Query 036615
Match_columns 600
No_of_seqs 205 out of 491
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 05:44:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 100.0 1.5E-98 5E-103 843.4 42.7 500 11-590 35-571 (571)
2 2b1e_A Exocyst complex compone 100.0 2.7E-86 9.2E-91 741.3 44.1 489 11-586 46-563 (564)
3 2d2s_A Exocyst complex compone 68.1 75 0.0026 30.7 13.3 99 152-270 91-189 (235)
4 2x5h_A ORF 131; viral protein; 47.0 4.3 0.00015 32.6 0.1 20 550-575 77-96 (97)
5 2p7n_A Pathogenicity island 1 23.7 4.5E+02 0.015 27.3 10.5 75 438-524 178-252 (407)
6 3nft_A Translocator protein BI 23.0 73 0.0025 31.7 4.4 44 545-589 142-191 (303)
7 2wvq_A Small S protein; prion- 20.7 3.4E+02 0.012 25.7 8.8 102 477-585 57-167 (225)
8 3swh_A MUNC13-1, protein UNC-1 20.3 3.6E+02 0.012 27.3 9.3 112 318-446 19-133 (341)
9 2ket_A Cathelicidin-6; antimic 18.6 63 0.0022 19.6 1.8 17 509-525 2-18 (27)
10 3pf6_A Hypothetical protein PP 18.2 1E+02 0.0034 22.6 3.1 27 342-375 33-59 (62)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=100.00 E-value=1.5e-98 Score=843.41 Aligned_cols=500 Identities=24% Similarity=0.387 Sum_probs=421.1
Q ss_pred ccHHHHHHHHHhhcCCchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCCCCCCCCCCC
Q 036615 11 GSFESAEKIILRWDSTASEEAREKMIFEVKVNFAIQIAMARLEDEFRNILLAHIHAFDVDSLATDPSSSSCSRTESGGDH 90 (600)
Q Consensus 11 ~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~~am~~Le~EF~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (600)
++|..|.+.+..+++.++. + .|+++|+++||.+||+||++||.+|+.|++|+.++++++.. .
T Consensus 35 ~~l~~a~~~~~~~~~~s~~------l--~~~~~Ll~~a~~~Le~eF~~lL~~~~~~~~p~~ll~~~~~~----------~ 96 (571)
T 2pft_A 35 AKIQKAVEYFQDNSPDSPE------L--NKVKLLFERGKESLESEFRSLMTRHSKVVSPVLLLDLISAD----------D 96 (571)
T ss_dssp HHHHHHHHHHHHHSTTCHH------H--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHT----------C
T ss_pred HHHHHHHHHHHhcCCChHH------H--HHHHHHHHHHHHHHHHHHHHHHHhcCcCCChHHHHhccccc----------c
Confidence 5677777777777765532 2 48899999999999999999999999999999876543210 0
Q ss_pred CCCChhHHhhhcccccccccCCCCCcccccccccccCCCccccccCCCccccccCCCChhHHHHHHHHHHHHHHcCCchH
Q 036615 91 FDDDDEDRQQLGQEQEKDHLDSTTSSTTYDVLKHSESNTSVSSSYRSTSCIREIELIPEETIEDLKNIAERMIAAGYLRE 170 (600)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~L~~Ia~~m~~~g~~~e 170 (600)
+.. .+ + ...++.+||+++.+|+.||+||+.+||.++
T Consensus 97 -~~~-~~-------------~-----------------------------~~~~~~~~~~~~~~L~~Ia~~m~~~g~~~~ 132 (571)
T 2pft_A 97 -ELE-VQ-------------E-----------------------------DVVLEHLPESVLRDVVRISRWLVEYGRNQD 132 (571)
T ss_dssp -CCC---------------------------------------------------SSCHHHHHHHHHHHHHHHHHCSCCH
T ss_pred -ccC-cc-------------c-----------------------------cccccCCCHHHHHHHHHHHHHHHHcCCchH
