Query 036615
Match_columns 600
No_of_seqs 205 out of 491
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:50:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2344 Exocyst component prot 100.0 1E-111 3E-116 942.0 55.8 510 40-596 111-622 (623)
2 PF03081 Exo70: Exo70 exocyst 100.0 2.6E-78 5.7E-83 648.3 27.8 366 212-585 1-371 (371)
3 PF06419 COG6: Conserved oligo 98.8 4.2E-05 9E-10 87.7 37.6 369 166-582 205-618 (618)
4 KOG3758 Uncharacterized conser 97.5 0.24 5.2E-06 55.4 35.6 383 149-583 221-652 (655)
5 PF04129 Vps52: Vps52 / Sac2 f 97.3 0.045 9.8E-07 61.6 23.4 185 227-448 300-485 (508)
6 KOG1961 Vacuolar sorting prote 96.6 1.2 2.7E-05 49.7 25.8 77 343-447 474-550 (683)
7 PF09763 Sec3_C: Exocyst compl 96.3 1.3 2.8E-05 52.0 25.7 220 311-556 439-694 (701)
8 PF10191 COG7: Golgi complex c 87.3 39 0.00085 40.2 19.4 134 150-301 198-335 (766)
9 KOG2148 Exocyst protein Sec3 [ 87.3 41 0.00089 38.6 18.0 216 311-558 605-839 (867)
10 PF08385 DHC_N1: Dynein heavy 62.3 1.7E+02 0.0037 33.2 14.9 90 273-372 326-419 (579)
11 PF07393 Sec10: Exocyst comple 53.8 3.9E+02 0.0084 31.5 16.2 105 152-266 128-246 (710)
12 KOG1916 Nuclear protein, conta 47.2 1.2E+02 0.0025 36.5 9.9 51 503-555 1014-1065(1283)
13 KOG3821 Heparin sulfate cell s 46.2 28 0.0006 39.1 4.7 71 503-587 97-168 (563)
14 PHA01746 hypothetical protein 45.4 8.2 0.00018 33.9 0.4 39 521-577 59-97 (131)
15 PF15264 TSSC4: Tumour suppres 43.0 7.7 0.00017 34.8 -0.1 21 559-579 53-73 (115)
16 TIGR02553 SipD_IpaD_SspD type 39.3 2.2E+02 0.0048 29.9 9.7 35 452-488 114-148 (308)
17 KOG2022 Nuclear transport rece 31.0 6.4E+02 0.014 30.5 12.6 39 293-331 549-587 (982)
18 COG2733 Predicted membrane pro 26.8 5E+02 0.011 28.4 10.1 91 469-584 289-383 (415)
19 KOG1925 Rac1 GTPase effector F 24.4 7.7E+02 0.017 27.8 11.0 80 424-516 506-591 (817)
20 KOG2047 mRNA splicing factor [ 23.1 61 0.0013 37.4 2.6 75 509-585 83-179 (835)
21 KOG4344 Uncharacterized conser 22.3 3.2E+02 0.007 31.6 7.9 22 431-452 968-990 (1121)
22 PF01153 Glypican: Glypican; 22.0 1.6E+02 0.0035 33.8 5.8 70 504-587 90-160 (557)
No 1
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-111 Score=941.98 Aligned_cols=510 Identities=51% Similarity=0.836 Sum_probs=448.6
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCCCCCCCCCCCCCCChhHHhhhcccccccccCCCCCcc
Q 036615 40 KVNF--AIQIAMARLEDEFRNILLAHIHAFDVDSLATDPSSSSCSRTESGGDHFDDDDEDRQQLGQEQEKDHLDSTTSST 117 (600)
Q Consensus 40 ~a~~--l~~~am~~Le~EF~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (600)
+++. ++|.||.+||+||++||..|+.+++|+.+...++..+. ..+++.+ ... ..
T Consensus 111 ~~~~d~l~~~am~~le~EF~~il~~~r~~~~~~~~~~~~~~~~~-------~~~~~~~-------~~~----------~~ 166 (623)
T KOG2344|consen 111 KAQADSLLQIAMSRLEKEFRQILENNREELDPERLSVRLRSSLN-------SKDEEAS-------LNS----------DS 166 (623)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhcccccchHhhhhccccccc-------ccccccc-------ccc----------Cc
Confidence 5555 99999999999999999999999999988665432100 0000000 000 00
Q ss_pred cccccccccCCCccccccCCCccccccCCCChhHHHHHHHHHHHHHHcCCchHHHHHHHHhhHHHHHHHHHhcCccccch
Q 036615 118 TYDVLKHSESNTSVSSSYRSTSCIREIELIPEETIEDLKNIAERMIAAGYLRECTQVYGSVRKSAIDSSFKRLGVEKLSI 197 (600)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~L~~Ia~~m~~~g~~~ec~~~Y~~~R~~~l~~sL~~L~~e~ls~ 197 (600)
.+....+.++ .+..+..++.+|++++.+|+.||++|+++||.++|+++|..+|+++++++|..||++++++
T Consensus 167 ~~~~~~~~~~---------~~~~~~~~~~~~~~v~~dLk~Ia~~mi~~gy~~eC~~~Y~~vrk~i~~e~l~~L~~e~ls~ 237 (623)
T KOG2344|consen 167 KYSALSDEES---------FGDDEIEPDLFPPDVMTDLKAIAQRMIAAGYEKECFKVYKSIRKSILDESLVNLGVEKLSI 237 (623)
T ss_pred cccccccccc---------ccCceeeccCCCchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhcCeeeccH
Confidence 0111111111 1233445799999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHhhhHHHHHHHHHHHHHhhcCChhH
Q 036615 198 GDIQRLEWDALETKIRRWIRAAKVCVRILFASEKRLCEQIFDGVGTAIDDACFMETVKGPAIQLFNFAEAISISRRSPEK 277 (600)
Q Consensus 198 ~~v~k~~~~~le~ki~~wi~~~~~~vk~L~~~Er~L~~~Vf~~~~~~~~~~~F~~i~~~~~~~Ll~f~~~va~~~rspek 277 (600)
+++++|+|++++.+|++|++++++++++||++|+.||++||++.+...+ .||.+|++.++++||+||++|++++|+|||
T Consensus 238 ~~vq~~~we~le~~I~~Wi~~~kv~v~~lf~~E~~Lcd~If~~~~~~~~-~cF~eI~~~~~~~ll~F~eava~~kr~pEk 316 (623)
T KOG2344|consen 238 EDVQRMDWEVLEGKIKKWIKAVKVAVSVLFEGEKKLCDQIFSDLESIVE-SCFPEIVKEAALQLLSFPEAVAISKRSPEK 316 (623)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCccchHHH-HHHHHHHHHHHHHhhccchheeeccCCHHH
Confidence 9999999999999999999999999999999999999999999765344 999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHhhhHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccHHHHHHH
Q 036615 278 LFKILDLHDALVELMPDIEIVFDSKSSDLIRVQAAEILSRLAEAARGILSEFENAVLKEPSKVPVPGGTIHPLTRYVMNY 357 (600)
Q Consensus 278 lf~lLdmye~L~~l~p~~~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~~~ef~~~I~~~~sk~~~~dG~VH~lT~~vmny 357 (600)
+|++||||+++.+++|+|+.+|++++|+.+|.++..++++|+++++++|.||++.|++|++++|++||||||||+|||||
T Consensus 317 lf~iLd~y~~i~~l~p~ie~lF~~~~~s~vr~~~~~~~~rL~~~~~~~~~efe~~I~~d~sk~pv~gG~VHpLTryvmny 396 (623)
T KOG2344|consen 317 LFKLLDLYETIVELRPDIERLFSDASCSEVRSQALSLLKRLGEGVRSIFVEFESAIRKDSSKTPVPGGGVHPLTRYVMNY 396 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCccccccCCCcHHHHHHHHHHHHHHhHHhhhhcCccchhhhHHhhhh
Q 036615 358 ISLISDYKQTLIELIMSKPSTGSRYSGDPSTPDMDFAELEGKTPLALHLIWVIVILQFNLDGKSKHYKDASLVHLFMMNN 437 (600)
