCCcCeEEEEEeeEEEEEEeecccccCCCcc-ccceeeecCCCCeechhhhHhhcccCCCCCCCCccEEEEcceEEE
Q 036610 326 IRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNS-RRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALTDVEA 404 (447)
Q Consensus 326 ~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~-~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~~el 404 (447)
++.-+..|++|+|++|++.+.. .++... .......+++|+++=-- + . --.+-.|-++|.+
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~------rd~~~~~~~d~~V~l~~Ge~yvVP-------k-----G-veH~p~a~~e~~v 104 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILIT------AEKENDKFNIELTLMEKGKVYNVP-------A-----E-CWFYSITQKDTKM 104 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEE------EEEETTEEEEEEEECCTTCCEEEC-------T-----T-CEEEEEECTTCEE
T ss_pred hccCCCCCeEEEEEecEEEEEE------ecCcCCCCccceEEecCCCEEEeC-------C-----C-ccCcccCCCceEE
Confidence 4555678999999999999887 332100 00013678998876421 0 0 0123455666776
Q ss_pred EEEcHh
Q 036610 405 FTLIAD 410 (447)
Q Consensus 405 ~~L~~~ 410 (447)
+.+...
T Consensus 105 LLiEp~ 110 (140)
T 3d0j_A 105 MYVQDS 110 (140)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 666544
No 122
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=43.03 E-value=48 Score=27.49 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=32.1
Q ss_pred EeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 315 KPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 315 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
....+.||..+-.--....++++|++|.+.+.. ++.. ...+.+||.+=
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~-------~~~~-----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE-------RGKP-----ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEE-------TTSC-----CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEE-------CCEE-----EEEECCCCEEE
Confidence 345667877653333345789999999999887 3321 15788898763
No 123
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=43.02 E-value=21 Score=35.48 Aligned_cols=77 Identities=10% Similarity=0.014 Sum_probs=51.5
Q ss_pred EeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCcc
Q 036610 315 KPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNK 394 (447)
Q Consensus 315 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~ 394 (447)
....+.||+..-.--...+++|+|++|+..+.. +|. ...+++||+|=.-.- ...
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V-------~ge------~~~~~~GD~~~iP~g-------------~~H 350 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV-------GGK------RFDWSEHDIFCVPAW-------------TWH 350 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEE-------TTE------EEEECTTCEEEECTT-------------CCE
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE-------CCE------EEEEeCCCEEEECCC-------------CeE
Confidence 556788998877655667789999999986554 443 378999998754311 112
Q ss_pred EEEE---cceEEEEEEcHhhHHHHHh
Q 036610 395 TIQA---LTDVEAFTLIADDLKHVLS 417 (447)
Q Consensus 395 tv~A---lt~~el~~L~~~dl~~ll~ 417 (447)
.... -+++.++.++-..+..-+.
T Consensus 351 ~~~N~g~~e~~~ll~i~D~Pl~~~Lg 376 (394)
T 3bu7_A 351 EHCNTQERDDACLFSFNDFPVMEKLG 376 (394)
T ss_dssp EEEECCSSCCEEEEEEESHHHHHHTT
T ss_pred EeEeCCCCCCeEEEEeeCHHHHHHhh
Confidence 2333 3567788887766666555
No 124
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=42.83 E-value=23 Score=33.25 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=32.1
Q ss_pred eEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 316 PVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 316 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
...+.||.--=.....++++.+|++|++++.. .+|. ...|++||++=
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l------~~g~------~~~L~~Gds~y 120 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTN------TSSS------SKKLTVDSYAY 120 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC--------CC------CEEECTTEEEE
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEE------CCCc------EEEEcCCCEEE
Confidence 35567877542233446799999999999987 3243 36799998764
No 125
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=42.70 E-value=39 Score=30.87 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=32.0
Q ss_pred eEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 316 PVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 316 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
...+.||...-..- .+++++|++|++++.. +|. ...|++||++=
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~-------~~~------~~~l~~Gd~~~ 97 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV-------GGE------TRTLREYDYVY 97 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC-------SSC------EEEECTTEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE-------CCE------EEEECCCCEEE
Confidence 34678887654432 7789999999999887 343 36899999753
No 126
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=42.57 E-value=31 Score=31.36 Aligned_cols=46 Identities=9% Similarity=0.002 Sum_probs=34.1
Q ss_pred cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCe
Q 036610 314 LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDF 372 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~ 372 (447)
+....+.||..+-.--.+..++++|++|.+++.. +|. ...+.+||.
