BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036619
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 34/150 (22%)
Query: 214 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAK----AIIEGLGKS 269
+++ G+ G GK+ LA A + + C S + I K ++ L
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNL 202
Query: 270 ASGLNEFQSLMSRIQSSI-------------KGKKNFLVLDDVWDGDYNKWQPFFRCLKN 316
L++ +S R+ +I K ++ L+LDDVWD P+ LK
Sbjct: 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-------PWV--LKA 253
Query: 317 GLHGSKILVTTRNESVA-RMMGSTDIISIE 345
+ +IL+TTR++SV +MG ++ +E
Sbjct: 254 FDNQCQILLTTRDKSVTDSVMGPKHVVPVE 283
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 30/148 (20%)
Query: 214 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEK--VIWVCVSDTFDQIRIAKAIIEGLGKSAS 271
+++ G+ G GK+ LA A + + V WV V + ++ L +
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-----QDKSGLLMKLQNLCT 204
Query: 272 GLNEFQSLMSRIQSSI-------------KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL 318
L++ +S R+ +I K ++ L+LDDVWD W LK
Sbjct: 205 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----W-----VLKAFD 255
Query: 319 HGSKILVTTRNESVA-RMMGSTDIISIE 345
+IL+TTR++SV +MG ++ +E
Sbjct: 256 SQCQILLTTRDKSVTDSVMGPKYVVPVE 283
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 34/150 (22%)
Query: 214 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAK----AIIEGLGKS 269
+++ G+ G GK+ LA A + + C S + I K ++ L
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNL 209
Query: 270 ASGLNEFQSLMSRIQSSI-------------KGKKNFLVLDDVWDGDYNKWQPFFRCLKN 316
L++ +S R+ +I K ++ L+LDDVWD P+ LK
Sbjct: 210 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-------PWV--LKA 260
Query: 317 GLHGSKILVTTRNESVA-RMMGSTDIISIE 345
+ +IL+TT ++SV +MG ++ +E
Sbjct: 261 FDNQCQILLTTSDKSVTDSVMGPKHVVPVE 290
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 30/148 (20%)
Query: 214 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEK--VIWVCVSDTFDQIRIAKAIIEGLGKSAS 271
+++ G+ G GK+ LA A + + V WV V + ++ L +
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-----QDKSGLLMKLQNLCT 210
Query: 272 GLNEFQSLMSRIQSSI-------------KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL 318
L++ +S R+ +I K ++ L+LDDVWD W LK
Sbjct: 211 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----W-----VLKAFD 261
Query: 319 HGSKILVTTRNESVA-RMMGSTDIISIE 345
+IL+TTR++SV +MG ++ +E
Sbjct: 262 SQCQILLTTRDKSVTDSVMGPKYVVPVE 289
>pdb|1S70|A Chain A, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 330
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 235 DEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLN-EFQSL--MSRIQSSIKGKK 291
DE KR F +W +D F+ + IA + E + GL+ + QS+ + RI
Sbjct: 140 DECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPD 199
Query: 292 NFLVLDDVW---DGDYNKW 307
L+ D +W D D W
Sbjct: 200 TGLLCDLLWSDPDKDVQGW 218
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 4 AIVSSLLDQLNSIAQDQVKGKWRLVTGVEQEVGKLTTNLQAIQAVL----EDAEQRQMKQ 59
A +S+L+ +L + ++ ++L GV++ + L L++ A L E ++ Q
Sbjct: 1 AAISNLIPKLGELLTEE----FKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQ 56
Query: 60 DKAVTFWLDQLIDASYDMEDVLEEWITET 88
DK W D++ + SY +EDV+++++ +
Sbjct: 57 DK---LWADEVRELSYVIEDVVDKFLVQV 82
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 38/129 (29%)
Query: 144 EISEKLDDIARQKD-SFKLVENVSNNVKKPERVRTTSLIDEGEVCGRVDEKSELFSKLLC 202
E E+L+D+ Q D K+V VSN V+K + R TS E L
Sbjct: 35 EFFEELEDVLIQTDMGMKMVLKVSNLVRKKTK-RDTSF--------------ENIKDALV 79
Query: 203 ESSEQ-----------------QNGLQVISLVGLGGIGKTT-LAQLAYNNDEVKRNFEKV 244
ES Q +N L + LVG+ G GKTT LA++A E+
Sbjct: 80 ESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYK---- 135
Query: 245 IWVCVSDTF 253
+ + +DTF
Sbjct: 136 VLIAAADTF 144
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 199 KLLCESSEQQNGLQVISLVGLGGIGKTTLAQL 230
KL E E + G +VI +VG GIGKTT ++
Sbjct: 371 KLEVEPGEIRKG-EVIGIVGPNGIGKTTFVKM 401
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 199 KLLCESSEQQNGLQVISLVGLGGIGKTTLAQL 230
KL E E + G +VI +VG GIGKTT ++
Sbjct: 357 KLEVEPGEIRKG-EVIGIVGPNGIGKTTFVKM 387
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 199 KLLCESSEQQNGLQVISLVGLGGIGKTTLAQL 230
+L+ ++ E + G ++I ++G GIGKTT A++
Sbjct: 283 QLVVDNGEAKEG-EIIGILGPNGIGKTTFARI 313
>pdb|2RAD|A Chain A, Crystal Structure Of The Succinoglycan Biosynthesis
Protein. Northeast Structural Genomics Consortium Target
Bcr135
pdb|2RAD|B Chain B, Crystal Structure Of The Succinoglycan Biosynthesis
Protein. Northeast Structural Genomics Consortium Target
Bcr135
pdb|3B55|A Chain A, Crystal Structure Of The Q81bn2_baccr Protein From
Bacillus Cereus. Nesg Target Bcr135
Length = 451
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 258 IAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKKNF--LVLDDVWD 301
+ A I GLG++ G +E + RI + +K F LVL++ WD
Sbjct: 72 VGSASIVGLGEATHGAHEVFTXKHRIVKYLVSEKGFTNLVLEEGWD 117
>pdb|2F6R|A Chain A, Crystal Structure Of Bifunctional Coenzyme A Synthase (coa
Synthase): (18044849) From Mus Musculus At 1.70 A
Resolution
Length = 281
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 13/77 (16%)
Query: 159 FKLVENVSNNVKKPERVRTTSLIDE--GEVCGRVDEKSELFSKLLCESSEQQNGLQVISL 216
+L+++ S+N + ++V ++S G + +E+ EL S GL V+ L
Sbjct: 32 IQLLKDQSHNENEEDKVSSSSFRQRILGNLLQPPNERPELPS-----------GLYVLGL 80
Query: 217 VGLGGIGKTTLAQLAYN 233
G+ G GK+++AQ N
Sbjct: 81 TGISGSGKSSVAQRLKN 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,079,467
Number of Sequences: 62578
Number of extensions: 334134
Number of successful extensions: 1307
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1292
Number of HSP's gapped (non-prelim): 39
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)