Query 036619
Match_columns 352
No_of_seqs 315 out of 1941
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:51:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9.8E-39 2.1E-43 321.6 23.2 314 3-352 2-322 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 4.4E-28 9.6E-33 219.6 9.3 158 189-352 1-162 (287)
3 PLN03210 Resistant to P. syrin 99.8 2.3E-20 5E-25 197.2 15.1 159 182-352 182-356 (1153)
4 PRK00411 cdc6 cell division co 99.2 1.7E-10 3.6E-15 109.3 14.4 168 182-351 28-211 (394)
5 PF05729 NACHT: NACHT domain 99.2 1E-10 2.3E-15 96.6 10.6 134 212-351 1-154 (166)
6 TIGR02928 orc1/cdc6 family rep 99.1 1.5E-09 3.3E-14 101.6 13.9 117 184-302 15-141 (365)
7 PF13401 AAA_22: AAA domain; P 99.0 1.1E-09 2.4E-14 86.9 7.2 118 210-329 3-125 (131)
8 TIGR03015 pepcterm_ATPase puta 99.0 2E-08 4.3E-13 90.0 15.4 137 211-351 43-196 (269)
9 PF13173 AAA_14: AAA domain 99.0 3.5E-09 7.6E-14 83.8 8.8 118 212-351 3-126 (128)
10 COG2256 MGS1 ATPase related to 98.9 2E-09 4.4E-14 97.5 7.6 132 184-351 30-167 (436)
11 PF01637 Arch_ATPase: Archaeal 98.9 6.6E-10 1.4E-14 97.0 3.4 156 186-351 1-195 (234)
12 PF13191 AAA_16: AAA ATPase do 98.9 5.1E-09 1.1E-13 88.2 7.5 51 185-238 1-51 (185)
13 cd00009 AAA The AAA+ (ATPases 98.9 3.5E-08 7.5E-13 79.3 11.2 125 187-331 1-131 (151)
14 cd01128 rho_factor Transcripti 98.7 2E-08 4.3E-13 88.2 6.9 89 211-300 16-113 (249)
15 COG1474 CDC6 Cdc6-related prot 98.7 2.1E-07 4.5E-12 86.4 13.9 139 184-324 17-158 (366)
16 PRK04841 transcriptional regul 98.7 1.2E-07 2.7E-12 99.2 13.8 131 185-330 15-162 (903)
17 PRK06893 DNA replication initi 98.7 6E-08 1.3E-12 84.7 7.8 114 211-351 39-165 (229)
18 PRK09376 rho transcription ter 98.7 7.8E-08 1.7E-12 88.4 8.0 100 195-300 158-266 (416)
19 PRK13342 recombination factor 98.6 9E-08 2E-12 91.0 8.4 135 184-351 12-155 (413)
20 KOG2028 ATPase related to the 98.6 1.5E-07 3.3E-12 84.4 9.1 120 209-350 160-284 (554)
21 PTZ00202 tuzin; Provisional 98.6 5.7E-07 1.2E-11 83.5 12.7 160 179-351 257-425 (550)
22 PRK05564 DNA polymerase III su 98.6 3.1E-07 6.7E-12 84.2 10.9 146 184-351 4-156 (313)
23 TIGR02903 spore_lon_C ATP-depe 98.6 7.5E-06 1.6E-10 81.5 20.7 162 184-351 154-357 (615)
24 TIGR03420 DnaA_homol_Hda DnaA 98.6 3.9E-07 8.4E-12 79.4 10.2 128 191-351 24-163 (226)
25 PRK07003 DNA polymerase III su 98.5 6.1E-07 1.3E-11 88.7 11.2 156 184-351 16-182 (830)
26 PRK14961 DNA polymerase III su 98.5 1E-06 2.3E-11 82.3 12.2 156 184-351 16-182 (363)
27 PTZ00112 origin recognition co 98.5 1.3E-06 2.8E-11 87.2 13.3 142 183-325 754-905 (1164)
28 PRK12402 replication factor C 98.5 6.8E-07 1.5E-11 82.8 10.1 159 184-351 15-188 (337)
29 PRK14963 DNA polymerase III su 98.5 1E-07 2.2E-12 92.2 4.5 162 184-351 14-179 (504)
30 PRK14957 DNA polymerase III su 98.5 9.3E-07 2E-11 85.9 11.0 145 184-351 16-182 (546)
31 PLN03025 replication factor C 98.5 9.8E-07 2.1E-11 81.1 10.3 147 184-351 13-162 (319)
32 PRK12323 DNA polymerase III su 98.5 1E-06 2.2E-11 86.0 10.3 161 184-351 16-187 (700)
33 TIGR00767 rho transcription te 98.5 4.8E-07 1E-11 83.7 7.7 90 211-301 168-266 (415)
34 PRK14949 DNA polymerase III su 98.4 1.2E-06 2.7E-11 88.2 10.8 156 184-351 16-182 (944)
35 PRK13341 recombination factor 98.4 5.5E-07 1.2E-11 90.5 8.3 135 184-351 28-172 (725)
36 PRK00080 ruvB Holliday junctio 98.4 5.7E-07 1.2E-11 83.0 7.1 50 184-234 25-74 (328)
37 PRK14960 DNA polymerase III su 98.4 2.1E-06 4.6E-11 84.0 11.2 156 184-351 15-181 (702)
38 TIGR00635 ruvB Holliday juncti 98.4 1.1E-06 2.5E-11 80.1 8.7 153 184-351 4-163 (305)
39 COG2909 MalT ATP-dependent tra 98.4 8.1E-06 1.8E-10 80.9 14.9 130 193-330 24-170 (894)
40 PRK11331 5-methylcytosine-spec 98.4 1.8E-06 3.9E-11 81.2 9.9 120 184-315 175-298 (459)
41 PRK06645 DNA polymerase III su 98.4 3.2E-06 6.8E-11 81.7 11.9 159 184-351 21-191 (507)
42 PRK00440 rfc replication facto 98.4 3.9E-06 8.5E-11 77.1 11.7 145 184-351 17-165 (319)
43 PRK14962 DNA polymerase III su 98.4 2.9E-06 6.4E-11 81.5 10.9 145 184-351 14-180 (472)
44 PRK14955 DNA polymerase III su 98.3 2.1E-06 4.6E-11 81.2 9.5 163 184-351 16-190 (397)
45 PRK14951 DNA polymerase III su 98.3 3E-06 6.6E-11 83.4 10.5 159 184-351 16-187 (618)
46 PRK08084 DNA replication initi 98.3 6.1E-06 1.3E-10 72.3 11.3 114 211-351 45-171 (235)
47 PRK14958 DNA polymerase III su 98.3 3.5E-06 7.7E-11 81.8 10.0 156 184-351 16-182 (509)
48 PRK04195 replication factor C 98.3 5.1E-06 1.1E-10 80.7 11.1 143 184-350 14-163 (482)
49 PRK08727 hypothetical protein; 98.3 8E-06 1.7E-10 71.5 10.7 113 212-351 42-166 (233)
50 PRK14964 DNA polymerase III su 98.3 8.1E-06 1.8E-10 78.3 11.5 145 184-351 13-179 (491)
51 PRK07994 DNA polymerase III su 98.3 6.7E-06 1.4E-10 81.3 11.2 156 184-351 16-182 (647)
52 PRK07940 DNA polymerase III su 98.2 8.6E-06 1.9E-10 76.5 11.0 160 184-351 5-180 (394)
53 PRK07764 DNA polymerase III su 98.2 6.3E-06 1.4E-10 84.0 10.6 155 184-350 15-182 (824)
54 TIGR02397 dnaX_nterm DNA polym 98.2 1.5E-05 3.3E-10 74.4 12.4 144 184-351 14-180 (355)
55 PRK14956 DNA polymerase III su 98.2 3.2E-06 6.9E-11 80.3 7.8 155 184-350 18-183 (484)
56 PRK05896 DNA polymerase III su 98.2 4E-06 8.6E-11 81.8 8.0 156 184-351 16-182 (605)
57 PRK14954 DNA polymerase III su 98.2 1.6E-05 3.4E-10 78.7 11.8 163 184-351 16-190 (620)
58 PRK08903 DnaA regulatory inact 98.2 9.5E-06 2.1E-10 70.8 9.3 109 211-350 42-160 (227)
59 PRK08691 DNA polymerase III su 98.2 1.1E-05 2.5E-10 79.6 10.6 144 184-350 16-181 (709)
60 PF05621 TniB: Bacterial TniB 98.2 3.7E-05 8E-10 68.5 12.7 107 192-301 45-156 (302)
61 TIGR00678 holB DNA polymerase 98.2 2.8E-05 6.2E-10 65.7 11.6 64 288-351 94-159 (188)
62 PRK05642 DNA replication initi 98.2 2.1E-05 4.5E-10 68.9 10.9 114 211-351 45-170 (234)
63 PRK08116 hypothetical protein; 98.2 1.7E-05 3.7E-10 70.8 10.3 104 212-330 115-221 (268)
64 KOG2543 Origin recognition com 98.1 1.5E-05 3.3E-10 72.3 9.8 111 183-301 5-126 (438)
65 PRK14952 DNA polymerase III su 98.1 1.8E-05 3.9E-10 77.7 11.3 156 184-351 13-181 (584)
66 PRK07471 DNA polymerase III su 98.1 2.8E-05 6.1E-10 72.4 11.9 162 184-351 19-204 (365)
67 PF05496 RuvB_N: Holliday junc 98.1 8.7E-06 1.9E-10 69.4 7.7 50 184-234 24-73 (233)
68 PHA02544 44 clamp loader, smal 98.1 2.3E-05 5E-10 71.9 11.0 120 184-330 21-141 (316)
69 PRK09087 hypothetical protein; 98.1 8.8E-06 1.9E-10 70.8 7.6 104 211-351 44-157 (226)
70 PF00004 AAA: ATPase family as 98.1 1.3E-05 2.8E-10 63.2 8.0 96 214-329 1-111 (132)
71 PRK14969 DNA polymerase III su 98.1 2.9E-05 6.3E-10 75.9 11.9 155 184-350 16-181 (527)
72 PRK09111 DNA polymerase III su 98.1 2E-05 4.4E-10 77.8 10.8 159 184-351 24-195 (598)
73 KOG2227 Pre-initiation complex 98.1 2.1E-05 4.5E-10 73.2 9.8 117 183-301 149-267 (529)
74 PF05673 DUF815: Protein of un 98.1 2.7E-05 5.8E-10 67.3 9.7 109 182-317 25-134 (249)
75 PRK09112 DNA polymerase III su 98.1 3.1E-05 6.8E-10 71.7 10.5 160 183-351 22-204 (351)
76 PRK14970 DNA polymerase III su 98.1 3.2E-05 6.9E-10 72.6 10.8 145 184-351 17-171 (367)
77 PRK14950 DNA polymerase III su 98.0 1.9E-05 4E-10 78.4 9.3 156 184-350 16-182 (585)
78 PRK14959 DNA polymerase III su 98.0 3.4E-05 7.3E-10 75.8 10.8 156 184-351 16-182 (624)
79 PF04665 Pox_A32: Poxvirus A32 98.0 2.4E-05 5.2E-10 67.9 8.8 113 211-329 13-137 (241)
80 TIGR03345 VI_ClpV1 type VI sec 98.0 3.1E-05 6.8E-10 79.8 10.8 45 184-234 187-231 (852)
81 smart00382 AAA ATPases associa 98.0 4.2E-05 9.1E-10 60.5 9.3 88 212-303 3-91 (148)
82 CHL00095 clpC Clp protease ATP 98.0 5.6E-05 1.2E-09 78.1 12.4 45 184-234 179-223 (821)
83 PF13177 DNA_pol3_delta2: DNA 98.0 0.00013 2.9E-09 60.0 12.2 137 188-348 1-162 (162)
84 PF00308 Bac_DnaA: Bacterial d 98.0 4.7E-05 1E-09 65.9 9.8 147 185-350 10-169 (219)
85 PRK14965 DNA polymerase III su 98.0 3.8E-05 8.2E-10 76.0 10.4 155 184-350 16-181 (576)
86 TIGR01242 26Sp45 26S proteasom 98.0 2E-05 4.4E-10 73.8 8.0 51 184-234 122-179 (364)
87 PRK14971 DNA polymerase III su 98.0 6.6E-05 1.4E-09 74.6 12.0 144 184-351 17-184 (614)
88 TIGR02639 ClpA ATP-dependent C 98.0 3.8E-05 8.1E-10 78.4 10.3 45 184-234 182-226 (731)
89 CHL00181 cbbX CbbX; Provisiona 98.0 0.00015 3.3E-09 65.4 13.0 124 212-351 60-200 (287)
90 PRK07133 DNA polymerase III su 98.0 6.3E-05 1.4E-09 75.1 11.1 151 184-351 18-181 (725)
91 TIGR02880 cbbX_cfxQ probable R 98.0 6.8E-05 1.5E-09 67.6 10.3 123 213-351 60-199 (284)
92 TIGR02881 spore_V_K stage V sp 97.9 7.7E-05 1.7E-09 66.5 9.9 50 185-234 7-65 (261)
93 PRK14953 DNA polymerase III su 97.9 0.00013 2.8E-09 70.6 12.1 145 184-351 16-182 (486)
94 PRK08451 DNA polymerase III su 97.9 0.00013 2.8E-09 70.9 11.9 156 184-351 14-180 (535)
95 PRK14087 dnaA chromosomal repl 97.9 0.00011 2.4E-09 70.4 11.5 127 211-351 141-279 (450)
96 PRK06305 DNA polymerase III su 97.9 7.9E-05 1.7E-09 71.5 10.1 144 184-351 17-184 (451)
97 PRK06620 hypothetical protein; 97.9 3.3E-05 7.1E-10 66.6 6.8 99 212-351 45-151 (214)
98 TIGR00362 DnaA chromosomal rep 97.9 0.00022 4.8E-09 67.8 13.1 124 211-350 136-271 (405)
99 PRK10536 hypothetical protein; 97.9 0.00016 3.4E-09 63.3 10.9 133 184-328 55-211 (262)
100 PRK08181 transposase; Validate 97.9 8E-05 1.7E-09 66.3 9.2 100 212-330 107-209 (269)
101 PRK12422 chromosomal replicati 97.9 0.00012 2.7E-09 70.0 11.1 122 211-350 141-274 (445)
102 PRK07952 DNA replication prote 97.9 0.00042 9.1E-09 60.8 13.5 102 211-329 99-204 (244)
103 PRK08118 topology modulation p 97.8 8.2E-06 1.8E-10 67.5 2.3 34 213-246 3-37 (167)
104 PRK12377 putative replication 97.8 7E-05 1.5E-09 65.8 7.6 101 211-329 101-205 (248)
105 PRK06526 transposase; Provisio 97.8 7.7E-05 1.7E-09 66.0 7.9 100 212-330 99-201 (254)
106 PRK14948 DNA polymerase III su 97.8 0.00027 5.9E-09 70.3 12.1 157 184-350 16-183 (620)
107 PRK10787 DNA-binding ATP-depen 97.7 0.00062 1.4E-08 69.6 14.3 50 184-233 322-371 (784)
108 KOG0989 Replication factor C, 97.7 8.1E-05 1.8E-09 65.8 6.8 150 184-350 36-191 (346)
109 PRK14086 dnaA chromosomal repl 97.7 0.0006 1.3E-08 66.9 13.5 123 212-350 315-449 (617)
110 PRK08058 DNA polymerase III su 97.7 0.00024 5.1E-09 65.5 10.3 154 186-351 7-173 (329)
111 PRK00149 dnaA chromosomal repl 97.7 0.00043 9.3E-09 66.8 12.3 122 211-350 148-283 (450)
112 PRK10865 protein disaggregatio 97.7 0.0002 4.3E-09 74.1 10.6 45 184-234 178-222 (857)
113 PRK06921 hypothetical protein; 97.7 0.00027 5.9E-09 63.0 10.1 100 211-329 117-224 (266)
114 PRK14088 dnaA chromosomal repl 97.7 0.00022 4.8E-09 68.3 10.1 124 211-350 130-266 (440)
115 PF01695 IstB_IS21: IstB-like 97.7 5.1E-05 1.1E-09 63.5 5.0 101 211-330 47-150 (178)
116 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00023 4.9E-09 73.9 10.8 137 184-329 565-717 (852)
117 PRK11034 clpA ATP-dependent Cl 97.7 0.00023 5E-09 72.3 10.5 45 184-234 186-230 (758)
118 PRK05563 DNA polymerase III su 97.7 0.00045 9.7E-09 68.2 12.3 155 184-350 16-181 (559)
119 COG1373 Predicted ATPase (AAA+ 97.7 0.00023 5E-09 67.3 9.8 113 213-350 39-157 (398)
120 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00016 3.5E-09 74.6 9.4 136 184-329 566-718 (852)
121 PRK03992 proteasome-activating 97.7 0.00011 2.4E-09 69.4 7.6 51 184-234 131-188 (389)
122 PRK09183 transposase/IS protei 97.7 0.00032 6.9E-09 62.4 10.0 101 212-330 103-206 (259)
123 PRK10865 protein disaggregatio 97.7 0.00027 5.9E-09 73.2 10.8 138 184-329 568-720 (857)
124 PRK06647 DNA polymerase III su 97.7 0.00048 1E-08 67.8 12.0 155 184-350 16-181 (563)
125 TIGR03346 chaperone_ClpB ATP-d 97.7 0.0002 4.4E-09 74.3 9.8 45 184-234 173-217 (852)
126 TIGR02639 ClpA ATP-dependent C 97.7 0.00027 5.8E-09 72.2 10.5 121 184-317 454-580 (731)
127 PRK08939 primosomal protein Dn 97.7 0.00034 7.5E-09 63.6 10.1 101 211-329 156-260 (306)
128 COG2607 Predicted ATPase (AAA+ 97.7 0.00039 8.5E-09 59.5 9.6 120 183-329 59-182 (287)
129 COG3899 Predicted ATPase [Gene 97.6 0.00036 7.7E-09 72.1 10.9 47 185-234 1-47 (849)
130 PRK07261 topology modulation p 97.6 0.00015 3.3E-09 60.2 6.8 54 213-266 2-56 (171)
131 PRK07399 DNA polymerase III su 97.6 0.00058 1.3E-08 62.4 11.1 162 184-351 4-186 (314)
132 PF02562 PhoH: PhoH-like prote 97.6 0.00041 8.9E-09 58.9 9.2 131 188-330 4-156 (205)
133 TIGR00763 lon ATP-dependent pr 97.6 0.002 4.4E-08 66.3 15.8 51 184-234 320-370 (775)
134 COG0470 HolB ATPase involved i 97.6 0.0006 1.3E-08 62.6 11.0 142 185-346 2-167 (325)
135 COG1875 NYN ribonuclease and A 97.6 0.00029 6.3E-09 63.8 8.4 131 187-328 227-386 (436)
136 PRK04296 thymidine kinase; Pro 97.6 0.00024 5.2E-09 60.1 7.6 111 212-329 3-115 (190)
137 PRK05707 DNA polymerase III su 97.6 0.00056 1.2E-08 62.8 10.5 63 289-351 105-169 (328)
138 COG0466 Lon ATP-dependent Lon 97.6 0.00066 1.4E-08 66.6 11.1 106 183-302 322-429 (782)
139 CHL00095 clpC Clp protease ATP 97.6 0.0004 8.7E-09 71.8 10.0 136 184-329 509-661 (821)
140 TIGR02237 recomb_radB DNA repa 97.5 0.00049 1.1E-08 59.1 8.9 88 209-300 10-107 (209)
141 PRK05541 adenylylsulfate kinas 97.5 0.0007 1.5E-08 56.5 9.5 37 209-247 5-41 (176)
142 PRK12608 transcription termina 97.5 0.00081 1.8E-08 62.1 10.1 102 192-299 119-229 (380)
143 PRK13695 putative NTPase; Prov 97.5 9.8E-05 2.1E-09 61.6 3.9 34 213-247 2-35 (174)
144 smart00763 AAA_PrkA PrkA AAA d 97.5 9.4E-05 2E-09 67.9 4.0 50 185-234 52-101 (361)
145 PRK11889 flhF flagellar biosyn 97.5 0.0018 3.8E-08 60.3 12.2 25 210-234 240-264 (436)
146 COG1484 DnaC DNA replication p 97.5 0.00044 9.5E-09 61.2 8.0 81 211-308 105-185 (254)
147 PRK06835 DNA replication prote 97.5 0.00072 1.6E-08 62.1 9.6 102 212-329 184-288 (329)
148 PF07728 AAA_5: AAA domain (dy 97.5 5.6E-05 1.2E-09 60.4 2.1 90 214-316 2-91 (139)
149 PRK09361 radB DNA repair and r 97.5 0.00092 2E-08 58.1 9.9 88 209-300 21-117 (225)
150 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.0012 2.6E-08 57.7 10.5 91 209-300 17-125 (235)
151 PF00910 RNA_helicase: RNA hel 97.4 0.00037 8.1E-09 53.0 6.2 21 214-234 1-21 (107)
152 COG0593 DnaA ATPase involved i 97.4 0.0029 6.4E-08 59.2 13.1 148 184-350 88-247 (408)
153 TIGR00602 rad24 checkpoint pro 97.4 0.00034 7.3E-09 69.4 7.3 50 184-234 84-133 (637)
154 PHA00729 NTP-binding motif con 97.4 0.0018 3.8E-08 55.8 10.6 24 211-234 17-40 (226)
155 cd01393 recA_like RecA is a b 97.4 0.0015 3.2E-08 56.8 10.3 90 209-301 17-125 (226)
156 KOG2004 Mitochondrial ATP-depe 97.4 0.0026 5.6E-08 62.6 12.5 107 183-301 410-516 (906)
157 PF08423 Rad51: Rad51; InterP 97.4 0.00097 2.1E-08 59.2 9.1 89 210-299 37-142 (256)
158 TIGR02238 recomb_DMC1 meiotic 97.4 0.0012 2.5E-08 60.3 9.5 91 209-300 94-201 (313)
159 PRK11034 clpA ATP-dependent Cl 97.4 0.00082 1.8E-08 68.4 9.2 123 184-317 458-584 (758)
160 COG0542 clpA ATP-binding subun 97.4 0.0005 1.1E-08 69.0 7.4 122 184-317 491-620 (786)
161 cd01120 RecA-like_NTPases RecA 97.4 0.0017 3.7E-08 52.8 9.6 40 213-254 1-40 (165)
162 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0013 2.7E-08 58.7 9.3 110 213-330 23-161 (262)
163 cd03247 ABCC_cytochrome_bd The 97.3 0.0018 3.9E-08 54.1 9.5 118 211-334 28-161 (178)
164 PF13207 AAA_17: AAA domain; P 97.3 0.0002 4.4E-09 55.6 3.4 22 213-234 1-22 (121)
165 PRK12724 flagellar biosynthesi 97.3 0.0025 5.5E-08 59.8 10.8 25 210-234 222-246 (432)
166 COG2884 FtsE Predicted ATPase 97.3 0.0043 9.4E-08 51.4 10.8 63 276-338 141-205 (223)
167 cd01131 PilT Pilus retraction 97.3 0.00084 1.8E-08 57.2 7.1 111 212-334 2-113 (198)