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~-------~~~------~~~l~~Gd~ 81 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV-------GDV------TRKMTALES 81 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE-------TTE------EEEEETTTC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE-------CCE------EEEECCCCE
Confidence 4445688888776555567899999999999887 332 367889983
No 127
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=41.25 E-value=38 Score=31.42 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=34.1
Q ss_pred cEeEEecCCCeeEc-cCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 314 LKPVLFIERTRIIR-AGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 314 l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
+....+.||..+-. .-....++++|++|++++.. +|. ...+++||++
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i-------~~~------~~~l~~GD~i 231 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL-------DNE------WYPVEKGDYI 231 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE-------TTE------EEEEETTCEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE-------CCE------EEEECCCCEE
Confidence 34456788887643 33456799999999999887 332 3678999975
No 128
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=40.92 E-value=10 Score=29.50 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=33.8
Q ss_pred cEeEEecCCCeeEccCCCcC-eEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 314 LKPVLFIERTRIIRAGDPID-EMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~-~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
.+...+.||+-+=..-.+.+ ..|+|.+|.+.+.. .||.. ....+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~------~d~~~----~~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA------PDGTR----SLAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC------TTSCE----ECCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe------CCCce----EEEEecCCcEE
Confidence 45567889988765555544 67888899999887 56543 13567888764
No 129
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=40.63 E-value=35 Score=31.95 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=37.6
Q ss_pred hccEeEEecCCCeeEc-cCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 312 EFLKPVLFIERTRIIR-AGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 312 ~~l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
..+....+.||..|-. +-..-.+.++|++|+..+.. ||. ...+++||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~-------~~~------~~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL-------NQD------WVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE-------TTE------EEEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE-------CCE------EEEeCCCCEEE
Confidence 3466678899999875 44445588999999999876 443 47899999863
No 130
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=39.66 E-value=26 Score=33.08 Aligned_cols=70 Identities=14% Similarity=0.248 Sum_probs=45.4
Q ss_pred ecCCC---eeEccCCCcCeEEEEEeeEEEEEEeecccccC-CCccccceeeecCCCCeechhhhHhhcccCCCCCCCCcc
Q 036610 319 FIERT---RIIRAGDPIDEMIFVLKGKLWTYASRNVTTTT-ASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNK 394 (447)
Q Consensus 319 ~~~ge---~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~d-g~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~ 394 (447)
.-.|+ ..++ -+..+++|++++|.+.+.. .| |+. ....+++|++|= +++ +. +.
T Consensus 36 ~vgGpN~R~d~H-~~~~dE~FyqlkG~m~l~~------~d~g~~----~~V~i~eGemfl-------lP~---gv---~H 91 (286)
T 2qnk_A 36 FIGGPNTRKDYH-IEEGEEVFYQLEGDMVLRV------LEQGKH----RDVVIRQGEIFL-------LPA---RV---PH 91 (286)
T ss_dssp EECSCBCCCCEE-ECSSCEEEEEEESCEEEEE------EETTEE----EEEEECTTEEEE-------ECT---TC---CE
T ss_pred EEeCCCcCccCc-CCCCCeEEEEEeCeEEEEE------EeCCce----eeEEECCCeEEE-------eCC---CC---Cc
Confidence 34556 6667 6778999999999999988 45 422 246789988763 211 11 23
Q ss_pred EEEEcceEEEEEEcHhhH
Q 036610 395 TIQALTDVEAFTLIADDL 412 (447)
Q Consensus 395 tv~Alt~~el~~L~~~dl 412 (447)
+=+|-++|..+.+.+..-
T Consensus 92 sP~r~~et~gLviE~~R~ 109 (286)
T 2qnk_A 92 SPQRFANTVGLVVERRRL 109 (286)
T ss_dssp EEEECTTCEEEEEEECCC
T ss_pred CCcccCCeEEEEEeecCC
Confidence 334566777777765443
No 131
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=38.50 E-value=29 Score=31.97 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=25.1
Q ss_pred cCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 332 IDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 332 ~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
.+++..|++|++.+.. .+|. ...+++||.|-
T Consensus 186 ~~E~~~ILeG~v~lt~------~~G~------~~~~~aGD~~~ 216 (238)
T 3myx_A 186 IHELMNLIEGRVVLSL------ENGS------SLTVNTGDTVF 216 (238)
T ss_dssp SCEEEEEEECCEEEEE------TTSC------EEEECTTCEEE
T ss_pred CCEEEEEEEeEEEEEe------CCCC------EEEECCCCEEE
Confidence 5789999999999987 5553 36899999765
No 132
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=37.94 E-value=60 Score=28.50 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=34.3
Q ss_pred cEeEEecCCCeeE-ccCCCcCeEEEEEeeEEEEEEeecccccCC----CccccceeeecCCCCeec
Q 036610 314 LKPVLFIERTRII-RAGDPIDEMIFVLKGKLWTYASRNVTTTTA----SNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 314 l~~~~~~~ge~I~-~eGd~~~~myfI~~G~v~v~~~~~~~~~dg----~~~~~~~~~~l~~Gd~FG 374 (447)
+....+.||...- +....++++++|++|++++.. .++ ++. ....+++||.+=
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~------~~~~~~~~~~---~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGI------LGSLDSGNKL---YSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEE------ECCGGGTTCE---EEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEE------EcCCCCCCeE---EEEEECCCCEEE
Confidence 4445678887653 333336799999999999876 332 220 146799999764
No 133
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=37.47 E-value=37 Score=28.51 Aligned_cols=54 Identities=19% Similarity=0.071 Sum_probs=32.3
Q ss_pred EeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCc--cccceeeecCCCCeec
Q 036610 315 KPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASN--SRRSRENHLEDGDFFG 374 (447)
Q Consensus 315 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~--~~~~~~~~l~~Gd~FG 374 (447)
....+.||..+-.--....++++|++|.+.+.. .++++ .+......+.+||++=
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~------~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLM------GSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEE------CCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEE------CCccccccCccEEEEeCCCCEEE
Confidence 344567777542222245689999999999887 33110 0000146789999753
No 134
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=37.41 E-value=4.9 Score=34.23 Aligned_cols=11 Identities=18% Similarity=0.147 Sum_probs=9.6
Q ss_pred eEeeeecCCcc
Q 036610 9 VVSKIAIPPIP 19 (447)
Q Consensus 9 ~~Dlla~lP~~ 19 (447)
++|++|.+|+.