Confidence 000 00 0 012468999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHhc------------------------CccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHH
Q 036615 171 CTQVYGSVRKSAIDSSFKRL------------------------GVEKLSIGDIQRLEWDALETKIRRWIRAAKVCVRIL 226 (600)
Q Consensus 171 c~~~Y~~~R~~~l~~sL~~L------------------------~~e~ls~~~v~k~~~~~le~ki~~wi~~~~~~vk~L 226 (600)
|+++|+++|+++|+++|..| |.++.+..++++ +|+.++.+|.+|++++.++++ |
T Consensus 133 ~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~i~~wi~~~~~~~~-l 210 (571)
T 2pft_A 133 FMNVYYQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPG-RDDMLDVETDAYIHCVSAFVK-L 210 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------CHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccc-chHHHHHHHHHHHHHHHHHHH-H
Confidence 99999999999999999999 333444445544 799999999999999998887 8
Q ss_pred HHHHHHHHhhhcCCCCcchhhhHHHHHhhhHHHHHHHHHHHHH-hhcCCh--hHHHHHhhHHHH---HHhhhHHHHHHhc
Q 036615 227 FASEKRLCEQIFDGVGTAIDDACFMETVKGPAIQLFNFAEAIS-ISRRSP--EKLFKILDLHDA---LVELMPDIEIVFD 300 (600)
Q Consensus 227 ~~~Er~L~~~Vf~~~~~~~~~~~F~~i~~~~~~~Ll~f~~~va-~~~rsp--eklf~lLdmye~---L~~l~p~~~~lf~ 300 (600)
|++||+||++||+. ..+..||.+||++++.+|+.||++|+ .++|+| +++|.+|+||+. |.+++|+|+.+|+
T Consensus 211 ~~~Er~L~~~vf~~---~~~~~~F~~i~~~~~~~ll~f~e~v~~~~kr~~~~~~~~~~l~l~~~l~~l~~l~p~~~~~f~ 287 (571)
T 2pft_A 211 AQSEYRLLMEIIPE---HHQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQVLQ 287 (571)
T ss_dssp HHHHHHHHHHHSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999987 57889999999999999999999997 577777 666555555554 9999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCC-CCcccccHHHHHHHHHHHHhhHHHHHHHHhcCCCC
Q 036615 301 SKSSDLIRVQAAEILSRLAEAARGILSEFENAVLKEP-SKVPVP-GGTIHPLTRYVMNYISLISDYKQTLIELIMSKPST 378 (600)
Q Consensus 301 ~~~~~~vr~~~~~~l~~L~~~~~~~~~ef~~~I~~~~-sk~~~~-dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~~~~ 378 (600)
|+++ .++.++.+++++|+++++++|.||.+.|++++ ++.++| ||+|||+|+||||||+.|++|+++|..+|.++...
T Consensus 288 g~~~-~~~~~~~~~l~~L~~~~~~~f~ef~~~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~~y~~~l~~il~~~~~~ 366 (571)
T 2pft_A 288 GTAA-STKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQETS 366 (571)
T ss_dssp TSCH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHHHTHHHHHHHHHTTC--
T ss_pred cCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCccchHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 9887 57899999999999999999999999999997 777766 99999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCCccccccCCCcHHHHHHHHHHHHHHhHHhhhhcCccchhhhHHhhhhHHHHHHHhhCChhHHHHhh--
Q 036615 379 GSRYSGDPSTPDMDFAELEGKTPLALHLIWVIVILQFNLDGKSKHYKDASLVHLFMMNNVHYIVQKVKSSPELREMIG-- 456 (600)
Q Consensus 379 ~~~~~~~~~~p~~~~~~~~~~~~l~~~i~~ii~~L~~nLe~KSk~ykd~aL~~lFLmNN~~yI~~~v~~S~~L~~lLG-- 456 (600)
