AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>036612
MLDGNESLEDKNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLN
YDYSKSFTKVDEGNLGWKYRPLEESIHDSDKNYEESGILHKE
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with CRL2 CRL2 CRL2 AT2G33600	protein from Arabidopsis thaliana	5.8e-18
BLAST match view associations BLAST with CRL1 CRL1 CRL1 AT2G33590	protein from Arabidopsis thaliana	5.3e-16
BLAST match view associations BLAST with AT1G76470 AT1G76470 AT1G76470	protein from Arabidopsis thaliana	1.3e-15
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036612
        (102 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2051018 - symbol:CRL2 "CCR(Cinnamoyl coA:NADP ...   218  5.8e-18   1
TAIR|locus:2051008 - symbol:CRL1 "CCR(Cinnamoyl coA:NADP ...   201  5.3e-16   1
TAIR|locus:2011741 - symbol:AT1G76470 species:3702 "Arabi...   198  1.3e-15   1


>TAIR|locus:2051018 [details] [associations]
            symbol:CRL2 "CCR(Cinnamoyl coA:NADP oxidoreductase)-like
            2" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0009809 "lignin biosynthetic process"
            evidence=ISS] [GO:0016621 "cinnamoyl-CoA reductase activity"
            evidence=ISS] [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
            InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040 GO:GO:0003824
            EMBL:CP002685 GenomeReviews:CT485783_GR eggNOG:COG0451
            GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0044237
            HOGENOM:HOG000167998 EMBL:AC002332 ProtClustDB:CLSN2683499
            EMBL:AY093143 EMBL:BT008718 IPI:IPI00521551 PIR:E84747
            RefSeq:NP_180918.1 UniGene:At.42953 ProteinModelPortal:O22810
            SMR:O22810 PaxDb:O22810 PRIDE:O22810 EnsemblPlants:AT2G33600.1
            GeneID:817926 KEGG:ath:AT2G33600 TAIR:At2g33600 InParanoid:O22810
            OMA:EIDIGEH PhylomeDB:O22810 ArrayExpress:O22810
            Genevestigator:O22810 Uniprot:O22810
        Length = 321

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 45/106 (42%), Positives = 68/106 (64%)

Query:     3 DGNESLEDKNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYD 62
             +G ES  ++ R LVD+RDVA  +L+VYEK EA+ RYIC    +R Q +A K+K ++LNY+
Sbjct:   215 EGYESRNNQERHLVDVRDVAQALLLVYEKAEAEGRYICIGHTVREQEVAEKLKSLYLNYN 274

Query:    63 YSKSFTKVDEG---------NLGWKYRPLEESIHDSDKNYEESGIL 99
             Y K + + D            LGW YRPLEE++ DS ++Y ++ ++
Sbjct:   275 YPKRYIEADGKVKVSSEKLQKLGWTYRPLEETLVDSVESYRKAKLV 320


>TAIR|locus:2051008 [details] [associations]
            symbol:CRL1 "CCR(Cinnamoyl coA:NADP oxidoreductase)-like
            1" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0009809 "lignin biosynthetic process" evidence=ISS] [GO:0016621
            "cinnamoyl-CoA reductase activity" evidence=ISS] [GO:0050662
            "coenzyme binding" evidence=IEA] [GO:0009408 "response to heat"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009737 "response to abscisic acid stimulus"
            evidence=IEP] [GO:0046686 "response to cadmium ion" evidence=IEP]
            InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040 GO:GO:0046686
            GO:GO:0003824 EMBL:CP002685 GenomeReviews:CT485783_GR
            eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
            GO:GO:0044237 HOGENOM:HOG000167998 EMBL:AC002332 EMBL:AY120714
            EMBL:AY084584 EMBL:BT000055 IPI:IPI00536249 PIR:D84747
            RefSeq:NP_180917.1 UniGene:At.19951 ProteinModelPortal:O22809
            SMR:O22809 STRING:O22809 PaxDb:O22809 PRIDE:O22809
            EnsemblPlants:AT2G33590.1 GeneID:817925 KEGG:ath:AT2G33590
            TAIR:At2g33590 InParanoid:O22809 OMA:DEACWSD PhylomeDB:O22809
            ProtClustDB:CLSN2683499 ArrayExpress:O22809 Genevestigator:O22809
            Uniprot:O22809
        Length = 321

 Score = 201 (75.8 bits), Expect = 5.3e-16, P = 5.3e-16
 Identities = 40/106 (37%), Positives = 68/106 (64%)

Query:     3 DGNESLEDKNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYD 62
             +G E+ +++ R LVD+RDVA  +L+VYEK EA+ RYICTS  ++ + +  K+K  + +Y+
Sbjct:   215 EGFETRDNQERHLVDVRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVEKLKSFYPHYN 274

Query:    63 YSKSFTKVDEG---------NLGWKYRPLEESIHDSDKNYEESGIL 99
             Y K +   ++           LGW YRPLEE++ DS ++Y ++ ++
Sbjct:   275 YPKKYIDAEDRVKVSSEKLQKLGWTYRPLEETLVDSVESYRKAKLV 320


>TAIR|locus:2011741 [details] [associations]
            symbol:AT1G76470 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
            "catalytic activity" evidence=IEA] [GO:0009809 "lignin biosynthetic
            process" evidence=ISS] [GO:0016621 "cinnamoyl-CoA reductase
            activity" evidence=ISS] [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
            InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040 EMBL:CP002684
            GO:GO:0003824 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
            GO:GO:0044237 IPI:IPI00541180 RefSeq:NP_177773.2 UniGene:At.27517
            ProteinModelPortal:F4I2E5 SMR:F4I2E5 PRIDE:F4I2E5
            EnsemblPlants:AT1G76470.1 GeneID:843980 KEGG:ath:AT1G76470
            OMA:HICAPHV Uniprot:F4I2E5
        Length = 325

 Score = 198 (74.8 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 48/109 (44%), Positives = 66/109 (60%)

Query:     4 GNESLEDKNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYDY 63
             G +SL      LVD+RDVAD +L+VYE  EA  RYIC S ++   +L  K+K M+   ++
Sbjct:   216 GIKSLLSDELYLVDVRDVADALLLVYENREATGRYICNSHSLYTDSLMEKLKNMYPKRNF 275

Query:    64 SKSFTKVDEG-----------NLGWKYRPLEESIHDSDKNYEESGILHK 101
              +SFT+V E            NLGWK+RPLEE+I DS  ++E +G L K
Sbjct:   276 PESFTEVKEKEVRPLSAEKLKNLGWKFRPLEETIDDSVVSFEAAGDLPK 324


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.136   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      102       102   0.00091  102 3  11 22  0.43    30
                                                     29  0.48    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.70u 0.18s 10.88t   Elapsed:  00:00:01
  Total cpu time:  10.70u 0.18s 10.88t   Elapsed:  00:00:01
  Start:  Thu May  9 21:37:03 2013   End:  Thu May  9 21:37:04 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
