Query 036612
Match_columns 102
No_of_seqs 175 out of 1008
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1502 Flavonol reductase/cin 99.8 3.9E-20 8.4E-25 127.8 10.1 100 1-100 214-327 (327)
2 PLN02214 cinnamoyl-CoA reducta 99.8 3.2E-19 6.9E-24 124.5 10.8 99 3-101 213-324 (342)
3 PLN02986 cinnamyl-alcohol dehy 99.7 1.8E-17 3.9E-22 114.4 10.2 92 8-99 219-322 (322)
4 PLN02662 cinnamyl-alcohol dehy 99.7 1.4E-16 3.1E-21 109.5 10.6 93 7-99 217-321 (322)
5 PLN00198 anthocyanidin reducta 99.7 8.3E-16 1.8E-20 106.8 10.1 90 11-100 236-337 (338)
6 PLN02650 dihydroflavonol-4-red 99.7 8.7E-16 1.9E-20 107.3 9.7 91 11-101 224-327 (351)
7 PLN02989 cinnamyl-alcohol dehy 99.7 1.2E-15 2.5E-20 105.4 10.2 89 10-98 222-324 (325)
8 PLN02896 cinnamyl-alcohol dehy 99.6 9.3E-15 2E-19 102.2 9.5 90 12-101 245-347 (353)
9 COG1087 GalE UDP-glucose 4-epi 99.5 3E-14 6.5E-19 97.5 6.1 86 10-95 219-323 (329)
10 TIGR03466 HpnA hopanoid-associ 99.5 2.8E-13 6.1E-18 93.1 9.2 96 4-99 193-328 (328)
11 COG1088 RfbB dTDP-D-glucose 4, 99.5 4.4E-13 9.5E-18 91.8 8.2 89 10-98 213-321 (340)
12 PLN02427 UDP-apiose/xylose syn 99.4 4.6E-13 1E-17 94.7 7.8 87 10-96 254-371 (386)
13 PLN02653 GDP-mannose 4,6-dehyd 99.4 7.4E-13 1.6E-17 92.1 8.3 86 10-96 227-331 (340)
14 TIGR01472 gmd GDP-mannose 4,6- 99.4 6.4E-13 1.4E-17 92.6 8.0 85 10-95 221-341 (343)
15 PRK15181 Vi polysaccharide bio 99.4 8.4E-13 1.8E-17 92.4 8.2 87 10-96 230-340 (348)
16 PRK10217 dTDP-glucose 4,6-dehy 99.4 7.7E-13 1.7E-17 92.4 7.9 87 10-96 221-334 (355)
17 PLN00016 RNA-binding protein; 99.4 1.1E-12 2.3E-17 92.8 8.1 93 10-102 241-359 (378)
18 PLN02240 UDP-glucose 4-epimera 99.4 1.4E-12 3E-17 90.8 7.7 89 10-98 235-343 (352)
19 TIGR02622 CDP_4_6_dhtase CDP-g 99.4 2.7E-12 5.8E-17 89.7 8.0 87 10-96 220-331 (349)
20 PRK10675 UDP-galactose-4-epime 99.4 2.7E-12 5.9E-17 88.9 7.4 86 11-96 229-332 (338)
21 TIGR01181 dTDP_gluc_dehyt dTDP 99.4 4.8E-12 1E-16 86.4 8.5 88 11-98 212-315 (317)
22 PLN02206 UDP-glucuronate decar 99.3 4.9E-12 1.1E-16 91.4 8.1 85 11-96 326-425 (442)
23 PRK11908 NAD-dependent epimera 99.3 4.2E-12 9.2E-17 88.6 7.4 87 10-96 218-338 (347)
24 PLN02166 dTDP-glucose 4,6-dehy 99.3 6E-12 1.3E-16 90.8 7.9 85 11-96 327-426 (436)
25 PRK10084 dTDP-glucose 4,6 dehy 99.3 5.3E-12 1.2E-16 88.1 7.3 87 10-96 228-337 (352)
26 PRK08125 bifunctional UDP-gluc 99.3 5.9E-12 1.3E-16 94.7 7.9 91 10-100 532-656 (660)
27 KOG0747 Putative NAD+-dependen 99.3 1.1E-11 2.5E-16 84.4 7.9 87 10-96 218-325 (331)
28 PLN02725 GDP-4-keto-6-deoxyman 99.3 2.2E-11 4.7E-16 83.2 8.1 87 10-96 200-300 (306)
29 TIGR02197 heptose_epim ADP-L-g 99.3 2.4E-11 5.3E-16 83.2 8.2 83 11-94 212-313 (314)
30 PLN02572 UDP-sulfoquinovose sy 99.3 1.8E-11 3.9E-16 88.4 7.2 87 10-96 306-416 (442)
31 PRK11150 rfaD ADP-L-glycero-D- 99.3 2.3E-11 5E-16 83.5 7.3 83 11-94 207-307 (308)
32 PLN02260 probable rhamnose bio 99.2 4.6E-11 9.9E-16 89.9 8.8 88 10-97 220-323 (668)
33 PLN02583 cinnamoyl-CoA reducta 99.2 3.6E-11 7.8E-16 82.6 7.4 63 3-65 207-270 (297)
34 PLN02695 GDP-D-mannose-3',5'-e 99.2 4.9E-11 1.1E-15 84.4 8.1 86 10-96 233-332 (370)
35 TIGR01179 galE UDP-glucose-4-e 99.2 8.1E-11 1.8E-15 80.6 6.9 85 11-95 224-327 (328)
36 KOG1429 dTDP-glucose 4-6-dehyd 99.2 8.9E-11 1.9E-15 80.3 6.6 85 10-95 233-332 (350)
37 PRK05865 hypothetical protein; 99.2 1.2E-10 2.5E-15 89.6 7.7 86 11-96 153-259 (854)
38 TIGR01214 rmlD dTDP-4-dehydror 99.1 3.8E-10 8.3E-15 76.6 8.0 85 8-92 176-286 (287)
39 KOG1431 GDP-L-fucose synthetas 99.1 4.2E-10 9E-15 75.1 5.5 87 10-96 206-309 (315)
40 COG0451 WcaG Nucleoside-diphos 99.0 3.7E-09 8E-14 72.2 8.3 87 10-97 207-312 (314)
41 KOG1371 UDP-glucose 4-epimeras 99.0 1.3E-09 2.8E-14 75.6 5.9 88 10-97 231-336 (343)
42 COG1090 Predicted nucleoside-d 98.9 8.7E-09 1.9E-13 70.2 7.2 83 9-91 189-295 (297)
43 TIGR01777 yfcH conserved hypot 98.8 6.5E-09 1.4E-13 70.4 5.7 77 10-86 192-292 (292)
44 TIGR03589 PseB UDP-N-acetylglu 98.8 4.8E-09 1.1E-13 72.9 3.9 79 10-88 196-285 (324)
45 PLN02686 cinnamoyl-CoA reducta 98.8 2.2E-08 4.9E-13 70.8 6.9 58 2-59 264-324 (367)
46 PRK09987 dTDP-4-dehydrorhamnos 98.6 1.8E-07 3.8E-12 64.4 6.7 82 13-94 188-294 (299)
47 KOG3019 Predicted nucleoside-d 98.4 1.5E-06 3.2E-11 58.4 5.9 81 9-89 208-313 (315)
48 CHL00194 ycf39 Ycf39; Provisio 98.3 1.7E-06 3.8E-11 59.9 5.8 50 10-59 171-222 (317)
49 PF04321 RmlD_sub_bind: RmlD s 98.3 9.2E-07 2E-11 60.8 3.6 86 8-93 176-285 (286)
50 COG1089 Gmd GDP-D-mannose dehy 98.2 7E-06 1.5E-10 56.7 7.0 86 9-95 219-340 (345)
51 TIGR03649 ergot_EASG ergot alk 98.2 6.8E-06 1.5E-10 55.9 6.1 51 9-59 162-214 (285)
52 PF01073 3Beta_HSD: 3-beta hyd 98.2 7.9E-06 1.7E-10 56.1 6.4 50 10-59 210-269 (280)
53 PLN02996 fatty acyl-CoA reduct 98.0 1.3E-05 2.9E-10 58.9 4.9 52 10-61 302-360 (491)
54 PLN02778 3,5-epimerase/4-reduc 97.8 5E-05 1.1E-09 52.5 5.7 46 13-59 192-238 (298)
55 PRK12320 hypothetical protein; 97.8 6.1E-05 1.3E-09 57.7 6.4 77 12-89 157-245 (699)
56 PRK07201 short chain dehydroge 97.8 6.2E-05 1.3E-09 56.7 5.8 50 10-59 217-268 (657)
57 KOG1372 GDP-mannose 4,6 dehydr 97.7 0.00021 4.5E-09 48.9 7.2 83 10-93 249-366 (376)
58 TIGR01746 Thioester-redct thio 97.7 0.00013 2.8E-09 50.6 6.3 46 11-56 228-277 (367)
59 COG1091 RfbD dTDP-4-dehydrorha 97.6 0.00046 1E-08 47.6 7.4 85 8-92 175-279 (281)
60 PF01370 Epimerase: NAD depend 97.6 4.7E-05 1E-09 49.9 2.4 33 9-41 203-236 (236)
61 PLN02657 3,8-divinyl protochlo 97.6 0.00017 3.8E-09 51.6 5.2 46 14-59 249-297 (390)
62 PF13950 Epimerase_Csub: UDP-g 97.5 8.5E-05 1.8E-09 40.1 2.1 25 72-96 33-58 (62)
63 KOG2865 NADH:ubiquinone oxidor 97.1 0.00055 1.2E-08 47.7 3.5 46 12-57 245-292 (391)
64 KOG1430 C-3 sterol dehydrogena 96.6 0.0054 1.2E-07 43.8 5.2 87 10-96 212-348 (361)
65 PF05368 NmrA: NmrA-like famil 95.9 0.011 2.3E-07 39.1 3.4 49 12-60 175-227 (233)
66 PLN02260 probable rhamnose bio 95.8 0.044 9.5E-07 41.9 6.8 78 13-92 563-660 (668)
67 KOG2774 NAD dependent epimeras 95.4 0.088 1.9E-06 36.1 6.3 88 8-95 246-352 (366)
68 TIGR03443 alpha_am_amid L-amin 95.1 0.054 1.2E-06 44.4 5.5 48 10-57 1211-1262(1389)
69 PLN02503 fatty acyl-CoA reduct 95.0 0.053 1.1E-06 41.4 4.8 51 9-59 415-473 (605)
70 PRK06482 short chain dehydroge 95.0 0.04 8.6E-07 37.2 3.7 44 15-58 218-262 (276)
71 PRK07806 short chain dehydroge 93.8 0.065 1.4E-06 35.4 2.8 31 14-44 212-243 (248)
72 PRK08263 short chain dehydroge 93.4 0.18 3.9E-06 34.1 4.4 44 14-57 215-261 (275)
73 PRK06077 fabG 3-ketoacyl-(acyl 92.8 0.18 4E-06 33.2 3.8 31 13-43 213-244 (252)
74 PRK07074 short chain dehydroge 92.8 0.23 5E-06 33.0 4.2 45 12-56 206-254 (257)
75 PLN00141 Tic62-NAD(P)-related 92.2 0.34 7.3E-06 32.4 4.4 44 13-56 202-250 (251)
76 TIGR01963 PHB_DH 3-hydroxybuty 91.8 0.28 6.1E-06 32.3 3.6 32 11-42 216-250 (255)
77 PRK13394 3-hydroxybutyrate deh 91.2 0.28 6.1E-06 32.5 3.2 32 12-43 224-258 (262)
78 COG0702 Predicted nucleoside-d 90.6 1.2 2.6E-05 29.6 5.9 51 9-59 167-219 (275)
79 PRK07775 short chain dehydroge 89.7 0.51 1.1E-05 31.9 3.5 30 12-41 220-249 (274)
80 PRK12429 3-hydroxybutyrate deh 89.1 0.57 1.2E-05 30.9 3.3 33 11-43 219-254 (258)
81 PRK05875 short chain dehydroge 87.5 1.4 3.1E-05 29.5 4.5 45 13-57 217-269 (276)
82 PRK06914 short chain dehydroge 86.7 0.9 1.9E-05 30.6 3.2 36 13-48 224-260 (280)
83 PRK12935 acetoacetyl-CoA reduc 84.8 1.5 3.3E-05 28.8 3.5 32 12-43 211-244 (247)
84 PRK05876 short chain dehydroge 84.7 2.7 5.8E-05 28.5 4.7 41 11-55 219-259 (275)
85 PRK06180 short chain dehydroge 84.2 2.2 4.8E-05 28.8 4.1 32 13-44 219-250 (277)
86 PRK08219 short chain dehydroge 83.5 1.7 3.7E-05 28.0 3.3 29 13-41 193-221 (227)
87 PF02719 Polysacc_synt_2: Poly 82.0 0.96 2.1E-05 31.7 1.7 51 9-59 197-248 (293)
88 PRK12826 3-ketoacyl-(acyl-carr 81.1 1.6 3.5E-05 28.6 2.5 31 14-44 214-247 (251)
89 COG1086 Predicted nucleoside-d 78.2 8.2 0.00018 29.7 5.6 52 8-59 444-496 (588)
90 KOG1221 Acyl-CoA reductase [Li 77.1 11 0.00024 28.3 5.9 51 9-59 273-332 (467)
91 PRK09135 pteridine reductase; 76.1 2.9 6.4E-05 27.3 2.6 28 15-42 214-243 (249)
92 PRK12829 short chain dehydroge 74.9 4.3 9.2E-05 26.8 3.2 30 13-42 227-259 (264)
93 KOG4288 Predicted oxidoreducta 72.3 6.1 0.00013 27.2 3.3 44 4-54 235-278 (283)
94 PRK09134 short chain dehydroge 72.3 5.9 0.00013 26.3 3.3 29 14-42 213-242 (258)
95 PRK06182 short chain dehydroge 69.5 8.2 0.00018 25.9 3.6 31 13-43 218-248 (273)
96 PRK08324 short chain dehydroge 67.5 9 0.0002 29.7 3.8 31 12-42 640-673 (681)
97 PRK07060 short chain dehydroge 66.2 9.5 0.00021 24.8 3.3 31 12-42 207-240 (245)
98 PRK12828 short chain dehydroge 65.0 9.3 0.0002 24.7 3.1 31 12-42 201-234 (239)
99 PRK08017 oxidoreductase; Provi 64.9 17 0.00037 23.8 4.4 22 13-34 204-225 (256)
100 PRK12384 sorbitol-6-phosphate 63.3 8.9 0.00019 25.3 2.8 32 12-43 221-255 (259)
101 PRK12825 fabG 3-ketoacyl-(acyl 63.0 12 0.00025 24.3 3.3 29 14-42 213-244 (249)
102 PRK07067 sorbitol dehydrogenas 62.1 12 0.00027 24.7 3.3 32 12-43 219-253 (257)
103 PRK05653 fabG 3-ketoacyl-(acyl 57.9 17 0.00037 23.5 3.4 31 13-43 210-243 (246)
104 PF11112 PyocinActivator: Pyoc 56.9 9 0.00019 21.4 1.6 17 11-27 54-70 (76)
105 PF03808 Glyco_tran_WecB: Glyc 56.1 26 0.00055 22.3 3.9 47 15-62 30-76 (172)
106 PRK07041 short chain dehydroge 55.4 20 0.00043 23.2 3.3 28 15-42 197-225 (230)
107 KOG3560 Aryl-hydrocarbon recep 54.9 15 0.00033 28.3 2.9 25 10-34 316-343 (712)
108 PRK08628 short chain dehydroge 54.9 11 0.00023 25.0 2.0 36 14-49 217-255 (258)
109 TIGR00696 wecB_tagA_cpsF bacte 54.4 29 0.00063 22.4 3.9 44 19-63 34-77 (177)
110 PF13730 HTH_36: Helix-turn-he 52.6 21 0.00045 17.8 2.5 17 83-99 39-55 (55)
111 TIGR01830 3oxo_ACP_reduc 3-oxo 52.4 24 0.00052 22.7 3.4 30 14-43 205-237 (239)
112 PRK12746 short chain dehydroge 52.1 21 0.00046 23.4 3.2 31 13-43 218-251 (254)
113 TIGR03853 matur_matur probable 52.1 35 0.00076 19.1 3.5 21 37-57 36-57 (77)
114 PF00325 Crp: Bacterial regula 51.0 21 0.00044 16.5 2.1 17 83-99 16-32 (32)
115 KOG4388 Hormone-sensitive lipa 50.9 10 0.00022 29.7 1.5 32 10-41 124-156 (880)
116 PRK08217 fabG 3-ketoacyl-(acyl 50.2 28 0.0006 22.7 3.4 30 13-42 219-249 (253)
117 PRK06181 short chain dehydroge 49.0 19 0.00041 23.8 2.5 20 12-31 206-225 (263)
118 PRK05557 fabG 3-ketoacyl-(acyl 47.1 34 0.00073 22.1 3.5 29 14-42 212-243 (248)
119 PF10264 Stork_head: Winged he 46.7 53 0.0012 18.5 4.8 43 14-65 8-50 (80)
120 cd06533 Glyco_transf_WecG_TagA 46.7 46 0.00099 21.2 3.9 48 14-62 27-74 (171)
121 KOG1271 Methyltransferases [Ge 46.5 25 0.00054 23.5 2.6 24 34-57 173-196 (227)
122 PF02268 TFIIA_gamma_N: Transc 46.3 20 0.00044 18.3 1.8 21 81-101 10-30 (49)
123 PRK07774 short chain dehydroge 44.9 28 0.00061 22.7 2.8 28 15-42 214-244 (250)
124 PRK08063 enoyl-(acyl carrier p 44.3 33 0.00072 22.4 3.1 29 14-42 213-244 (250)
125 PRK07231 fabG 3-ketoacyl-(acyl 39.9 48 0.001 21.5 3.3 30 13-42 214-246 (251)
126 COG3319 Thioesterase domains o 39.2 56 0.0012 22.5 3.6 48 10-57 39-89 (257)
127 PF08338 DUF1731: Domain of un 39.1 23 0.0005 17.8 1.3 17 73-89 29-47 (48)
128 PRK06138 short chain dehydroge 38.4 46 0.001 21.7 3.1 20 14-33 216-235 (252)
129 PRK12939 short chain dehydroge 38.0 60 0.0013 21.0 3.6 21 12-32 212-232 (250)
130 PLN00124 succinyl-CoA ligase [ 35.3 1.9E+02 0.0041 21.5 7.8 73 19-91 331-418 (422)
131 PRK09186 flagellin modificatio 32.6 43 0.00093 21.9 2.2 20 13-32 220-239 (256)
132 PF10678 DUF2492: Protein of u 32.1 69 0.0015 18.0 2.6 21 37-57 38-59 (78)
133 KOG1342 Histone deacetylase co 31.1 35 0.00077 25.1 1.7 19 13-31 146-164 (425)
134 PRK06194 hypothetical protein; 29.8 76 0.0017 21.2 3.1 15 11-25 217-231 (287)
135 TIGR01832 kduD 2-deoxy-D-gluco 29.2 77 0.0017 20.6 3.0 28 13-40 211-240 (248)
136 PRK12823 benD 1,6-dihydroxycyc 28.8 83 0.0018 20.7 3.1 28 15-42 226-256 (260)
137 PF02887 PK_C: Pyruvate kinase 28.4 1E+02 0.0022 18.0 3.2 21 81-101 72-92 (117)
138 PRK12744 short chain dehydroge 28.2 86 0.0019 20.6 3.1 29 14-42 222-252 (257)
139 PRK06924 short chain dehydroge 27.5 87 0.0019 20.4 3.0 24 15-38 220-244 (251)
140 PF11782 DUF3319: Protein of u 27.5 63 0.0014 18.6 2.0 18 84-101 35-53 (88)
141 PRK07523 gluconate 5-dehydroge 27.3 87 0.0019 20.5 3.0 30 13-42 217-249 (255)
142 PRK05650 short chain dehydroge 26.2 65 0.0014 21.4 2.3 19 13-31 207-225 (270)
143 PF14606 Lipase_GDSL_3: GDSL-l 26.2 1.4E+02 0.003 19.5 3.7 23 76-98 114-136 (178)
144 PF00975 Thioesterase: Thioest 26.2 94 0.002 19.9 3.0 46 12-57 42-90 (229)
145 PF00036 EF-hand_1: EF hand; 26.1 73 0.0016 13.9 1.9 14 43-56 15-28 (29)
146 PLN02253 xanthoxin dehydrogena 25.8 69 0.0015 21.4 2.4 28 15-42 237-267 (280)
147 PRK07578 short chain dehydroge 25.5 55 0.0012 20.6 1.8 19 14-32 172-190 (199)
148 PF00376 MerR: MerR family reg 25.3 88 0.0019 14.7 2.0 14 87-100 13-26 (38)
149 COG3449 DNA gyrase inhibitor [ 25.2 78 0.0017 20.2 2.3 28 73-101 17-44 (154)
150 PF11432 DUF3197: Protein of u 25.0 90 0.0019 18.7 2.4 26 73-98 48-74 (113)
151 PRK12745 3-ketoacyl-(acyl-carr 25.0 1.3E+02 0.0028 19.6 3.5 31 13-43 217-250 (256)
152 PF09176 Mpt_N: Methylene-tetr 24.9 91 0.002 17.7 2.3 49 15-63 23-74 (81)
153 KOG3128 Uncharacterized conser 24.5 2.6E+02 0.0056 19.7 5.0 92 4-96 4-114 (298)
154 PRK07890 short chain dehydroge 24.1 1.1E+02 0.0024 20.0 3.1 18 14-31 222-239 (258)
155 PRK06701 short chain dehydroge 24.0 1.3E+02 0.0029 20.4 3.5 30 13-42 252-284 (290)
156 KOG0625 Phosphoglucomutase [Ca 23.8 2.1E+02 0.0046 21.7 4.5 44 14-57 32-77 (558)
157 PF04659 Arch_fla_DE: Archaeal 23.7 52 0.0011 19.3 1.2 16 85-100 36-51 (99)
158 KOG0886 40S ribosomal protein 23.5 1.6E+02 0.0035 18.6 3.4 44 16-59 73-120 (167)
159 PF13545 HTH_Crp_2: Crp-like h 23.3 94 0.002 16.3 2.2 15 85-99 44-58 (76)
160 PRK06123 short chain dehydroge 23.0 1.2E+02 0.0026 19.6 3.1 27 16-42 217-246 (248)
161 cd07221 Pat_PNPLA3 Patatin-lik 23.0 91 0.002 21.3 2.5 19 82-100 231-249 (252)
162 PRK07825 short chain dehydroge 22.7 91 0.002 20.7 2.5 21 13-33 197-217 (273)
163 PRK06179 short chain dehydroge 22.4 1.4E+02 0.0031 19.7 3.4 27 15-41 214-240 (270)
164 cd04761 HTH_MerR-SF Helix-Turn 21.9 1.1E+02 0.0024 14.4 2.2 14 88-101 15-28 (49)
165 cd07218 Pat_iPLA2 Calcium-inde 21.9 92 0.002 21.1 2.3 18 82-99 228-245 (245)
166 PRK12937 short chain dehydroge 21.7 1.3E+02 0.0028 19.4 3.0 19 14-32 211-229 (245)
167 PF04784 DUF547: Protein of un 21.6 1.6E+02 0.0036 17.4 3.2 57 37-93 51-116 (117)
168 KOG3236 Predicted membrane pro 21.4 72 0.0016 21.4 1.7 43 8-50 68-111 (225)
169 PRK06124 gluconate 5-dehydroge 21.3 1.4E+02 0.0031 19.4 3.2 27 14-40 219-247 (256)
170 PRK08220 2,3-dihydroxybenzoate 21.1 88 0.0019 20.4 2.1 19 13-31 214-232 (252)
171 PF11372 DUF3173: Domain of un 21.1 1E+02 0.0022 16.3 1.9 25 74-98 11-35 (59)
172 PF05841 Apc15p: Apc15p protei 21.0 34 0.00073 20.8 0.1 21 73-95 92-113 (125)
173 PRK10721 hypothetical protein; 20.6 1.2E+02 0.0026 16.5 2.2 16 13-28 3-18 (66)
174 smart00419 HTH_CRP helix_turn_ 20.3 1E+02 0.0022 14.3 1.8 16 85-100 24-39 (48)
175 cd06395 PB1_Map2k5 PB1 domain 20.2 1.2E+02 0.0025 17.4 2.1 20 42-61 20-39 (91)
176 TIGR02415 23BDH acetoin reduct 20.1 1.2E+02 0.0026 19.7 2.6 27 14-40 218-246 (254)
No 1
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=99.83 E-value=3.9e-20 Score=127.77 Aligned_cols=100 Identities=32% Similarity=0.533 Sum_probs=87.5
Q ss_pred CCCCCcccCCCCCCceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHHHHcCCCcCCCcccCC----------
Q 036612 1 MLDGNESLEDKNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYDYSKSFTKV---------- 70 (102)
Q Consensus 1 ~~g~~~~~~~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~~~~p~~~~p~~~~~~---------- 70 (102)
|+|....+++.+..||||+|||+||++|++++.+.|||+|.++..++.|+++++.+.+|.+++|....+.
T Consensus 214 i~G~~~~~~n~~~~~VdVrDVA~AHv~a~E~~~a~GRyic~~~~~~~~ei~~~l~~~~P~~~ip~~~~~~~~~~~~~~~~ 293 (327)
T KOG1502|consen 214 IKGLAETYPNFWLAFVDVRDVALAHVLALEKPSAKGRYICVGEVVSIKEIADILRELFPDYPIPKKNAEEHEGFLTSFKV 293 (327)
T ss_pred HhcccccCCCCceeeEeHHHHHHHHHHHHcCcccCceEEEecCcccHHHHHHHHHHhCCCCCCCCCCCcccccccccccc
Confidence 5788889999999999999999999999999999999999998888999999999999988887654322
Q ss_pred --C-cCcCC-CeecCHHHHHHHHHHHHHHcCCCC
Q 036612 71 --D-EGNLG-WKYRPLEESIHDSDKNYEESGILH 100 (102)
Q Consensus 71 --~-~~~lg-~~~~~l~e~i~~~~~~~~~~~~~~ 100 (102)
+ .+.|| |++++++|++.+++.++++.|.+.
