Query 036617
Match_columns 75
No_of_seqs 55 out of 57
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 03:51:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10200 putative racemase; Pr 99.6 4.5E-15 9.7E-20 106.6 6.8 69 4-74 156-227 (230)
2 COG1794 RacX Aspartate racemas 99.6 7.8E-15 1.7E-19 108.0 6.8 69 4-73 155-225 (230)
3 TIGR00035 asp_race aspartate r 99.6 1E-14 2.3E-19 103.5 7.0 70 4-74 155-225 (229)
4 TIGR00067 glut_race glutamate 99.2 1.6E-11 3.5E-16 89.3 4.0 69 5-73 140-213 (251)
5 PRK00865 glutamate racemase; P 98.8 1.4E-09 3.1E-14 79.1 2.1 62 12-73 152-218 (261)
6 PRK07475 hypothetical protein; 98.7 1.5E-08 3.2E-13 73.5 3.1 66 4-69 162-231 (245)
7 PF01177 Asp_Glu_race: Asp/Glu 98.3 1.7E-07 3.8E-12 64.0 0.2 68 5-72 142-216 (216)
8 COG0796 MurI Glutamate racemas 95.7 0.0057 1.2E-07 46.2 1.5 56 18-73 160-218 (269)
9 TIGR00035 asp_race aspartate r 91.4 0.27 5.9E-06 34.9 3.5 60 12-71 52-112 (229)
10 cd00215 PTS_IIA_lac PTS_IIA, P 90.2 0.66 1.4E-05 30.0 4.2 29 5-33 19-47 (97)
11 PRK10200 putative racemase; Pr 90.1 0.61 1.3E-05 33.5 4.3 60 6-65 45-106 (230)
12 TIGR00823 EIIA-LAC phosphotran 90.0 0.69 1.5E-05 30.0 4.2 29 5-33 21-49 (99)
13 PRK09591 celC cellobiose phosp 89.2 0.85 1.8E-05 29.9 4.2 29 5-33 24-52 (104)
14 COG4126 Hydantoin racemase [Am 88.9 0.38 8.2E-06 36.0 2.6 57 15-71 153-211 (230)
15 PF02255 PTS_IIA: PTS system, 88.8 0.99 2.1E-05 29.0 4.2 29 5-33 18-46 (96)
16 PRK10481 hypothetical protein; 88.3 0.69 1.5E-05 34.0 3.6 34 18-51 73-107 (224)
17 PRK10454 PTS system N,N'-diace 88.1 1.1 2.3E-05 30.1 4.1 29 5-33 35-63 (115)
18 COG1794 RacX Aspartate racemas 86.6 0.54 1.2E-05 35.1 2.2 60 10-69 50-110 (230)
19 PRK10481 hypothetical protein; 85.8 0.47 1E-05 34.9 1.5 51 22-72 169-221 (224)
20 COG1447 CelC Phosphotransferas 80.1 4.1 8.8E-05 27.2 4.2 29 5-33 23-51 (105)
21 PRK07475 hypothetical protein; 79.6 3 6.5E-05 30.2 3.7 36 9-44 52-87 (245)
22 PF07302 AroM: AroM protein; 78.4 3.3 7.2E-05 30.6 3.6 34 19-52 71-104 (221)
23 PF13374 TPR_10: Tetratricopep 75.3 7.4 0.00016 19.2 3.5 26 8-33 9-34 (42)
24 TIGR03504 FimV_Cterm FimV C-te 72.2 4.7 0.0001 22.6 2.5 18 12-29 10-27 (44)
25 TIGR00067 glut_race glutamate 72.1 6.4 0.00014 28.7 3.8 51 14-64 39-92 (251)
26 PRK00865 glutamate racemase; P 72.1 3.3 7.1E-05 30.1 2.2 56 15-71 47-104 (261)
27 PRK10564 maltose regulon perip 72.0 4.4 9.6E-05 31.4 3.0 24 5-28 260-284 (303)
28 PF01177 Asp_Glu_race: Asp/Glu 67.7 7.1 0.00015 26.4 3.0 51 20-70 50-102 (216)
29 PF12854 PPR_1: PPR repeat 67.0 5.5 0.00012 20.4 1.9 15 12-26 18-32 (34)
30 PF13812 PPR_3: Pentatricopept 65.2 14 0.0003 17.6 3.1 16 12-27 12-27 (34)
31 PF13174 TPR_6: Tetratricopept 63.2 13 0.00028 17.5 2.7 23 8-30 7-29 (33)
32 PF13432 TPR_16: Tetratricopep 61.9 13 0.00028 20.4 2.9 22 7-28 3-24 (65)
33 PF14559 TPR_19: Tetratricopep 61.3 9.9 0.00021 20.8 2.4 20 11-30 1-20 (68)
34 PF01910 DUF77: Domain of unkn 58.5 14 0.0003 23.4 3.0 28 14-41 43-70 (92)
35 PRK11274 glcF glycolate oxidas 57.6 20 0.00043 27.2 4.1 33 12-44 213-248 (407)
36 PF07721 TPR_4: Tetratricopept 56.5 16 0.00034 17.5 2.4 21 5-25 5-25 (26)
37 PF13911 AhpC-TSA_2: AhpC/TSA 55.8 11 0.00024 23.5 2.1 46 24-70 2-51 (115)
38 PF07719 TPR_2: Tetratricopept 54.7 23 0.00051 16.7 3.2 24 6-29 6-29 (34)
39 TIGR02990 ectoine_eutA ectoine 54.4 6.7 0.00015 28.7 1.1 50 25-74 171-223 (239)
40 PRK06259 succinate dehydrogena 52.9 21 0.00045 28.0 3.6 60 10-69 305-365 (486)
41 PHA02608 67 prohead core prote 51.1 24 0.00052 22.6 3.1 20 9-28 5-24 (80)
42 PF07355 GRDB: Glycine/sarcosi 50.3 26 0.00056 27.7 3.8 29 16-44 321-349 (349)
43 PF13041 PPR_2: PPR repeat fam 50.2 26 0.00057 18.6 2.8 17 12-28 14-30 (50)
44 KOG3139 N-acetyltransferase [G 49.7 25 0.00053 25.2 3.3 26 19-44 101-126 (165)
45 PF07302 AroM: AroM protein; 49.2 18 0.00039 26.7 2.6 23 21-43 164-186 (221)
46 KOG1586 Protein required for f 48.6 33 0.00071 26.6 4.0 31 5-35 77-107 (288)
47 PF07729 FCD: FCD domain; Int 48.2 28 0.00061 20.4 3.0 21 9-29 104-124 (125)
48 COG4649 Uncharacterized protei 47.8 19 0.00042 26.8 2.6 22 8-29 174-195 (221)
49 COG4914 Predicted nucleotidylt 47.0 21 0.00046 26.0 2.7 33 20-52 6-38 (190)
50 TIGR00106 uncharacterized prot 46.4 37 0.00081 21.7 3.5 28 14-41 45-72 (97)
51 TIGR00756 PPR pentatricopeptid 46.1 32 0.0007 15.8 3.0 16 12-27 11-26 (35)
52 cd03413 CbiK_C Anaerobic cobal 45.1 8.8 0.00019 24.6 0.4 32 15-51 36-67 (103)
53 PF10414 CysG_dimeriser: Siroh 43.8 42 0.0009 19.1 3.2 22 8-29 39-60 (60)
54 TIGR02267 Myxococcus xanthus p 41.0 33 0.0007 23.6 2.7 26 5-30 76-105 (123)
55 COG4081 Uncharacterized protei 40.6 15 0.00032 26.0 1.0 15 38-52 6-20 (148)
56 PF02203 TarH: Tar ligand bind 38.9 35 0.00075 22.0 2.6 30 4-33 129-158 (171)
57 cd07581 nitrilase_3 Uncharacte 38.7 96 0.0021 21.4 4.9 56 15-70 10-72 (255)
58 PF02754 CCG: Cysteine-rich do 38.4 73 0.0016 17.7 3.9 33 12-44 46-78 (85)
59 TIGR03379 glycerol3P_GlpC glyc 38.4 28 0.00062 26.3 2.3 59 10-70 337-395 (397)
60 PF14691 Fer4_20: Dihydroprymi 38.2 35 0.00077 22.3 2.5 18 9-26 46-63 (111)
61 cd05804 StaR_like StaR_like; a 37.7 67 0.0015 22.9 4.1 30 4-33 310-339 (355)
62 TIGR03288 CoB_CoM_SS_B CoB--Co 37.5 60 0.0013 23.6 3.9 59 12-70 199-266 (290)
63 PF03745 DUF309: Domain of unk 37.1 41 0.0009 19.8 2.5 18 7-24 45-62 (62)
64 PF13414 TPR_11: TPR repeat; P 37.0 55 0.0012 17.8 2.9 25 6-30 8-32 (69)
65 PF13428 TPR_14: Tetratricopep 36.4 67 0.0014 16.7 3.3 23 8-30 8-30 (44)
66 COG0796 MurI Glutamate racemas 35.9 58 0.0013 24.8 3.7 28 17-44 49-76 (269)
67 PF08544 GHMP_kinases_C: GHMP 35.9 48 0.001 19.0 2.6 21 9-29 2-22 (85)
68 COG2178 Predicted RNA-binding 35.1 56 0.0012 24.2 3.3 26 7-32 35-60 (204)
69 PF01535 PPR: PPR repeat; Int 35.1 52 0.0011 15.0 2.6 17 12-28 11-27 (31)
70 COG0153 GalK Galactokinase [Ca 34.4 67 0.0015 25.8 3.9 29 5-33 283-311 (390)
71 smart00028 TPR Tetratricopepti 34.4 43 0.00092 13.9 2.4 22 8-29 8-29 (34)
72 PF12870 Lumazine_bd: Lumazine 34.3 21 0.00047 21.0 0.9 23 7-29 15-37 (111)
73 PF04121 Nup84_Nup100: Nuclear 33.7 42 0.00091 27.9 2.8 32 2-33 133-165 (697)
74 PLN02706 glucosamine 6-phospha 33.1 77 0.0017 19.8 3.4 25 20-44 103-127 (150)
75 PLN02757 sirohydrochlorine fer 33.1 15 0.00033 25.2 0.1 32 17-52 53-84 (154)
76 PF09001 DUF1890: Domain of un 32.7 21 0.00046 24.9 0.8 11 39-49 2-12 (139)
77 PLN02446 (5-phosphoribosyl)-5- 32.6 37 0.00081 25.6 2.2 19 26-44 95-113 (262)
78 PF06957 COPI_C: Coatomer (COP 32.5 75 0.0016 25.6 4.0 27 7-33 209-236 (422)
79 PF13698 DUF4156: Domain of un 32.2 69 0.0015 20.2 3.1 24 17-43 47-70 (93)
80 PF13176 TPR_7: Tetratricopept 31.4 69 0.0015 16.1 2.5 17 12-28 10-26 (36)
81 COG1355 Predicted dioxygenase 31.3 62 0.0013 24.9 3.2 38 14-52 161-198 (279)
82 TIGR03338 phnR_burk phosphonat 30.7 67 0.0015 21.8 3.0 23 9-31 187-209 (212)
83 PRK01217 hypothetical protein; 30.6 1.4E+02 0.0031 19.8 4.5 37 5-41 42-86 (114)
84 PRK10225 DNA-binding transcrip 30.2 58 0.0013 22.9 2.7 25 9-33 205-229 (257)
85 PF02259 FAT: FAT domain; Int 30.2 1.1E+02 0.0023 21.7 4.1 31 3-33 31-61 (352)
86 PHA00371 mat maturation protei 30.1 51 0.0011 26.8 2.6 23 4-26 161-183 (418)
87 PRK05800 cobU adenosylcobinami 30.0 1.2E+02 0.0026 20.7 4.2 65 5-70 81-150 (170)
88 PF08579 RPM2: Mitochondrial r 30.0 61 0.0013 22.1 2.7 34 5-38 43-78 (120)
89 PF02574 S-methyl_trans: Homoc 29.4 94 0.002 22.7 3.8 27 16-42 129-155 (305)
90 COG0106 HisA Phosphoribosylfor 29.1 53 0.0012 24.7 2.5 19 26-44 88-106 (241)
91 TIGR01917 gly_red_sel_B glycin 29.0 86 0.0019 25.6 3.8 28 17-44 318-345 (431)
92 cd01028 TOPRIM_TopoIA TOPRIM_T 29.0 62 0.0013 21.2 2.5 17 27-44 83-99 (142)
93 cd03415 CbiX_CbiC Archaeal sir 28.8 24 0.00053 23.4 0.6 34 15-52 37-70 (125)
94 PRK11414 colanic acid/biofilm 28.7 80 0.0017 21.7 3.2 22 10-31 190-211 (221)
95 PF05470 eIF-3c_N: Eukaryotic 28.6 66 0.0014 26.9 3.1 29 8-36 507-540 (595)
96 COG1270 CbiB Cobalamin biosynt 28.4 44 0.00095 26.0 2.0 22 5-26 106-127 (320)
97 PF09543 DUF2379: Protein of u 28.3 69 0.0015 22.0 2.7 18 12-29 85-102 (121)
98 COG2313 IndA Uncharacterized e 27.6 99 0.0021 24.2 3.7 46 25-70 171-217 (310)
99 cd01821 Rhamnogalacturan_acety 27.1 1.9E+02 0.0041 19.1 4.9 27 16-42 88-114 (198)
100 PF13439 Glyco_transf_4: Glyco 27.1 1.3E+02 0.0027 18.4 3.6 34 16-50 10-43 (177)
101 PF08972 DUF1902: Domain of un 26.7 61 0.0013 19.3 2.0 19 34-52 9-28 (54)
102 PF10607 CLTH: CTLH/CRA C-term 26.6 86 0.0019 20.0 2.9 25 11-35 11-35 (145)
103 PHA00673 acetyltransferase dom 26.3 1.1E+02 0.0023 21.3 3.4 25 20-44 103-127 (154)
104 TIGR01918 various_sel_PB selen 26.2 1E+02 0.0022 25.2 3.7 28 17-44 318-345 (431)
105 PF13579 Glyco_trans_4_4: Glyc 25.7 1.3E+02 0.0028 17.9 3.4 24 19-42 2-25 (160)
106 PRK03732 hypothetical protein; 25.5 2E+02 0.0044 19.1 4.6 37 5-41 42-86 (114)
107 PRK15054 nitrate reductase 2 s 25.5 57 0.0012 24.3 2.0 38 12-52 72-109 (231)
108 cd00951 KDGDH 5-dehydro-4-deox 25.1 1.5E+02 0.0032 21.7 4.2 20 10-29 218-237 (289)
109 COG0011 Uncharacterized conser 25.0 1.2E+02 0.0025 20.0 3.2 27 14-40 47-73 (100)
110 PRK09485 mmuM homocysteine met 24.7 1.1E+02 0.0025 22.7 3.6 27 16-42 134-160 (304)
111 TIGR02795 tol_pal_ybgF tol-pal 24.6 1.5E+02 0.0033 17.0 3.6 24 6-29 7-30 (119)
112 cd07576 R-amidase_like Pseudom 24.5 1.2E+02 0.0026 20.8 3.5 36 13-48 10-45 (254)
113 COG1416 Uncharacterized conser 24.3 78 0.0017 21.3 2.4 31 7-42 42-72 (112)
114 PF13527 Acetyltransf_9: Acety 24.1 1.2E+02 0.0025 18.3 3.0 27 19-45 89-115 (127)
115 PRK15331 chaperone protein Sic 24.1 90 0.002 22.1 2.8 23 5-27 36-63 (165)
116 cd06348 PBP1_ABC_ligand_bindin 24.0 81 0.0018 22.5 2.6 22 24-45 181-202 (344)
117 cd07585 nitrilase_7 Uncharacte 23.8 1.4E+02 0.003 20.8 3.6 33 12-44 9-41 (261)
118 PF09577 Spore_YpjB: Sporulati 23.7 1.4E+02 0.0031 22.1 3.8 28 10-37 14-41 (232)
119 PRK13586 1-(5-phosphoribosyl)- 23.7 75 0.0016 23.0 2.3 19 26-44 86-104 (232)
120 PF00977 His_biosynth: Histidi 23.4 77 0.0017 22.5 2.4 18 27-44 87-104 (229)
121 smart00668 CTLH C-terminal to 23.4 1.1E+02 0.0024 16.3 2.6 26 10-35 10-35 (58)
122 TIGR00684 narJ nitrate reducta 23.3 84 0.0018 21.6 2.4 38 12-52 69-106 (152)
123 PLN02489 homocysteine S-methyl 23.3 1.3E+02 0.0027 23.0 3.6 27 16-42 161-187 (335)
124 TIGR00029 S20 ribosomal protei 23.1 1.5E+02 0.0032 18.8 3.4 24 10-33 37-60 (87)
125 PF09613 HrpB1_HrpK: Bacterial 23.1 1.1E+02 0.0023 21.6 3.0 27 2-28 45-71 (160)
126 COG1802 GntR Transcriptional r 23.1 1.5E+02 0.0032 20.6 3.7 25 9-33 192-216 (230)
127 PF04190 DUF410: Protein of un 23.0 1.2E+02 0.0025 22.2 3.3 23 12-34 1-23 (260)