.+ ... .++.++.++|+.++.+||++|+.|||+|||.|+|++|++||||||+|||+++|++| +|..+||
T Consensus 367 ~~----~~~-----~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~l~~iFLmNN~~yI~~~v~~s-~l~~llg~~ 436 (571)
T 2pft_A 367 SS----ATS-----YSSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKS-ELIQLVAVT 436 (571)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTTTTS-THHHHHHTT
T ss_pred cc----ccc-----CCCCCcccHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHhhHHHHHHHHhcc-chHHHhCcc
Confidence 10 000 01123447899999999999999999999999999999999999999999999998 9999999
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccCCcc--CCCCCCccchHHHHHHHHHHHHHHHHHHHHccccccCChH
Q 036615 457 -DDYLRKMTGKFRQAATNYQRATWVKVLYCLRDEGLHV--SGGFSSGVSKSALRERFKSFNAMFEEVHRTQATWLIPDSQ 533 (600)
Q Consensus 457 -~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~d~~~~~--sg~~~~~~~r~~iKekfk~FN~~FEE~~~~Q~~w~VpD~~ 533 (600)
++|+++|+.+++||++.| +++|++|++||.+++.+. +|+..++++|+.|||||++||.+|||+|++|+.|+||||+
T Consensus 437 ~~~~~~~~~~~i~~~~~~Y-~~sW~~v~~~L~~~~~~~~~~g~~ls~~~r~~iKe~fk~Fn~~Fee~~~~q~~w~VpD~~ 515 (571)
T 2pft_A 437 QKTAERSYREHIEQQIQTY-QRSWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVWAIPDTE 515 (571)
T ss_dssp CTTHHHHHHHHHHHHHHHH-HGGGHHHHTTTSGGGSCSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHH
T ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCcCCCCCCcCcccHHHHHHHHHHHHHHHHHHHHhCCcccCcCHH
Confidence 689999999999999999 899999999999876543 4445667789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccCHHHHHHHHHHhhCCCC
Q 036615 534 LREELRISISEKLIPAYRSFLGRFRSHIESSKHPENYIKYSVEDLETSVLDFFEGYP 590 (600)
Q Consensus 534 LRe~Lr~~i~~~ViPaY~~F~~ky~~~~~~~k~~~KYiKYtpedle~~L~~LFeg~~ 590 (600)
||++||++|+++|+|+|++||+||+. ++|+|||+|||||||++||++|++||+|++
T Consensus 516 LR~~Lr~~i~~~v~paY~~F~~r~~~-~~~~k~~~KyiKytpe~le~~L~~LFeg~a 571 (571)
T 2pft_A 516 QRDKIRQAQKDIVKETYGAFLHRYGS-VPFTKNPEKYIKYRVEQVGDMIDRLFDTSA 571 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-SCCCSCHHHHCCCCHHHHHHHHHTSSSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc-CcccCCCCCccccCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999 599999999999999999999999999974
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=100.00 E-value=2.7e-86 Score=741.31 Aligned_cols=489 Identities=17% Similarity=0.211 Sum_probs=395.2
Q ss_pred ccHHHHHHHHHhhcCCchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCCCCCCCCCCC
Q 036615 11 GSFESAEKIILRWDSTASEEAREKMIFEVKVNFAIQIAMARLEDEFRNILLAHIHAFDVDSLATDPSSSSCSRTESGGDH 90 (600)
Q Consensus 11 ~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~~am~~Le~EF~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (600)
++++.|.+.|.++++.+++.....++- .++..|+++|+.+||.||+.||. +++|+||..+..