T Consensus 294 ~~~k~k~lg~~~~~~l~e~~~dt~~sl~~~~~l~ 327 (327)
T KOG1502|consen 294 SSEKLKSLGGFKFRPLEETLSDTVESLREKGLLL 327 (327)
T ss_pred ccHHHHhcccceecChHHHHHHHHHHHHHhcCCC
Confidence 1 25666 899999999999999999998763
No 2
>PLN02214 cinnamoyl-CoA reductase
Probab=99.81 E-value=3.2e-19 Score=124.55 Aligned_cols=99 Identities=24% Similarity=0.373 Sum_probs=79.9
Q ss_pred CCCcccCCCCCCceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHHHHcCCCcCCCcc------------cCC
Q 036612 3 DGNESLEDKNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYDYSKSF------------TKV 70 (102)
Q Consensus 3 g~~~~~~~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~~~~p~~~~p~~~------------~~~ 70 (102)
|+.+.++++.++||||+|||++|++|++++..+|+||++++.++++|+++.+++.+|..++|... .|.
T Consensus 213 g~~~~~~~~~~~~i~V~Dva~a~~~al~~~~~~g~yn~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 292 (342)
T PLN02214 213 GSAKTYANLTQAYVDVRDVALAHVLVYEAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTN 292 (342)
T ss_pred CCcccCCCCCcCeeEHHHHHHHHHHHHhCcccCCcEEEecCCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCc
Confidence 44455567789999999999999999998766669998877899999999999998754443221 122
Q ss_pred C-cCcCCCeecCHHHHHHHHHHHHHHcCCCCC
Q 036612 71 D-EGNLGWKYRPLEESIHDSDKNYEESGILHK 101 (102)
Q Consensus 71 ~-~~~lg~~~~~l~e~i~~~~~~~~~~~~~~~ 101 (102)
+ .++|||+|++++|+|+++++|+++.|+++|
T Consensus 293 ~k~~~LG~~p~~lee~i~~~~~~~~~~~~~~~ 324 (342)
T PLN02214 293 QKIKDLGLEFTSTKQSLYDTVKSLQEKGHLAP 324 (342)
T ss_pred HHHHHcCCcccCHHHHHHHHHHHHHHcCCCCC
Confidence 2 246999999999999999999999999865
No 3
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=99.74 E-value=1.8e-17 Score=114.38 Aligned_cols=92 Identities=24% Similarity=0.383 Sum_probs=75.4
Q ss_pred cCCCCCCceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHHHHcCCCcCCCcc-----------cCCC-cCcC
Q 036612 8 LEDKNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYDYSKSF-----------TKVD-EGNL 75 (102)
Q Consensus 8 ~~~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~~~~p~~~~p~~~-----------~~~~-~~~l 75 (102)
++...++||||+|+|++|+.+++++...++||++++.+|++|++++|++.+|.+.+|... .+.+ .+.|
T Consensus 219 ~~~~~~~~v~v~Dva~a~~~al~~~~~~~~yni~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 298 (322)
T PLN02986 219 FNNRFYRFVDVRDVALAHIKALETPSANGRYIIDGPIMSVNDIIDILRELFPDLCIADTNEESEMNEMICKVCVEKVKNL 298 (322)
T ss_pred CCCcCcceeEHHHHHHHHHHHhcCcccCCcEEEecCCCCHHHHHHHHHHHCCCCCCCCCCccccccccCCccCHHHHHHc
Confidence 345668999999999999999998766669999878899999999999999865443211 1222 2669
Q ss_pred CCeecCHHHHHHHHHHHHHHcCCC
Q 036612 76 GWKYRPLEESIHDSDKNYEESGIL 99 (102)
Q Consensus 76 g~~~~~l~e~i~~~~~~~~~~~~~ 99 (102)
||+|++++|+|+++++|+++.|++
T Consensus 299 g~~~~~l~e~~~~~~~~~~~~~~~ 322 (322)
T PLN02986 299 GVEFTPMKSSLRDTILSLKEKCLL 322 (322)
T ss_pred CCcccCHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999875
No 4
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=99.71 E-value=1.4e-16 Score=109.53 Aligned_cols=93 Identities=23% Similarity=0.419 Sum_probs=74.9
Q ss_pred ccCCCCCCceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHHHHcCCCcCCCcc-----------cCCC-cCc
Q 036612 7 SLEDKNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYDYSKSF-----------TKVD-EGN 74 (102)
Q Consensus 7 ~~~~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~~~~p~~~~p~~~-----------~~~~-~~~ 74 (102)
.+|+..++||||+|||++++.+++.+...|+|+++++.+|++|+++.+.+.+|..++|... .|.+ .+.
T Consensus 217 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 296 (322)
T PLN02662 217 TFPNASYRWVDVRDVANAHIQAFEIPSASGRYCLVERVVHYSEVVKILHELYPTLQLPEKCADDKPYVPTYQVSKEKAKS 296 (322)
T ss_pred cCCCCCcCeEEHHHHHHHHHHHhcCcCcCCcEEEeCCCCCHHHHHHHHHHHCCCCCCCCCCCCccccccccccChHHHHH
Confidence 4567789999999999999999998665568888888899999999999988654333211 1222 245
Q ss_pred CCCeecCHHHHHHHHHHHHHHcCCC
Q 036612 75 LGWKYRPLEESIHDSDKNYEESGIL 99 (102)
Q Consensus 75 lg~~~~~l~e~i~~~~~~~~~~~~~ 99 (102)
|||++++++++|+++++|++++|++
T Consensus 297 lg~~~~~~~~~l~~~~~~~~~~~~~ 321 (322)
T PLN02662 297 LGIEFIPLEVSLKDTVESLKEKGFL 321 (322)
T ss_pred hCCccccHHHHHHHHHHHHHHcCCC
Confidence 9999889999999999999999986
No 5
>PLN00198 anthocyanidin reductase; Provisional
Probab=99.67 E-value=8.3e-16 Score=106.81 Aligned_cols=90 Identities=20% Similarity=0.363 Sum_probs=71.3
Q ss_pred CCCCceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHHHHcCCCcCCCcc----------cCCC-cCcCCCee
Q 036612 11 KNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYDYSKSF----------TKVD-EGNLGWKY 79 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~~~~p~~~~p~~~----------~~~~-~~~lg~~~ 79 (102)
+.++||||+|+|++++.+++.+...++|++++..+|++|+++.+.+.+|..+++... .+.+ .+.+||+|
T Consensus 236 ~~~~~i~V~D~a~a~~~~~~~~~~~~~~~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~G~~p 315 (338)
T PLN00198 236 GSISITHVEDVCRAHIFLAEKESASGRYICCAANTSVPELAKFLIKRYPQYQVPTDFGDFPSKAKLIISSEKLISEGFSF 315 (338)
T ss_pred CCcceeEHHHHHHHHHHHhhCcCcCCcEEEecCCCCHHHHHHHHHHHCCCCCCCccccccCCCCccccChHHHHhCCcee
Confidence 458999999999999999987655568887778899999999999988643332111 1222 23469999
Q ss_pred c-CHHHHHHHHHHHHHHcCCCC
Q 036612 80 R-PLEESIHDSDKNYEESGILH 100 (102)
Q Consensus 80 ~-~l~e~i~~~~~~~~~~~~~~ 100 (102)
+ +++|+|+++++|+++.++++
T Consensus 316 ~~~l~~gi~~~~~~~~~~~~~~ 337 (338)
T PLN00198 316 EYGIEEIYDQTVEYFKAKGLLK 337 (338)
T ss_pred cCcHHHHHHHHHHHHHHcCCCC
Confidence 9 99999999999999999875
No 6
>PLN02650 dihydroflavonol-4-reductase
Probab=99.66 E-value=8.7e-16 Score=107.26 Aligned_cols=91 Identities=24% Similarity=0.521 Sum_probs=72.5
Q ss_pred CCCCceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHHHHcCCCcCCCcc-----------cCCC-cCcCCCe
Q 036612 11 KNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYDYSKSF-----------TKVD-EGNLGWK 78 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~~~~p~~~~p~~~-----------~~~~-~~~lg~~ 78 (102)
..++||||+|+|++++.+++.+...++|+++++.+|++|+++.|.+.++...+|... .+.+ .+.|||+
T Consensus 224 ~~r~~v~V~Dva~a~~~~l~~~~~~~~~i~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~ 303 (351)
T PLN02650 224 KQGQFVHLDDLCNAHIFLFEHPAAEGRYICSSHDATIHDLAKMLREKYPEYNIPARFPGIDEDLKSVEFSSKKLTDLGFT 303 (351)
T ss_pred CCcceeeHHHHHHHHHHHhcCcCcCceEEecCCCcCHHHHHHHHHHhCcccCCCCCCCCcCcccccccCChHHHHHhCCC
Confidence 357999999999999999987655568877788899999999999987644332211 1111 2579999
Q ss_pred ec-CHHHHHHHHHHHHHHcCCCCC
Q 036612 79 YR-PLEESIHDSDKNYEESGILHK 101 (102)
Q Consensus 79 ~~-~l~e~i~~~~~~~~~~~~~~~ 101 (102)
|+ +++++|+++++|+++.+++++
T Consensus 304 p~~~l~egl~~~i~~~~~~~~~~~ 327 (351)
T PLN02650 304 FKYSLEDMFDGAIETCREKGLIPL 327 (351)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCc
Confidence 99 999999999999999998753
No 7
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=99.66 E-value=1.2e-15 Score=105.45 Aligned_cols=89 Identities=24% Similarity=0.319 Sum_probs=71.0
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHHHHcCCCcCCCc------------ccCCC-cCcCC
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYDYSKS------------FTKVD-EGNLG 76 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~~~~p~~~~p~~------------~~~~~-~~~lg 76 (102)
...++|+||+|+|++++.+++++...|+||++++.+|++|++++|++.+|...++.. ..+.+ .+.||
T Consensus 222 ~~~r~~i~v~Dva~a~~~~l~~~~~~~~~ni~~~~~s~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg 301 (325)
T PLN02989 222 TTHHRFVDVRDVALAHVKALETPSANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNEDITELNSVTFNVCLDKVKSLG 301 (325)
T ss_pred CcCcCeeEHHHHHHHHHHHhcCcccCceEEEecCCCCHHHHHHHHHHHCCCCCCCCCCCCcccccccCcCCCHHHHHHcC
Confidence 456899999999999999998766556899987889999999999999975332211 11222 24599
Q ss_pred Ceec-CHHHHHHHHHHHHHHcCC
Q 036612 77 WKYR-PLEESIHDSDKNYEESGI 98 (102)
Q Consensus 77 ~~~~-~l~e~i~~~~~~~~~~~~ 98 (102)
|+|. +++|||+++++|++++|.
T Consensus 302 ~~p~~~l~~gi~~~~~~~~~~~~ 324 (325)
T PLN02989 302 IIEFTPTETSLRDTVLSLKEKCL 324 (325)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCC
Confidence 9999 999999999999998775
No 8
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=99.60 E-value=9.3e-15 Score=102.21 Aligned_cols=90 Identities=22% Similarity=0.388 Sum_probs=70.4
Q ss_pred CCCceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHHHHcCCCc----C-CCcc------cCCC-cCcCCCee
Q 036612 12 NRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYD----Y-SKSF------TKVD-EGNLGWKY 79 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~~~~p~~~----~-p~~~------~~~~-~~~lg~~~ 79 (102)
.++||||+|+|++++.+++.+...++|++++..+|++|+++.+.+.+|... + +... .+.+ .+.|||+|
T Consensus 245 ~~dfi~v~Dva~a~~~~l~~~~~~~~~~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGw~p 324 (353)
T PLN02896 245 SIALVHIEDICDAHIFLMEQTKAEGRYICCVDSYDMSELINHLSKEYPCSNIQVRLDEEKRGSIPSEISSKKLRDLGFEY 324 (353)
T ss_pred ceeEEeHHHHHHHHHHHHhCCCcCccEEecCCCCCHHHHHHHHHHhCCCCCccccccccccCccccccCHHHHHHcCCCc
Confidence 469999999999999999875555588887888999999999999886321 1 1110 1111 25699999
Q ss_pred c-CHHHHHHHHHHHHHHcCCCCC
Q 036612 80 R-PLEESIHDSDKNYEESGILHK 101 (102)
Q Consensus 80 ~-~l~e~i~~~~~~~~~~~~~~~ 101 (102)
+ +++++|+++++|+++.+.+++
T Consensus 325 ~~~l~~~i~~~~~~~~~~~~~~~ 347 (353)
T PLN02896 325 KYGIEEIIDQTIDCCVDHGFLPQ 347 (353)
T ss_pred cCCHHHHHHHHHHHHHHCCCCCc
Confidence 9 999999999999999887653
No 9
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=3e-14 Score=97.55 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=67.8
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCc---cEEEe-cCcccHHHHHHHHHHHcCC-Cc--C-CCcccCCC---------c
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKR---RYICT-SFAIRMQALAVKIKIMFLN-YD--Y-SKSFTKVD---------E 72 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~---~~~~~-~~~~s~~ei~~~i~~~~p~-~~--~-p~~~~~~~---------~ 72 (102)
...||||||.|+|+||++|++.-..+| .||++ |..+|+.|+++.+++..+. ++ + |++..|.. +
T Consensus 219 T~iRDYIHV~DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~RR~GDpa~l~Ad~~kA~ 298 (329)
T COG1087 219 TCIRDYIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRAGDPAILVADSSKAR 298 (329)
T ss_pred CeeeeeeehhHHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCCCCCCCceeEeCHHHHH
Confidence 467999999999999999998644333 58887 6789999999999999862 22 1 33333321 5
Q ss_pred CcCCCeec--CHHHHHHHHHHHHHH
Q 036612 73 GNLGWKYR--PLEESIHDSDKNYEE 95 (102)
Q Consensus 73 ~~lg~~~~--~l~e~i~~~~~~~~~ 95 (102)
++|||+|+ ++++.++++++|...
T Consensus 299 ~~Lgw~p~~~~L~~ii~~aw~W~~~ 323 (329)
T COG1087 299 QILGWQPTYDDLEDIIKDAWDWHQQ 323 (329)
T ss_pred HHhCCCcccCCHHHHHHHHHHHhhh
Confidence 89999998 999999999999873
No 10
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=99.48 E-value=2.8e-13 Score=93.07 Aligned_cols=96 Identities=21% Similarity=0.302 Sum_probs=72.6
Q ss_pred CCcccCCCCCCceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHHHHcCC----CcCCCcc------------
Q 036612 4 GNESLEDKNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLN----YDYSKSF------------ 67 (102)
Q Consensus 4 ~~~~~~~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~~~~p~----~~~p~~~------------ 67 (102)
..|...+...+|+||+|+|++++.+++++..+..|+++++.+|++|+++.+.+.++. ..+|...
T Consensus 193 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 272 (328)
T TIGR03466 193 KMPAYVDTGLNLVHVDDVAEGHLLALERGRIGERYILGGENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALA 272 (328)
T ss_pred CCceeeCCCcceEEHHHHHHHHHHHHhCCCCCceEEecCCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 344445667899999999999999998754333788888889999999999998752 1223110
Q ss_pred ----------------------cCCC--cCcCCCeecCHHHHHHHHHHHHHHcCCC
Q 036612 68 ----------------------TKVD--EGNLGWKYRPLEESIHDSDKNYEESGIL 99 (102)
Q Consensus 68 ----------------------~~~~--~~~lg~~~~~l~e~i~~~~~~~~~~~~~ 99 (102)
.|.+ .+.|||+|++++++|+++++|+++.|.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~i~~~~~~~~~~~~~ 328 (328)
T TIGR03466 273 RLTGKEPRVTVDGVRMAKKKMFFSSAKAVRELGYRQRPAREALRDAVEWFRANGYL 328 (328)
T ss_pred HhcCCCCCCCHHHHHHHhccCCCChHHHHHHcCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 0111 4789999999999999999999988754
No 11
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=4.4e-13 Score=91.76 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=71.3
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEec-CcccHHHHHHHHHHHcCCC-c-----C---CCcc-------cCCC-
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICTS-FAIRMQALAVKIKIMFLNY-D-----Y---SKSF-------TKVD- 71 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~-~~~s~~ei~~~i~~~~p~~-~-----~---p~~~-------~~~~- 71 (102)
.+.|||+||+|-|+|+-..+++...+..||+++ ...+..|+++.|.+.+.+. + + ..+. .+.+
T Consensus 213 ~~iRDWl~VeDh~~ai~~Vl~kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~K 292 (340)
T COG1088 213 LQIRDWLYVEDHCRAIDLVLTKGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASK 292 (340)
T ss_pred cceeeeEEeHhHHHHHHHHHhcCcCCceEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHH
Confidence 578999999999999999999988855999875 5689999999999998642 1 1 1110 1222
Q ss_pred -cCcCCCeec-CHHHHHHHHHHHHHHcCC
Q 036612 72 -EGNLGWKYR-PLEESIHDSDKNYEESGI 98 (102)
Q Consensus 72 -~~~lg~~~~-~l~e~i~~~~~~~~~~~~ 98 (102)
.++|||.|+ ++|+||++|++||.++.|
T Consensus 293 i~~eLgW~P~~~fe~GlrkTv~WY~~N~~ 321 (340)
T COG1088 293 IKRELGWRPQETFETGLRKTVDWYLDNEW 321 (340)
T ss_pred HhhhcCCCcCCCHHHHHHHHHHHHHhchH
Confidence 489999999 999999999999998754
No 12
>PLN02427 UDP-apiose/xylose synthase
Probab=99.44 E-value=4.6e-13 Score=94.73 Aligned_cols=87 Identities=16% Similarity=0.352 Sum_probs=65.7
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCC-CCc-cEEEec--CcccHHHHHHHHHHHcCCC---c--------CCCc------cc
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPE-AKR-RYICTS--FAIRMQALAVKIKIMFLNY---D--------YSKS------FT 68 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~-~~~-~~~~~~--~~~s~~ei~~~i~~~~p~~---~--------~p~~------~~ 68 (102)
...++||||+|+|++++.+++++. ..| .||+++ +.+|++|+++.+.+.++.. + ++.. ..
T Consensus 254 ~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (386)
T PLN02427 254 QSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPTVDVSSKEFYGEGYD 333 (386)
T ss_pred CceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhccccccccccccccccCcccccCcccc
Confidence 345799999999999999998763 345 799875 4799999999999987531 1 1110 01
Q ss_pred -------CCC--cCcCCCeec-CHHHHHHHHHHHHHHc
Q 036612 69 -------KVD--EGNLGWKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 69 -------~~~--~~~lg~~~~-~l~e~i~~~~~~~~~~ 96 (102)
|.+ +++|||+|+ +++++|+++++|++..
T Consensus 334 ~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~ 371 (386)
T PLN02427 334 DSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKT 371 (386)
T ss_pred chhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHH
Confidence 111 367999999 9999999999998763
No 13
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=99.43 E-value=7.4e-13 Score=92.11 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=66.0
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcCC-----CcC-CC--cc-------cCCC--
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFLN-----YDY-SK--SF-------TKVD-- 71 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p~-----~~~-p~--~~-------~~~~-- 71 (102)
+..++|+||+|+|+|++.++++.. .+.||++ ++.+|+.|+++.+.+..+. ..+ +. .. .|.+
T Consensus 227 ~~~rd~i~v~D~a~a~~~~~~~~~-~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 305 (340)
T PLN02653 227 DASRDWGFAGDYVEAMWLMLQQEK-PDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKA 305 (340)
T ss_pred cceecceeHHHHHHHHHHHHhcCC-CCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHH
Confidence 457999999999999999998643 3579886 5789999999999998752 111 11 00 1222
Q ss_pred cCcCCCeec-CHHHHHHHHHHHHHHc
Q 036612 72 EGNLGWKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 72 ~~~lg~~~~-~l~e~i~~~~~~~~~~ 96 (102)
.+.|||+|+ +++|||+++++|+++.
T Consensus 306 ~~~lgw~p~~~l~~gi~~~~~~~~~~ 331 (340)
T PLN02653 306 REVLGWKPKVGFEQLVKMMVDEDLEL 331 (340)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 477999999 9999999999998854
No 14
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=99.43 E-value=6.4e-13 Score=92.60 Aligned_cols=85 Identities=13% Similarity=0.204 Sum_probs=65.5
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcCC-Cc---------------------CCC-
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFLN-YD---------------------YSK- 65 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p~-~~---------------------~p~- 65 (102)
...++|+||+|+|++++.+++++. .+.||++ ++.+|++|+++.+.+.++. .. +..
T Consensus 221 ~~~rd~i~V~D~a~a~~~~~~~~~-~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (343)
T TIGR01472 221 DAKRDWGHAKDYVEAMWLMLQQDK-PDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPR 299 (343)
T ss_pred ccccCceeHHHHHHHHHHHHhcCC-CccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCcc
Confidence 568999999999999999998653 3589886 5789999999999998752 11 000
Q ss_pred --ccc-------CCC--cCcCCCeec-CHHHHHHHHHHHHHH
Q 036612 66 --SFT-------KVD--EGNLGWKYR-PLEESIHDSDKNYEE 95 (102)
Q Consensus 66 --~~~-------~~~--~~~lg~~~~-~l~e~i~~~~~~~~~ 95 (102)
... |.+ +++|||+|+ +++|+|+++++++++
T Consensus 300 ~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 300 YFRPTEVDLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred ccCCCccchhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 000 111 477999999 999999999998875
No 15
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=99.42 E-value=8.4e-13 Score=92.41 Aligned_cols=87 Identities=11% Similarity=0.125 Sum_probs=64.3
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCC---CCccEEEe-cCcccHHHHHHHHHHHcCCCc-------C---CCcc-------c
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPE---AKRRYICT-SFAIRMQALAVKIKIMFLNYD-------Y---SKSF-------T 68 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~---~~~~~~~~-~~~~s~~ei~~~i~~~~p~~~-------~---p~~~-------~ 68 (102)
...++||||+|+|+++++++.... .++.||++ ++.+|++|+++.+.+.++... + +... .
T Consensus 230 ~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (348)
T PRK15181 230 STSRDFCYIENVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQA 309 (348)
T ss_pred CceEeeEEHHHHHHHHHHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCccccccc
Confidence 346899999999999998876432 23489986 578999999999998775210 0 1000 1
Q ss_pred CCC--cCcCCCeec-CHHHHHHHHHHHHHHc
Q 036612 69 KVD--EGNLGWKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 69 ~~~--~~~lg~~~~-~l~e~i~~~~~~~~~~ 96 (102)
+.+ .+.|||+|+ +++|+|+++++|++..
T Consensus 310 d~~k~~~~lGw~P~~sl~egl~~~~~w~~~~ 340 (348)
T PRK15181 310 DITKIKTFLSYEPEFDIKEGLKQTLKWYIDK 340 (348)
T ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 111 367999999 9999999999999864
No 16
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=99.42 E-value=7.7e-13 Score=92.35 Aligned_cols=87 Identities=13% Similarity=0.145 Sum_probs=66.2
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcCC----CcC------------CCc------
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFLN----YDY------------SKS------ 66 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p~----~~~------------p~~------ 66 (102)
+..++|+||+|+|++++.+++....++.||++ ++.+|++|+++.+.+.++. .++ +..
T Consensus 221 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (355)
T PRK10217 221 QQIRDWLYVEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLR 300 (355)
T ss_pred CeeeCcCcHHHHHHHHHHHHhcCCCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCcc
Confidence 45899999999999999999875544589987 5679999999999987632 111 000
Q ss_pred -ccCCC--cCcCCCeec-CHHHHHHHHHHHHHHc
Q 036612 67 -FTKVD--EGNLGWKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 67 -~~~~~--~~~lg~~~~-~l~e~i~~~~~~~~~~ 96 (102)
..|.+ .++|||+|+ +++|+|+++++|++..
T Consensus 301 ~~~d~~k~~~~lg~~p~~~l~e~l~~~~~~~~~~ 334 (355)
T PRK10217 301 YAIDASKIARELGWLPQETFESGMRKTVQWYLAN 334 (355)
T ss_pred cccCHHHHHHhcCCCCcCcHHHHHHHHHHHHHhC
Confidence 01111 377999999 9999999999999875
No 17
>PLN00016 RNA-binding protein; Provisional
Probab=99.41 E-value=1.1e-12 Score=92.80 Aligned_cols=93 Identities=23% Similarity=0.274 Sum_probs=72.0
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCc-cEEEec-CcccHHHHHHHHHHHcCC-Cc---C-CCcc---------------
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKR-RYICTS-FAIRMQALAVKIKIMFLN-YD---Y-SKSF--------------- 67 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~-~~~~~~-~~~s~~ei~~~i~~~~p~-~~---~-p~~~--------------- 67 (102)
...++|+||+|+|++++.+++++...+ +|++++ +.+|+.|+++.+.+.++. .. . |...