128 PRK12856 hypothetical protein; 22.9 2.3E+02 0.0049 18.5 4.6 37 5-41 35-79 (103)
129 TIGR00007 phosphoribosylformim 22.9 80 0.0017 21.9 2.3 18 26-43 85-102 (230)
130 PF03514 GRAS: GRAS domain fam 22.8 1.2E+02 0.0025 23.5 3.4 29 1-29 1-29 (374)
131 PRK07630 CobD/CbiB family prot 22.8 1.3E+02 0.0028 22.7 3.6 17 10-26 103-119 (312)
132 PF00515 TPR_1: Tetratricopept 22.6 1.1E+02 0.0023 14.5 3.2 22 8-29 8-29 (34)
133 cd03416 CbiX_SirB_N Sirohydroc 22.6 80 0.0017 19.0 2.0 32 17-52 39-70 (101)
134 PRK12855 hypothetical protein; 22.5 2.3E+02 0.005 18.5 4.5 37 5-41 35-79 (103)
135 PRK02269 ribose-phosphate pyro 22.3 85 0.0018 23.8 2.5 24 22-45 231-254 (320)
136 PRK00239 rpsT 30S ribosomal pr 22.2 1.7E+02 0.0037 18.5 3.6 24 10-33 37-60 (88)
137 COG0462 PrsA Phosphoribosylpyr 22.1 85 0.0018 24.5 2.5 21 24-44 230-250 (314)
138 PF03863 Phage_mat-A: Phage ma 22.0 1E+02 0.0022 25.0 2.9 23 5-27 159-181 (400)
139 cd07583 nitrilase_5 Uncharacte 22.0 2.7E+02 0.0058 19.2 4.8 57 14-70 11-72 (253)
140 cd07586 nitrilase_8 Uncharacte 21.9 1.6E+02 0.0034 20.6 3.6 38 12-49 9-46 (269)
141 KOG1579 Homocysteine S-methylt 21.7 1.4E+02 0.0031 23.4 3.6 29 14-42 140-168 (317)
142 cd04723 HisA_HisF Phosphoribos 21.6 86 0.0019 22.3 2.3 19 26-44 91-109 (233)
143 cd08162 MPP_PhoA_N Synechococc 21.6 1.2E+02 0.0026 22.7 3.2 20 22-41 194-213 (313)
144 COG1433 Uncharacterized conser 21.5 92 0.002 20.9 2.3 14 27-40 57-70 (121)
145 PF13606 Ank_3: Ankyrin repeat 21.2 72 0.0016 15.8 1.4 13 26-38 16-28 (30)
146 TIGR01575 rimI ribosomal-prote 21.1 1.7E+02 0.0036 17.2 3.2 27 19-45 71-97 (131)
147 cd03363 TOPRIM_TopoIA_TopoI TO 20.9 94 0.002 20.2 2.2 17 27-44 65-81 (123)
148 KOG2300 Uncharacterized conser 20.9 1.2E+02 0.0026 25.9 3.2 27 5-31 449-475 (629)
149 TIGR01919 hisA-trpF 1-(5-phosp 20.8 90 0.0019 22.7 2.3 19 26-44 87-105 (243)
150 TIGR01716 RGG_Cterm transcript 20.8 1.4E+02 0.0031 20.2 3.2 32 5-36 172-203 (220)
151 PF05991 NYN_YacP: YacP-like N 20.7 2E+02 0.0043 19.6 3.9 32 9-40 15-48 (166)
152 cd00189 TPR Tetratricopeptide 20.7 1.4E+02 0.003 15.1 2.8 22 8-29 7-28 (100)
153 cd07409 MPP_CD73_N CD73 ecto-5 20.6 93 0.002 22.6 2.3 23 20-42 167-189 (281)
154 PF13371 TPR_9: Tetratricopept 20.5 1.6E+02 0.0035 16.0 3.1 22 8-29 36-57 (73)
155 COG2822 Predicted periplasmic 20.5 54 0.0012 26.2 1.1 23 10-32 160-182 (376)
156 cd00331 IGPS Indole-3-glycerol 20.4 1.1E+02 0.0023 21.2 2.5 22 27-48 86-107 (217)
157 PRK13587 1-(5-phosphoribosyl)- 20.4 96 0.0021 22.3 2.3 19 26-44 89-107 (234)
158 PRK07534 methionine synthase I 20.3 1.6E+02 0.0035 22.5 3.6 27 16-42 125-151 (336)
159 PRK11041 DNA-binding transcrip 20.3 1.2E+02 0.0026 21.0 2.8 23 25-47 81-103 (309)
160 cd06368 PBP1_iGluR_non_NMDA_li 20.2 1.1E+02 0.0023 21.5 2.6 23 23-45 168-190 (324)
161 PRK03620 5-dehydro-4-deoxygluc 20.1 2.1E+02 0.0045 21.1 4.2 18 10-27 225-242 (303)
No 1
>PRK10200 putative racemase; Provisional
Probab=99.58 E-value=4.5e-15 Score=106.62 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=61.1
Q ss_pred hhhHHHH-HhhcCCh-HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHHHHHhc
Q 036617 4 TLIPALD-ALNRKDV-EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVCSQMGE 74 (75)
Q Consensus 4 ~vm~aIy-avKag~~-~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLara~i~~ 74 (75)
.||..|| .+|+|++ +..++.+...++.|..+|+|.+||||||+|++++. +.++ .+|||++.||+++++.
T Consensus 156 ~v~~~i~~~l~~G~~~~~~~~~l~~~l~~l~~~g~d~vILGCTelpll~~~~~~~~--~~iD~~~~la~~~v~~ 227 (230)
T PRK10200 156 KINQIIFEELCLGQFTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEERSVL--PVFDTAAIHAEDAVAF 227 (230)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCCEEEECCcCHHHhCCcccCCC--CeEchHHHHHHHHHHH
Confidence 4999999 5999997 67789999999999999999999999999999987 4333 5899999999999864
No 2
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=7.8e-15 Score=108.02 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=64.3
Q ss_pred hhhHHHHH-hhcCChH-HHHHHHHHHHHHHHHhhhceeeeeccCcccCCCCCCCcccccCchHHHHHHHHHh
Q 036617 4 TLIPALDA-LNRKDVE-GVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCSQMG 73 (75)
Q Consensus 4 ~vm~aIya-vKag~~~-~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~~~~~~~~~iD~tdaLara~i~ 73 (75)
.||+-||. +|+|++. ..+.++..++..|.+||++.|||||||||+.|.+ ..++..++|||..+|+++|+
T Consensus 155 ~v~~iIy~El~~G~~~~~sr~~~~~ii~~l~~~Gae~vIlGCTEi~lll~~-~d~~vP~~Dtt~iha~aav~ 225 (230)
T COG1794 155 EVNRIIYEELCQGIVKDASRELYLAVIERLAERGAEGVILGCTEIPLLLSQ-DDSSVPVFDTTAIHAEAAVE 225 (230)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHcCCCEEEEeccchheeecC-CcccCcccccHHHHHHHHHH
Confidence 39999999 9999987 7999999999999999999999999999999999 33778899999999999985
No 3
>TIGR00035 asp_race aspartate racemase.
Probab=99.56 E-value=1e-14 Score=103.50 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=62.9
Q ss_pred hhhHHHH-HhhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCCCCCcccccCchHHHHHHHHHhc
Q 036617 4 TLIPALD-ALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCSQMGE 74 (75)
Q Consensus 4 ~vm~aIy-avKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~~~~~~~~~iD~tdaLara~i~~ 74 (75)
.|+.+|| .+|+|+.+.+.+.++..++.|..+|+|.+||||||+|++++. ...+..+|||++.+|+++++.
T Consensus 155 ~i~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~gad~iILgCTelpll~~~-~~~~~pviD~~~~~a~~~v~~ 225 (229)
T TIGR00035 155 AIMSGIYDEVKAGNIELGRELLLKIAKELEERGAEGIILGCTELSLILKA-DDLDVPLIDPMDVIAEAAVKL 225 (229)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEEeCcchHhhccc-ccCCCCeEchHHHHHHHHHHH
Confidence 3888999 499999999999999999999999999999999999999985 334678999999999999863
No 4
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=99.19 E-value=1.6e-11 Score=89.35 Aligned_cols=69 Identities=13% Similarity=0.011 Sum_probs=59.5
Q ss_pred hhHHHHHhhcCCh--HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCC--cccccCchHHHHHHHHHh
Q 036617 5 LIPALDALNRKDV--EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDP--LLNKCIDPMDALVCSQMG 73 (75)
Q Consensus 5 vm~aIyavKag~~--~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~--~~~~~iD~tdaLara~i~ 73 (75)
++.-++.+|+|+. +.+.+.+...++.|..+|+|.+||||||+|++.+. .+- .+-.+|||++++||++++
T Consensus 140 ~~~lv~~Ie~g~~~~~~~~~~l~~~l~~l~~~~~d~lILGCTh~P~l~~~i~~~~~~~v~~IDp~~~la~~~~~ 213 (251)
T TIGR00067 140 CPELVPLAEAGLLGEDYALECLKRYLRPLLDTLPDTVVLGCTHFPLLKEEIEQYLPEHVRLVDSGVHTARRTAW 213 (251)
T ss_pred CHHHHHHHHcCCcCCHHHHHHHHHHHHHHhcCCCCEEEECcCChHHHHHHHHHHcCCCcEEECCHHHHHHHHHH
Confidence 5666889999998 66999999999999999999999999999999976 332 334799999999999875
No 5
>PRK00865 glutamate racemase; Provisional
Probab=98.83 E-value=1.4e-09 Score=79.06 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=51.9
Q ss_pred hhcCC--hHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CC--CcccccCchHHHHHHHHHh
Q 036617 12 LNRKD--VEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DD--PLLNKCIDPMDALVCSQMG 73 (75)
Q Consensus 12 vKag~--~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~--~~~~~~iD~tdaLara~i~ 73 (75)
+++|. .+.+.+.+...++.|..+|+|.|||||||+|++.+. .. +..-..|||++++||.++.
T Consensus 152 ie~g~~~~~~~~~~l~~~l~~l~~~g~d~iILGCTh~p~l~~~i~~~~~~~v~vIDp~~~~a~~~~~ 218 (261)
T PRK00865 152 VEAGILGGPVTLEVLREYLAPLLAAGIDTLVLGCTHYPLLKPEIQQVLGEGVTLIDSGEAIARRVAR 218 (261)
T ss_pred HhCCCcCCHHHHHHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHHHcCCCCEEECCHHHHHHHHHH
Confidence 66664 467889999999999989999999999999998876 33 2235899999999999865
No 6
>PRK07475 hypothetical protein; Provisional
Probab=98.67 E-value=1.5e-08 Score=73.53 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=56.2
Q ss_pred hhhHHHHH-hhcCChHHHHHHHHHHHHHHHHh--hhceeeeeccCcccCCCC-CCCcccccCchHHHHHH
Q 036617 4 TLIPALDA-LNRKDVEGVINLLRRALQVLLAR--AVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVC 69 (75)
Q Consensus 4 ~vm~aIya-vKag~~~~a~~ll~~~~~~L~~r--g~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLar 69 (75)
.||..||. .|.+|.+++.+.+..+++.|.++ |++.|||+|||+|.+.+. ........+|++.++..
T Consensus 162 ~~~~~I~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~daIvL~CTeLp~~~~~le~~~glPViDs~t~~~w 231 (245)
T PRK07475 162 EFRRNILENRGELDNEAAEQEVVAAARALLERHPDIGAIVLECTNMPPYAAAIQRATGLPVFDIVTLINW 231 (245)
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHHhhCCCCCEEEEcCcChHHHHHHHHHhcCCCEEeHHHHHHH
Confidence 38889984 78889999999999999999854 999999999999998866 44467789999988764
No 7
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=98.28 E-value=1.7e-07 Score=63.96 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=51.4
Q ss_pred hhHHHHHhh-cCChHHH-HHHHHHHHHHHH-HhhhceeeeeccCcccCCCC----CCCcccccCchHHHHHHHHH
Q 036617 5 LIPALDALN-RKDVEGV-INLLRRALQVLL-ARAVNIVILASNDTLDLLPP----DDPLLNKCIDPMDALVCSQM 72 (75)
Q Consensus 5 vm~aIyavK-ag~~~~a-~~ll~~~~~~L~-~rg~~~vILaCTEiPl~L~~----~~~~~~~~iD~tdaLara~i 72 (75)
++.+||.++ .|+.... ...+...++.|. ..|+|.||||||++|.+++. ........|||.++++++++
T Consensus 142 i~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~~~~~l~~~~gipVid~~~~~~~~~l 216 (216)
T PF01177_consen 142 IHNAIYDVIELGDIPPEQIEILAEAARELIKEDGADAIILGCTHLPLLLGAIEALEEELGIPVIDSNQAAAWAAL 216 (216)
T ss_dssp EEEEHTHHHHTTCTTHHHHHHHHHHHHHHHHCTTSSEEEEESTTGGGGHHHHHHHHHTCSSEEEEHHHHHHHHHH
T ss_pred HHhhcHHHHhhhcCCHHHHHHHHHHHHHHhccCCCCEEEECCCchHHHHHHHHhhcccCCCEEEccHHHHHHHhC
Confidence 345565533 7777665 677777777775 88999999999999977533 33446789999999999874
No 8
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=95.66 E-value=0.0057 Score=46.24 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCC--cccccCchHHHHHHHHHh
Q 036617 18 EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDP--LLNKCIDPMDALVCSQMG 73 (75)
Q Consensus 18 ~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~--~~~~~iD~tdaLara~i~ 73 (75)
+.+.+.++..+.-+...|.|.+|||||=-|++=+. .+- .....|||-.+-||...+
T Consensus 160 ~~~~~~l~~~l~~~~~~~~DtlVLGCTHyPll~~~i~~~~~~~v~lids~~~~a~~~~~ 218 (269)
T COG0796 160 PVALEVLKEYLPPLQEAGPDTLVLGCTHYPLLKPEIQQVLGEHVALIDSGAETARRLAR 218 (269)
T ss_pred HHHHHHHHHHhcchhccCCCEEEEeCcCcHHHHHHHHHHhCCCceEeCCHHHHHHHHHH
Confidence 34667778888888888999999999999987665 333 347899999999988765
No 9
>TIGR00035 asp_race aspartate racemase.
Probab=91.41 E-value=0.27 Score=34.87 Aligned_cols=60 Identities=8% Similarity=0.058 Sum_probs=45.9
Q ss_pred hhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHHHH
Q 036617 12 LNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVCSQ 71 (75)
Q Consensus 12 vKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLara~ 71 (75)
+.+|+-+.-.+.+...++.|...|++.++++|.=...+++. ....+..+|...++.+++.