T Consensus 87 iiDllailP~~ 97 (147)
T 2kyh_A 87 LYEIPALVPAG 97 (147)
T ss_dssp TTTHHHHCCHH
T ss_pred HHHHHHHHHHH
Confidence 57999999986
No 135
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=35.86 E-value=23 Score=34.80 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=35.6
Q ss_pred cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 314 LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
+....+.||+.+-.--...+++|||++|+-.... .||.+ ..+++||++=
T Consensus 105 a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~------vdG~~------~~~~~GD~v~ 153 (368)
T 3nw4_A 105 AAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTV------VNGDP------VRMSRGDLLL 153 (368)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEECSSCEEEEEE------ETTEE------EEEETTCEEE
T ss_pred EEEEEECCCCccCceecccceEEEEEecceEEEE------ECCEE------EEEeCCCEEE
Confidence 3446789999877655567899999999975344 35543 6788999864
No 136
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=34.56 E-value=49 Score=31.22 Aligned_cols=45 Identities=22% Similarity=0.131 Sum_probs=32.0
Q ss_pred eEEecCCCeeE-ccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 316 PVLFIERTRII-RAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 316 ~~~~~~ge~I~-~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
.....||...- +..+..+++++|++|++++.. +|. ...+++||++
T Consensus 50 ~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~-------~~~------~~~l~~Gd~~ 95 (337)
T 1y3t_A 50 LLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL-------DGE------RYLLISGDYA 95 (337)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESCEEEEE-------TTE------EEEECTTCEE
T ss_pred EEEeCCCCCCCceeCCCceEEEEEEECEEEEEE-------CCE------EEEECCCCEE
Confidence 34577887653 333337899999999999887 332 3678899865
No 137
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=33.83 E-value=41 Score=30.89 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=33.7
Q ss_pred cEeEEecCCCeeEc-cCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 314 LKPVLFIERTRIIR-AGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 314 l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
+....+.||..+-. .-...+++++|++|++++.. +|. ...+++||.+=
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i-------~~~------~~~l~~GD~i~ 229 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL-------DNN------WIPVKKGDYIF 229 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES-------SSC------EEEEETTCEEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEE-------CCE------EEEeCCCCEEE
Confidence 35567888886532 22245789999999999876 333 36789999753
No 138
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=33.20 E-value=30 Score=32.35 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=31.2
Q ss_pred eEEecCCCeeEc--cCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 316 PVLFIERTRIIR--AGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 316 ~~~~~~ge~I~~--eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
...+.||...-. -....+++++|++|++++.. +|. ...|++||++=
T Consensus 72 ~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v-------~g~------~~~L~~GD~i~ 119 (278)
T 1sq4_A 72 IVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL-------QGQ------VHAMQPGGYAF 119 (278)
T ss_dssp EEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE-------SSC------EEEECTTEEEE
T ss_pred EEEECCCCccCCCCcCCCceEEEEEEeCEEEEEE-------CCE------EEEECCCCEEE
Confidence 345667765511 12346789999999999987 333 36799998753
No 139
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=33.06 E-value=27 Score=33.98 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=33.6
Q ss_pred EeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 315 KPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 315 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
....+.||+..-.--....++++|++|+..+.. .+|. ...+++||+|=
T Consensus 103 ~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~------v~g~------~~~l~~GD~~~ 150 (354)
T 2d40_A 103 GLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTA------VDGE------RTPMNEGDFIL 150 (354)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEECSSCEEE------ETTE------EEECCTTCEEE
T ss_pred EEEEECCCCCcCCeecCcceEEEEEEEEEEEEE------ECCE------EEEEcCCCEEE
Confidence 445678888764333346799999999988744 3443 36799999864
No 140
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=32.81 E-value=67 Score=30.78 Aligned_cols=51 Identities=8% Similarity=0.065 Sum_probs=33.4
Q ss_pred EeEEecCCCeeEc-cCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 315 KPVLFIERTRIIR-AGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 315 ~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
....+.||...-. ....++++++|++|++++... ..+|.. ....+++||++
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~----~~~g~~----~~~~l~~GD~~ 106 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLT----SPEGKV----EIADVDKGGLW 106 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEE----CTTSCE----EEEEEETTEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEE----eCCCcE----EEEEEcCCCEE
Confidence 3455678876532 333378999999999998872 123322 14678999965
No 141
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=32.79 E-value=39 Score=27.12 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=23.3
Q ss_pred cCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 332 IDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 332 ~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
.+++++|++|.+++.. .++. ...+.+||.+
T Consensus 64 ~~E~~~vl~G~~~~~~------~~~~------~~~l~~Gd~~ 93 (134)
T 2o8q_A 64 GFQLFYVLRGWVEFEY------EDIG------AVMLEAGGSA 93 (134)
T ss_dssp SCEEEEEEESEEEEEE------TTTE------EEEEETTCEE
T ss_pred CcEEEEEEeCEEEEEE------CCcE------EEEecCCCEE
Confidence 4899999999999887 3322 3678999875
No 142
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=32.48 E-value=85 Score=30.75 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=56.8
Q ss_pred EeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCcc
Q 036610 315 KPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNK 394 (447)
Q Consensus 315 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~ 394 (447)
......||+..-.--.....+|.|.+|+-.+.. +|. ....++||.|---.. ...
