BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036615
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 108/476 (22%), Positives = 212/476 (44%), Gaps = 45/476 (9%)
Query: 144 IELIPEETIEDLKNIAERMIAAGYLRECTQVYGSVRKSAIDSSFKRL-----------GV 192
+E +PE + D+ I+ ++ G ++ VY +R S +D S K L GV
Sbjct: 106 LEHLPESVLRDVVRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRKSSSSSGV 165
Query: 193 EKLSIGDIQRLEW------------DALETKIRRWIRAAKVCVRILFASEKRLCEQIFDG 240
+R + D L+ + +I V++ + + L E I +
Sbjct: 166 PYSPAIPNKRKDTPTKKPIKRPGRDDMLDVETDAYIHCVSAFVKLAQSEYRLLMEIIPEH 225
Query: 241 VGTAIDDACFMETVKGPAIQLFNFAEAI--SISRRSPEKLFKILDLHDALVELMPDIEIV 298
D+ + + G ++ N A +I R + + + L + P+ + V
Sbjct: 226 HQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQV 285
Query: 299 FDSKSSDLIRVQAAEILSRLAEAARGILSEFENAVLKEPSK-VPVP-GGTIHPLTRYVMN 356
++ + + +++ + L +F + + +P K +P GT+H LT +
Sbjct: 286 LQGTAAS-TKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAIL 344
Query: 357 YISLISDYKQTLIELIMSKPSTGSRYSGDPSTPDMDFAELEGKTPLALHLIWVIVILQFN 416
++ + D+++T ++ S+ ++ S ++ +F+ K L+ ++ V+ LQ N
Sbjct: 345 FLQQLLDFQETAGAMLASQETSSSA-----TSYSSEFS----KRLLSTYICKVLGNLQLN 395
Query: 417 LDGKSKHYKDASLVHLFMMNNVHYIVQKVKSSPELREMIG---DDYLRKMTGKFRQAATN 473
L KSK Y+D +L +F+ NN +YI++ ++ S EL +++ R Q
Sbjct: 396 LLSKSKVYEDPALSAIFLHNNYNYILKSLEKS-ELIQLVAVTQKTAERSYREHIEQQIQT 454
Query: 474 YQRATWVKVLYCLRDEGL--HXXXXXXXXXXXXALRERFKSFNAMFEEVHRTQATWLIPD 531
YQR +W+KV + ++ L ++ERFK FN EE+ + Q W IPD
Sbjct: 455 YQR-SWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVWAIPD 513
Query: 532 SQLREELRISISEKLIPAYRSFLGRFRSHIESSKHPENYIKYSVEDLETSVLDFFE 587
++ R+++R + + + Y +FL R+ S + +K+PE YIKY VE + + F+
Sbjct: 514 TEQRDKIRQAQKDIVKETYGAFLHRYGS-VPFTKNPEKYIKYRVEQVGDMIDRLFD 568
>pdb|2PFV|A Chain A, S. Cerevisiae Exo70 With Additional Residues To 2.1
Angrstrom Resolution
Length = 563
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 420 KSKHYKDASLVHLFMMNNVHYIVQKVKSSPELREMIGDDYLRKMTGKFRQAATNYQRATW 479
K+KH + + F++ N+ + Q V+ S EL M+ + ++ + ++ +Y + W
Sbjct: 405 KNKHKQR---IGFFILMNLTLVEQIVEKS-ELNLMLAGEGHSRLE-RLKKRYISYMVSDW 459
Query: 480 VKVLYCLRDEGLHXXXXXXXXXXXXALRERFKSFNAMFEEVHRTQATWLIPDSQLREELR 539
+ L D + ++E+F+ FN FE++ + + D L+ L+
Sbjct: 460 RDLTANLMD-SVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLK 518
Query: 540 ISISEKLIPAYRSFLGRFRSHIESSKHPENYIKYSVEDLETSVLD 584
I ++P Y F R++ +S K+P +IKY+ ++L T+VL+
Sbjct: 519 SEIISLVMPMYERFYSRYK---DSFKNPRKHIKYTPDEL-TTVLN 559
>pdb|2B1E|A Chain A, The Structures Of Exocyst Subunit Exo70p And The Exo84p C-
Terminal Domains Reveal A Common Motif
Length = 564
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 420 KSKHYKDASLVHLFMMNNVHYIVQKVKSSPELREMIGDDYLRKMTGKFRQAATNYQRATW 479
K+KH + + F++ N+ + Q V+ S EL M+ + ++ + ++ +Y + W
Sbjct: 406 KNKHKQR---IGFFILMNLTLVEQIVEKS-ELNLMLAGEGHSRLE-RLKKRYISYMVSDW 460
Query: 480 VKVLYCLRDEGLHXXXXXXXXXXXXALRERFKSFNAMFEEVHRTQATWLIPDSQLREELR 539
+ L D + ++E+F+ FN FE++ + + D L+ L+
Sbjct: 461 RDLTANLMD-SVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLK 519
Query: 540 ISISEKLIPAYRSFLGRFRSHIESSKHPENYIKYSVEDLETSVLD 584
I ++P Y F R++ +S K+P +IKY+ ++L T+VL+
Sbjct: 520 SEIISLVMPMYERFYSRYK---DSFKNPRKHIKYTPDEL-TTVLN 560
>pdb|2B7M|A Chain A, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|B Chain B, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|C Chain C, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|D Chain D, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
Length = 566
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 420 KSKHYKDASLVHLFMMNNVHYIVQKVKSSPELREMIGDDYLRKMTGKFRQAATNYQRATW 479
K+KH + + F++ N+ + Q V+ S + G+ + R + ++ +Y + W
Sbjct: 408 KNKHKQR---IGFFILXNLTLVEQIVEKSELNLXLAGEGHSR--LERLKKRYISYXVSDW 462
Query: 480 VKVLYCLRDEGLHXXXXXXXXXXXXALRERFKSFNAMFEEVHRTQATWLIPDSQLREELR 539
+ L D + ++E+F+ FN FE++ + + D L+ L+
Sbjct: 463 RDLTANLXD-SVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLK 521
Query: 540 ISISEKLIPAYRSFLGRFRSHIESSKHPENYIKYSVEDLETSVLD 584
I + P Y F R++ +S K+P +IKY+ ++L T+VL+
Sbjct: 522 SEIISLVXPXYERFYSRYK---DSFKNPRKHIKYTPDEL-TTVLN 562
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,343,895
Number of Sequences: 62578
Number of extensions: 556246
Number of successful extensions: 1489
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1472
Number of HSP's gapped (non-prelim): 12
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)