T Consensus 52 ~~~~~~~~~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iPii~i~~~~~~~~ 112 (229)
T TIGR00035 52 ILGRGEDRPRPILIDIAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMIEETAEAV 112 (229)
T ss_pred HhcCCcchHHHHHHHHHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCCEechHHHHHHHH
Confidence 45577788899999999999999999999999876666655 4444566777666665543
No 10
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=90.18 E-value=0.66 Score=30.02 Aligned_cols=29 Identities=28% Similarity=0.240 Sum_probs=25.8
Q ss_pred hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617 5 LIPALDALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~~~~L~~ 33 (75)
+|.|+.+.|.||+++|.++|...-+.|..
T Consensus 19 ~~eAl~~a~~g~fe~A~~~l~ea~~~l~~ 47 (97)
T cd00215 19 ALEALKAAKEGDFAEAEELLEEANDSLNE 47 (97)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999988776653
No 11
>PRK10200 putative racemase; Provisional
Probab=90.09 E-value=0.61 Score=33.55 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=44.6
Q ss_pred hHHHHH-hhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHH
Q 036617 6 IPALDA-LNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMD 65 (75)
Q Consensus 6 m~aIya-vKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~td 65 (75)
+|-..+ +.+|+-+...+.|.+.++.|...||+.++++|.=.--+++. .+..+..+|+=.+
T Consensus 45 ~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iPii~ii~ 106 (230)
T PRK10200 45 FHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIAD 106 (230)
T ss_pred hHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCCEeehHH
Confidence 444444 67788899999999999999999999999999866666554 3334445555444
No 12
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=90.00 E-value=0.69 Score=30.03 Aligned_cols=29 Identities=24% Similarity=0.176 Sum_probs=25.6
Q ss_pred hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617 5 LIPALDALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~~~~L~~ 33 (75)
+|.|+.+.|.||+++|.++|...-+.|..
T Consensus 21 ~~eAl~~a~~gdfe~A~~~l~eA~~~l~~ 49 (99)
T TIGR00823 21 ALEALKAAKAGDFAKARALVEQAGMCLNE 49 (99)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999988776643
No 13
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=89.22 E-value=0.85 Score=29.90 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=25.5
Q ss_pred hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617 5 LIPALDALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~~~~L~~ 33 (75)
++.|+.+.|.||+++|.++|...-+.|..
T Consensus 24 ~~eAl~~ak~gdf~~A~~~l~eA~~~l~~ 52 (104)
T PRK09591 24 VHEAFAAMREGNFDLAEQKLNQSNEELLE 52 (104)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999988776543
No 14
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=88.92 E-value=0.38 Score=36.02 Aligned_cols=57 Identities=21% Similarity=0.123 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHH-HHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHHHH
Q 036617 15 KDVEGVINLLRRALQ-VLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVCSQ 71 (75)
Q Consensus 15 g~~~~a~~ll~~~~~-~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLara~ 71 (75)
|+-++++.++..-++ .+..-|+|+|||||+=+--+-+. ...+.-..||++-+.++-.
T Consensus 153 ~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~gvPVIDgv~Aav~~a 211 (230)
T COG4126 153 GPPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDLADQLQKAFGVPVIDGVAAAVKLA 211 (230)
T ss_pred CChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHHHHHHHHHHHhCCCcccchHHHHHHH
Confidence 356777777665554 55566999999999988777555 6777788899998887654
No 15
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=88.83 E-value=0.99 Score=29.03 Aligned_cols=29 Identities=34% Similarity=0.361 Sum_probs=25.0
Q ss_pred hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617 5 LIPALDALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~~~~L~~ 33 (75)
+|.|+.+.|.||+++|.+++...-+.|..
T Consensus 18 ~~eAl~~a~~~~fe~A~~~l~~a~~~l~~ 46 (96)
T PF02255_consen 18 AMEALKAAREGDFEEAEELLKEADEELLK 46 (96)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999988777654
No 16
>PRK10481 hypothetical protein; Provisional
Probab=88.29 E-value=0.69 Score=33.98 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhhhceeeeeccCc-ccCCC
Q 036617 18 EGVINLLRRALQVLLARAVNIVILASNDT-LDLLP 51 (75)
Q Consensus 18 ~~a~~ll~~~~~~L~~rg~~~vILaCTEi-Pl~L~ 51 (75)
+.-.+.++.+++.|.+.|++.++|+||-- |-.-.
T Consensus 73 ~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a 107 (224)
T PRK10481 73 QKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTA 107 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccc
Confidence 34567899999999999999999999976 76333
No 17
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=88.14 E-value=1.1 Score=30.09 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=25.6
Q ss_pred hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617 5 LIPALDALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~~~~L~~ 33 (75)
+|.|+.+.|.||+++|.+++...-+.|..
T Consensus 35 ~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~ 63 (115)
T PRK10454 35 AYAALKQAKQGDFAAAKAMMDQSRMALNE 63 (115)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999988776643
No 18
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=86.59 E-value=0.54 Score=35.13 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=43.6
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHH
Q 036617 10 DALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVC 69 (75)
Q Consensus 10 yavKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLar 69 (75)
++-++|+.+++.+.|...+..|.+-|+|.+++.|.=+-..-.+ .....-.+|+-.|+=++
T Consensus 50 ~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~ 110 (230)
T COG1794 50 TLQRAGEWDEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAK 110 (230)
T ss_pred HHHccCccccHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHH
Confidence 5689999999999999999999999999999999755444433 33333334444444333
No 19
>PRK10481 hypothetical protein; Provisional
Probab=85.83 E-value=0.47 Score=34.86 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhhceeeeeccCcccCCC-C-CCCcccccCchHHHHHHHHH
Q 036617 22 NLLRRALQVLLARAVNIVILASNDTLDLLP-P-DDPLLNKCIDPMDALVCSQM 72 (75)
Q Consensus 22 ~ll~~~~~~L~~rg~~~vILaCTEiPl~L~-~-~~~~~~~~iD~tdaLara~i 72 (75)
.-+..+.+.|...|+|.|+++||=+.-... . ...+....|||-.+.||-+-
T Consensus 169 ~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~ar~~~ 221 (224)
T PRK10481 169 EELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLVARLAA 221 (224)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHHHHHHH
Confidence 356778899999999999999998885333 2 66778889999999997653
No 20
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=80.08 E-value=4.1 Score=27.18 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=25.4
Q ss_pred hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617 5 LIPALDALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~~~~L~~ 33 (75)
++.|+.+.|.|++++|..++...-+.|..
T Consensus 23 ~~eAl~~Ak~g~f~~A~~~i~eA~~~l~e 51 (105)
T COG1447 23 AYEALKAAKEGDFEEAEELIQEANDALNE 51 (105)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999988776653
No 21
>PRK07475 hypothetical protein; Provisional
Probab=79.60 E-value=3 Score=30.24 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=32.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHhhhceeeeecc
Q 036617 9 LDALNRKDVEGVINLLRRALQVLLARAVNIVILASN 44 (75)
Q Consensus 9 IyavKag~~~~a~~ll~~~~~~L~~rg~~~vILaCT 44 (75)
...+.+|+-+...+.|.+.++.|...|++.++++|.
T Consensus 52 ~~~~~~~~~~~~~~~l~~aa~~L~~~G~d~I~~~Cg 87 (245)
T PRK07475 52 PERVVEGDDPSLLDAFVAAARELEAEGVRAITTSCG 87 (245)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHcCCCEEEechH
Confidence 356788888889999999999999999999999995
No 22
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=78.38 E-value=3.3 Score=30.55 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC
Q 036617 19 GVINLLRRALQVLLARAVNIVILASNDTLDLLPP 52 (75)
Q Consensus 19 ~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~ 52 (75)
.-.+.|+.+++.|.+.|++.++|-||----.|..
T Consensus 71 ~v~~~lq~~i~~le~~G~d~illlCTG~F~~l~~ 104 (221)
T PF07302_consen 71 KVEPRLQACIAQLEAQGYDVILLLCTGEFPGLTA 104 (221)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCC
Confidence 4457789999999999999999999954336655
No 23
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.33 E-value=7.4 Score=19.19 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=19.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617 8 ALDALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 8 aIyavKag~~~~a~~ll~~~~~~L~~ 33 (75)
|.+-...|+.++|.++++.++.....
T Consensus 9 a~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 9 ANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 44557889999999999998877655
No 24
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.23 E-value=4.7 Score=22.59 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=16.0
Q ss_pred hhcCChHHHHHHHHHHHH
Q 036617 12 LNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 12 vKag~~~~a~~ll~~~~~ 29 (75)
++.||.++|+++|.+++.
T Consensus 10 ie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 10 IEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHcCChHHHHHHHHHHHH
Confidence 789999999999998773
No 25
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=72.14 E-value=6.4 Score=28.68 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=35.5
Q ss_pred cCChHHHHHHHHHHHHHHH-HhhhceeeeeccCcc-cCCCC-CCCcccccCchH
Q 036617 14 RKDVEGVINLLRRALQVLL-ARAVNIVILASNDTL-DLLPP-DDPLLNKCIDPM 64 (75)
Q Consensus 14 ag~~~~a~~ll~~~~~~L~-~rg~~~vILaCTEiP-l~L~~-~~~~~~~~iD~t 64 (75)
...-++-.+.+...++.|. ..|++.+|++|.=.- .+++. .....-.+|..+
T Consensus 39 ~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~a~~~~~l~~~~~iPii~ii 92 (251)
T TIGR00067 39 EKSPEFILEYVLELLTFLKERHNIKLLVVACNTASALALEDLQRNFDFPVVGVI 92 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHHCCCCEEeec
Confidence 3456788899999999999 999999999998555 23444 222333444433
No 26
>PRK00865 glutamate racemase; Provisional
Probab=72.09 E-value=3.3 Score=30.15 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHHHHHHhhhceeeeeccCcc-cCCCC-CCCcccccCchHHHHHHHH
Q 036617 15 KDVEGVINLLRRALQVLLARAVNIVILASNDTL-DLLPP-DDPLLNKCIDPMDALVCSQ 71 (75)
Q Consensus 15 g~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiP-l~L~~-~~~~~~~~iD~tdaLara~ 71 (75)
..-++-.+.+.+.++.|...|++.+|++|.=.+ .+++. ........|. ++.-++.+
T Consensus 47 ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l~~lr~~~~iPvig-i~~a~~~a 104 (261)
T PRK00865 47 KSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAVALPDLRERYDIPVVG-IVPAIKPA 104 (261)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHhCCCCEEe-eHHHHHHH
Confidence 446777888999999999999999999998766 35544 3333344555 44444433
No 27
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=72.02 E-value=4.4 Score=31.38 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.8
Q ss_pred hhHHHHH-hhcCChHHHHHHHHHHH
Q 036617 5 LIPALDA-LNRKDVEGVINLLRRAL 28 (75)
Q Consensus 5 vm~aIya-vKag~~~~a~~ll~~~~ 28 (75)
+-.+|.+ ||+||+++|.+|+.++-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe 284 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAE 284 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5578877 99999999999999864
No 28
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=67.69 E-value=7.1 Score=26.36 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-C-CCcccccCchHHHHHHH
Q 036617 20 VINLLRRALQVLLARAVNIVILASNDTLDLLPP-D-DPLLNKCIDPMDALVCS 70 (75)
Q Consensus 20 a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~-~~~~~~~iD~tdaLara 70 (75)
..+.+...++.|...|+|.++++|+=.-.++.. . .......+...++..++
T Consensus 50 ~~~~~~~~~~~l~~~g~d~i~i~C~s~~~~~~~~~~~~~~iPv~~~~~a~~~~ 102 (216)
T PF01177_consen 50 ILDRLIEAAEKLEKAGVDAIVIACNSAHPFVDELRKERVGIPVVGIVEAALEA 102 (216)
T ss_dssp HHHHHHHHHHHHHHTTESEEEESSHHHHHHHHHHHHHHHSSEEEESHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCchhhhHHHHhhhcCceEEEeccHHHHHH
Confidence 455788888999999999999999977233333 3 22344456655555444
No 29
>PF12854 PPR_1: PPR repeat
Probab=67.01 E-value=5.5 Score=20.45 Aligned_cols=15 Identities=13% Similarity=0.239 Sum_probs=13.4
Q ss_pred hhcCChHHHHHHHHH
Q 036617 12 LNRKDVEGVINLLRR 26 (75)
Q Consensus 12 vKag~~~~a~~ll~~ 26 (75)
-|.|++++|.++|.+
T Consensus 18 Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 18 CKAGRVDEAFELFDE 32 (34)
T ss_pred HHCCCHHHHHHHHHh
Confidence 689999999999874
No 30
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=65.17 E-value=14 Score=17.56 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=13.4
Q ss_pred hhcCChHHHHHHHHHH
Q 036617 12 LNRKDVEGVINLLRRA 27 (75)
Q Consensus 12 vKag~~~~a~~ll~~~ 27 (75)
.|+|+.+.|..++..-
T Consensus 12 ~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 12 AKAGDPDAALQLFDEM 27 (34)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7899999998887653
No 31
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=63.18 E-value=13 Score=17.52 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=18.0
Q ss_pred HHHHhhcCChHHHHHHHHHHHHH
Q 036617 8 ALDALNRKDVEGVINLLRRALQV 30 (75)
Q Consensus 8 aIyavKag~~~~a~~ll~~~~~~ 30 (75)
|.-..+.|+.++|.+.++.+++.
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 33346789999999999987764
No 32
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=61.88 E-value=13 Score=20.40 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=15.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHH
Q 036617 7 PALDALNRKDVEGVINLLRRAL 28 (75)
Q Consensus 7 ~aIyavKag~~~~a~~ll~~~~ 28 (75)
.|...+++|+.++|.+.++.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l 24 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQAL 24 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3555678888888888777655
No 33
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=61.28 E-value=9.9 Score=20.84 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=14.8
Q ss_pred HhhcCChHHHHHHHHHHHHH
Q 036617 11 ALNRKDVEGVINLLRRALQV 30 (75)
Q Consensus 11 avKag~~~~a~~ll~~~~~~ 30 (75)
+++.|+.++|.++++.+++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~ 20 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR 20 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHH
Confidence 36788888888888776654
No 34
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=58.49 E-value=14 Score=23.37 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=25.4
Q ss_pred cCChHHHHHHHHHHHHHHHHhhhceeee
Q 036617 14 RKDVEGVINLLRRALQVLLARAVNIVIL 41 (75)
Q Consensus 14 ag~~~~a~~ll~~~~~~L~~rg~~~vIL 41 (75)
-|++++-.++++.+-+.+..+|+++++.
T Consensus 43 EGe~dev~~~i~~~~e~~~~~G~~Rv~t 70 (92)
T PF01910_consen 43 EGELDEVMALIKEAHEALFEAGAKRVVT 70 (92)
T ss_dssp EEEHHHHHHHHHHHHHHHHCTTSSEEEE
T ss_pred EecHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 3789999999999999999999999874
No 35
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=57.62 E-value=20 Score=27.18 Aligned_cols=33 Identities=12% Similarity=0.352 Sum_probs=29.3
Q ss_pred hhcCChHHHHHHHHHHHHHH---HHhhhceeeeecc
Q 036617 12 LNRKDVEGVINLLRRALQVL---LARAVNIVILASN 44 (75)
Q Consensus 12 vKag~~~~a~~ll~~~~~~L---~~rg~~~vILaCT 44 (75)
+..|+.+.++.+.+..++.+ ...|++.||..|.