168 cd01394 radB RadB. The archaea 97.3 0.0013 2.8E-08 56.9 8.4 88 209-300 17-113 (218)
169 PF00448 SRP54: SRP54-type pro 97.2 0.002 4.3E-08 54.7 8.8 55 211-267 1-56 (196)
170 PLN03187 meiotic recombination 97.2 0.0026 5.6E-08 58.6 10.1 91 209-300 124-231 (344)
171 cd03214 ABC_Iron-Siderophores_ 97.2 0.0048 1E-07 51.6 11.1 121 211-335 25-163 (180)
172 TIGR03499 FlhF flagellar biosy 97.2 0.0024 5.1E-08 57.6 9.7 88 210-299 193-281 (282)
173 cd03238 ABC_UvrA The excision 97.2 0.0023 4.9E-08 53.4 8.8 122 211-344 21-161 (176)
174 COG1136 SalX ABC-type antimicr 97.2 0.0056 1.2E-07 52.7 11.2 60 277-336 147-209 (226)
175 cd00983 recA RecA is a bacter 97.2 0.0016 3.5E-08 59.3 8.4 85 209-300 53-143 (325)
176 cd03223 ABCD_peroxisomal_ALDP 97.2 0.0044 9.6E-08 51.1 10.4 125 211-344 27-160 (166)
177 cd03228 ABCC_MRP_Like The MRP 97.2 0.0028 6E-08 52.6 9.2 128 211-344 28-167 (171)
178 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0013 2.7E-08 56.8 7.2 121 211-336 29-160 (213)
179 KOG1969 DNA replication checkp 97.2 0.0014 3E-08 64.5 8.0 89 209-315 324-412 (877)
180 PRK06871 DNA polymerase III su 97.2 0.0043 9.4E-08 56.8 10.8 147 193-351 11-170 (325)
181 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0046 1E-07 50.4 9.8 117 212-331 3-139 (159)
182 TIGR02239 recomb_RAD51 DNA rep 97.2 0.0042 9.1E-08 56.9 10.7 91 209-300 94-201 (316)
183 PLN03186 DNA repair protein RA 97.2 0.0034 7.3E-08 57.9 10.1 91 209-300 121-228 (342)
184 PTZ00454 26S protease regulato 97.1 0.00081 1.8E-08 63.4 6.1 51 184-234 145-202 (398)
185 COG2255 RuvB Holliday junction 97.1 0.0004 8.7E-09 60.9 3.7 50 184-234 26-75 (332)
186 cd01133 F1-ATPase_beta F1 ATP 97.1 0.0035 7.7E-08 55.6 9.6 87 211-299 69-172 (274)
187 TIGR03689 pup_AAA proteasome A 97.1 0.0011 2.3E-08 64.2 6.9 51 184-234 182-239 (512)
188 PRK06696 uridine kinase; Valid 97.1 0.00056 1.2E-08 59.5 4.6 43 189-234 3-45 (223)
189 PRK06090 DNA polymerase III su 97.1 0.0066 1.4E-07 55.4 11.6 146 192-351 11-171 (319)
190 COG2812 DnaX DNA polymerase II 97.1 0.00053 1.1E-08 66.0 4.5 155 184-350 16-181 (515)
191 PRK14722 flhF flagellar biosyn 97.1 0.0029 6.3E-08 58.9 9.1 90 211-302 137-227 (374)
192 PRK04301 radA DNA repair and r 97.1 0.0055 1.2E-07 56.3 10.9 91 209-300 100-208 (317)
193 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0052 1.1E-07 49.4 9.5 106 211-335 26-132 (144)
194 PF13604 AAA_30: AAA domain; P 97.1 0.00058 1.3E-08 58.1 4.0 105 212-328 19-129 (196)
195 TIGR02012 tigrfam_recA protein 97.1 0.0024 5.1E-08 58.2 8.2 85 209-300 53-143 (321)
196 PRK12723 flagellar biosynthesi 97.1 0.0094 2E-07 55.9 12.3 104 210-316 173-282 (388)
197 PF07693 KAP_NTPase: KAP famil 97.1 0.011 2.4E-07 54.3 12.8 41 192-235 4-44 (325)
198 PRK05703 flhF flagellar biosyn 97.1 0.0082 1.8E-07 57.2 12.0 88 211-301 221-310 (424)
199 PRK06964 DNA polymerase III su 97.1 0.0061 1.3E-07 56.2 10.8 64 288-351 130-195 (342)
200 PRK15455 PrkA family serine pr 97.1 0.00043 9.2E-09 67.1 3.3 49 185-233 77-125 (644)
201 PF13671 AAA_33: AAA domain; P 97.0 0.0022 4.7E-08 51.3 6.9 22 213-234 1-22 (143)
202 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0042 9.1E-08 51.8 8.8 104 211-335 25-137 (177)
203 PF14532 Sigma54_activ_2: Sigm 97.0 0.00063 1.4E-08 54.3 3.5 108 187-330 1-110 (138)
204 PF00158 Sigma54_activat: Sigm 97.0 0.0019 4.2E-08 53.4 6.5 133 186-330 1-144 (168)
205 PRK06067 flagellar accessory p 97.0 0.0035 7.6E-08 54.8 8.5 87 209-300 23-130 (234)
206 PTZ00035 Rad51 protein; Provis 97.0 0.0066 1.4E-07 56.1 10.6 92 209-301 116-224 (337)
207 PRK00771 signal recognition pa 97.0 0.014 3.1E-07 55.6 13.0 56 210-268 94-151 (437)
208 COG0542 clpA ATP-binding subun 97.0 0.0017 3.7E-08 65.3 7.0 126 184-330 170-310 (786)
209 cd03246 ABCC_Protease_Secretio 97.0 0.0042 9E-08 51.6 8.4 120 211-334 28-160 (173)
210 CHL00176 ftsH cell division pr 97.0 0.003 6.4E-08 63.2 8.6 98 184-301 183-286 (638)
211 PRK08699 DNA polymerase III su 97.0 0.0045 9.8E-08 56.8 9.2 63 289-351 112-176 (325)
212 PRK08769 DNA polymerase III su 97.0 0.0076 1.6E-07 55.1 10.5 64 288-351 111-176 (319)
213 cd03216 ABC_Carb_Monos_I This 97.0 0.0048 1E-07 50.8 8.5 117 211-334 26-146 (163)
214 TIGR00959 ffh signal recogniti 97.0 0.0089 1.9E-07 56.8 11.3 25 210-234 98-122 (428)
215 cd03282 ABC_MSH4_euk MutS4 hom 97.0 0.0046 9.9E-08 52.9 8.5 121 211-338 29-159 (204)
216 PRK09354 recA recombinase A; P 97.0 0.0043 9.4E-08 57.1 8.7 85 209-300 58-148 (349)
217 PRK12727 flagellar biosynthesi 96.9 0.0056 1.2E-07 59.1 9.7 25 210-234 349-373 (559)
218 PRK10867 signal recognition pa 96.9 0.01 2.3E-07 56.4 11.5 25 209-233 98-122 (433)
219 TIGR01817 nifA Nif-specific re 96.9 0.0044 9.5E-08 61.2 9.0 135 183-330 195-341 (534)
220 COG4608 AppF ABC-type oligopep 96.9 0.009 1.9E-07 52.5 9.8 125 211-338 39-178 (268)
221 PRK15429 formate hydrogenlyase 96.9 0.0041 8.9E-08 63.3 9.0 134 184-330 376-521 (686)
222 TIGR01241 FtsH_fam ATP-depende 96.9 0.0066 1.4E-07 59.3 9.9 51 184-234 55-111 (495)
223 COG0468 RecA RecA/RadA recombi 96.9 0.0077 1.7E-07 53.7 9.4 90 209-301 58-152 (279)
224 TIGR02236 recomb_radA DNA repa 96.9 0.007 1.5E-07 55.4 9.5 92 209-301 93-203 (310)
225 cd02025 PanK Pantothenate kina 96.9 0.0062 1.3E-07 52.7 8.6 22 213-234 1-22 (220)
226 cd03230 ABC_DR_subfamily_A Thi 96.9 0.01 2.3E-07 49.2 9.7 119 211-335 26-160 (173)
227 PF00485 PRK: Phosphoribulokin 96.8 0.0066 1.4E-07 51.5 8.5 22 213-234 1-22 (194)
228 PRK14974 cell division protein 96.8 0.017 3.6E-07 53.2 11.6 56 210-268 139-196 (336)
229 KOG1514 Origin recognition com 96.8 0.012 2.6E-07 57.9 11.0 142 184-327 396-546 (767)
230 PRK11608 pspF phage shock prot 96.8 0.0041 8.9E-08 57.3 7.5 134 185-330 7-151 (326)
231 PRK12726 flagellar biosynthesi 96.8 0.016 3.4E-07 53.8 11.2 91 209-301 204-296 (407)
232 cd03115 SRP The signal recogni 96.8 0.014 3E-07 48.4 10.1 22 213-234 2-23 (173)
233 PRK07667 uridine kinase; Provi 96.8 0.002 4.4E-08 54.6 5.0 38 193-234 3-40 (193)
234 PRK09270 nucleoside triphospha 96.8 0.0071 1.5E-07 52.8 8.4 26 209-234 31-56 (229)
235 TIGR00554 panK_bact pantothena 96.8 0.011 2.4E-07 53.3 9.6 25 209-233 60-84 (290)
236 PF07724 AAA_2: AAA domain (Cd 96.7 0.001 2.2E-08 55.1 2.7 88 211-316 3-105 (171)
237 PTZ00361 26 proteosome regulat 96.7 0.0016 3.5E-08 62.0 4.2 51 184-234 183-240 (438)
238 cd01125 repA Hexameric Replica 96.7 0.013 2.7E-07 51.5 9.5 22 213-234 3-24 (239)
239 KOG0741 AAA+-type ATPase [Post 96.7 0.017 3.6E-07 55.2 10.6 122 209-349 536-674 (744)
240 PRK07993 DNA polymerase III su 96.7 0.015 3.3E-07 53.6 10.2 147 192-351 10-171 (334)
241 TIGR03877 thermo_KaiC_1 KaiC d 96.7 0.013 2.9E-07 51.3 9.5 114 209-329 19-170 (237)
242 COG1124 DppF ABC-type dipeptid 96.7 0.026 5.7E-07 48.7 10.8 57 282-338 151-210 (252)
243 TIGR01243 CDC48 AAA family ATP 96.7 0.0037 8E-08 64.1 6.7 51 184-234 178-235 (733)
244 TIGR02858 spore_III_AA stage I 96.7 0.041 8.8E-07 49.1 12.4 129 192-335 97-234 (270)
245 PRK08533 flagellar accessory p 96.7 0.021 4.5E-07 49.9 10.4 49 210-262 23-71 (230)
246 PRK05439 pantothenate kinase; 96.7 0.016 3.5E-07 52.6 9.9 25 209-233 84-108 (311)
247 PF13238 AAA_18: AAA domain; P 96.7 0.0016 3.5E-08 50.8 3.2 21 214-234 1-21 (129)
248 cd03215 ABC_Carb_Monos_II This 96.7 0.027 5.9E-07 47.1 10.8 53 283-335 115-169 (182)
249 PTZ00301 uridine kinase; Provi 96.7 0.0031 6.7E-08 54.1 5.1 24 211-234 3-26 (210)
250 TIGR00235 udk uridine kinase. 96.6 0.0019 4.1E-08 55.5 3.8 26 209-234 4-29 (207)
251 PHA02244 ATPase-like protein 96.6 0.0084 1.8E-07 55.4 8.1 21 214-234 122-142 (383)
252 cd03369 ABCC_NFT1 Domain 2 of 96.6 0.04 8.7E-07 47.1 12.0 53 283-335 136-189 (207)
253 COG0396 sufC Cysteine desulfur 96.6 0.028 6.2E-07 48.1 10.6 66 277-342 149-216 (251)
254 PRK05480 uridine/cytidine kina 96.6 0.0019 4.2E-08 55.4 3.7 26 209-234 4-29 (209)
255 PRK06731 flhF flagellar biosyn 96.6 0.024 5.2E-07 50.5 10.6 103 211-315 75-181 (270)
256 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.02 4.3E-07 50.2 9.8 124 211-334 30-203 (254)
257 smart00534 MUTSac ATPase domai 96.6 0.0036 7.9E-08 52.7 5.2 119 213-337 1-129 (185)
258 TIGR02974 phageshock_pspF psp 96.6 0.0084 1.8E-07 55.3 7.9 131 186-329 1-143 (329)
259 PRK05022 anaerobic nitric oxid 96.6 0.0079 1.7E-07 59.0 8.2 134 183-330 186-332 (509)
260 PRK05917 DNA polymerase III su 96.6 0.042 9.1E-07 49.4 12.0 61 288-348 93-155 (290)
261 PRK04132 replication factor C 96.6 0.014 3.1E-07 59.8 10.0 116 219-350 574-692 (846)
262 PRK08233 hypothetical protein; 96.6 0.002 4.4E-08 53.8 3.4 24 211-234 3-26 (182)
263 PRK14721 flhF flagellar biosyn 96.6 0.021 4.6E-07 54.1 10.4 39 210-248 190-228 (420)
264 cd03240 ABC_Rad50 The catalyti 96.6 0.023 4.9E-07 48.6 9.8 61 283-345 132-196 (204)
265 PF12775 AAA_7: P-loop contain 96.5 0.0021 4.6E-08 57.5 3.5 96 194-308 23-118 (272)
266 COG0572 Udk Uridine kinase [Nu 96.5 0.0066 1.4E-07 51.8 6.2 26 209-234 6-31 (218)
267 KOG0733 Nuclear AAA ATPase (VC 96.5 0.0099 2.1E-07 57.6 8.0 98 184-301 190-293 (802)
268 cd03235 ABC_Metallic_Cations A 96.5 0.034 7.4E-07 47.8 10.9 24 211-234 25-48 (213)
269 KOG1532 GTPase XAB1, interacts 96.5 0.019 4.2E-07 50.3 9.0 27 209-235 17-43 (366)
270 TIGR03881 KaiC_arch_4 KaiC dom 96.5 0.026 5.7E-07 49.1 10.3 116 209-329 18-165 (229)
271 cd00984 DnaB_C DnaB helicase C 96.5 0.069 1.5E-06 46.8 13.0 117 210-329 12-172 (242)
272 PF12061 DUF3542: Protein of u 96.5 0.0069 1.5E-07 53.8 6.3 77 4-85 296-373 (402)
273 KOG2228 Origin recognition com 96.5 0.031 6.7E-07 50.5 10.5 143 184-331 24-183 (408)
274 COG1618 Predicted nucleotide k 96.5 0.0035 7.6E-08 50.5 4.1 24 211-234 5-28 (179)
275 PRK00889 adenylylsulfate kinas 96.5 0.032 6.9E-07 46.3 10.2 25 210-234 3-27 (175)
276 TIGR00064 ftsY signal recognit 96.5 0.023 4.9E-07 50.9 9.8 40 209-250 70-109 (272)
277 PLN00020 ribulose bisphosphate 96.5 0.0058 1.2E-07 56.3 6.0 26 209-234 146-171 (413)
278 TIGR01425 SRP54_euk signal rec 96.5 0.026 5.7E-07 53.5 10.6 25 210-234 99-123 (429)
279 cd01122 GP4d_helicase GP4d_hel 96.5 0.048 1E-06 48.7 12.0 117 211-330 30-191 (271)
280 PRK06995 flhF flagellar biosyn 96.5 0.019 4.2E-07 55.3 9.8 39 211-249 256-294 (484)
281 PTZ00088 adenylate kinase 1; P 96.5 0.0037 7.9E-08 54.4 4.5 22 213-234 8-29 (229)
282 cd03229 ABC_Class3 This class 96.5 0.012 2.6E-07 49.1 7.5 118 211-335 26-166 (178)
283 cd03244 ABCC_MRP_domain2 Domai 96.5 0.038 8.2E-07 47.8 10.8 53 283-335 150-203 (221)
284 PRK13539 cytochrome c biogenes 96.5 0.031 6.7E-07 47.9 10.2 66 283-351 138-205 (207)
285 cd03263 ABC_subfamily_A The AB 96.5 0.034 7.3E-07 48.0 10.5 53 283-335 144-197 (220)
286 PF00154 RecA: recA bacterial 96.5 0.014 3E-07 53.2 8.2 86 209-301 51-142 (322)
287 PRK14723 flhF flagellar biosyn 96.5 0.021 4.6E-07 57.7 10.3 87 211-300 185-273 (767)
288 COG0563 Adk Adenylate kinase a 96.4 0.009 1.9E-07 49.9 6.5 22 213-234 2-23 (178)
289 COG4618 ArpD ABC-type protease 96.4 0.018 3.9E-07 54.7 9.1 55 281-335 481-537 (580)
290 cd03213 ABCG_EPDR ABCG transpo 96.4 0.033 7.2E-07 47.2 10.1 118 211-331 35-172 (194)
291 cd03283 ABC_MutS-like MutS-lik 96.4 0.0091 2E-07 50.8 6.6 23 212-234 26-48 (199)
292 PF03205 MobB: Molybdopterin g 96.4 0.0067 1.4E-07 48.5 5.4 39 212-251 1-39 (140)
293 PRK09519 recA DNA recombinatio 96.4 0.014 3E-07 59.3 8.8 85 209-300 58-148 (790)
294 KOG0735 AAA+-type ATPase [Post 96.4 0.018 3.9E-07 56.8 9.1 73 210-300 430-504 (952)
295 TIGR00708 cobA cob(I)alamin ad 96.4 0.049 1.1E-06 45.0 10.4 119 211-330 5-140 (173)
296 PRK06762 hypothetical protein; 96.4 0.0029 6.4E-08 52.1 3.3 24 211-234 2-25 (166)
297 cd00267 ABC_ATPase ABC (ATP-bi 96.4 0.012 2.6E-07 47.9 6.9 117 212-336 26-146 (157)
298 cd03254 ABCC_Glucan_exporter_l 96.4 0.042 9.2E-07 47.8 10.8 54 282-335 149-203 (229)
299 PRK09544 znuC high-affinity zi 96.4 0.031 6.7E-07 49.5 9.9 24 211-234 30-53 (251)
300 PRK04328 hypothetical protein; 96.4 0.016 3.4E-07 51.3 7.9 114 209-329 21-172 (249)
301 TIGR03878 thermo_KaiC_2 KaiC d 96.4 0.016 3.4E-07 51.6 7.9 42 209-252 34-75 (259)
302 PF08298 AAA_PrkA: PrkA AAA do 96.4 0.0041 9E-08 56.8 4.2 50 184-233 61-110 (358)
303 cd03232 ABC_PDR_domain2 The pl 96.4 0.025 5.4E-07 47.8 8.9 23 211-233 33-55 (192)
304 cd02019 NK Nucleoside/nucleoti 96.4 0.003 6.4E-08 43.8 2.6 22 213-234 1-22 (69)
305 PF03969 AFG1_ATPase: AFG1-lik 96.4 0.0087 1.9E-07 55.7 6.5 103 209-330 60-167 (362)
306 cd03217 ABC_FeS_Assembly ABC-t 96.4 0.027 5.8E-07 48.0 9.1 120 211-335 26-169 (200)
307 cd03243 ABC_MutS_homologs The 96.3 0.0099 2.1E-07 50.7 6.4 121 212-337 30-158 (202)
308 cd01121 Sms Sms (bacterial rad 96.3 0.032 7E-07 52.2 10.2 84 210-301 81-169 (372)
309 cd02027 APSK Adenosine 5'-phos 96.3 0.047 1E-06 44.1 10.0 22 213-234 1-22 (149)
310 cd03264 ABC_drug_resistance_li 96.3 0.015 3.1E-07 50.0 7.3 54 282-335 140-194 (211)
311 cd03251 ABCC_MsbA MsbA is an e 96.3 0.084 1.8E-06 46.0 12.2 53 283-335 149-202 (234)
312 cd02028 UMPK_like Uridine mono 96.3 0.0088 1.9E-07 50.0 5.7 22 213-234 1-22 (179)
313 KOG2170 ATPase of the AAA+ sup 96.3 0.018 3.8E-07 51.2 7.6 113 184-315 82-203 (344)
314 TIGR01420 pilT_fam pilus retra 96.3 0.015 3.4E-07 53.9 7.7 112 211-333 122-233 (343)
315 cd03253 ABCC_ATM1_transporter 96.3 0.054 1.2E-06 47.3 10.8 54 282-335 147-201 (236)
316 cd03298 ABC_ThiQ_thiamine_tran 96.3 0.025 5.4E-07 48.5 8.5 53 283-335 139-194 (211)
317 KOG0991 Replication factor C, 96.3 0.011 2.5E-07 50.5 6.0 44 184-233 27-70 (333)
318 COG1102 Cmk Cytidylate kinase 96.3 0.011 2.4E-07 47.7 5.6 44 213-269 2-45 (179)
319 TIGR03740 galliderm_ABC gallid 96.3 0.061 1.3E-06 46.6 10.9 53 283-335 135-189 (223)
320 PRK03839 putative kinase; Prov 96.3 0.0037 7.9E-08 52.3 3.1 22 213-234 2-23 (180)
321 TIGR01360 aden_kin_iso1 adenyl 96.2 0.0037 8E-08 52.5 3.2 24 211-234 3-26 (188)
322 KOG0924 mRNA splicing factor A 96.2 0.063 1.4E-06 52.8 11.6 132 193-338 361-521 (1042)
323 PRK06547 hypothetical protein; 96.2 0.0046 9.9E-08 51.3 3.6 26 209-234 13-38 (172)
324 KOG0734 AAA+-type ATPase conta 96.2 0.015 3.1E-07 55.6 7.1 52 184-235 304-361 (752)
325 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.045 9.8E-07 48.3 10.0 126 211-336 25-182 (246)
326 PF14516 AAA_35: AAA-like doma 96.2 0.08 1.7E-06 48.9 12.1 109 184-301 11-138 (331)
327 KOG1051 Chaperone HSP104 and r 96.2 0.05 1.1E-06 55.8 11.4 123 184-317 562-687 (898)
328 PF03308 ArgK: ArgK protein; 96.2 0.012 2.7E-07 51.4 6.2 63 192-258 14-76 (266)
329 cd03245 ABCC_bacteriocin_expor 96.2 0.069 1.5E-06 46.1 11.1 51 284-334 152-203 (220)
330 PF05659 RPW8: Arabidopsis bro 96.2 0.12 2.6E-06 41.5 11.4 84 2-85 3-86 (147)
331 PRK15056 manganese/iron transp 96.2 0.057 1.2E-06 48.4 10.8 24 211-234 33-56 (272)
332 TIGR03522 GldA_ABC_ATP gliding 96.2 0.066 1.4E-06 48.8 11.2 24 211-234 28-51 (301)
333 PRK13531 regulatory ATPase Rav 96.2 0.0066 1.4E-07 58.1 4.7 43 184-234 20-62 (498)
334 KOG0744 AAA+-type ATPase [Post 96.2 0.021 4.6E-07 51.2 7.4 79 211-299 177-259 (423)
335 PRK04040 adenylate kinase; Pro 96.1 0.005 1.1E-07 51.9 3.4 24 211-234 2-25 (188)
336 PF13481 AAA_25: AAA domain; P 96.1 0.041 8.8E-07 46.4 9.0 42 212-253 33-82 (193)
337 PRK06002 fliI flagellum-specif 96.1 0.034 7.3E-07 53.0 9.2 86 211-299 165-263 (450)
338 TIGR00150 HI0065_YjeE ATPase, 96.1 0.0076 1.6E-07 47.6 4.1 24 211-234 22-45 (133)
