BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036617
         (75 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P52028|DPO1T_THET8 DNA polymerase I, thermostable OS=Thermus thermophilus (strain HB8
           / ATCC 27634 / DSM 579) GN=polA PE=3 SV=2
          Length = 834

 Score = 29.6 bits (65), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 35  AVNIVILASNDTLDLLPPDDP-LLNKCIDP 63
           A ++ +LAS + LDL+P DDP LL   +DP
Sbjct: 355 AKDLAVLASREGLDLVPGDDPMLLAYLLDP 384


>sp|P80194|DPO1_THECA DNA polymerase I, thermostable OS=Thermus caldophilus GN=polA PE=1
           SV=2
          Length = 834

 Score = 29.6 bits (65), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 35  AVNIVILASNDTLDLLPPDDP-LLNKCIDP 63
           A ++ +LAS + LDL+P DDP LL   +DP
Sbjct: 355 AKDLAVLASREGLDLVPGDDPMLLAYLLDP 384


>sp|Q5FLV8|MURI_LACAC Glutamate racemase OS=Lactobacillus acidophilus (strain ATCC
          700396 / NCK56 / N2 / NCFM) GN=murI PE=3 SV=1
          Length = 267

 Score = 28.9 bits (63), Expect = 9.7,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 18 EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP 52
          E +INL RR+++ LL + V ++++A N    +  P
Sbjct: 48 EDIINLTRRSVKFLLEKNVKLIVIACNTATAVAMP 82


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.141    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,298,587
Number of Sequences: 539616
Number of extensions: 755046
Number of successful extensions: 1804
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1801
Number of HSP's gapped (non-prelim): 4
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)