T Consensus 241 ~~~~~~i~v~Dva~ai~~~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~ 320 (378)
T PLN00016 241 IQLTQLGHVKDLASMFALVVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHF 320 (378)
T ss_pred CeeeceecHHHHHHHHHHHhcCccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCcccccccccccccc
Confidence 446799999999999999998865444 898875 679999999999998752 11 1 1100
Q ss_pred -cCCC--cCcCCCeec-CHHHHHHHHHHHHHHcCCCCCC
Q 036612 68 -TKVD--EGNLGWKYR-PLEESIHDSDKNYEESGILHKE 102 (102)
Q Consensus 68 -~~~~--~~~lg~~~~-~l~e~i~~~~~~~~~~~~~~~~ 102 (102)
.+.+ .+.|||+|+ +++|+|+++++|+++.|.++++
T Consensus 321 ~~d~~ka~~~LGw~p~~~l~egl~~~~~~~~~~~~~~~~ 359 (378)
T PLN00016 321 FASPRKAKEELGWTPKFDLVEDLKDRYELYFGRGRDRKE 359 (378)
T ss_pred ccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCccc
Confidence 1111 367999999 9999999999999999988764
No 18
>PLN02240 UDP-glucose 4-epimerase
Probab=99.40 E-value=1.4e-12 Score=90.82 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=67.4
Q ss_pred CCCCCceeHHHHHHHHHHHhcCC----CCCc-cEEEe-cCcccHHHHHHHHHHHcCC-CcC---CCcc-------cCCC-
Q 036612 10 DKNRPLVDLRDVADVILVVYEKP----EAKR-RYICT-SFAIRMQALAVKIKIMFLN-YDY---SKSF-------TKVD- 71 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~----~~~~-~~~~~-~~~~s~~ei~~~i~~~~p~-~~~---p~~~-------~~~~- 71 (102)
...++||||+|+|++++.+++.. ...+ +||++ ++.+|++|+++.+.+.++. .++ +... .|.+
T Consensus 235 ~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k 314 (352)
T PLN02240 235 TGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPRRPGDAEEVYASTEK 314 (352)
T ss_pred CEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCCCCCChhhhhcCHHH
Confidence 45689999999999999988642 2333 89886 6789999999999998752 211 2111 1222
Q ss_pred -cCcCCCeec-CHHHHHHHHHHHHHHcCC
Q 036612 72 -EGNLGWKYR-PLEESIHDSDKNYEESGI 98 (102)
Q Consensus 72 -~~~lg~~~~-~l~e~i~~~~~~~~~~~~ 98 (102)
.++|||+|+ +++++|+++++|+++++.
T Consensus 315 ~~~~lg~~p~~~l~~~l~~~~~~~~~~~~ 343 (352)
T PLN02240 315 AEKELGWKAKYGIDEMCRDQWNWASKNPY 343 (352)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHhCcc
Confidence 377999999 999999999999998754
No 19
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=99.37 E-value=2.7e-12 Score=89.73 Aligned_cols=87 Identities=21% Similarity=0.246 Sum_probs=64.8
Q ss_pred CCCCCceeHHHHHHHHHHHhcCC-----CCCccEEEec---CcccHHHHHHHHHHHcCCC--cC--CC---cc-------
Q 036612 10 DKNRPLVDLRDVADVILVVYEKP-----EAKRRYICTS---FAIRMQALAVKIKIMFLNY--DY--SK---SF------- 67 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~-----~~~~~~~~~~---~~~s~~ei~~~i~~~~p~~--~~--p~---~~------- 67 (102)
.+.++|+||+|+|+|++.++++. ..++.||+++ +.+|+.++++.+.+..+.. .+ +. ..
T Consensus 220 ~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T TIGR02622 220 DATRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLK 299 (349)
T ss_pred CcccceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceee
Confidence 57899999999999999888642 1234899974 5799999999999876532 11 10 01
Q ss_pred cCCC--cCcCCCeec-CHHHHHHHHHHHHHHc
Q 036612 68 TKVD--EGNLGWKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 68 ~~~~--~~~lg~~~~-~l~e~i~~~~~~~~~~ 96 (102)
.+.+ .++|||+|+ +++++|+++++|+++.
T Consensus 300 ~d~~k~~~~lgw~p~~~l~~gi~~~i~w~~~~ 331 (349)
T TIGR02622 300 LDSSKARTLLGWHPRWGLEEAVSRTVDWYKAW 331 (349)
T ss_pred cCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 1122 366899999 9999999999999763
No 20
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=99.36 E-value=2.7e-12 Score=88.93 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=65.6
Q ss_pred CCCCceeHHHHHHHHHHHhcCC--CCCc-cEEEe-cCcccHHHHHHHHHHHcCC-Cc---CCCccc-------CCC--cC
Q 036612 11 KNRPLVDLRDVADVILVVYEKP--EAKR-RYICT-SFAIRMQALAVKIKIMFLN-YD---YSKSFT-------KVD--EG 73 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~a~~~~--~~~~-~~~~~-~~~~s~~ei~~~i~~~~p~-~~---~p~~~~-------~~~--~~ 73 (102)
+.++||||+|+|++++.|++.. ..++ .||++ ++.+|++|+++.+.+.++. .+ .|.... +.+ .+
T Consensus 229 ~~~~~v~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~ 308 (338)
T PRK10675 229 GVRDYIHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADR 308 (338)
T ss_pred EEEeeEEHHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCCCCCchhhhhcCHHHHHH
Confidence 4589999999999999999752 2333 79887 5679999999999998752 11 122111 222 37
Q ss_pred cCCCeec-CHHHHHHHHHHHHHHc
Q 036612 74 NLGWKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 74 ~lg~~~~-~l~e~i~~~~~~~~~~ 96 (102)
.+||+|+ +++++|+++++|++++
T Consensus 309 ~lg~~p~~~~~~~~~~~~~~~~~~ 332 (338)
T PRK10675 309 ELNWRVTRTLDEMAQDTWHWQSRH 332 (338)
T ss_pred HhCCCCcCcHHHHHHHHHHHHHhh
Confidence 7899999 9999999999999874
No 21
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=99.36 E-value=4.8e-12 Score=86.43 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=67.8
Q ss_pred CCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcCCC----cC-CCcc-------cCCC--cCcC
Q 036612 11 KNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFLNY----DY-SKSF-------TKVD--EGNL 75 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p~~----~~-p~~~-------~~~~--~~~l 75 (102)
..++|+||+|+|+++..++++...++.|+++ ++.+|+.|+++.+.+.++.. .. +... .+.+ .+.|
T Consensus 212 ~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l 291 (317)
T TIGR01181 212 QVRDWLYVEDHCRAIYLVLEKGRVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKREL 291 (317)
T ss_pred eEEeeEEHHHHHHHHHHHHcCCCCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHh
Confidence 5689999999999999999865444489886 46899999999999998631 11 1110 1122 3679
Q ss_pred CCeec-CHHHHHHHHHHHHHHcCC
Q 036612 76 GWKYR-PLEESIHDSDKNYEESGI 98 (102)
Q Consensus 76 g~~~~-~l~e~i~~~~~~~~~~~~ 98 (102)
||+|+ +++++++++++|++++++
T Consensus 292 G~~p~~~~~~~i~~~~~~~~~~~~ 315 (317)
T TIGR01181 292 GWAPKYTFEEGLRKTVQWYLDNEW 315 (317)
T ss_pred CCCCCCcHHHHHHHHHHHHHhccC
Confidence 99998 999999999999988764
No 22
>PLN02206 UDP-glucuronate decarboxylase
Probab=99.34 E-value=4.9e-12 Score=91.43 Aligned_cols=85 Identities=14% Similarity=0.209 Sum_probs=65.9
Q ss_pred CCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcC-CCcC---CCcc-------cCCC--cCcCC
Q 036612 11 KNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFL-NYDY---SKSF-------TKVD--EGNLG 76 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p-~~~~---p~~~-------~~~~--~~~lg 76 (102)
..++|+||+|+|++++.++++. ..|.||++ ++.+|++|+++.+++.++ +..+ |... .+.+ +++||
T Consensus 326 ~~rdfi~V~Dva~ai~~a~e~~-~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~~~~~~~~~~d~sKa~~~LG 404 (442)
T PLN02206 326 QTRSFQFVSDLVEGLMRLMEGE-HVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLG 404 (442)
T ss_pred EEEeEEeHHHHHHHHHHHHhcC-CCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCCCCCccccccCHHHHHHHcC
Confidence 4789999999999999999764 34589887 578999999999999873 2211 2111 1222 47799
Q ss_pred Ceec-CHHHHHHHHHHHHHHc
Q 036612 77 WKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 77 ~~~~-~l~e~i~~~~~~~~~~ 96 (102)
|+|+ +++|+|+++++|+++.
T Consensus 405 w~P~~~l~egl~~~~~~~~~~ 425 (442)
T PLN02206 405 WEPKVSLRQGLPLMVKDFRQR 425 (442)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 9999 9999999999999874
No 23
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=99.34 E-value=4.2e-12 Score=88.60 Aligned_cols=87 Identities=20% Similarity=0.386 Sum_probs=65.2
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCC--CCc-cEEEec-C-cccHHHHHHHHHHHcC---CCc----------CCCc-----
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPE--AKR-RYICTS-F-AIRMQALAVKIKIMFL---NYD----------YSKS----- 66 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~-~-~~s~~ei~~~i~~~~p---~~~----------~p~~----- 66 (102)
...++||||+|+|++++.+++++. ..| .||+++ + .+|++|+++.|.+.+. .+. .+..
T Consensus 218 ~~~r~~i~v~D~a~a~~~~~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (347)
T PRK11908 218 SQKRAFTDIDDGIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGK 297 (347)
T ss_pred ceeeccccHHHHHHHHHHHHhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCc
Confidence 467899999999999999998753 334 799875 3 6999999999988653 220 0110
Q ss_pred -c-------cCCC--cCcCCCeec-CHHHHHHHHHHHHHHc
Q 036612 67 -F-------TKVD--EGNLGWKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 67 -~-------~~~~--~~~lg~~~~-~l~e~i~~~~~~~~~~ 96 (102)
. .+.+ .+.|||+|+ +++++|+++++|+++.
T Consensus 298 ~~~~~~~~~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~ 338 (347)
T PRK11908 298 GYQDVQNRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGH 338 (347)
T ss_pred CcchhccccCChHHHHHHcCCCCCCcHHHHHHHHHHHHHHH
Confidence 0 0111 468999999 9999999999999864
No 24
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=99.33 E-value=6e-12 Score=90.84 Aligned_cols=85 Identities=14% Similarity=0.219 Sum_probs=65.9
Q ss_pred CCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcCC-Cc--C-CCcc-------cCCC--cCcCC
Q 036612 11 KNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFLN-YD--Y-SKSF-------TKVD--EGNLG 76 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p~-~~--~-p~~~-------~~~~--~~~lg 76 (102)
..++||||+|+|++++.+++.. ..|.||++ ++.+|+.|+++.|.+.++. .. . |... .+.+ .+.||
T Consensus 327 ~~rdfi~V~Dva~ai~~~~~~~-~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~~~~~~~~~~~d~~Ka~~~LG 405 (436)
T PLN02166 327 QTRSFQYVSDLVDGLVALMEGE-HVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNTADDPHKRKPDISKAKELLN 405 (436)
T ss_pred eEEeeEEHHHHHHHHHHHHhcC-CCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCCCCCCccccccCHHHHHHHcC
Confidence 5799999999999999999754 34589887 5779999999999998752 11 1 2111 1222 36799
Q ss_pred Ceec-CHHHHHHHHHHHHHHc
Q 036612 77 WKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 77 ~~~~-~l~e~i~~~~~~~~~~ 96 (102)
|+|+ +++++|+++++|++++
T Consensus 406 w~P~~sl~egl~~~i~~~~~~ 426 (436)
T PLN02166 406 WEPKISLREGLPLMVSDFRNR 426 (436)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 9999 9999999999999864
No 25
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=99.33 E-value=5.3e-12 Score=88.05 Aligned_cols=87 Identities=18% Similarity=0.210 Sum_probs=66.1
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEec-CcccHHHHHHHHHHHcCCC---cCC---------Ccc-------cC
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICTS-FAIRMQALAVKIKIMFLNY---DYS---------KSF-------TK 69 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~-~~~s~~ei~~~i~~~~p~~---~~p---------~~~-------~~ 69 (102)
+..++||||+|+|++++.+++....++.||+++ +.+|+.++++.+.+.++.. ..+ ... .|
T Consensus 228 ~~~~~~v~v~D~a~a~~~~l~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d 307 (352)
T PRK10084 228 DQIRDWLYVEDHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGHDRRYAID 307 (352)
T ss_pred CeEEeeEEHHHHHHHHHHHHhcCCCCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCCCCceeeeC
Confidence 568999999999999999998654445899874 6799999999998876421 001 000 12
Q ss_pred CC--cCcCCCeec-CHHHHHHHHHHHHHHc
Q 036612 70 VD--EGNLGWKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 70 ~~--~~~lg~~~~-~l~e~i~~~~~~~~~~ 96 (102)
.+ ++.|||+|+ +++++|+++++|+++.
T Consensus 308 ~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~ 337 (352)
T PRK10084 308 ASKISRELGWKPQETFESGIRKTVEWYLAN 337 (352)
T ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHhC
Confidence 22 367999999 9999999999999874
No 26
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=99.33 E-value=5.9e-12 Score=94.69 Aligned_cols=91 Identities=14% Similarity=0.219 Sum_probs=69.1
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCC--CCc-cEEEec-C-cccHHHHHHHHHHHcCC----CcCCCcc-------------
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPE--AKR-RYICTS-F-AIRMQALAVKIKIMFLN----YDYSKSF------------- 67 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~-~-~~s~~ei~~~i~~~~p~----~~~p~~~------------- 67 (102)
...++||||+|+|++++++++++. ..| .||+++ + .+|++|+++.+.+..+. ..+|...
T Consensus 532 ~~~rd~i~v~Dva~a~~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (660)
T PRK08125 532 KQKRCFTDIRDGIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGK 611 (660)
T ss_pred ceeeceeeHHHHHHHHHHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCcccccccccccccccc
Confidence 457999999999999999998753 235 798875 3 69999999999998752 1222110
Q ss_pred ---------cCCC--cCcCCCeec-CHHHHHHHHHHHHHHcCCCC
Q 036612 68 ---------TKVD--EGNLGWKYR-PLEESIHDSDKNYEESGILH 100 (102)
Q Consensus 68 ---------~~~~--~~~lg~~~~-~l~e~i~~~~~~~~~~~~~~ 100 (102)
.+.+ ++.|||+|+ +++|+|+++++|+++..-+.
T Consensus 612 ~~~~~~~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~~~ 656 (660)
T PRK08125 612 GYQDVEHRKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVDLT 656 (660)
T ss_pred ccccccccCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhccccc
Confidence 0111 477999999 99999999999999877654
No 27
>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]
Probab=99.31 E-value=1.1e-11 Score=84.40 Aligned_cols=87 Identities=25% Similarity=0.329 Sum_probs=66.7
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHc----CCCcC-------CCccc-C------C
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMF----LNYDY-------SKSFT-K------V 70 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~----p~~~~-------p~~~~-~------~ 70 (102)
-..|+|+||+|+++|+-+++++.+.+.+||++ +...+..|+++.|.+.+ |.... +.+.. | .
T Consensus 218 ~~~rs~l~veD~~ea~~~v~~Kg~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~ 297 (331)
T KOG0747|consen 218 LQTRSYLYVEDVSEAFKAVLEKGELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDD 297 (331)
T ss_pred ccceeeEeHHHHHHHHHHHHhcCCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccH
Confidence 46789999999999999999986665699887 56799999998888865 32211 11110 1 1
Q ss_pred C-cCcCCCeec-CHHHHHHHHHHHHHHc
Q 036612 71 D-EGNLGWKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 71 ~-~~~lg~~~~-~l~e~i~~~~~~~~~~ 96 (102)
+ .+.|||+|+ |+++||+.+++|+.++
T Consensus 298 eKik~LGw~~~~p~~eGLrktie~y~~~ 325 (331)
T KOG0747|consen 298 EKIKKLGWRPTTPWEEGLRKTIEWYTKN 325 (331)
T ss_pred HHHHhcCCcccCcHHHHHHHHHHHHHhh
Confidence 1 268999999 9999999999999875
No 28
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=99.28 E-value=2.2e-11 Score=83.18 Aligned_cols=87 Identities=16% Similarity=0.270 Sum_probs=65.9
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcCC---CcC-CCcc-------cCCC-cCcCC
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFLN---YDY-SKSF-------TKVD-EGNLG 76 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p~---~~~-p~~~-------~~~~-~~~lg 76 (102)
...++||||+|+|++++.+++.....+.||++ ++.+|+.|+++.+++.++. +.. +... .+.+ .+.||
T Consensus 200 ~~~~~~i~v~Dv~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lg 279 (306)
T PLN02725 200 SPLREFLHVDDLADAVVFLMRRYSGAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSSKLRSLG 279 (306)
T ss_pred CeeeccccHHHHHHHHHHHHhccccCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecCCCCCcccccccCHHHHHHhC
Confidence 44679999999999999999875444578886 5689999999999998742 111 1111 1222 25689
Q ss_pred Ceec-CHHHHHHHHHHHHHHc
Q 036612 77 WKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 77 ~~~~-~l~e~i~~~~~~~~~~ 96 (102)
|+|+ +++|+|+++++|++++
T Consensus 280 ~~p~~~~~~~l~~~~~~~~~~ 300 (306)
T PLN02725 280 WDPKFSLKDGLQETYKWYLEN 300 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHhh
Confidence 9999 9999999999999875
No 29
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=99.28 E-value=2.4e-11 Score=83.18 Aligned_cols=83 Identities=18% Similarity=0.125 Sum_probs=64.4
Q ss_pred CCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcCC---C---cCCCcc---------cCCC--c
Q 036612 11 KNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFLN---Y---DYSKSF---------TKVD--E 72 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p~---~---~~p~~~---------~~~~--~ 72 (102)
..++|+||+|+|++++.++.. ...+.||++ ++++|+.|+++.+.+.++. + +.|... .+.+ +
T Consensus 212 ~~~~~i~v~D~a~~i~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 290 (314)
T TIGR02197 212 QLRDFVYVKDVVDVNLWLLEN-GVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLR 290 (314)
T ss_pred ceeeeEEHHHHHHHHHHHHhc-ccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHH
Confidence 458999999999999999987 444589886 4789999999999998752 1 123221 1111 4
Q ss_pred CcCCCeec-CHHHHHHHHHHHHH
Q 036612 73 GNLGWKYR-PLEESIHDSDKNYE 94 (102)
Q Consensus 73 ~~lg~~~~-~l~e~i~~~~~~~~ 94 (102)
+.+||+|+ +++|+|+++++|++
T Consensus 291 ~~l~~~p~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 291 AAGYYGPFTTLEEGVKDYVQWLL 313 (314)
T ss_pred HhcCCCCcccHHHHHHHHHHHHh
Confidence 67899999 99999999999975
No 30
>PLN02572 UDP-sulfoquinovose synthase
Probab=99.26 E-value=1.8e-11 Score=88.45 Aligned_cols=87 Identities=16% Similarity=0.199 Sum_probs=64.3
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCc---cEEEecCcccHHHHHHHHHHH---cCC-Cc---CCCc--c-------cCC
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKR---RYICTSFAIRMQALAVKIKIM---FLN-YD---YSKS--F-------TKV 70 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~---~~~~~~~~~s~~ei~~~i~~~---~p~-~~---~p~~--~-------~~~ 70 (102)
.+.|+||||+|+|++++++++.....| .||++++.+|+.|+++.+.+. .+. .+ .|.. . .|.
T Consensus 306 ~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs~~~si~el~~~i~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~ 385 (442)
T PLN02572 306 GQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFTEQFSVNELAKLVTKAGEKLGLDVEVISVPNPRVEAEEHYYNAKH 385 (442)
T ss_pred CEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCCCceeHHHHHHHHHHHHHhhCCCCCeeeCCCCcccccccccCccH
Confidence 466899999999999999998653333 478877789999999999998 541 11 1211 1 122
Q ss_pred C-cCcCCCeec----CHHHHHHHHHHHHHHc
Q 036612 71 D-EGNLGWKYR----PLEESIHDSDKNYEES 96 (102)
Q Consensus 71 ~-~~~lg~~~~----~l~e~i~~~~~~~~~~ 96 (102)
+ .++|||+|+ ++++++.+++.||+++
T Consensus 386 ~k~~~LGw~p~~~~~~l~~~l~~~~~~~~~~ 416 (442)
T PLN02572 386 TKLCELGLEPHLLSDSLLDSLLNFAVKYKDR 416 (442)
T ss_pred HHHHHcCCCCCCcHHHHHHHHHHHHHHHHhh
Confidence 2 245999988 6889999999999864
No 31
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=99.26 E-value=2.3e-11 Score=83.50 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=62.2
Q ss_pred CCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcCC--C---cCCCcc---------cCCC-cCc
Q 036612 11 KNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFLN--Y---DYSKSF---------TKVD-EGN 74 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p~--~---~~p~~~---------~~~~-~~~ 74 (102)
..++|+||+|+|++++.++++. .++.||++ ++.+|+.|+++.+.+..+. + +.|... .+.+ .+.
T Consensus 207 ~~r~~i~v~D~a~a~~~~~~~~-~~~~yni~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 285 (308)
T PRK11150 207 FKRDFVYVGDVAAVNLWFWENG-VSGIFNCGTGRAESFQAVADAVLAYHKKGEIEYIPFPDKLKGRYQAFTQADLTKLRA 285 (308)
T ss_pred eeeeeeeHHHHHHHHHHHHhcC-CCCeEEcCCCCceeHHHHHHHHHHHhCCCcceeccCccccccccceecccCHHHHHh
Confidence 3689999999999999999864 34589986 5679999999999998752 1 123211 1111 245
Q ss_pred CCCeec--CHHHHHHHHHHHHH
Q 036612 75 LGWKYR--PLEESIHDSDKNYE 94 (102)
Q Consensus 75 lg~~~~--~l~e~i~~~~~~~~ 94 (102)
+||+|+ +++++|+++++|+.
T Consensus 286 ~g~~p~~~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 286 AGYDKPFKTVAEGVAEYMAWLN 307 (308)
T ss_pred cCCCCCCCCHHHHHHHHHHHhh
Confidence 799874 99999999999975
No 32
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=99.24 E-value=4.6e-11 Score=89.89 Aligned_cols=88 Identities=23% Similarity=0.252 Sum_probs=67.3
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcCCC-----cC-CCcc-------cCCC-cCc
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFLNY-----DY-SKSF-------TKVD-EGN 74 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p~~-----~~-p~~~-------~~~~-~~~ 74 (102)
...++||||+|+|++++.+++....++.||++ ++.+|+.|+++.+.+.++.. .. +... .+.+ .+.
T Consensus 220 ~~~r~~ihV~Dva~a~~~~l~~~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~~ 299 (668)
T PLN02260 220 SNVRSYLYCEDVAEAFEVVLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLKK 299 (668)
T ss_pred CceEeeEEHHHHHHHHHHHHhcCCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHHH
Confidence 35689999999999999999876555689987 47899999999999987521 11 1111 1222 256
Q ss_pred CCCeec-CHHHHHHHHHHHHHHcC
Q 036612 75 LGWKYR-PLEESIHDSDKNYEESG 97 (102)
Q Consensus 75 lg~~~~-~l~e~i~~~~~~~~~~~ 97 (102)
|||+|+ +++|+|+++++|+++.+
T Consensus 300 lGw~p~~~~~egl~~~i~w~~~~~ 323 (668)
T PLN02260 300 LGWQERTSWEEGLKKTMEWYTSNP 323 (668)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCh
Confidence 999999 99999999999999754
No 33
>PLN02583 cinnamoyl-CoA reductase
Probab=99.24 E-value=3.6e-11 Score=82.59 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=52.5
Q ss_pred CCCcccCCCCCCceeHHHHHHHHHHHhcCCCCCccEEEecCccc-HHHHHHHHHHHcCCCcCCC
Q 036612 3 DGNESLEDKNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIR-MQALAVKIKIMFLNYDYSK 65 (102)
Q Consensus 3 g~~~~~~~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s-~~ei~~~i~~~~p~~~~p~ 65 (102)
|..+.++++..+||||+|||+||++|++.+...|+|+|+++..+ +.++++++++.+|.+++|.
T Consensus 207 ~~~~~~~~~~~~~v~V~Dva~a~~~al~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 270 (297)
T PLN02583 207 GAAQMYENGVLVTVDVNFLVDAHIRAFEDVSSYGRYLCFNHIVNTEEDAVKLAQMLSPLIPSPP 270 (297)
T ss_pred CCcccCcccCcceEEHHHHHHHHHHHhcCcccCCcEEEecCCCccHHHHHHHHHHhCCCCCCCC
Confidence 44455667778999999999999999998877779999877655 6789999999999887765
No 34
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=99.23 E-value=4.9e-11 Score=84.37 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=65.7
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcCC-Cc---CCCc------ccCCC--cCcCC
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFLN-YD---YSKS------FTKVD--EGNLG 76 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p~-~~---~p~~------~~~~~--~~~lg 76 (102)
+..++||||+|+|++++.+++.. ..+.||++ ++.+|++|+++.+.+..+. .+ .|.. ..|.+ .++||
T Consensus 233 ~~~r~~i~v~D~a~ai~~~~~~~-~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~d~sk~~~~lg 311 (370)
T PLN02695 233 KQTRSFTFIDECVEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPEGVRGRNSDNTLIKEKLG 311 (370)
T ss_pred CeEEeEEeHHHHHHHHHHHHhcc-CCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCCCCccccccCHHHHHHhcC
Confidence 45789999999999999988764 34589887 4789999999999887652 21 1211 11222 46789
Q ss_pred Ceec-CHHHHHHHHHHHHHHc
Q 036612 77 WKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 77 ~~~~-~l~e~i~~~~~~~~~~ 96 (102)
|+|+ +++++|+++++|+++.