339 PRK13543 cytochrome c biogenes 96.1 0.07 1.5E-06 45.9 10.6 24 211-234 37-60 (214)
340 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.1 0.065 1.4E-06 46.9 10.5 52 283-334 150-202 (238)
341 COG3903 Predicted ATPase [Gene 96.1 0.0023 5E-08 59.1 1.3 130 210-349 13-143 (414)
342 PRK13647 cbiO cobalt transport 96.1 0.063 1.4E-06 48.2 10.5 55 281-335 147-203 (274)
343 cd03280 ABC_MutS2 MutS2 homolo 96.1 0.024 5.3E-07 48.3 7.5 21 212-232 29-49 (200)
344 cd02023 UMPK Uridine monophosp 96.1 0.004 8.6E-08 53.0 2.6 22 213-234 1-22 (198)
345 cd03236 ABC_RNaseL_inhibitor_d 96.1 0.068 1.5E-06 47.4 10.5 25 210-234 25-49 (255)
346 PRK07132 DNA polymerase III su 96.1 0.061 1.3E-06 48.7 10.3 120 211-351 18-153 (299)
347 TIGR03771 anch_rpt_ABC anchore 96.1 0.071 1.5E-06 46.2 10.5 53 282-334 123-177 (223)
348 TIGR00382 clpX endopeptidase C 96.1 0.054 1.2E-06 51.3 10.2 50 184-233 77-138 (413)
349 PRK11823 DNA repair protein Ra 96.1 0.058 1.2E-06 51.9 10.7 84 210-301 79-167 (446)
350 COG1419 FlhF Flagellar GTP-bin 96.1 0.056 1.2E-06 50.4 10.0 59 210-269 202-262 (407)
351 PF00006 ATP-synt_ab: ATP synt 96.1 0.025 5.3E-07 48.7 7.3 82 212-299 16-114 (215)
352 PRK09580 sufC cysteine desulfu 96.1 0.061 1.3E-06 47.4 10.1 24 211-234 27-50 (248)
353 COG1703 ArgK Putative periplas 96.0 0.01 2.2E-07 52.7 4.9 65 193-261 37-101 (323)
354 PF13479 AAA_24: AAA domain 96.0 0.025 5.4E-07 48.7 7.3 20 212-231 4-23 (213)
355 PF08433 KTI12: Chromatin asso 96.0 0.03 6.4E-07 50.0 7.9 23 212-234 2-24 (270)
356 PRK00625 shikimate kinase; Pro 96.0 0.0053 1.2E-07 51.0 2.9 22 213-234 2-23 (173)
357 PRK12597 F0F1 ATP synthase sub 96.0 0.039 8.5E-07 52.8 9.1 88 211-299 143-246 (461)
358 COG3267 ExeA Type II secretory 96.0 0.15 3.3E-06 44.4 11.7 103 209-315 49-156 (269)
359 PRK00131 aroK shikimate kinase 96.0 0.006 1.3E-07 50.4 3.2 24 211-234 4-27 (175)
360 PRK10820 DNA-binding transcrip 96.0 0.019 4E-07 56.5 7.0 152 184-349 204-379 (520)
361 cd03285 ABC_MSH2_euk MutS2 hom 96.0 0.015 3.4E-07 50.3 5.7 121 210-337 29-160 (222)
362 TIGR02322 phosphon_PhnN phosph 95.9 0.0063 1.4E-07 50.8 3.1 23 212-234 2-24 (179)
363 cd03250 ABCC_MRP_domain1 Domai 95.9 0.12 2.7E-06 44.0 11.2 63 280-344 135-200 (204)
364 PRK10875 recD exonuclease V su 95.9 0.032 6.9E-07 55.7 8.4 53 212-264 168-221 (615)
365 PRK10751 molybdopterin-guanine 95.9 0.0081 1.7E-07 49.7 3.6 25 210-234 5-29 (173)
366 TIGR01359 UMP_CMP_kin_fam UMP- 95.9 0.0053 1.1E-07 51.4 2.6 22 213-234 1-22 (183)
367 COG1066 Sms Predicted ATP-depe 95.9 0.031 6.7E-07 51.9 7.6 82 211-301 93-179 (456)
368 TIGR03574 selen_PSTK L-seryl-t 95.9 0.052 1.1E-06 47.9 9.0 21 214-234 2-22 (249)
369 PHA02774 E1; Provisional 95.9 0.041 9E-07 53.7 8.8 40 209-252 432-471 (613)
370 cd03287 ABC_MSH3_euk MutS3 hom 95.9 0.024 5.2E-07 49.1 6.6 118 211-336 31-160 (222)
371 PRK09280 F0F1 ATP synthase sub 95.9 0.063 1.4E-06 51.4 9.9 88 211-299 144-247 (463)
372 TIGR03263 guanyl_kin guanylate 95.9 0.0065 1.4E-07 50.7 3.0 23 212-234 2-24 (180)
373 PF01583 APS_kinase: Adenylyls 95.9 0.017 3.8E-07 46.8 5.2 36 211-248 2-37 (156)
374 COG0488 Uup ATPase components 95.9 0.032 6.9E-07 54.6 8.0 132 211-345 348-510 (530)
375 COG1222 RPT1 ATP-dependent 26S 95.9 0.039 8.5E-07 50.3 7.9 97 184-301 151-255 (406)
376 PRK13537 nodulation ABC transp 95.9 0.09 1.9E-06 48.0 10.6 24 211-234 33-56 (306)
377 PRK07594 type III secretion sy 95.9 0.05 1.1E-06 51.7 9.0 85 211-299 155-254 (433)
378 PF06745 KaiC: KaiC; InterPro 95.8 0.014 3E-07 50.7 5.0 87 209-299 17-124 (226)
379 COG1120 FepC ABC-type cobalami 95.8 0.12 2.7E-06 45.5 10.8 24 210-233 27-50 (258)
380 PF02463 SMC_N: RecF/RecN/SMC 95.8 0.045 9.8E-07 47.3 8.2 47 290-336 158-205 (220)
381 cd01135 V_A-ATPase_B V/A-type 95.8 0.082 1.8E-06 47.0 9.7 88 212-299 70-175 (276)
382 cd02024 NRK1 Nicotinamide ribo 95.8 0.0062 1.4E-07 51.2 2.6 22 213-234 1-22 (187)
383 COG0467 RAD55 RecA-superfamily 95.8 0.014 3.1E-07 51.9 5.0 87 209-300 21-134 (260)
384 PTZ00185 ATPase alpha subunit; 95.8 0.081 1.8E-06 51.0 10.1 90 211-300 189-299 (574)
385 PRK15064 ABC transporter ATP-b 95.8 0.15 3.3E-06 50.3 12.7 52 282-335 165-217 (530)
386 PRK05922 type III secretion sy 95.8 0.069 1.5E-06 50.7 9.6 85 211-299 157-256 (434)
387 PRK05986 cob(I)alamin adenolsy 95.8 0.089 1.9E-06 44.2 9.2 118 211-330 22-158 (191)
388 cd01129 PulE-GspE PulE/GspE Th 95.8 0.047 1E-06 48.7 8.2 108 211-333 80-187 (264)
389 cd03227 ABC_Class2 ABC-type Cl 95.8 0.087 1.9E-06 43.2 9.2 54 290-345 99-154 (162)
390 PRK10416 signal recognition pa 95.8 0.081 1.8E-06 48.5 9.8 25 210-234 113-137 (318)
391 PRK14738 gmk guanylate kinase; 95.8 0.0093 2E-07 51.1 3.5 26 209-234 11-36 (206)
392 TIGR00390 hslU ATP-dependent p 95.8 0.028 6.1E-07 52.9 6.8 51 184-234 12-70 (441)
393 cd02021 GntK Gluconate kinase 95.8 0.007 1.5E-07 48.9 2.6 22 213-234 1-22 (150)
394 PRK08972 fliI flagellum-specif 95.8 0.057 1.2E-06 51.3 8.9 85 211-299 162-261 (444)
395 PF07726 AAA_3: ATPase family 95.8 0.0054 1.2E-07 47.7 1.8 27 214-242 2-28 (131)
396 TIGR02314 ABC_MetN D-methionin 95.8 0.071 1.5E-06 49.4 9.5 55 282-336 150-207 (343)
397 PF08477 Miro: Miro-like prote 95.7 0.0089 1.9E-07 46.0 3.0 22 214-235 2-23 (119)
398 COG1126 GlnQ ABC-type polar am 95.7 0.13 2.8E-06 43.8 10.0 122 211-335 28-201 (240)
399 PRK03846 adenylylsulfate kinas 95.7 0.01 2.2E-07 50.5 3.7 26 209-234 22-47 (198)
400 cd04159 Arl10_like Arl10-like 95.7 0.042 9.2E-07 44.0 7.2 21 214-234 2-22 (159)
401 cd02020 CMPK Cytidine monophos 95.7 0.0073 1.6E-07 48.4 2.6 22 213-234 1-22 (147)
402 PRK13545 tagH teichoic acids e 95.7 0.15 3.3E-06 49.7 11.8 24 211-234 50-73 (549)
403 PRK08149 ATP synthase SpaL; Va 95.7 0.067 1.5E-06 50.8 9.3 85 211-299 151-250 (428)
404 PRK12678 transcription termina 95.7 0.049 1.1E-06 53.1 8.3 96 195-299 405-512 (672)
405 PRK00300 gmk guanylate kinase; 95.7 0.0089 1.9E-07 51.1 3.2 24 211-234 5-28 (205)
406 cd00227 CPT Chloramphenicol (C 95.7 0.0086 1.9E-07 49.8 3.0 23 212-234 3-25 (175)
407 TIGR03498 FliI_clade3 flagella 95.7 0.054 1.2E-06 51.4 8.6 86 211-299 140-239 (418)
408 PRK00279 adk adenylate kinase; 95.7 0.026 5.7E-07 48.6 6.1 22 213-234 2-23 (215)
409 cd03289 ABCC_CFTR2 The CFTR su 95.7 0.14 2.9E-06 46.0 10.8 24 211-234 30-53 (275)
410 PRK06217 hypothetical protein; 95.7 0.0084 1.8E-07 50.3 2.9 35 213-248 3-39 (183)
411 TIGR03880 KaiC_arch_3 KaiC dom 95.7 0.092 2E-06 45.5 9.5 42 209-252 14-55 (224)
412 TIGR01447 recD exodeoxyribonuc 95.7 0.042 9E-07 54.6 8.0 22 212-233 161-182 (586)
413 PRK13949 shikimate kinase; Pro 95.7 0.0091 2E-07 49.4 2.9 22 213-234 3-24 (169)
414 smart00487 DEXDc DEAD-like hel 95.6 0.05 1.1E-06 45.3 7.5 22 212-233 25-47 (201)
415 PF06309 Torsin: Torsin; Inte 95.6 0.025 5.5E-07 43.9 5.1 47 185-234 26-76 (127)
416 TIGR03575 selen_PSTK_euk L-ser 95.6 0.11 2.4E-06 47.8 10.1 37 214-251 2-38 (340)
417 PRK11388 DNA-binding transcrip 95.6 0.041 8.9E-07 55.7 8.0 131 184-329 325-466 (638)
418 CHL00195 ycf46 Ycf46; Provisio 95.6 0.04 8.8E-07 53.4 7.6 25 210-234 258-282 (489)
419 cd00544 CobU Adenosylcobinamid 95.6 0.057 1.2E-06 44.6 7.5 79 214-299 2-82 (169)
420 cd01132 F1_ATPase_alpha F1 ATP 95.6 0.059 1.3E-06 47.9 8.0 83 211-299 69-170 (274)
421 cd01136 ATPase_flagellum-secre 95.6 0.09 1.9E-06 48.2 9.4 85 211-299 69-168 (326)
422 COG1936 Predicted nucleotide k 95.6 0.0088 1.9E-07 48.8 2.5 20 213-232 2-21 (180)
423 TIGR02655 circ_KaiC circadian 95.6 0.14 3E-06 49.9 11.3 87 209-300 261-363 (484)
424 PRK10463 hydrogenase nickel in 95.6 0.062 1.4E-06 48.2 8.1 87 209-301 102-195 (290)
425 PRK08927 fliI flagellum-specif 95.6 0.067 1.5E-06 50.9 8.7 85 211-299 158-257 (442)
426 PRK15115 response regulator Gl 95.6 0.053 1.1E-06 52.2 8.4 133 185-330 135-279 (444)
427 COG0194 Gmk Guanylate kinase [ 95.6 0.016 3.6E-07 47.9 4.0 24 211-234 4-27 (191)
428 PRK13947 shikimate kinase; Pro 95.6 0.01 2.2E-07 49.1 2.9 22 213-234 3-24 (171)
429 COG0541 Ffh Signal recognition 95.6 0.19 4.1E-06 47.2 11.3 73 193-268 79-156 (451)
430 COG2401 ABC-type ATPase fused 95.5 0.022 4.8E-07 52.9 5.2 158 184-341 371-579 (593)
431 PRK14530 adenylate kinase; Pro 95.5 0.01 2.2E-07 51.2 3.0 22 213-234 5-26 (215)
432 PRK14264 phosphate ABC transpo 95.5 0.13 2.9E-06 46.8 10.4 24 211-234 71-94 (305)
433 TIGR00041 DTMP_kinase thymidyl 95.5 0.11 2.3E-06 43.9 9.2 24 212-235 4-27 (195)
434 PRK15453 phosphoribulokinase; 95.5 0.09 2E-06 46.9 8.8 78 209-289 3-89 (290)
435 cd00046 DEXDc DEAD-like helica 95.5 0.076 1.6E-06 41.3 7.8 37 213-249 2-38 (144)
436 COG1428 Deoxynucleoside kinase 95.5 0.011 2.3E-07 50.0 2.8 24 211-234 4-27 (216)
437 PRK13657 cyclic beta-1,2-gluca 95.5 0.16 3.5E-06 50.9 11.8 24 211-234 361-384 (588)
438 PRK10078 ribose 1,5-bisphospho 95.5 0.011 2.5E-07 49.7 3.0 23 212-234 3-25 (186)
439 COG2274 SunT ABC-type bacterio 95.5 0.26 5.6E-06 50.2 13.1 23 211-233 499-521 (709)
440 PRK05201 hslU ATP-dependent pr 95.5 0.037 8.1E-07 52.1 6.6 51 184-234 15-73 (443)
441 COG1131 CcmA ABC-type multidru 95.5 0.25 5.5E-06 44.8 11.9 24 211-234 31-54 (293)
442 PF00625 Guanylate_kin: Guanyl 95.5 0.016 3.5E-07 48.6 3.9 37 211-249 2-38 (183)
443 cd00071 GMPK Guanosine monopho 95.5 0.01 2.3E-07 47.2 2.6 21 214-234 2-22 (137)
444 cd00464 SK Shikimate kinase (S 95.5 0.011 2.5E-07 47.7 2.9 21 214-234 2-22 (154)
445 PRK13409 putative ATPase RIL; 95.5 0.16 3.5E-06 50.7 11.5 125 211-337 365-521 (590)
446 PRK14527 adenylate kinase; Pro 95.5 0.013 2.8E-07 49.6 3.3 25 210-234 5-29 (191)
447 PF06414 Zeta_toxin: Zeta toxi 95.5 0.034 7.3E-07 47.3 5.9 120 209-333 13-134 (199)
448 TIGR02524 dot_icm_DotB Dot/Icm 95.5 0.049 1.1E-06 50.8 7.3 109 211-332 134-249 (358)
449 TIGR00416 sms DNA repair prote 95.5 0.1 2.2E-06 50.3 9.7 85 209-301 92-181 (454)
450 PRK15439 autoinducer 2 ABC tra 95.5 0.2 4.3E-06 49.3 11.9 24 211-234 37-60 (510)
451 TIGR02857 CydD thiol reductant 95.5 0.23 5.1E-06 49.0 12.5 25 210-234 347-371 (529)
452 TIGR03375 type_I_sec_LssB type 95.4 0.16 3.5E-06 51.9 11.8 24 211-234 491-514 (694)
453 TIGR00176 mobB molybdopterin-g 95.4 0.021 4.5E-07 46.6 4.2 36 213-249 1-36 (155)
454 TIGR01069 mutS2 MutS2 family p 95.4 0.027 5.8E-07 57.8 5.9 120 211-336 322-451 (771)
455 PF03193 DUF258: Protein of un 95.4 0.024 5.2E-07 46.2 4.5 36 190-234 23-58 (161)
456 PLN02348 phosphoribulokinase 95.4 0.2 4.4E-06 46.8 11.1 26 209-234 47-72 (395)
457 TIGR02868 CydC thiol reductant 95.4 0.14 3E-06 50.6 10.8 25 210-234 360-384 (529)
458 PRK05800 cobU adenosylcobinami 95.4 0.075 1.6E-06 44.0 7.5 80 213-299 3-85 (170)
459 PF03266 NTPase_1: NTPase; In 95.4 0.013 2.8E-07 48.4 2.9 22 214-235 2-23 (168)
460 TIGR03305 alt_F1F0_F1_bet alte 95.4 0.088 1.9E-06 50.2 8.7 88 211-299 138-241 (449)
461 TIGR00073 hypB hydrogenase acc 95.4 0.016 3.4E-07 49.7 3.5 26 209-234 20-45 (207)
462 cd01672 TMPK Thymidine monopho 95.4 0.051 1.1E-06 45.8 6.7 23 213-235 2-24 (200)
463 TIGR01313 therm_gnt_kin carboh 95.4 0.011 2.3E-07 48.6 2.4 21 214-234 1-21 (163)
464 PRK11650 ugpC glycerol-3-phosp 95.4 0.13 2.8E-06 48.0 9.8 24 211-234 30-53 (356)
465 PRK11160 cysteine/glutathione 95.4 0.18 4E-06 50.3 11.5 25 210-234 365-389 (574)
466 PRK13975 thymidylate kinase; P 95.4 0.015 3.2E-07 49.3 3.3 23 212-234 3-25 (196)
467 cd02029 PRK_like Phosphoribulo 95.4 0.058 1.3E-06 47.7 7.0 77 213-291 1-85 (277)
468 COG2019 AdkA Archaeal adenylat 95.3 0.016 3.5E-07 46.9 3.2 24 211-234 4-27 (189)
469 PRK12339 2-phosphoglycerate ki 95.3 0.017 3.6E-07 49.1 3.5 24 211-234 3-26 (197)
470 PRK14737 gmk guanylate kinase; 95.3 0.016 3.5E-07 48.7 3.4 25 210-234 3-27 (186)
471 CHL00081 chlI Mg-protoporyphyr 95.3 0.017 3.7E-07 53.4 3.7 45 184-234 17-61 (350)
472 PLN02796 D-glycerate 3-kinase 95.3 0.13 2.7E-06 47.4 9.2 26 209-234 98-123 (347)
473 TIGR02329 propionate_PrpR prop 95.3 0.053 1.1E-06 53.2 7.2 133 184-330 212-358 (526)
474 PRK05057 aroK shikimate kinase 95.3 0.015 3.3E-07 48.3 3.0 23 212-234 5-27 (172)
475 PRK09099 type III secretion sy 95.3 0.072 1.6E-06 50.8 7.9 86 211-299 163-262 (441)
476 PRK15424 propionate catabolism 95.3 0.049 1.1E-06 53.4 6.9 47 184-234 219-265 (538)
477 COG1223 Predicted ATPase (AAA+ 95.3 0.017 3.8E-07 50.2 3.4 52 184-235 121-175 (368)
478 PRK11147 ABC transporter ATPas 95.3 0.26 5.7E-06 49.8 12.4 54 281-336 165-219 (635)
479 PRK11176 lipid transporter ATP 95.3 0.21 4.5E-06 50.0 11.6 24 211-234 369-392 (582)
480 PF00005 ABC_tran: ABC transpo 95.3 0.017 3.6E-07 45.7 3.1 23 212-234 12-34 (137)
481 cd00820 PEPCK_HprK Phosphoenol 95.3 0.018 3.9E-07 43.5 3.0 22 211-232 15-36 (107)
482 PF13245 AAA_19: Part of AAA d 95.2 0.047 1E-06 38.5 5.0 22 212-233 11-33 (76)
483 PRK05973 replicative DNA helic 95.2 0.15 3.3E-06 44.5 9.2 114 210-330 63-193 (237)
484 PRK11174 cysteine/glutathione 95.2 0.23 5.1E-06 49.7 11.9 25 210-234 375-399 (588)
485 TIGR01192 chvA glucan exporter 95.2 0.25 5.4E-06 49.5 12.0 25 210-234 360-384 (585)
486 TIGR02768 TraA_Ti Ti-type conj 95.2 0.13 2.9E-06 52.7 10.2 104 212-327 369-474 (744)
487 PRK10923 glnG nitrogen regulat 95.2 0.06 1.3E-06 52.2 7.4 46 185-234 139-184 (469)
488 TIGR02030 BchI-ChlI magnesium 95.2 0.025 5.5E-07 52.1 4.5 44 184-233 4-47 (337)
489 PRK05688 fliI flagellum-specif 95.2 0.099 2.2E-06 49.9 8.5 85 211-299 168-267 (451)
490 PLN02200 adenylate kinase fami 95.2 0.019 4.1E-07 50.2 3.5 25 210-234 42-66 (234)
491 TIGR03258 PhnT 2-aminoethylpho 95.2 0.16 3.5E-06 47.4 9.9 56 281-336 146-205 (362)
492 PRK13765 ATP-dependent proteas 95.2 0.033 7.3E-07 55.6 5.5 74 184-267 31-104 (637)
493 PRK06793 fliI flagellum-specif 95.2 0.13 2.9E-06 48.8 9.3 123 211-337 156-293 (432)
494 TIGR02788 VirB11 P-type DNA tr 95.2 0.045 9.8E-07 50.0 6.0 114 211-334 144-257 (308)
495 PF13521 AAA_28: AAA domain; P 95.2 0.016 3.4E-07 47.6 2.7 21 214-234 2-22 (163)
496 PRK14257 phosphate ABC transpo 95.1 0.2 4.4E-06 46.2 10.3 24 211-234 108-131 (329)
497 PF13086 AAA_11: AAA domain; P 95.1 0.035 7.5E-07 48.0 5.1 52 213-264 19-75 (236)
498 PRK11432 fbpC ferric transport 95.1 0.17 3.6E-06 47.2 9.8 24 211-234 32-55 (351)
499 cd03284 ABC_MutS1 MutS1 homolo 95.1 0.053 1.1E-06 46.8 6.0 22 212-233 31-52 (216)
500 PF00025 Arf: ADP-ribosylation 95.1 0.098 2.1E-06 43.5 7.5 104 210-314 13-140 (175)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-39 Score=321.58 Aligned_cols=314 Identities=25% Similarity=0.406 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhchhcCChHHHHHHHHHHHhhhcchHHHH
Q 036619 3 HAIVSSLLDQLNSIAQDQVKGKWRLVTGVEQEVGKLTTNLQAIQAVLEDAEQRQMKQDKAVTFWLDQLIDASYDMEDVLE 82 (352)
Q Consensus 3 ~~~vs~~~~kl~~~l~~~~~~e~~~~~~v~~~~~~L~~~L~~i~~~l~~ae~~~~~~~~~~~~Wl~~lr~~ayd~eD~lD 82 (352)
++.++..++++... +.++...+.+.++.+..|+.+|..+++++++++.++.. ...+..|...+++++|++||.++
T Consensus 2 ~~~~s~~~~~~~~~----l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 2 GACVSFGVEKLDQL----LNRESECLDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred CeEEEEehhhHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777776 67788889999999999999999999999999999887 88999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCcccccccccceecccCCCccccCCCCcccchHhHHHHHHHHHHHHHHHHhhhhccCcc
Q 036619 83 EWITETRKLQLDEGGDDDDDDNVGAFVTFLTKVCFFFPAASNCFGGFKQLSLRHDIAVKIREISEKLDDIARQKDSFKLV 162 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~i~~i~~~l~~i~~~~~~~~~~ 162 (352)
.|.......+..+.-.. .....++.|. ...+++.+..+..+..++..+....+.++..