T Consensus 213 ~~~G~~~~~~~~a~~n~~~~~~~~~~g~~~Vvt~c~ 248 (407)
T PRK11274 213 YHLNAQEGGLARMRRNIDAWWPAIEAGAEAIVMTAS 248 (407)
T ss_pred HhCCCHHHHHHHHHHHHHHhhhhhhcCCCEEEECCc
Confidence 67899999999999999887 6779999999887
No 36
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=56.49 E-value=16 Score=17.52 Aligned_cols=21 Identities=33% Similarity=0.302 Sum_probs=16.5
Q ss_pred hhHHHHHhhcCChHHHHHHHH
Q 036617 5 LIPALDALNRKDVEGVINLLR 25 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~ 25 (75)
+.-+...+..||.++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344556689999999999876
No 37
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=55.83 E-value=11 Score=23.45 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhhceeeeeccCccc---CCCC-CCCcccccCchHHHHHHH
Q 036617 24 LRRALQVLLARAVNIVILASNDTLD---LLPP-DDPLLNKCIDPMDALVCS 70 (75)
Q Consensus 24 l~~~~~~L~~rg~~~vILaCTEiPl---~L~~-~~~~~~~~iD~tdaLara 70 (75)
|+.....|.+.|++.|+.+|-...- +... .-|.+ .++||..+|=++
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~-ly~D~~~~lY~~ 51 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFP-LYVDPERKLYKA 51 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCc-EEEeCcHHHHHH
Confidence 4556788889999999999987622 2222 45667 899998777554
No 38
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=54.70 E-value=23 Score=16.73 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=18.5
Q ss_pred hHHHHHhhcCChHHHHHHHHHHHH
Q 036617 6 IPALDALNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 6 m~aIyavKag~~~~a~~ll~~~~~ 29 (75)
.-|....+.|+.++|.+.++.+++
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345556899999999999998775
No 39
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=54.39 E-value=6.7 Score=28.68 Aligned_cols=50 Identities=6% Similarity=0.010 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhceeeeeccCcccC--CCC-CCCcccccCchHHHHHHHHHhc
Q 036617 25 RRALQVLLARAVNIVILASNDTLDL--LPP-DDPLLNKCIDPMDALVCSQMGE 74 (75)
Q Consensus 25 ~~~~~~L~~rg~~~vILaCTEiPl~--L~~-~~~~~~~~iD~tdaLara~i~~ 74 (75)
...+..+...++|.|++.||-++-+ ++. ...+.+..++|-.+++..+.+.
T Consensus 171 ~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNqat~W~~Lr~ 223 (239)
T TIGR02990 171 VEAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQATAWRCLRL 223 (239)
T ss_pred HHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHHHHHHHHHHH
Confidence 3344445567999999999999854 355 5678888999999999988763
No 40
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=52.94 E-value=21 Score=27.97 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=44.8
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCCCCC-cccccCchHHHHHH
Q 036617 10 DALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDP-LLNKCIDPMDALVC 69 (75)
Q Consensus 10 yavKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~~~~-~~~~~iD~tdaLar 69 (75)
..+..|+.+.+..+.+..++.+...|++.||..|..=-..|...-+ ...+.+|-++-|++
T Consensus 305 p~~~~G~~~~~~~~~~~ni~~~~~~~~~~IVt~c~~C~~~l~~~y~~~~~~v~~i~e~L~~ 365 (486)
T PRK06259 305 PLIRTGQTDVAEELKKKNLEIFNKLDVDTVVTICAGCGSTLKNDYKEKEFNVMDITEVLVE 365 (486)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHhCCCCEEEECCchHHHHHHHhccccccceeeHHHHHHH
Confidence 3468899999999999999999999999999877654444433111 24567788877765
No 41
>PHA02608 67 prohead core protein; Provisional
Probab=51.13 E-value=24 Score=22.63 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=16.7
Q ss_pred HHHhhcCChHHHHHHHHHHH
Q 036617 9 LDALNRKDVEGVINLLRRAL 28 (75)
Q Consensus 9 IyavKag~~~~a~~ll~~~~ 28 (75)
|.|+|+||+=.|+..|....
T Consensus 5 IeAIKS~DLV~akK~F~~~M 24 (80)
T PHA02608 5 IEAIKSGDLVEAKKEFASIM 24 (80)
T ss_pred HHHHhcCcHHHHHHHHHHHH
Confidence 67889999999999887654
No 42
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=50.29 E-value=26 Score=27.74 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHHHHHHHHhhhceeeeecc
Q 036617 16 DVEGVINLLRRALQVLLARAVNIVILASN 44 (75)
Q Consensus 16 ~~~~a~~ll~~~~~~L~~rg~~~vILaCT 44 (75)
..+.+.+.-.+.++.|.+.|||.|||-||
T Consensus 321 ~~~~~~~~g~eIa~~Lk~dgVDAVILTST 349 (349)
T PF07355_consen 321 AVANAKRFGPEIAKELKEDGVDAVILTST 349 (349)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 35667778889999999999999999987
No 43
>PF13041 PPR_2: PPR repeat family
Probab=50.23 E-value=26 Score=18.60 Aligned_cols=17 Identities=12% Similarity=0.217 Sum_probs=14.5
Q ss_pred hhcCChHHHHHHHHHHH
Q 036617 12 LNRKDVEGVINLLRRAL 28 (75)
Q Consensus 12 vKag~~~~a~~ll~~~~ 28 (75)
.|+|++++|..++++..
T Consensus 14 ~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 14 CKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHCcCHHHHHHHHHHHH
Confidence 78999999999987544
No 44
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=49.66 E-value=25 Score=25.25 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhhhceeeeecc
Q 036617 19 GVINLLRRALQVLLARAVNIVILASN 44 (75)
Q Consensus 19 ~a~~ll~~~~~~L~~rg~~~vILaCT 44 (75)
-|..|.+.+++....+|++.|+|..+
T Consensus 101 Ig~aLvr~aId~m~~~g~~eVvLeTe 126 (165)
T KOG3139|consen 101 IGKALVRKAIDAMRSRGYSEVVLETE 126 (165)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEecc
Confidence 47889999999999999999999765
No 45
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=49.19 E-value=18 Score=26.72 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhhceeeeec
Q 036617 21 INLLRRALQVLLARAVNIVILAS 43 (75)
Q Consensus 21 ~~ll~~~~~~L~~rg~~~vILaC 43 (75)
..-|..+.+.|..+|+|.|+|-|
T Consensus 164 ~~~l~~Aa~~L~~~gadlIvLDC 186 (221)
T PF07302_consen 164 EEELAAAARELAEQGADLIVLDC 186 (221)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEC
Confidence 44578899999999999999999
No 46
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.62 E-value=33 Score=26.59 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=27.8
Q ss_pred hhHHHHHhhcCChHHHHHHHHHHHHHHHHhh
Q 036617 5 LIPALDALNRKDVEGVINLLRRALQVLLARA 35 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~~~~L~~rg 35 (75)
.|.+--.+|++|.++|.+.|...++....+|
T Consensus 77 YveA~~cykk~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 77 YVEAANCYKKVDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred HHHHHHHhhccChHHHHHHHHHHHHHHHhhh
Confidence 5677777999999999999999999998876
No 47
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=48.24 E-value=28 Score=20.40 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=15.8
Q ss_pred HHHhhcCChHHHHHHHHHHHH
Q 036617 9 LDALNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 9 IyavKag~~~~a~~ll~~~~~ 29 (75)
+.++++||.++|+..++.-++
T Consensus 104 ~~ai~~~d~~~a~~~~~~h~~ 124 (125)
T PF07729_consen 104 IDAIRAGDPEAAREALRQHIE 124 (125)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhc
Confidence 355899999999998886554
No 48
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.84 E-value=19 Score=26.83 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=18.5
Q ss_pred HHHHhhcCChHHHHHHHHHHHH
Q 036617 8 ALDALNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 8 aIyavKag~~~~a~~ll~~~~~ 29 (75)
+..++|+||+++|..+|..+.+
T Consensus 174 glAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc
Confidence 4567999999999999987664
No 49
>COG4914 Predicted nucleotidyltransferase [General function prediction only]
Probab=47.02 E-value=21 Score=26.00 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhhceeeeeccCcccCCCC
Q 036617 20 VINLLRRALQVLLARAVNIVILASNDTLDLLPP 52 (75)
Q Consensus 20 a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~ 52 (75)
.+.-++.++++|..+|+..+|.|+|=+|..|--
T Consensus 6 ~~~~v~~vl~~L~d~g~~FviIG~tvv~~~l~~ 38 (190)
T COG4914 6 YKTAVRKVLKSLNDKGVEFVIIGSTVVPFVLNI 38 (190)
T ss_pred hHHHHHHHHHHHHhcCeEEEEECCeEEEEEecc
Confidence 445678899999999999999999999988855
No 50
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=46.36 E-value=37 Score=21.69 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=25.3
Q ss_pred cCChHHHHHHHHHHHHHHHHhhhceeee
Q 036617 14 RKDVEGVINLLRRALQVLLARAVNIVIL 41 (75)
Q Consensus 14 ag~~~~a~~ll~~~~~~L~~rg~~~vIL 41 (75)
-|++++-.++++.+...+...|+++++.
T Consensus 45 EGe~dev~~~i~~~~e~~~~~G~~Rv~t 72 (97)
T TIGR00106 45 EGDLDELFEAIKAIHEAVLEKGSDRVYT 72 (97)
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 3889999999999999999999999874
No 51
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=46.08 E-value=32 Score=15.85 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=14.1
Q ss_pred hhcCChHHHHHHHHHH
Q 036617 12 LNRKDVEGVINLLRRA 27 (75)
Q Consensus 12 vKag~~~~a~~ll~~~ 27 (75)
.+.|++++|..++...
T Consensus 11 ~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 11 CKAGRVEEALELFKEM 26 (35)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7999999999998754
No 52
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=45.11 E-value=8.8 Score=24.56 Aligned_cols=32 Identities=25% Similarity=0.109 Sum_probs=27.0
Q ss_pred CChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCC
Q 036617 15 KDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLP 51 (75)
Q Consensus 15 g~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~ 51 (75)
|=+| +.+-+...++.|..+|++.|++ +|++|-
T Consensus 36 ~~lE-~~P~i~~~l~~l~~~G~~~i~l----vPl~L~ 67 (103)
T cd03413 36 GTVE-GYPGLDDVLAKLKKAGIKKVTL----MPLMLV 67 (103)
T ss_pred EEEc-CCCCHHHHHHHHHHcCCCEEEE----Eehhhe
Confidence 4466 7788899999999999999887 799885
No 53
>PF10414 CysG_dimeriser: Sirohaem synthase dimerisation region; InterPro: IPR019478 Bacterial sulphur metabolism depends on the iron-containing porphinoid sirohaem. CysG is a multi-functional enzyme with S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase, dehydrogenase and ferrochelatase activities. CysG synthesizes sirohaem from uroporphyrinogen III via reactions which encompass two branchpoint intermediates in tetrapyrrole biosynthesis, diverting flux first from protoporphyrin IX biosynthesis and then from cobalamin (vitamin B12) biosynthesis. CysG is a dimer. Its dimerisation region is 74 residues long, and acts to hold the two structurally similar protomers held together asymmetrically through a number of salt-bridges across complementary residues within the dimerisation region []. CysG dimerisation produces a series of active sites, accounting for CysG's multi-functionality, catalysing four diverse reactions: Two SAM-dependent methylations NAD+-dependent tetrapyrrole dehydrogenation Metal chelation ; GO: 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1PJT_A 1PJS_A 1PJQ_A.
Probab=43.79 E-value=42 Score=19.12 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=16.4
Q ss_pred HHHHhhcCChHHHHHHHHHHHH
Q 036617 8 ALDALNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 8 aIyavKag~~~~a~~ll~~~~~ 29 (75)
....+.+|+.++|...|...++
T Consensus 39 ~~~~~~~g~~~~A~~~l~~~L~ 60 (60)
T PF10414_consen 39 FAELVLAGDEEEAEALLEQALD 60 (60)
T ss_dssp HHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHHHhhC
Confidence 4456999999999999987653
No 54
>TIGR02267 Myxococcus xanthus paralogous family TIGR02267. This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=40.95 E-value=33 Score=23.63 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=19.6
Q ss_pred hhHHHHH----hhcCChHHHHHHHHHHHHH
Q 036617 5 LIPALDA----LNRKDVEGVINLLRRALQV 30 (75)
Q Consensus 5 vm~aIya----vKag~~~~a~~ll~~~~~~ 30 (75)
+|.++|- -++||+++|+..|+.++..
T Consensus 76 L~~Al~r~~~~~daGDldgARq~m~dvLAV 105 (123)
T TIGR02267 76 LSRALTEAIRHRDAGDLDGARALLLDVLAV 105 (123)
T ss_pred HHHHHHHHHHhhhccChHHHHHHHHHHHHH
Confidence 4555543 5799999999999987654
No 55
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.57 E-value=15 Score=25.96 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=12.3
Q ss_pred eeeeeccCcccCCCC
Q 036617 38 IVILASNDTLDLLPP 52 (75)
Q Consensus 38 ~vILaCTEiPl~L~~ 52 (75)
.++|||-|+|.-.|-
T Consensus 6 lv~lGCPeiP~qiss 20 (148)
T COG4081 6 LVSLGCPEIPPQISS 20 (148)
T ss_pred EEEecCCCCCccchH
Confidence 589999999987653
No 56
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=38.92 E-value=35 Score=22.02 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=24.5
Q ss_pred hhhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617 4 TLIPALDALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 4 ~vm~aIyavKag~~~~a~~ll~~~~~~L~~ 33 (75)
.+.|.+.++++||.+++..+....++.+..
T Consensus 129 ~l~~~~~al~~~d~~~~~~~~~~~~~~~~~ 158 (171)
T PF02203_consen 129 ALDPLLAALRAGDIAAFMQLPNEKIQPLFD 158 (171)
T ss_dssp HHHHHHHHHHTT-HHHHHHSSHHHHHHHHH
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHhcchhHH
Confidence 468889999999999999988888877765
No 57
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=38.75 E-value=96 Score=21.41 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCCC-------CCcccccCchHHHHHHH
Q 036617 15 KDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPD-------DPLLNKCIDPMDALVCS 70 (75)
Q Consensus 15 g~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~~-------~~~~~~~iD~tdaLara 70 (75)
||+++-.+-+...++....+|+|.|++.=+=++..-..+ .+....+++.+..+|+.
T Consensus 10 ~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 72 (255)
T cd07581 10 GDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARE 72 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHH
Confidence 788888888888888889999999996544333322111 22334455555566654
No 58
>PF02754 CCG: Cysteine-rich domain; InterPro: IPR004017 This domain is usually found in two copies per protein. It contains up to four conserved cysteines. The group includes proteins characterised as: heterodisulphide reductase, subunit B (HrdB); succinate dehydrogenase, subunit C (SdhC, 1.3.99.1 from EC); Fe-S oxidoreductase; glycerol-3-phosphate dehydrogenase subunit C (Anaerobic GlpC, 1.1.99.5 from EC); and glycolate oxidase iron-sulphur subunit (GlcF) [].
Probab=38.41 E-value=73 Score=17.75 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=26.5
Q ss_pred hhcCChHHHHHHHHHHHHHHHHhhhceeeeecc
Q 036617 12 LNRKDVEGVINLLRRALQVLLARAVNIVILASN 44 (75)
Q Consensus 12 vKag~~~~a~~ll~~~~~~L~~rg~~~vILaCT 44 (75)
...|+-+.+..+.+..++.+...|++.||-.|.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~ 78 (85)
T PF02754_consen 46 YFAGDEELAEKVAKRNLKEIKEAGADTIVTPCP 78 (85)
T ss_pred HHcCchhhHHHHHHHHHHHHHHcCCCEEEEeCh
Confidence 345566678888888889999889999998874
No 59
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=38.35 E-value=28 Score=26.28 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=42.3
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCCCCCcccccCchHHHHHHH
Q 036617 10 DALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCS 70 (75)
Q Consensus 10 yavKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~~~~~~~~~iD~tdaLara 70 (75)
|.++.++.+.+..+.+.-++.+...|+|.|+-+|.==-+-| ++....+..-|.+-|+++
T Consensus 337 ~g~~~~~~~~s~~i~~~~~~~~~~~~ad~ivt~Cp~C~~ql--~~~~~~~~~H~~ell~~~ 395 (397)
T TIGR03379 337 YGFKSENYETSQAIGKSLFDQIEQSGADYVITDCETCKWQI--EMSTSLECIHPISLLAMA 395 (397)
T ss_pred CccCccchHHHHHHHHHHHHHHHHhCCCEEEeCCcchHHHH--HhcCCCCCCCHHHHHHHH
Confidence 45677888999999999999999999999988775222222 223445556777777764
No 60
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=38.16 E-value=35 Score=22.27 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=14.9
Q ss_pred HHHhhcCChHHHHHHHHH
Q 036617 9 LDALNRKDVEGVINLLRR 26 (75)
Q Consensus 9 IyavKag~~~~a~~ll~~ 26 (75)
|++++.|++++|.+++..