Q Consensus 358 l~~L~~y~~~L~~iL~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~i~~ii~~L~~nLe~KSk~ykd~aL~~lFLmNN 437 (600)
|+.|++|+++|.++|..|+ ... ...+. +.+++...++++.+++|||..|++||++||+.|+|++|+|||||||
T Consensus 397 l~~L~dy~~tL~~il~~~~-~~~-----~~~~~-~~~~~~~~s~l~~~~~~ii~~L~~nLd~Ks~~Y~D~aL~~lFlmNN 469 (623)
T KOG2344|consen 397 LNFLADYKDTLEQLLMEDP-VDT-----SLPKS-ESEDESSNSLLAVHIARIILALECNLDTKSKLYKDPALSYLFLMNN 469 (623)
T ss_pred HHHHHHHHHHHHHHHhccc-ccc-----ccCcc-cccccccccHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHHHHhh
Confidence 9999999999999999764 110 00011 1122334589999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCChhHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccCCccCCCCCCccchHHHHHHHHHHHHHH
Q 036615 438 VHYIVQKVKSSPELREMIGDDYLRKMTGKFRQAATNYQRATWVKVLYCLRDEGLHVSGGFSSGVSKSALRERFKSFNAMF 517 (600)
Q Consensus 438 ~~yI~~~v~~S~~L~~lLG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~d~~~~~sg~~~~~~~r~~iKekfk~FN~~F 517 (600)
+|||+++|+++ +|+.+||++|+++|..+++||++.|++++|++|+++|++++... |+ .++|+.+||||++||++|
T Consensus 470 ~~yiv~kvkss-~L~~llGd~wl~kh~~~~~qy~~~Y~r~sW~~vl~~L~~~~s~~-~~---~~~~~~~Kerfk~FN~~F 544 (623)
T KOG2344|consen 470 LHYIVQKVKSS-ELRLLLGDDWLRKHEEKLRQYATSYERESWGKVLSLLTDEGSSS-GG---KKSKEVLKERFKLFNEQF 544 (623)
T ss_pred HHHHHHHHhcc-hHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cc---ccCHHHHHHHHHHHHHHH
Confidence 99999999965 99999999999999999999999999999999999999987321 21 478999999999999999
Q ss_pred HHHHHHccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccCHHHHHHHHHHhhCCCCCCCCcc
Q 036615 518 EEVHRTQATWLIPDSQLREELRISISEKLIPAYRSFLGRFRSHIESSKHPENYIKYSVEDLETSVLDFFEGYPVSQHLR 596 (600)
Q Consensus 518 EE~~~~Q~~w~VpD~~LRe~Lr~~i~~~ViPaY~~F~~ky~~~~~~~k~~~KYiKYtpedle~~L~~LFeg~~~~~~~~ 596 (600)
||+|++|++|+||||+||++||.+|+++|+|+|++||+||+..+ .+|||+|||||||+|||++|++||+|++.+..+|
T Consensus 545 eEv~k~Qs~wvV~D~~Lr~eLk~si~~~v~P~Yr~F~~r~~~~~-~~k~~~kyikYtpedlE~~L~dLF~g~~~~~s~~ 622 (623)
T KOG2344|consen 545 EEVYKKQSQWVVPDPKLREELKISISEKVVPAYRSFYGRYRNSV-SGKNPEKYIKYTPEDLENYLSDLFEGSPSSPSGR 622 (623)
T ss_pred HHHHHhhCceecccHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCCCcccccCHHHHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999877 5999999999999999999999999999655544
No 2
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=100.00 E-value=2.6e-78 Score=648.25 Aligned_cols=366 Identities=43% Similarity=0.767 Sum_probs=315.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHhhhHHHHHHHHHHHHH---hhcCChhHHHHHhhHHHHH
Q 036615 212 IRRWIRAAKVCVRILFASEKRLCEQIFDGVGTAIDDACFMETVKGPAIQLFNFAEAIS---ISRRSPEKLFKILDLHDAL 288 (600)
Q Consensus 212 i~~wi~~~~~~vk~L~~~Er~L~~~Vf~~~~~~~~~~~F~~i~~~~~~~Ll~f~~~va---~~~rspeklf~lLdmye~L 288 (600)
|++||.+++++++.|+++|++||++||+..++ ..+.||.+|+++++..|++||++|+ .+.++|+++|.+||||++|
T Consensus 1 ~~~wi~~~~~~~~~l~~~E~~L~~~vf~~~~~-~~~~~f~~i~~~~~~~ll~~~~~v~~~~~~~~~~~~lf~ll~~~~~l 79 (371)
T PF03081_consen 1 IKRWIQAYKVALKKLFQSERRLCDQVFPESSS-IADECFAEIAKPPLLQLLNFADAVASVRNSQRSPEKLFELLDMYEAL 79 (371)
T ss_dssp T-SHHHHHHHHHHHHHHHHHHHHHHHSSCCCT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHTCCCCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHH
Confidence 67999999999999999999999999999653 6899999999999999999999999 7889999999999999999
Q ss_pred HhhhHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCCcccccHHHHHHHHHHHHhhHH
Q 036615 289 VELMPDIEIVFDSKSSDLIRVQAAEILSRLAEAARGILSEFENAVLK--EPSKVPVPGGTIHPLTRYVMNYISLISDYKQ 366 (600)
Q Consensus 289 ~~l~p~~~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~~~ef~~~I~~--~~sk~~~~dG~VH~lT~~vmnyl~~L~~y~~ 366 (600)
.+++|+++.+|.+.++..++.++.+++++|+++++++|.+|.+.|+. ++.+.+++||+|||+|++|||||+.|++|++
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~~~~i~~~~~~~~~~p~dg~Vh~lT~~vm~yl~~L~~y~~ 159 (371)
T PF03081_consen 80 SELLPDLDSLFSGESCESIRQEFDELLKKLREAIRKILEEFEESIKNDSDSSSSVPSDGGVHPLTSYVMNYLKRLAEYRD 159 (371)
T ss_dssp HHHHCCCHHCTCC-S-HHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGCS-TTS---HHHHHHHHHHHHHHCTHH
T ss_pred HHHhHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 7888888999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCCccccccCCCcHHHHHHHHHHHHHHhHHhhhhcCccchhhhHHhhhhHHHHHHHhh
Q 036615 367 TLIELIMSKPSTGSRYSGDPSTPDMDFAELEGKTPLALHLIWVIVILQFNLDGKSKHYKDASLVHLFMMNNVHYIVQKVK 446 (600)
Q Consensus 367 ~L~~iL~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~i~~ii~~L~~nLe~KSk~ykd~aL~~lFLmNN~~yI~~~v~ 446 (600)
+|+.+|.+.....+. .+ +..+......+++.++++.+|.++|++|+.||++||+.|+|++|++||||||+|||.++|+
T Consensus 160 ~l~~il~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ks~~y~d~~l~~iFLlNN~~yI~~~~~ 237 (371)
T PF03081_consen 160 TLESILQSDGDGNWL-SE-SGPPSESSSSTDSQSSLSSYIADIISALESNLEAKSKSYKDPALRYIFLLNNYHYILKKLK 237 (371)
T ss_dssp HHHHCCCTT-GGGGS--S-S--GGGS---CCHHHHHHHHHHHHHHHHHHHHHHHHCCHCTHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHhccccccc-cc-cccccccccccCccchHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhh
Confidence 999999864322100 00 0000000001234578999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccCCccCCCCCCccchHHHHHHHHHHHHHHHHHHHHccc
Q 036615 447 SSPELREMIGDDYLRKMTGKFRQAATNYQRATWVKVLYCLRDEGLHVSGGFSSGVSKSALRERFKSFNAMFEEVHRTQAT 526 (600)
Q Consensus 447 ~S~~L~~lLG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~d~~~~~sg~~~~~~~r~~iKekfk~FN~~FEE~~~~Q~~ 526 (600)
+| +|..+||++|.+++..++++|++.|++.+|+||+++|.+++.. .++..++++|+.+|+||++||.+|||+|+.|+.