T Consensus 282 ~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I-------~~~------~~~w~~gD~fvvP~w-------------~~h 335 (368)
T 3nw4_A 282 EFHRLRAGTETATRNEVGSTVFQVFEGAGAVVM-------NGE------TTKLEKGDMFVVPSW-------------VPW 335 (368)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEESCEEEEE-------TTE------EEEECTTCEEEECTT-------------CCE
T ss_pred heEEECCCCccCCeeccccEEEEEEeCcEEEEE-------CCE------EEEecCCCEEEECCC-------------CcE
Confidence 446778888776555667799999999998776 443 367899998753211 235
Q ss_pred EEEEcceEEEEEEcHhhHHHHHh
Q 036610 395 TIQALTDVEAFTLIADDLKHVLS 417 (447)
Q Consensus 395 tv~Alt~~el~~L~~~dl~~ll~ 417 (447)
+..+.+++.+|.++-..+.+-+.
T Consensus 336 ~~~n~~~a~Lf~~~D~Pl~~~LG 358 (368)
T 3nw4_A 336 SLQAETQFDLFRFSDAPIMEALS 358 (368)
T ss_dssp EEEESSSEEEEEEESHHHHHHTT
T ss_pred EEEeCCCEEEEEEeCHHHHHHhC
Confidence 66778999999999888877666
No 143
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=32.27 E-value=71 Score=26.50 Aligned_cols=51 Identities=8% Similarity=-0.103 Sum_probs=35.2
Q ss_pred cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeech
Q 036610 314 LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGK 375 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE 375 (447)
+....+.||..+-.-..+..+.++|++|+.+. .+|... .-..+++||++=.
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~--------~~g~~~---~~~~~~~Gd~~~~ 96 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV--------RGGKAA---GGDTAIAPGYGYE 96 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE--------TTCGGG---TSEEEESSEEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE--------cCCCEe---cceEeCCCEEEEE
Confidence 45577899988876666678889999999983 233221 0146788887654
No 144
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=31.99 E-value=27 Score=28.38 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=26.6
Q ss_pred EecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 318 LFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 318 ~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
.+.||..+-.--....++++|++|++++... .+| + ...+++||.+
T Consensus 45 ~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~-----~~~-~-----~~~l~~Gd~~ 89 (145)
T 3ht1_A 45 EVSPNGSTPPHFHEWEHEIYVLEGSMGLVLP-----DQG-R-----TEEVGPGEAI 89 (145)
T ss_dssp EEEEEEECCCEECSSCEEEEEEEECEEEEEG-----GGT-E-----EEEECTTCEE
T ss_pred EECCCCcCCCccCCCceEEEEEEeEEEEEEe-----ECC-E-----EEEECCCCEE
Confidence 3445543322122345667899999998820 133 2 3678999975
No 145
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=31.73 E-value=41 Score=30.56 Aligned_cols=46 Identities=4% Similarity=-0.081 Sum_probs=33.1
Q ss_pred eEEecC-CCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 316 PVLFIE-RTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 316 ~~~~~~-ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
...+.| |..+-.--.+..++++|++|.+++.. +|+ ...+.+||.+-
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i-------~~~------~~~l~~Gd~i~ 195 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV-------EGC------TVEMKFGTAYF 195 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEE-------TTE------EEEECTTCEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEE-------CCE------EEEECCCCEEE
Confidence 345788 77665444456789999999999887 332 35799999754
No 146
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=31.69 E-value=17 Score=24.37 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=17.3
Q ss_pred cccchhHHHHHhhcCHHHHHHHHHH
Q 036610 261 KHVDVHINSFLSDLSQDAANEVKRL 285 (447)
Q Consensus 261 ~~~d~~e~~il~~Lp~~Lr~ei~~~ 285 (447)
.|+| .++++.||.+++.||...