T Consensus 46 ~rl~~al~~~~~~n~~s~e~~~f~g~l-~~~~~L~~~g~~~L~~~F~~lL~-~s~p~~p~~~i~---------------- 107 (564)
T 2b1e_A 46 HKLDDMLEDIQSGQANREENSEFHGIL-THLEQLIKRSEAQLRVYFISILN-SIKPFDPQINIT---------------- 107 (564)
T ss_dssp HHHHHHHHHHHC----CCCSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-TSCCCCHHHHHH----------------
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHH-hCCCCCHHHhhc----------------
Confidence 788999999999998876421111111 37788899999999999999999 689999875421
Q ss_pred CCCChhHHhhhcccccccccCCCCCcccccccccccCCCccccccCCCccccccCCCChhHHHHHHHHHHHHHHcCCchH
Q 036615 91 FDDDDEDRQQLGQEQEKDHLDSTTSSTTYDVLKHSESNTSVSSSYRSTSCIREIELIPEETIEDLKNIAERMIAAGYLRE 170 (600)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~L~~Ia~~m~~~g~~~e 170 (600)
. + .+++.+|++++.+|+.||+||+.+|+.++
T Consensus 108 ------k-------------~------------------------------~p~p~l~~~~l~~L~~Ia~~m~~~g~~~~ 138 (564)
T 2b1e_A 108 ------K-------------K------------------------------MPFPYYEDQQLGALSWILDYFHGNSEGSI 138 (564)
T ss_dssp ------H-------------T------------------------------CCCCCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------c-------------C------------------------------CCCCCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 0 0 13578999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHhcCccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhhhHH
Q 036615 171 CTQVYGSVRKSAIDSSFKRLGVEKLSIGDIQRLEWDALETKIRRWIRAAKVCVRILFASEKRLCEQIFDGVGTAIDDACF 250 (600)
Q Consensus 171 c~~~Y~~~R~~~l~~sL~~L~~e~ls~~~v~k~~~~~le~ki~~wi~~~~~~vk~L~~~Er~L~~~Vf~~~~~~~~~~~F 250 (600)
|+++|+++|+.+|+++|+.|..........++++|+..+..|..|+.++ ..|+++|+.||++||+.++ ..++.||
T Consensus 139 ~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~----~~l~~~E~~L~~~vf~~~~-~~~~~~f 213 (564)
T 2b1e_A 139 IQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEAL----LGFIANEKSLVDDLYSQYT-ESKPHVL 213 (564)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHH----HHHHHHHHHHHHHHSCTTC-TTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHH----HHHHHHHHHHHHHHcCCcc-hhhHHHH
Confidence 9999999999999999999865433355567789999889999999987 5699999999999999865 4889999
Q ss_pred HHHhhhHHHHHHHHHHHH-HhhcCCh-hHHHHHhhHHHHHHhhhHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 036615 251 METVKGPAIQLFNFAEAI-SISRRSP-EKLFKILDLHDALVELMPDIEIVFDSKSSDLIRVQAAEILSRLAEAARGILSE 328 (600)
Q Consensus 251 ~~i~~~~~~~Ll~f~~~v-a~~~rsp-eklf~lLdmye~L~~l~p~~~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~~~e 328 (600)
.+|+++++..+...++.+ +.++++| +++|.+|+||++|.++ ..+|.|..+... .++.+++++|+++++++|.|
T Consensus 214 ~~i~~~~l~~~~~~l~~~~~~~k~~~~~~~f~~l~~~~~l~~~----~~~~~~~~~~~~-~~~~~~l~~L~~~~~~~~~e 288 (564)
T 2b1e_A 214 SQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESINDV----KKSLRGKELQNY-NLLQDCTQEVRQVTQSLFRD 288 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC-----CCTHHHHHHHHHHHH----HHHTTTCCCTTH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhcchhHHHHHHHHHHH----HHHHcccccchH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999998544444432 2466788 8999999999999874 488988776544 89999999999999999999
Q ss_pred HHHHHhcCCCCC-C-CCCCcccccHHHHHHHHHHHHhhHHHHHHHHhc-----CCCCC-CC-CCCCCCCCCCccccccCC
Q 036615 329 FENAVLKEPSKV-P-VPGGTIHPLTRYVMNYISLISDYKQTLIELIMS-----KPSTG-SR-YSGDPSTPDMDFAELEGK 399 (600)
Q Consensus 329 f~~~I~~~~sk~-~-~~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~-----~~~~~-~~-~~~~~~~p~~~~~~~~~~ 399 (600)
|++.|+.++++. + |+||||||+|+||||||+.|++|+++|..+|.+ |.... +. .+. +|.....++++.