T Consensus 77 ~~~v~~~~~~~~~~l~~--------~~~~~~~~c~--------------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~ 134 (889)
T KOG4658|consen 77 LFLVEEIERKANDLLST--------RSVERQRLCL--------------CGFCSKNVSDSYKYGKRVSKVLREVESLGSK 134 (889)
T ss_pred HHHHHHHHHHHhHHhhh--------hHHHHHHHhh--------------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccc
Confidence 99876654433211000 0000111111 0234555556666666666655555555443
Q ss_pred ccccCCc---CCCCcccccccccCCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhh-hh
Q 036619 163 ENVSNNV---KKPERVRTTSLIDEGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDE-VK 238 (352)
Q Consensus 163 ~~~~~~~---~~~~~~~~~~~~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~ 238 (352)
....... .+.......+...... ||.+..++++.+.|..++ ..+++|+||||+||||||+.++|+.. +.
T Consensus 135 ~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~ 207 (889)
T KOG4658|consen 135 GVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVG 207 (889)
T ss_pred cceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhc
Confidence 3211111 1111222333333344 999999999999999865 38999999999999999999999987 99
Q ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhcc
Q 036619 239 RNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNE--FQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN 316 (352)
Q Consensus 239 ~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~ 316 (352)
.+|+.++||+||+.|+...++.+|++.++.......+ .++++..|.+.|+.|||||||||||+. .+|+.+..++|.
T Consensus 208 ~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~ 285 (889)
T KOG4658|consen 208 NHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPS 285 (889)
T ss_pred ccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCC
Confidence 9999999999999999999999999999885543333 478899999999999999999999998 679999999999
Q ss_pred CCCCcEEEEecCChHHHHH-hCCCCeeeCCCCCCCcC
Q 036619 317 GLHGSKILVTTRNESVARM-MGSTDIISIEQLAEEEC 352 (352)
Q Consensus 317 ~~~gs~IivTTR~~~va~~-~~~~~~~~l~~L~~~es 352 (352)
..+||+|++|||++.||.. +++...+++.+|+++||
T Consensus 286 ~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~ea 322 (889)
T KOG4658|consen 286 RENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEA 322 (889)
T ss_pred ccCCeEEEEEeccHhhhhccccCCccccccccCcccc
Confidence 9899999999999999998 88889999999999987
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.95 E-value=4.4e-28 Score=219.55 Aligned_cols=158 Identities=39% Similarity=0.594 Sum_probs=129.1
Q ss_pred ccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 036619 189 RVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGK 268 (352)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 268 (352)
|+.++++|.+.|.... .+.++|+|+||||+||||||..+|++..++.+|+.++|++++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 6889999999998855 568999999999999999999999987889999999999999999999999999999988
Q ss_pred CCC---CcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHHHHhCC-CCeeeC
Q 036619 269 SAS---GLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVARMMGS-TDIISI 344 (352)
Q Consensus 269 ~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~-~~~~~l 344 (352)
... ...+.+.+...+.+.|.+++|||||||||+. ..|+.+...++....||+||||||+..++..++. ...|+|
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4566778999999999999999999999987 5788888888877789999999999999887655 778999
Q ss_pred CCCCCCcC
Q 036619 345 EQLAEEEC 352 (352)
Q Consensus 345 ~~L~~~es 352 (352)
++|+++||
T Consensus 155 ~~L~~~ea 162 (287)
T PF00931_consen 155 EPLSEEEA 162 (287)
T ss_dssp SS--HHHH
T ss_pred cccccccc
Confidence 99998764
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=2.3e-20 Score=197.17 Aligned_cols=159 Identities=21% Similarity=0.356 Sum_probs=120.9
Q ss_pred cCCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEe---CCC------
Q 036619 182 DEGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV---SDT------ 252 (352)
Q Consensus 182 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~------ 252 (352)
+...++|++..++++..+|.... ..+++++||||||+||||||+.+|+ ++..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 44679999999999998885433 5689999999999999999999998 57788998888742 111
Q ss_pred -----CC-HHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEE
Q 036619 253 -----FD-QIRIAKAIIEGLGKSAS-GLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILV 325 (352)
Q Consensus 253 -----~~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv 325 (352)
++ ...+..+++..+..... .... ...+++.|.++|+||||||||+. ..|+.+.......++||+|||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEE
Confidence 11 12344455554433211 1111 24577889999999999999886 578888776666678999999
Q ss_pred ecCChHHHHHhCCCCeeeCCCCCCCcC
Q 036619 326 TTRNESVARMMGSTDIISIEQLAEEEC 352 (352)
Q Consensus 326 TTR~~~va~~~~~~~~~~l~~L~~~es 352 (352)
|||+..++..++..++|++..|+++||
T Consensus 330 TTrd~~vl~~~~~~~~~~v~~l~~~ea 356 (1153)
T PLN03210 330 ITKDKHFLRAHGIDHIYEVCLPSNELA 356 (1153)
T ss_pred EeCcHHHHHhcCCCeEEEecCCCHHHH
Confidence 999999998888888999999998765
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.23 E-value=1.7e-10 Score=109.29 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=106.9
Q ss_pred cCCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHH
Q 036619 182 DEGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKA 261 (352)
Q Consensus 182 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 261 (352)
.+..++||++++++|...|...-.+ .....+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~--~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG--SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 3467999999999999988543211 23455779999999999999999986433332345677777777788899999
Q ss_pred HHHHhCCCC--CCcccHHHHHHHHHHhcC--CceEEEEecCCCCCC-ccChhHHHHhhc--cCCCCcE--EEEecCChHH
Q 036619 262 IIEGLGKSA--SGLNEFQSLMSRIQSSIK--GKKNFLVLDDVWDGD-YNKWQPFFRCLK--NGLHGSK--ILVTTRNESV 332 (352)
Q Consensus 262 i~~~l~~~~--~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~-~~~~~~l~~~l~--~~~~gs~--IivTTR~~~v 332 (352)
|+.++.... ....+.+++...+.+.+. ++..+||||+++.-. ....+.+...+. ....+++ ||.++....+
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 999987632 223345667777777764 456899999997642 112223333222 1122333 5666555443
Q ss_pred HHHhC-------CCCeeeCCCCCCCc
Q 036619 333 ARMMG-------STDIISIEQLAEEE 351 (352)
Q Consensus 333 a~~~~-------~~~~~~l~~L~~~e 351 (352)
...+. ....+.+.+++.++
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e 211 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADE 211 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHH
Confidence 33221 12456788877653
No 5
>PF05729 NACHT: NACHT domain
Probab=99.21 E-value=1e-10 Score=96.56 Aligned_cols=134 Identities=22% Similarity=0.313 Sum_probs=83.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhcc----CCeEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFDQI---RIAKAIIEGLGKSASGLNEFQSLMSRIQ 284 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 284 (352)
+++.|+|.+|+||||+++.++..-..... +...+|++........ .+...|..+....... ... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP---IEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh---hHH---HHH
Confidence 47889999999999999999886433332 4567777766544332 3333343333322111 111 222
Q ss_pred Hh-cCCceEEEEecCCCCCCcc-------ChhH-HHHhhcc-CCCCcEEEEecCChHH---HHHhCCCCeeeCCCCCCCc
Q 036619 285 SS-IKGKKNFLVLDDVWDGDYN-------KWQP-FFRCLKN-GLHGSKILVTTRNESV---ARMMGSTDIISIEQLAEEE 351 (352)
Q Consensus 285 ~~-l~~kr~LlVlDdvw~~~~~-------~~~~-l~~~l~~-~~~gs~IivTTR~~~v---a~~~~~~~~~~l~~L~~~e 351 (352)
.. ...++++||||++.+.... .+.. +...++. ..++++||||+|.... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 2678999999999764321 1222 3344443 3668999999998766 4444456689999999765
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.10 E-value=1.5e-09 Score=101.65 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=82.4
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhh-ccC---CeEEEEEeCCCCCHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK-RNF---EKVIWVCVSDTFDQIRIA 259 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~~~ 259 (352)
..++||++++++|...|...-.+ .....+.|+|++|+|||++++.++++-... ... -..+|+++....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~--~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG--SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 57999999999999998643211 334568899999999999999999853211 111 146778887777788899
Q ss_pred HHHHHHhC---CCCC-CcccHHHHHHHHHHhc--CCceEEEEecCCCCC
Q 036619 260 KAIIEGLG---KSAS-GLNEFQSLMSRIQSSI--KGKKNFLVLDDVWDG 302 (352)
Q Consensus 260 ~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~ 302 (352)
..|++++. ...+ ...+..++...+.+.+ .+++++||||+++.-
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 99999984 2211 2223445555566655 356889999999765
No 7
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.00 E-value=1.1e-09 Score=86.89 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=81.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhc---cCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKR---NFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSS 286 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 286 (352)
.-+++.|+|.+|+|||++++.+.++..... .-..++|+++....+...+...|+..++.......+...+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 357889999999999999999988532110 13456799998888999999999999998766655667777888887
Q ss_pred cCCc-eEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCC
Q 036619 287 IKGK-KNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRN 329 (352)
Q Consensus 287 l~~k-r~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (352)
+... ..+||||++..- ..+.++.|..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7544 469999999665 4334444544333 556677776654
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.98 E-value=2e-08 Score=90.03 Aligned_cols=137 Identities=17% Similarity=0.185 Sum_probs=82.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCccc---HHHHHHHHHHh-
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNE---FQSLMSRIQSS- 286 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~- 286 (352)
...+.|+|++|+|||||++.+++.... ..+ ..+|+ +....+..+++..|+..++........ ...+...+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 457889999999999999999985321 111 22333 333457778899999888765432211 12233333332
Q ss_pred cCCceEEEEecCCCCCCccChhHHHHhhcc---CCCCcEEEEecCChHHHHHhC----------CCCeeeCCCCCCCc
Q 036619 287 IKGKKNFLVLDDVWDGDYNKWQPFFRCLKN---GLHGSKILVTTRNESVARMMG----------STDIISIEQLAEEE 351 (352)
Q Consensus 287 l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~---~~~gs~IivTTR~~~va~~~~----------~~~~~~l~~L~~~e 351 (352)
..+++++||+||+|......++.+...... +.....|++|.... ....+. ....+++.+|+.+|
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 267889999999998765566666543321 12223455655433 222221 13467899998765
No 9
>PF13173 AAA_14: AAA domain
Probab=98.96 E-value=3.5e-09 Score=83.78 Aligned_cols=118 Identities=23% Similarity=0.294 Sum_probs=79.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCce
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKK 291 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (352)
+++.|.|+.|+|||||+++++.+.. ....+++++..+........ .+ +...+.+...+++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccCC
Confidence 6889999999999999999987532 33557777766543311100 00 2233333344578
Q ss_pred EEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHHHHh------CCCCeeeCCCCCCCc
Q 036619 292 NFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVARMM------GSTDIISIEQLAEEE 351 (352)
Q Consensus 292 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~------~~~~~~~l~~L~~~e 351 (352)
.+|+||++... ..|......+-+..+..+|++|+.+......- |-...++|.||+..|
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 88999999776 57888777776655667899999987665321 224568999998665
No 10
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.94 E-value=2e-09 Score=97.55 Aligned_cols=132 Identities=20% Similarity=0.373 Sum_probs=83.2
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|....+.++++ . ..+..+.+||++|+||||||+.+... ...+| ..+|...+-.+
T Consensus 30 ~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvk------ 87 (436)
T COG2256 30 EHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVK------ 87 (436)
T ss_pred HhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHH------
Confidence 455565555555443 2 45777789999999999999999973 33333 33333332222
Q ss_pred HHhCCCCCCcccHHHHHHHHHH-hcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEE--ecCChHH---HHHhC
Q 036619 264 EGLGKSASGLNEFQSLMSRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILV--TTRNESV---ARMMG 337 (352)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v---a~~~~ 337 (352)
++..+.+.-++ ...+++.+|++|.|+.-+...-+.|++.+ .+|.-|+| ||.|+.- ....+
T Consensus 88 -----------dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 88 -----------DLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred -----------HHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhh
Confidence 22233333322 33589999999999876655555555444 45776666 7777742 22334
Q ss_pred CCCeeeCCCCCCCc
Q 036619 338 STDIISIEQLAEEE 351 (352)
Q Consensus 338 ~~~~~~l~~L~~~e 351 (352)
-..++.|++|+.+|
T Consensus 154 R~~vf~lk~L~~~d 167 (436)
T COG2256 154 RARVFELKPLSSED 167 (436)
T ss_pred hhheeeeecCCHHH
Confidence 47899999999875
No 11
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.92 E-value=6.6e-10 Score=97.02 Aligned_cols=156 Identities=22% Similarity=0.260 Sum_probs=76.5
Q ss_pred cccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHH---
Q 036619 186 VCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAI--- 262 (352)
Q Consensus 186 ~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i--- 262 (352)
|+||+.++++|.+++... ....+.|+|+.|+|||+|++.+.+... ...+ ..+|+.......... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~-~~~~-~~~y~~~~~~~~~~~-~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELK-EKGY-KVVYIDFLEESNESS-LRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhh-hcCC-cEEEEecccchhhhH-HHHHHHH
Confidence 689999999999988643 246788999999999999999998431 1122 344444444332221 1121
Q ss_pred -----------HHHhCCCC------CCcccHHHHHHHHHHhc--CCceEEEEecCCCCCC------ccChhHHHHhhcc-
Q 036619 263 -----------IEGLGKSA------SGLNEFQSLMSRIQSSI--KGKKNFLVLDDVWDGD------YNKWQPFFRCLKN- 316 (352)
Q Consensus 263 -----------~~~l~~~~------~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~------~~~~~~l~~~l~~- 316 (352)
...+.... ............+.+.+ .+++.+|||||+.... ......+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 11111111 01112222223333333 2445999999996543 1112234444443
Q ss_pred --CCCCcEEEEecCChHHHHH--------hCCCCeeeCCCCCCCc
Q 036619 317 --GLHGSKILVTTRNESVARM--------MGSTDIISIEQLAEEE 351 (352)
Q Consensus 317 --~~~gs~IivTTR~~~va~~--------~~~~~~~~l~~L~~~e 351 (352)
..+.+ +|++.....+... .+....+.|++|+.++
T Consensus 152 ~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e 195 (234)
T PF01637_consen 152 LSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEE 195 (234)
T ss_dssp ---TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHH
T ss_pred cccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHH
Confidence 33334 5555555544433 2224458999998765
No 12
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.88 E-value=5.1e-09 Score=88.18 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=33.8
Q ss_pred ccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhh
Q 036619 185 EVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK 238 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 238 (352)
.|+||+++.+++...|. .. .....+.+.|+|.+|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA--QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT--SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH--HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999995 22 22457999999999999999999998864433
No 13
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.85 E-value=3.5e-08 Score=79.26 Aligned_cols=125 Identities=19% Similarity=0.165 Sum_probs=73.7
Q ss_pred ccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 036619 187 CGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGL 266 (352)
Q Consensus 187 ~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 266 (352)
.|++..+..+...+... ....+.|+|++|+|||+|++.+++... ..-..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 36777788888877543 245788999999999999999998532 222346666655543322211111100
Q ss_pred CCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccC------CCCcEEEEecCChH
Q 036619 267 GKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG------LHGSKILVTTRNES 331 (352)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~~gs~IivTTR~~~ 331 (352)
............+..+||+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999864222334444444432 35778888888654
No 14
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.75 E-value=2e-08 Score=88.21 Aligned_cols=89 Identities=19% Similarity=0.108 Sum_probs=62.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCccc------HHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT--FDQIRIAKAIIEGLGKSASGLNE------FQSLMSR 282 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~------~~~~~~~ 282 (352)
-..+.|+|++|+|||||++.+|++.... +|+.++|++++.+ +++.++++.+...+-....+... .......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999975444 8999999998777 78999999984333221111111 1122333
Q ss_pred HHHh-cCCceEEEEecCCC
Q 036619 283 IQSS-IKGKKNFLVLDDVW 300 (352)
Q Consensus 283 l~~~-l~~kr~LlVlDdvw 300 (352)
...+ -++++.+|++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 3332 25899999999994
No 15
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.1e-07 Score=86.43 Aligned_cols=139 Identities=19% Similarity=0.203 Sum_probs=97.1
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..+.+|+++++++...|...-.+ ..+.-+.|+|.+|+|||+.++.+...-+....=...++|++-...+..+++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 34999999999999888654332 2233488999999999999999998532221111279999999999999999999
Q ss_pred HHhCCCCCCcccHHHHHHHHHHhc--CCceEEEEecCCCCCCccChhHHHHhhccCCC-CcEEE
Q 036619 264 EGLGKSASGLNEFQSLMSRIQSSI--KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLH-GSKIL 324 (352)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~Ii 324 (352)
++++..+.......+....+.+.+ .++.++||||++.......-+.+...+..... .++|+
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~ 158 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVS 158 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEE
Confidence 999865554455566667777766 46899999999976422222445455543322 45443
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=1.2e-07 Score=99.22 Aligned_cols=131 Identities=21% Similarity=0.276 Sum_probs=84.4
Q ss_pred ccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC-CCCHHHHHHHHH
Q 036619 185 EVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFDQIRIAKAII 263 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~ 263 (352)
.++-|. +|.+.|... ...+++.|.|++|.|||||+...... ++.++|+++.. +.+...++..++
T Consensus 15 ~~~~R~----rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 15 NTVVRE----RLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred ccCcch----HHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHH
Confidence 445554 455555322 34688999999999999999988752 33699999964 456677777777
Q ss_pred HHhCCCCCC-------------cccHHHHHHHHHHhc-C-CceEEEEecCCCCCCccChh-HHHHhhccCCCCcEEEEec
Q 036619 264 EGLGKSASG-------------LNEFQSLMSRIQSSI-K-GKKNFLVLDDVWDGDYNKWQ-PFFRCLKNGLHGSKILVTT 327 (352)
Q Consensus 264 ~~l~~~~~~-------------~~~~~~~~~~l~~~l-~-~kr~LlVlDdvw~~~~~~~~-~l~~~l~~~~~gs~IivTT 327 (352)
..+...... ..+...+...+...+ . +.+++|||||+..-+..... .+...++....+..+||||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 777422111 012233333333333 2 67899999999776544444 4444445555667888999
Q ss_pred CCh
Q 036619 328 RNE 330 (352)
Q Consensus 328 R~~ 330 (352)
|..
T Consensus 160 R~~ 162 (903)
T PRK04841 160 RNL 162 (903)
T ss_pred CCC
Confidence 984
No 17
>PRK06893 DNA replication initiation factor; Validated
Probab=98.68 E-value=6e-08 Score=84.67 Aligned_cols=114 Identities=17% Similarity=0.294 Sum_probs=69.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
.+.+.|+|++|+|||+|++.+++.. ........|+++.... ... ..+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~~---~~~---------------------~~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKSQ---YFS---------------------PAVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHhh---hhh---------------------HHHHhhcc-c
Confidence 3568899999999999999999853 2223345667654210 000 01111122 2
Q ss_pred eEEEEecCCCCCC-ccChh-HHHHhhccC-CCCcEEEE-ecCC---------hHHHHHhCCCCeeeCCCCCCCc
Q 036619 291 KNFLVLDDVWDGD-YNKWQ-PFFRCLKNG-LHGSKILV-TTRN---------ESVARMMGSTDIISIEQLAEEE 351 (352)
Q Consensus 291 r~LlVlDdvw~~~-~~~~~-~l~~~l~~~-~~gs~Iiv-TTR~---------~~va~~~~~~~~~~l~~L~~~e 351 (352)
.-+|||||+|... ...|. .+...+... ..|+.+|| |+.. ++++..++....++++++++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~ 165 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQ 165 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHH
Confidence 3489999998742 24566 344545432 23555654 4544 4677766777889999998764
No 18
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.65 E-value=7.8e-08 Score=88.41 Aligned_cols=100 Identities=17% Similarity=0.103 Sum_probs=65.4
Q ss_pred HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCCC
Q 036619 195 ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--DQIRIAKAIIEGLGKSASG 272 (352)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~ 272 (352)
++++.+..-. .-....|+|++|+|||||++.+|++.... ||+.++||.+++.. .+.++++.|.-.+-....+
T Consensus 158 rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 4555554322 23567799999999999999999975444 99999999999987 6777777775221111111
Q ss_pred cc-c-----HHHHHHHHHHh-cCCceEEEEecCCC
Q 036619 273 LN-E-----FQSLMSRIQSS-IKGKKNFLVLDDVW 300 (352)
Q Consensus 273 ~~-~-----~~~~~~~l~~~-l~~kr~LlVlDdvw 300 (352)
.. . ........+.+ ..+++.||++|++.
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 11 1 11222222222 26899999999994
No 19
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.64 E-value=9e-08 Score=91.03 Aligned_cols=135 Identities=21% Similarity=0.357 Sum_probs=77.8
Q ss_pred CccccccchHHH---HHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHH
Q 036619 184 GEVCGRVDEKSE---LFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAK 260 (352)
Q Consensus 184 ~~~~gr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 260 (352)
.+++|++..+.. |..++.. .....+.++|++|+||||||+.+++. .... |+.++.......-++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHH
Confidence 357787766544 6666533 23456778999999999999999874 2222 233322211111112
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEE--ecCChH--HH-H
Q 036619 261 AIIEGLGKSASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILV--TTRNES--VA-R 334 (352)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~--va-~ 334 (352)
.++ ...... ..+++.+|+||+++..+....+.|...+.. |+.+++ ||.+.. +- .