T Consensus 238 ~s-~l~~~lg~~~~~~~~~~~~~~~~~Y~~~sW~~v~~~L~~~~~~-~~~~~~~~~~~~~ke~f~~Fn~~fee~~~~q~~ 315 (371)
T PF03081_consen 238 RS-ELKDLLGDDWEQRLSSKIEQYIKSYLRSSWGPVLSCLSDDSSS-SGGKLSSKERELLKEKFKKFNSAFEEIYKAQKT 315 (371)
T ss_dssp TS-HHHHCCTTCHHHHHHHHHHHHHHHHHCHHHHHHHCTCCHHCC--T-SSS-HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hc-chhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccCCCCCccHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 98 9999999999999999999999999999999999999885321 223456788999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccCHHHHHHHHHHh
Q 036615 527 WLIPDSQLREELRISISEKLIPAYRSFLGRFRSHIESSKHPENYIKYSVEDLETSVLDF 585 (600)
Q Consensus 527 w~VpD~~LRe~Lr~~i~~~ViPaY~~F~~ky~~~~~~~k~~~KYiKYtpedle~~L~~L 585 (600)
|+||||+||++||++|+++|+|+|++||+||+.. .+ ||+|||||||++||++|++|
T Consensus 316 ~~vpD~~LR~~Lr~~i~~~v~p~Y~~F~~~~~~~-~~--~~~Kyikyt~~~le~~l~~L 371 (371)
T PF03081_consen 316 WKVPDPELREELRREIKEKVVPAYRRFYERYRNS-QF--NPEKYIKYTPEDLENMLNEL 371 (371)
T ss_dssp ---S-HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-SS--SHCCC-SS-HHHHHHHHHTC
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc--CCCCCCccCHHHHHHHHHcC
Confidence 9999999999999999999999999999999986 55 99999999999999999986
No 3
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=98.79 E-value=4.2e-05 Score=87.70 Aligned_cols=369 Identities=15% Similarity=0.181 Sum_probs=195.6
Q ss_pred CCchHHHHHHHHhhHHHH-HHHHHhcCccccchh-----hhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 036615 166 GYLRECTQVYGSVRKSAI-DSSFKRLGVEKLSIG-----DIQRLEWDALETKIRRWIRAAKVCVRILFASEKRLCEQIFD 239 (600)
Q Consensus 166 g~~~ec~~~Y~~~R~~~l-~~sL~~L~~e~ls~~-----~v~k~~~~~le~ki~~wi~~~~~~vk~L~~~Er~L~~~Vf~ 239 (600)
.+.+.|++.|+..|+..| ++.+..|.....+.. ++..-+.--.=+-|=.|++. ..++|+.++..+|.
T Consensus 205 ~lf~~~l~~~~~~R~~~l~~~F~~aLt~g~~~~~~~rPIel~AhDP~RYvGDmLAwvHq-------~~a~E~E~l~~Lf~ 277 (618)
T PF06419_consen 205 VLFNYCLDEFAEARSKALLRRFLDALTRGGPGGSPSRPIELHAHDPLRYVGDMLAWVHQ-------AIASEREFLESLFK 277 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhhccChHHHHHHHHHHHHH-------HhhhHHHHHHHHhc
Confidence 357899999999998766 455556744322110 11110100011224467774 57899999999998
Q ss_pred CCCcch-----------------hhhHHHHHhhhHHHHHHHHHHHHHhhcCChh---HHHHHhhHHHHHHhhhHHHHHHh
Q 036615 240 GVGTAI-----------------DDACFMETVKGPAIQLFNFAEAISISRRSPE---KLFKILDLHDALVELMPDIEIVF 299 (600)
Q Consensus 240 ~~~~~~-----------------~~~~F~~i~~~~~~~Ll~f~~~va~~~rspe---klf~lLdmye~L~~l~p~~~~lf 299 (600)
..+... ...+...|..+-.-.|-.=.+.|-.+...|- +++.+|.-|...- ..++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~lld~i~~~l~rplk~RvEQvi~se~~~i~~yki~~LL~fY~~~~------~k~i 351 (618)
T PF06419_consen 278 FDEDEIAEGSSSGFDSNPWSEELINELLDRILEGLCRPLKIRVEQVISSEEDPITLYKIANLLSFYQMTF------SKLI 351 (618)
T ss_pred ccccccccccccccccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH------HHHc
Confidence 643211 1111111111111111112222222333333 6777777776643 3444
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCCCCCCCCCCcccccHHHHHHHHHHHHhhHHHHHHHHhcC
Q 036615 300 DSKSSDLIRVQAAEILSRLAEAARGI----LSEFENAVLKEPSKVPVPGGTIHPLTRYVMNYISLISDYKQTLIELIMSK 375 (600)
Q Consensus 300 ~~~~~~~vr~~~~~~l~~L~~~~~~~----~~ef~~~I~~~~sk~~~~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~ 375 (600)
+..+ .+ ...+..|.+.+.+. +......|.......|++|=...+-....++-|+ .||...
T Consensus 352 ~~~s--~L----~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~~~~~~~DL~PP~~l~d~l~~L~----------~il~~~ 415 (618)
T PF06419_consen 352 GEDS--SL----IETLKELQDLAQKKFFSSLRDHVAKLLRSAPEPPPADLSPPEWLIDFLSLLR----------EILDVY 415 (618)
T ss_pred CCCc--hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHH----------HHHHHh
Confidence 4332 23 34445555555544 4444445554422334445444443333333333 333322
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCcHHHHHHHHHHHHHHhHHhhhhcCccchhhhHHhhhhHHHHHHHhhCChhHHHHh
Q 036615 376 PSTGSRYSGDPSTPDMDFAELEGKTPLALHLIWVIVILQFNLDGKSKHYKDASLVHLFMMNNVHYIVQKVKSSPELREMI 455 (600)
Q Consensus 376 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~i~~ii~~L~~nLe~KSk~ykd~aL~~lFLmNN~~yI~~~v~~S~~L~~lL 455 (600)
..+ ..+. +...+...+...+..+|+-+....+.-|....++.-+.||++|.+.+|...+..- +.
T Consensus 416 ~~s--------~~~~---~~~~~~~~~~~Il~~~idpll~~c~~~a~~L~~~~~~~if~iNCl~~i~s~L~~~-~~---- 479 (618)
T PF06419_consen 416 DSS--------LSPD---DDRENDNDFKPILDEPIDPLLQMCQKSASPLAPKDDRAIFMINCLDLIQSTLSPF-EF---- 479 (618)
T ss_pred hcc--------cCCc---cchhhhhHHHHHHHHHhHHHHHHHHHHhhccCChhhhHHHHHHhHHHHHHHccCh-Hh----
Confidence 111 0000 0011114577777888888888888888877766668999999999999998763 21
Q ss_pred hhhHHHHHHHHHHHHHHHHH---------HHhHHHHHHhhc----ccCCccCCCCCCccchHHHHHHHHHHHHHHHHH-H
Q 036615 456 GDDYLRKMTGKFRQAATNYQ---------RATWVKVLYCLR----DEGLHVSGGFSSGVSKSALRERFKSFNAMFEEV-H 521 (600)
Q Consensus 456 G~~w~~~~~~~v~~~~~~Y~---------~~sW~~vl~~L~----d~~~~~sg~~~~~~~r~~iKekfk~FN~~FEE~-~ 521 (600)
..+++.++..+++.+...-. +..=+.+...+. +.+...+=......+.+.++.-..+|+.-+--+ .