T Consensus 312 w~p~~~l~e~i~~~~~~~~~~ 332 (370)
T PLN02695 312 WAPTMRLKDGLRITYFWIKEQ 332 (370)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 9999 9999999999999864
No 35
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=99.18 E-value=8.1e-11 Score=80.60 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=63.8
Q ss_pred CCCCceeHHHHHHHHHHHhcCC---CCCccEEEe-cCcccHHHHHHHHHHHcCC-Cc---CCCcc-------cCCC--cC
Q 036612 11 KNRPLVDLRDVADVILVVYEKP---EAKRRYICT-SFAIRMQALAVKIKIMFLN-YD---YSKSF-------TKVD--EG 73 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~a~~~~---~~~~~~~~~-~~~~s~~ei~~~i~~~~p~-~~---~p~~~-------~~~~--~~ 73 (102)
..++|||++|+|++++.++... ..++.|+++ ++.+|++|+++.+++.++. .+ .+... .+.+ .+
T Consensus 224 ~~~~~v~~~D~a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (328)
T TIGR01179 224 CVRDYIHVMDLADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRPGDPASLVADASKIRR 303 (328)
T ss_pred eEEeeeeHHHHHHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCCccccchhcchHHHHH
Confidence 4579999999999999999752 223489886 5789999999999998853 21 12111 1222 36
Q ss_pred cCCCeec-C-HHHHHHHHHHHHHH
Q 036612 74 NLGWKYR-P-LEESIHDSDKNYEE 95 (102)
Q Consensus 74 ~lg~~~~-~-l~e~i~~~~~~~~~ 95 (102)
.|||+|+ + ++++|+++++|+.+
T Consensus 304 ~lg~~p~~~~l~~~~~~~~~~~~~ 327 (328)
T TIGR01179 304 ELGWQPKYTDLEIIIKTAWRWESR 327 (328)
T ss_pred HhCCCCCcchHHHHHHHHHHHHhc
Confidence 7899999 6 99999999999876
No 36
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=99.17 E-value=8.9e-11 Score=80.25 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=66.7
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEec-CcccHHHHHHHHHHHcCCC---c-CCCcc-------cCCC--cCcC
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICTS-FAIRMQALAVKIKIMFLNY---D-YSKSF-------TKVD--EGNL 75 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~-~~~s~~ei~~~i~~~~p~~---~-~p~~~-------~~~~--~~~l 75 (102)
.+.|+|+||.|++++.+++++++.. +.+|+++ +.+|+.|+++++.+...+. . .+... .|.. ++.|
T Consensus 233 ~qtRSF~yvsD~Vegll~Lm~s~~~-~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~~~Ddp~kR~pDit~ake~L 311 (350)
T KOG1429|consen 233 KQTRSFQYVSDLVEGLLRLMESDYR-GPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVENGPDDPRKRKPDITKAKEQL 311 (350)
T ss_pred cceEEEEeHHHHHHHHHHHhcCCCc-CCcccCCccceeHHHHHHHHHHHcCCCcceeecCCCCCCccccCccHHHHHHHh
Confidence 4789999999999999999987654 3588874 6899999999999988321 1 11111 1222 4789
Q ss_pred CCeec-CHHHHHHHHHHHHHH
Q 036612 76 GWKYR-PLEESIHDSDKNYEE 95 (102)
Q Consensus 76 g~~~~-~l~e~i~~~~~~~~~ 95 (102)
||.|+ +|+|||..|+.|+++
T Consensus 312 gW~Pkv~L~egL~~t~~~fr~ 332 (350)
T KOG1429|consen 312 GWEPKVSLREGLPLTVTYFRE 332 (350)
T ss_pred CCCCCCcHHHhhHHHHHHHHH
Confidence 99999 999999999999986
No 37
>PRK05865 hypothetical protein; Provisional
Probab=99.16 E-value=1.2e-10 Score=89.63 Aligned_cols=86 Identities=9% Similarity=0.074 Sum_probs=63.6
Q ss_pred CCCCceeHHHHHHHHHHHhcCCCC-CccEEEe-cCcccHHHHHHHHHHHcCCC--cCC------C--------cccCCC-
Q 036612 11 KNRPLVDLRDVADVILVVYEKPEA-KRRYICT-SFAIRMQALAVKIKIMFLNY--DYS------K--------SFTKVD- 71 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~a~~~~~~-~~~~~~~-~~~~s~~ei~~~i~~~~p~~--~~p------~--------~~~~~~- 71 (102)
..++||||+|+|++++.+++.+.. ++.||++ ++.+|++|+++.+.+....+ +.+ . ...|.+
T Consensus 153 ~~~dfIhVdDVA~Ai~~aL~~~~~~ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sK 232 (854)
T PRK05865 153 RVVQVVHSDDAQRLLVRALLDTVIDSGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTL 232 (854)
T ss_pred ceEeeeeHHHHHHHHHHHHhCCCcCCCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHH
Confidence 356899999999999999975443 4489886 56799999999998753111 000 0 011222
Q ss_pred -cCcCCCeec-CHHHHHHHHHHHHHHc
Q 036612 72 -EGNLGWKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 72 -~~~lg~~~~-~l~e~i~~~~~~~~~~ 96 (102)
.+.|||+|+ +++++|+++++|++.+
T Consensus 233 ar~~LGw~P~~sLeeGL~dti~~~r~r 259 (854)
T PRK05865 233 LRDRWGFQPAWNAEECLEDFTLAVRGR 259 (854)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHhh
Confidence 477999999 9999999999999864
No 38
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=99.12 E-value=3.8e-10 Score=76.56 Aligned_cols=85 Identities=15% Similarity=0.070 Sum_probs=62.9
Q ss_pred cCCCCCCceeHHHHHHHHHHHhcCCC-CCccEEEe-cCcccHHHHHHHHHHHcCCCc--C--C-----------Cc----
Q 036612 8 LEDKNRPLVDLRDVADVILVVYEKPE-AKRRYICT-SFAIRMQALAVKIKIMFLNYD--Y--S-----------KS---- 66 (102)
Q Consensus 8 ~~~~~~~~v~V~Dva~a~v~a~~~~~-~~~~~~~~-~~~~s~~ei~~~i~~~~p~~~--~--p-----------~~---- 66 (102)
.++..++|+||+|+|++++.+++.+. .++.||++ ++.+|+.|+++.+.+.++... + | ..
T Consensus 176 ~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (287)
T TIGR01214 176 VDDQIGSPTYAKDLARVIAALLQRLARARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRP 255 (287)
T ss_pred ecCCCcCCcCHHHHHHHHHHHHhhccCCCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCC
Confidence 45677899999999999999998763 44589886 578999999999999875311 0 0 00
Q ss_pred ---ccCCC--cCcCCCeecCHHHHHHHHHHH
Q 036612 67 ---FTKVD--EGNLGWKYRPLEESIHDSDKN 92 (102)
Q Consensus 67 ---~~~~~--~~~lg~~~~~l~e~i~~~~~~ 92 (102)
..|.+ ++.|||++.+++++|++++++
T Consensus 256 ~~~~~d~~~~~~~lg~~~~~~~~~l~~~~~~ 286 (287)
T TIGR01214 256 AYSVLDNTKLVKTLGTPLPHWREALRAYLQE 286 (287)
T ss_pred CccccchHHHHHHcCCCCccHHHHHHHHHhh
Confidence 01112 477999777999999998764
No 39
>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.2e-10 Score=75.07 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=64.6
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cC--cccHHHHHHHHHHHcC---CCcC--------CCcccCCC-cCc
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICT-SF--AIRMQALAVKIKIMFL---NYDY--------SKSFTKVD-EGN 74 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~--~~s~~ei~~~i~~~~p---~~~~--------p~~~~~~~-~~~ 74 (102)
...|.|+|++|+|++++..+..-+.-+-.|++ ++ .+|++|+++.+.+.+. ++.. ++..++++ .+.
T Consensus 206 ~PlRqFiys~DLA~l~i~vlr~Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK~DGq~kKtasnsKL~s 285 (315)
T KOG1431|consen 206 SPLRQFIYSDDLADLFIWVLREYEGVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTKSDGQFKKTASNSKLRS 285 (315)
T ss_pred ChHHHHhhHhHHHHHHHHHHHhhcCccceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccCCCCCcccccchHHHHH
Confidence 45689999999999999999865443445554 55 7999999999999873 2211 11222333 377
Q ss_pred CCCeec--CHHHHHHHHHHHHHHc
Q 036612 75 LGWKYR--PLEESIHDSDKNYEES 96 (102)
Q Consensus 75 lg~~~~--~l~e~i~~~~~~~~~~ 96 (102)
|+|.|+ +|+++|.++++||.++
T Consensus 286 l~pd~~ft~l~~ai~~t~~Wy~~N 309 (315)
T KOG1431|consen 286 LLPDFKFTPLEQAISETVQWYLDN 309 (315)
T ss_pred hCCCcccChHHHHHHHHHHHHHHh
Confidence 899888 6999999999999874
No 40
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.98 E-value=3.7e-09 Score=72.17 Aligned_cols=87 Identities=23% Similarity=0.311 Sum_probs=66.7
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEec-C-cccHHHHHHHHHHHcCCC-c----CCC--c-c------cCCC--
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICTS-F-AIRMQALAVKIKIMFLNY-D----YSK--S-F------TKVD-- 71 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~-~-~~s~~ei~~~i~~~~p~~-~----~p~--~-~------~~~~-- 71 (102)
...++|+||+|+|++++.+++++... +|++++ . .++++|+++.+.+.++.. + .+. . . .+..
T Consensus 207 ~~~~~~i~v~D~a~~~~~~~~~~~~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (314)
T COG0451 207 SQTRDFVYVDDVADALLLALENPDGG-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKA 285 (314)
T ss_pred ceeEeeEeHHHHHHHHHHHHhCCCCc-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHH
Confidence 34468999999999999999987655 898875 4 799999999999987532 1 111 0 0 1111
Q ss_pred cCcCCCeec-CHHHHHHHHHHHHHHcC
Q 036612 72 EGNLGWKYR-PLEESIHDSDKNYEESG 97 (102)
Q Consensus 72 ~~~lg~~~~-~l~e~i~~~~~~~~~~~ 97 (102)
.+.|||.|+ ++++++.+++.|+....
T Consensus 286 ~~~lg~~p~~~~~~~i~~~~~~~~~~~ 312 (314)
T COG0451 286 RAALGWEPKVSLEEGLADTLEWLLKKL 312 (314)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhh
Confidence 368999998 99999999999987653
No 41
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=98.98 E-value=1.3e-09 Score=75.56 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=69.7
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCc---cEEEe-cCcccHHHHHHHHHHHcCC-Cc---CCCcccCCC---------c
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKR---RYICT-SFAIRMQALAVKIKIMFLN-YD---YSKSFTKVD---------E 72 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~---~~~~~-~~~~s~~ei~~~i~~~~p~-~~---~p~~~~~~~---------~ 72 (102)
+..|+|+||.|+|++|+.|+.+....+ .||++ +...++.+|+..+.+..+. ++ +|.+..|.. .
T Consensus 231 t~vrdyi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~R~gdv~~~ya~~~~a~ 310 (343)
T KOG1371|consen 231 TIVRDYIHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPRRNGDVAFVYANPSKAQ 310 (343)
T ss_pred CeeecceeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCCCCCCceeeeeChHHHH
Confidence 788999999999999999998866422 58876 5678999999999998763 22 233322321 4
Q ss_pred CcCCCeec-CHHHHHHHHHHHHHHcC
Q 036612 73 GNLGWKYR-PLEESIHDSDKNYEESG 97 (102)
Q Consensus 73 ~~lg~~~~-~l~e~i~~~~~~~~~~~ 97 (102)
++|||++. .++|++++.++|..++-
T Consensus 311 ~elgwk~~~~iee~c~dlw~W~~~np 336 (343)
T KOG1371|consen 311 RELGWKAKYGLQEMLKDLWRWQKQNP 336 (343)
T ss_pred HHhCCccccCHHHHHHHHHHHHhcCC
Confidence 89999999 99999999999998764
No 42
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=98.89 E-value=8.7e-09 Score=70.24 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=65.7
Q ss_pred CCCCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHc--CC-CcCCCcc------------cCCC-
Q 036612 9 EDKNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMF--LN-YDYSKSF------------TKVD- 71 (102)
Q Consensus 9 ~~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~--p~-~~~p~~~------------~~~~- 71 (102)
..++++|||++|+++++..++++.+..|.||++ ..+++.+++.+.+.+.+ |. +++|... ++.+
T Consensus 189 GrQ~~SWIhieD~v~~I~fll~~~~lsGp~N~taP~PV~~~~F~~al~r~l~RP~~~~vP~~~~rl~LGe~a~~lL~gQr 268 (297)
T COG1090 189 GRQWFSWIHIEDLVNAILFLLENEQLSGPFNLTAPNPVRNKEFAHALGRALHRPAILPVPSFALRLLLGEMADLLLGGQR 268 (297)
T ss_pred CCceeeeeeHHHHHHHHHHHHhCcCCCCcccccCCCcCcHHHHHHHHHHHhCCCccccCcHHHHHHHhhhhHHHHhccch
Confidence 468899999999999999999998888999986 57899999999999987 33 3566432 1222
Q ss_pred -----cCcCCCeec--CHHHHHHHHHH
Q 036612 72 -----EGNLGWKYR--PLEESIHDSDK 91 (102)
Q Consensus 72 -----~~~lg~~~~--~l~e~i~~~~~ 91 (102)
....||+|+ ++++++++.++
T Consensus 269 vlP~kl~~aGF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 269 VLPKKLEAAGFQFQYPDLEEALADILK 295 (297)
T ss_pred hhHHHHHHCCCeeecCCHHHHHHHHHh
Confidence 145577776 99999998764
No 43
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=98.85 E-value=6.5e-09 Score=70.37 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=57.8
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcCC---CcCCCccc------------CC---
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFLN---YDYSKSFT------------KV--- 70 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p~---~~~p~~~~------------~~--- 70 (102)
+..++||||+|+|+++..+++++...|.|+++ ++.+|+.|+++.+.+.++. .++|.+.. ..
T Consensus 192 ~~~~~~i~v~Dva~~i~~~l~~~~~~g~~~~~~~~~~s~~di~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 271 (292)
T TIGR01777 192 RQWFSWIHIEDLVQLILFALENASISGPVNATAPEPVRNKEFAKALARALHRPAFFPVPAFVLRALLGEMADLLLKGQRV 271 (292)
T ss_pred CcccccEeHHHHHHHHHHHhcCcccCCceEecCCCccCHHHHHHHHHHHhCCCCcCcCCHHHHHHHhchhhHHHhCCccc
Confidence 56689999999999999999886665689886 5789999999999998752 23443210 11
Q ss_pred --C-cCcCCCeec--CHHHHH
Q 036612 71 --D-EGNLGWKYR--PLEESI 86 (102)
Q Consensus 71 --~-~~~lg~~~~--~l~e~i 86 (102)
+ .+.+||+|+ +++|++
T Consensus 272 ~~~~~~~~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 272 LPEKLLEAGFQFQYPDLDEAL 292 (292)
T ss_pred ccHHHHhcCCeeeCcChhhcC
Confidence 1 256999998 588864
No 44
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=98.80 E-value=4.8e-09 Score=72.94 Aligned_cols=79 Identities=11% Similarity=0.004 Sum_probs=57.6
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHHHHcCCCcCCCcc--------cCCC--cCcCCCee
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYDYSKSF--------TKVD--EGNLGWKY 79 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~~~~p~~~~p~~~--------~~~~--~~~lg~~~ 79 (102)
...|+|+||+|+|++++.++++...+..|++++..+++.|+++.+.+..+....+... .+.+ ++.|||.|
T Consensus 196 ~~~r~~i~v~D~a~a~~~al~~~~~~~~~~~~~~~~sv~el~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~~ 275 (324)
T TIGR03589 196 RMTRFWITLEQGVNFVLKSLERMLGGEIFVPKIPSMKITDLAEAMAPECPHKIVGIRPGEKLHEVMITEDDARHTYELGD 275 (324)
T ss_pred CceEeeEEHHHHHHHHHHHHhhCCCCCEEccCCCcEEHHHHHHHHHhhCCeeEeCCCCCchhHhhhcChhhhhhhcCCCC
Confidence 5678999999999999999986432236765567799999999999976421111111 1222 47799999
Q ss_pred c-CHHHHHHH
Q 036612 80 R-PLEESIHD 88 (102)
Q Consensus 80 ~-~l~e~i~~ 88 (102)
+ ++++++++
T Consensus 276 ~~~l~~~~~~ 285 (324)
T TIGR03589 276 YYAILPSISF 285 (324)
T ss_pred eEEEcccccc
Confidence 9 99999864
No 45
>PLN02686 cinnamoyl-CoA reductase
Probab=98.79 E-value=2.2e-08 Score=70.81 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=46.9
Q ss_pred CCCCcccCCCCCCceeHHHHHHHHHHHhcCC---CCCccEEEecCcccHHHHHHHHHHHcC
Q 036612 2 LDGNESLEDKNRPLVDLRDVADVILVVYEKP---EAKRRYICTSFAIRMQALAVKIKIMFL 59 (102)
Q Consensus 2 ~g~~~~~~~~~~~~v~V~Dva~a~v~a~~~~---~~~~~~~~~~~~~s~~ei~~~i~~~~p 59 (102)
+|..+.++++..+||||+|||+||++|++.. ..+++|+++++.+|++|+++.|.+.++
T Consensus 264 ~g~~~~~g~g~~~~v~V~Dva~A~~~al~~~~~~~~~~~yi~~g~~~s~~e~~~~i~~~~g 324 (367)
T PLN02686 264 KGAQEMLADGLLATADVERLAEAHVCVYEAMGNKTAFGRYICFDHVVSREDEAEELARQIG 324 (367)
T ss_pred cCCCccCCCCCcCeEEHHHHHHHHHHHHhccCCCCCCCcEEEeCCCccHHHHHHHHHHHcC
Confidence 3445555677789999999999999999853 233489777889999999999999985
No 46
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=98.60 E-value=1.8e-07 Score=64.45 Aligned_cols=82 Identities=12% Similarity=-0.014 Sum_probs=56.5
Q ss_pred CCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHc---C-CC------cCCC-----c-------ccC
Q 036612 13 RPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMF---L-NY------DYSK-----S-------FTK 69 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~---p-~~------~~p~-----~-------~~~ 69 (102)
+.+.+++|+++++..++..+...|.||++ ++.+|+.|+++.|.+.. + .. ++|. . .+|
T Consensus 188 ~~~~~~d~~~~~~~~~~~~~~~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld 267 (299)
T PRK09987 188 GAELLADCTAHAIRVALNKPEVAGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLN 267 (299)
T ss_pred CHHHHHHHHHHHHHHhhccCCCCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCC
Confidence 35566778888888888765444689886 57799999999987742 1 10 1110 0 012
Q ss_pred CC--cCcCCCeecCHHHHHHHHHHHHH
Q 036612 70 VD--EGNLGWKYRPLEESIHDSDKNYE 94 (102)
Q Consensus 70 ~~--~~~lg~~~~~l~e~i~~~~~~~~ 94 (102)
.+ .+.|||++.+++++|+++++.+.
T Consensus 268 ~~k~~~~lg~~~~~~~~~l~~~~~~~~ 294 (299)
T PRK09987 268 TEKFQQNFALVLPDWQVGVKRMLTELF 294 (299)
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHh
Confidence 22 36699998899999999998764
No 47
>KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism]
Probab=98.35 E-value=1.5e-06 Score=58.37 Aligned_cols=81 Identities=11% Similarity=0.212 Sum_probs=62.1
Q ss_pred CCCCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcC--C-CcCCCccc-------------CCC
Q 036612 9 EDKNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFL--N-YDYSKSFT-------------KVD 71 (102)
Q Consensus 9 ~~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p--~-~~~p~~~~-------------~~~ 71 (102)
..++++||||+|+|..+..|++++...|..|.. .+..+..|+++.+...+. . +++|.... ..+
T Consensus 208 G~Q~fpWIHv~DL~~li~~ale~~~v~GViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~pvP~fvvqA~fG~erA~~vLeGq 287 (315)
T KOG3019|consen 208 GQQWFPWIHVDDLVNLIYEALENPSVKGVINGVAPNPVRNGEFCQQLGSALSRPSWLPVPDFVVQALFGPERATVVLEGQ 287 (315)
T ss_pred CCeeeeeeehHHHHHHHHHHHhcCCCCceecccCCCccchHHHHHHHHHHhCCCcccCCcHHHHHHHhCccceeEEeeCC
Confidence 468899999999999999999998888888865 678999999999999874 2 35554311 111
Q ss_pred ------cCcCCCeec--CHHHHHHHH
Q 036612 72 ------EGNLGWKYR--PLEESIHDS 89 (102)
Q Consensus 72 ------~~~lg~~~~--~l~e~i~~~ 89 (102)
..++||+++ .+.+++++.
T Consensus 288 KV~Pqral~~Gf~f~yp~vk~Al~~i 313 (315)
T KOG3019|consen 288 KVLPQRALELGFEFKYPYVKDALRAI 313 (315)
T ss_pred cccchhHhhcCceeechHHHHHHHHH
Confidence 367899887 677777764
No 48
>CHL00194 ycf39 Ycf39; Provisional
Probab=98.31 E-value=1.7e-06 Score=59.89 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=42.5
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCc-cEEEec-CcccHHHHHHHHHHHcC
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKR-RYICTS-FAIRMQALAVKIKIMFL 59 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~-~~~~~~-~~~s~~ei~~~i~~~~p 59 (102)
+..++||||+|+|++++.+++.+...| .|++++ +.+|++|+++.+.+..+
T Consensus 171 ~~~~~~i~v~Dva~~~~~~l~~~~~~~~~~ni~g~~~~s~~el~~~~~~~~g 222 (317)
T CHL00194 171 STPISYIDTQDAAKFCLKSLSLPETKNKTFPLVGPKSWNSSEIISLCEQLSG 222 (317)
T ss_pred CCccCccCHHHHHHHHHHHhcCccccCcEEEecCCCccCHHHHHHHHHHHhC
Confidence 457899999999999999998765555 798864 68999999999999864
No 49
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=98.27 E-value=9.2e-07 Score=60.77 Aligned_cols=86 Identities=24% Similarity=0.212 Sum_probs=57.2
Q ss_pred cCCCCCCceeHHHHHHHHHHHhcCCCC----CccEEEe-cCcccHHHHHHHHHHHcCC-C----cCCCcc----------
Q 036612 8 LEDKNRPLVDLRDVADVILVVYEKPEA----KRRYICT-SFAIRMQALAVKIKIMFLN-Y----DYSKSF---------- 67 (102)
Q Consensus 8 ~~~~~~~~v~V~Dva~a~v~a~~~~~~----~~~~~~~-~~~~s~~ei~~~i~~~~p~-~----~~p~~~---------- 67 (102)
..+..+..+||.|+|++++.++++... .|.|+++ ++.+|+.|+++.+++.++. . +++...
T Consensus 176 ~~d~~~~p~~~~dlA~~i~~l~~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~ 255 (286)
T PF04321_consen 176 FDDQYRSPTYVDDLARVILELIEKNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRN 255 (286)
T ss_dssp ESSCEE--EEHHHHHHHHHHHHHHHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SB
T ss_pred eCCceeCCEEHHHHHHHHHHHHHhcccccccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCc
Confidence 457888999999999999999987532 4689776 5779999999999998741 1 111111
Q ss_pred --cCCC--cCcCCCeecCHHHHHHHHHHHH
Q 036612 68 --TKVD--EGNLGWKYRPLEESIHDSDKNY 93 (102)
Q Consensus 68 --~~~~--~~~lg~~~~~l~e~i~~~~~~~ 93 (102)
++.+ .+.||+++.+++++|+++++.+
T Consensus 256 ~~L~~~kl~~~~g~~~~~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 256 TSLDCRKLKNLLGIKPPPWREGLEELVKQY 285 (286)
T ss_dssp E-B--HHHHHCTTS---BHHHHHHHHHHHH
T ss_pred ccccHHHHHHccCCCCcCHHHHHHHHHHHh
Confidence 1111 3678999999999999999876
No 50
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=98.22 E-value=7e-06 Score=56.68 Aligned_cols=86 Identities=17% Similarity=0.275 Sum_probs=65.3
Q ss_pred CCCCCCceeHHHHHHHHHHHhcCCCCCccEEE-ecCcccHHHHHHHHHHHcC-CCc---------------------C-C
Q 036612 9 EDKNRPLVDLRDVADVILVVYEKPEAKRRYIC-TSFAIRMQALAVKIKIMFL-NYD---------------------Y-S 64 (102)
Q Consensus 9 ~~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~-~~~~~s~~ei~~~i~~~~p-~~~---------------------~-p 64 (102)
-+..|||=|..|-++++.+.++.+... -|++ +++..|++|++++..+..+ .+. + |
T Consensus 219 ldAkRDWG~A~DYVe~mwlmLQq~~Pd-dyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp 297 (345)
T COG1089 219 LDAKRDWGHAKDYVEAMWLMLQQEEPD-DYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDP 297 (345)
T ss_pred ccccccccchHHHHHHHHHHHccCCCC-ceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECc
Confidence 378999999999999999999987643 5765 5789999999999988765 111 0 1
Q ss_pred Ccc---------cCCC--cCcCCCeec-CHHHHHHHHHHHHHH
Q 036612 65 KSF---------TKVD--EGNLGWKYR-PLEESIHDSDKNYEE 95 (102)
Q Consensus 65 ~~~---------~~~~--~~~lg~~~~-~l~e~i~~~~~~~~~ 95 (102)
... .|.+ ++.|||+|+ +++|.+++++++-.+
T Consensus 298 ~~fRPaEV~~Llgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~ 340 (345)
T COG1089 298 RYFRPAEVDLLLGDPTKAKEKLGWRPEVSLEELVREMVEADLE 340 (345)
T ss_pred cccCchhhhhhcCCHHHHHHHcCCccccCHHHHHHHHHHHHHH
Confidence 000 0111 368999999 999999999987654
No 51
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=98.16 E-value=6.8e-06 Score=55.90 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=43.4
Q ss_pred CCCCCCceeHHHHHHHHHHHhcCCCCCc-cEEEe-cCcccHHHHHHHHHHHcC
Q 036612 9 EDKNRPLVDLRDVADVILVVYEKPEAKR-RYICT-SFAIRMQALAVKIKIMFL 59 (102)
Q Consensus 9 ~~~~~~~v~V~Dva~a~v~a~~~~~~~~-~~~~~-~~~~s~~ei~~~i~~~~p 59 (102)
+++.++|||++|+|+++..++..+...+ .|+++ ++.+|++|+++.+.+.++
T Consensus 162 g~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g 214 (285)
T TIGR03649 162 GDGKIPFVSADDIARVAYRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLG 214 (285)
T ss_pred CCCccCcccHHHHHHHHHHHhcCCCcCCCeEEeeCCccCCHHHHHHHHHHHhC
Confidence 4678899999999999999998765544 78765 578999999999999875
No 52
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.16 E-value=7.9e-06 Score=56.11 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=40.6
Q ss_pred CCCCCceeHHHHHHHHHHHhcC-------CCCCc-cEEEe-cCccc-HHHHHHHHHHHcC
Q 036612 10 DKNRPLVDLRDVADVILVVYEK-------PEAKR-RYICT-SFAIR-MQALAVKIKIMFL 59 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~-------~~~~~-~~~~~-~~~~s-~~ei~~~i~~~~p 59 (102)
....+||||+|||.||++|++. ....| +|+|+ ++++. +.++...+.+.++
T Consensus 210 ~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G 269 (280)
T PF01073_consen 210 NNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALG 269 (280)
T ss_pred CceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCC
Confidence 4568999999999999998753 23566 89887 56777 9999999999874
No 53
>PLN02996 fatty acyl-CoA reductase
Probab=97.97 E-value=1.3e-05 Score=58.95 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=41.2
Q ss_pred CCCCCceeHHHHHHHHHHHhcCC--C-CCc-cEEEe-c--CcccHHHHHHHHHHHcCCC
Q 036612 10 DKNRPLVDLRDVADVILVVYEKP--E-AKR-RYICT-S--FAIRMQALAVKIKIMFLNY 61 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~--~-~~~-~~~~~-~--~~~s~~ei~~~i~~~~p~~ 61 (102)
...+|||||+|||+|++.|+... . ..+ .||++ + .++|+.++++.+.+.+...