T Consensus 79 ~ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 222 222211 246788999999988765556666666653 454554 344432 21 1
Q ss_pred HhCCCCeeeCCCCCCCc
Q 036619 335 MMGSTDIISIEQLAEEE 351 (352)
Q Consensus 335 ~~~~~~~~~l~~L~~~e 351 (352)
..+-...+++.+|++++
T Consensus 139 L~SR~~~~~~~~ls~e~ 155 (413)
T PRK13342 139 LLSRAQVFELKPLSEED 155 (413)
T ss_pred HhccceeeEeCCCCHHH
Confidence 22234678899888764
No 20
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.63 E-value=1.5e-07 Score=84.37 Aligned_cols=120 Identities=25% Similarity=0.331 Sum_probs=79.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (352)
..+..+.+||++|+||||||+.+.+..+- + ...+|..|....-.+-++.|+++-.. ...+-
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~--~--SyrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKK--H--SYRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCC--C--ceEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 34677889999999999999999985332 2 26678777665544545555553221 12335
Q ss_pred CceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEE--ecCChHH---HHHhCCCCeeeCCCCCCC
Q 036619 289 GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILV--TTRNESV---ARMMGSTDIISIEQLAEE 350 (352)
Q Consensus 289 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v---a~~~~~~~~~~l~~L~~~ 350 (352)
.+|.+|++|.|+.-+...-+. +||.-.+|+-++| ||.++.. +..++-..++-|++|+.+
T Consensus 221 krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n 284 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVN 284 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHH
Confidence 788999999997655433333 4566666886666 7877742 334455678888888765
No 21
>PTZ00202 tuzin; Provisional
Probab=98.62 E-value=5.7e-07 Score=83.45 Aligned_cols=160 Identities=14% Similarity=0.190 Sum_probs=95.3
Q ss_pred ccccCCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHH
Q 036619 179 SLIDEGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRI 258 (352)
Q Consensus 179 ~~~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 258 (352)
.+.+.+.|+||+.+...|...|...+. ...+++.|.|++|+|||||++.+.... ++ ..++++.. +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l----~~-~qL~vNpr---g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKE----GM-PAVFVDVR---GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcC----Cc-eEEEECCC---CHHHH
Confidence 334557899999999999998865442 235699999999999999999998642 21 12223222 67999
Q ss_pred HHHHHHHhCCCCCCc-c-cHHHHHHHHHHhc-C-CceEEEEecCCCCCC--ccChhHHHHhhccCCCCcEEEEecCChHH
Q 036619 259 AKAIIEGLGKSASGL-N-EFQSLMSRIQSSI-K-GKKNFLVLDDVWDGD--YNKWQPFFRCLKNGLHGSKILVTTRNESV 332 (352)
Q Consensus 259 ~~~i~~~l~~~~~~~-~-~~~~~~~~l~~~l-~-~kr~LlVlDdvw~~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (352)
+..|+.+|+...... . -...+.+.|.+.- . +++.+||+-=- +.+ .-.+++. -.|.+...-|.|++---.+.+
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~-v~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEV-VALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHH-HHHHccchhheeeeeehHhhc
Confidence 999999999743222 1 1244444444432 3 67777777632 210 0122222 233444556777776655543
Q ss_pred HHHhCC---CCeeeCCCCCCCc
Q 036619 333 ARMMGS---TDIISIEQLAEEE 351 (352)
Q Consensus 333 a~~~~~---~~~~~l~~L~~~e 351 (352)
.-..-. -+.|.+.+++.++
T Consensus 404 t~~~~~lprldf~~vp~fsr~q 425 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQ 425 (550)
T ss_pred chhcccCccceeEecCCCCHHH
Confidence 322111 3345555555443
No 22
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=3.1e-07 Score=84.19 Aligned_cols=146 Identities=16% Similarity=0.249 Sum_probs=96.0
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhh----hhhccCCeEEEEEe-CCCCCHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNND----EVKRNFEKVIWVCV-SDTFDQIRI 258 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----~~~~~F~~~~wv~v-s~~~~~~~~ 258 (352)
.+++|.+..++.+.+.+.... -.....++|+.|+||||+|+.++..- ....|+|...|... +....+..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357898888888888885432 34677899999999999999888732 12346676666542 22233333
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChH-HHHHh-
Q 036619 259 AKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES-VARMM- 336 (352)
Q Consensus 259 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-va~~~- 336 (352)
.+++.+.+... -..+++-++|+|++...+...++.|...+.....++.+|++|.+.+ +...+
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22233322211 1135666778888877766789999999998888999988886653 22222
Q ss_pred CCCCeeeCCCCCCCc
Q 036619 337 GSTDIISIEQLAEEE 351 (352)
Q Consensus 337 ~~~~~~~l~~L~~~e 351 (352)
+-...+++.++++++
T Consensus 142 SRc~~~~~~~~~~~~ 156 (313)
T PRK05564 142 SRCQIYKLNRLSKEE 156 (313)
T ss_pred hhceeeeCCCcCHHH
Confidence 225678888887654
No 23
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.59 E-value=7.5e-06 Score=81.47 Aligned_cols=162 Identities=21% Similarity=0.260 Sum_probs=99.3
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccC---CeEEEEEeCC---CCCHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSD---TFDQIR 257 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~---~~~~~~ 257 (352)
+.++|+...+..+...+... ....+.|+|++|+||||||+.+++......++ ....|+.+.. ..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 35889999988888777432 24568899999999999999998764333333 1234555432 112222
Q ss_pred HHHHH---------------HHHhCCCC----------------CCccc-HHHHHHHHHHhcCCceEEEEecCCCCCCcc
Q 036619 258 IAKAI---------------IEGLGKSA----------------SGLNE-FQSLMSRIQSSIKGKKNFLVLDDVWDGDYN 305 (352)
Q Consensus 258 ~~~~i---------------~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~ 305 (352)
+...+ +...+... +.... ....+..|.+.+++++++++.|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 11111100 00111 134578889999999999998888887767
Q ss_pred ChhHHHHhhccCCCCcEEEE--ecCChH-HHHHh-CCCCeeeCCCCCCCc
Q 036619 306 KWQPFFRCLKNGLHGSKILV--TTRNES-VARMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 306 ~~~~l~~~l~~~~~gs~Iiv--TTR~~~-va~~~-~~~~~~~l~~L~~~e 351 (352)
.|+.++..+..+.+...|++ ||++.. +...+ .....+.+.+++.+|
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~ed 357 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPED 357 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHH
Confidence 89999888887766665665 566443 22222 223466777777654
No 24
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.58 E-value=3.9e-07 Score=79.42 Aligned_cols=128 Identities=19% Similarity=0.287 Sum_probs=72.5
Q ss_pred chHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 036619 191 DEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSA 270 (352)
Q Consensus 191 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 270 (352)
..++.+..++.. .....+.|+|++|+|||+||+.+++.. .......++++++.-.+ ..
T Consensus 24 ~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~------~~-------- 81 (226)
T TIGR03420 24 ELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQ------AD-------- 81 (226)
T ss_pred HHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHH------hH--------
Confidence 345566665432 235678899999999999999999852 22333455565443211 00
Q ss_pred CCcccHHHHHHHHHHhcCCceEEEEecCCCCCCcc-Ch-hHHHHhhcc-CCCCcEEEEecCChH---------HHHHhCC
Q 036619 271 SGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYN-KW-QPFFRCLKN-GLHGSKILVTTRNES---------VARMMGS 338 (352)
Q Consensus 271 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~IivTTR~~~---------va~~~~~ 338 (352)
..+...+.+ .-+|||||++..... .| ..+...+.. ...+..+|+||+... +...+..
T Consensus 82 ----------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 82 ----------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred ----------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc
Confidence 011112222 238999999765332 23 345555442 123447888887532 2223333
Q ss_pred CCeeeCCCCCCCc
Q 036619 339 TDIISIEQLAEEE 351 (352)
Q Consensus 339 ~~~~~l~~L~~~e 351 (352)
...+++.+|++++
T Consensus 151 ~~~i~l~~l~~~e 163 (226)
T TIGR03420 151 GLVFQLPPLSDEE 163 (226)
T ss_pred CeeEecCCCCHHH
Confidence 4678899988653
No 25
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=6.1e-07 Score=88.74 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=89.4
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+..++.|.+++.... -...+.++|..|+||||+|+.+.+.-.....+. +..+..-..+..|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 468999999999999886533 245567999999999999998876422111110 01111111111221
Q ss_pred HHh-----CCCCCCcccHHHHHHHHHHh----cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh-HHH
Q 036619 264 EGL-----GKSASGLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVA 333 (352)
Q Consensus 264 ~~l-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va 333 (352)
..- ..........+++...+... ..++.-++|||++...+...|+.|+..+..-....++|+||.+. .+.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 100 00000011122222222221 13455689999998887677899988887766677777766654 443
Q ss_pred HHhCC-CCeeeCCCCCCCc
Q 036619 334 RMMGS-TDIISIEQLAEEE 351 (352)
Q Consensus 334 ~~~~~-~~~~~l~~L~~~e 351 (352)
..+-+ ...|++.+|+.++
T Consensus 164 ~TIrSRCq~f~Fk~Ls~ee 182 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGH 182 (830)
T ss_pred chhhhheEEEecCCcCHHH
Confidence 33322 5678888887654
No 26
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1e-06 Score=82.30 Aligned_cols=156 Identities=19% Similarity=0.287 Sum_probs=88.2
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+.-++.+.+.+.... -...+.++|+.|+||||+|+.+.+.-.....+. ..++..-.....+.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 468999999999888886532 245678999999999999999987422111110 00111001111111
Q ss_pred HHhCCC-----C---CCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC-hHHH
Q 036619 264 EGLGKS-----A---SGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVA 333 (352)
Q Consensus 264 ~~l~~~-----~---~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~va 333 (352)
...... . ....+..++...+... ..+++-++|||++.......++.+...+.......++|++|.+ ..+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 110000 0 0111122222222111 1345669999999887655688888888776667777776644 3444
Q ss_pred HHh-CCCCeeeCCCCCCCc
Q 036619 334 RMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~e 351 (352)
..+ +-...+++.+++.++
T Consensus 164 ~tI~SRc~~~~~~~l~~~e 182 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEK 182 (363)
T ss_pred HHHHhhceEEeCCCCCHHH
Confidence 333 225678999988664
No 27
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.53 E-value=1.3e-06 Score=87.22 Aligned_cols=142 Identities=13% Similarity=0.093 Sum_probs=87.8
Q ss_pred CCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhh---hccCC--eEEEEEeCCCCCHHH
Q 036619 183 EGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEV---KRNFE--KVIWVCVSDTFDQIR 257 (352)
Q Consensus 183 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~ 257 (352)
+..+.||++|+++|...|...-.+ .....++-|+|++|.|||++++.|.+.-.. ..... ..++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 357899999999999888653321 123467789999999999999999875221 11222 356777777677888
Q ss_pred HHHHHHHHhCCCCC-CcccHHHHHHHHHHhc-C--CceEEEEecCCCCCCccChhHHHHhhcc-CCCCcEEEE
Q 036619 258 IAKAIIEGLGKSAS-GLNEFQSLMSRIQSSI-K--GKKNFLVLDDVWDGDYNKWQPFFRCLKN-GLHGSKILV 325 (352)
Q Consensus 258 ~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l-~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~Iiv 325 (352)
++..|.+++....+ .......+...+...+ . ....+||||++..-....-+.|...|.. ...+++|+|
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEE
Confidence 89999988854432 2222333444454444 2 2245999999965421111234433332 234566554
No 28
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.50 E-value=6.8e-07 Score=82.80 Aligned_cols=159 Identities=15% Similarity=0.150 Sum_probs=83.4
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCC-eEEEEEeCCCCCHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 262 (352)
..++|++..++.|..++... ..+.+.++|++|+||||+|+.+.+... ...+. ..+.++++...+. ....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~--~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQ--GKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhc--chhhh
Confidence 45889999999988887543 234577999999999999999987421 12222 2334444331100 00000
Q ss_pred H------HHhCCC-CCCcccHHHHHHHHHH---hc--CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh
Q 036619 263 I------EGLGKS-ASGLNEFQSLMSRIQS---SI--KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE 330 (352)
Q Consensus 263 ~------~~l~~~-~~~~~~~~~~~~~l~~---~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (352)
. ..++.. .......+.+...++. .. .+.+-+|||||+..........|...+......+++|+||.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 000000 0000011122222222 11 2345589999996654344556666665544557787777543
Q ss_pred -HHHHHh-CCCCeeeCCCCCCCc
Q 036619 331 -SVARMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 331 -~va~~~-~~~~~~~l~~L~~~e 351 (352)
.+...+ .....+.+.+++.++
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~ 188 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDE 188 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHH
Confidence 222222 224567777777543
No 29
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=1e-07 Score=92.22 Aligned_cols=162 Identities=20% Similarity=0.220 Sum_probs=90.0
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+.....|.+++.... -...+.++|++|+||||+|+.+.+.-...+.+...+|.|.+... +.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 358998888888888776533 24567899999999999999998754333333333343321100 000000000
Q ss_pred HHhCCC-CCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEec-CChHHHHHhCC-C
Q 036619 264 EGLGKS-ASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT-RNESVARMMGS-T 339 (352)
Q Consensus 264 ~~l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~va~~~~~-~ 339 (352)
..+... .....+..++...+... ..+++-++|||+++......++.|...+......+.+|++| ....+...+.+ .
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 000000 00111122222222221 23566799999998776567888888887655555555555 44444433332 5
Q ss_pred CeeeCCCCCCCc
Q 036619 340 DIISIEQLAEEE 351 (352)
Q Consensus 340 ~~~~l~~L~~~e 351 (352)
..+++.+|++++
T Consensus 168 ~~~~f~~ls~~e 179 (504)
T PRK14963 168 QHFRFRRLTEEE 179 (504)
T ss_pred EEEEecCCCHHH
Confidence 678999888764
No 30
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=9.3e-07 Score=85.89 Aligned_cols=145 Identities=18% Similarity=0.271 Sum_probs=89.7
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhc-------------------cCCeE
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKV 244 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~ 244 (352)
.+++|.+..+..|.+.+.... -...+.++|+.|+||||+|+.+.+.-.... .|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468899999999988886432 245577899999999999999986321110 11122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEE
Q 036619 245 IWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKI 323 (352)
Q Consensus 245 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I 323 (352)
+++.......+ .+...+...+... ..+++-++|+|++...+...++.|+..+......+.+
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22222111111 1222333333221 2456679999999877766788899988876666666
Q ss_pred EE-ecCChHHHHHh-CCCCeeeCCCCCCCc
Q 036619 324 LV-TTRNESVARMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 324 iv-TTR~~~va~~~-~~~~~~~l~~L~~~e 351 (352)
|+ ||....+...+ +-...+++.+|+.++
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~e 182 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQAD 182 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHH
Confidence 54 55444444333 336788999887654
No 31
>PLN03025 replication factor C subunit; Provisional
Probab=98.47 E-value=9.8e-07 Score=81.08 Aligned_cols=147 Identities=16% Similarity=0.190 Sum_probs=81.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCC-eEEEEEeCCCCCHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 262 (352)
.+++|.++.+..|..++... ....+.++|++|+||||+|+.+.+.- ....|. ..+-++.++..+.. ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 35788888777777766432 23446799999999999999998742 112222 12222333322221 12222
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC-hHHHHHhC-CCC
Q 036619 263 IEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARMMG-STD 340 (352)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~va~~~~-~~~ 340 (352)
++.+...... .-.++.-+++||++........+.|...+......+++|+++.. ..+-..+. -..
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2211110000 00245679999999877655566676666554456777766643 23322221 245
Q ss_pred eeeCCCCCCCc
Q 036619 341 IISIEQLAEEE 351 (352)
Q Consensus 341 ~~~l~~L~~~e 351 (352)
.+++.++++++
T Consensus 152 ~i~f~~l~~~~ 162 (319)
T PLN03025 152 IVRFSRLSDQE 162 (319)
T ss_pred cccCCCCCHHH
Confidence 78888887654
No 32
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=1e-06 Score=86.04 Aligned_cols=161 Identities=16% Similarity=0.180 Sum_probs=89.7
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+..++.|.+.+.... -...+.++|..|+||||+|+.+.+.-.....-...- + .+..+..-.....|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHH
Confidence 468999999999999886543 245678999999999999998876422110000000 0 000111111111111
Q ss_pred HH-----hCCCCCCcccHHHHHHHHHHh----cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEE-EEecCChHHH
Q 036619 264 EG-----LGKSASGLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKI-LVTTRNESVA 333 (352)
Q Consensus 264 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I-ivTTR~~~va 333 (352)
.. +..........+++.+.+... ..++.-++|||++...+...++.|+..|..-..++++ ++||....+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 10 000000111223322222221 2456679999999988777888888888765455554 5555555665
Q ss_pred HHhCC-CCeeeCCCCCCCc
Q 036619 334 RMMGS-TDIISIEQLAEEE 351 (352)
Q Consensus 334 ~~~~~-~~~~~l~~L~~~e 351 (352)
..+-+ ...|++.+++.++
T Consensus 169 pTIrSRCq~f~f~~ls~ee 187 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGH 187 (700)
T ss_pred hHHHHHHHhcccCCCChHH
Confidence 44433 5677888877654
No 33
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.46 E-value=4.8e-07 Score=83.65 Aligned_cols=90 Identities=16% Similarity=0.073 Sum_probs=63.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCccc------HHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT--FDQIRIAKAIIEGLGKSASGLNE------FQSLMSR 282 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~------~~~~~~~ 282 (352)
-..++|+|++|+|||||++.+++... .+||+..+||.+++. .++.++++.|+..+-...-+... ...+...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 46788999999999999999999643 347999999999876 78899998885443222111111 1222233
Q ss_pred HHHh-cCCceEEEEecCCCC
Q 036619 283 IQSS-IKGKKNFLVLDDVWD 301 (352)
Q Consensus 283 l~~~-l~~kr~LlVlDdvw~ 301 (352)
...+ -++++.+|++|++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 3333 268999999999953
No 34
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=1.2e-06 Score=88.20 Aligned_cols=156 Identities=15% Similarity=0.250 Sum_probs=90.0
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..++|.+.-+..|.+++.... -...+.++|+.|+||||+|+.+.+.-....... .. ++..-.....|.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~------~~-pCg~C~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVT------AT-PCGVCSSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCC------CC-CCCCchHHHHHh
Confidence 468999999999988886533 235567999999999999999987421111100 00 000000011111
Q ss_pred HHh-------CCC-CCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEec-CChHHH
Q 036619 264 EGL-------GKS-ASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT-RNESVA 333 (352)
Q Consensus 264 ~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~va 333 (352)
... ... ..+..++.++...+... ..+++-++|||++.......++.|+..+.......++|++| ....+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 100 000 01111222233222211 24677799999998887778888888887655566665554 445554
Q ss_pred HHh-CCCCeeeCCCCCCCc
Q 036619 334 RMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~e 351 (352)
..+ .-...|++.+|+.++
T Consensus 164 ~TIlSRCq~f~fkpLs~eE 182 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDE 182 (944)
T ss_pred HHHHHhheEEeCCCCCHHH
Confidence 333 235679999998654
No 35
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.44 E-value=5.5e-07 Score=90.51 Aligned_cols=135 Identities=21% Similarity=0.358 Sum_probs=76.3
Q ss_pred CccccccchHH---HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHH
Q 036619 184 GEVCGRVDEKS---ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAK 260 (352)
Q Consensus 184 ~~~~gr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 260 (352)
.+++|.+..+. .+...+.. .....+.++|++|+||||||+.+++. ...+|. .++.+. ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhh-----
Confidence 35788877664 34444433 23556789999999999999999974 333441 111110 000
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhc--CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEE--ecCChH--HHH
Q 036619 261 AIIEGLGKSASGLNEFQSLMSRIQSSI--KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILV--TTRNES--VAR 334 (352)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~--va~ 334 (352)
.+...........+ .+++.+|||||++..+...++.|...+. .|+.+++ ||.+.. +..
T Consensus 91 -------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 91 -------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred -------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 11111222222222 2467799999998765555666665554 3565555 344432 222
Q ss_pred Hh-CCCCeeeCCCCCCCc
Q 036619 335 MM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 335 ~~-~~~~~~~l~~L~~~e 351 (352)
.+ +-...+.+.+|+.++
T Consensus 155 aL~SR~~v~~l~pLs~ed 172 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDED 172 (725)
T ss_pred HhhccccceecCCCCHHH
Confidence 22 225678999998764
No 36
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.41 E-value=5.7e-07 Score=82.98 Aligned_cols=50 Identities=30% Similarity=0.370 Sum_probs=38.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..|+|+++.++.+..++..... .......+.|+|++|+|||+||+.+.+.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 5699999999998877753211 1134567789999999999999999985
No 37
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=2.1e-06 Score=84.01 Aligned_cols=156 Identities=18% Similarity=0.209 Sum_probs=90.0
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+.....|.+++.... -...+.++|+.|+||||+|+.+.+.-.... |+.. .+++.-...+.|.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 468999999999999886543 246778999999999999998876421111 1111 1111111111111
Q ss_pred HHhCC-----CCCCcccHHHHH---HHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh-HHH
Q 036619 264 EGLGK-----SASGLNEFQSLM---SRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVA 333 (352)
Q Consensus 264 ~~l~~-----~~~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va 333 (352)
..-.. ........+++. ..+... ..++.-++|||++...+....+.|...+.....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 10000 000011222222 222111 23566799999998876667888888887766667777766553 333
Q ss_pred HH-hCCCCeeeCCCCCCCc
Q 036619 334 RM-MGSTDIISIEQLAEEE 351 (352)
Q Consensus 334 ~~-~~~~~~~~l~~L~~~e 351 (352)
.. .+-...+++.+|+.++
T Consensus 163 ~TIlSRCq~feFkpLs~eE 181 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDE 181 (702)
T ss_pred HHHHHhhheeeccCCCHHH
Confidence 22 2335678888888654
No 38
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.40 E-value=1.1e-06 Score=80.15 Aligned_cols=153 Identities=20% Similarity=0.137 Sum_probs=79.6
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+|+|+++.+++|..++..... ....+..+.++|++|+|||+||+.+.+.. ...| ..++.+...... .+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCch-hHHHHH
Confidence 4689999999999888853221 11335567899999999999999998742 2221 122221111111 222223
Q ss_pred HHhCCCCC-CcccH----HHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHHHHhCC
Q 036619 264 EGLGKSAS-GLNEF----QSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVARMMGS 338 (352)
Q Consensus 264 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~ 338 (352)
..+..... -.++. ......+...+.+.+..+|+++.... ..|.. .+ .+.+-|..||+...+...+-.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~~---~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVRL---DL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cceee---cC---CCeEEEEecCCccccCHHHHh
Confidence 33322110 00010 11233455555556666666655332 11211 11 224556667776554443211
Q ss_pred --CCeeeCCCCCCCc
Q 036619 339 --TDIISIEQLAEEE 351 (352)
Q Consensus 339 --~~~~~l~~L~~~e 351 (352)
...+++++++++|
T Consensus 149 R~~~~~~l~~l~~~e 163 (305)
T TIGR00635 149 RFGIILRLEFYTVEE 163 (305)
T ss_pred hcceEEEeCCCCHHH
Confidence 3567888888765
No 39
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.40 E-value=8.1e-06 Score=80.95 Aligned_cols=130 Identities=23% Similarity=0.305 Sum_probs=89.9
Q ss_pred HHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC
Q 036619 193 KSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFDQIRIAKAIIEGLGKSAS 271 (352)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~ 271 (352)
+.+|++.|... .+.+.+.|..++|.|||||+-..... ...=..+.|.++.. +.+...+++.++..++.-.+
T Consensus 24 R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p 95 (894)
T COG2909 24 RPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDNDPARFLSYLIAALQQATP 95 (894)
T ss_pred cHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCc
Confidence 44577777543 35799999999999999999888751 22234699999866 56788999999988875433
Q ss_pred Cc-------------ccHHHHHHHHHHhcC--CceEEEEecCCCCCCccChhH-HHHhhccCCCCcEEEEecCCh
Q 036619 272 GL-------------NEFQSLMSRIQSSIK--GKKNFLVLDDVWDGDYNKWQP-FFRCLKNGLHGSKILVTTRNE 330 (352)
Q Consensus 272 ~~-------------~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~~-l~~~l~~~~~gs~IivTTR~~ 330 (352)
.. .+...+...+..-|. .++.++||||..-........ +...+...+.+-.+|||||+.