T Consensus 46 i~~i~~g~~~~A~~~i~~ 63 (111)
T PF14691_consen 46 IRLIREGNFKEAYELIRE 63 (111)
T ss_dssp HHHHHCT-HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 577999999999998875
No 61
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=37.65 E-value=67 Score=22.86 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=25.9
Q ss_pred hhhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617 4 TLIPALDALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 4 ~vm~aIyavKag~~~~a~~ll~~~~~~L~~ 33 (75)
.++.|+...+.||.++|..+|.+++..-..
T Consensus 310 ~~l~A~~~~~~g~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 310 PLAEALYAFAEGNYATALELLGPVRDDLAR 339 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999876543
No 62
>TIGR03288 CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, subunit B. Members of this protein family are subunit B of the CoB--CoM heterodisulfide reductase, or simply heterodisulfide reductase, found in methanogenic archaea. Some archaea species have two copies, HdrB1 and HdrB2.
Probab=37.52 E-value=60 Score=23.61 Aligned_cols=59 Identities=5% Similarity=0.059 Sum_probs=42.8
Q ss_pred hhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC---------CCCcccccCchHHHHHHH
Q 036617 12 LNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP---------DDPLLNKCIDPMDALVCS 70 (75)
Q Consensus 12 vKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~---------~~~~~~~~iD~tdaLara 70 (75)
++.++.+.+..+.+.-++.+.+.|++.||-.|.==-.-|.. ..+......++++-|+++
T Consensus 199 ~~~~~~~~s~~l~~~k~~~~~~~gad~ivt~Cp~C~~~l~~~~~~~~~~~g~~~~~~V~h~~elLa~a 266 (290)
T TIGR03288 199 VRSRDLDVALDMTKEKLENMKEAGADCIVNVCPFCHLQFDRGQIEIKEKFGEEYNIPVLHYSQLLGLA 266 (290)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCEEEEeCchHHHHHHHHHHHHHHhcCCCCCcCeeeHHHHHHHH
Confidence 56677889999999999999999999999988644333321 012244567888888776
No 63
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=37.07 E-value=41 Score=19.77 Aligned_cols=18 Identities=39% Similarity=0.414 Sum_probs=14.8
Q ss_pred HHHHHhhcCChHHHHHHH
Q 036617 7 PALDALNRKDVEGVINLL 24 (75)
Q Consensus 7 ~aIyavKag~~~~a~~ll 24 (75)
-|.|..++||..+|..+|
T Consensus 45 ~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 45 VALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHhC
Confidence 466779999999998875
No 64
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=36.96 E-value=55 Score=17.83 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=20.0
Q ss_pred hHHHHHhhcCChHHHHHHHHHHHHH
Q 036617 6 IPALDALNRKDVEGVINLLRRALQV 30 (75)
Q Consensus 6 m~aIyavKag~~~~a~~ll~~~~~~ 30 (75)
-.|...++.|+.++|...+..+++.
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIEL 32 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3466778999999999999887763
No 65
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=36.38 E-value=67 Score=16.67 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=18.1
Q ss_pred HHHHhhcCChHHHHHHHHHHHHH
Q 036617 8 ALDALNRKDVEGVINLLRRALQV 30 (75)
Q Consensus 8 aIyavKag~~~~a~~ll~~~~~~ 30 (75)
|-.-...|+.++|...++.+++.
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 33447899999999999987753
No 66
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=35.92 E-value=58 Score=24.76 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhceeeeecc
Q 036617 17 VEGVINLLRRALQVLLARAVNIVILASN 44 (75)
Q Consensus 17 ~~~a~~ll~~~~~~L~~rg~~~vILaCT 44 (75)
-+.=++.-.+..+.|..|+++.+|+||.
T Consensus 49 ~e~I~~~~~~i~~~l~~~~ik~lVIACN 76 (269)
T COG0796 49 EEEIRERTLEIVDFLLERGIKALVIACN 76 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 4555677788899999999999999996
No 67
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=35.91 E-value=48 Score=19.01 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=16.8
Q ss_pred HHHhhcCChHHHHHHHHHHHH
Q 036617 9 LDALNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 9 IyavKag~~~~a~~ll~~~~~ 29 (75)
|.++++||++..++++..--+
T Consensus 2 ~~al~~~d~~~~~~~~~~~~~ 22 (85)
T PF08544_consen 2 IKALAEGDLELLGELMNENQE 22 (85)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHhhh
Confidence 678899999999998885443
No 68
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.14 E-value=56 Score=24.19 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=21.6
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHH
Q 036617 7 PALDALNRKDVEGVINLLRRALQVLL 32 (75)
Q Consensus 7 ~aIyavKag~~~~a~~ll~~~~~~L~ 32 (75)
.+||++.+||+++|..-+..+...+-
T Consensus 35 ~aI~~~H~~~~eeA~~~l~~a~~~v~ 60 (204)
T COG2178 35 EAIFLLHRGDFEEAEKKLKKASEAVE 60 (204)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 58999999999999998887766543
No 69
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=35.06 E-value=52 Score=15.01 Aligned_cols=17 Identities=6% Similarity=0.102 Sum_probs=13.9
Q ss_pred hhcCChHHHHHHHHHHH
Q 036617 12 LNRKDVEGVINLLRRAL 28 (75)
Q Consensus 12 vKag~~~~a~~ll~~~~ 28 (75)
.+.|++++|..++....
T Consensus 11 ~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 11 CKMGQFEEALEVFDEMR 27 (31)
T ss_pred HccchHHHHHHHHHHHh
Confidence 68999999999887543
No 70
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=34.41 E-value=67 Score=25.83 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=26.1
Q ss_pred hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617 5 LIPALDALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~~~~L~~ 33 (75)
+..+..++|.||++..++||...-.+|..
T Consensus 283 vl~a~~Al~~~dl~~fG~Lm~~SH~slrd 311 (390)
T COG0153 283 VLEAAKALRSGDLTEFGELMNESHESLRD 311 (390)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999998777765
No 71
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=34.36 E-value=43 Score=13.85 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=17.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHH
Q 036617 8 ALDALNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 8 aIyavKag~~~~a~~ll~~~~~ 29 (75)
|....+.|+.+.|...++.++.
T Consensus 8 a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 8 GNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHhhHHHHHHHHHHHHc
Confidence 5556788999999998887664
No 72
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=34.35 E-value=21 Score=21.04 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=14.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHH
Q 036617 7 PALDALNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 7 ~aIyavKag~~~~a~~ll~~~~~ 29 (75)
.-+.+++.||++.|..++..-.+
T Consensus 15 ~f~~al~~gd~~~a~~~~~~~~~ 37 (111)
T PF12870_consen 15 NFFDALKNGDYEKAYAYLSPESR 37 (111)
T ss_dssp HHHHHHCTT-HHHHHHTB--TT-
T ss_pred HHHHHHHcCCHHHHHHhhCcccc
Confidence 34556999999999998876555
No 73
>PF04121 Nup84_Nup100: Nuclear pore protein 84 / 107 ; InterPro: IPR007252 Nup84p forms a complex with five proteins, including Nup120p, Nup85p, Sec13p, and a Sec13p homolog. This Nup84p complex in conjunction with Sec13-type proteins is required for correct nuclear pore biogenesis [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 3CQC_A 3CQG_A 3I4R_A 3IKO_I 3JRO_C.
Probab=33.68 E-value=42 Score=27.88 Aligned_cols=32 Identities=25% Similarity=0.183 Sum_probs=25.5
Q ss_pred cchhhHHHHH-hhcCChHHHHHHHHHHHHHHHH
Q 036617 2 EHTLIPALDA-LNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 2 ~~~vm~aIya-vKag~~~~a~~ll~~~~~~L~~ 33 (75)
|+.++..||. +.+|++++|+.+-+..-|.=++
T Consensus 133 e~~~~~~i~~llR~G~~~eA~~lc~~~gq~wrA 165 (697)
T PF04121_consen 133 ERALLKYIFELLRAGRIEEAQELCRERGQPWRA 165 (697)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHH
Confidence 5678999999 9999999999999887665555
No 74
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=33.15 E-value=77 Score=19.83 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhhceeeeecc
Q 036617 20 VINLLRRALQVLLARAVNIVILASN 44 (75)
Q Consensus 20 a~~ll~~~~~~L~~rg~~~vILaCT 44 (75)
+..+++.+.+....+|++++.+.+.
T Consensus 103 G~~ll~~~~~~a~~~g~~~i~l~~~ 127 (150)
T PLN02706 103 GKKIIEALTEHARSAGCYKVILDCS 127 (150)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEec
Confidence 5678999999999999999998864
No 75
>PLN02757 sirohydrochlorine ferrochelatase
Probab=33.08 E-value=15 Score=25.17 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC
Q 036617 17 VEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP 52 (75)
Q Consensus 17 ~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~ 52 (75)
++-+.+-+..+++.+..+|++.|++ +|++|-.
T Consensus 53 le~~~Psl~eal~~l~~~g~~~vvV----vP~FL~~ 84 (154)
T PLN02757 53 MELAEPSIKDAFGRCVEQGASRVIV----SPFFLSP 84 (154)
T ss_pred EecCCCCHHHHHHHHHHCCCCEEEE----EEhhhcC
Confidence 3446788999999999999999997 8888865
No 76
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=32.72 E-value=21 Score=24.93 Aligned_cols=11 Identities=9% Similarity=0.169 Sum_probs=5.7
Q ss_pred eeeeccCcccC
Q 036617 39 VILASNDTLDL 49 (75)
Q Consensus 39 vILaCTEiPl~ 49 (75)
++|||-|.|.-
T Consensus 2 ilLGCPe~Pvq 12 (139)
T PF09001_consen 2 ILLGCPEVPVQ 12 (139)
T ss_dssp EE---S-STTH
T ss_pred ccccCCCCcch
Confidence 78999999974
No 77
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=32.65 E-value=37 Score=25.60 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhceeeeecc
Q 036617 26 RALQVLLARAVNIVILASN 44 (75)
Q Consensus 26 ~~~~~L~~rg~~~vILaCT 44 (75)
+.++.++..||++||+++-
T Consensus 95 e~i~~~l~~Ga~rViigT~ 113 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSY 113 (262)
T ss_pred HHHHHHHHcCCCEEEEchH
Confidence 8899999999999999973
No 78
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=32.53 E-value=75 Score=25.61 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=21.4
Q ss_pred HHHHH-hhcCChHHHHHHHHHHHHHHHH
Q 036617 7 PALDA-LNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 7 ~aIya-vKag~~~~a~~ll~~~~~~L~~ 33 (75)
..-|. ++.|++++|.+.|+.+++.+.-
T Consensus 209 k~gyk~~t~gKF~eA~~~Fr~iL~~i~l 236 (422)
T PF06957_consen 209 KEGYKLFTAGKFEEAIEIFRSILHSIPL 236 (422)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhe
Confidence 34465 9999999999999999998643
No 79
>PF13698 DUF4156: Domain of unknown function (DUF4156)
Probab=32.21 E-value=69 Score=20.21 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhceeeeec
Q 036617 17 VEGVINLLRRALQVLLARAVNIVILAS 43 (75)
Q Consensus 17 ~~~a~~ll~~~~~~L~~rg~~~vILaC 43 (75)
+++|.|.|+.-+..| |+|.|.+..
T Consensus 47 ~~ga~NdlrNeAa~l---GgntV~~~~ 70 (93)
T PF13698_consen 47 MRGARNDLRNEAAKL---GGNTVVLVT 70 (93)
T ss_pred HHHHHHHHHHHHHHh---CCCEEEEEe
Confidence 678889998877775 889999755
No 80
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=31.42 E-value=69 Score=16.06 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.4
Q ss_pred hhcCChHHHHHHHHHHH
Q 036617 12 LNRKDVEGVINLLRRAL 28 (75)
Q Consensus 12 vKag~~~~a~~ll~~~~ 28 (75)
.+.|+.++|.+..+.++
T Consensus 10 ~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 10 RQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHCT-HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 68999999999999866
No 81
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=31.27 E-value=62 Score=24.93 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=34.3
Q ss_pred cCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC
Q 036617 14 RKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP 52 (75)
Q Consensus 14 ag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~ 52 (75)
.++.+-++.+.+...+.+...| |.+|.+||++-=-.|+
T Consensus 161 ~q~~~~a~~ig~~i~k~i~e~~-~~liIaSSDf~HYep~ 198 (279)
T COG1355 161 MQDKEVARDIGRAIAKVIKELG-DALIIASSDFTHYEPQ 198 (279)
T ss_pred cccHHHHHHHHHHHHHHHhhcC-CeEEEEecCccccCch
Confidence 4678889999999999999999 9999999999888887
No 82
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=30.67 E-value=67 Score=21.79 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=18.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHHH
Q 036617 9 LDALNRKDVEGVINLLRRALQVL 31 (75)
Q Consensus 9 IyavKag~~~~a~~ll~~~~~~L 31 (75)
+.++++||.++|..+++.-+...
T Consensus 187 ~~ai~~~d~~~A~~~~~~Hl~~~ 209 (212)
T TIGR03338 187 VDAIASGDAERAGALMRAHVAAS 209 (212)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHh
Confidence 45689999999999998766543
No 83
>PRK01217 hypothetical protein; Provisional
Probab=30.62 E-value=1.4e+02 Score=19.76 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=26.3
Q ss_pred hhHHHHHhhcCChHHHHHHHHHH----HHHHH----Hhhhceeee
Q 036617 5 LIPALDALNRKDVEGVINLLRRA----LQVLL----ARAVNIVIL 41 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~----~~~L~----~rg~~~vIL 41 (75)
++.++..+-.|++..+.++|... +++|. ..|+|.||=
T Consensus 42 ~~a~lr~~~GGe~~~Y~~~l~~aR~eA~~rm~~~A~~lGAnAVVg 86 (114)
T PRK01217 42 IVAGLRSLAGGEIKEYVEMAEQARNQALERMIDHAKELGANAVIN 86 (114)
T ss_pred HHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 45677778889988888877654 44444 459999984
No 84
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=30.21 E-value=58 Score=22.95 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=19.6
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHH
Q 036617 9 LDALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 9 IyavKag~~~~a~~ll~~~~~~L~~ 33 (75)
+.++++||.++|..+++.-++....
T Consensus 205 ~~Ai~~~D~~~A~~~m~~Hi~~~~~ 229 (257)
T PRK10225 205 LAALIKKDARAAKLAMWQHLENVKQ 229 (257)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3458999999999999987765433
No 85
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=30.17 E-value=1.1e+02 Score=21.70 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=26.7
Q ss_pred chhhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617 3 HTLIPALDALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 3 ~~vm~aIyavKag~~~~a~~ll~~~~~~L~~ 33 (75)
..+..++.+++.|+.+++...+..+.+.+..
T Consensus 31 ~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~ 61 (352)
T PF02259_consen 31 YSFYRALLALRQGDYDEAKKYIEKARQLLLD 61 (352)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999888887766
No 86
>PHA00371 mat maturation protein
Probab=30.15 E-value=51 Score=26.83 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=19.8
Q ss_pred hhhHHHHHhhcCChHHHHHHHHH
Q 036617 4 TLIPALDALNRKDVEGVINLLRR 26 (75)
Q Consensus 4 ~vm~aIyavKag~~~~a~~ll~~ 26 (75)
.+..+..|+|+||+.+.+++++.