T Consensus 289 f~~~i~~~~~~~~~~p~dG~Vh~lT~~vmnyl~~l~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 365 (564)
T 2b1e_A 289 AIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYT---LQNEALNWEDHN 365 (564)
T ss_dssp HHHHHHHHHHHSCSCCTTCCCCHHHHHHHHHHHHHGGGHHHHHHHTTTCCGGGTSCTTCCGGGSC---CCC----CSSHH
T ss_pred HHHHHHhccCCCCCCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCCcccccccccc---cccccccCCCcc
Confidence 999999886543 3 479999999999999999999999999999974 32110 00 000 111001122344
Q ss_pred CcHHHHHHHHHHHHHHhHHhh------------------hhcCccchhhhHHhhhhHHHHHHHhhCChhHHHHhhhhHHH
Q 036615 400 TPLALHLIWVIVILQFNLDGK------------------SKHYKDASLVHLFMMNNVHYIVQKVKSSPELREMIGDDYLR 461 (600)
Q Consensus 400 ~~l~~~i~~ii~~L~~nLe~K------------------Sk~ykd~aL~~lFLmNN~~yI~~~v~~S~~L~~lLG~~w~~ 461 (600)
++|+.++.++|.+|+.|||+| |+.|+|++|+ +|||||+|||+++|++| +|..+||++|.+
T Consensus 366 ~~l~~~i~~~i~~L~~~Le~ka~~~~~~~~~~~l~~~~ss~~~~d~~l~-~FllNN~~yI~~~v~~S-eL~~lLg~~~~~ 443 (564)
T 2b1e_A 366 VLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIG-FFILMNLTLVEQIVEKS-ELNLMLAGEGHS 443 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCSCTTCSSCTTHHHHH-HHHHHHHHHHHHHHHTS-THHHHTTTHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhcCHHHHH-HHHHHhHHHHHHHHhhh-hhHhHhcHHHHH
Confidence 689999999999999999999 5679999996 59999999999999998 999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcccCCccCCCCCCccchHHHHHHHHHHHHHHHHHHHHccccccCChHHHHHHHHH
Q 036615 462 KMTGKFRQAATNYQRATWVKVLYCLRDEGLHVSGGFSSGVSKSALRERFKSFNAMFEEVHRTQATWLIPDSQLREELRIS 541 (600)
Q Consensus 462 ~~~~~v~~~~~~Y~~~sW~~vl~~L~d~~~~~sg~~~~~~~r~~iKekfk~FN~~FEE~~~~Q~~w~VpD~~LRe~Lr~~ 541 (600)
+|++++++| +.|++++|++|++||.+++...++++ ++++|+.+||||++||++|||+|++|++|+||||+||++||++
T Consensus 444 ~~~~~~~~~-~~y~~~sW~~v~~~L~~~~~~~~~~k-s~~~k~~iKe~fk~FN~~Fee~~~~q~~w~vpD~~LR~~Lr~~ 521 (564)
T 2b1e_A 444 RLERLKKRY-ISYMVSDWRDLTANLMDSVFIDSSGK-KSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSE 521 (564)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSS-CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhccccCCCCCC-ccccHHHHHHHHHHHHHHHHHHHHhcCcccCcCHHHHHHHHHH
Confidence 999999999 58999999999999998764333333 5688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCcccccCHHHHHHHHHHhh
Q 036615 542 ISEKLIPAYRSFLGRFRSHIESSKHPENYIKYSVEDLETSVLDFF 586 (600)
Q Consensus 542 i~~~ViPaY~~F~~ky~~~~~~~k~~~KYiKYtpedle~~L~~LF 586 (600)
|+++|+|+|++||+||+. ++|||+|||||||++||++|++|+
T Consensus 522 i~~~v~P~Y~~F~~ry~~---~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 522 IISLVMPMYERFYSRYKD---SFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp HHHHHHHHHHHHHHHHGG---GSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc---ccCCCCCcccCCHHHHHHHHHHhc
Confidence 999999999999999996 689999999999999999999996
No 3