T Consensus 96 ~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 96 TLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 22 123334444444342 467999999987654445554 444455667788999999986
No 40
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.39 E-value=1.8e-06 Score=81.18 Aligned_cols=120 Identities=14% Similarity=0.163 Sum_probs=77.7
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..+++.++..+.++..|.. .+.+.++|++|+|||++|+.+++......+|+.+.||++++.++...++..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 4578888899999998864 2457789999999999999999865445578899999999988877665322
Q ss_pred HHhCCCCCCcccH-HHHHHHHHHhc--CCceEEEEecCCCCCCccC-hhHHHHhhc
Q 036619 264 EGLGKSASGLNEF-QSLMSRIQSSI--KGKKNFLVLDDVWDGDYNK-WQPFFRCLK 315 (352)
Q Consensus 264 ~~l~~~~~~~~~~-~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~-~~~l~~~l~ 315 (352)
.....+-.-. .-+.+.+.... .+++++||||++...+.+. +..+...+.
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1111110000 11122222222 2468999999996654332 455555443
No 41
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=3.2e-06 Score=81.68 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=90.6
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCe-EEEEEeCCCCCHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK-VIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i 262 (352)
.+++|.+..+..|.+.+.... -...+.++|+.|+||||+|+.+++.-.....+.. ..+..+ ..-.....|
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C----~~C~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC----EQCTNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC----CCChHHHHH
Confidence 458899888888888775432 2457789999999999999999874221111100 000000 000111111
Q ss_pred HHHhCC--------CCCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEE-EecCChHH
Q 036619 263 IEGLGK--------SASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKIL-VTTRNESV 332 (352)
Q Consensus 263 ~~~l~~--------~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v 332 (352)
...... ...+..++..+.+..... +.+++-++|+|+++......|+.|...+......+.+| .||+.+.+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 111000 001112222222222211 24667799999998876677899988888765666655 46666666
Q ss_pred HHHhCC-CCeeeCCCCCCCc
Q 036619 333 ARMMGS-TDIISIEQLAEEE 351 (352)
Q Consensus 333 a~~~~~-~~~~~l~~L~~~e 351 (352)
...+.. ...+++.+++.++
T Consensus 172 ~~tI~SRc~~~ef~~ls~~e 191 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEE 191 (507)
T ss_pred hHHHHhcceEEEccCCCHHH
Confidence 654433 5678888887654
No 42
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.37 E-value=3.9e-06 Score=77.06 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=80.7
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEe--CCCCCHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV--SDTFDQIRIAKA 261 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~ 261 (352)
.+++|+++.++.+..++.... .+.+.++|.+|+||||+++.+.+.- ....+. ..++.+ +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~------~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN------MPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-HHHH
Confidence 458899999999998885432 3346899999999999999998752 111221 112222 2222211 1111
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh-HHHHHh-CCC
Q 036619 262 IIEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVARMM-GST 339 (352)
Q Consensus 262 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va~~~-~~~ 339 (352)
.+..+....+ .....+-+|++|++..........|...+......+.+|+++... .+...+ ...
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111110000 001345689999986654445566777776555566777766432 222211 123
Q ss_pred CeeeCCCCCCCc
Q 036619 340 DIISIEQLAEEE 351 (352)
Q Consensus 340 ~~~~l~~L~~~e 351 (352)
..+++.++++++
T Consensus 154 ~~~~~~~l~~~e 165 (319)
T PRK00440 154 AVFRFSPLKKEA 165 (319)
T ss_pred heeeeCCCCHHH
Confidence 467777777654
No 43
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=2.9e-06 Score=81.48 Aligned_cols=145 Identities=19% Similarity=0.239 Sum_probs=81.3
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhcc--C-----------------CeE
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN--F-----------------EKV 244 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F-----------------~~~ 244 (352)
.+++|.+.....|...+.... -...+.++|++|+||||+|+.+.+.-..... + ...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468998877777777665432 2356789999999999999999874211110 0 011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEE
Q 036619 245 IWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKI 323 (352)
Q Consensus 245 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I 323 (352)
..++.+...... +...+...+... ..+++-++|+|+++.......+.|...+........+
T Consensus 89 ~el~aa~~~gid------------------~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGID------------------EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHH------------------HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 112221111111 111111211111 2356679999999765445566777777654444444
Q ss_pred EEecCC-hHHHHHhC-CCCeeeCCCCCCCc
Q 036619 324 LVTTRN-ESVARMMG-STDIISIEQLAEEE 351 (352)
Q Consensus 324 ivTTR~-~~va~~~~-~~~~~~l~~L~~~e 351 (352)
|++|.+ ..+...+. ....+++.++++++
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~e 180 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDEL 180 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHH
Confidence 444433 44544433 35678888887654
No 44
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=2.1e-06 Score=81.18 Aligned_cols=163 Identities=15% Similarity=0.209 Sum_probs=88.2
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEE-eCCCCCHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC-VSDTFDQIRIAKAI 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 262 (352)
.+++|.+.-++.|.+++.... -...+.++|+.|+||||+|..+.+.-.....+....|.. ...++..-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468898888888888775432 234577999999999999998876422211111111110 01111111122222
Q ss_pred HHHhCCC-----CCCcccHHHHHHHHHHh----cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEec-CChHH
Q 036619 263 IEGLGKS-----ASGLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT-RNESV 332 (352)
Q Consensus 263 ~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v 332 (352)
....... .......+++.+.+... ..+++-++|+|++.......++.+...+....+.+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 2111110 00111123333222111 23556688999998776567888988888766677666554 44444
Q ss_pred HHHhCC-CCeeeCCCCCCCc
Q 036619 333 ARMMGS-TDIISIEQLAEEE 351 (352)
Q Consensus 333 a~~~~~-~~~~~l~~L~~~e 351 (352)
...+.. ...+++.++++++
T Consensus 171 ~~tl~sR~~~v~f~~l~~~e 190 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEE 190 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHH
Confidence 433221 3467777777553
No 45
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=3e-06 Score=83.45 Aligned_cols=159 Identities=14% Similarity=0.185 Sum_probs=88.6
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccC--CeEEEEEeCCCCCHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFDQIRIAKA 261 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~ 261 (352)
.+++|.+..+..|.+++.... -...+.++|+.|+||||+|+.+.+.-...... ...- ..+++.-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHH
Confidence 468998888888888886543 24667899999999999999886532111100 0000 011111122222
Q ss_pred HHHHhCC-----CCCCcccHHHHHHHHHHh----cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEec-CChH
Q 036619 262 IIEGLGK-----SASGLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT-RNES 331 (352)
Q Consensus 262 i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~ 331 (352)
|...-.. ........+++.+.+... ..++.-++|||+++..+...++.|+..+......+++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 2110000 000111222222222211 13445589999999887778888888887655566665554 4445
Q ss_pred HHHHh-CCCCeeeCCCCCCCc
Q 036619 332 VARMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 332 va~~~-~~~~~~~l~~L~~~e 351 (352)
+...+ +-...+++.+|++++
T Consensus 167 il~TIlSRc~~~~f~~Ls~ee 187 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPET 187 (618)
T ss_pred hhHHHHHhceeeecCCCCHHH
Confidence 44333 336788999988754
No 46
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.33 E-value=6.1e-06 Score=72.35 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=66.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
...+.|+|+.|+|||+|++.+++.. ...-..+.++++..... ...++.+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~~----- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW--------------------FVPEVLEGMEQ----- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh--------------------hhHHHHHHhhh-----
Confidence 3578899999999999999999852 22233456666543110 00111111111
Q ss_pred eEEEEecCCCCCC-ccChhH-HHHhhccC-CCC-cEEEEecCCh---------HHHHHhCCCCeeeCCCCCCCc
Q 036619 291 KNFLVLDDVWDGD-YNKWQP-FFRCLKNG-LHG-SKILVTTRNE---------SVARMMGSTDIISIEQLAEEE 351 (352)
Q Consensus 291 r~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~g-s~IivTTR~~---------~va~~~~~~~~~~l~~L~~~e 351 (352)
--+|+|||+.... ...|+. +...+... ..| .++|+||+.. ++...+....++++.++++++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEE 171 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHH
Confidence 2389999996542 134543 33333221 123 3699998754 445555667889999987653
No 47
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=3.5e-06 Score=81.76 Aligned_cols=156 Identities=16% Similarity=0.210 Sum_probs=87.6
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+..+..|.+++.... -...+.++|+.|+||||+|+.+...-.....+. ..+++.-.....|.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~ 83 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-------ANPCNDCENCREID 83 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------cccCCCCHHHHHHh
Confidence 468999999999999996533 245678999999999999998886422111111 00111111111111
Q ss_pred HHhCC-----CCCCcccHHHH---HHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEec-CChHHH
Q 036619 264 EGLGK-----SASGLNEFQSL---MSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT-RNESVA 333 (352)
Q Consensus 264 ~~l~~-----~~~~~~~~~~~---~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~va 333 (352)
..-.. ........+++ ...+... ..++.-++|||++........+.|...+......+++|++| ....+.
T Consensus 84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~ 163 (509)
T PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163 (509)
T ss_pred cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhch
Confidence 10000 00011112222 2221111 13566689999998877677888888888766677666654 444444
Q ss_pred HHh-CCCCeeeCCCCCCCc
Q 036619 334 RMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~e 351 (352)
..+ +-...+++.+++.++
T Consensus 164 ~tI~SRc~~~~f~~l~~~~ 182 (509)
T PRK14958 164 VTVLSRCLQFHLAQLPPLQ 182 (509)
T ss_pred HHHHHHhhhhhcCCCCHHH
Confidence 333 224567788777543
No 48
>PRK04195 replication factor C large subunit; Provisional
Probab=98.30 E-value=5.1e-06 Score=80.68 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=83.1
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+..+++|.+|+.....+ ...+.+.|+|++|+||||+|+.+++.. .|+ .+-++.++..+.. .+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g--~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG--KPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHHH
Confidence 46899999999999998653311 236788999999999999999999853 232 2334444433222 222322
Q ss_pred HHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCc----cChhHHHHhhccCCCCcEEEEecCCh-HHHH-Hh-
Q 036619 264 EGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDY----NKWQPFFRCLKNGLHGSKILVTTRNE-SVAR-MM- 336 (352)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~----~~~~~l~~~l~~~~~gs~IivTTR~~-~va~-~~- 336 (352)
....... .....++-+||||+++.... ..+..|...+... +..||+|+-+. .... .+
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhHh
Confidence 2211100 01113678999999976432 2356666666533 33466655332 2211 12
Q ss_pred CCCCeeeCCCCCCC
Q 036619 337 GSTDIISIEQLAEE 350 (352)
Q Consensus 337 ~~~~~~~l~~L~~~ 350 (352)
.....+++.+++.+
T Consensus 150 sr~~~I~f~~~~~~ 163 (482)
T PRK04195 150 NACLMIEFKRLSTR 163 (482)
T ss_pred ccceEEEecCCCHH
Confidence 22456777777654
No 49
>PRK08727 hypothetical protein; Validated
Probab=98.27 E-value=8e-06 Score=71.51 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=65.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCce
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKK 291 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (352)
..+.|+|..|+|||+|++.+++. ..+......|+++.+ ....+. ..+. .+ .+-
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~-~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DALE-AL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHHH-HH-hcC
Confidence 44889999999999999999885 333333556665432 111111 1111 11 123
Q ss_pred EEEEecCCCCCC-ccChhH-HHHhhcc-CCCCcEEEEecCCh---------HHHHHhCCCCeeeCCCCCCCc
Q 036619 292 NFLVLDDVWDGD-YNKWQP-FFRCLKN-GLHGSKILVTTRNE---------SVARMMGSTDIISIEQLAEEE 351 (352)
Q Consensus 292 ~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~IivTTR~~---------~va~~~~~~~~~~l~~L~~~e 351 (352)
-+|||||+.... ...|.. +...+.. ..+|..||+|++.. ++...+.....++++++++++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~ 166 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVA 166 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHH
Confidence 489999996532 123443 3333322 12356699999853 333344446688898887653
No 50
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=8.1e-06 Score=78.32 Aligned_cols=145 Identities=16% Similarity=0.177 Sum_probs=87.5
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhh-------------------ccCCeE
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK-------------------RNFEKV 244 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F~~~ 244 (352)
.+++|.+...+.|.+.+.... -...+.++|+.|+||||+|+.+...-... ..+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468998888888887775432 24578899999999999998887521100 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEE
Q 036619 245 IWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKI 323 (352)
Q Consensus 245 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I 323 (352)
+.++.+....+.. ..++.+.+... +.++.-++|+|++........+.|...+....+.+++
T Consensus 88 ~eidaas~~~vdd------------------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDD------------------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHH------------------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 2333332222222 12222222111 1356668999999776656788888888876667766
Q ss_pred EEec-CChHHHHHhC-CCCeeeCCCCCCCc
Q 036619 324 LVTT-RNESVARMMG-STDIISIEQLAEEE 351 (352)
Q Consensus 324 ivTT-R~~~va~~~~-~~~~~~l~~L~~~e 351 (352)
|++| ..+.+...+. -...+++.+++.++
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~e 179 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDK 179 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHH
Confidence 6554 4556655443 35678888877653
No 51
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=6.7e-06 Score=81.31 Aligned_cols=156 Identities=18% Similarity=0.245 Sum_probs=91.5
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+.-+..|.+.+.... -...+.++|+.|+||||+|+.+.+.-.....+ ...++..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHH
Confidence 468999998888888886533 23556799999999999999998642221110 011111112222222
Q ss_pred HHhCC-----CC---CCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEE-ecCChHHH
Q 036619 264 EGLGK-----SA---SGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILV-TTRNESVA 333 (352)
Q Consensus 264 ~~l~~-----~~---~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~va 333 (352)
..-.. .. ....+..++...+... ..+++-++|||++...+....+.|+..+.......++|+ ||....+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 11000 00 1112222333332221 246677999999998877788889888877655665555 44445554
Q ss_pred HHh-CCCCeeeCCCCCCCc
Q 036619 334 RMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~e 351 (352)
..+ +-...|++.+|+.++
T Consensus 164 ~TI~SRC~~~~f~~Ls~~e 182 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQ 182 (647)
T ss_pred hHHHhhheEeeCCCCCHHH
Confidence 333 225678999998764
No 52
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=8.6e-06 Score=76.47 Aligned_cols=160 Identities=11% Similarity=0.104 Sum_probs=87.4
Q ss_pred CccccccchHHHHHHHHcCcccc----CCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSE----QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIA 259 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 259 (352)
..++|.+.-++.|.+.+...... +..-..-+.++|+.|+|||++|+.+...-.....- + .+++.-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~----~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----E----PGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----C----CCCCCCHHH
Confidence 35889888888888888654310 00134668899999999999999887531111100 0 000000111
Q ss_pred HHHHHHhCCC-----CC-CcccHHH---HHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC
Q 036619 260 KAIIEGLGKS-----AS-GLNEFQS---LMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN 329 (352)
Q Consensus 260 ~~i~~~l~~~-----~~-~~~~~~~---~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (352)
+.+...-... +. .....++ +.+.+... ..+++-++++|++...+....+.|...+.....+..+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 1111100000 00 0011222 22222111 1345568889999888766777788888766566666666555
Q ss_pred -hHHHHHhCC-CCeeeCCCCCCCc
Q 036619 330 -ESVARMMGS-TDIISIEQLAEEE 351 (352)
Q Consensus 330 -~~va~~~~~-~~~~~l~~L~~~e 351 (352)
..+...+-+ ...+++.+++.++
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~ 180 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEA 180 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHH
Confidence 455544332 5678888887654
No 53
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=6.3e-06 Score=84.02 Aligned_cols=155 Identities=15% Similarity=0.184 Sum_probs=88.8
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+..++.|.+.+.... -...+.++|+.|+||||+|+.+.+.-...+.... ..++.-...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 468999998999988886533 2356789999999999999998765322111100 0001001111111
Q ss_pred HH---------hCC-CCCCcccHHHHHHHHHH-hcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEec-CChH
Q 036619 264 EG---------LGK-SASGLNEFQSLMSRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT-RNES 331 (352)
Q Consensus 264 ~~---------l~~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~ 331 (352)
.. +.. ...+.+++.++...+.. -..++.-++|||++.......++.|+..+..-...+.+|++| ..+.
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 11 000 00011112222222211 124566688999999887778889999998766666665544 4455
Q ss_pred HHHHhCC-CCeeeCCCCCCC
Q 036619 332 VARMMGS-TDIISIEQLAEE 350 (352)
Q Consensus 332 va~~~~~-~~~~~l~~L~~~ 350 (352)
+...+.+ ...|++.+|+.+
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~ 182 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPE 182 (824)
T ss_pred hhHHHHhheeEEEeeCCCHH
Confidence 5544433 567888888654
No 54
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.24 E-value=1.5e-05 Score=74.38 Aligned_cols=144 Identities=12% Similarity=0.215 Sum_probs=84.0
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhh--------------------ccCCe
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK--------------------RNFEK 243 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~F~~ 243 (352)
..++|.+..++.|.+++.... -...+.++|++|+||||+|+.+...-... .+|+.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 468999999999998886432 24577899999999999998887642111 02221
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcE
Q 036619 244 VIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSK 322 (352)
Q Consensus 244 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 322 (352)
.++..+..... .+..++.+.+... ..+++-++|+|++........+.+...+......+.
T Consensus 89 -~~~~~~~~~~~------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGV------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 22221111111 1122222222211 234556889999866554567778888866556677
Q ss_pred EEEecCChH-HHHHh-CCCCeeeCCCCCCCc
Q 036619 323 ILVTTRNES-VARMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 323 IivTTR~~~-va~~~-~~~~~~~l~~L~~~e 351 (352)
+|++|.+.. +...+ .....+++.++++++
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~ 180 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLED 180 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHH
Confidence 666665443 33322 224567777776543
No 55
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=3.2e-06 Score=80.35 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=88.8
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+.+.-....... ...+....+ ...|.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~s----C~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTS----CLEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcH----HHHHH
Confidence 468999888888888886533 134678999999999999999987421111000 000111111 11222
Q ss_pred HHhCCC--------CCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEE-EecCChHHH
Q 036619 264 EGLGKS--------ASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKIL-VTTRNESVA 333 (352)
Q Consensus 264 ~~l~~~--------~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTTR~~~va 333 (352)
...... ..+..+..++...+... ..++.-++|||++.......++.|+..+........+| .||....+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 211110 01112223333333322 24566699999998877778888888886654455544 455555554
Q ss_pred HHhCC-CCeeeCCCCCCC
Q 036619 334 RMMGS-TDIISIEQLAEE 350 (352)
Q Consensus 334 ~~~~~-~~~~~l~~L~~~ 350 (352)
..+.+ ...|.+.+++.+
T Consensus 166 ~TI~SRCq~~~f~~ls~~ 183 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLS 183 (484)
T ss_pred HHHHhhhheeeecCCCHH
Confidence 44433 567888888754
No 56
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=4e-06 Score=81.83 Aligned_cols=156 Identities=15% Similarity=0.209 Sum_probs=88.1
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..++|++..+..|.+.+.... -...+.++|+.|+||||+|+.+.+.-.. .-|.... +++.-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C------~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINC------LNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcC------CCCCCCC-CCcccHHHHHHH
Confidence 468999999999998885533 2356789999999999999998864211 1122111 111112222222
Q ss_pred HHhCCC-----C---CCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEec-CChHHH
Q 036619 264 EGLGKS-----A---SGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT-RNESVA 333 (352)
Q Consensus 264 ~~l~~~-----~---~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~va 333 (352)
...... . .+..+...+...+... ..+++-++|+|++.......++.|...+......+.+|++| ....+-
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 211110 0 0111122222222221 12344579999998776667888888887655566555544 444554
Q ss_pred HHh-CCCCeeeCCCCCCCc
Q 036619 334 RMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~e 351 (352)
..+ +....+++.++++++
T Consensus 164 ~TI~SRcq~ieF~~Ls~~e 182 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSE 182 (605)
T ss_pred HHHHhhhhhcccCCCCHHH
Confidence 332 335678888887653
No 57
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=1.6e-05 Score=78.70 Aligned_cols=163 Identities=14% Similarity=0.226 Sum_probs=89.2
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEE-eCCCCCHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC-VSDTFDQIRIAKAI 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 262 (352)
..++|.+..+..|.+.+.... -...+.++|+.|+||||+|+.+.+.-.....++...|.. +..+++.-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468998888888888775432 235588999999999999988876422211111011111 01111111112222
Q ss_pred HHHhCCC-----CCCcccHHHHHHHHHHh----cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEE-ecCChHH
Q 036619 263 IEGLGKS-----ASGLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILV-TTRNESV 332 (352)
Q Consensus 263 ~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v 332 (352)
...-... .......+++...+... ..+.+-++|+|++........+.|...+......+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1110000 00111133333322222 235566889999987765667888888877655665554 5454555
Q ss_pred HHHh-CCCCeeeCCCCCCCc
Q 036619 333 ARMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 333 a~~~-~~~~~~~l~~L~~~e 351 (352)
...+ .....+++.+++.++
T Consensus 171 l~TI~SRc~~vef~~l~~~e 190 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDE 190 (620)
T ss_pred hHHHHhhceEEecCCCCHHH
Confidence 4433 336678888887653
No 58
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.19 E-value=9.5e-06 Score=70.77 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=60.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
...+.|+|..|+|||+||+.+++... ...+ ...+++...... . + ... ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~~------~----~------------------~~~-~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPLL------A----F------------------DFD-PE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhHH------H----H------------------hhc-cc
Confidence 45678999999999999999998521 2222 334444332110 0 0 111 23
Q ss_pred eEEEEecCCCCCCccChhHHHHhhccC-CCCc-EEEEecCChHHH--------HHhCCCCeeeCCCCCCC
Q 036619 291 KNFLVLDDVWDGDYNKWQPFFRCLKNG-LHGS-KILVTTRNESVA--------RMMGSTDIISIEQLAEE 350 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~IivTTR~~~va--------~~~~~~~~~~l~~L~~~ 350 (352)
.-+||+||+...+...-..+...+... ..|. .||+|++..... ..+.....+++.+|+++
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~ 160 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDA 160 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHH
Confidence 347899999654333333455555421 2344 366666643321 12233468889998864
No 59
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=1.1e-05 Score=79.61 Aligned_cols=144 Identities=14% Similarity=0.223 Sum_probs=82.7
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhcc-------------------CCeE
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-------------------FEKV 244 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~ 244 (352)
.+++|.+..+..|.+++.... -...+.++|+.|+||||+|+.+...-..... |--.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 468999999999999886533 2456789999999999999988764211111 1011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEE
Q 036619 245 IWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKI 323 (352)
Q Consensus 245 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I 323 (352)
+.+..+....+ .++.++...+... ..+++-++|||++...+....+.|+..+......+++
T Consensus 91 lEidaAs~~gV------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 91 LEIDAASNTGI------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred EEEeccccCCH------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 11211111111 1122222221111 2356678999999776555677788888665456666
Q ss_pred EEecCCh-HHHHHh-CCCCeeeCCCCCCC
Q 036619 324 LVTTRNE-SVARMM-GSTDIISIEQLAEE 350 (352)
Q Consensus 324 ivTTR~~-~va~~~-~~~~~~~l~~L~~~ 350 (352)
|++|.+. .+...+ +-...|++.+++.+
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~e 181 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQ 181 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHH
Confidence 6666443 333222 22345666677654
No 60
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.18 E-value=3.7e-05 Score=68.52 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=76.7
Q ss_pred hHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhc----cCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 036619 192 EKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFDQIRIAKAIIEGLG 267 (352)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 267 (352)
-+++|.++|..+.. ....-+.|||..|.|||++++.++...-... .--.++.|.+...++...+...|+.+++
T Consensus 45 ~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 45 ALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 34555555554432 4567789999999999999999986532111 1115777888899999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHhcCC-ceEEEEecCCCC
Q 036619 268 KSASGLNEFQSLMSRIQSSIKG-KKNFLVLDDVWD 301 (352)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~ 301 (352)
...........+...+...|+. +--+||||.+++
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 8866666666666666666643 455889999976
No 61
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.17 E-value=2.8e-05 Score=65.67 Aligned_cols=64 Identities=9% Similarity=0.222 Sum_probs=44.0
Q ss_pred CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh-HHHHHh-CCCCeeeCCCCCCCc
Q 036619 288 KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVARMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 288 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va~~~-~~~~~~~l~~L~~~e 351 (352)
.+.+-++|+|++.....+.++.|...+......+.+|++|.+. .+...+ .....+++.+++.++
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~ 159 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEA 159 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHH
Confidence 3566789999997766566888888887766666777766543 333322 225688899888654
No 62
>PRK05642 DNA replication initiation factor; Validated
Probab=98.16 E-value=2.1e-05 Score=68.92 Aligned_cols=114 Identities=16% Similarity=0.301 Sum_probs=66.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
...+.|+|..|+|||.|++.+++.. ...-..++|++..+ +... .. .+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhC
Confidence 3567899999999999999998742 22223466666432 1110 01 122222222
Q ss_pred eEEEEecCCCCC-CccChhH-HHHhhcc-CCCCcEEEEecCCh---------HHHHHhCCCCeeeCCCCCCCc
Q 036619 291 KNFLVLDDVWDG-DYNKWQP-FFRCLKN-GLHGSKILVTTRNE---------SVARMMGSTDIISIEQLAEEE 351 (352)
Q Consensus 291 r~LlVlDdvw~~-~~~~~~~-l~~~l~~-~~~gs~IivTTR~~---------~va~~~~~~~~~~l~~L~~~e 351 (352)
. +||+||+... ....|.. +...+.. ..+|..||+|+... ++...++...+++++++++++
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDED 170 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHH
Confidence 2 6889999643 2235554 5555542 23466788888753 233334445778888888754
No 63
>PRK08116 hypothetical protein; Validated
Probab=98.15 E-value=1.7e-05 Score=70.80 Aligned_cols=104 Identities=24% Similarity=0.253 Sum_probs=60.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCce
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKK 291 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (352)
.-+.++|.+|+|||.||..+++. ...+...+++++ ...++..|........ ..+. ..+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~----~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDE----NEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccH----HHHHHHhcCCC
Confidence 34779999999999999999985 332334456665 3345555555443211 1111 12233334333
Q ss_pred EEEEecCCCCCCccChhH--HHHhhcc-CCCCcEEEEecCCh
Q 036619 292 NFLVLDDVWDGDYNKWQP--FFRCLKN-GLHGSKILVTTRNE 330 (352)
Q Consensus 292 ~LlVlDdvw~~~~~~~~~--l~~~l~~-~~~gs~IivTTR~~ 330 (352)
||||||+.......|.. |...+.. -.+|..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996554445543 4444432 13456688888753
No 64
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.15 E-value=1.5e-05 Score=72.28 Aligned_cols=111 Identities=21% Similarity=0.266 Sum_probs=82.3
Q ss_pred CCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 036619 183 EGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 183 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 262 (352)
++.+.+|+.+...+..++-+.+. .-+..+-|.|-.|.|||.+++.+.+.. .. ..+|+++-..++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHH
Confidence 46788999999999988866542 246677899999999999999999864 22 36899999999999999999
Q ss_pred HHHhC-CCCCCc------ccHHHHHHHHHHh--c--CCceEEEEecCCCC
Q 036619 263 IEGLG-KSASGL------NEFQSLMSRIQSS--I--KGKKNFLVLDDVWD 301 (352)
Q Consensus 263 ~~~l~-~~~~~~------~~~~~~~~~l~~~--l--~~kr~LlVlDdvw~ 301 (352)
+.... .+.++. ....+....+.++ . .++.++||||++..