T Consensus 161 ~lv~~yrAvrrGDlkr~~~~i~~ 183 (418)
T PHA00371 161 RLVRAYRAARRGDLKRVRKALRP 183 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHhhh
Confidence 36788999999999999998863
No 87
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=30.02 E-value=1.2e+02 Score=20.65 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=43.6
Q ss_pred hhHHHHHhhcCCh-----HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCCCCCcccccCchHHHHHHH
Q 036617 5 LIPALDALNRKDV-----EGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCS 70 (75)
Q Consensus 5 vm~aIyavKag~~-----~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~~~~~~~~~iD~tdaLara 70 (75)
++.|+-.+-++.+ +..+..+...++.|..+|+..|+. |+|+-..+...++....|.|..--|-+.
T Consensus 81 lID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlV-s~Evg~g~vp~~~~~r~~~d~lG~lnq~ 150 (170)
T PRK05800 81 LVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILV-TNEVGMGIVPEYRLGRHFRDIAGRLNQQ 150 (170)
T ss_pred EehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEE-EcCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 5566655544332 233556677788888888876555 7888776655588899999987665544
No 88
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=30.00 E-value=61 Score=22.13 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=26.9
Q ss_pred hhHHHHH-hhcCCh-HHHHHHHHHHHHHHHHhhhce
Q 036617 5 LIPALDA-LNRKDV-EGVINLLRRALQVLLARAVNI 38 (75)
Q Consensus 5 vm~aIya-vKag~~-~~a~~ll~~~~~~L~~rg~~~ 38 (75)
.+.++|. +||+++ =--.++...++.++..|--|.
T Consensus 43 ~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~ 78 (120)
T PF08579_consen 43 IINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS 78 (120)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc
Confidence 6788888 999999 447788888888888876553
No 89
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=29.44 E-value=94 Score=22.75 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHHHHHHhhhceeeee
Q 036617 16 DVEGVINLLRRALQVLLARAVNIVILA 42 (75)
Q Consensus 16 ~~~~a~~ll~~~~~~L~~rg~~~vILa 42 (75)
..+++++..+++++.|...|+|.+++-
T Consensus 129 ~~~~~~~~~~~q~~~l~~~gvD~l~~E 155 (305)
T PF02574_consen 129 SFEELRDFHREQAEALADAGVDLLLFE 155 (305)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 468999999999999999999999875
No 90
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=29.12 E-value=53 Score=24.68 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhceeeeecc
Q 036617 26 RALQVLLARAVNIVILASN 44 (75)
Q Consensus 26 ~~~~~L~~rg~~~vILaCT 44 (75)
+.+..|+..|+++||+|+.
T Consensus 88 ~~v~~ll~~G~~rViiGt~ 106 (241)
T COG0106 88 EDVEALLDAGVARVIIGTA 106 (241)
T ss_pred HHHHHHHHCCCCEEEEecc
Confidence 4578899999999999986
No 91
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=29.02 E-value=86 Score=25.57 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhceeeeecc
Q 036617 17 VEGVINLLRRALQVLLARAVNIVILASN 44 (75)
Q Consensus 17 ~~~a~~ll~~~~~~L~~rg~~~vILaCT 44 (75)
.+.+...-.+.++.|.+-|||.+||-+|
T Consensus 318 ~~~a~~~g~eIa~~Lk~dgVDAvILtst 345 (431)
T TIGR01917 318 VANSKQFAKEFSKELLAAGVDAVILTST 345 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4456666778889999999999999866
No 92
>cd01028 TOPRIM_TopoIA TOPRIM_TopoIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IA family of DNA topoisomerases (TopoIA). This subgroup contains proteins similar to the Type I DNA topoisomerases: E. coli topisomerases I and III, eukaryotic topoisomerase III and, ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA. These enzymes cleave one strand of the DNA duplex, covalently link to the 5' phosphoryl end of the DNA break and allow the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general b
Probab=28.96 E-value=62 Score=21.24 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=12.2
Q ss_pred HHHHHHHhhhceeeeecc
Q 036617 27 ALQVLLARAVNIVILASN 44 (75)
Q Consensus 27 ~~~~L~~rg~~~vILaCT 44 (75)
.+..|. ++++.||+||+
T Consensus 83 ~ik~l~-~~~d~iiiAtD 99 (142)
T cd01028 83 ALKKLA-KKADEIVLATD 99 (142)
T ss_pred HHHHHH-hcCCEEEEcCC
Confidence 344444 57799999998
No 93
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=28.83 E-value=24 Score=23.42 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=26.3
Q ss_pred CChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC
Q 036617 15 KDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP 52 (75)
Q Consensus 15 g~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~ 52 (75)
+=+|-+.+-+...++.|..+|++.++.- |++|-.
T Consensus 37 afle~~~P~l~~~l~~l~~~G~~~ivVv----PlFL~~ 70 (125)
T cd03415 37 TYNEYAEPNWRDLLNELLSEGYGHIIIA----LAFLGR 70 (125)
T ss_pred EEeecCCCCHHHHHHHHHHCCCCEEEEe----hhhccC
Confidence 3455566779999999999999987763 888854
No 94
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=28.70 E-value=80 Score=21.71 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=18.2
Q ss_pred HHhhcCChHHHHHHHHHHHHHH
Q 036617 10 DALNRKDVEGVINLLRRALQVL 31 (75)
Q Consensus 10 yavKag~~~~a~~ll~~~~~~L 31 (75)
.++++||.++|+..+..-++.-
T Consensus 190 ~Ai~~~D~~~A~~~~~~hl~~~ 211 (221)
T PRK11414 190 AALKAKDKEGCRHCLAEIMQQN 211 (221)
T ss_pred HHHHcCCHHHHHHHHHHHHHHH
Confidence 4589999999999998877653
No 95
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=28.57 E-value=66 Score=26.91 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=25.2
Q ss_pred HHHHhhcCChHHHHHHHHHHH-----HHHHHhhh
Q 036617 8 ALDALNRKDVEGVINLLRRAL-----QVLLARAV 36 (75)
Q Consensus 8 aIyavKag~~~~a~~ll~~~~-----~~L~~rg~ 36 (75)
|+-|++.|.+.+|.+.|.+.. ..|+++|.
T Consensus 507 GLcAFR~G~I~eah~~L~el~~s~r~kELLaQg~ 540 (595)
T PF05470_consen 507 GLCAFRAGLIKEAHQCLSELCSSGRVKELLAQGV 540 (595)
T ss_pred HHHHHHcCCHHHHHHHHHHHHcccchhhhhcccc
Confidence 677899999999999999885 47888886
No 96
>COG1270 CbiB Cobalamin biosynthesis protein CobD/CbiB [Coenzyme metabolism]
Probab=28.36 E-value=44 Score=26.03 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=17.3
Q ss_pred hhHHHHHhhcCChHHHHHHHHH
Q 036617 5 LIPALDALNRKDVEGVINLLRR 26 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~ 26 (75)
+-+-..++|+||+++||..++.
T Consensus 106 ~~~v~~~L~~gdl~~aR~~ls~ 127 (320)
T COG1270 106 ARKVARALRRGDLEGARRALSM 127 (320)
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
Confidence 4455667999999999987764
No 97
>PF09543 DUF2379: Protein of unknown function (DUF2379); InterPro: IPR011753 This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=28.26 E-value=69 Score=21.96 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.4
Q ss_pred hhcCChHHHHHHHHHHHH
Q 036617 12 LNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 12 vKag~~~~a~~ll~~~~~ 29 (75)
-.+||+++|+..|+.++.
T Consensus 85 ~daGD~dgARq~m~dvLA 102 (121)
T PF09543_consen 85 RDAGDLDGARQEMRDVLA 102 (121)
T ss_pred hhccCHHHHHHHHHHHHh
Confidence 578999999999997764
No 98
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.63 E-value=99 Score=24.18 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhceeeeeccCcccCCCCCCCcccc-cCchHHHHHHH
Q 036617 25 RRALQVLLARAVNIVILASNDTLDLLPPDDPLLNK-CIDPMDALVCS 70 (75)
Q Consensus 25 ~~~~~~L~~rg~~~vILaCTEiPl~L~~~~~~~~~-~iD~tdaLara 70 (75)
......|.-+|+-+|=++|.|+|.+....+++... .+|+-++.|+.
T Consensus 171 ~~TlE~LET~gVPvvg~~t~~fPaF~sR~Sg~~~pl~l~~pe~ia~~ 217 (310)
T COG2313 171 GLTLEVLETQGVPVVGYQTNEFPAFFSRESGFRVPLRLESPEEIARI 217 (310)
T ss_pred HHHHHHHHhcCcceeecCCCcccchhcccCCCcCccccCCHHHHHHH
Confidence 34667889999999999999999999875555444 78888888874
No 99
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=27.12 E-value=1.9e+02 Score=19.07 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHHHHHHhhhceeeee
Q 036617 16 DVEGVINLLRRALQVLLARAVNIVILA 42 (75)
Q Consensus 16 ~~~~a~~ll~~~~~~L~~rg~~~vILa 42 (75)
++++..+-++..++.+..+|+..+++.
T Consensus 88 ~~~~~~~nl~~ii~~~~~~~~~~il~t 114 (198)
T cd01821 88 PYTTYKEYLRRYIAEARAKGATPILVT 114 (198)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEEC
Confidence 578899999999999999999877754
No 100
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=27.07 E-value=1.3e+02 Score=18.36 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCC
Q 036617 16 DVEGVINLLRRALQVLLARAVNIVILASNDTLDLL 50 (75)
Q Consensus 16 ~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L 50 (75)
..-|+...+...++.|..+|.++.|+ |.+...-.
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~-~~~~~~~~ 43 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVV-SPGVKDPI 43 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEE-ESS-TTS-
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEE-EcCCCccc
Confidence 35578888999999999999999988 55444433
No 101
>PF08972 DUF1902: Domain of unknown function (DUF1902); InterPro: IPR015066 Members of these prokaryotic proteins adopt a fold consisting of one alpha-helix and four beta-strands. Their function has not, as yet, been elucidated []. ; PDB: 1WV8_A.
Probab=26.69 E-value=61 Score=19.26 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=11.7
Q ss_pred hhhceeeeeccCcc-cCCCC
Q 036617 34 RAVNIVILASNDTL-DLLPP 52 (75)
Q Consensus 34 rg~~~vILaCTEiP-l~L~~ 52 (75)
.-+++.+--|.++| ++...
T Consensus 9 ~EA~VWvA~s~dvpGLvtEA 28 (54)
T PF08972_consen 9 EEAGVWVATSDDVPGLVTEA 28 (54)
T ss_dssp TTTTEEEEE-SSSTT---EE
T ss_pred CCCCEEEEecCCCccceecC
Confidence 34678899999999 55555
No 102
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=26.59 E-value=86 Score=20.03 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.2
Q ss_pred HhhcCChHHHHHHHHHHHHHHHHhh
Q 036617 11 ALNRKDVEGVINLLRRALQVLLARA 35 (75)
Q Consensus 11 avKag~~~~a~~ll~~~~~~L~~rg 35 (75)
++++||++.|...++.....|..++
T Consensus 11 ~I~~g~i~~Ai~w~~~~~~~l~~~~ 35 (145)
T PF10607_consen 11 AILNGDIDPAIEWLNENFPELLKRN 35 (145)
T ss_pred HHHcCCHHHHHHHHHHcCHHHHhcC
Confidence 3799999999999998888888765
No 103
>PHA00673 acetyltransferase domain containing protein
Probab=26.30 E-value=1.1e+02 Score=21.32 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhhceeeeecc
Q 036617 20 VINLLRRALQVLLARAVNIVILASN 44 (75)
Q Consensus 20 a~~ll~~~~~~L~~rg~~~vILaCT 44 (75)
+..||+.+.+....+||..+-+..|
T Consensus 103 G~~Ll~~A~~~Ar~~Gc~~lyis~~ 127 (154)
T PHA00673 103 GMALLRATEALARDLGATGLYVSGP 127 (154)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecC
Confidence 6789999999999999999998877
No 104
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=26.23 E-value=1e+02 Score=25.18 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhceeeeecc
Q 036617 17 VEGVINLLRRALQVLLARAVNIVILASN 44 (75)
Q Consensus 17 ~~~a~~ll~~~~~~L~~rg~~~vILaCT 44 (75)
.+.+...-.+.++.|.+-|||.+||-+|
T Consensus 318 ~~~a~~~g~eIa~~Lk~dgVDAVILTst 345 (431)
T TIGR01918 318 VAESKQFAKEFVVELKQGGVDAVILTST 345 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3556677778889999999999999866
No 105
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=25.72 E-value=1.3e+02 Score=17.94 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhhceeeee
Q 036617 19 GVINLLRRALQVLLARAVNIVILA 42 (75)
Q Consensus 19 ~a~~ll~~~~~~L~~rg~~~vILa 42 (75)
|+...+...++.|.++|.++-++.
T Consensus 2 G~~~~~~~l~~~L~~~G~~V~v~~ 25 (160)
T PF13579_consen 2 GIERYVRELARALAARGHEVTVVT 25 (160)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEe
Confidence 455677888999999999998876
No 106
>PRK03732 hypothetical protein; Provisional
Probab=25.54 E-value=2e+02 Score=19.12 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=27.1
Q ss_pred hhHHHHHhhcCChHHHHHHHHHHH----HHHH----Hhhhceeee
Q 036617 5 LIPALDALNRKDVEGVINLLRRAL----QVLL----ARAVNIVIL 41 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~~----~~L~----~rg~~~vIL 41 (75)
++.++..+.-|++..+.++|.+.- ++|. ..|+|.||-
T Consensus 42 ~~a~lr~i~GGe~~~Yt~~l~~aR~~A~~rm~~~A~~lGAnAVVg 86 (114)
T PRK03732 42 IMALLRNIKGGEVKEYTQMMAEAREEALRRMALHAKELGANAVVN 86 (114)
T ss_pred HHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 567888888999988888886543 3343 448999984
No 107
>PRK15054 nitrate reductase 2 subunit delta; Provisional
Probab=25.49 E-value=57 Score=24.32 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=31.3
Q ss_pred hhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC
Q 036617 12 LNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP 52 (75)
Q Consensus 12 vKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~ 52 (75)
..-||.-.=+..|-...+.+.+.|. -+.+.|+|+.||-
T Consensus 72 hvhGdsRdRGqAmvdL~~~Y~~~G~---~~~~~ELPDyLPl 109 (231)
T PRK15054 72 HVHAESRDRGQAMVDLLAEYEKVGL---QLDCRELPDYLPL 109 (231)
T ss_pred eecCCchHHHHHHHHHHHHHHHcCC---CCCCCcCcchHHH
Confidence 4567777778889999999999884 4669999999985
No 108
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=25.07 E-value=1.5e+02 Score=21.74 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=15.1
Q ss_pred HHhhcCChHHHHHHHHHHHH
Q 036617 10 DALNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 10 yavKag~~~~a~~ll~~~~~ 29 (75)
.++++||.++|+++++..+.
T Consensus 218 ~~~~~gd~~~a~~~~~~~~~ 237 (289)
T cd00951 218 AAVRAGDHATVKRLLRDFFL 237 (289)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 45999999999997554333
No 109
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=25.04 E-value=1.2e+02 Score=19.97 Aligned_cols=27 Identities=7% Similarity=0.277 Sum_probs=24.6
Q ss_pred cCChHHHHHHHHHHHHHHHHhhhceee
Q 036617 14 RKDVEGVINLLRRALQVLLARAVNIVI 40 (75)
Q Consensus 14 ag~~~~a~~ll~~~~~~L~~rg~~~vI 40 (75)
-|++++-..+++.+-+..++.|++++.