T Consensus 302 ~~~~D~v~Vddvv~a~l~a~~~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~ 360 (491)
T PLN02996 302 NSVLDVIPADMVVNAMIVAMAAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKN 360 (491)
T ss_pred CeecceecccHHHHHHHHHHHHhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhC
Confidence 56899999999999999998753 2 224 79886 4 4799999999999876433
No 54
>PLN02778 3,5-epimerase/4-reductase
Probab=97.84 E-value=5e-05 Score=52.46 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=39.5
Q ss_pred CCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcC
Q 036612 13 RPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFL 59 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p 59 (102)
.+|+||+|+++|++.+++... .|.||++ ++.+|+.|+++.+++.++
T Consensus 192 ~s~~yv~D~v~al~~~l~~~~-~g~yNigs~~~iS~~el~~~i~~~~~ 238 (298)
T PLN02778 192 NSMTILDELLPISIEMAKRNL-TGIYNFTNPGVVSHNEILEMYRDYID 238 (298)
T ss_pred CCCEEHHHHHHHHHHHHhCCC-CCeEEeCCCCcccHHHHHHHHHHHhC
Confidence 589999999999999997543 4689886 578999999999999985
No 55
>PRK12320 hypothetical protein; Provisional
Probab=97.83 E-value=6.1e-05 Score=57.65 Aligned_cols=77 Identities=9% Similarity=0.110 Sum_probs=52.9
Q ss_pred CCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcCCCcC-CC-----cccCCC--cCcCCCeec-C
Q 036612 12 NRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFLNYDY-SK-----SFTKVD--EGNLGWKYR-P 81 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p~~~~-p~-----~~~~~~--~~~lg~~~~-~ 81 (102)
...+|||+|+|++++.+++.+. .|.||++ ++.+|++|+++++....|...+ +. ...+.+ ...++|+|+ .
T Consensus 157 pI~vIyVdDvv~alv~al~~~~-~GiyNIG~~~~~Si~el~~~i~~~~p~~~~~~~~~~~~~~pdi~~a~~~~~w~~~~~ 235 (699)
T PRK12320 157 PIRVLHLDDLVRFLVLALNTDR-NGVVDLATPDTTNVVTAWRLLRSVDPHLRTRRVRSWEQLIPEVDIAAVQEDWNFEFG 235 (699)
T ss_pred ceEEEEHHHHHHHHHHHHhCCC-CCEEEEeCCCeeEHHHHHHHHHHhCCCccccccccHHHhCCCCchhhhhcCCCCcch
Confidence 3456899999999999998643 4589886 5789999999999887664321 11 112222 467789988 6
Q ss_pred HHH--HHHHH
Q 036612 82 LEE--SIHDS 89 (102)
Q Consensus 82 l~e--~i~~~ 89 (102)
++. .+.|+
T Consensus 236 ~~~~~~~~~~ 245 (699)
T PRK12320 236 WQATEAIVDT 245 (699)
T ss_pred HHHHHHHHhh
Confidence 643 45544
No 56
>PRK07201 short chain dehydrogenase; Provisional
Probab=97.78 E-value=6.2e-05 Score=56.66 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=42.0
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCc-cEEEe-cCcccHHHHHHHHHHHcC
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKR-RYICT-SFAIRMQALAVKIKIMFL 59 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~-~~~~~-~~~~s~~ei~~~i~~~~p 59 (102)
.+..++|||+|+|++++.+++.+...| .|+++ ++.+|+.|+++.+.+.++
T Consensus 217 ~~~~~~v~vddva~ai~~~~~~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g 268 (657)
T PRK07201 217 GGRTNIVPVDYVADALDHLMHKDGRDGQTFHLTDPKPQRVGDIYNAFARAAG 268 (657)
T ss_pred CCeeeeeeHHHHHHHHHHHhcCcCCCCCEEEeCCCCCCcHHHHHHHHHHHhC
Confidence 356789999999999999988665555 89887 478999999999999863
No 57
>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]
Probab=97.74 E-value=0.00021 Score=48.87 Aligned_cols=83 Identities=11% Similarity=0.208 Sum_probs=60.9
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEE-EecCcccHHHHHHHHHHHcCC-CcC---------------------CCc
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYI-CTSFAIRMQALAVKIKIMFLN-YDY---------------------SKS 66 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~-~~~~~~s~~ei~~~i~~~~p~-~~~---------------------p~~ 66 (102)
+..|||=|..|-++|+.+.+++.... -|. ++++..|++|+++..-...++ +.. |+-
T Consensus 249 ~a~RDWGhA~dYVEAMW~mLQ~d~Pd-DfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~kY 327 (376)
T KOG1372|consen 249 SALRDWGHAGDYVEAMWLMLQQDSPD-DFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPKY 327 (376)
T ss_pred hhhcccchhHHHHHHHHHHHhcCCCC-ceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEecccc
Confidence 57899999999999999999987664 465 468899999999876665442 110 000
Q ss_pred c---------cCCC--cCcCCCeec-CHHHHHHHHHHHH
Q 036612 67 F---------TKVD--EGNLGWKYR-PLEESIHDSDKNY 93 (102)
Q Consensus 67 ~---------~~~~--~~~lg~~~~-~l~e~i~~~~~~~ 93 (102)
. .|.+ ++.|||+|+ .++|-++++++.=
T Consensus 328 yRPtEVd~LqGdasKAk~~LgW~pkv~f~eLVkeMv~~D 366 (376)
T KOG1372|consen 328 YRPTEVDTLQGDASKAKKTLGWKPKVTFPELVKEMVASD 366 (376)
T ss_pred cCcchhhhhcCChHHHHHhhCCCCccCHHHHHHHHHHhH
Confidence 0 0111 488999999 9999999998653
No 58
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=97.72 E-value=0.00013 Score=50.60 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=38.4
Q ss_pred CCCCceeHHHHHHHHHHHhcCCCC---CccEEEec-CcccHHHHHHHHHH
Q 036612 11 KNRPLVDLRDVADVILVVYEKPEA---KRRYICTS-FAIRMQALAVKIKI 56 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~a~~~~~~---~~~~~~~~-~~~s~~ei~~~i~~ 56 (102)
...+|+||+|+|++++.++..+.. ++.|++++ +.+++.|+++.+.+
T Consensus 228 ~~~~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~ 277 (367)
T TIGR01746 228 LTEDLTPVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER 277 (367)
T ss_pred cccCcccHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH
Confidence 357899999999999999877653 33798865 78999999999988
No 59
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.00046 Score=47.63 Aligned_cols=85 Identities=16% Similarity=0.075 Sum_probs=62.5
Q ss_pred cCCCCCCceeHHHHHHHHHHHhcCCCCCccEEEec-CcccHHHHHHHHHHHcC---CCc--C-----C--Ccc-----cC
Q 036612 8 LEDKNRPLVDLRDVADVILVVYEKPEAKRRYICTS-FAIRMQALAVKIKIMFL---NYD--Y-----S--KSF-----TK 69 (102)
Q Consensus 8 ~~~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~-~~~s~~ei~~~i~~~~p---~~~--~-----p--~~~-----~~ 69 (102)
+-++..+.++++|+|+++..++......|.|++++ +.+||.|+++.|.+.+. ... + | ... ++
T Consensus 175 v~Dq~gsPt~~~dlA~~i~~ll~~~~~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~ 254 (281)
T COG1091 175 VDDQYGSPTYTEDLADAILELLEKEKEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLD 254 (281)
T ss_pred ECCeeeCCccHHHHHHHHHHHHhccccCcEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccc
Confidence 35788889999999999999998765556898765 56899999999999864 111 1 1 111 11
Q ss_pred CC--cCcCCCeecCHHHHHHHHHHH
Q 036612 70 VD--EGNLGWKYRPLEESIHDSDKN 92 (102)
Q Consensus 70 ~~--~~~lg~~~~~l~e~i~~~~~~ 92 (102)
.. .+.+|+++.+++++++++++.
T Consensus 255 ~~k~~~~~g~~~~~w~~~l~~~~~~ 279 (281)
T COG1091 255 TKKLEKAFGLSLPEWREALKALLDE 279 (281)
T ss_pred hHHHHHHhCCCCccHHHHHHHHHhh
Confidence 11 367899999999999998764
No 60
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=97.58 E-value=4.7e-05 Score=49.91 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=28.4
Q ss_pred CCCCCCceeHHHHHHHHHHHhcCCC-CCccEEEe
Q 036612 9 EDKNRPLVDLRDVADVILVVYEKPE-AKRRYICT 41 (102)
Q Consensus 9 ~~~~~~~v~V~Dva~a~v~a~~~~~-~~~~~~~~ 41 (102)
....++|+||+|+|++++.+++++. .+++||++
T Consensus 203 ~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~yNig 236 (236)
T PF01370_consen 203 GSQVRDFIHVDDLAEAIVAALENPKAAGGIYNIG 236 (236)
T ss_dssp SSCEEEEEEHHHHHHHHHHHHHHSCTTTEEEEES
T ss_pred CCCccceEEHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence 3678999999999999999999988 44489875
No 61
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.56 E-value=0.00017 Score=51.63 Aligned_cols=46 Identities=9% Similarity=-0.107 Sum_probs=38.6
Q ss_pred CceeHHHHHHHHHHHhcCCCCCc-cEEEec--CcccHHHHHHHHHHHcC
Q 036612 14 PLVDLRDVADVILVVYEKPEAKR-RYICTS--FAIRMQALAVKIKIMFL 59 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~~~~-~~~~~~--~~~s~~ei~~~i~~~~p 59 (102)
.+||++|+|++++.++..+...+ .|++++ +.+|++|+++++.+.++
T Consensus 249 ~~I~v~DlA~~i~~~~~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG 297 (390)
T PLN02657 249 KPISEADLASFIADCVLDESKINKVLPIGGPGKALTPLEQGEMLFRILG 297 (390)
T ss_pred CceeHHHHHHHHHHHHhCccccCCEEEcCCCCcccCHHHHHHHHHHHhC
Confidence 57999999999999997665545 788864 47999999999999875
No 62
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=97.48 E-value=8.5e-05 Score=40.08 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=19.1
Q ss_pred cCcCCCeec-CHHHHHHHHHHHHHHc
Q 036612 72 EGNLGWKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 72 ~~~lg~~~~-~l~e~i~~~~~~~~~~ 96 (102)
.++|||+|+ +|+++|+++++|.+++
T Consensus 33 ~~~LgW~p~~~L~~~i~~~w~W~~~n 58 (62)
T PF13950_consen 33 REELGWKPKYSLEDMIRDAWNWQKKN 58 (62)
T ss_dssp HHHC----SSSHHHHHHHHHHHHHHS
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHHC
Confidence 489999999 9999999999999874
No 63
>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]
Probab=97.14 E-value=0.00055 Score=47.69 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=39.2
Q ss_pred CCCceeHHHHHHHHHHHhcCCCCCc-cE-EEecCcccHHHHHHHHHHH
Q 036612 12 NRPLVDLRDVADVILVVYEKPEAKR-RY-ICTSFAIRMQALAVKIKIM 57 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~~~~~~~-~~-~~~~~~~s~~ei~~~i~~~ 57 (102)
....|||-|||.+++.|++.+.+.| .| +++...+++.|+++.+-+.
T Consensus 245 ~K~PVyV~DVaa~IvnAvkDp~s~Gktye~vGP~~yql~eLvd~my~~ 292 (391)
T KOG2865|consen 245 VKQPVYVVDVAAAIVNAVKDPDSMGKTYEFVGPDRYQLSELVDIMYDM 292 (391)
T ss_pred eeccEEEehHHHHHHHhccCccccCceeeecCCchhhHHHHHHHHHHH
Confidence 4567999999999999999999888 78 5667889999999877654
No 64
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=96.61 E-value=0.0054 Score=43.82 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=59.2
Q ss_pred CCCCCceeHHHHHHHHHHHhcC-----CCCCc-cEEEe-cCcccHHHHHHHHHHHcCC-----CcCCCcc----------
Q 036612 10 DKNRPLVDLRDVADVILVVYEK-----PEAKR-RYICT-SFAIRMQALAVKIKIMFLN-----YDYSKSF---------- 67 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~-----~~~~~-~~~~~-~~~~s~~ei~~~i~~~~p~-----~~~p~~~---------- 67 (102)
...-+|+++..||.||++|... +..+| .|+++ ++++..-++...+.+.++. +.+|...
T Consensus 212 ~~~~~~~~~~Nva~ahilA~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~ 291 (361)
T KOG1430|consen 212 ENLNDFTYGENVAWAHILAARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEI 291 (361)
T ss_pred ccccceEEechhHHHHHHHHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHH
Confidence 5788999999999999987643 34567 78887 4555555554477666531 1122110
Q ss_pred ----cC-C--------------C--------cCcCCCeec-CHHHHHHHHHHHHHHc
Q 036612 68 ----TK-V--------------D--------EGNLGWKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 68 ----~~-~--------------~--------~~~lg~~~~-~l~e~i~~~~~~~~~~ 96 (102)
.. . . ++.|||.|. +++|++.+++.|....
T Consensus 292 ~~~~l~p~~p~lt~~~v~~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~ 348 (361)
T KOG1430|consen 292 VYFLLRPYQPILTRFRVALLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASE 348 (361)
T ss_pred HHHhccCCCCCcChhheeeeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhh
Confidence 00 0 0 488999999 9999999999987754
No 65
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.90 E-value=0.011 Score=39.08 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=39.6
Q ss_pred CCCce-eHHHHHHHHHHHhcCCCCC--cc-EEEecCcccHHHHHHHHHHHcCC
Q 036612 12 NRPLV-DLRDVADVILVVYEKPEAK--RR-YICTSFAIRMQALAVKIKIMFLN 60 (102)
Q Consensus 12 ~~~~v-~V~Dva~a~v~a~~~~~~~--~~-~~~~~~~~s~~ei~~~i~~~~p~ 60 (102)
...++ +.+|++++...++.++... ++ +.++++.+|.+|+++.+.+.++.
T Consensus 175 ~~~~~~~~~Dvg~~va~il~~p~~~~~~~~~~~~~~~~t~~eia~~~s~~~G~ 227 (233)
T PF05368_consen 175 KAVPVTDTRDVGRAVAAILLDPEKHNNGKTIFLAGETLTYNEIAAILSKVLGK 227 (233)
T ss_dssp EEEEEEHHHHHHHHHHHHHHSGGGTTEEEEEEEGGGEEEHHHHHHHHHHHHTS
T ss_pred cccccccHHHHHHHHHHHHcChHHhcCCEEEEeCCCCCCHHHHHHHHHHHHCC
Confidence 35664 9999999999999987654 44 45667889999999999998763
No 66
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=95.82 E-value=0.044 Score=41.87 Aligned_cols=78 Identities=6% Similarity=0.077 Sum_probs=53.6
Q ss_pred CCceeHHHHHHHHHHHhcCCCCCccEEEec-CcccHHHHHHHHHHHcC-CC---cC-----C--------CcccCCC--c
Q 036612 13 RPLVDLRDVADVILVVYEKPEAKRRYICTS-FAIRMQALAVKIKIMFL-NY---DY-----S--------KSFTKVD--E 72 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~-~~~s~~ei~~~i~~~~p-~~---~~-----p--------~~~~~~~--~ 72 (102)
.+..+++|++.+++.+++. ..+|.|++++ +.+|+.|+++.|.+... .+ ++ + ...++.. .
T Consensus 563 ~~~~~~~~~~~~~~~l~~~-~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~~l~~~k~~ 641 (668)
T PLN02260 563 NSMTVLDELLPISIEMAKR-NLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNNEMDASKLK 641 (668)
T ss_pred CCceehhhHHHHHHHHHHh-CCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccccccHHHHH
Confidence 4578899999998888864 3346999875 67999999999988652 21 11 1 1111222 2
Q ss_pred CcCCCeecCHHHHHHHHHHH
Q 036612 73 GNLGWKYRPLEESIHDSDKN 92 (102)
Q Consensus 73 ~~lg~~~~~l~e~i~~~~~~ 92 (102)
+.+|. +.+++|+|++.+..
T Consensus 642 ~~~~~-~~~~~~~l~~~~~~ 660 (668)
T PLN02260 642 KEFPE-LLSIKESLIKYVFE 660 (668)
T ss_pred HhCcc-ccchHHHHHHHHhh
Confidence 45777 67999999988754
No 67
>KOG2774 consensus NAD dependent epimerase [General function prediction only]
Probab=95.39 E-value=0.088 Score=36.14 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=61.9
Q ss_pred cCCCCCCceeHHHHHHHHHHHhcCCC--CCc-cEEEecCcccHHHHHHHHHHHcCCCcCCCc------c-------cCCC
Q 036612 8 LEDKNRPLVDLRDVADVILVVYEKPE--AKR-RYICTSFAIRMQALAVKIKIMFLNYDYSKS------F-------TKVD 71 (102)
Q Consensus 8 ~~~~~~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~~~~s~~ei~~~i~~~~p~~~~p~~------~-------~~~~ 71 (102)
-|+.+.+..|.+|+-++.+..+..++ ... .||+++-.+|-.|++..+.+.+|.+.+... . .|.+
T Consensus 246 rpdtrlpmmy~~dc~~~~~~~~~a~~~~lkrr~ynvt~~sftpee~~~~~~~~~p~~~i~y~~~srq~iad~wp~~~dds 325 (366)
T KOG2774|consen 246 RPDTRLPMMYDTDCMASVIQLLAADSQSLKRRTYNVTGFSFTPEEIADAIRRVMPGFEIDYDICTRQSIADSWPMSLDDS 325 (366)
T ss_pred CCCccCceeehHHHHHHHHHHHhCCHHHhhhheeeeceeccCHHHHHHHHHhhCCCceeecccchhhhhhhhcccccCch
Confidence 37899999999999999988887654 233 599999899999999999999986533111 0 1222
Q ss_pred --cCcCCCeec-CHHHHHHHHHHHHHH
Q 036612 72 --EGNLGWKYR-PLEESIHDSDKNYEE 95 (102)
Q Consensus 72 --~~~lg~~~~-~l~e~i~~~~~~~~~ 95 (102)
+++..|+.+ .+-.-+.-+++.-+.
T Consensus 326 ~ar~~wh~~h~~~l~~~i~~~i~~~~~ 352 (366)
T KOG2774|consen 326 EARTEWHEKHSLHLLSIISTVVAVHKS 352 (366)
T ss_pred hHhhHHHHhhhhhHHHHHHHHHHHHHh
Confidence 455666666 666555555555443
No 68
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=95.13 E-value=0.054 Score=44.35 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=37.9
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCC--Cc-cEEEec-CcccHHHHHHHHHHH
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEA--KR-RYICTS-FAIRMQALAVKIKIM 57 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~--~~-~~~~~~-~~~s~~ei~~~i~~~ 57 (102)
.+.++|++|+|||++++.++.++.. .+ .|++++ ..+++.++++.+++.
T Consensus 1211 ~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 1262 (1389)
T TIGR03443 1211 NNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY 1262 (1389)
T ss_pred CCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh
Confidence 3568999999999999999876532 22 577764 578999999998764
No 69
>PLN02503 fatty acyl-CoA reductase 2
Probab=95.02 E-value=0.053 Score=41.38 Aligned_cols=51 Identities=18% Similarity=0.108 Sum_probs=39.4
Q ss_pred CCCCCCceeHHHHHHHHHHHhcC-C---CCCc-cEEEe-c--CcccHHHHHHHHHHHcC
Q 036612 9 EDKNRPLVDLRDVADVILVVYEK-P---EAKR-RYICT-S--FAIRMQALAVKIKIMFL 59 (102)
Q Consensus 9 ~~~~~~~v~V~Dva~a~v~a~~~-~---~~~~-~~~~~-~--~~~s~~ei~~~i~~~~p 59 (102)
++...|+|.|+.||.|+++|+.. . ...+ .|+++ + .++++.++.+.+.+.+.
T Consensus 415 ~~~~~DiVPVD~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~ 473 (605)
T PLN02503 415 PNGVLDVVPADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYK 473 (605)
T ss_pred CCeeEeEEeecHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHh
Confidence 46788999999999999988432 1 1224 79886 4 57999999999988653
No 70
>PRK06482 short chain dehydrogenase; Provisional
Probab=94.95 E-value=0.04 Score=37.17 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=33.2
Q ss_pred ceeHHHHHHHHHHHhcCCCCCccEEEec-CcccHHHHHHHHHHHc
Q 036612 15 LVDLRDVADVILVVYEKPEAKRRYICTS-FAIRMQALAVKIKIMF 58 (102)
Q Consensus 15 ~v~V~Dva~a~v~a~~~~~~~~~~~~~~-~~~s~~ei~~~i~~~~ 58 (102)
+.|++|+|++++.++..+....+|++++ +..+..++++.+.+..
T Consensus 218 ~~d~~~~~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 262 (276)
T PRK06482 218 PGDPQKMVQAMIASADQTPAPRRLTLGSDAYASIRAALSERLAAL 262 (276)
T ss_pred CCCHHHHHHHHHHHHcCCCCCeEEecChHHHHHHHHHHHHHHHHH
Confidence 3799999999999998665544898874 5677777776665554
No 71
>PRK07806 short chain dehydrogenase; Provisional
Probab=93.82 E-value=0.065 Score=35.41 Aligned_cols=31 Identities=10% Similarity=0.016 Sum_probs=25.3
Q ss_pred CceeHHHHHHHHHHHhcCCCCCc-cEEEecCc
Q 036612 14 PLVDLRDVADVILVVYEKPEAKR-RYICTSFA 44 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~~~~-~~~~~~~~ 44 (102)
.+++++|||++++.+++.+...| .|++++..
T Consensus 212 ~~~~~~dva~~~~~l~~~~~~~g~~~~i~~~~ 243 (248)
T PRK07806 212 KLYTVSEFAAEVARAVTAPVPSGHIEYVGGAD 243 (248)
T ss_pred ccCCHHHHHHHHHHHhhccccCccEEEecCcc
Confidence 78999999999999998765667 67776543
No 72
>PRK08263 short chain dehydrogenase; Provisional
Probab=93.40 E-value=0.18 Score=34.06 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=35.2
Q ss_pred Cc-eeHHHHHHHHHHHhcCCCCCccEEEec--CcccHHHHHHHHHHH
Q 036612 14 PL-VDLRDVADVILVVYEKPEAKRRYICTS--FAIRMQALAVKIKIM 57 (102)
Q Consensus 14 ~~-v~V~Dva~a~v~a~~~~~~~~~~~~~~--~~~s~~ei~~~i~~~ 57 (102)
.+ ++++|+|++++.+++.+...++|++++ ..+++.++.+.+.+-
T Consensus 215 ~~~~~p~dva~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (275)
T PRK08263 215 SVDGDPEAAAEALLKLVDAENPPLRLFLGSGVLDLAKADYERRLATW 261 (275)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCCeEEEeCchHHHHHHHHHHHHHHHH
Confidence 45 899999999999999877666776653 468888988888773
No 73
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.84 E-value=0.18 Score=33.22 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=24.5
Q ss_pred CCceeHHHHHHHHHHHhcCCCCCc-cEEEecC
Q 036612 13 RPLVDLRDVADVILVVYEKPEAKR-RYICTSF 43 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~~~~-~~~~~~~ 43 (102)
..+++++|+|++++.+++.+...| .|++++.