T Consensus 480 ~~~~~e~L~~~id~~~~~Lv~~Q~~~lL~~sGL~~~~~~l~~i~~~~~~~~pls~~p~~~~~~l~~a~~kld~fL~sa~~ 559 (618)
T PF06419_consen 480 TSERVEELQDQIDAHVDTLVEEQASFLLERSGLGDLYNALNMIFFDYDMYGPLSENPGMDPDSLSNALQKLDDFLPSALT 559 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHhhccCCcccCCcccCccCCHHHHHHHHHHHHHHHcccch
Confidence 12444555444444333322 223334444554 211000000122345555555555555444322 1
Q ss_pred HHccc-cccCChHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccCHHHHHHHH
Q 036615 522 RTQAT-WLIPDSQLREELRISISEKLIPAYRSFLGRFRSHIESSKHPENYIKYSVEDLETSV 582 (600)
Q Consensus 522 ~~Q~~-w~VpD~~LRe~Lr~~i~~~ViPaY~~F~~ky~~~~~~~k~~~KYiKYtpedle~~L 582 (600)
-.|.. -.+.+|.+|+.++......++-+|..||+...+.. . .-+.-...||++|..+|
T Consensus 560 d~~~~L~~L~Sp~l~~~I~~~a~~~f~~~Y~~v~~~v~d~~-n--~y~sl~~~tpeeI~~LL 618 (618)
T PF06419_consen 560 DAQPNLFKLQSPKLRDDIRERAFERFCKAYEKVYEAVMDPD-N--GYESLFPRTPEEIRTLL 618 (618)
T ss_pred hhhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-c--ccccccCCCHHHHhhcC
Confidence 22333 44789999999999999999999999999976521 1 11134789999998764
No 4
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.24 Score=55.38 Aligned_cols=383 Identities=16% Similarity=0.198 Sum_probs=184.4
Q ss_pred hhHHHHHHHHHHHHHHcC-CchHHHHHHHHhhHH-HHHHHHHhc--Cccc-------cchhhhhhcchHHHHHHHHHHHH
Q 036615 149 EETIEDLKNIAERMIAAG-YLRECTQVYGSVRKS-AIDSSFKRL--GVEK-------LSIGDIQRLEWDALETKIRRWIR 217 (600)
Q Consensus 149 ~~~v~~L~~Ia~~m~~~g-~~~ec~~~Y~~~R~~-~l~~sL~~L--~~e~-------ls~~~v~k~~~~~le~ki~~wi~ 217 (600)
+++-+-|++-..++...- .-+.|++-|+..|+. .+.+.+..| |... ++..+..+- =+-+=.|++
T Consensus 221 ~E~~~il~kA~~~L~~~p~lfk~~ide~~~aR~~~L~~~Fisaltrg~~~~~PrpIel~ahDPlRy-----IGDmLawlH 295 (655)
T KOG3758|consen 221 QEVSPILRKAFVFLSSRPVLFKYLIDEVGTARSQSLLRQFISALTRGGPGGMPRPIELHAHDPLRY-----IGDMLAWLH 295 (655)
T ss_pred hhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCccccCCChHHH-----HHHHHHHHH
Confidence 455566666666654432 357899999999985 457777888 3211 111111111 122446777
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCcchh-----hhHHHHHhhhHHHHHHH-HHHHH-----------HhhcCChh---H
Q 036615 218 AAKVCVRILFASEKRLCEQIFDGVGTAID-----DACFMETVKGPAIQLFN-FAEAI-----------SISRRSPE---K 277 (600)
Q Consensus 218 ~~~~~vk~L~~~Er~L~~~Vf~~~~~~~~-----~~~F~~i~~~~~~~Ll~-f~~~v-----------a~~~rspe---k 277 (600)
. ..++|+.|...+|.......+ ..-...+..+....||. ..+.| -..-+++- +
T Consensus 296 q-------~ia~Ekelv~aLfd~~~~d~q~n~~~~en~~~vl~~~dn~lld~i~~gvcrPlkvRvEqil~~e~~~Iilfk 368 (655)
T KOG3758|consen 296 Q-------AIANEKELVEALFDFKKEDLQDNISISENLPNVLGGIDNKLLDDILEGVCRPLKVRVEQILQAEKNAIILFK 368 (655)
T ss_pred H-------HhhhHHHHHHHHhcchhhhhccCCCchhHhHHHHhchhhhHHHHHHHHhcchhHHHHHHHHHcCcCceeehh
Confidence 4 567899999988832100000 00111222222222322 11222 22333443 4
Q ss_pred HHHHhhHHHHHHhhhHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCC-CCCCC-CCcccc-cHHH
Q 036615 278 LFKILDLHDALVELMPDIEIVFDSKSSDLIRVQAAEILSRLAEAARGILSEFEN-AVLKEPS-KVPVP-GGTIHP-LTRY 353 (600)
Q Consensus 278 lf~lLdmye~L~~l~p~~~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~~~ef~~-~I~~~~s-k~~~~-dG~VH~-lT~~ 353 (600)
+..+|.-|.. .|..+..+++ .+...++.|.+.++.+|....+ .+.+-.. ..+++ |=...| ++.+
T Consensus 369 i~nlL~FY~~------~fs~~v~~ds------~l~~~l~~L~d~s~q~~~~~l~~~~~~l~~~~l~p~~DLlPpp~v~~~ 436 (655)
T KOG3758|consen 369 ISNLLKFYRV------TFSKLVQDDS------ALLNTLKELEDISKQRFIGYLEDHVKKLMRKELSPPSDLLPPPAVREY 436 (655)
T ss_pred HHHHHHHHHH------HHHHHhcccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHH
Confidence 4445554433 2344444432 2356677777777776555443 2221111 12333 533334 4455
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCccccccCCCcHHHHHHHHHHHHHHhHHhhhhcCccchhhhHH
Q 036615 354 VMNYISLISDYKQTLIELIMSKPSTGSRYSGDPSTPDMDFAELEGKTPLALHLIWVIVILQFNLDGKSKHYKDASLVHLF 433 (600)
Q Consensus 354 vmnyl~~L~~y~~~L~~iL~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~i~~ii~~L~~nLe~KSk~ykd~aL~~lF 433 (600)
++++...+.-|..++.... +. ..+....++..+--||..-...-+++-. -+|.+- -+|
T Consensus 437 l~ll~ei~~~~~a~~~~~d-----------~~---------~~df~~l~s~vldpilq~c~~sae~~lp-~~d~~~-~if 494 (655)
T KOG3758|consen 437 LNLLVEIFEIYEASHTAED-----------GE---------QLDFKLLLSCVLDPILQMCQKSAEAHLP-TSDKGS-LIF 494 (655)
T ss_pred HHHHHHHHHHhhhhhcccc-----------cc---------ccchHHHHHHHHHHHHHHHHHHHHhcCC-Cccccc-cee
Confidence 5555555554544332210 00 0112123333333344444443333322 122221 599
Q ss_pred hhhhHHHHHHHhhCChhHHHHhhhhHHHHHHHHHHHHHHHHHH---------HhHHHHHHhhcccCCccC-CCCCCccch
Q 036615 434 MMNNVHYIVQKVKSSPELREMIGDDYLRKMTGKFRQAATNYQR---------ATWVKVLYCLRDEGLHVS-GGFSSGVSK 503 (600)
Q Consensus 434 LmNN~~yI~~~v~~S~~L~~lLG~~w~~~~~~~v~~~~~~Y~~---------~sW~~vl~~L~d~~~~~s-g~~~~~~~r 503 (600)
|+|-++.|...+.+-.-+ +.-.+....+++.|...-.. ..-+...+.+...+..-+ -....+.+-
T Consensus 495 ~iNcL~~iks~l~~~e~~-----~~~~e~lq~~ie~~~d~L~t~q~s~ll~~~GLs~~~q~~~~~~p~~~~ls~~~~l~s 569 (655)
T KOG3758|consen 495 MINCLDLIKSRLARYEFL-----DERVEMLQAKIEAYLDTLVTLQVSFLLENTGLSDLYQKFNMITPEDSVLSLDPDLES 569 (655)
T ss_pred hhhhHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHhcCcchhhhhccccccH
Confidence 999999998887653111 12223333344433333221 222222222221110000 001122233
Q ss_pred HHHHHH---HHHHHHHHHHHHHHccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC-CcccccCHHHHH
Q 036615 504 SALRER---FKSFNAMFEEVHRTQATWLIPDSQLREELRISISEKLIPAYRSFLGRFRSHIESSKHP-ENYIKYSVEDLE 579 (600)
Q Consensus 504 ~~iKek---fk~FN~~FEE~~~~Q~~w~VpD~~LRe~Lr~~i~~~ViPaY~~F~~ky~~~~~~~k~~-~KYiKYtpedle 579 (600)
..+++. |..|+.+=...+=-|-. .+.-|.+|++++......++-+|..+|++-.+....-+.| +--++++||++.
T Consensus 570 ~~~~~~i~~fd~~l~~~~~~~lpq~q-~l~sp~~r~~i~kr~~~~~~~aY~~i~~al~~~~ngy~dPve~ll~~~~dq~~ 648 (655)
T KOG3758|consen 570 ALLDEAIVKFDMFLHAPLNLTLPQLQ-QLTSPMVRDEICKRSAKKFVLAYEIIYKALINPYNGYKDPVESLLHFSPDQVD 648 (655)
T ss_pred HHHHHHHHHHHHHhcccccccchHHH-HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCChHHHHhcCCHHHhc
Confidence 334443 44443221111111111 3457899999999999999999999999988754445667 667889999887
Q ss_pred HHHH
Q 036615 580 TSVL 583 (600)
Q Consensus 580 ~~L~ 583 (600)
..++
T Consensus 649 tll~ 652 (655)
T KOG3758|consen 649 TLLG 652 (655)
T ss_pred cccc
Confidence 6653
No 5
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.31 E-value=0.045 Score=61.59 Aligned_cols=185 Identities=17% Similarity=0.182 Sum_probs=109.4
Q ss_pred HHHHHHHHhhhcCCCCcchhhhHHHHHhhhHHHHHHHHHHHHHhhcCChhHHHHHhhHHHHHHhhhHHHHHHhccCChhH
Q 036615 227 FASEKRLCEQIFDGVGTAIDDACFMETVKGPAIQLFNFAEAISISRRSPEKLFKILDLHDALVELMPDIEIVFDSKSSDL 306 (600)
Q Consensus 227 ~~~Er~L~~~Vf~~~~~~~~~~~F~~i~~~~~~~Ll~f~~~va~~~rspeklf~lLdmye~L~~l~p~~~~lf~~~~~~~ 306 (600)
..+|+..|...|...+. ..+.+|.+|-.+++..+..|.+.......++--++.++.+-..... ......+..