T Consensus 47 Eg~~del~~~ik~~~Ea~~~~g~~Rv~ 73 (100)
T COG0011 47 EGELDELMEAVKEAHEAVFEKGAPRVS 73 (100)
T ss_pred EecHHHHHHHHHHHHHHHHhcCCceEE
Confidence 378999999999999999999999986
No 110
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=24.67 E-value=1.1e+02 Score=22.68 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHHHHHHhhhceeeee
Q 036617 16 DVEGVINLLRRALQVLLARAVNIVILA 42 (75)
Q Consensus 16 ~~~~a~~ll~~~~~~L~~rg~~~vILa 42 (75)
+.+++.+.+.++++.|...|||.+++-
T Consensus 134 ~~~~~~~~~~~q~~~l~~~gvD~i~~E 160 (304)
T PRK09485 134 SEEELQDFHRPRIEALAEAGADLLACE 160 (304)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEe
Confidence 478999999999999999999999974
No 111
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=24.58 E-value=1.5e+02 Score=17.04 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=13.8
Q ss_pred hHHHHHhhcCChHHHHHHHHHHHH
Q 036617 6 IPALDALNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 6 m~aIyavKag~~~~a~~ll~~~~~ 29 (75)
..+...++.|+.++|...+...++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~ 30 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLK 30 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445666666666666665543
No 112
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=24.54 E-value=1.2e+02 Score=20.82 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=27.7
Q ss_pred hcCChHHHHHHHHHHHHHHHHhhhceeeeeccCccc
Q 036617 13 NRKDVEGVINLLRRALQVLLARAVNIVILASNDTLD 48 (75)
Q Consensus 13 Kag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl 48 (75)
+.||+++-..-+...++....+|++.+++-=.=++.
T Consensus 10 ~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g 45 (254)
T cd07576 10 RDGDVAANLARLDEAAARAAAAGADLLVFPELFLTG 45 (254)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccC
Confidence 568888888888888888888999999965443443
No 113
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=24.34 E-value=78 Score=21.34 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=22.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHhhhceeeee
Q 036617 7 PALDALNRKDVEGVINLLRRALQVLLARAVNIVILA 42 (75)
Q Consensus 7 ~aIyavKag~~~~a~~ll~~~~~~L~~rg~~~vILa 42 (75)
++|+.+++..-..+. .+..|.++|++.++-+
T Consensus 42 ~ai~~l~~~~~~~~~-----~~~~L~~~GV~~~aC~ 72 (112)
T COG1416 42 PAIAFLSEKANIAAV-----RVAELAQQGVEFVACG 72 (112)
T ss_pred chhHHhhhhccchhH-----HHHHHHHCCCEEEEec
Confidence 677777666555544 6788999999998833
No 114
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=24.08 E-value=1.2e+02 Score=18.29 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhhceeeeeccC
Q 036617 19 GVINLLRRALQVLLARAVNIVILASND 45 (75)
Q Consensus 19 ~a~~ll~~~~~~L~~rg~~~vILaCTE 45 (75)
-+..|++...+.+..+|+..+++-+.+
T Consensus 89 l~~~L~~~~~~~~~~~g~~~~~l~~~~ 115 (127)
T PF13527_consen 89 LGRQLMRALLERARERGVPFIFLFPSS 115 (127)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEE-SS
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 367899999999999999999886643
No 115
>PRK15331 chaperone protein SicA; Provisional
Probab=24.05 E-value=90 Score=22.13 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=18.8
Q ss_pred hhHHHHH-----hhcCChHHHHHHHHHH
Q 036617 5 LIPALDA-----LNRKDVEGVINLLRRA 27 (75)
Q Consensus 5 vm~aIya-----vKag~~~~a~~ll~~~ 27 (75)
.|.+||+ +..|++++|..+|+-.
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L 63 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFL 63 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5777775 7899999999998743
No 116
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.02 E-value=81 Score=22.52 Aligned_cols=22 Identities=5% Similarity=0.329 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhceeeeeccC
Q 036617 24 LRRALQVLLARAVNIVILASND 45 (75)
Q Consensus 24 l~~~~~~L~~rg~~~vILaCTE 45 (75)
+..++..+...|+|+||+++..
T Consensus 181 ~~~~v~~i~~~~~d~vi~~~~~ 202 (344)
T cd06348 181 FQAQITAVLNSKPDLIVISALA 202 (344)
T ss_pred HHHHHHHHHhcCCCEEEECCcc
Confidence 6677888999999999998864
No 117
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=23.81 E-value=1.4e+02 Score=20.77 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=26.4
Q ss_pred hhcCChHHHHHHHHHHHHHHHHhhhceeeeecc
Q 036617 12 LNRKDVEGVINLLRRALQVLLARAVNIVILASN 44 (75)
Q Consensus 12 vKag~~~~a~~ll~~~~~~L~~rg~~~vILaCT 44 (75)
.+.||+++-..-+...++....+|+|.+++.=+
T Consensus 9 ~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~ 41 (261)
T cd07585 9 ARVGDKARNLAVIARWTRKAAAQGAELVCFPEM 41 (261)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 356788888888888888888899999997643
No 118
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=23.70 E-value=1.4e+02 Score=22.14 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=23.9
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHhhhc
Q 036617 10 DALNRKDVEGVINLLRRALQVLLARAVN 37 (75)
Q Consensus 10 yavKag~~~~a~~ll~~~~~~L~~rg~~ 37 (75)
..+|.|+.++|+++|....+.+......
T Consensus 14 qlvk~~~yeeA~q~l~~fs~~f~~~~~~ 41 (232)
T PF09577_consen 14 QLVKQGKYEEAKQLLEYFSEQFTSVDFK 41 (232)
T ss_pred HHHHcccHHHHHHHHHHHHHHHhhcccc
Confidence 3499999999999999999998886553
No 119
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.66 E-value=75 Score=22.97 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhceeeeecc
Q 036617 26 RALQVLLARAVNIVILASN 44 (75)
Q Consensus 26 ~~~~~L~~rg~~~vILaCT 44 (75)
+.++.++..|++++|+++-
T Consensus 86 e~~~~~l~~Ga~kvvigt~ 104 (232)
T PRK13586 86 EKAKRLLSLDVNALVFSTI 104 (232)
T ss_pred HHHHHHHHCCCCEEEECch
Confidence 4567788899999999864
No 120
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=23.40 E-value=77 Score=22.51 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=14.2
Q ss_pred HHHHHHHhhhceeeeecc
Q 036617 27 ALQVLLARAVNIVILASN 44 (75)
Q Consensus 27 ~~~~L~~rg~~~vILaCT 44 (75)
.++.|+..|+++||+++-
T Consensus 87 d~~~ll~~Ga~~Vvigt~ 104 (229)
T PF00977_consen 87 DAERLLDAGADRVVIGTE 104 (229)
T ss_dssp HHHHHHHTT-SEEEESHH
T ss_pred HHHHHHHhCCCEEEeChH
Confidence 467889999999999874
No 121
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=23.35 E-value=1.1e+02 Score=16.29 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=20.5
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHhh
Q 036617 10 DALNRKDVEGVINLLRRALQVLLARA 35 (75)
Q Consensus 10 yavKag~~~~a~~ll~~~~~~L~~rg 35 (75)
.++..||+..|.+.+...-..+..++
T Consensus 10 ~~i~~g~~~~a~~~~~~~~~~l~~~~ 35 (58)
T smart00668 10 ELILKGDWDEALEWLSSLKPPLLERN 35 (58)
T ss_pred HHHHcCCHHHHHHHHHHcCHHHhccC
Confidence 34899999999999988777665544
No 122
>TIGR00684 narJ nitrate reductase molybdenum cofactor assembly chaperone. This protein is termed NarJ in most species that have a single copy, and has been called the delta subunit of nitrate reductase. However, although it is required for correct assembly of active enzyme, it dissociates and is not part of the enzyme. Two hits to this model are found each in E. coli and in Mycobacterium tuberculosis, but in each case duplication to create paralogs appears to be recent. The NarX protein of Mycobacterium tuberculosis includes one of these paralogs as a domain, fused to structural domains of nitrate reductases before and after the NarJ-homologous region.
Probab=23.29 E-value=84 Score=21.57 Aligned_cols=38 Identities=11% Similarity=-0.060 Sum_probs=31.1
Q ss_pred hhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC
Q 036617 12 LNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP 52 (75)
Q Consensus 12 vKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~ 52 (75)
..-||-..=+..|....+.+...|-+. ...|+|+-||-
T Consensus 69 ~~~Gd~r~RG~al~~l~~~Y~~~G~~~---~~~ELPDyLp~ 106 (152)
T TIGR00684 69 LLKGEERMRGQEMLELKSHYEQQGDMP---VDRELPDYLPL 106 (152)
T ss_pred hccCCchhHHHHHHHHHHHHHHcCCCC---CCCCCCchHHH
Confidence 446777777888999999999999765 58999998884
No 123
>PLN02489 homocysteine S-methyltransferase
Probab=23.28 E-value=1.3e+02 Score=23.01 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHHHHHHHhhhceeeee
Q 036617 16 DVEGVINLLRRALQVLLARAVNIVILA 42 (75)
Q Consensus 16 ~~~~a~~ll~~~~~~L~~rg~~~vILa 42 (75)
..++..+..+.+++.|.+.|||.+++-
T Consensus 161 ~~~e~~~~~~~qi~~l~~~gvD~i~~E 187 (335)
T PLN02489 161 TLEKLKDFHRRRLQVLAEAGPDLIAFE 187 (335)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 458899999999999999999999974
No 124
>TIGR00029 S20 ribosomal protein S20. This family consists of bacterial (and chloroplast) examples of the bacteria ribosomal small subunit protein S20.
Probab=23.15 E-value=1.5e+02 Score=18.81 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=18.5
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHH
Q 036617 10 DALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 10 yavKag~~~~a~~ll~~~~~~L~~ 33 (75)
.++..||.++|.++|..+...|-.
T Consensus 37 ~ai~~~d~~~a~~~l~~a~s~iDk 60 (87)
T TIGR00029 37 AAIAAGDKDKAQEAFKEAAKKLDR 60 (87)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHH
Confidence 357889999999999877665543
No 125
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=23.14 E-value=1.1e+02 Score=21.63 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=21.6
Q ss_pred cchhhHHHHHhhcCChHHHHHHHHHHH
Q 036617 2 EHTLIPALDALNRKDVEGVINLLRRAL 28 (75)
Q Consensus 2 ~~~vm~aIyavKag~~~~a~~ll~~~~ 28 (75)
|..+..+.-.+++|+..+|..+|+.+.
T Consensus 45 e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 45 ELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 344667777899999999999999753
No 126
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=23.11 E-value=1.5e+02 Score=20.57 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=20.2
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHH
Q 036617 9 LDALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 9 IyavKag~~~~a~~ll~~~~~~L~~ 33 (75)
+.++++||.+.|..+++.=++.-..
T Consensus 192 l~Ai~~~d~~~A~~~m~~Hl~~~~~ 216 (230)
T COG1802 192 LEALEARDAEAAAEAMRQHLRRARS 216 (230)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4568999999999999877765544
No 127
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=23.02 E-value=1.2e+02 Score=22.21 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=12.9
Q ss_pred hhcCChHHHHHHHHHHHHHHHHh
Q 036617 12 LNRKDVEGVINLLRRALQVLLAR 34 (75)
Q Consensus 12 vKag~~~~a~~ll~~~~~~L~~r 34 (75)
||+++.++|.+||..-+..|+.+
T Consensus 1 v~~kky~eAidLL~~Ga~~ll~~ 23 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALILLKH 23 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHHHHHHHC
Confidence 45566666666666665555554
No 128
>PRK12856 hypothetical protein; Provisional
Probab=22.91 E-value=2.3e+02 Score=18.52 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=26.6
Q ss_pred hhHHHHHhhcCChHHHHHHHHHH----HHHHH----Hhhhceeee
Q 036617 5 LIPALDALNRKDVEGVINLLRRA----LQVLL----ARAVNIVIL 41 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~----~~~L~----~rg~~~vIL 41 (75)
++.++..+--|+...+.++|.+. +++|. ..|+|.||-
T Consensus 35 ~~a~lr~ivGG~~~~Y~~~l~~aR~~A~~rm~~~A~~lGAnAVvg 79 (103)
T PRK12856 35 LFASVRDVVGGRAGSYESKLKEARDIAMDEMKELAKQKGANAIVG 79 (103)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 56678888889988888887654 34444 348999884
No 129
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=22.90 E-value=80 Score=21.85 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhceeeeec
Q 036617 26 RALQVLLARAVNIVILAS 43 (75)
Q Consensus 26 ~~~~~L~~rg~~~vILaC 43 (75)
+.++.++..|++++|+++
T Consensus 85 ed~~~~~~~Ga~~vvlgs 102 (230)
T TIGR00007 85 EDVEKLLDLGVDRVIIGT 102 (230)
T ss_pred HHHHHHHHcCCCEEEECh
Confidence 456778889999999885
No 130
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=22.81 E-value=1.2e+02 Score=23.49 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.6
Q ss_pred CcchhhHHHHHhhcCChHHHHHHHHHHHH
Q 036617 1 MEHTLIPALDALNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 1 ~~~~vm~aIyavKag~~~~a~~ll~~~~~ 29 (75)
+.+.++.|-.+|-.||.+.|..+|...-+
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~ 29 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQ 29 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35678999999999999999999987633
No 131
>PRK07630 CobD/CbiB family protein; Provisional
Probab=22.75 E-value=1.3e+02 Score=22.71 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=14.5
Q ss_pred HHhhcCChHHHHHHHHH
Q 036617 10 DALNRKDVEGVINLLRR 26 (75)
Q Consensus 10 yavKag~~~~a~~ll~~ 26 (75)
.++++||+++|++.+..
T Consensus 103 ~al~~~dl~~AR~~l~~ 119 (312)
T PRK07630 103 LALRNDDLPRARELLGE 119 (312)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 44899999999998876
No 132
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=22.62 E-value=1.1e+02 Score=14.54 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=17.0
Q ss_pred HHHHhhcCChHHHHHHHHHHHH
Q 036617 8 ALDALNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 8 aIyavKag~~~~a~~ll~~~~~ 29 (75)
|..-.+.|++++|..-++.+++
T Consensus 8 g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 8 GNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHHHHHH
Confidence 4445889999999999998775
No 133
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=22.56 E-value=80 Score=19.04 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC
Q 036617 17 VEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP 52 (75)
Q Consensus 17 ~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~ 52 (75)
++...+-+..+++.|...|++.+++ +|++|-.
T Consensus 39 le~~~p~~~~~l~~l~~~g~~~v~v----vPlfl~~ 70 (101)
T cd03416 39 LELAEPSLAEALDELAAQGATRIVV----VPLFLLA 70 (101)
T ss_pred EEcCCCCHHHHHHHHHHcCCCEEEE----EeeEeCC
Confidence 4444667888899999999998887 6888865
No 134
>PRK12855 hypothetical protein; Provisional
Probab=22.54 E-value=2.3e+02 Score=18.48 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=26.2
Q ss_pred hhHHHHHhhcCChHHHHHHHHHH----HHHHH----Hhhhceeee
Q 036617 5 LIPALDALNRKDVEGVINLLRRA----LQVLL----ARAVNIVIL 41 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~----~~~L~----~rg~~~vIL 41 (75)
++.++..+--|+...+.++|.+. +++|. ..|+|.||-
T Consensus 35 ~~a~lr~ivGG~~~~Y~~~l~~aR~~A~~rm~~~A~~lGAnAVVg 79 (103)
T PRK12855 35 LFASVRDVVGGRSGAYESKLKEARDIAMEEMKTLARQKNANAIVG 79 (103)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 56677778889988888877654 33443 348999884
No 135
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.25 E-value=85 Score=23.81 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhceeeeeccC
Q 036617 22 NLLRRALQVLLARAVNIVILASND 45 (75)
Q Consensus 22 ~ll~~~~~~L~~rg~~~vILaCTE 45 (75)
.=+..+++.|..+|+..|...||=
T Consensus 231 ~Tl~~aa~~Lk~~GA~~V~~~~tH 254 (320)
T PRK02269 231 GTICHAADALAEAGATEVYASCTH 254 (320)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEC
Confidence 337788889999999999998884
No 136
>PRK00239 rpsT 30S ribosomal protein S20; Reviewed
Probab=22.21 E-value=1.7e+02 Score=18.47 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=18.4
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHH
Q 036617 10 DALNRKDVEGVINLLRRALQVLLA 33 (75)
Q Consensus 10 yavKag~~~~a~~ll~~~~~~L~~ 33 (75)
.++..||.++|..+|..+...|-.