T Consensus 213 ~~~~~~~dva~~~~~~~~~~~~~g~~~~i~~g 244 (252)
T PRK06077 213 GKILDPEEVAEFVAAILKIESITGQVFVLDSG 244 (252)
T ss_pred CCCCCHHHHHHHHHHHhCccccCCCeEEecCC
Confidence 468999999999999997665555 7777643
No 74
>PRK07074 short chain dehydrogenase; Provisional
Probab=92.80 E-value=0.23 Score=32.99 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=33.3
Q ss_pred CCCceeHHHHHHHHHHHhcCC--CCCc-cEEEe-cCcccHHHHHHHHHH
Q 036612 12 NRPLVDLRDVADVILVVYEKP--EAKR-RYICT-SFAIRMQALAVKIKI 56 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~~~--~~~~-~~~~~-~~~~s~~ei~~~i~~ 56 (102)
..+|++++|+|++++.++... ...| .+++. +...+.+||.+.+.+
T Consensus 206 ~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 206 LQDFATPDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred CCCCCCHHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 468999999999999999643 2346 44554 456778999887654
No 75
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=92.21 E-value=0.34 Score=32.37 Aligned_cols=44 Identities=20% Similarity=0.135 Sum_probs=33.3
Q ss_pred CCceeHHHHHHHHHHHhcCCCCCc-cE-EEec---CcccHHHHHHHHHH
Q 036612 13 RPLVDLRDVADVILVVYEKPEAKR-RY-ICTS---FAIRMQALAVKIKI 56 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~~~~-~~-~~~~---~~~s~~ei~~~i~~ 56 (102)
..+|+.+|||++++.++..+...+ .+ ++++ ...++++++..+++
T Consensus 202 ~~~i~~~dvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 202 EGSISRDQVAEVAVEALLCPESSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred cCcccHHHHHHHHHHHhcChhhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 357999999999999998876545 55 3432 24899999988764
No 76
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=91.76 E-value=0.28 Score=32.33 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=24.3
Q ss_pred CCCCceeHHHHHHHHHHHhcCCC--CCc-cEEEec
Q 036612 11 KNRPLVDLRDVADVILVVYEKPE--AKR-RYICTS 42 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~ 42 (102)
..++|+|++|+|++++.+++.+. ..| .|++++
T Consensus 216 ~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~ 250 (255)
T TIGR01963 216 PTKRFVTVDEVAETALFLASDAAAGITGQAIVLDG 250 (255)
T ss_pred ccccCcCHHHHHHHHHHHcCccccCccceEEEEcC
Confidence 45689999999999999997642 235 567764
No 77
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.16 E-value=0.28 Score=32.53 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=23.6
Q ss_pred CCCceeHHHHHHHHHHHhcCCC--CCc-cEEEecC
Q 036612 12 NRPLVDLRDVADVILVVYEKPE--AKR-RYICTSF 43 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~~ 43 (102)
.++|++++|+|++++.++..+. ..| .|++.++
T Consensus 224 ~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g 258 (262)
T PRK13394 224 DGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHG 258 (262)
T ss_pred CCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCCc
Confidence 4679999999999999997643 235 4666543
No 78
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=90.62 E-value=1.2 Score=29.59 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=42.4
Q ss_pred CCCCCCceeHHHHHHHHHHHhcCCCCCc-cEEEec-CcccHHHHHHHHHHHcC
Q 036612 9 EDKNRPLVDLRDVADVILVVYEKPEAKR-RYICTS-FAIRMQALAVKIKIMFL 59 (102)
Q Consensus 9 ~~~~~~~v~V~Dva~a~v~a~~~~~~~~-~~~~~~-~~~s~~ei~~~i~~~~p 59 (102)
+.+...++.++|++.+...++..+...+ .|.+++ +..+..+++..+.+...
T Consensus 167 ~~~~~~~i~~~d~a~~~~~~l~~~~~~~~~~~l~g~~~~~~~~~~~~l~~~~g 219 (275)
T COG0702 167 GIGRLSPIAVDDVAEALAAALDAPATAGRTYELAGPEALTLAELASGLDYTIG 219 (275)
T ss_pred CCCceeeeEHHHHHHHHHHHhcCCcccCcEEEccCCceecHHHHHHHHHHHhC
Confidence 3556799999999999999998876555 787765 68999999999999874
No 79
>PRK07775 short chain dehydrogenase; Provisional
Probab=89.71 E-value=0.51 Score=31.86 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=22.9
Q ss_pred CCCceeHHHHHHHHHHHhcCCCCCccEEEe
Q 036612 12 NRPLVDLRDVADVILVVYEKPEAKRRYICT 41 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~ 41 (102)
.+.|+|++|+|++++.+++++.....|++.
T Consensus 220 ~~~~~~~~dva~a~~~~~~~~~~~~~~~~~ 249 (274)
T PRK07775 220 HDYFLRASDLARAITFVAETPRGAHVVNME 249 (274)
T ss_pred cccccCHHHHHHHHHHHhcCCCCCCeeEEe
Confidence 456999999999999999876432267664
No 80
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.11 E-value=0.57 Score=30.92 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=24.0
Q ss_pred CCCCceeHHHHHHHHHHHhcCCC--CCc-cEEEecC
Q 036612 11 KNRPLVDLRDVADVILVVYEKPE--AKR-RYICTSF 43 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~~ 43 (102)
..+.|++++|+|++++.++.... ..| .|++.++
T Consensus 219 ~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 254 (258)
T PRK12429 219 PQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGG 254 (258)
T ss_pred CccccCCHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence 34679999999999999987643 335 5666544
No 81
>PRK05875 short chain dehydrogenase; Provisional
Probab=87.47 E-value=1.4 Score=29.52 Aligned_cols=45 Identities=7% Similarity=0.109 Sum_probs=30.9
Q ss_pred CCceeHHHHHHHHHHHhcCCCC--Cc-cEEEec-Ccc----cHHHHHHHHHHH
Q 036612 13 RPLVDLRDVADVILVVYEKPEA--KR-RYICTS-FAI----RMQALAVKIKIM 57 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~~--~~-~~~~~~-~~~----s~~ei~~~i~~~ 57 (102)
.-+++++|+|++++.+++.+.. .| .|++++ ..+ ++.|+++.+...
T Consensus 217 ~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 269 (276)
T PRK05875 217 PRVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGA 269 (276)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhH
Confidence 3467899999999999987543 35 566654 444 667777666543
No 82
>PRK06914 short chain dehydrogenase; Provisional
Probab=86.66 E-value=0.9 Score=30.58 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=26.8
Q ss_pred CCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHH
Q 036612 13 RPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQ 48 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ 48 (102)
..+++++|+|++++.+++++....+|+++ +..+++.
T Consensus 224 ~~~~~~~dva~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (280)
T PRK06914 224 DTFGNPIDVANLIVEIAESKRPKLRYPIGKGVKLMIL 260 (280)
T ss_pred hccCCHHHHHHHHHHHHcCCCCCcccccCCchHHHHH
Confidence 45789999999999999987654467776 3445444
No 83
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=84.76 E-value=1.5 Score=28.76 Aligned_cols=32 Identities=3% Similarity=0.024 Sum_probs=24.0
Q ss_pred CCCceeHHHHHHHHHHHhcCCC-CCc-cEEEecC
Q 036612 12 NRPLVDLRDVADVILVVYEKPE-AKR-RYICTSF 43 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~~~~-~~~-~~~~~~~ 43 (102)
.+.+.+++|+|++++.+++... ..| .|+++++
T Consensus 211 ~~~~~~~edva~~~~~~~~~~~~~~g~~~~i~~g 244 (247)
T PRK12935 211 KKRFGQADEIAKGVVYLCRDGAYITGQQLNINGG 244 (247)
T ss_pred CCCCcCHHHHHHHHHHHcCcccCccCCEEEeCCC
Confidence 4578999999999999987542 334 6777654
No 84
>PRK05876 short chain dehydrogenase; Provisional
Probab=84.66 E-value=2.7 Score=28.51 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=26.2
Q ss_pred CCCCceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHH
Q 036612 11 KNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIK 55 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~ 55 (102)
..+++++++|||++++.++.+.. .|++. .......+.+...
T Consensus 219 ~~~~~~~~~dva~~~~~ai~~~~---~~~~~-~~~~~~~~~~~~~ 259 (275)
T PRK05876 219 LQDDNLGVDDIAQLTADAILANR---LYVLP-HAASRASIRRRFE 259 (275)
T ss_pred ccccCCCHHHHHHHHHHHHHcCC---eEEec-ChhhHHHHHHHHH
Confidence 34678999999999999997532 35554 3333444444333
No 85
>PRK06180 short chain dehydrogenase; Provisional
Probab=84.15 E-value=2.2 Score=28.77 Aligned_cols=32 Identities=25% Similarity=0.156 Sum_probs=24.1
Q ss_pred CCceeHHHHHHHHHHHhcCCCCCccEEEecCc
Q 036612 13 RPLVDLRDVADVILVVYEKPEAKRRYICTSFA 44 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~ 44 (102)
..+.+++|+|++++.+++.+....+|+++...
T Consensus 219 ~~~~~~~dva~~~~~~l~~~~~~~~~~~g~~~ 250 (277)
T PRK06180 219 KQPGDPAKAAQAILAAVESDEPPLHLLLGSDA 250 (277)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCeeEeccHHH
Confidence 34679999999999999876554477766443
No 86
>PRK08219 short chain dehydrogenase; Provisional
Probab=83.46 E-value=1.7 Score=28.03 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=22.1
Q ss_pred CCceeHHHHHHHHHHHhcCCCCCccEEEe
Q 036612 13 RPLVDLRDVADVILVVYEKPEAKRRYICT 41 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~~~~~~~~~ 41 (102)
..+++++|+|++++.+++.+.....|++.
T Consensus 193 ~~~~~~~dva~~~~~~l~~~~~~~~~~~~ 221 (227)
T PRK08219 193 ERYLRPETVAKAVRFAVDAPPDAHITEVV 221 (227)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCccceEE
Confidence 46899999999999999876533356553
No 87
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=81.98 E-value=0.96 Score=31.67 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCCCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcC
Q 036612 9 EDKNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFL 59 (102)
Q Consensus 9 ~~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p 59 (102)
|+..|-|+.+++.++.++.|+.....++.|+.- ++++++.|+++.+.+.++
T Consensus 197 p~mtRffmti~EAv~Lvl~a~~~~~~geifvl~mg~~v~I~dlA~~~i~~~g 248 (293)
T PF02719_consen 197 PDMTRFFMTIEEAVQLVLQAAALAKGGEIFVLDMGEPVKILDLAEAMIELSG 248 (293)
T ss_dssp TT-EEEEE-HHHHHHHHHHHHHH--TTEEEEE---TCEECCCHHHHHHHHTT
T ss_pred CCcEEEEecHHHHHHHHHHHHhhCCCCcEEEecCCCCcCHHHHHHHHHhhcc
Confidence 678899999999999999999765544488875 789999999999988774
No 88
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=81.08 E-value=1.6 Score=28.57 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=22.9
Q ss_pred CceeHHHHHHHHHHHhcCCC--CCc-cEEEecCc
Q 036612 14 PLVDLRDVADVILVVYEKPE--AKR-RYICTSFA 44 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~~~ 44 (102)
.+++++|+|++++.++.... ..| .|++.++.
T Consensus 214 ~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~ 247 (251)
T PRK12826 214 RLGEPEDIAAAVLFLASDEARYITGQTLPVDGGA 247 (251)
T ss_pred CCcCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 57999999999999887543 245 67776543
No 89
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=78.18 E-value=8.2 Score=29.67 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=44.0
Q ss_pred cCCCCCCceeHHHHHHHHHHHhcCCCCCccEEEe-cCcccHHHHHHHHHHHcC
Q 036612 8 LEDKNRPLVDLRDVADVILVVYEKPEAKRRYICT-SFAIRMQALAVKIKIMFL 59 (102)
Q Consensus 8 ~~~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~-~~~~s~~ei~~~i~~~~p 59 (102)
.|+..|-|.-+.+.|+..+.|......++.|+.- |+++++.|+++.+.+..+
T Consensus 444 dp~mtRyfMTI~EAv~LVlqA~a~~~gGeifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 444 DPDMTRFFMTIPEAVQLVLQAGAIAKGGEIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred CCCceeEEEEHHHHHHHHHHHHhhcCCCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 3788999999999999999999865443488886 799999999999988774
No 90
>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]
Probab=77.06 E-value=11 Score=28.27 Aligned_cols=51 Identities=12% Similarity=0.041 Sum_probs=37.9
Q ss_pred CCCCCCceeHHHHHHHHHHHhc--CCCCC---c-cEEEe-c--CcccHHHHHHHHHHHcC
Q 036612 9 EDKNRPLVDLRDVADVILVVYE--KPEAK---R-RYICT-S--FAIRMQALAVKIKIMFL 59 (102)
Q Consensus 9 ~~~~~~~v~V~Dva~a~v~a~~--~~~~~---~-~~~~~-~--~~~s~~ei~~~i~~~~p 59 (102)
|+...|+|=|+.||.+.+.+.- ..... - .|+++ + .++++.++.+...+.+.
T Consensus 273 ~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~~~e~~~~~~~ 332 (467)
T KOG1221|consen 273 PKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGDFIELALRYFE 332 (467)
T ss_pred cccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHHHHHHHHHhcc
Confidence 6788899999999999886651 11111 2 78875 3 46999999999988764
No 91
>PRK09135 pteridine reductase; Provisional
Probab=76.08 E-value=2.9 Score=27.27 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=18.9
Q ss_pred ceeHHHHHHHHHHHhcC-CCCCc-cEEEec
Q 036612 15 LVDLRDVADVILVVYEK-PEAKR-RYICTS 42 (102)
Q Consensus 15 ~v~V~Dva~a~v~a~~~-~~~~~-~~~~~~ 42 (102)
+.+++|+|+++..++.. ....| .|++++
T Consensus 214 ~~~~~d~a~~~~~~~~~~~~~~g~~~~i~~ 243 (249)
T PRK09135 214 IGTPEDIAEAVRFLLADASFITGQILAVDG 243 (249)
T ss_pred CcCHHHHHHHHHHHcCccccccCcEEEECC
Confidence 45799999999655543 23345 688864
No 92
>PRK12829 short chain dehydrogenase; Provisional
Probab=74.91 E-value=4.3 Score=26.84 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=21.5
Q ss_pred CCceeHHHHHHHHHHHhcCC--CCCc-cEEEec
Q 036612 13 RPLVDLRDVADVILVVYEKP--EAKR-RYICTS 42 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~--~~~~-~~~~~~ 42 (102)
..+++++|+|++++.++... ...| .|++.+
T Consensus 227 ~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~ 259 (264)
T PRK12829 227 GRMVEPEDIAATALFLASPAARYITGQAISVDG 259 (264)
T ss_pred CCCCCHHHHHHHHHHHcCccccCccCcEEEeCC
Confidence 35899999999998888642 2345 566654
No 93
>KOG4288 consensus Predicted oxidoreductase [General function prediction only]
Probab=72.31 E-value=6.1 Score=27.21 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=33.2
Q ss_pred CCcccCCCCCCceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHH
Q 036612 4 GNESLEDKNRPLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKI 54 (102)
Q Consensus 4 ~~~~~~~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i 54 (102)
++|.+.+...+.|-|++||.+.+.|++.++..|. +++.||.++-
T Consensus 235 kLp~lg~l~~ppvnve~VA~aal~ai~dp~f~Gv-------v~i~eI~~~a 278 (283)
T KOG4288|consen 235 KLPLLGPLLAPPVNVESVALAALKAIEDPDFKGV-------VTIEEIKKAA 278 (283)
T ss_pred cCcccccccCCCcCHHHHHHHHHHhccCCCcCce-------eeHHHHHHHH
Confidence 3566677888999999999999999998876543 4555555543
No 94
>PRK09134 short chain dehydrogenase; Provisional
Probab=72.30 E-value=5.9 Score=26.29 Aligned_cols=29 Identities=7% Similarity=0.093 Sum_probs=22.6
Q ss_pred CceeHHHHHHHHHHHhcCCCCCc-cEEEec
Q 036612 14 PLVDLRDVADVILVVYEKPEAKR-RYICTS 42 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~~~~-~~~~~~ 42 (102)
...+++|+|++++.+++++...| .|++.+
T Consensus 213 ~~~~~~d~a~~~~~~~~~~~~~g~~~~i~g 242 (258)
T PRK09134 213 RGSTPEEIAAAVRYLLDAPSVTGQMIAVDG 242 (258)
T ss_pred CCcCHHHHHHHHHHHhcCCCcCCCEEEECC
Confidence 35789999999999998776667 556643
No 95
>PRK06182 short chain dehydrogenase; Validated
Probab=69.53 E-value=8.2 Score=25.86 Aligned_cols=31 Identities=26% Similarity=0.161 Sum_probs=22.9
Q ss_pred CCceeHHHHHHHHHHHhcCCCCCccEEEecC
Q 036612 13 RPLVDLRDVADVILVVYEKPEAKRRYICTSF 43 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~ 43 (102)
+.+.+.+|+|++++.++.......+|+++..
T Consensus 218 ~~~~~~~~vA~~i~~~~~~~~~~~~~~~g~~ 248 (273)
T PRK06182 218 GRLSDPSVIADAISKAVTARRPKTRYAVGFG 248 (273)
T ss_pred ccCCCHHHHHHHHHHHHhCCCCCceeecCcc
Confidence 4577999999999999986443346776543
No 96
>PRK08324 short chain dehydrogenase; Validated
Probab=67.47 E-value=9 Score=29.73 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=22.7
Q ss_pred CCCceeHHHHHHHHHHHhc--CCCCCc-cEEEec
Q 036612 12 NRPLVDLRDVADVILVVYE--KPEAKR-RYICTS 42 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~--~~~~~~-~~~~~~ 42 (102)
.+.+++++|+|++++.++. .....| .|++.+
T Consensus 640 l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdg 673 (681)
T PRK08324 640 LKREVTPEDVAEAVVFLASGLLSKTTGAIITVDG 673 (681)
T ss_pred cCCccCHHHHHHHHHHHhCccccCCcCCEEEECC
Confidence 4578999999999999884 333445 577754
No 97
>PRK07060 short chain dehydrogenase; Provisional
Probab=66.21 E-value=9.5 Score=24.85 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=21.9
Q ss_pred CCCceeHHHHHHHHHHHhcCCC--CCc-cEEEec
Q 036612 12 NRPLVDLRDVADVILVVYEKPE--AKR-RYICTS 42 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~ 42 (102)
...|++++|+|++++.++..+. ..| .+++.+
T Consensus 207 ~~~~~~~~d~a~~~~~l~~~~~~~~~G~~~~~~~ 240 (245)
T PRK07060 207 LGRFAEVDDVAAPILFLLSDAASMVSGVSLPVDG 240 (245)
T ss_pred CCCCCCHHHHHHHHHHHcCcccCCccCcEEeECC
Confidence 3558999999999999997643 235 344443
No 98
>PRK12828 short chain dehydrogenase; Provisional
Probab=65.04 E-value=9.3 Score=24.65 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=22.0
Q ss_pred CCCceeHHHHHHHHHHHhcCCC--CCc-cEEEec
Q 036612 12 NRPLVDLRDVADVILVVYEKPE--AKR-RYICTS 42 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~ 42 (102)
...|++++|+|++++.+++... ..| .+.+.+
T Consensus 201 ~~~~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g 234 (239)
T PRK12828 201 FSRWVTPEQIAAVIAFLLSDEAQAITGASIPVDG 234 (239)
T ss_pred hhcCCCHHHHHHHHHHHhCcccccccceEEEecC
Confidence 3458999999999999997643 235 455544
No 99
>PRK08017 oxidoreductase; Provisional
Probab=64.85 E-value=17 Score=23.82 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=18.7
Q ss_pred CCceeHHHHHHHHHHHhcCCCC
Q 036612 13 RPLVDLRDVADVILVVYEKPEA 34 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~~ 34 (102)
+.+++++|+|++++.+++++..
T Consensus 204 ~~~~~~~d~a~~~~~~~~~~~~ 225 (256)
T PRK08017 204 RFTLGPEAVVPKLRHALESPKP 225 (256)
T ss_pred hcCCCHHHHHHHHHHHHhCCCC
Confidence 5689999999999999987543
No 100
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=63.31 E-value=8.9 Score=25.35 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=22.8
Q ss_pred CCCceeHHHHHHHHHHHhcCCC--CCc-cEEEecC
Q 036612 12 NRPLVDLRDVADVILVVYEKPE--AKR-RYICTSF 43 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~~ 43 (102)
.+.+++++||+++++.++.... ..| .|++.++
T Consensus 221 ~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g 255 (259)
T PRK12384 221 LKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGG 255 (259)
T ss_pred ccCCCCHHHHHHHHHHHcCcccccccCceEEEcCC
Confidence 3568899999999998876542 235 5777643
No 101
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.04 E-value=12 Score=24.25 Aligned_cols=29 Identities=10% Similarity=0.027 Sum_probs=21.7
Q ss_pred CceeHHHHHHHHHHHhcCCC--CCc-cEEEec
Q 036612 14 PLVDLRDVADVILVVYEKPE--AKR-RYICTS 42 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~ 42 (102)
.+++++|+|+++..+++... ..| .|++++
T Consensus 213 ~~~~~~dva~~~~~~~~~~~~~~~g~~~~i~~ 244 (249)
T PRK12825 213 RSGTPEDIARAVAFLCSDASDYITGQVIEVTG 244 (249)
T ss_pred CCcCHHHHHHHHHHHhCccccCcCCCEEEeCC
Confidence 38999999999999997643 345 566654
No 102
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=62.09 E-value=12 Score=24.66 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=23.5
Q ss_pred CCCceeHHHHHHHHHHHhcCCC--CCc-cEEEecC
Q 036612 12 NRPLVDLRDVADVILVVYEKPE--AKR-RYICTSF 43 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~~ 43 (102)
.+.+++++|||++++.++.... ..| .|++.++
T Consensus 219 ~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg 253 (257)
T PRK07067 219 LGRMGVPDDLTGMALFLASADADYIVAQTYNVDGG 253 (257)
T ss_pred CCCccCHHHHHHHHHHHhCcccccccCcEEeecCC
Confidence 4578999999999999887543 235 6777543
No 103
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=57.90 E-value=17 Score=23.48 Aligned_cols=31 Identities=10% Similarity=0.002 Sum_probs=21.8
Q ss_pred CCceeHHHHHHHHHHHhcCCC--CCc-cEEEecC
Q 036612 13 RPLVDLRDVADVILVVYEKPE--AKR-RYICTSF 43 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~~ 43 (102)
..+++++|+|++++.++.... ..| .|.++++
T Consensus 210 ~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg 243 (246)
T PRK05653 210 GRLGQPEEVANAVAFLASDAASYITGQVIPVNGG 243 (246)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence 557888999999999986532 345 4566543
No 104
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=56.91 E-value=9 Score=21.37 Aligned_cols=17 Identities=29% Similarity=0.344 Sum_probs=13.1
Q ss_pred CCCCceeHHHHHHHHHH
Q 036612 11 KNRPLVDLRDVADVILV 27 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~v~ 27 (102)
...-+|||+|+|.-+-.
T Consensus 54 Ks~~~V~v~dLA~yiD~ 70 (76)
T PF11112_consen 54 KSPKFVHVQDLAAYIDK 70 (76)
T ss_pred cCCceeeHHHHHHHHHH
Confidence 44569999999987643
No 105
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=56.12 E-value=26 Score=22.31 Aligned_cols=47 Identities=13% Similarity=0.086 Sum_probs=33.6
Q ss_pred ceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHHHHcCCCc
Q 036612 15 LVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYD 62 (102)
Q Consensus 15 ~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~~~~p~~~ 62 (102)
-+.=-|+...++..++.... ..|++++.+-...++.+.+++.+|.++
T Consensus 30 rv~g~dl~~~l~~~~~~~~~-~ifllG~~~~~~~~~~~~l~~~yP~l~ 76 (172)
T PF03808_consen 30 RVTGSDLFPDLLRRAEQRGK-RIFLLGGSEEVLEKAAANLRRRYPGLR 76 (172)
T ss_pred ccCHHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHCCCeE
Confidence 34556777777766654321 268888888888999999999998754
No 106
>PRK07041 short chain dehydrogenase; Provisional
Probab=55.39 E-value=20 Score=23.16 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=21.1
Q ss_pred ceeHHHHHHHHHHHhcCCCCCc-cEEEec
Q 036612 15 LVDLRDVADVILVVYEKPEAKR-RYICTS 42 (102)
Q Consensus 15 ~v~V~Dva~a~v~a~~~~~~~~-~~~~~~ 42 (102)
+.+.+|+|++++.+++.....| .|++.+
T Consensus 197 ~~~~~dva~~~~~l~~~~~~~G~~~~v~g 225 (230)
T PRK07041 197 VGQPEDVANAILFLAANGFTTGSTVLVDG 225 (230)
T ss_pred CcCHHHHHHHHHHHhcCCCcCCcEEEeCC
Confidence 4578999999999998654556 676654
No 107
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=54.90 E-value=15 Score=28.27 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=21.2
Q ss_pred CCCCCceeHHHH---HHHHHHHhcCCCC
Q 036612 10 DKNRPLVDLRDV---ADVILVVYEKPEA 34 (102)
Q Consensus 10 ~~~~~~v~V~Dv---a~a~v~a~~~~~~ 34 (102)
....++|||+|. |++|..+++..+.