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~ 126 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA 126 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh
Confidence 99985 222211 2233444444442 2 25689999999955
No 65
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=1.8e-05 Score=77.71 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=89.7
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+...+.|.+++.... -...+.++|+.|+||||+|+.+...-......+ ..+++.-...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHhh
Confidence 468999999999999886532 245578999999999999998886422111110 00111111111111
Q ss_pred HHhCC----------CCCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEE-ecCChH
Q 036619 264 EGLGK----------SASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILV-TTRNES 331 (352)
Q Consensus 264 ~~l~~----------~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~ 331 (352)
..-+. ...+.++..++...+... ..+++-++|+|++........+.|+..+......+.+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 10000 001112223333333221 135566899999988777788888888887655665554 555555
Q ss_pred HHHHhC-CCCeeeCCCCCCCc
Q 036619 332 VARMMG-STDIISIEQLAEEE 351 (352)
Q Consensus 332 va~~~~-~~~~~~l~~L~~~e 351 (352)
+-..+. -...|++.+++.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~ 181 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRT 181 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHH
Confidence 554432 35678888887653
No 66
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=2.8e-05 Score=72.38 Aligned_cols=162 Identities=15% Similarity=0.097 Sum_probs=92.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEE---EEeCCCCCHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIW---VCVSDTFDQIRIAK 260 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~w---v~vs~~~~~~~~~~ 260 (352)
..++|.+.....|.+.+.... -...+.++|+.|+||+|||..+...--.......... .........-...+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 568999999899988886543 2456889999999999999777664211111100000 00000000001122
Q ss_pred HHHHHhCCC-----C---C------CcccHHHHHHHHHHhc-----CCceEEEEecCCCCCCccChhHHHHhhccCCCCc
Q 036619 261 AIIEGLGKS-----A---S------GLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGS 321 (352)
Q Consensus 261 ~i~~~l~~~-----~---~------~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 321 (352)
.|...-... . . ..-..++ ++.+.+++ .+.+-++|||++...+....+.|...+.....++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 222111110 0 0 0011333 23333333 3556799999999888788888988888766667
Q ss_pred EEEEecCCh-HHHHHhCC-CCeeeCCCCCCCc
Q 036619 322 KILVTTRNE-SVARMMGS-TDIISIEQLAEEE 351 (352)
Q Consensus 322 ~IivTTR~~-~va~~~~~-~~~~~l~~L~~~e 351 (352)
.+|++|.+. .+...+.+ ...+++.+|+.++
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~ 204 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPED 204 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHH
Confidence 677777665 44433333 6688999998765
No 67
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.14 E-value=8.7e-06 Score=69.36 Aligned_cols=50 Identities=28% Similarity=0.365 Sum_probs=33.4
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+|+|.+.-+..+.-++..... ..+.+..+.+||++|+||||||..+.+.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc
Confidence 5799998888776544432110 1245788889999999999999999985
No 68
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.13 E-value=2.3e-05 Score=71.92 Aligned_cols=120 Identities=16% Similarity=0.139 Sum_probs=71.5
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+...+.+..++... ....++.++|++|+||||+|+.+++.. ... ...++.+. .... ..+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~~~-~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CRID-FVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-ccHH-HHHHHH
Confidence 46899999999999888642 235677789999999999999998742 211 23444443 2211 111111
Q ss_pred HHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCCh
Q 036619 264 EGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNE 330 (352)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (352)
..+.. .. -+.+.+-+||||++... ..+....+...+.....++++|+||...
T Consensus 89 ~~~~~-------------~~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 89 TRFAS-------------TV--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred HHHHH-------------hh--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 11100 00 01234568899999655 2223344555565555677888888653
No 69
>PRK09087 hypothetical protein; Validated
Probab=98.12 E-value=8.8e-06 Score=70.78 Aligned_cols=104 Identities=17% Similarity=0.288 Sum_probs=60.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
.+.+.|+|+.|+|||+|++.++.... ..+++.. .+...++. .+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~---------------------~~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN---------------------AAAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH---------------------hhhc-
Confidence 35689999999999999998886421 1133221 11111111 1111
Q ss_pred eEEEEecCCCCCCccChhHHHHhhcc-CCCCcEEEEecCC---------hHHHHHhCCCCeeeCCCCCCCc
Q 036619 291 KNFLVLDDVWDGDYNKWQPFFRCLKN-GLHGSKILVTTRN---------ESVARMMGSTDIISIEQLAEEE 351 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~IivTTR~---------~~va~~~~~~~~~~l~~L~~~e 351 (352)
-+|+|||+.... ..-..+...+.. ...|..||+|++. +++...+....+++++++++++
T Consensus 89 -~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 89 -GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDAL 157 (226)
T ss_pred -CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHH
Confidence 278899996431 111234444431 1236678988873 3455556667889999988653
No 70
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.12 E-value=1.3e-05 Score=63.24 Aligned_cols=96 Identities=22% Similarity=0.136 Sum_probs=52.1
Q ss_pred EEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCC-ceE
Q 036619 214 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKG-KKN 292 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~ 292 (352)
|.|+|++|+|||++|+.+.+.- ..+ .+.++.+.-.+. ........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~~---~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GFP---FIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TSE---EEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--ccc---cccccccccccc---------------cccccccccccccccccccccce
Confidence 5689999999999999999853 211 334443321100 0111122223333332223 489
Q ss_pred EEEecCCCCCCccC-----------hhHHHHhhccCCC---CcEEEEecCC
Q 036619 293 FLVLDDVWDGDYNK-----------WQPFFRCLKNGLH---GSKILVTTRN 329 (352)
Q Consensus 293 LlVlDdvw~~~~~~-----------~~~l~~~l~~~~~---gs~IivTTR~ 329 (352)
+|+|||+....... ...+...+..... +..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999996543222 3445555544322 3456666665
No 71
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=2.9e-05 Score=75.91 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=82.7
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+.-++.|.+++.... -...+.++|+.|+||||+|+.+...-..... +. ..++..-.....|.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~------~~-~~pcg~C~~C~~i~ 83 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETG------VT-ATPCGVCSACLEID 83 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCC------CC-CCCCCCCHHHHHHh
Confidence 468999999999988886533 2355679999999999999998764211110 00 00111001111111
Q ss_pred HHhC-----CCCCCcccHHHHH---HHHHH-hcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC-hHHH
Q 036619 264 EGLG-----KSASGLNEFQSLM---SRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVA 333 (352)
Q Consensus 264 ~~l~-----~~~~~~~~~~~~~---~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~va 333 (352)
..-. .........+++. ..+.. -..+++-++|+|++........+.|...+......+.+|++|.+ +.+.
T Consensus 84 ~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil 163 (527)
T PRK14969 84 SGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIP 163 (527)
T ss_pred cCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCc
Confidence 0000 0000011122222 21111 11356779999999877656678888888776556666665543 3333
Q ss_pred HHh-CCCCeeeCCCCCCC
Q 036619 334 RMM-GSTDIISIEQLAEE 350 (352)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~ 350 (352)
..+ +-...+++.+++.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~ 181 (527)
T PRK14969 164 VTVLSRCLQFNLKQMPPP 181 (527)
T ss_pred hhHHHHHHHHhcCCCCHH
Confidence 221 11345666666554
No 72
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=2e-05 Score=77.78 Aligned_cols=159 Identities=15% Similarity=0.209 Sum_probs=89.7
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCe--EEEEEeCCCCCHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK--VIWVCVSDTFDQIRIAKA 261 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~ 261 (352)
.+++|.+..++.|.+.+.... -...+.++|+.|+||||+|+.+.+.-........ ..+ ..+..-.-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 468999999999999886533 2456789999999999999999874221111100 000 01111111222
Q ss_pred HHHHhCCC--------CCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEE-ecCChH
Q 036619 262 IIEGLGKS--------ASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILV-TTRNES 331 (352)
Q Consensus 262 i~~~l~~~--------~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~ 331 (352)
|....... ..+..++.++...++.. ..+++-++|+|++........+.|...+..-...+++|+ ||....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 22211111 01111222233322211 234556899999977765667888888877666676655 445455
Q ss_pred HHHHhC-CCCeeeCCCCCCCc
Q 036619 332 VARMMG-STDIISIEQLAEEE 351 (352)
Q Consensus 332 va~~~~-~~~~~~l~~L~~~e 351 (352)
+...+. -...+++.+++.++
T Consensus 175 ll~tI~SRcq~~~f~~l~~~e 195 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADV 195 (598)
T ss_pred hhHHHHhheeEEEecCCCHHH
Confidence 544332 25578888877653
No 73
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=2.1e-05 Score=73.17 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=82.1
Q ss_pred CCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 036619 183 EGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 183 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 262 (352)
+..++||+.|++.+.+|+...-+. ...+.+-|.|-+|.|||.+...++.+......=-+++++++..-.....++..|
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~--~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLEL--NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhc--ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 467999999999999999765532 456788899999999999999999864322221255777777656777888888
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhcCC-c-eEEEEecCCCC
Q 036619 263 IEGLGKSASGLNEFQSLMSRIQSSIKG-K-KNFLVLDDVWD 301 (352)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~-k-r~LlVlDdvw~ 301 (352)
...+...........+....+...... + -+|+|+|.+..
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~ 267 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDH 267 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhH
Confidence 887733222222224555666666643 3 68999999854
No 74
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.09 E-value=2.7e-05 Score=67.31 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=68.4
Q ss_pred cCCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHH
Q 036619 182 DEGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKA 261 (352)
Q Consensus 182 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 261 (352)
.-..++|.+.+++.|++-...--.+ ....-+.+||..|.|||+|++.+.+...-+. .--|.++.
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G--~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k---------- 88 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQG--LPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK---------- 88 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcC--CCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH----------
Confidence 3457999999998887654322211 2345566899999999999999988532222 11122322
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC
Q 036619 262 IIEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG 317 (352)
Q Consensus 262 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~ 317 (352)
....++..+...|+. ...||+|++||+.-. +...+..|++.|..+
T Consensus 89 ---------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGg 134 (249)
T PF05673_consen 89 ---------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGG 134 (249)
T ss_pred ---------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCc
Confidence 112233444444442 467999999999654 334688888888643
No 75
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=3.1e-05 Score=71.70 Aligned_cols=160 Identities=16% Similarity=0.162 Sum_probs=93.4
Q ss_pred CCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhc--cCCeEEEEEeCCCCCHHHHHH
Q 036619 183 EGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR--NFEKVIWVCVSDTFDQIRIAK 260 (352)
Q Consensus 183 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~~~~ 260 (352)
...++|.++....|...+.... -...+.|+|+.|+||||||..+...--... .+... ....++..-...+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 3568999999999999886533 245688999999999999998876421110 01111 0111111112333
Q ss_pred HHHHHhCC-------CC-C------CcccHHHHHHHHHHhc-----CCceEEEEecCCCCCCccChhHHHHhhccCCCCc
Q 036619 261 AIIEGLGK-------SA-S------GLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGS 321 (352)
Q Consensus 261 ~i~~~l~~-------~~-~------~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 321 (352)
.|...-.. .. . ..-..+++ ..+.+++ .+++-++|+|++...+....+.|...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 33222110 00 0 01113332 2344443 3567799999999887777888888887655555
Q ss_pred EEEEec-CChHHHHHhCC-CCeeeCCCCCCCc
Q 036619 322 KILVTT-RNESVARMMGS-TDIISIEQLAEEE 351 (352)
Q Consensus 322 ~IivTT-R~~~va~~~~~-~~~~~l~~L~~~e 351 (352)
.+|++| +...+...+.+ ...+++.+++.++
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~ 204 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDE 204 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHH
Confidence 555544 44444433322 5689999998765
No 76
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=3.2e-05 Score=72.60 Aligned_cols=145 Identities=15% Similarity=0.266 Sum_probs=80.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhh------ccCCeEE-EEEeCCCCCHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK------RNFEKVI-WVCVSDTFDQI 256 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------~~F~~~~-wv~vs~~~~~~ 256 (352)
.+++|.+...+.+.+.+.... -...+.++|++|+||||+|+.+.+.-... ..|...+ -+......+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 457899999998888886532 24678899999999999999887642110 1121111 11111111111
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHH-hcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEec-CChHHHH
Q 036619 257 RIAKAIIEGLGKSASGLNEFQSLMSRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT-RNESVAR 334 (352)
Q Consensus 257 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~va~ 334 (352)
+..++...+.. -..+++-++++|++.......++.+...+......+.+|++| ....+..
T Consensus 92 ------------------~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 92 ------------------DIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred ------------------HHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 11111111111 113455689999997654445777777776544455555544 4434332
Q ss_pred H-hCCCCeeeCCCCCCCc
Q 036619 335 M-MGSTDIISIEQLAEEE 351 (352)
Q Consensus 335 ~-~~~~~~~~l~~L~~~e 351 (352)
. .+...++++.++++++
T Consensus 154 ~l~sr~~~v~~~~~~~~~ 171 (367)
T PRK14970 154 TILSRCQIFDFKRITIKD 171 (367)
T ss_pred HHHhcceeEecCCccHHH
Confidence 2 2334578888887654
No 77
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=1.9e-05 Score=78.43 Aligned_cols=156 Identities=14% Similarity=0.187 Sum_probs=86.8
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+.-++.|.+++.... -...+.++|+.|+||||+|+.+.+.-.....+ .-...++.-...+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHHh
Confidence 468999998888888886432 23566799999999999999998642111100 0001122223333333
Q ss_pred HHhCCC-----CCCcccHH---HHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecC-ChHHH
Q 036619 264 EGLGKS-----ASGLNEFQ---SLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTR-NESVA 333 (352)
Q Consensus 264 ~~l~~~-----~~~~~~~~---~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR-~~~va 333 (352)
...... .......+ ++...+... ..+++-++|||++.....+..+.|...+......+.+|++|. ...+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 322111 00111122 222222221 235567899999977665667788888876655666666553 33443
Q ss_pred HHh-CCCCeeeCCCCCCC
Q 036619 334 RMM-GSTDIISIEQLAEE 350 (352)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~ 350 (352)
..+ .-...+++.+++.+
T Consensus 165 ~tI~SR~~~i~f~~l~~~ 182 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVA 182 (585)
T ss_pred HHHHhccceeeCCCCCHH
Confidence 322 22456667666543
No 78
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=3.4e-05 Score=75.84 Aligned_cols=156 Identities=14% Similarity=0.238 Sum_probs=85.1
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+..+..|.+.+.... -...+.++|+.|+||||+|+.+.+.-....... ...++.-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHh
Confidence 457898877777777775432 246777899999999999998887422111000 00111111122221
Q ss_pred HHhCCC--------CCCcccHHHHHHHHHH-hcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEec-CChHHH
Q 036619 264 EGLGKS--------ASGLNEFQSLMSRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT-RNESVA 333 (352)
Q Consensus 264 ~~l~~~--------~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~va 333 (352)
...... .....+...+...+.. -..+++-+||||++.......++.|...+........+|++| ....+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 111000 0001111222222221 124566799999998776667788888886544455555545 445555
Q ss_pred HHh-CCCCeeeCCCCCCCc
Q 036619 334 RMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~e 351 (352)
..+ .-...|++.+++.++
T Consensus 164 ~TI~SRcq~i~F~pLs~~e 182 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAG 182 (624)
T ss_pred HHHHhhhhccccCCCCHHH
Confidence 333 224577888887654
No 79
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.05 E-value=2.4e-05 Score=67.93 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=59.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHH----HHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQ----SLMSRIQSS 286 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~l~~~ 286 (352)
+-.++|+|..|+|||||...+..+ ....|..+++++-.........+.. ..+.... ....++ .....+.+.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~~~n~~~~~~i~p--~~i~~~~-~~e~le~~l~~~k~~I~k~ 87 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITPEYNNEYYKYIWP--DHIFKVF-DKEELEYILIRQKEKIEKY 87 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEecCCchhhhhhcch--hhccccc-cHHHHHHHHHHHHHHHHHH
Confidence 346779999999999999888864 6778888877754333222211100 0111100 011111 112222232
Q ss_pred c----CCc---eEEEEecCCCCCCccChhHHHHhhccCCC-CcEEEEecCC
Q 036619 287 I----KGK---KNFLVLDDVWDGDYNKWQPFFRCLKNGLH-GSKILVTTRN 329 (352)
Q Consensus 287 l----~~k---r~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~IivTTR~ 329 (352)
. .+| +.||||||+.... ..-..+...+..+.+ +.-+|++++.
T Consensus 88 ~~k~~~~k~~~~~LiIlDD~~~~~-~k~~~l~~~~~~gRH~~is~i~l~Q~ 137 (241)
T PF04665_consen 88 IKKSPQKKNNPRFLIILDDLGDKK-LKSKILRQFFNNGRHYNISIIFLSQS 137 (241)
T ss_pred hhhhcccCCCCCeEEEEeCCCCch-hhhHHHHHHHhcccccceEEEEEeee
Confidence 2 233 8999999996521 111235555655432 3446666654
No 80
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.03 E-value=3.1e-05 Score=79.78 Aligned_cols=45 Identities=29% Similarity=0.315 Sum_probs=37.6
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++||+.++.++++.|.... ..-+.++|++|+||||||+.+.+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH
Confidence 468999999999999986643 234459999999999999999874
No 81
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.02 E-value=4.2e-05 Score=60.50 Aligned_cols=88 Identities=20% Similarity=0.165 Sum_probs=46.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK- 290 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 290 (352)
..+.|+|++|+||||+++.+.... .......+++..+........... .......... .........+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKAS-GSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH-hhhhhccCCC-CCHHHHHHHHHHHHHhcC
Confidence 578899999999999999998742 222223555554443322221111 0111111111 12222233444444433
Q ss_pred eEEEEecCCCCCC
Q 036619 291 KNFLVLDDVWDGD 303 (352)
Q Consensus 291 r~LlVlDdvw~~~ 303 (352)
..+|++|++....