T Consensus 300 ~t~Ey~F~~~FF~~~~~-~~~~if~~If~~t~~~~~~~~~~~l~~~~D~iglll~Irl~~~~~~-------~~~~R~ip~ 371 (508)
T PF04129_consen 300 ATSEYLFISEFFSGSGD-AAEDIFNQIFEPTFSLLQEFTEQLLSNSYDAIGLLLCIRLNQRYQF-------EMQRRRIPV 371 (508)
T ss_pred hhHHHHHHHHHHccccc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-------HHHhCCCCc
Confidence 45899999999998442 5677899998888888888887643332344344444433333322 111122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCcccccHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCC
Q 036615 307 IRVQAAEILSRLAEAARGILSEFENAVLKEPSK-VPVPGGTIHPLTRYVMNYISLISDYKQTLIELIMSKPSTGSRYSGD 385 (600)
Q Consensus 307 vr~~~~~~l~~L~~~~~~~~~ef~~~I~~~~sk-~~~~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~~~~~~~~~~~ 385 (600)
+-.-+..+...|=-....++..=.++|++-..+ ....+.+.|++|+.--.|+..| ..+-... +
T Consensus 372 ld~y~~~~~~~LWprF~~i~d~nieSlk~~~~~~~~~~~~~PH~itrRyaef~~sl-------l~L~~~~--------~- 435 (508)
T PF04129_consen 372 LDSYLNSLLMLLWPRFQKIMDANIESLKKADPKKLGSIDTRPHYITRRYAEFLSSL-------LKLSSEH--------P- 435 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCccCChHHHHHHHHHHHHH-------HHHhccC--------c-
Confidence 323344444444444455555555666654333 3336888899888655554443 2331111 0
Q ss_pred CCCCCCccccccCCCcHHHHHHHHHHHHHHhHHhhhhcCccchhhhHHhhhhHHHHHHHhhCC
Q 036615 386 PSTPDMDFAELEGKTPLALHLIWVIVILQFNLDGKSKHYKDASLVHLFMMNNVHYIVQKVKSS 448 (600)
Q Consensus 386 ~~~p~~~~~~~~~~~~l~~~i~~ii~~L~~nLe~KSk~ykd~aL~~lFLmNN~~yI~~~v~~S 448 (600)
...+...+..+-..+..-|..-|+..+++..+.+||.||+.+|+..+...
T Consensus 436 -------------~~~~~~~l~~L~~~~~~ll~~~s~~~~~~k~~~iFLiNNY~lIl~iL~~~ 485 (508)
T PF04129_consen 436 -------------DEQLEPSLNRLRREVEDLLTRLSKEFKDRKEREIFLINNYDLILSILSER 485 (508)
T ss_pred -------------hhhHHHHHHHHHHHHHHHHHHHHHhcccccccceehHHHHHHHHHHHHhc
Confidence 01244445555555555555557778888889999999999999999864
No 6
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.63 E-value=1.2 Score=49.68 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=49.6
Q ss_pred CCCcccccHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCccccccCCCcHHHHHHHHHHHHHHhHHhhhh
Q 036615 343 PGGTIHPLTRYVMNYISLISDYKQTLIELIMSKPSTGSRYSGDPSTPDMDFAELEGKTPLALHLIWVIVILQFNLDGKSK 422 (600)
Q Consensus 343 ~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~i~~ii~~L~~nLe~KSk 422 (600)
++.+.|++|+-.-.|+..+. .+=...+. + -.+...+..+....++-+..-+|
T Consensus 474 ~d~rPHyitrRyAEf~ss~~-------~l~v~~~~--------------------~-~~~~~ll~~l~~~ve~fl~rmak 525 (683)
T KOG1961|consen 474 LDTRPHYITRRYAEFLSSFL-------MLNVTYGN--------------------E-QDVERLLERLQMEVESFLLRMAK 525 (683)
T ss_pred cCCCchHHHHHHHHHHHHHH-------HHHHhccc--------------------c-chHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999987655554432 22111110 0 11333344455555555666688
Q ss_pred cCccchhhhHHhhhhHHHHHHHhhC
Q 036615 423 HYKDASLVHLFMMNNVHYIVQKVKS 447 (600)
Q Consensus 423 ~ykd~aL~~lFLmNN~~yI~~~v~~ 447 (600)
.++++--+.+||.||+.+|..-+..
T Consensus 526 ~~~~~K~q~vFLiNNYdlil~vL~e 550 (683)
T KOG1961|consen 526 LFPTRKQQLVFLINNYDLILGVLME 550 (683)
T ss_pred hcCCcccceeeeeccHHHHHHHHHh
Confidence 8888889999999999999977764
No 7
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=96.29 E-value=1.3 Score=52.00 Aligned_cols=220 Identities=13% Similarity=0.247 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hhc-CCCCCCCC-CCcccccHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 036615 311 AAEILSRLAEAARGILSEFENA-VLK-EPSKVPVP-GGTIHPLTRYVMNYISLISDYKQTLIELIMSKPSTGSRYSGDPS 387 (600)
Q Consensus 311 ~~~~l~~L~~~~~~~~~ef~~~-I~~-~~sk~~~~-dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~~~~~~~~~~~~~ 387 (600)
+..++.++...+++.|..|.+. |+. ..++.... -.|| +-|++.+..|-..++.++......
T Consensus 439 l~~~L~~l~~~~k~~f~~fv~~Qi~~ie~~k~~~k~r~GV-------l~~i~~fp~f~~~~E~~~~~~~~~--------- 502 (701)
T PF09763_consen 439 LSNLLQKLQVRLKRLFDKFVDEQIKSIEETKVSKKKRKGV-------LPFIKKFPEFVKRVESMFSGAERA--------- 502 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcc-------chHHHHHHHHHHHHHHHHcccccc---------
Confidence 4677888888888888888762 222 11232222 2244 556666677777777777542210
Q ss_pred CCCCccccccCCCcHHHHHHHHHHHHHHhHHhhhhcCc-----------cchhhhHHhhhhHHHHHHHhhCChhHHHHhh
Q 036615 388 TPDMDFAELEGKTPLALHLIWVIVILQFNLDGKSKHYK-----------DASLVHLFMMNNVHYIVQKVKSSPELREMIG 456 (600)
Q Consensus 388 ~p~~~~~~~~~~~~l~~~i~~ii~~L~~nLe~KSk~yk-----------d~aL~~lFLmNN~~yI~~~v~~S~~L~~lLG 456 (600)
......+...+..++.++...|+..++.-+ ...-.+|.++=|+||+...+..- .....|
T Consensus 503 --------~~~r~~vd~aY~kl~~a~~~~l~~~a~~~~~~~~~~~~~dk~~~~~~v~~leN~~~~~e~l~~~-~~~~~l- 572 (701)
T PF09763_consen 503 --------REDRSLVDKAYEKLVRAMFDSLERIAKLSPKNSGSQDPEDKEKLNYHVVLLENYHHFYEELSQL-KINSVL- 572 (701)
T ss_pred --------chHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCccccccchhhHHHHHHHHHHHHHHhhc-cchhhH-
Confidence 012245778889999999999999997433 24568999999999999999753 332223
Q ss_pred hhHHHHHHHHHHHHHHHHHH----HhHHHHHHhhccc-CC-c-cC-C--CCCCccchHHHHHHHHH-----HHHHHHHHH
Q 036615 457 DDYLRKMTGKFRQAATNYQR----ATWVKVLYCLRDE-GL-H-VS-G--GFSSGVSKSALRERFKS-----FNAMFEEVH 521 (600)
Q Consensus 457 ~~w~~~~~~~v~~~~~~Y~~----~sW~~vl~~L~d~-~~-~-~s-g--~~~~~~~r~~iKekfk~-----FN~~FEE~~ 521 (600)
+.|.++-....+++...|.. ..+++++.+.... .+ . ++ . +.-..-+|+.+|.-++. .-...+.+|
T Consensus 573 ~~~~~~A~~~~~~~~~~Y~~~~l~r~~~kL~~F~~gve~l~~~~~~~ei~~~~~ySk~~l~kvl~~y~~kev~k~i~~l~ 652 (701)
T PF09763_consen 573 EEFRKEAKQIYDEHLEAYVTFLLRRPFGKLLDFFEGVEALLQTVSPEEISYQAAYSKQELKKVLKSYPSKEVRKGIEALY 652 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccCchhcccchhccHHHHHHHHHhCChHHHHHHHHHHH
Confidence 45666666666666666554 4555665555321 00 0 00 0 11233457777766665 456788888
Q ss_pred HH-cccc--c----cCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 036615 522 RT-QATW--L----IPDSQLREELRISISEKLIPAYRSFLGR 556 (600)
Q Consensus 522 ~~-Q~~w--~----VpD~~LRe~Lr~~i~~~ViPaY~~F~~k 556 (600)
++ ++.+ . ..+..|-+.+=+++.+..+-.|.+|++-
T Consensus 653 krveKHf~~~~~~~~~~~~Ll~~vW~~~q~~~i~~~~~l~~l 694 (701)
T PF09763_consen 653 KRVEKHFSRDADDPSFEEDLLQVVWSAMQEEFIRQYERLETL 694 (701)
T ss_pred HHHHHHcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 3444 1 2356666666666666666666665543
No 8
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=87.32 E-value=39 Score=40.22 Aligned_cols=134 Identities=18% Similarity=0.293 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHcCCchHHHHHHHHhhHHHHHHHHHhcCccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 036615 150 ETIEDLKNIAERMIAAGYLRECTQVYGSVRKSAIDSSFKRLGVEKLSIGDIQRLEWDALETKIRRWIRAAKVCVRILFAS 229 (600)
Q Consensus 150 ~~v~~L~~Ia~~m~~~g~~~ec~~~Y~~~R~~~l~~sL~~L~~e~ls~~~v~k~~~~~le~ki~~wi~~~~~~vk~L~~~ 229 (600)
.-+...+...+.+..-|...++.+.|..+|+..|.+.=....... .......|+..+--.+-.++..