T Consensus 14 ~~VD---~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 14 EGVD---QEVFKQLPADIQEEILSG 35 (48)
T ss_dssp TTCC---GGGTTTSCHHHHHHHTTC
T ss_pred CCCC---HHHHHHCcHHHHHHHHhc
Confidence 4565 679999999999998543
No 147
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=31.51 E-value=68 Score=29.92 Aligned_cols=51 Identities=10% Similarity=-0.024 Sum_probs=38.6
Q ss_pred HhccEeEEecCCCeeE-ccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 311 CEFLKPVLFIERTRII-RAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 311 ~~~l~~~~~~~ge~I~-~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
...++...+.||..+= .+-....+-++|++|+..+.. ||. ...+++||+.=
T Consensus 185 d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l-------~~~------~~~V~~GD~i~ 236 (266)
T 4e2q_A 185 DFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRL-------GDN------WYPVQAGDVIW 236 (266)
T ss_dssp SEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEE-------TTE------EEEEETTCEEE
T ss_pred ceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEE-------CCE------EEEecCCCEEE
Confidence 3445667799999984 576777799999999998776 333 36788899753
No 148
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=31.06 E-value=87 Score=25.69 Aligned_cols=51 Identities=10% Similarity=-0.017 Sum_probs=30.6
Q ss_pred eEEecCCCeeEc-cCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 316 PVLFIERTRIIR-AGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 316 ~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
...+.||..+-. .-+..+++++|++|.+.+.. .+... .......+.+||.+
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i------~~~~~-~~~~~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQM------GHRQD-NLHFQEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEE------ESBTT-BCCEEEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEE------CCccc-cceeeEEECCCCEE
Confidence 345677775532 22235699999999999887 33220 00001578889864
No 149
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=30.96 E-value=47 Score=35.57 Aligned_cols=51 Identities=10% Similarity=0.196 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhcccCCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 036610 165 KLLHCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQI 216 (447)
Q Consensus 165 ~Y~~slYwa~~tltTvG~g~~~~~~~~E~~f~i~~mi~G~~~fa~iiG~v~~ 216 (447)
....++++++.+++..|.. ..+.+...+++.++.++++.++.+..-|++++
T Consensus 563 ~~~~~~~~~~~~l~~~g~~-~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s 613 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQGAD-ISPRSLSGRIVGGVWWFFTLIIISSYTANLAA 613 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCC-cCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999888854 45666789999999999999999998999887
No 150
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=29.97 E-value=34 Score=31.45 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=30.1
Q ss_pred EEecCCCeeEcc-C-CCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 317 VLFIERTRIIRA-G-DPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 317 ~~~~~ge~I~~e-G-d~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
..+.||...-.. . ...+++++|++|++++.. +|. ...|++||.+-
T Consensus 64 ~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~-------~~~------~~~L~~Gd~~~ 110 (261)
T 1rc6_A 64 VTLHQNGGNQQGFGGEGIETFLYVISGNITAKA-------EGK------TFALSEGGYLY 110 (261)
T ss_dssp EEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE-------TTE------EEEEETTEEEE
T ss_pred EEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE-------CCE------EEEECCCCEEE
Confidence 455666544322 1 225689999999999987 332 36789998764
No 151
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=29.21 E-value=49 Score=33.01 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=37.9
Q ss_pred hccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 312 EFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 312 ~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
..+....+.||..+-.--..++++++|++|+..+... .+++. ....+++||++
T Consensus 49 ~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v-----~~~~~----~~~~l~~GDv~ 101 (416)
T 1uij_A 49 YRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLV-----NNDDR----DSYNLHPGDAQ 101 (416)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEE-----CSSCE----EEEEECTTEEE
T ss_pred EEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEE-----ECCCC----eEEEecCCCEE
Confidence 3456677889887665555678999999999998762 22222 24789999986
No 152
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=28.86 E-value=54 Score=32.88 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=38.8
Q ss_pred hccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 312 EFLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 312 ~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