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=68.05 E-value=75 Score=30.67 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhHHHHHHHHHhcCccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036615 152 IEDLKNIAERMIAAGYLRECTQVYGSVRKSAIDSSFKRLGVEKLSIGDIQRLEWDALETKIRRWIRAAKVCVRILFASEK 231 (600)
Q Consensus 152 v~~L~~Ia~~m~~~g~~~ec~~~Y~~~R~~~l~~sL~~L~~e~ls~~~v~k~~~~~le~ki~~wi~~~~~~vk~L~~~Er 231 (600)
...++....+|++-|........|=+.|+..+...+..++.+. -+..||..+..++-.....=-
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~g----------------d~~~Yi~~Ls~i~Fs~I~~t~ 154 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVD----------------NPTNYLTQLAVIRFQTIKKTV 154 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CC----------------SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccC----------------CHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999998875431 133566655544433333322
Q ss_pred HHHhhhcCCCCcchhhhHHHHHhhhHHHHHHHHHHHHHh
Q 036615 232 RLCEQIFDGVGTAIDDACFMETVKGPAIQLFNFAEAISI 270 (600)
Q Consensus 232 ~L~~~Vf~~~~~~~~~~~F~~i~~~~~~~Ll~f~~~va~ 270 (600)
.-...+|++. ...|+..++.=+...+-.|+..|..
T Consensus 155 ~~f~~~F~~~----~~~~~S~lV~Wa~~eve~f~~l~~r 189 (235)
T 2d2s_A 155 EDFQDIFKEL----GAKISSILVDWCSDEVDNHFKLIDK 189 (235)
T ss_dssp HHHHHHSTTC----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC----CcccccHHHHHHHHHHHHHHHHHHH
Confidence 3344578762 2356666666666666677777653
No 4
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=47.03 E-value=4.3 Score=32.64 Aligned_cols=20 Identities=20% Similarity=0.677 Sum_probs=11.4
Q ss_pred HHHHHHhhccccCCCCCCCcccccCH
Q 036615 550 YRSFLGRFRSHIESSKHPENYIKYSV 575 (600)
Q Consensus 550 Y~~F~~ky~~~~~~~k~~~KYiKYtp 575 (600)
-.+|++||.+.+ +|||||||
T Consensus 77 Ia~FLeKYS~~L------nkYVkF~~ 96 (97)
T 2x5h_A 77 IAEFLEKYSDFL------NEYVKFTP 96 (97)
T ss_dssp HHHHHHHTHHHH------HHHC----
T ss_pred HHHHHHHHHHHH------HHhhcccc
Confidence 356888887654 58889886
No 5
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum}
Probab=23.68 E-value=4.5e+02 Score=27.27 Aligned_cols=75 Identities=13% Similarity=0.172 Sum_probs=43.0
Q ss_pred HHHHHHHhhCChhHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccCCccCCCCCCccchHHHHHHHHHHHHHH
Q 036615 438 VHYIVQKVKSSPELREMIGDDYLRKMTGKFRQAATNYQRATWVKVLYCLRDEGLHVSGGFSSGVSKSALRERFKSFNAMF 517 (600)
Q Consensus 438 ~~yI~~~v~~S~~L~~lLG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~d~~~~~sg~~~~~~~r~~iKekfk~FN~~F 517 (600)
+..|...|. .+..-++++.+.-+...+++|..-|+ +.+.+++-|.+-.. +| ++...||=..+.|-.+|
T Consensus 178 ~aeLw~~Is---d~I~nIksdYldvYa~IvK~YTdyyQ--dfNeaLSklSdyIs--AG-----kDGNkIkFd~~sfk~al 245 (407)
T 2p7n_A 178 DSDLWDMIS---DQIGKIKDNYLGVYENVVGQYTDFYK--AFSDILSQMANWIK--PG-----GDGNKVKLNVDALKAAL 245 (407)
T ss_dssp HHHHHHHHH---HHHHHHHHHTHHHHHHHHHHHHHHHH--HHHHHHHHHGGGCC----------------CCHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhc--cC-----CCCCeeeecHHHHHHHH
Confidence 445555554 44556678888889888888888886 57888888854321 12 11222332334555566
Q ss_pred HHHHHHc
Q 036615 518 EEVHRTQ 524 (600)
Q Consensus 518 EE~~~~Q 524 (600)
+++..+.