T Consensus 37 ~ai~~~~~~~a~~~~~~a~s~iDk 60 (88)
T PRK00239 37 AAIAAGDKEAAEEALKAAQSKIDK 60 (88)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH
Confidence 347789999999999877665543
No 137
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=22.08 E-value=85 Score=24.46 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhceeeeecc
Q 036617 24 LRRALQVLLARAVNIVILASN 44 (75)
Q Consensus 24 l~~~~~~L~~rg~~~vILaCT 44 (75)
+-.+.+.|..+||..|+.+||
T Consensus 230 i~~Aa~~Lk~~GAk~V~a~~t 250 (314)
T COG0462 230 IAKAAKALKERGAKKVYAAAT 250 (314)
T ss_pred HHHHHHHHHHCCCCeEEEEEE
Confidence 566788999999999999999
No 138
>PF03863 Phage_mat-A: Phage maturation protein; InterPro: IPR005563 This entry is represented by Bacteriophage MS2, Orf: MS2g1, the assembly/maturation protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The single-stranded RNA genome of bacteriophage MS2 is 3,569 nt long and contains 4 genes. Their products are necessary for phage maturation, encapsidation, lysis of the host, and phage RNA replication, respectively. The maturation protein is required for the typical attachment of the phage to the side of the bacterial pili. It accompanies the viral DNA into the cell.; GO: 0046718 entry of virus into host cell
Probab=22.03 E-value=1e+02 Score=24.99 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.7
Q ss_pred hhHHHHHhhcCChHHHHHHHHHH
Q 036617 5 LIPALDALNRKDVEGVINLLRRA 27 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~ 27 (75)
+..+..|+|+||+.+.+++++.-
T Consensus 159 l~kay~AvrrGd~rr~~~~i~~~ 181 (400)
T PF03863_consen 159 LVKAYRAVRRGDLRRLRRYIRSF 181 (400)
T ss_pred HHHHHHHHhcccHHHHHHHHHHh
Confidence 67788999999999999988744
No 139
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=21.95 E-value=2.7e+02 Score=19.21 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=35.2
Q ss_pred cCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCCC-----CCcccccCchHHHHHHH
Q 036617 14 RKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPD-----DPLLNKCIDPMDALVCS 70 (75)
Q Consensus 14 ag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~~-----~~~~~~~iD~tdaLara 70 (75)
-+|+++-.+-+...++.-..+|++.|++-=+=+|...+.+ .+....+.+....+++.
T Consensus 11 ~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~ 72 (253)
T cd07583 11 WGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKK 72 (253)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHH
Confidence 4778877777888888888889999996644444333321 22333444555555543
No 140
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=21.91 E-value=1.6e+02 Score=20.57 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=28.6
Q ss_pred hhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccC
Q 036617 12 LNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDL 49 (75)
Q Consensus 12 vKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~ 49 (75)
.+-||+++-.+-+...++....+|++.|++-=.-++..
T Consensus 9 ~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~ 46 (269)
T cd07586 9 PVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGY 46 (269)
T ss_pred CccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCC
Confidence 35678888888888888888889999999654444433
No 141
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=21.71 E-value=1.4e+02 Score=23.42 Aligned_cols=29 Identities=17% Similarity=0.482 Sum_probs=25.0
Q ss_pred cCChHHHHHHHHHHHHHHHHhhhceeeee
Q 036617 14 RKDVEGVINLLRRALQVLLARAVNIVILA 42 (75)
Q Consensus 14 ag~~~~a~~ll~~~~~~L~~rg~~~vILa 42 (75)
.-+.++..+.++++++.+.++|+|.++.=
T Consensus 140 ~~~~~el~~~~k~qle~~~~~gvD~L~fE 168 (317)
T KOG1579|consen 140 NVEFEELYDFFKQQLEVFLEAGVDLLAFE 168 (317)
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 34578899999999999999999998863
No 142
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=21.62 E-value=86 Score=22.34 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhceeeeecc
Q 036617 26 RALQVLLARAVNIVILASN 44 (75)
Q Consensus 26 ~~~~~L~~rg~~~vILaCT 44 (75)
+.++.++..|++++|+++-
T Consensus 91 edv~~~l~~Ga~~viigt~ 109 (233)
T cd04723 91 ENAQEWLKRGASRVIVGTE 109 (233)
T ss_pred HHHHHHHHcCCCeEEEcce
Confidence 5667788999999999763
No 143
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=21.55 E-value=1.2e+02 Score=22.73 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhceeee
Q 036617 22 NLLRRALQVLLARAVNIVIL 41 (75)
Q Consensus 22 ~ll~~~~~~L~~rg~~~vIL 41 (75)
+-++..+..|.+.|+|+||+
T Consensus 194 ~~~~~~v~~Lr~~gvD~II~ 213 (313)
T cd08162 194 EQIQPSIDALTAQGINKIIL 213 (313)
T ss_pred HHHHHHHHHHHHCCCCEEEE
Confidence 45788899999999999997
No 144
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=21.47 E-value=92 Score=20.88 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=11.9
Q ss_pred HHHHHHHhhhceee
Q 036617 27 ALQVLLARAVNIVI 40 (75)
Q Consensus 27 ~~~~L~~rg~~~vI 40 (75)
..+.|..+|+|++|
T Consensus 57 ~a~~l~~~gvdvvi 70 (121)
T COG1433 57 IAELLVDEGVDVVI 70 (121)
T ss_pred HHHHHHHcCCCEEE
Confidence 56888889999988
No 145
>PF13606 Ank_3: Ankyrin repeat
Probab=21.20 E-value=72 Score=15.75 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=8.1
Q ss_pred HHHHHHHHhhhce
Q 036617 26 RALQVLLARAVNI 38 (75)
Q Consensus 26 ~~~~~L~~rg~~~ 38 (75)
++++.|+.+|+|+
T Consensus 16 e~v~~Ll~~gadv 28 (30)
T PF13606_consen 16 EIVKYLLEHGADV 28 (30)
T ss_pred HHHHHHHHcCCCC
Confidence 3456666777764
No 146
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=21.14 E-value=1.7e+02 Score=17.17 Aligned_cols=27 Identities=26% Similarity=0.182 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhhceeeeeccC
Q 036617 19 GVINLLRRALQVLLARAVNIVILASND 45 (75)
Q Consensus 19 ~a~~ll~~~~~~L~~rg~~~vILaCTE 45 (75)
-|..+++...+.+..+|...+.+.|..
T Consensus 71 ~g~~ll~~~~~~~~~~~~~~i~~~~~~ 97 (131)
T TIGR01575 71 IGRALLRELIDEAKGRGVNEIFLEVRV 97 (131)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEec
Confidence 577888888898888898899887653
No 147
>cd03363 TOPRIM_TopoIA_TopoI TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=20.91 E-value=94 Score=20.24 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=12.4
Q ss_pred HHHHHHHhhhceeeeecc
Q 036617 27 ALQVLLARAVNIVILASN 44 (75)
Q Consensus 27 ~~~~L~~rg~~~vILaCT 44 (75)
.+..|. ++++-||+||+
T Consensus 65 ~ik~l~-~~~~eiiiAtD 81 (123)
T cd03363 65 ELKKLA-KKADEIYLATD 81 (123)
T ss_pred HHHHHH-hcCCEEEEcCC
Confidence 344444 68999999997
No 148
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.87 E-value=1.2e+02 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.6
Q ss_pred hhHHHHHhhcCChHHHHHHHHHHHHHH
Q 036617 5 LIPALDALNRKDVEGVINLLRRALQVL 31 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~~~~L 31 (75)
.+.|..++|.|++.+|++.+++.++.=
T Consensus 449 ~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 449 YVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 567888999999999999999988754
No 149
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=20.77 E-value=90 Score=22.67 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhceeeeecc
Q 036617 26 RALQVLLARAVNIVILASN 44 (75)
Q Consensus 26 ~~~~~L~~rg~~~vILaCT 44 (75)
+.++.++..|+++||+++.
T Consensus 87 e~~~~~l~~Ga~~vvigT~ 105 (243)
T TIGR01919 87 SSLRAALTGGRARVNGGTA 105 (243)
T ss_pred HHHHHHHHcCCCEEEECch
Confidence 4566788899999999875
No 150
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=20.77 E-value=1.4e+02 Score=20.19 Aligned_cols=32 Identities=6% Similarity=0.091 Sum_probs=26.5
Q ss_pred hhHHHHHhhcCChHHHHHHHHHHHHHHHHhhh
Q 036617 5 LIPALDALNRKDVEGVINLLRRALQVLLARAV 36 (75)
Q Consensus 5 vm~aIyavKag~~~~a~~ll~~~~~~L~~rg~ 36 (75)
+..|++.++.|+-+++...+..+++.+..-|.
T Consensus 172 f~~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~ 203 (220)
T TIGR01716 172 FLKGIILYKEGQKESGEEKIEQAIEIFDELGY 203 (220)
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHHcCC
Confidence 56788889999988888889999988887443
No 151
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=20.71 E-value=2e+02 Score=19.64 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=23.6
Q ss_pred HHHhh-cCChHHHHHHHHHHHHHHHHh-hhceee
Q 036617 9 LDALN-RKDVEGVINLLRRALQVLLAR-AVNIVI 40 (75)
Q Consensus 9 IyavK-ag~~~~a~~ll~~~~~~L~~r-g~~~vI 40 (75)
...++ +++++.|++.|...+..+... |.+++|
T Consensus 15 l~~~~~~~~l~~aR~~Li~~L~~y~~~~~~~v~V 48 (166)
T PF05991_consen 15 LRSLAERGDLEAARERLIEMLSEYAQFSGYEVIV 48 (166)
T ss_pred HHhhcCcCCHHHHHHHHHHHHHHHhcccCCEEEE
Confidence 44566 889999998888888777664 555544
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=20.67 E-value=1.4e+02 Score=15.08 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=14.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHH
Q 036617 8 ALDALNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 8 aIyavKag~~~~a~~ll~~~~~ 29 (75)
+...++.|+.++|...+...++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~ 28 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALE 28 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHh
Confidence 3444667777777777766543
No 153
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=20.60 E-value=93 Score=22.59 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhhceeeee
Q 036617 20 VINLLRRALQVLLARAVNIVILA 42 (75)
Q Consensus 20 a~~ll~~~~~~L~~rg~~~vILa 42 (75)
..+-+++.++.|...|||.||+-
T Consensus 167 ~~~~~~~~v~~lr~~~~D~II~l 189 (281)
T cd07409 167 EIEAAQKEADKLKAQGVNKIIAL 189 (281)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEE
Confidence 34457778888888899999863
No 154
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=20.54 E-value=1.6e+02 Score=15.95 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=16.8
Q ss_pred HHHHhhcCChHHHHHHHHHHHH
Q 036617 8 ALDALNRKDVEGVINLLRRALQ 29 (75)
Q Consensus 8 aIyavKag~~~~a~~ll~~~~~ 29 (75)
|.--++.|++++|...|..++.
T Consensus 36 a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 36 ARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4445788999999998887663
No 155
>COG2822 Predicted periplasmic lipoprotein involved in iron transport [Inorganic ion transport and metabolism]
Probab=20.46 E-value=54 Score=26.19 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=17.9
Q ss_pred HHhhcCChHHHHHHHHHHHHHHH
Q 036617 10 DALNRKDVEGVINLLRRALQVLL 32 (75)
Q Consensus 10 yavKag~~~~a~~ll~~~~~~L~ 32 (75)
.|||+||++.|..|.-....-+.
T Consensus 160 ~AVkagDiekAKalYa~~R~~YE 182 (376)
T COG2822 160 DAVKAGDIEKAKALYAKTRVHYE 182 (376)
T ss_pred HHHhcCcHHHHHhcccchhhhhH
Confidence 46999999999998876655443
No 156
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=20.44 E-value=1.1e+02 Score=21.16 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=19.5
Q ss_pred HHHHHHHhhhceeeeeccCccc
Q 036617 27 ALQVLLARAVNIVILASNDTLD 48 (75)
Q Consensus 27 ~~~~L~~rg~~~vILaCTEiPl 48 (75)
+++.+...|++.|+|+++.+|.
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~ 107 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDD 107 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCH
Confidence 6888999999999999998773
No 157
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.43 E-value=96 Score=22.30 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhceeeeecc
Q 036617 26 RALQVLLARAVNIVILASN 44 (75)
Q Consensus 26 ~~~~~L~~rg~~~vILaCT 44 (75)
+.++.++..|++++|+|+.
T Consensus 89 e~v~~~l~~Ga~kvvigt~ 107 (234)
T PRK13587 89 SQIMDYFAAGINYCIVGTK 107 (234)
T ss_pred HHHHHHHHCCCCEEEECch
Confidence 3456677889999999874
No 158
>PRK07534 methionine synthase I; Validated
Probab=20.32 E-value=1.6e+02 Score=22.54 Aligned_cols=27 Identities=7% Similarity=0.095 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHHHHHhhhceeeee
Q 036617 16 DVEGVINLLRRALQVLLARAVNIVILA 42 (75)
Q Consensus 16 ~~~~a~~ll~~~~~~L~~rg~~~vILa 42 (75)
+.+++.+.+..+++.|.+.|||.+++-
T Consensus 125 ~~~e~~~~~~~qi~~l~~~gvD~l~~E 151 (336)
T PRK07534 125 THALAVEAFHEQAEGLKAGGADVLWVE 151 (336)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 457899999999999999999999875
No 159
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=20.30 E-value=1.2e+02 Score=21.02 Aligned_cols=23 Identities=4% Similarity=0.271 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhceeeeeccCcc
Q 036617 25 RRALQVLLARAVNIVILASNDTL 47 (75)
Q Consensus 25 ~~~~~~L~~rg~~~vILaCTEiP 47 (75)
...++.+..+++|.+|+..++.|
T Consensus 81 ~~~i~~l~~~~vDgiIi~~~~~~ 103 (309)
T PRK11041 81 KTFVNLIITKQIDGMLLLGSRLP 103 (309)
T ss_pred HHHHHHHHHcCCCEEEEecCCCC
Confidence 35667788899999999877544
No 160
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=20.21 E-value=1.1e+02 Score=21.53 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhceeeeeccC
Q 036617 23 LLRRALQVLLARAVNIVILASND 45 (75)
Q Consensus 23 ll~~~~~~L~~rg~~~vILaCTE 45 (75)
=++.+++.+...++++||+.|..
T Consensus 168 d~~~~l~~i~~~~~d~Vi~~~~~ 190 (324)
T cd06368 168 MYRPLLKEIKREKERRIILDCSP 190 (324)
T ss_pred HHHHHHHHHhhccCceEEEECCH
Confidence 37788888999999999998853
No 161
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=20.12 E-value=2.1e+02 Score=21.13 Aligned_cols=18 Identities=33% Similarity=0.211 Sum_probs=13.9
Q ss_pred HHhhcCChHHHHHHHHHH
Q 036617 10 DALNRKDVEGVINLLRRA 27 (75)
Q Consensus 10 yavKag~~~~a~~ll~~~ 27 (75)
.++++||+++|+.+....
T Consensus 225 ~~~~~gd~~~A~~l~~~~ 242 (303)
T PRK03620 225 RALRAGDHATVDRLLDDF 242 (303)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 348999999998875543
Done!