T Consensus 316 m~gY~lvH~~D~~y~Aeah~e~iktgeS 343 (712)
T KOG3560|consen 316 MPGYNLVHVEDKVYMAEAHSEGIKTGES 343 (712)
T ss_pred CCccceeehhhhhhhhHHHHHHhhcCCc
Confidence 577899999998 7899999987654
No 108
>PRK08628 short chain dehydrogenase; Provisional
Probab=54.89 E-value=11 Score=24.97 Aligned_cols=36 Identities=6% Similarity=0.155 Sum_probs=24.7
Q ss_pred CceeHHHHHHHHHHHhcCCC--CCc-cEEEecCcccHHH
Q 036612 14 PLVDLRDVADVILVVYEKPE--AKR-RYICTSFAIRMQA 49 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~~~~s~~e 49 (102)
.++..+|+|++++.++.... ..| .+.+.+..+.+++
T Consensus 217 ~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~~~~~~ 255 (258)
T PRK08628 217 RMTTAEEIADTAVFLLSERSSHTTGQWLFVDGGYVHLDR 255 (258)
T ss_pred cCCCHHHHHHHHHHHhChhhccccCceEEecCCcccccc
Confidence 57889999999999987542 345 5555555555544
No 109
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=54.43 E-value=29 Score=22.40 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHHHHcCCCcC
Q 036612 19 RDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYDY 63 (102)
Q Consensus 19 ~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~~~~p~~~~ 63 (102)
-|++..++..+.... ...|++++.+-...++++.+++.+|.+++
T Consensus 34 ~dl~~~l~~~~~~~~-~~vfllG~~~~v~~~~~~~l~~~yP~l~i 77 (177)
T TIGR00696 34 PDLMEELCQRAGKEK-LPIFLYGGKPDVLQQLKVKLIKEYPKLKI 77 (177)
T ss_pred HHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHHHHHHCCCCEE
Confidence 477776666554322 12688888888999999999999987643
No 110
>PF13730 HTH_36: Helix-turn-helix domain
Probab=52.61 E-value=21 Score=17.84 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHcCCC
Q 036612 83 EESIHDSDKNYEESGIL 99 (102)
Q Consensus 83 ~e~i~~~~~~~~~~~~~ 99 (102)
+.++.++++.+.+.|+|
T Consensus 39 ~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 39 RRTVQRAIKELEEKGLI 55 (55)
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 44666677777777765
No 111
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=52.40 E-value=24 Score=22.75 Aligned_cols=30 Identities=7% Similarity=-0.030 Sum_probs=20.7
Q ss_pred CceeHHHHHHHHHHHhcCCC--CCc-cEEEecC
Q 036612 14 PLVDLRDVADVILVVYEKPE--AKR-RYICTSF 43 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~~ 43 (102)
-+.+++|+|++++.++.... ..| .|++.++
T Consensus 205 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 205 RFGTPEEVANAVAFLASDEASYITGQVIHVDGG 237 (239)
T ss_pred CCcCHHHHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence 36789999999998885432 345 5666543
No 112
>PRK12746 short chain dehydrogenase; Provisional
Probab=52.15 E-value=21 Score=23.38 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=21.7
Q ss_pred CCceeHHHHHHHHHHHhcCCC--CCc-cEEEecC
Q 036612 13 RPLVDLRDVADVILVVYEKPE--AKR-RYICTSF 43 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~~ 43 (102)
..+++++|+|+++..++.... ..| .|++++.
T Consensus 218 ~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 218 GRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred CCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 356799999999988887543 235 6766543
No 113
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=52.15 E-value=35 Score=19.15 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=17.1
Q ss_pred cE-EEecCcccHHHHHHHHHHH
Q 036612 37 RY-ICTSFAIRMQALAVKIKIM 57 (102)
Q Consensus 37 ~~-~~~~~~~s~~ei~~~i~~~ 57 (102)
|| -|+.+..+..++++.+.+.
T Consensus 36 rFhTCSa~~m~a~~Li~FL~~k 57 (77)
T TIGR03853 36 RFHTCSAEGMTADELLQFLLKK 57 (77)
T ss_pred eEeecccccCCHHHHHHHHHHC
Confidence 77 5667889999999988775
No 114
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=50.95 E-value=21 Score=16.47 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHcCCC
Q 036612 83 EESIHDSDKNYEESGIL 99 (102)
Q Consensus 83 ~e~i~~~~~~~~~~~~~ 99 (102)
.|++.+++..+++.|+|
T Consensus 16 ~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 16 RETVSRILKKLERQGLI 32 (32)
T ss_dssp HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 45677777777777654
No 115
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=50.86 E-value=10 Score=29.69 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=23.9
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCc-cEEEe
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKR-RYICT 41 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~-~~~~~ 41 (102)
+++|++||+.|.+-||+.-+..--... +++..
T Consensus 124 NGYRSlI~~~~~claH~~s~~~~v~~~R~~ifF 156 (880)
T KOG4388|consen 124 NGYRSLIHTARCCLAHLLSKSRYVASNRRSIFF 156 (880)
T ss_pred CceeeehhhHHHHHHHHHHHHHHHHhccceEEE
Confidence 899999999999999987776533333 45443
No 116
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.21 E-value=28 Score=22.66 Aligned_cols=30 Identities=10% Similarity=0.073 Sum_probs=21.9
Q ss_pred CCceeHHHHHHHHHHHhcCCCCCc-cEEEec
Q 036612 13 RPLVDLRDVADVILVVYEKPEAKR-RYICTS 42 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~~~~-~~~~~~ 42 (102)
..+.+++|+|+++..++......| .|++.+
T Consensus 219 ~~~~~~~~~a~~~~~l~~~~~~~g~~~~~~g 249 (253)
T PRK08217 219 GRLGEPEEIAHTVRFIIENDYVTGRVLEIDG 249 (253)
T ss_pred CCCcCHHHHHHHHHHHHcCCCcCCcEEEeCC
Confidence 346799999999999887644456 566554
No 117
>PRK06181 short chain dehydrogenase; Provisional
Probab=48.97 E-value=19 Score=23.82 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=17.5
Q ss_pred CCCceeHHHHHHHHHHHhcC
Q 036612 12 NRPLVDLRDVADVILVVYEK 31 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~~ 31 (102)
...+++++|+|++++.+++.
T Consensus 206 ~~~~~~~~dva~~i~~~~~~ 225 (263)
T PRK06181 206 ESKIMSAEECAEAILPAIAR 225 (263)
T ss_pred ccCCCCHHHHHHHHHHHhhC
Confidence 34799999999999999974
No 118
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=47.11 E-value=34 Score=22.09 Aligned_cols=29 Identities=7% Similarity=0.052 Sum_probs=20.4
Q ss_pred CceeHHHHHHHHHHHhcC--CCCCc-cEEEec
Q 036612 14 PLVDLRDVADVILVVYEK--PEAKR-RYICTS 42 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~--~~~~~-~~~~~~ 42 (102)
.+.+++|+|+++..++.. ....| .|++++
T Consensus 212 ~~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~ 243 (248)
T PRK05557 212 RLGQPEEIASAVAFLASDEAAYITGQTLHVNG 243 (248)
T ss_pred CCcCHHHHHHHHHHHcCcccCCccccEEEecC
Confidence 468999999999888765 22345 466654
No 119
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=46.70 E-value=53 Score=18.54 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=28.6
Q ss_pred CceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHHHHcCCCcCCC
Q 036612 14 PLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYDYSK 65 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~~~~p~~~~p~ 65 (102)
.|+-..|+.-..+..+.. ++...|...+.+.+.+.+|.+.+|.
T Consensus 8 qfiPL~EvlC~~I~dln~---------~~~~at~E~l~~~L~~~yp~i~~Ps 50 (80)
T PF10264_consen 8 QFIPLPEVLCWVISDLNA---------AGQPATQETLREHLRKHYPGIAIPS 50 (80)
T ss_pred cceeHHHHHHHHHHHHhc---------cCCcchHHHHHHHHHHhCCCCCCCC
Confidence 455555555444444432 3456888999999999999876664
No 120
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=46.70 E-value=46 Score=21.16 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=33.5
Q ss_pred CceeHHHHHHHHHHHhcCCCCCccEEEecCcccHHHHHHHHHHHcCCCc
Q 036612 14 PLVDLRDVADVILVVYEKPEAKRRYICTSFAIRMQALAVKIKIMFLNYD 62 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~~~~~~~~~~~~~s~~ei~~~i~~~~p~~~ 62 (102)
.-+.=.|+...++..++... ...|++++.+-...++++.+++.+|.++
T Consensus 27 ~r~~g~dl~~~ll~~~~~~~-~~v~llG~~~~~~~~~~~~l~~~yp~l~ 74 (171)
T cd06533 27 ERVTGSDLMPALLELAAQKG-LRVFLLGAKPEVLEKAAERLRARYPGLK 74 (171)
T ss_pred cccCcHHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHHHHHHCCCcE
Confidence 34445677777666665421 1257888888888999999999998754
No 121
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=46.53 E-value=25 Score=23.49 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=21.2
Q ss_pred CCccEEEecCcccHHHHHHHHHHH
Q 036612 34 AKRRYICTSFAIRMQALAVKIKIM 57 (102)
Q Consensus 34 ~~~~~~~~~~~~s~~ei~~~i~~~ 57 (102)
++|+|++.+.++|..|+++.+.+.
T Consensus 173 ~~gifvItSCN~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 173 PGGIFVITSCNFTKDELVEEFENF 196 (227)
T ss_pred CCcEEEEEecCccHHHHHHHHhcC
Confidence 456999999999999999998875
No 122
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=46.33 E-value=20 Score=18.27 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHHcCCCCC
Q 036612 81 PLEESIHDSDKNYEESGILHK 101 (102)
Q Consensus 81 ~l~e~i~~~~~~~~~~~~~~~ 101 (102)
++-.++.++++.+.+.|.|+|
T Consensus 10 tlG~aL~dtLDeli~~~~I~p 30 (49)
T PF02268_consen 10 TLGIALTDTLDELIQEGKITP 30 (49)
T ss_dssp HHHHHHHHHHHHHHHTTSS-H
T ss_pred hHHHHHHHHHHHHHHcCCCCH
Confidence 667788999999999888876
No 123
>PRK07774 short chain dehydrogenase; Provisional
Probab=44.88 E-value=28 Score=22.71 Aligned_cols=28 Identities=7% Similarity=0.115 Sum_probs=20.7
Q ss_pred ceeHHHHHHHHHHHhcCCC--CCc-cEEEec
Q 036612 15 LVDLRDVADVILVVYEKPE--AKR-RYICTS 42 (102)
Q Consensus 15 ~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~ 42 (102)
+.+++|+|++++.++.... ..| .|++.+
T Consensus 214 ~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~ 244 (250)
T PRK07774 214 MGTPEDLVGMCLFLLSDEASWITGQIFNVDG 244 (250)
T ss_pred CcCHHHHHHHHHHHhChhhhCcCCCEEEECC
Confidence 6689999999999987642 245 577754
No 124
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.25 E-value=33 Score=22.36 Aligned_cols=29 Identities=21% Similarity=0.356 Sum_probs=21.1
Q ss_pred CceeHHHHHHHHHHHhcCCC--CCc-cEEEec
Q 036612 14 PLVDLRDVADVILVVYEKPE--AKR-RYICTS 42 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~ 42 (102)
.+++.+|+|++++.++..+. ..| .+++.+
T Consensus 213 ~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 244 (250)
T PRK08063 213 RMVEPEDVANAVLFLCSPEADMIRGQTIIVDG 244 (250)
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCCEEEECC
Confidence 47999999999999987643 235 455544
No 125
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.89 E-value=48 Score=21.54 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=20.9
Q ss_pred CCceeHHHHHHHHHHHhcCCC--CCccE-EEec
Q 036612 13 RPLVDLRDVADVILVVYEKPE--AKRRY-ICTS 42 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~--~~~~~-~~~~ 42 (102)
..+++++|+|++++.++..+. ..|.+ .+.+
T Consensus 214 ~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~g 246 (251)
T PRK07231 214 GRLGTPEDIANAALFLASDEASWITGVTLVVDG 246 (251)
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCCCeEEECC
Confidence 457899999999999986543 23544 4433
No 126
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.23 E-value=56 Score=22.51 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=33.8
Q ss_pred CCCCCceeHHHHHHHHHHHhcCCCCCccEEE-e-c-CcccHHHHHHHHHHH
Q 036612 10 DKNRPLVDLRDVADVILVVYEKPEAKRRYIC-T-S-FAIRMQALAVKIKIM 57 (102)
Q Consensus 10 ~~~~~~v~V~Dva~a~v~a~~~~~~~~~~~~-~-~-~~~s~~ei~~~i~~~ 57 (102)
.....+-.++|.|+.++.++..-...|-|.+ + + +..=-.|++..+...
T Consensus 39 ~~~~~~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~S~GG~vA~evA~qL~~~ 89 (257)
T COG3319 39 AGEQPFASLDDMAAAYVAAIRRVQPEGPYVLLGWSLGGAVAFEVAAQLEAQ 89 (257)
T ss_pred ccccccCCHHHHHHHHHHHHHHhCCCCCEEEEeeccccHHHHHHHHHHHhC
Confidence 3457888999999999999998888886654 3 2 223335666666553
No 127
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=39.13 E-value=23 Score=17.78 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=9.9
Q ss_pred CcCCCeec--CHHHHHHHH
Q 036612 73 GNLGWKYR--PLEESIHDS 89 (102)
Q Consensus 73 ~~lg~~~~--~l~e~i~~~ 89 (102)
.+.||+++ ++++++++.
T Consensus 29 ~~~GF~F~~p~l~~AL~~l 47 (48)
T PF08338_consen 29 LEAGFQFRYPTLEEALRDL 47 (48)
T ss_dssp HHTT---S-SSHHHHHHH-
T ss_pred HHCCCcccCCCHHHHHhcc
Confidence 45688777 898888764
No 128
>PRK06138 short chain dehydrogenase; Provisional
Probab=38.38 E-value=46 Score=21.65 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=17.1
Q ss_pred CceeHHHHHHHHHHHhcCCC
Q 036612 14 PLVDLRDVADVILVVYEKPE 33 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~ 33 (102)
.|++++|+|++++.++..+.
T Consensus 216 ~~~~~~d~a~~~~~l~~~~~ 235 (252)
T PRK06138 216 RFGTAEEVAQAALFLASDES 235 (252)
T ss_pred CCcCHHHHHHHHHHHcCchh
Confidence 48899999999999997754
No 129
>PRK12939 short chain dehydrogenase; Provisional
Probab=37.97 E-value=60 Score=21.04 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=17.5
Q ss_pred CCCceeHHHHHHHHHHHhcCC
Q 036612 12 NRPLVDLRDVADVILVVYEKP 32 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~~~ 32 (102)
...+++++|+|++++.++...
T Consensus 212 ~~~~~~~~dva~~~~~l~~~~ 232 (250)
T PRK12939 212 LERLQVPDDVAGAVLFLLSDA 232 (250)
T ss_pred CCCCCCHHHHHHHHHHHhCcc
Confidence 345799999999999999754
No 130
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=35.28 E-value=1.9e+02 Score=21.55 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCCCCccE-EEecCcccHHHHHHHHHHHcCCC--cCCCc--ccCCC-------cCcCC--Ceec-CHH
Q 036612 19 RDVADVILVVYEKPEAKRRY-ICTSFAIRMQALAVKIKIMFLNY--DYSKS--FTKVD-------EGNLG--WKYR-PLE 83 (102)
Q Consensus 19 ~Dva~a~v~a~~~~~~~~~~-~~~~~~~s~~ei~~~i~~~~p~~--~~p~~--~~~~~-------~~~lg--~~~~-~l~ 83 (102)
+.+.+++-..+..+.....+ |+.|+-.+-..+++-|.+.+.++ ++|-- ..++. -++.| .... +++
T Consensus 331 ~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l~~~~~~~~~~~~l~ 410 (422)
T PLN00124 331 QQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKESGMTLITAEDLD 410 (422)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHhCCCCeEEcCCHH
Confidence 88888888777777666654 67787778888888888876432 23321 11221 14445 4455 999
Q ss_pred HHHHHHHH
Q 036612 84 ESIHDSDK 91 (102)
Q Consensus 84 e~i~~~~~ 91 (102)
|+++.+++
T Consensus 411 ~A~~~~v~ 418 (422)
T PLN00124 411 DAAEKAVK 418 (422)
T ss_pred HHHHHHHH
Confidence 99998875
No 131
>PRK09186 flagellin modification protein A; Provisional
Probab=32.56 E-value=43 Score=21.91 Aligned_cols=20 Identities=10% Similarity=0.388 Sum_probs=16.9
Q ss_pred CCceeHHHHHHHHHHHhcCC
Q 036612 13 RPLVDLRDVADVILVVYEKP 32 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~ 32 (102)
..+++++|+|++++.++...
T Consensus 220 ~~~~~~~dva~~~~~l~~~~ 239 (256)
T PRK09186 220 KGMLDPDDICGTLVFLLSDQ 239 (256)
T ss_pred cCCCCHHHhhhhHhheeccc
Confidence 35789999999999999754
No 132
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=32.10 E-value=69 Score=18.01 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=16.6
Q ss_pred cE-EEecCcccHHHHHHHHHHH
Q 036612 37 RY-ICTSFAIRMQALAVKIKIM 57 (102)
Q Consensus 37 ~~-~~~~~~~s~~ei~~~i~~~ 57 (102)
|| -|+.+..+..++++.+.+.
T Consensus 38 rFhTCSae~m~a~eLv~FL~~r 59 (78)
T PF10678_consen 38 RFHTCSAEGMTADELVDFLEER 59 (78)
T ss_pred eEEecCCCCCCHHHHHHHHHHc
Confidence 77 4667889999999888774
No 133
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=31.12 E-value=35 Score=25.12 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=16.7
Q ss_pred CCceeHHHHHHHHHHHhcC
Q 036612 13 RPLVDLRDVADVILVVYEK 31 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~ 31 (102)
-.|+||.|++-+++.+++.
T Consensus 146 SGFCYvNDIVL~ILeLlK~ 164 (425)
T KOG1342|consen 146 SGFCYVNDIVLGILELLKY 164 (425)
T ss_pred CcceeehHHHHHHHHHHHh
Confidence 4699999999999999864
No 134
>PRK06194 hypothetical protein; Provisional
Probab=29.83 E-value=76 Score=21.23 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=9.3
Q ss_pred CCCCceeHHHHHHHH
Q 036612 11 KNRPLVDLRDVADVI 25 (102)
Q Consensus 11 ~~~~~v~V~Dva~a~ 25 (102)
..++|++++|++.+.
T Consensus 217 ~~~~~~~~~~~~~~~ 231 (287)
T PRK06194 217 PTRSQLIAQAMSQKA 231 (287)
T ss_pred ccchhhHHHHHHHhh
Confidence 456676666666554
No 135
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=29.23 E-value=77 Score=20.62 Aligned_cols=28 Identities=4% Similarity=-0.008 Sum_probs=19.9
Q ss_pred CCceeHHHHHHHHHHHhcCCC--CCccEEE
Q 036612 13 RPLVDLRDVADVILVVYEKPE--AKRRYIC 40 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~--~~~~~~~ 40 (102)
..|+..+|+|++++.++.... ..|.++.
T Consensus 211 ~~~~~~~dva~~~~~l~s~~~~~~~G~~i~ 240 (248)
T TIGR01832 211 GRWGTPDDIGGPAVFLASSASDYVNGYTLA 240 (248)
T ss_pred CCCcCHHHHHHHHHHHcCccccCcCCcEEE
Confidence 358899999999999987533 2354433
No 136
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=28.84 E-value=83 Score=20.66 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=19.3
Q ss_pred ceeHHHHHHHHHHHhcCCC--CCc-cEEEec
Q 036612 15 LVDLRDVADVILVVYEKPE--AKR-RYICTS 42 (102)
Q Consensus 15 ~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~ 42 (102)
+.+++|+|++++.++.... ..| .|++.+
T Consensus 226 ~~~~~dva~~~~~l~s~~~~~~~g~~~~v~g 256 (260)
T PRK12823 226 YGTIDEQVAAILFLASDEASYITGTVLPVGG 256 (260)
T ss_pred CCCHHHHHHHHHHHcCcccccccCcEEeecC
Confidence 4589999999988886432 245 566643
No 137
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=28.39 E-value=1e+02 Score=18.05 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHHcCCCCC
Q 036612 81 PLEESIHDSDKNYEESGILHK 101 (102)
Q Consensus 81 ~l~e~i~~~~~~~~~~~~~~~ 101 (102)
+.++.+..+++.+++.|++++
T Consensus 72 ~~~~~~~~a~~~~~~~g~~~~ 92 (117)
T PF02887_consen 72 DTEELIAEALEYAKERGLLKP 92 (117)
T ss_dssp SHHHHHHHHHHHHHHTTSS-T
T ss_pred cHHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999765
No 138
>PRK12744 short chain dehydrogenase; Provisional
Probab=28.22 E-value=86 Score=20.63 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=20.6
Q ss_pred CceeHHHHHHHHHHHhcCCC-CCc-cEEEec
Q 036612 14 PLVDLRDVADVILVVYEKPE-AKR-RYICTS 42 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~-~~~-~~~~~~ 42 (102)
.+.+++|+|+++..+++... ..| .+++.+
T Consensus 222 ~~~~~~dva~~~~~l~~~~~~~~g~~~~~~g 252 (257)
T PRK12744 222 GLTDIEDIVPFIRFLVTDGWWITGQTILING 252 (257)
T ss_pred CCCCHHHHHHHHHHhhcccceeecceEeecC
Confidence 58899999999999998422 234 555543
No 139
>PRK06924 short chain dehydrogenase; Provisional
Probab=27.53 E-value=87 Score=20.40 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=17.3
Q ss_pred ceeHHHHHHHHHHHhcC-CCCCccE
Q 036612 15 LVDLRDVADVILVVYEK-PEAKRRY 38 (102)
Q Consensus 15 ~v~V~Dva~a~v~a~~~-~~~~~~~ 38 (102)
+..++|+|++++.++.. ....|++
T Consensus 220 ~~~~~dva~~~~~l~~~~~~~~G~~ 244 (251)
T PRK06924 220 LLSPEYVAKALRNLLETEDFPNGEV 244 (251)
T ss_pred cCCHHHHHHHHHHHHhcccCCCCCE
Confidence 67889999999988875 3334443
No 140
>PF11782 DUF3319: Protein of unknown function (DUF3319); InterPro: IPR021753 This is a family of short bacterial proteins, a few of which are annotated as being minor tail protein. Otherwise the function is unknown.
Probab=27.51 E-value=63 Score=18.62 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHcC-CCCC
Q 036612 84 ESIHDSDKNYEESG-ILHK 101 (102)
Q Consensus 84 e~i~~~~~~~~~~~-~~~~ 101 (102)
-+|++.|+||.+.+ +|.|
T Consensus 35 ~~vKksIdww~dt~siI~P 53 (88)
T PF11782_consen 35 FEVKKSIDWWCDTGSIIDP 53 (88)
T ss_pred HHHHHHHHHHHhcccccCc
Confidence 46899999999988 4443
No 141
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=27.33 E-value=87 Score=20.53 Aligned_cols=30 Identities=0% Similarity=0.012 Sum_probs=21.0
Q ss_pred CCceeHHHHHHHHHHHhcCCC--CCc-cEEEec
Q 036612 13 RPLVDLRDVADVILVVYEKPE--AKR-RYICTS 42 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~ 42 (102)
..+.+++|+|.+++.++.... ..| .+++.+
T Consensus 217 ~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~g 249 (255)
T PRK07523 217 GRWGKVEELVGACVFLASDASSFVNGHVLYVDG 249 (255)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCccCcEEEECC
Confidence 347889999999999987532 235 555543
No 142
>PRK05650 short chain dehydrogenase; Provisional
Probab=26.21 E-value=65 Score=21.44 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.6
Q ss_pred CCceeHHHHHHHHHHHhcC
Q 036612 13 RPLVDLRDVADVILVVYEK 31 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~ 31 (102)
..+++++|+|++++.++++
T Consensus 207 ~~~~~~~~vA~~i~~~l~~ 225 (270)
T PRK05650 207 KSPITAADIADYIYQQVAK 225 (270)
T ss_pred cCCCCHHHHHHHHHHHHhC
Confidence 3568999999999999985
No 143
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=26.21 E-value=1.4e+02 Score=19.48 Aligned_cols=23 Identities=13% Similarity=0.279 Sum_probs=16.1
Q ss_pred CCeecCHHHHHHHHHHHHHHcCC
Q 036612 76 GWKYRPLEESIHDSDKNYEESGI 98 (102)
Q Consensus 76 g~~~~~l~e~i~~~~~~~~~~~~ 98 (102)
+-......+.++++++.+++.|.
T Consensus 114 ~~~~~~~~~~~r~~v~~l~~~g~ 136 (178)
T PF14606_consen 114 GETVEEFREALREAVEQLRKEGD 136 (178)
T ss_dssp S--HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 33445788899999999987664
No 144
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=26.20 E-value=94 Score=19.91 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=32.3
Q ss_pred CCCceeHHHHHHHHHHHhcCCCCCccEEEec---CcccHHHHHHHHHHH
Q 036612 12 NRPLVDLRDVADVILVVYEKPEAKRRYICTS---FAIRMQALAVKIKIM 57 (102)
Q Consensus 12 ~~~~v~V~Dva~a~v~a~~~~~~~~~~~~~~---~~~s~~ei~~~i~~~ 57 (102)
......++++|+.++..+......|.|.+.| +.+=-.|++..+.+.
T Consensus 42 ~~~~~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg~lA~E~A~~Le~~ 90 (229)
T PF00975_consen 42 EPPPDSIEELASRYAEAIRARQPEGPYVLAGWSFGGILAFEMARQLEEA 90 (229)
T ss_dssp SHEESSHHHHHHHHHHHHHHHTSSSSEEEEEETHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhhhhCCCCCeeehccCccHHHHHHHHHHHHHh
Confidence 3457899999999999997655666664432 334446778777775
No 145
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=26.11 E-value=73 Score=13.92 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=10.3
Q ss_pred CcccHHHHHHHHHH
Q 036612 43 FAIRMQALAVKIKI 56 (102)
Q Consensus 43 ~~~s~~ei~~~i~~ 56 (102)
+.+++.|+..++++
T Consensus 15 G~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 15 GKIDFEEFKEMMKK 28 (29)
T ss_dssp SEEEHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHh
Confidence 56788888877764
No 146
>PLN02253 xanthoxin dehydrogenase
Probab=25.80 E-value=69 Score=21.39 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=19.4
Q ss_pred ceeHHHHHHHHHHHhcCCC--CCc-cEEEec
Q 036612 15 LVDLRDVADVILVVYEKPE--AKR-RYICTS 42 (102)
Q Consensus 15 ~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~ 42 (102)
.++++|+|++++.++.... ..| .+.+.+
T Consensus 237 ~~~~~dva~~~~~l~s~~~~~i~G~~i~vdg 267 (280)
T PLN02253 237 ELTVDDVANAVLFLASDEARYISGLNLMIDG 267 (280)
T ss_pred CCCHHHHHHHHHhhcCcccccccCcEEEECC
Confidence 5799999999999886432 234 455543
No 147
>PRK07578 short chain dehydrogenase; Provisional
Probab=25.53 E-value=55 Score=20.63 Aligned_cols=19 Identities=21% Similarity=-0.006 Sum_probs=16.1
Q ss_pred CceeHHHHHHHHHHHhcCC
Q 036612 14 PLVDLRDVADVILVVYEKP 32 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~ 32 (102)
.++..+|+|++++.+++..