T Consensus 198 ~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~-------------~~~~~~~~L~~fyd~ll~~l~~ 264 (766)
T PF10191_consen 198 RDVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQSD-------------QSQSFAEWLPSFYDELLSLLHQ 264 (766)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------cchhHHHHHHHHHHHHHHHHHH
Confidence 344555556666667788889999999999876654222221110 0023567888887777779999
Q ss_pred HHHHHhhhcCCCCcchhhhHHHHHhhhHHHHHHH-HHHHHHh-hcCC-hh-HHHHHhhHHHHHHhhhHHHHHHhcc
Q 036615 230 EKRLCEQIFDGVGTAIDDACFMETVKGPAIQLFN-FAEAISI-SRRS-PE-KLFKILDLHDALVELMPDIEIVFDS 301 (600)
Q Consensus 230 Er~L~~~Vf~~~~~~~~~~~F~~i~~~~~~~Ll~-f~~~va~-~~rs-pe-klf~lLdmye~L~~l~p~~~~lf~~ 301 (600)
|.+-|.+||+.... +...+....+..|-. |...|.. .++. |. ++..++++|.+-....-.++.+|..
T Consensus 265 E~~w~~~vF~~~~~-----~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~ 335 (766)
T PF10191_consen 265 ELKWCSQVFPDESP-----VLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSS 335 (766)
T ss_pred HHHHHHHHcCCchh-----HHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998321 222222222222221 3333422 2222 33 5889999999988888888888875
No 9
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.26 E-value=41 Score=38.57 Aligned_cols=216 Identities=16% Similarity=0.209 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCC-CCCcccccHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 036615 311 AAEILSRLAEAARGILSEFENAVLKEPS--KVPV-PGGTIHPLTRYVMNYISLISDYKQTLIELIMSKPSTGSRYSGDPS 387 (600)
Q Consensus 311 ~~~~l~~L~~~~~~~~~ef~~~I~~~~s--k~~~-~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~~~~~~~~~~~~~ 387 (600)
+.-.+..|.-.+++-|..|...-...-. +... .-+||-| |+-....|....+.|+.+.
T Consensus 605 ls~tlgsllv~VkrqFdrfiq~qc~qieevki~kksk~gILP-------yv~rFenfa~raE~if~na------------ 665 (867)
T KOG2148|consen 605 LSLTLGSLLVRVKRQFDRFIQNQCSQIEEVKIAKKSKIGILP-------YVFRFENFARRAEIIFENA------------ 665 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-------cHHHHHHHHHHHHHHHhhh------------
Confidence 3455666666777778888653322211 1111 2345544 6667777778888888642
Q ss_pred CCCCccccccCCCcHHHHHHHHHHHHHHhHHhhhhcCccchhhhHHhhhhHHHHHHHhhCChhHHHHhhhhHHHHHHHHH
Q 036615 388 TPDMDFAELEGKTPLALHLIWVIVILQFNLDGKSKHYKDASLVHLFMMNNVHYIVQKVKSSPELREMIGDDYLRKMTGKF 467 (600)
Q Consensus 388 ~p~~~~~~~~~~~~l~~~i~~ii~~L~~nLe~KSk~ykd~aL~~lFLmNN~~yI~~~v~~S~~L~~lLG~~w~~~~~~~v 467 (600)
+.++.+-..+..++.+....++.-|..|.. +-+.+-+|-|+|++...+- +|+..--+.-...+....
T Consensus 666 ---------erRtdlekaYtklvravfvgiek~Aqq~pK-tp~dVv~mENyh~~y~tLs---~Lkis~lda~kkeaka~~ 732 (867)
T KOG2148|consen 666 ---------ERRTDLEKAYTKLVRAVFVGIEKIAQQDPK-TPADVVLMENYHHFYATLS---DLKISCLDAAKKEAKALY 732 (867)
T ss_pred ---------hhcchHHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHhhHHHHHHHHH---HHhccchhHHHHHHHHHH
Confidence 123567778889999999999998888764 3467889999999987774 454322233334455666
Q ss_pred HHHHHHHHHHhHHHHHHhhcc--cCCc--c-CCCCCCcc------chHHHHHHH----H-HHHHHHHHHHHHccccccCC
Q 036615 468 RQAATNYQRATWVKVLYCLRD--EGLH--V-SGGFSSGV------SKSALRERF----K-SFNAMFEEVHRTQATWLIPD 531 (600)
Q Consensus 468 ~~~~~~Y~~~sW~~vl~~L~d--~~~~--~-sg~~~~~~------~r~~iKekf----k-~FN~~FEE~~~~Q~~w~VpD 531 (600)
..+.+.|...+.|..+..|.. ++.. + .|-....+ +|..+|.-. . .--..+|.+|++=..--+..
T Consensus 733 ~dhl~ayV~~~~GrPLekln~Ffe~v~~~vaqGirpeeiSYQ~aFsk~elrkvi~qypgkEVkKglenlYKKveKnL~ae 812 (867)
T KOG2148|consen 733 ADHLAAYVKESMGRPLEKLNTFFEGVNNKVAQGIRPEEISYQLAFSKQELRKVIKQYPGKEVKKGLENLYKKVEKNLLAE 812 (867)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHhhHHHHhcCCChhhhhHHHHhhHHHHHHHHHHcchhhHHHHHHHHHHHHHHhhhhh
Confidence 788888988888888777742 2210 1 11000011 122222221 1 24567889998744444557
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036615 532 SQLREELRISISEKLIPAYRSFLGRFR 558 (600)
Q Consensus 532 ~~LRe~Lr~~i~~~ViPaY~~F~~ky~ 558 (600)
..|-..+=.+..+-.|--|..|-+.-.
T Consensus 813 enLLqvvW~~mqeeFi~qy~~f~~lIa 839 (867)
T KOG2148|consen 813 ENLLQVVWHKMQEEFIDQYESFEQLIA 839 (867)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888877644
No 10
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=62.26 E-value=1.7e+02 Score=33.17 Aligned_cols=90 Identities=20% Similarity=0.326 Sum_probs=51.1
Q ss_pred CChhHHHHHhhHHHHHHhhhHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccHH
Q 036615 273 RSPEKLFKILDLHDALVELMPDIEIVFDSKSSDLIRVQAAEILSRLAEAARGILSEFENAVLKEPSKVPVPGGTIHPLTR 352 (600)
Q Consensus 273 rspeklf~lLdmye~L~~l~p~~~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~~~ef~~~I~~~~sk~~~~dG~VH~lT~ 352 (600)
++++..|.+|++|..|. ..|.|...+. .....++..+.+-+..+-..|...-.......|+..-+.+|++.