T Consensus 246 ~kl~~KY 252 (407)
T 2p7n_A 246 EKLKKDF 252 (407)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 6665554
No 6
>3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A
Probab=23.04 E-value=73 Score=31.65 Aligned_cols=44 Identities=5% Similarity=0.206 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhccccC------CCCCCCcccccCHHHHHHHHHHhhCCC
Q 036615 545 KLIPAYRSFLGRFRSHIE------SSKHPENYIKYSVEDLETSVLDFFEGY 589 (600)
Q Consensus 545 ~ViPaY~~F~~ky~~~~~------~~k~~~KYiKYtpedle~~L~~LFeg~ 589 (600)
.|+-.|..||+.|...+. .. +-.|.||+.+..+.+-|+++...-
T Consensus 142 ~IVk~YTdyyQdfNe~LSKlSd~IsA-kDGN~IKFD~~sfk~~l~~l~~kY 191 (303)
T 3nft_A 142 TIVEGLTKYFQSVADVMSKLQDYISA-KDDKNMKIDGGKIKALIQQVIDHL 191 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGEEE-ETTTEEEECHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-cCCCeeeecHHHHHHHHHHHHHhc
Confidence 467778888877765331 12 346789999999999999876543
No 7
>2wvq_A Small S protein; prion-binding protein, prion, prion regulatory domain, heter incompatibility, prion- binding protein; 2.00A {Podospora anserina} PDB: 2wvn_A 2wvo_A
Probab=20.73 E-value=3.4e+02 Score=25.69 Aligned_cols=102 Identities=16% Similarity=0.229 Sum_probs=56.8
Q ss_pred HhHHHHHHhhcccCCccCCCCCCccchHHHHHHHHHHHHHHHHHHHHcccccc--CChHHHHHHHHHHHHHHHHHHHHHH
Q 036615 477 ATWVKVLYCLRDEGLHVSGGFSSGVSKSALRERFKSFNAMFEEVHRTQATWLI--PDSQLREELRISISEKLIPAYRSFL 554 (600)
Q Consensus 477 ~sW~~vl~~L~d~~~~~sg~~~~~~~r~~iKekfk~FN~~FEE~~~~Q~~w~V--pD~~LRe~Lr~~i~~~ViPaY~~F~ 554 (600)
..|+..+....+..+.. ...+....+.++.-+..--.-|+++-+.|..|.+ |++++-. + . ..-+-|+++..+
T Consensus 57 ~~WG~avGL~~~~~~~~--~l~~~~~~~~v~~iL~~I~~lf~~~~~l~~Ry~~~~~~~~~~~-~--~-~~~l~~~~~~~~ 130 (225)
T 2wvq_A 57 SRWGEAVKINDDPRFHS--DAPTDKSVQLAKSIVEEILLLFESAQKTSKRYELVADQQDLVV-F--E-DKDMKPIGRALH 130 (225)
T ss_dssp HHHHHHTTTTTCGGGGC--SSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGGCB-C--C-GGGSCHHHHHHH
T ss_pred HHHHHHhCCCCCccccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccc-c--C-hhhHHHHHHHHH
Confidence 56999998876543221 1112233567788888778788888777777765 3322210 0 0 112223333333
Q ss_pred H-------hhccccCCCCCCCcccccCHHHHHHHHHHh
Q 036615 555 G-------RFRSHIESSKHPENYIKYSVEDLETSVLDF 585 (600)
Q Consensus 555 ~-------ky~~~~~~~k~~~KYiKYtpedle~~L~~L 585 (600)
+ +-+.. ......-+++-|+.+.++.+|.++
T Consensus 131 ~~~r~~~~~rq~~-~s~~~r~~Wai~Dk~~F~~LV~~i 167 (225)
T 2wvq_A 131 RRLNDLVSRRQKQ-TSLAKKTAWALYDGKSLEKIVDQV 167 (225)
T ss_dssp HHHHHHHHHHSCC-CCSCCCCCEEECSHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCccceeeeeeechHHHHHHHHHH
Confidence 3 32222 122334577889999999887765
No 8
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=20.29 E-value=3.6e+02 Score=27.33 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC-CCCcccccHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCccccc
Q 036615 318 LAEAARGILSEFENAVLKEPSKVPV-PGGTIHPLTRYVMNYISLISDYKQTLIELIMSKPSTGSRYSGDPSTPDMDFAEL 396 (600)
Q Consensus 318 L~~~~~~~~~ef~~~I~~~~sk~~~-~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~~~~~~~~~~~~~~p~~~~~~~ 396 (600)
|..+..++..-+..+|+.|.-. |+ +.+.-..-.+.|+.-...+.+..+.+.++ +|+... ...