..+....+.||..+-.--..++++++|++|+..+... .+++. ....+++||++-
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v-----~~~~~----~~~~l~~GDv~~ 114 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLV-----NPDSR----DSYILEQGHAQK 114 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEE-----CSSCE----EEEEEETTEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEE-----eCCCC----EEEEeCCCCEEE
Confidence 3456678889988766655678999999999998772 22222 257889999863
No 153
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=28.69 E-value=65 Score=28.14 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=30.8
Q ss_pred ccccccccCCCHHHHHHHHhccEeEEecCCCeeEccCCCcCeEEE
Q 036610 293 KMQVNEFENWSEKSLGYLCEFLKPVLFIERTRIIRAGDPIDEMIF 337 (447)
Q Consensus 293 L~~vplF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myf 337 (447)
+=++|.|++++-.+..+.... .+||+|+|+-...+++-+
T Consensus 11 ~I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~lti 49 (178)
T 2xp1_A 11 FYKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVL 49 (178)
T ss_dssp GGGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEE
T ss_pred eccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEE
Confidence 447899999999888777666 259999999988776433
No 154
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=28.17 E-value=62 Score=31.23 Aligned_cols=69 Identities=12% Similarity=-0.013 Sum_probs=46.9
Q ss_pred CCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccEEEEcce
Q 036610 322 RTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKTIQALTD 401 (447)
Q Consensus 322 ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~tv~Alt~ 401 (447)
|+.+=.--.+.+++++|++|.+++.. +|.+ ...+++||.+==- . ..+.++.|.++
T Consensus 262 g~~~~~h~~~~~~~~~vleG~~~i~i-------~g~~-----~~~l~~Gd~~~iP----------a---g~~h~~~~~~~ 316 (350)
T 1juh_A 262 TVTVPTWSFPGACAFQVQEGRVVVQI-------GDYA-----ATELGSGDVAFIP----------G---GVEFKYYSEAY 316 (350)
T ss_dssp TSCCCCBCCSSCEEEEEEESCEEEEE-------TTSC-----CEEECTTCEEEEC----------T---TCCEEEEESSS
T ss_pred CCCCCcccCCCcEEEEEEeeEEEEEE-------CCeE-----EEEeCCCCEEEEC----------C---CCCEEEEecCC
Confidence 55555555678899999999999988 4422 3689999975311 1 12456777654
Q ss_pred -EEEEEEcH--hhHHHH
Q 036610 402 -VEAFTLIA--DDLKHV 415 (447)
Q Consensus 402 -~el~~L~~--~dl~~l 415 (447)
..++.+.+ +.++..
T Consensus 317 ~~~~l~~~~g~~g~~~~ 333 (350)
T 1juh_A 317 FSKVLFVSSGSDGLDQN 333 (350)
T ss_dssp SEEEEEEEESSSSHHHH
T ss_pred eEEEEEEecCccchhhe
Confidence 78888776 666655
No 155
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=28.16 E-value=80 Score=30.61 Aligned_cols=52 Identities=8% Similarity=0.027 Sum_probs=33.8
Q ss_pred cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 314 LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
+....+.||..+-.--.+..++++|++|++++... ..+|.. ....+++||++
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~----~~~g~~----~~~~l~~GD~~ 132 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIV----DEKGRS----FIDDVGEGDLW 132 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEE----CTTSCE----EEEEEETTEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEE----eCCCcE----EEEEeCCCCEE
Confidence 34456788886533223378999999999998872 112331 12478999975
No 156
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=27.83 E-value=8.2 Score=32.00 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=10.9
Q ss_pred ceeEeeeecCCcc
Q 036610 7 SRVVSKIAIPPIP 19 (447)
Q Consensus 7 ~F~~Dlla~lP~~ 19 (447)
|=++|++|.+|..
T Consensus 70 ~niiDllailp~~ 82 (132)
T 1ors_C 70 KTLYEIPALVPAG 82 (132)
T ss_dssp TCGGGTGGGSCHH
T ss_pred HHHHHHHHHHHHH
Confidence 5578999999985
No 157
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=26.82 E-value=53 Score=33.07 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=37.2
Q ss_pred ccEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 313 FLKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 313 ~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
.+....+.||..+-.--..++++++|++|++.+... .+++.. ...+++||++-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v----~~~~~~-----~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLV----NPDGRD-----TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEE----ETTEEE-----EEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEE----eCCCCE-----EEEecCCCEEE
Confidence 445567888877665555578999999999988762 123222 47889999864
No 158
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=25.71 E-value=1.1e+02 Score=29.31 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=35.1
Q ss_pred cEeEEecCCCeeEccCCC-cCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 314 LKPVLFIERTRIIRAGDP-IDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