T Consensus 326 ~s~~~~~~ll~~f~~L~-~Rp~I~~~l~--------~~~~~ll~~~~~ei~~~~~~f~~~~~~~~~~~~~~~~~~Ppvag 396 (579)
T PF08385_consen 326 SSPEEAFRLLQKFKSLL-NRPRIRKALQ--------EKYEQLLQQFKEEIDQLKKIFDNQKEKSETDNPPLPRNLPPVAG 396 (579)
T ss_pred CCHHHHHHHHHHHHhHh-cchHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCcHHHH
Confidence 67889999999999988 5676665443 44555666666555555555554332111122344555555444
Q ss_pred HHHHHHHHH----HhhHHHHHHHH
Q 036615 353 YVMNYISLI----SDYKQTLIELI 372 (600)
Q Consensus 353 ~vmnyl~~L----~~y~~~L~~iL 372 (600)
. +.+++.| ..+...+..++
T Consensus 397 ~-i~w~r~L~~ri~~~~~~~~~~~ 419 (579)
T PF08385_consen 397 A-IIWARQLERRIKEPMQRLKSLL 419 (579)
T ss_pred H-HHHHHHHHHHHhHHHHHHHHhc
Confidence 4 4444444 34555555554
No 11
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=53.79 E-value=3.9e+02 Score=31.54 Aligned_cols=105 Identities=15% Similarity=0.289 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhHHHHHHHHHhcC-ccccchhhhhhcchHHH----------HHHHHHHHHHHH
Q 036615 152 IEDLKNIAERMIAAGYLRECTQVYGSVRKSAIDSSFKRLG-VEKLSIGDIQRLEWDAL----------ETKIRRWIRAAK 220 (600)
Q Consensus 152 v~~L~~Ia~~m~~~g~~~ec~~~Y~~~R~~~l~~sL~~L~-~e~ls~~~v~k~~~~~l----------e~ki~~wi~~~~ 220 (600)
...++.+|..|..-+-+..|++.|...+.-+.+. ..++ .+.+..+. .|+.+ ......-..
T Consensus 128 ~~~M~~~A~vL~~fngg~~~i~~fi~k~~~f~~~--~~~~~~~~~~~~~----~~~~l~d~~~~~~~~~~~l~~~~~--- 198 (710)
T PF07393_consen 128 YERMKEFAKVLLEFNGGSSCIDFFINKHEFFIDE--DQLDESNGFEDEE----IWEKLSDPDSHPPINEESLDAFFE--- 198 (710)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHhChhhhhh--hhhccccccchhH----HHHhccCcccccccchHHHHHHHH---
Confidence 5778888888888777789999999877554421 1111 00000000 01111 111222222
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcc---hhhhHHHHHhhhHHHHHHHHHH
Q 036615 221 VCVRILFASEKRLCEQIFDGVGTA---IDDACFMETVKGPAIQLFNFAE 266 (600)
Q Consensus 221 ~~vk~L~~~Er~L~~~Vf~~~~~~---~~~~~F~~i~~~~~~~Ll~f~~ 266 (600)
-++..+..|.++.+.||+...+. +-..+|.+...+-+..+|.-+.
T Consensus 199 -~i~~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~~I~~~i~~lL~~a~ 246 (710)
T PF07393_consen 199 -DIRDVINEESKIIDRVFPNPEPVMQKFIERVFEQVIQEYIESLLEEAS 246 (710)
T ss_pred -HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 23457789999999999874321 2344555555555555555443
No 12
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=47.22 E-value=1.2e+02 Score=36.53 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHccccccC-ChHHHHHHHHHHHHHHHHHHHHHHH
Q 036615 503 KSALRERFKSFNAMFEEVHRTQATWLIP-DSQLREELRISISEKLIPAYRSFLG 555 (600)
Q Consensus 503 r~~iKekfk~FN~~FEE~~~~Q~~w~Vp-D~~LRe~Lr~~i~~~ViPaY~~F~~ 555 (600)
++.|-+.+|.=| |++++.+|-.-.+. ...|.+.+|.+....|||+|.+=..
T Consensus 1014 kenI~ql~KSkn--l~dtvar~i~~~~Qtsg~lQ~a~resm~SsviPafEKScq 1065 (1283)
T KOG1916|consen 1014 KENINQLLKSKN--LEDTVARQIQAQFQTSGPLQEALRESMESSVIPAFEKSCQ 1065 (1283)
T ss_pred HHHHHHHHhhcc--HHHHHHHHHHHHHhccchHHHHHHHHhhhhccHHHHHHHH
Confidence 455666666666 77777765444442 1229999999999999999986443
No 13
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=46.23 E-value=28 Score=39.14 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhcccc-CCCCCCCcccccCHHHHHHH
Q 036615 503 KSALRERFKSFNAMFEEVHRTQATWLIPDSQLREELRISISEKLIPAYRSFLGRFRSHI-ESSKHPENYIKYSVEDLETS 581 (600)
Q Consensus 503 r~~iKekfk~FN~~FEE~~~~Q~~w~VpD~~LRe~Lr~~i~~~ViPaY~~F~~ky~~~~-~~~k~~~KYiKYtpedle~~ 581 (600)
|-.+-.+.+.|++.|+|+.+.= .+....+..-.|+++|-.....+ ++-+.-.-|..++-..+|++
T Consensus 97 r~~l~s~~r~F~E~f~ell~~a--------------e~~l~~mF~~tYg~ly~qn~~~~~dlFtel~~y~~~~~~nlee~ 162 (563)
T KOG3821|consen 97 RFVLASNARKFDEFFLELLRNA--------------ENSLNAMFSKTYGSLYPQNAELFNDLFTELKLYYVGSNVNLEET 162 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 5566678899999999998752 34555678888888887765433 22223456888899999999
Q ss_pred HHHhhC
Q 036615 582 VLDFFE 587 (600)
Q Consensus 582 L~~LFe 587 (600)
|++||.
T Consensus 163 l~eff~ 168 (563)
T KOG3821|consen 163 LNEFFA 168 (563)
T ss_pred HHHHHH
Confidence 999985
No 14
>PHA01746 hypothetical protein
Probab=45.42 E-value=8.2 Score=33.93 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=21.9
Q ss_pred HHHccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccCHHH
Q 036615 521 HRTQATWLIPDSQLREELRISISEKLIPAYRSFLGRFRSHIESSKHPENYIKYSVED 577 (600)
Q Consensus 521 ~~~Q~~w~VpD~~LRe~Lr~~i~~~ViPaY~~F~~ky~~~~~~~k~~~KYiKYtped 577 (600)
|++|-+-.-.|..= +-+-..|++||.+.+ .|||||||.+
T Consensus 59 fkKQIGiTa~DAgd------------L~lIa~FLeKYS~~L------nkYVkFs~~n 97 (131)
T PHA01746 59 FRKQIGITPQDAGD------------LKLIAEFLEKYSDFL------NEYVKFTPRN 97 (131)
T ss_pred hhhhcCCCccchhh------------HHHHHHHHHHHHHHH------HHHeeeccCC
Confidence 55666666555421 122345777776543 5777777743
No 15
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=43.00 E-value=7.7 Score=34.75 Aligned_cols=21 Identities=29% Similarity=0.626 Sum_probs=17.7
Q ss_pred cccCCCCCCCcccccCHHHHH
Q 036615 559 SHIESSKHPENYIKYSVEDLE 579 (600)
Q Consensus 559 ~~~~~~k~~~KYiKYtpedle 579 (600)
...++-+||+||.|||-+++.