T Consensus 172 ~~~~~~~~a~~~~~~~~~~ 190 (199)
T PRK07578 172 EPVPAARVALAYVRSVEGA 190 (199)
T ss_pred CCCCHHHHHHHHHHHhccc
Confidence 4689999999999998754
No 148
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=25.34 E-value=88 Score=14.69 Aligned_cols=14 Identities=29% Similarity=0.518 Sum_probs=9.9
Q ss_pred HHHHHHHHHcCCCC
Q 036612 87 HDSDKNYEESGILH 100 (102)
Q Consensus 87 ~~~~~~~~~~~~~~ 100 (102)
.+|+..|.+.|+|+
T Consensus 13 ~~tlR~ye~~Gll~ 26 (38)
T PF00376_consen 13 PRTLRYYEREGLLP 26 (38)
T ss_dssp HHHHHHHHHTTSS-
T ss_pred HHHHHHHHHCCCCC
Confidence 35678888888883
No 149
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=25.16 E-value=78 Score=20.21 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=22.2
Q ss_pred CcCCCeecCHHHHHHHHHHHHHHcCCCCC
Q 036612 73 GNLGWKYRPLEESIHDSDKNYEESGILHK 101 (102)
Q Consensus 73 ~~lg~~~~~l~e~i~~~~~~~~~~~~~~~ 101 (102)
+..| .+..+.+++++.++|.++.|+++.
T Consensus 17 rh~G-~~~~~~~~~~~l~~W~~~~~l~p~ 44 (154)
T COG3449 17 RHVG-DPATLKQTFEQLIAWRRENGLLPE 44 (154)
T ss_pred EeeC-cHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4556 444799999999999999998763
No 150
>PF11432 DUF3197: Protein of unknown function (DUF3197); InterPro: IPR024443 This domain, whose function is unknown, is found in bacterial proteins.; PDB: 1WN9_A 1WNA_A.
Probab=24.99 E-value=90 Score=18.73 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=20.4
Q ss_pred CcCCCeec-CHHHHHHHHHHHHHHcCC
Q 036612 73 GNLGWKYR-PLEESIHDSDKNYEESGI 98 (102)
Q Consensus 73 ~~lg~~~~-~l~e~i~~~~~~~~~~~~ 98 (102)
..+|=.+- .=++++.+.+.|+.+.|+
T Consensus 48 dAFGPafG~~G~~ALaELv~wl~~~G~ 74 (113)
T PF11432_consen 48 DAFGPAFGPEGERALAELVRWLQERGA 74 (113)
T ss_dssp EEESTTS-TTHHHHHHHHHHHHHHTT-
T ss_pred cccCcccCccHHHHHHHHHHHHHHcCC
Confidence 55666664 789999999999999987
No 151
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.96 E-value=1.3e+02 Score=19.60 Aligned_cols=31 Identities=10% Similarity=-0.057 Sum_probs=21.4
Q ss_pred CCceeHHHHHHHHHHHhcCCC--CCc-cEEEecC
Q 036612 13 RPLVDLRDVADVILVVYEKPE--AKR-RYICTSF 43 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~~ 43 (102)
..+.+++|+|+++..++.... ..| .|++.+.
T Consensus 217 ~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg 250 (256)
T PRK12745 217 PRWGEPEDVARAVAALASGDLPYSTGQAIHVDGG 250 (256)
T ss_pred CCCcCHHHHHHHHHHHhCCcccccCCCEEEECCC
Confidence 357799999999988886432 345 5666543
No 152
>PF09176 Mpt_N: Methylene-tetrahydromethanopterin dehydrogenase, N-terminal; InterPro: IPR015259 Prokaryotic methylene-tetrahydromethanopterin dehydrogenase catalyses the dehydrogenation of methylene-tetrahydromethanopterin during growth on one-carbon compounds such as methanol. It can also catalyse the reversible dehydrogenation of methylene-tetrahydrofolate, though at much lower efficiency []. The pterin domain of this protein is composed of two alpha-beta segments found at the N- and C-terminal ends of the polypeptide respectivly. This entry represents the N-terminal segment of the pterin domain, with a core comprising three alpha/beta/alpha layers in which each sheet contains four strands. ; PDB: 1LUA_A 1LU9_C.
Probab=24.89 E-value=91 Score=17.66 Aligned_cols=49 Identities=10% Similarity=0.059 Sum_probs=23.7
Q ss_pred ceeHHHHHHHHHHHhcCCCCCc--cEEEecCcccHHHHHHHHHHHc-CCCcC
Q 036612 15 LVDLRDVADVILVVYEKPEAKR--RYICTSFAIRMQALAVKIKIMF-LNYDY 63 (102)
Q Consensus 15 ~v~V~Dva~a~v~a~~~~~~~~--~~~~~~~~~s~~ei~~~i~~~~-p~~~~ 63 (102)
.-.|+++++..+..-.-..... .|+.+.....-.++.+..++.+ |++++
T Consensus 23 ~~~V~~LvqdaIFsR~P~~~~~TaiFIGG~d~~~a~dml~~ak~a~f~pF~v 74 (81)
T PF09176_consen 23 PDEVRGLVQDAIFSRGPKDLKRTAIFIGGRDVALAEDMLEAAKKAMFPPFRV 74 (81)
T ss_dssp TTTHHHHHHHHHSSS-GGGGGGEEEEEE-S-HHHHHHHHHHHHHH-BTTB--
T ss_pred HHHhhhhhcceeEccCCcCCceeEEEECCccHHHHHHHHHHHHHhccCCcEE
Confidence 3456777766543321111111 3444445566678888888875 65543
No 153
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.52 E-value=2.6e+02 Score=19.74 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=56.6
Q ss_pred CCcccCCCCCCceeHHHHHHH--HHHHhcCCCCCccE-EEecCcccHHHHHHHHHHHcCC-CcC-CCcc--cCCC-----
Q 036612 4 GNESLEDKNRPLVDLRDVADV--ILVVYEKPEAKRRY-ICTSFAIRMQALAVKIKIMFLN-YDY-SKSF--TKVD----- 71 (102)
Q Consensus 4 ~~~~~~~~~~~~v~V~Dva~a--~v~a~~~~~~~~~~-~~~~~~~s~~ei~~~i~~~~p~-~~~-p~~~--~~~~----- 71 (102)
.+-+.|...-+-|+|+|-++. .+.-+-.+.+ ++- ++++-.+|+..++....+..|. +.+ +... .+..
T Consensus 4 ~l~~~~~l~~~~v~vkdp~~v~~~l~~~v~gga-~~~~vIsdfd~TLSrfa~~~G~r~pS~~~Vfd~~~~~~~~e~~~k~ 82 (298)
T KOG3128|consen 4 PLLMNPLLGEEQVRVKDPTAVEAKLRKMVVGGA-GKLQVISDFDYTLSRFATEQGKRCPSCFGVFDDNVKRLKPECRAKF 82 (298)
T ss_pred ccccchhhCCcceeecChHHHHHHHHHHhcCCc-cceeEeecCchhHHHHHHhhcCcCCccccchhhhhhcCCHHHHHHH
Confidence 345567777888999998775 3333322222 244 5677889999999988887764 222 2111 1100
Q ss_pred ------cCcCCCeec-CHHHHHHHHHHHHHHc
Q 036612 72 ------EGNLGWKYR-PLEESIHDSDKNYEES 96 (102)
Q Consensus 72 ------~~~lg~~~~-~l~e~i~~~~~~~~~~ 96 (102)
-.-+-..|. +++|-+.-+.+||-+.
T Consensus 83 ~~LyhkY~PIEidP~ltieEKvp~MeeWW~kS 114 (298)
T KOG3128|consen 83 VALYHKYYPIEIDPVLTIEEKVPHMEEWWTKS 114 (298)
T ss_pred HHHHhhccCcccCCCCChhhhchHHHHHHhcc
Confidence 133345666 8888888888888654
No 154
>PRK07890 short chain dehydrogenase; Provisional
Probab=24.10 E-value=1.1e+02 Score=19.96 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.4
Q ss_pred CceeHHHHHHHHHHHhcC
Q 036612 14 PLVDLRDVADVILVVYEK 31 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~ 31 (102)
.+++++|+|++++.+++.
T Consensus 222 ~~~~~~dva~a~~~l~~~ 239 (258)
T PRK07890 222 RLPTDDEVASAVLFLASD 239 (258)
T ss_pred ccCCHHHHHHHHHHHcCH
Confidence 477899999999998874
No 155
>PRK06701 short chain dehydrogenase; Provisional
Probab=24.04 E-value=1.3e+02 Score=20.43 Aligned_cols=30 Identities=3% Similarity=-0.047 Sum_probs=21.2
Q ss_pred CCceeHHHHHHHHHHHhcCCC--CCc-cEEEec
Q 036612 13 RPLVDLRDVADVILVVYEKPE--AKR-RYICTS 42 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~--~~~-~~~~~~ 42 (102)
..+.+++|+|++++.++.... ..| .+++.+
T Consensus 252 ~~~~~~~dva~~~~~ll~~~~~~~~G~~i~idg 284 (290)
T PRK06701 252 QRPGQPEELAPAYVFLASPDSSYITGQMLHVNG 284 (290)
T ss_pred CCCcCHHHHHHHHHHHcCcccCCccCcEEEeCC
Confidence 457899999999999887543 345 455543
No 156
>KOG0625 consensus Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=23.82 E-value=2.1e+02 Score=21.70 Aligned_cols=44 Identities=7% Similarity=-0.045 Sum_probs=31.9
Q ss_pred CceeHHHHHHHHHHHhcCCCCCc-cEEEec-CcccHHHHHHHHHHH
Q 036612 14 PLVDLRDVADVILVVYEKPEAKR-RYICTS-FAIRMQALAVKIKIM 57 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~~~~-~~~~~~-~~~s~~ei~~~i~~~ 57 (102)
.--|.+..++|++.++..+...| ...+++ ..+=..+.+++|.++
T Consensus 32 qpnY~eNfvQa~~~a~~~~~~kgatLVVGGDGRyy~~~a~~~I~~i 77 (558)
T KOG0625|consen 32 QPNYTENFVQAIMNALPGEKSKGATLVVGGDGRYYNKEAIQIIAKI 77 (558)
T ss_pred CCchHHHHHHHHHhccccccccCceEEEcCCCcchhHHHHHHHHHH
Confidence 55689999999999998666667 555554 456667777777665
No 157
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=23.70 E-value=52 Score=19.33 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHcCCCC
Q 036612 85 SIHDSDKNYEESGILH 100 (102)
Q Consensus 85 ~i~~~~~~~~~~~~~~ 100 (102)
++.++++.|.+.|||.
T Consensus 36 ~~~~~L~YY~~igWIS 51 (99)
T PF04659_consen 36 NAADALDYYESIGWIS 51 (99)
T ss_pred cHHHHHHHHHHcCCcC
Confidence 4556667777777764
No 158
>KOG0886 consensus 40S ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=23.50 E-value=1.6e+02 Score=18.65 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=28.0
Q ss_pred eeHHH-HHHHHHHHhcCCCCCc--cEEEe-cCcccHHHHHHHHHHHcC
Q 036612 16 VDLRD-VADVILVVYEKPEAKR--RYICT-SFAIRMQALAVKIKIMFL 59 (102)
Q Consensus 16 v~V~D-va~a~v~a~~~~~~~~--~~~~~-~~~~s~~ei~~~i~~~~p 59 (102)
+.|.. ++..++.+|..+.... .-|+- ++++++.|++++.+.+.+
T Consensus 73 i~VvpSasaLiIkaLKEPpRDRKk~knikh~Gni~~deiv~iar~mr~ 120 (167)
T KOG0886|consen 73 IEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVEIARIMRP 120 (167)
T ss_pred eEEcccHHHHHHHHhcCCcchhhhhccccccCcccHHHHHHHHHHhhh
Confidence 34433 4455788888765433 23664 678999998887766544
No 159
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=23.34 E-value=94 Score=16.30 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHcCCC
Q 036612 85 SIHDSDKNYEESGIL 99 (102)
Q Consensus 85 ~i~~~~~~~~~~~~~ 99 (102)
.+.++++.|++.|+|
T Consensus 44 tv~r~l~~l~~~g~I 58 (76)
T PF13545_consen 44 TVSRILKRLKDEGII 58 (76)
T ss_dssp HHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHCCCE
Confidence 456666666666664
No 160
>PRK06123 short chain dehydrogenase; Provisional
Probab=23.04 E-value=1.2e+02 Score=19.61 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=18.8
Q ss_pred eeHHHHHHHHHHHhcCCC--CCc-cEEEec
Q 036612 16 VDLRDVADVILVVYEKPE--AKR-RYICTS 42 (102)
Q Consensus 16 v~V~Dva~a~v~a~~~~~--~~~-~~~~~~ 42 (102)
.+++|+|++++.++.... ..| .|++.+
T Consensus 217 ~~~~d~a~~~~~l~~~~~~~~~g~~~~~~g 246 (248)
T PRK06123 217 GTAEEVARAILWLLSDEASYTTGTFIDVSG 246 (248)
T ss_pred cCHHHHHHHHHHHhCccccCccCCEEeecC
Confidence 478999999998887532 335 565543
No 161
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=22.97 E-value=91 Score=21.28 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHcCCCC
Q 036612 82 LEESIHDSDKNYEESGILH 100 (102)
Q Consensus 82 l~e~i~~~~~~~~~~~~~~ 100 (102)
.++|-+++.+|++++|+++
T Consensus 231 ~~~G~~da~~~l~~~~~~~ 249 (252)
T cd07221 231 CLRGYLDAFRFLEENGICN 249 (252)
T ss_pred HHhhHHHHHHHHHHCCCcc
Confidence 4567888999999999875
No 162
>PRK07825 short chain dehydrogenase; Provisional
Probab=22.70 E-value=91 Score=20.72 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=17.9
Q ss_pred CCceeHHHHHHHHHHHhcCCC
Q 036612 13 RPLVDLRDVADVILVVYEKPE 33 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~~~ 33 (102)
..+++++|+|++++.++.++.
T Consensus 197 ~~~~~~~~va~~~~~~l~~~~ 217 (273)
T PRK07825 197 FKNVEPEDVAAAIVGTVAKPR 217 (273)
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 458999999999999998654
No 163
>PRK06179 short chain dehydrogenase; Provisional
Probab=22.43 E-value=1.4e+02 Score=19.70 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=19.3
Q ss_pred ceeHHHHHHHHHHHhcCCCCCccEEEe
Q 036612 15 LVDLRDVADVILVVYEKPEAKRRYICT 41 (102)
Q Consensus 15 ~v~V~Dva~a~v~a~~~~~~~~~~~~~ 41 (102)
....+|+|++++.++..+...-+|..+
T Consensus 214 ~~~~~~va~~~~~~~~~~~~~~~~~~~ 240 (270)
T PRK06179 214 ADAPEVVADTVVKAALGPWPKMRYTAG 240 (270)
T ss_pred CCCHHHHHHHHHHHHcCCCCCeeEecC
Confidence 357899999999999765433366554
No 164
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.89 E-value=1.1e+02 Score=14.42 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=8.6
Q ss_pred HHHHHHHHcCCCCC
Q 036612 88 DSDKNYEESGILHK 101 (102)
Q Consensus 88 ~~~~~~~~~~~~~~ 101 (102)
.++..|.+.|++++
T Consensus 15 ~tlr~~~~~g~l~~ 28 (49)
T cd04761 15 STLRYYERIGLLSP 28 (49)
T ss_pred HHHHHHHHCCCCCC
Confidence 45666667777653
No 165
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=21.87 E-value=92 Score=21.13 Aligned_cols=18 Identities=6% Similarity=0.239 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 036612 82 LEESIHDSDKNYEESGIL 99 (102)
Q Consensus 82 l~e~i~~~~~~~~~~~~~ 99 (102)
.++|..|+++|++++|+|
T Consensus 228 ~~~g~~da~~~l~~~~~~ 245 (245)
T cd07218 228 CQQGFDDALRFLHRNNLI 245 (245)
T ss_pred HHhhhHHHHHHHHHcCCC
Confidence 466888888999988875
No 166
>PRK12937 short chain dehydrogenase; Provisional
Probab=21.73 E-value=1.3e+02 Score=19.44 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=15.3
Q ss_pred CceeHHHHHHHHHHHhcCC
Q 036612 14 PLVDLRDVADVILVVYEKP 32 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~ 32 (102)
-+.+++|+|++++.++..+
T Consensus 211 ~~~~~~d~a~~~~~l~~~~ 229 (245)
T PRK12937 211 RLGTPEEIAAAVAFLAGPD 229 (245)
T ss_pred CCCCHHHHHHHHHHHcCcc
Confidence 3568999999998888654
No 167
>PF04784 DUF547: Protein of unknown function, DUF547; InterPro: IPR006869 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans and Arabidopsis thaliana (Mouse-ear cress).
Probab=21.63 E-value=1.6e+02 Score=17.40 Aligned_cols=57 Identities=9% Similarity=0.056 Sum_probs=33.4
Q ss_pred cEEEecCcccHHHHHHHHHHHc----CCCcCC--CcccCC-CcCc--CCCeecCHHHHHHHHHHHH
Q 036612 37 RYICTSFAIRMQALAVKIKIMF----LNYDYS--KSFTKV-DEGN--LGWKYRPLEESIHDSDKNY 93 (102)
Q Consensus 37 ~~~~~~~~~s~~ei~~~i~~~~----p~~~~p--~~~~~~-~~~~--lg~~~~~l~e~i~~~~~~~ 93 (102)
+|.++|..+|+.+|-..|-+.. ++.++- -.+... .+.. -=|++..+++-|.+....|
T Consensus 51 ~y~Igg~~~SL~dIe~~ILR~~~~~~~DprihFaL~cgs~s~P~lr~~~yt~~~l~~qL~~a~~~f 116 (117)
T PF04784_consen 51 RYNIGGQRFSLDDIEHGILRGNRPPWPDPRIHFALNCGSKSCPPLRREAYTAENLDEQLEEAAREF 116 (117)
T ss_pred EEEECCEEecHHHHHHhhccCCCCCCCCCceeeeeecCCCCChhhhhhccCHHHHHHHHHHHHHhh
Confidence 5778889999999987666642 221211 111111 1222 2566677888887776654
No 168
>KOG3236 consensus Predicted membrane protein [Function unknown]
Probab=21.42 E-value=72 Score=21.39 Aligned_cols=43 Identities=9% Similarity=0.223 Sum_probs=27.5
Q ss_pred cCCCCCCceeHHHHHHHHHHHhcCCCCCc-cEEEecCcccHHHH
Q 036612 8 LEDKNRPLVDLRDVADVILVVYEKPEAKR-RYICTSFAIRMQAL 50 (102)
Q Consensus 8 ~~~~~~~~v~V~Dva~a~v~a~~~~~~~~-~~~~~~~~~s~~ei 50 (102)
++..-+.-+|+-|++-.+...-..+..++ +|.+++=.+-+.|.
T Consensus 68 ~~e~LK~s~di~dl~Gl~li~s~~~~~~~~k~~~~gLGWafA~s 111 (225)
T KOG3236|consen 68 VPEFLKCSADIADLIGLHLIMSRFPGKGEVKFVVAGLGWAFAES 111 (225)
T ss_pred HHHHHHhhhhHHHHhhHHHHHhcCCCCCceeEEEeechHHHHHH
Confidence 34444556788899888877766665555 67766655655443
No 169
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=21.35 E-value=1.4e+02 Score=19.45 Aligned_cols=27 Identities=4% Similarity=0.059 Sum_probs=19.7
Q ss_pred CceeHHHHHHHHHHHhcCCC--CCccEEE
Q 036612 14 PLVDLRDVADVILVVYEKPE--AKRRYIC 40 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~--~~~~~~~ 40 (102)
.+++++|++++++.++.... ..|.++.
T Consensus 219 ~~~~~~~~a~~~~~l~~~~~~~~~G~~i~ 247 (256)
T PRK06124 219 RWGRPEEIAGAAVFLASPAASYVNGHVLA 247 (256)
T ss_pred CCCCHHHHHHHHHHHcCcccCCcCCCEEE
Confidence 47899999999999997643 3455443
No 170
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=21.09 E-value=88 Score=20.35 Aligned_cols=19 Identities=11% Similarity=0.321 Sum_probs=16.3
Q ss_pred CCceeHHHHHHHHHHHhcC
Q 036612 13 RPLVDLRDVADVILVVYEK 31 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a~~~ 31 (102)
..+++++|+|++++.++..
T Consensus 214 ~~~~~~~dva~~~~~l~~~ 232 (252)
T PRK08220 214 GKIARPQEIANAVLFLASD 232 (252)
T ss_pred cccCCHHHHHHHHHHHhcc
Confidence 4689999999999998864
No 171
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.08 E-value=1e+02 Score=16.34 Aligned_cols=25 Identities=16% Similarity=0.318 Sum_probs=17.9
Q ss_pred cCCCeecCHHHHHHHHHHHHHHcCC
Q 036612 74 NLGWKYRPLEESIHDSDKNYEESGI 98 (102)
Q Consensus 74 ~lg~~~~~l~e~i~~~~~~~~~~~~ 98 (102)
+|||.+..-.+-|+++=+.+.++|+
T Consensus 11 ~lGf~~~tA~~IIrqAK~~lV~~G~ 35 (59)
T PF11372_consen 11 ELGFSESTARDIIRQAKALLVQKGF 35 (59)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4688777777777877777776664
No 172
>PF05841 Apc15p: Apc15p protein; InterPro: IPR008402 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. Members of this family are components of the anaphase-promoting complex homologous to subunit Apc15/MND2 [].; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0031145 anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process, 0005680 anaphase-promoting complex
Probab=20.95 E-value=34 Score=20.83 Aligned_cols=21 Identities=19% Similarity=0.569 Sum_probs=15.6
Q ss_pred CcCCCeec-CHHHHHHHHHHHHHH
Q 036612 73 GNLGWKYR-PLEESIHDSDKNYEE 95 (102)
Q Consensus 73 ~~lg~~~~-~l~e~i~~~~~~~~~ 95 (102)
+.|||.+. |+ ||..|+..+++
T Consensus 92 r~~G~~wikPi--Gv~KTm~~~~e 113 (125)
T PF05841_consen 92 RNFGYNWIKPI--GVPKTMQQMRE 113 (125)
T ss_pred HHhCccceeCC--CccHHHHHHHH
Confidence 77898877 77 77777777664
No 173
>PRK10721 hypothetical protein; Provisional
Probab=20.58 E-value=1.2e+02 Score=16.47 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=10.5
Q ss_pred CCceeHHHHHHHHHHH
Q 036612 13 RPLVDLRDVADVILVV 28 (102)
Q Consensus 13 ~~~v~V~Dva~a~v~a 28 (102)
.-|+|++|+|.+..-.
T Consensus 3 mkW~D~~dIA~~L~e~ 18 (66)
T PRK10721 3 LKWTDSREIGEALYDA 18 (66)
T ss_pred CcccCHHHHHHHHHHH
Confidence 4577777777766543
No 174
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=20.31 E-value=1e+02 Score=14.31 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHcCCCC
Q 036612 85 SIHDSDKNYEESGILH 100 (102)
Q Consensus 85 ~i~~~~~~~~~~~~~~ 100 (102)
++.+.++.+.+.|++.
T Consensus 24 tv~~~l~~L~~~g~l~ 39 (48)
T smart00419 24 TVSRTLKRLEKEGLIS 39 (48)
T ss_pred HHHHHHHHHHHCCCEE
Confidence 4566666666666653
No 175
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=20.19 E-value=1.2e+02 Score=17.37 Aligned_cols=20 Identities=5% Similarity=-0.051 Sum_probs=17.1
Q ss_pred cCcccHHHHHHHHHHHcCCC
Q 036612 42 SFAIRMQALAVKIKIMFLNY 61 (102)
Q Consensus 42 ~~~~s~~ei~~~i~~~~p~~ 61 (102)
+...+++++.+.|.+.+|+.
T Consensus 20 ~~~L~F~DvL~~I~~vlp~a 39 (91)
T cd06395 20 GPQLLFRDVLDVIGQVLPEA 39 (91)
T ss_pred cccccHHHHHHHHHHhcccc
Confidence 45689999999999999864
No 176
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=20.09 E-value=1.2e+02 Score=19.74 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=19.4
Q ss_pred CceeHHHHHHHHHHHhcCCC--CCccEEE
Q 036612 14 PLVDLRDVADVILVVYEKPE--AKRRYIC 40 (102)
Q Consensus 14 ~~v~V~Dva~a~v~a~~~~~--~~~~~~~ 40 (102)
.++.++|+|+++..++.... ..|.++.
T Consensus 218 ~~~~~~~~a~~~~~l~~~~~~~~~g~~~~ 246 (254)
T TIGR02415 218 RPSEPEDVAGLVSFLASEDSDYITGQSIL 246 (254)
T ss_pred CCCCHHHHHHHHHhhcccccCCccCcEEE
Confidence 37889999999999998653 2354443
Done!