+....+.||..+-..-.+ .+++++|++|++.+... ..+|.. ....+++||.|=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~----~~~g~~----~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVF----ASEGKA----SVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEE----CSTTCE----EEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEE----cCCCcE----EEEEECCCCEEE
Confidence 445677888876433333 48999999999998761 123331 136799999874
No 159
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=24.90 E-value=55 Score=30.06 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=27.5
Q ss_pred CCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 321 ERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 321 ~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
.|+.... .-+.+++.+|++|++.+.. +| + ...+++||.+-
T Consensus 55 ~g~~~v~-~~p~dE~~~VleG~~~lt~-------~g-~-----~~~~~~Gd~~~ 94 (238)
T 3myx_A 55 GTALSVE-AYPYTEMLVMHRGSVTLTS-------GT-D-----SVTLSTGESAV 94 (238)
T ss_dssp CSEEEES-SCSSEEEEEEEESEEEEEE-------TT-E-----EEEEETTCEEE
T ss_pred ccccccc-cCCCcEEEEEEEeEEEEEC-------CC-e-----EEEEcCCCEEE
Confidence 4444442 2356899999999999875 23 2 36788998763
No 160
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=24.57 E-value=1.1e+02 Score=31.33 Aligned_cols=60 Identities=12% Similarity=0.233 Sum_probs=38.8
Q ss_pred HHHHHhccEeEEecCCCeeEcc-CCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 307 LGYLCEFLKPVLFIERTRIIRA-GDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 307 l~~L~~~l~~~~~~~ge~I~~e-Gd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
+..+-..+....+.||..+-.- ...++++++|++|++.+... ..+|.+. ....+++||+|
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv----~~~G~~~---~~~~l~~GDv~ 427 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVV----DSNGNRV---YDEELQEGHVL 427 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEE----CTTSCEE---EEEEEETTCEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEE----eCCCCEE---EeEEEcCCcEE
Confidence 4444455666778888865422 22368999999999998772 1334331 13569999976
No 161
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=24.45 E-value=1.2e+02 Score=30.79 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=39.0
Q ss_pred HHHHHhccEeEEecCCCeeEc-cCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 307 LGYLCEFLKPVLFIERTRIIR-AGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 307 l~~L~~~l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
+..+-..+....+.||..+-. -...++++++|++|.+.+... ..+|.+ . ....+++||+|=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~----~~~g~~--~-~~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV----NAQGNA--V-FDGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEE----CTTSCE--E-EEEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEE----cCCCCE--E-EeEEEcCCCEEE
Confidence 445445566677888875532 223368999999999998872 122332 1 125699999763
No 162
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=23.77 E-value=50 Score=30.59 Aligned_cols=45 Identities=22% Similarity=0.432 Sum_probs=29.8
Q ss_pred EEecCCCeeEcc-C-CCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 317 VLFIERTRIIRA-G-DPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 317 ~~~~~ge~I~~e-G-d~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
..+.||...-.. . ...+++++|++|++++.. +|. ...|++||.+=
T Consensus 67 ~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~-------~~~------~~~L~~GD~~~ 113 (274)
T 1sef_A 67 ATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD-------GQE------THELEAGGYAY 113 (274)
T ss_dssp EEEEEEEEECSCSSBTTEEEEEEEEESEEEEEC-------SSC------EEEEETTEEEE
T ss_pred EEECCCCcCCCCCCCCCceEEEEEEEeEEEEEE-------CCE------EEEECCCCEEE
Confidence 455666544322 1 225689999999999887 333 36789999764
No 163
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=23.67 E-value=2.1e+02 Score=27.45 Aligned_cols=76 Identities=13% Similarity=0.069 Sum_probs=50.4
Q ss_pred eEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeechhhhHhhcccCCCCCCCCccE
Q 036610 316 PVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFGKELIAWAQDESSSNLPISNKT 395 (447)
Q Consensus 316 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FGE~~l~~~l~~~~~~~~~~~~t 395 (447)
...+.||..--.--.+..++|+|++|+.++.. +| + ...+++||.|=--. -....
T Consensus 272 ~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v-------~~-~-----~~~~~~GD~~~vP~-------------~~~H~ 325 (354)
T 2d40_A 272 LQLLPKGFASRVARTTDSTIYHVVEGSGQVII-------GN-E-----TFSFSAKDIFVVPT-------------WHGVS 325 (354)
T ss_dssp EEEECTTCBCCCBEESSCEEEEEEEEEEEEEE-------TT-E-----EEEEETTCEEEECT-------------TCCEE
T ss_pred EEEECCCCCCCceecCCcEEEEEEeCeEEEEE-------CC-E-----EEEEcCCCEEEECC-------------CCeEE
Confidence 45777877654444456689999999999887 33 2 36789999864321 11244
Q ss_pred EEEcceEEEEEEcHhhHHHHHh
Q 036610 396 IQALTDVEAFTLIADDLKHVLS 417 (447)
Q Consensus 396 v~Alt~~el~~L~~~dl~~ll~ 417 (447)
+.+.+++.++.++-..+.+-+.