T Consensus 53 ~vPDYv~nP~KwTkYSL~dv~ 73 (115)
T PF15264_consen 53 GVPDYVRNPEKWTKYSLDDVS 73 (115)
T ss_pred CCCCCcCCcccceeeecCCCc
Confidence 334788999999999999984
No 16
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=39.31 E-value=2.2e+02 Score=29.86 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=26.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 036615 452 REMIGDDYLRKMTGKFRQAATNYQRATWVKVLYCLRD 488 (600)
Q Consensus 452 ~~lLG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~d 488 (600)
..-++++.+..+...+++|..-|+ +.+.+++-|.+
T Consensus 114 I~~Ik~dYldvYa~lvk~YTd~yQ--~fn~~lSkls~ 148 (308)
T TIGR02553 114 IGKIGDSYLGVYENVVEGYTDFYQ--AFSDILSKMQD 148 (308)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHhh
Confidence 344566788888888999998886 57788888844
No 17
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.04 E-value=6.4e+02 Score=30.49 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=23.9
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036615 293 PDIEIVFDSKSSDLIRVQAAEILSRLAEAARGILSEFEN 331 (600)
Q Consensus 293 p~~~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~~~ef~~ 331 (600)
|.+..+|.|--.++...+....+++|-++|+.-|.-..+
T Consensus 549 ~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~py~d 587 (982)
T KOG2022|consen 549 PSLPLLFQGLHNSKESEQAISTLKTLCETCPESLDPYAD 587 (982)
T ss_pred chHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCchHHH
Confidence 455666766544445556666688888888776544333
No 18
>COG2733 Predicted membrane protein [Function unknown]
Probab=26.76 E-value=5e+02 Score=28.37 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=60.4
Q ss_pred HHHHHHHHHhHHHHHHhhcccCCccCCCCCCccchHHHHH-HHHHHHHHHHHHHHHccccccCChHHHHHHHHHHH---H
Q 036615 469 QAATNYQRATWVKVLYCLRDEGLHVSGGFSSGVSKSALRE-RFKSFNAMFEEVHRTQATWLIPDSQLREELRISIS---E 544 (600)
Q Consensus 469 ~~~~~Y~~~sW~~vl~~L~d~~~~~sg~~~~~~~r~~iKe-kfk~FN~~FEE~~~~Q~~w~VpD~~LRe~Lr~~i~---~ 544 (600)
.....|....|+....++..+--. +-..++. .++.|+.-++++ +.|++||..|..-+. +
T Consensus 289 ~~i~~~~~~~w~~~~~~l~~D~e~---------~~s~l~~~l~~~~~~~Ge~l--------~~D~~lr~kln~~~~~aa~ 351 (415)
T COG2733 289 EAIATAAGDMWTSLSEWLKEDYES---------EDSMLRKRLARAVQSVGEEL--------IADDALRAKLNEHLVQAAE 351 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccC---------chhHHHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHH
Confidence 356678889999998888654210 1112333 467777777776 359999999987654 4
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCcccccCHHHHHHHHHH
Q 036615 545 KLIPAYRSFLGRFRSHIESSKHPENYIKYSVEDLETSVLD 584 (600)
Q Consensus 545 ~ViPaY~~F~~ky~~~~~~~k~~~KYiKYtpedle~~L~~ 584 (600)
.+++-|..++.++-. ++ -=+|+.+++.++|..
T Consensus 352 ~l~e~~~~~it~~I~--dT------v~~wD~~elsr~iel 383 (415)
T COG2733 352 RLAEEKHAEITKHIS--DT------VKRWDAEELSRQIEL 383 (415)
T ss_pred HHHHHHhHHHHHHHH--HH------HhhcCHHHHHHHHHH
Confidence 566777777777643 22 126899999888754
No 19
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=24.45 E-value=7.7e+02 Score=27.85 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=44.3
Q ss_pred CccchhhhHHhhhhHHHHHHHhhCChhHHHHhhhhHH------HHHHHHHHHHHHHHHHHhHHHHHHhhcccCCccCCCC
Q 036615 424 YKDASLVHLFMMNNVHYIVQKVKSSPELREMIGDDYL------RKMTGKFRQAATNYQRATWVKVLYCLRDEGLHVSGGF 497 (600)
Q Consensus 424 ykd~aL~~lFLmNN~~yI~~~v~~S~~L~~lLG~~w~------~~~~~~v~~~~~~Y~~~sW~~vl~~L~d~~~~~sg~~ 497 (600)
.||+.-.+-.+--=..||+...-.|++|+.=+|.-.. ..+.+.+-| ...-..+||..+-++-+.+-
T Consensus 506 VKDtV~KqsLlhHlc~~vVE~FpessDLYSEiGA~tRSAkVDf~qL~DNL~q-lErrCKaSWe~L~~Iakhe~------- 577 (817)
T KOG1925|consen 506 VKDTVRKQSLLHHLCSLVVETFPESSDLYSEIGALTRSAKVDFEQLTDNLGQ-LERRCKASWESLRSIAKHEL------- 577 (817)
T ss_pred hcchHHHHHHHHHHHHHHHHhCCcchhHHHHhHhhhhhhhccHHHHHHHHHH-HHHHhhHHHHHHHHHHhhhc-------
Confidence 4555555555555577888887776688888874211 111111111 11223578987766544321
Q ss_pred CCccchHHHHHHHHHHHHH
Q 036615 498 SSGVSKSALRERFKSFNAM 516 (600)
Q Consensus 498 ~~~~~r~~iKekfk~FN~~ 516 (600)
+..+|.|+..|-..
T Consensus 578 -----~p~l~~r~~~fl~~ 591 (817)
T KOG1925|consen 578 -----APALRARLTHFLDQ 591 (817)
T ss_pred -----cHHHHHHHHHHHHH
Confidence 44678888877543
No 20
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=23.06 E-value=61 Score=37.37 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHH-c---cccc-----------------cCChHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC-
Q 036615 509 RFKSFNAMFEEVHRT-Q---ATWL-----------------IPDSQLREELRISISEKLIPAYRSFLGRFRSHIESSKH- 566 (600)
Q Consensus 509 kfk~FN~~FEE~~~~-Q---~~w~-----------------VpD~~LRe~Lr~~i~~~ViPaY~~F~~ky~~~~~~~k~- 566 (600)
-|..||..||..... | +-|. +.|..|| .|=..--..|-|.|-+|.+.++- .++.-+
T Consensus 83 ~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALr-aLpvtqH~rIW~lyl~Fv~~~~l-Pets~rv 160 (835)
T KOG2047|consen 83 AYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALR-ALPVTQHDRIWDLYLKFVESHGL-PETSIRV 160 (835)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHH-hCchHhhccchHHHHHHHHhCCC-hHHHHHH
Confidence 378888888876551 1 1221 1233333 22233345788999999999763 223222
Q ss_pred CCcccccCHHHHHHHHHHh
Q 036615 567 PENYIKYSVEDLETSVLDF 585 (600)
Q Consensus 567 ~~KYiKYtpedle~~L~~L 585 (600)
-..|+|+.|++.|++|.-|
T Consensus 161 yrRYLk~~P~~~eeyie~L 179 (835)
T KOG2047|consen 161 YRRYLKVAPEAREEYIEYL 179 (835)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 2689999999999998766
No 21
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.28 E-value=3.2e+02 Score=31.59 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=16.5
Q ss_pred hHHhhhhHH-HHHHHhhCChhHH
Q 036615 431 HLFMMNNVH-YIVQKVKSSPELR 452 (600)
Q Consensus 431 ~lFLmNN~~-yI~~~v~~S~~L~ 452 (600)
-||+.||+| ||...+-.|+++.
T Consensus 968 LiffiNnLHahIMeailhStgle 990 (1121)
T KOG4344|consen 968 LIFFINNLHAHIMEAILHSTGLE 990 (1121)
T ss_pred HHHHHHHHHHHHHHHHHhhcchh
Confidence 489999986 7888887665553
No 22
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=21.98 E-value=1.6e+02 Score=33.76 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhcccc-CCCCCCCcccccCHHHHHHHH
Q 036615 504 SALRERFKSFNAMFEEVHRTQATWLIPDSQLREELRISISEKLIPAYRSFLGRFRSHI-ESSKHPENYIKYSVEDLETSV 582 (600)
Q Consensus 504 ~~iKekfk~FN~~FEE~~~~Q~~w~VpD~~LRe~Lr~~i~~~ViPaY~~F~~ky~~~~-~~~k~~~KYiKYtpedle~~L 582 (600)
..+..+.+.|.+.|+++.+. -.+....+..-.|+.+|......+ ++-..-..|+..+...|+.++
T Consensus 90 ~~l~~~~~~F~~~f~~ll~~--------------se~~~~~~F~~~Y~~ly~~~~~~~~~lf~~l~~y~~g~~~~l~~~l 155 (557)
T PF01153_consen 90 HLLSTRARKFDEFFRELLRQ--------------SENSLHSMFSRTYGSLYPQNRPIFQDLFTDLRRYYLGSNVNLEEAL 155 (557)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHTTHHHHCTHHHHHHHHHHHHHHHCCS-S-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHH
Confidence 34566778899999888664 223444555666666666554322 111123467777778999999
Q ss_pred HHhhC
Q 036615 583 LDFFE 587 (600)
Q Consensus 583 ~~LFe 587 (600)
+++|.
T Consensus 156 ~~Ff~ 160 (557)
T PF01153_consen 156 NEFFD 160 (557)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99885
Done!