T Consensus 19 l~~~~~k~~~~v~~Ai~~Dk~~-~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L--~WpD~~--------------~~~ 81 (341)
T 3swh_A 19 LDENEEVSRDFLHGALERDKKD-GFQQTSEHALFSCSVVDVFSQLNQSFEIIKKL--ECPDPQ--------------IVG 81 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHS--CCSCHH--------------HHH
T ss_pred HHHHHHHHHHHHHHHHhhhccC-CccccccCccccchHHHHHHHHHHHHHHHHHC--CCCCHH--------------HHH
Confidence 3344444555555566543211 11 11122244566777777766666655554 464210 000
Q ss_pred cCCCcHHHHHHHHHHHHHHhHHhhhhcCccch--hhhHHhhhhHHHHHHHhh
Q 036615 397 EGKTPLALHLIWVIVILQFNLDGKSKHYKDAS--LVHLFMMNNVHYIVQKVK 446 (600)
Q Consensus 397 ~~~~~l~~~i~~ii~~L~~nLe~KSk~ykd~a--L~~lFLmNN~~yI~~~v~ 446 (600)
.=.+.|+.-|+.++..-...+..|-..|.... -.---+|||+.|+...+.
T Consensus 82 ~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~~~e~~~~~Cv~lNNie~lR~~L~ 133 (341)
T 3swh_A 82 HYMRRFAKTISNVLLQYADIVSKDFASYCSKEKEKVPCILMNNTQQLRVQLE 133 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhcccHHHHHHHHH
Confidence 00012344444455455556666655443322 123347899999998886
No 9
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=18.63 E-value=63 Score=19.62 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHcc
Q 036615 509 RFKSFNAMFEEVHRTQA 525 (600)
Q Consensus 509 kfk~FN~~FEE~~~~Q~ 525 (600)
||++|-..|..++++-+
T Consensus 2 rfkrfrkkfkklfkkls 18 (27)
T 2ket_A 2 RFKRFRKKFKKLFKKLS 18 (27)
T ss_dssp CHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 58888888888887643
No 10
>3pf6_A Hypothetical protein PP-LUZ7_GP033; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.60A {Pseudomonas phage LUZ7}
Probab=18.19 E-value=1e+02 Score=22.57 Aligned_cols=27 Identities=30% Similarity=0.717 Sum_probs=19.2
Q ss_pred CCCCcccccHHHHHHHHHHHHhhHHHHHHHHhcC
Q 036615 342 VPGGTIHPLTRYVMNYISLISDYKQTLIELIMSK 375 (600)
Q Consensus 342 ~~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~ 375 (600)
.|+|+-|. |++.|..|.++|-.++..|
T Consensus 33 ~pggshhd-------fmra~mgyhntl~~~~~e~ 59 (62)
T 3pf6_A 33 FPGGTHHD-------FMRALMGYHNTLVKVMEEQ 59 (62)
T ss_dssp SCSSCHHH-------HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCchHH-------HHHHHHhhhHHHHHHHHhh
Confidence 57888774 6666677777777777666
Done!