T Consensus 326 ~~n~e~~~l~~~~d~p~~~~lg 347 (354)
T 2d40_A 326 FQTTQDSVLFSFSDRPVQEALG 347 (354)
T ss_dssp EEEEEEEEEEEEESHHHHHHTT
T ss_pred EEeCCCEEEEEEcCHHHHHHhC
Confidence 5556888888887666655444
No 164
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=22.94 E-value=1.4e+02 Score=30.67 Aligned_cols=61 Identities=11% Similarity=0.212 Sum_probs=40.7
Q ss_pred HHHHHHhccEeEEecCCCeeEcc-CCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 306 SLGYLCEFLKPVLFIERTRIIRA-GDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 306 ~l~~L~~~l~~~~~~~ge~I~~e-Gd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
.+..+-..+....+.||-++--- .-.++++.+|++|.+.+... ..+|.+ . ....+.+||+|
T Consensus 388 ~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V----~~~G~~--v-~~~~L~~GDV~ 449 (531)
T 3fz3_A 388 ILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVV----NENGDA--I-LDQEVQQGQLF 449 (531)
T ss_dssp HHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEE----CTTSCE--E-EEEEEETTCEE
T ss_pred ccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEE----eCCCcE--E-EEEEecCCeEE
Confidence 44545445666788888876422 23378999999999998872 234432 1 24689999976
No 165
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=22.68 E-value=92 Score=30.16 Aligned_cols=53 Identities=15% Similarity=0.024 Sum_probs=35.0
Q ss_pred cEeEEecCCCeeEccCCCc-CeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCeec
Q 036610 314 LKPVLFIERTRIIRAGDPI-DEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFFG 374 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~-~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~FG 374 (447)
+....+.||...-..-.+. +++++|++|++++... ..+|.. ....+++||.+=
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~----~~~g~~----~~~~l~~GD~~~ 312 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVF----ASDGHA----RTFNYQAGDVGY 312 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEE----EETTEE----EEEEEESSCEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEE----cCCCcE----EEEEEcCCCEEE
Confidence 3445678888765333344 8999999999998761 023321 146789999764
No 166
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=22.56 E-value=2.1e+02 Score=24.91 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=27.2
Q ss_pred ccEeEEecCCCeeEccCCCcCeEEEEEeeEEE
Q 036610 313 FLKPVLFIERTRIIRAGDPIDEMIFVLKGKLW 344 (447)
Q Consensus 313 ~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~ 344 (447)
.+....+.||..+-.-...+.++.+|++|..+
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~ 157 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR 157 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE
Confidence 44567889999998888889999999999854
No 167
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=21.25 E-value=1.3e+02 Score=30.48 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=35.9
Q ss_pred hccEeEEecCCCeeEccC-CCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 312 EFLKPVLFIERTRIIRAG-DPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 312 ~~l~~~~~~~ge~I~~eG-d~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
..+....+.||..+-.== ..++++++|++|++.+... ..+|.+. ....+++||+|
T Consensus 338 is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~----~~~G~~~---~~~~l~~GDv~ 393 (476)
T 1fxz_A 338 LSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVV----NCNGERV---FDGELQEGRVL 393 (476)
T ss_dssp CCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEE----CTTSCEE---EEEEEETTCEE
T ss_pred ceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEE----ecCCCEE---eeeEEcCCCEE
Confidence 345667788888654222 2368999999999998772 1234321 13468999976
No 168
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=20.89 E-value=93 Score=31.00 Aligned_cols=51 Identities=10% Similarity=0.214 Sum_probs=36.6
Q ss_pred cEeEEecCCCeeEccCCCcCeEEEEEeeEEEEEEeecccccCCCccccceeeecCCCCee
Q 036610 314 LKPVLFIERTRIIRAGDPIDEMIFVLKGKLWTYASRNVTTTTASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 314 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~~~~dg~~~~~~~~~~l~~Gd~F 373 (447)
+....+.||.++.-.--.++++++|++|+..+... ..++. ....+.+||+|
T Consensus 46 l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V-----~~~~~----~~~~l~~GDv~ 96 (418)
T 3s7i_A 46 IVQIEAKPNTLVLPKHADADNILVIQQGQATVTVA-----NGNNR----KSFNLDEGHAL 96 (418)
T ss_dssp EEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEE-----CSSCE----EEEEEETTEEE
T ss_pred EEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEE-----ecCCE----EEEEecCCCEE
Confidence 33456678888776655688999999999988773 22332 35789999987
No 169
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=20.06 E-value=1.3e+02 Score=28.90 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=29.6
Q ss_pred ecCCCee---EccCCCcCeEEEEEeeEEEEEEeeccccc-CCCccccceeeecCCCCee
Q 036610 319 FIERTRI---IRAGDPIDEMIFVLKGKLWTYASRNVTTT-TASNSRRSRENHLEDGDFF 373 (447)
Q Consensus 319 ~~~ge~I---~~eGd~~~~myfI~~G~v~v~~~~~~~~~-dg~~~~~~~~~~l~~Gd~F 373 (447)
.++|... .+.-...+++++|++|++++... . +|.. ....+++||++
T Consensus 55 ~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~-----~~~g~~----~~~~L~~GD~v 104 (350)
T 1juh_A 55 APHSDALGVLPHIHQKHYENFYCNKGSFQLWAQ-----SGNETQ----QTRVLSSGDYG 104 (350)
T ss_dssp ECCCSSCSSCCEECSSCEEEEEEEESEEEEEEE-----ETTSCC----EEEEEETTCEE
T ss_pred cCCCCCCCCccccCCCceEEEEEEEEEEEEEEC-----CcCCce----EEEEECCCCEE
Confidence 3444444 33344467999999999999872 1 2221 24689999974
Done!