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999997763
No 82
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.02 E-value=5.6e-05 Score=78.10 Aligned_cols=45 Identities=27% Similarity=0.284 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999997643 234469999999999999998875
No 83
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.01 E-value=0.00013 Score=59.98 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=78.1
Q ss_pred cccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhcc------------------CCeEEEEEe
Q 036619 188 GRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN------------------FEKVIWVCV 249 (352)
Q Consensus 188 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------F~~~~wv~v 249 (352)
|.++..+.|.+.+.... -...+.++|+.|+||+++|..+...--.... ..-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 34455566666664432 2456789999999999999887764211111 122223322
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhc-----CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEE
Q 036619 250 SDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKIL 324 (352)
Q Consensus 250 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii 324 (352)
.... ..-..+++. .+.+.+ .+++-++|||++...+.+.++.|+..+.....++.+|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2210 011233333 333332 3456689999999988888999999998888889888
Q ss_pred EecCChH-HHHHhCC-CCeeeCCCCC
Q 036619 325 VTTRNES-VARMMGS-TDIISIEQLA 348 (352)
Q Consensus 325 vTTR~~~-va~~~~~-~~~~~l~~L~ 348 (352)
++|.+.+ +-..+-+ ...+++.+||
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8887764 4444433 5677777764
No 84
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.00 E-value=4.7e-05 Score=65.92 Aligned_cols=147 Identities=16% Similarity=0.267 Sum_probs=76.9
Q ss_pred ccccccch-HHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 185 EVCGRVDE-KSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 185 ~~~gr~~~-~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.++|...+ .......+..... .....+-|+|..|+|||.|.+.+++...-...=..+++++ ...+...+.
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~ 80 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFA 80 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHH
Confidence 34564333 3344444443321 2344578999999999999999998532221222455553 345555555
Q ss_pred HHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCc-cChhH-HHHhhcc-CCCCcEEEEecCCh---------H
Q 036619 264 EGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDY-NKWQP-FFRCLKN-GLHGSKILVTTRNE---------S 331 (352)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-~~~~~-l~~~l~~-~~~gs~IivTTR~~---------~ 331 (352)
..+.. ... ..+++.+. .-=+|+|||++.-.. ..|.. +...+.. ...|-+||+|+... +
T Consensus 81 ~~~~~-----~~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~ 150 (219)
T PF00308_consen 81 DALRD-----GEI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPD 150 (219)
T ss_dssp HHHHT-----TSH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HH
T ss_pred HHHHc-----ccc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChh
Confidence 55443 111 22334444 334788999976422 22333 3333332 13466899999643 4
Q ss_pred HHHHhCCCCeeeCCCCCCC
Q 036619 332 VARMMGSTDIISIEQLAEE 350 (352)
Q Consensus 332 va~~~~~~~~~~l~~L~~~ 350 (352)
+...+...-++++.+++++
T Consensus 151 L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 151 LRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp HHHHHHCSEEEEE----HH
T ss_pred hhhhHhhcchhhcCCCCHH
Confidence 4455566777888887754
No 85
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=3.8e-05 Score=75.97 Aligned_cols=155 Identities=14% Similarity=0.238 Sum_probs=86.1
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+.....|.+.+.... -...+.++|+.|+||||+|+.+.+.-...+..+ ..+++.-.....|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999988888888886532 245678999999999999998876421111110 00111111111111
Q ss_pred HHhCC--------CCCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEE-ecCChHHH
Q 036619 264 EGLGK--------SASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILV-TTRNESVA 333 (352)
Q Consensus 264 ~~l~~--------~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~va 333 (352)
..-.. ...+..++.++...+... ..+++-++|||++........+.|...+......+.+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 10000 001111223333333221 134556899999987766678888888877655666655 55555555
Q ss_pred HHhC-CCCeeeCCCCCCC
Q 036619 334 RMMG-STDIISIEQLAEE 350 (352)
Q Consensus 334 ~~~~-~~~~~~l~~L~~~ 350 (352)
..+. -...+++.+++.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~ 181 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQ 181 (576)
T ss_pred HHHHHhhhhhhcCCCCHH
Confidence 4432 2456667776654
No 86
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.00 E-value=2e-05 Score=73.80 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=37.9
Q ss_pred CccccccchHHHHHHHHcCcccc-------CCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|.++.+++|.+.+...-.. +-..++-+.++|++|+|||+||+.+++.
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999998876422110 1123456889999999999999999984
No 87
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=6.6e-05 Score=74.60 Aligned_cols=144 Identities=15% Similarity=0.216 Sum_probs=87.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhh---------------------hccCC
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEV---------------------KRNFE 242 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---------------------~~~F~ 242 (352)
.+++|.+...+.|...+.... -...+.++|+.|+||||+|+.+...-.. ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468999999999999886532 2456889999999999999887763211 11232
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCc
Q 036619 243 KVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGS 321 (352)
Q Consensus 243 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 321 (352)
. ..+..+....+.. +.++...+... ..+++-++|+|++.......++.|...+..-..++
T Consensus 92 ~-~~ld~~~~~~vd~------------------Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 92 I-HELDAASNNSVDD------------------IRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred e-EEecccccCCHHH------------------HHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 1 1122221111111 11112111111 13456688999998876667888999888766666
Q ss_pred EEEE-ecCChHHHHHhC-CCCeeeCCCCCCCc
Q 036619 322 KILV-TTRNESVARMMG-STDIISIEQLAEEE 351 (352)
Q Consensus 322 ~Iiv-TTR~~~va~~~~-~~~~~~l~~L~~~e 351 (352)
.+|+ ||....+-..+. -..++++.++++++
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~e 184 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVAD 184 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHH
Confidence 6555 555555554433 35678888887654
No 88
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.98 E-value=3.8e-05 Score=78.39 Aligned_cols=45 Identities=29% Similarity=0.267 Sum_probs=37.4
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++||++++.+++..|.... ..-+.++|++|+|||++|+.+.+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999886543 234569999999999999999874
No 89
>CHL00181 cbbX CbbX; Provisional
Probab=97.98 E-value=0.00015 Score=65.38 Aligned_cols=124 Identities=12% Similarity=0.121 Sum_probs=64.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCce
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKK 291 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (352)
..+.++|++|+||||+|+.++........-....|+.++. .. +...+.+.. .......+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHHc---cC
Confidence 4577899999999999999987421111111223555552 12 222221111 11112222222 23
Q ss_pred EEEEecCCCCC---------CccChhHHHHhhccCCCCcEEEEecCChHHHHHhC--------CCCeeeCCCCCCCc
Q 036619 292 NFLVLDDVWDG---------DYNKWQPFFRCLKNGLHGSKILVTTRNESVARMMG--------STDIISIEQLAEEE 351 (352)
Q Consensus 292 ~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~--------~~~~~~l~~L~~~e 351 (352)
-+|+||++... ..+.-+.|...+.....+.+||+++..+.+..... ....+++.+++.+|
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 49999999642 11122334455555555667778876554432221 14467888877654
No 90
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=6.3e-05 Score=75.11 Aligned_cols=151 Identities=15% Similarity=0.253 Sum_probs=86.6
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..++|.+.....|.+.+.... -...+.++|+.|+||||+|+.+...--.....+ .+ .++ ......
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~----~pC---~~C~~~- 82 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LL----EPC---QECIEN- 82 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CC----Cch---hHHHHh-
Confidence 458899888888888886533 245667899999999999998876311111000 00 000 000000
Q ss_pred HHhCCC-------C---CCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEE-EecCChH
Q 036619 264 EGLGKS-------A---SGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKIL-VTTRNES 331 (352)
Q Consensus 264 ~~l~~~-------~---~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTTR~~~ 331 (352)
.+.. . .+..+..++...+... ..+++-++|+|++.......+..|...+......+.+| +||....
T Consensus 83 --~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 83 --VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred --hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 0000 0 0111223333333321 23566799999998776667888888887655555544 4555555
Q ss_pred HHHHh-CCCCeeeCCCCCCCc
Q 036619 332 VARMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 332 va~~~-~~~~~~~l~~L~~~e 351 (352)
+...+ .-...+++.+++.++
T Consensus 161 Ll~TI~SRcq~ieF~~L~~ee 181 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDE 181 (725)
T ss_pred hhHHHHhhceeEEccCCCHHH
Confidence 65433 335688898887654
No 91
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.95 E-value=6.8e-05 Score=67.63 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=64.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCceE
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKKN 292 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 292 (352)
-+.++|++|+|||++|+.+.....-........|+.++. .. ++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 467999999999999987775321111111223555442 12 222222111 11122222222 336
Q ss_pred EEEecCCCCC---------CccChhHHHHhhccCCCCcEEEEecCChHHHHHh--C------CCCeeeCCCCCCCc
Q 036619 293 FLVLDDVWDG---------DYNKWQPFFRCLKNGLHGSKILVTTRNESVARMM--G------STDIISIEQLAEEE 351 (352)
Q Consensus 293 LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~--~------~~~~~~l~~L~~~e 351 (352)
+|+||++... ..+.++.|...+.....+.+||+++..+...... . ....+++.+++.+|
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 8999999632 1122345566665555566777777654332221 1 13568888887654
No 92
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.91 E-value=7.7e-05 Score=66.50 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=32.7
Q ss_pred ccccccchHHHHHHH---HcC------ccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 185 EVCGRVDEKSELFSK---LLC------ESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~---L~~------~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++|.++.+++|.+. ..- ..-...+....+.++|++|+||||+|+.+++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 477877777665433 211 00001234566789999999999999999864
No 93
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00013 Score=70.63 Aligned_cols=145 Identities=16% Similarity=0.233 Sum_probs=83.7
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhc-------------------cCCeE
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKV 244 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~ 244 (352)
..++|.+.-...|.+.+.... -...+.++|+.|+||||+|+.+...-.... .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 458899999999988886533 245667899999999999998876311100 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEE
Q 036619 245 IWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKI 323 (352)
Q Consensus 245 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I 323 (352)
.++..+... +..+...+...+... ..+++-++|+|++........+.|...+....+...+
T Consensus 91 ~eidaas~~------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNR------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCC------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 111111111 111122232222221 2456779999999776555677788888765555555
Q ss_pred EEec-CChHHHHHh-CCCCeeeCCCCCCCc
Q 036619 324 LVTT-RNESVARMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 324 ivTT-R~~~va~~~-~~~~~~~l~~L~~~e 351 (352)
|++| +...+...+ .....+++.+++.++
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~e 182 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQ 182 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHH
Confidence 5544 444444332 224578888876543
No 94
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00013 Score=70.88 Aligned_cols=156 Identities=14% Similarity=0.172 Sum_probs=86.3
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+.....|...+.... -...+.++|+.|+||||+|+.+.+.--....-+. .++..-.....+.
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHh
Confidence 468998888888888885432 3456789999999999999987763111110000 0000000011111
Q ss_pred HHhCC-----CCCCcccHHHHHHHHHHh----cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh-HHH
Q 036619 264 EGLGK-----SASGLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVA 333 (352)
Q Consensus 264 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va 333 (352)
..... ........+++...+... ..+++-++|+|++.....+..+.|+..+......+++|++|.+. .+.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 10000 000001122333222221 12456689999998877677888888887766667766666543 333
Q ss_pred HHh-CCCCeeeCCCCCCCc
Q 036619 334 RMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~e 351 (352)
..+ +-...+++.+++.++
T Consensus 162 ~tI~SRc~~~~F~~Ls~~e 180 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNS 180 (535)
T ss_pred hHHHhhceeEEcCCCCHHH
Confidence 222 225678888887654
No 95
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.00011 Score=70.44 Aligned_cols=127 Identities=21% Similarity=0.277 Sum_probs=71.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
..-+.|+|..|+|||+|++.+.+.-.....-..+++++ ...++..+...+.... .....+.+.+. .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 34578999999999999999988422111112334443 3456666666654310 11223333333 2
Q ss_pred eEEEEecCCCCCCc-cCh-hHHHHhhcc-CCCCcEEEEecCCh---------HHHHHhCCCCeeeCCCCCCCc
Q 036619 291 KNFLVLDDVWDGDY-NKW-QPFFRCLKN-GLHGSKILVTTRNE---------SVARMMGSTDIISIEQLAEEE 351 (352)
Q Consensus 291 r~LlVlDdvw~~~~-~~~-~~l~~~l~~-~~~gs~IivTTR~~---------~va~~~~~~~~~~l~~L~~~e 351 (352)
.-+|||||+..... +.+ +.+...|.. ...|..||+|+... .+...+...-++.+++++.++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~ 279 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKT 279 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHH
Confidence 34889999965421 122 334444432 13355688887542 333344456677888887653
No 96
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=7.9e-05 Score=71.52 Aligned_cols=144 Identities=15% Similarity=0.251 Sum_probs=83.5
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhc---------------------cCC
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR---------------------NFE 242 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------------------~F~ 242 (352)
.+++|.+..+..|.+.+.... -...+.++|+.|+||||+|+.+.+.-.... +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999998888886432 246678999999999999988876421110 111
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCc
Q 036619 243 KVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGS 321 (352)
Q Consensus 243 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 321 (352)
..++....... ..+..++...+... ..+.+-++|+|++.....+..+.|...+......+
T Consensus 92 -~~~i~g~~~~g------------------id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRG------------------IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCC------------------HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 11111111111 11122222222111 13566789999997665456677888887655566
Q ss_pred EEEEec-CChHHHHHh-CCCCeeeCCCCCCCc
Q 036619 322 KILVTT-RNESVARMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 322 ~IivTT-R~~~va~~~-~~~~~~~l~~L~~~e 351 (352)
.+|++| +...+-..+ .....+++.++++++
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~e 184 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEET 184 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHH
Confidence 666655 333333322 225578888887654
No 97
>PRK06620 hypothetical protein; Validated
Probab=97.89 E-value=3.3e-05 Score=66.62 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=56.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCce
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKK 291 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (352)
..+.|+|++|+|||+|++.+++... . .++. ..+.. + +.++ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHHh-cC
Confidence 5688999999999999998876431 1 1111 00000 0 0111 23
Q ss_pred EEEEecCCCCCCccChhHHHHhhcc-CCCCcEEEEecCCh-------HHHHHhCCCCeeeCCCCCCCc
Q 036619 292 NFLVLDDVWDGDYNKWQPFFRCLKN-GLHGSKILVTTRNE-------SVARMMGSTDIISIEQLAEEE 351 (352)
Q Consensus 292 ~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~IivTTR~~-------~va~~~~~~~~~~l~~L~~~e 351 (352)
-+|++||+..-.. ..+...+.. ..+|..||+|++.+ ++...+...-+++++++++++
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~ 151 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDEL 151 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHH
Confidence 4788999953211 123333221 13467899998753 233344456688999888653
No 98
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.89 E-value=0.00022 Score=67.80 Aligned_cols=124 Identities=18% Similarity=0.256 Sum_probs=65.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
...+.|+|+.|+|||+|++.+++.......=..+++++. ..+...+...+... ..+.. .+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~----~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEF----KEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHH----HHHHHh-
Confidence 456789999999999999999985322211124555543 33444555544321 22222 223322
Q ss_pred eEEEEecCCCCCCcc-Ch-hHHHHhhccC-CCCcEEEEecCCh-H--------HHHHhCCCCeeeCCCCCCC
Q 036619 291 KNFLVLDDVWDGDYN-KW-QPFFRCLKNG-LHGSKILVTTRNE-S--------VARMMGSTDIISIEQLAEE 350 (352)
Q Consensus 291 r~LlVlDdvw~~~~~-~~-~~l~~~l~~~-~~gs~IivTTR~~-~--------va~~~~~~~~~~l~~L~~~ 350 (352)
.-+|||||+...... .+ ..+...+... ..|..+|+|+... . +...+....++++.+.+.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~ 271 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLE 271 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHH
Confidence 238999999753212 12 2344444321 2355677777542 2 1222222346777766543
No 99
>PRK10536 hypothetical protein; Provisional
Probab=97.88 E-value=0.00016 Score=63.29 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=74.2
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeC----C-----CCC
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS----D-----TFD 254 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~-----~~~ 254 (352)
..+.++......++.+|.+ ..++.+.|++|+|||+||..+..+.-..+.|+.++-..-. + +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 4567888888888888853 2388899999999999998887753223445444433211 1 011
Q ss_pred HH----HHHHHHHHHhCCCCCCcccHHHHHH--------HHHHhcCCceE---EEEecCCCCCCccChhHHHHhhccCCC
Q 036619 255 QI----RIAKAIIEGLGKSASGLNEFQSLMS--------RIQSSIKGKKN---FLVLDDVWDGDYNKWQPFFRCLKNGLH 319 (352)
Q Consensus 255 ~~----~~~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVlDdvw~~~~~~~~~l~~~l~~~~~ 319 (352)
.. -.+.-|...+..-. +....+.+.. .-..++++..+ +||+|...+.+. ..+...+...+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCC
Confidence 11 11111111111100 0001111100 00134566655 999999987643 555666666678
Q ss_pred CcEEEEecC
Q 036619 320 GSKILVTTR 328 (352)
Q Consensus 320 gs~IivTTR 328 (352)
+|+||+|--
T Consensus 203 ~sk~v~~GD 211 (262)
T PRK10536 203 NVTVIVNGD 211 (262)
T ss_pred CCEEEEeCC
Confidence 999998754
No 100
>PRK08181 transposase; Validated
Probab=97.88 E-value=8e-05 Score=66.28 Aligned_cols=100 Identities=21% Similarity=0.181 Sum_probs=56.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCce
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKK 291 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (352)
.-+.++|++|+|||.||..+.+.. ......+.|++ ...++..+..... ..+.... +..+ .+-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~---l~~l--~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTR------TTDLVQKLQVARR-----ELQLESA---IAKL--DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeee------HHHHHHHHHHHHh-----CCcHHHH---HHHH--hcC
Confidence 348899999999999999998742 22233445554 3445555543321 1112222 2222 133
Q ss_pred EEEEecCCCCCCccChh--HHHHhhccC-CCCcEEEEecCCh
Q 036619 292 NFLVLDDVWDGDYNKWQ--PFFRCLKNG-LHGSKILVTTRNE 330 (352)
Q Consensus 292 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~IivTTR~~ 330 (352)
=||||||+.......|. .+...+... ..++ +||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s-~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRS-ILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCC-EEEEcCCC
Confidence 49999999765333332 355555432 2344 88888764
No 101
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.00012 Score=69.98 Aligned_cols=122 Identities=20% Similarity=0.272 Sum_probs=67.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
..-+.|+|+.|+|||+|++.+.+.. ......+++++ ...+...+...+... . ...++..+. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 3557899999999999999999853 22223344554 234444555544321 1 122333333 3
Q ss_pred eEEEEecCCCCCCccCh--hHHHHhhcc-CCCCcEEEEecCCh---------HHHHHhCCCCeeeCCCCCCC
Q 036619 291 KNFLVLDDVWDGDYNKW--QPFFRCLKN-GLHGSKILVTTRNE---------SVARMMGSTDIISIEQLAEE 350 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~--~~l~~~l~~-~~~gs~IivTTR~~---------~va~~~~~~~~~~l~~L~~~ 350 (352)
.-+|+|||+.......| +.+...+.. ...|..||+||... .+...+....++.+.+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e 274 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKE 274 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHH
Confidence 44888999966422212 234443321 12355688887542 22223333567888888754
No 102
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.87 E-value=0.00042 Score=60.79 Aligned_cols=102 Identities=14% Similarity=0.181 Sum_probs=58.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
...+.++|.+|+|||+||..+.+.- ...-..+++++ ...++..+-..... ....... +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIIT------VADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEE------HHHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 3467899999999999999999853 22233455553 34455444443321 1111222 223344 3
Q ss_pred eEEEEecCCCCCCccChhH--HHHhhcc--CCCCcEEEEecCC
Q 036619 291 KNFLVLDDVWDGDYNKWQP--FFRCLKN--GLHGSKILVTTRN 329 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~~--l~~~l~~--~~~gs~IivTTR~ 329 (352)
.=||||||+.......|.. +...+.. ....+ +|+||-.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~-tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRP-TGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCC-EEEeCCC
Confidence 4488999998765566764 4444432 22344 6777754
No 103
>PRK08118 topology modulation protein; Reviewed
Probab=97.85 E-value=8.2e-06 Score=67.52 Aligned_cols=34 Identities=32% Similarity=0.614 Sum_probs=28.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhh-ccCCeEEE
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIW 246 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~w 246 (352)
.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999875544 46787775
No 104
>PRK12377 putative replication protein; Provisional
Probab=97.81 E-value=7e-05 Score=65.85 Aligned_cols=101 Identities=20% Similarity=0.156 Sum_probs=57.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
...+.++|.+|+|||+||..+.+. .......+.++++. .++..|-..... ..... .+.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~----~~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGE----KFLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHH----HHHHHh-cC
Confidence 356889999999999999999985 33333345666543 444444443321 11111 122222 35
Q ss_pred eEEEEecCCCCCCccChhH--HHHhhccC--CCCcEEEEecCC
Q 036619 291 KNFLVLDDVWDGDYNKWQP--FFRCLKNG--LHGSKILVTTRN 329 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~~--l~~~l~~~--~~gs~IivTTR~ 329 (352)
-=||||||+.......|.. |...+... ...+ +|+||-.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~p-tiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRS-VGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCC-EEEEcCC
Confidence 5699999996654445553 44444422 2234 6777753
No 105
>PRK06526 transposase; Provisional
Probab=97.81 E-value=7.7e-05 Score=65.96 Aligned_cols=100 Identities=18% Similarity=0.241 Sum_probs=54.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCce
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKK 291 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (352)
..+.|+|++|+|||+||..+.+.. ....+. +.|+ +...++..+...... . .+...+..+ .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a-~~~g~~-v~f~------t~~~l~~~l~~~~~~-----~---~~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA-CQAGHR-VLFA------TAAQWVARLAAAHHA-----G---RLQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH-HHCCCc-hhhh------hHHHHHHHHHHHHhc-----C---cHHHHHHHh--ccC
Confidence 457899999999999999998753 233332 2332 334454444432110 1 112223332 234
Q ss_pred EEEEecCCCCCCccChh--HHHHhhcc-CCCCcEEEEecCCh
Q 036619 292 NFLVLDDVWDGDYNKWQ--PFFRCLKN-GLHGSKILVTTRNE 330 (352)
Q Consensus 292 ~LlVlDdvw~~~~~~~~--~l~~~l~~-~~~gs~IivTTR~~ 330 (352)
-||||||+.......|. .+...+.. ..+++ +|+||..+
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 58999999754322332 34444432 23455 88888764
No 106
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00027 Score=70.34 Aligned_cols=157 Identities=13% Similarity=0.183 Sum_probs=86.0
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..++|.+.-...|..++.... -...+.++|+.|+||||+|+.+...-.....+.. ....+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHh
Confidence 468899888888888886533 2346779999999999999999875221111100 001112222233332
Q ss_pred HHhCCC-----CCCcccHHHHHHHHHHh----cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecC-ChHHH
Q 036619 264 EGLGKS-----ASGLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTR-NESVA 333 (352)
Q Consensus 264 ~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR-~~~va 333 (352)
...... .......+++.+.+... ..+++-++|||++.....+.++.|+..+......+.+|++|. ...+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 221110 00111222222222111 135566899999987766678888888876555555555444 33443
Q ss_pred HHhC-CCCeeeCCCCCCC
Q 036619 334 RMMG-STDIISIEQLAEE 350 (352)
Q Consensus 334 ~~~~-~~~~~~l~~L~~~ 350 (352)
..+. -...+++.+++.+
T Consensus 166 pTIrSRc~~~~f~~l~~~ 183 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLE 183 (620)
T ss_pred HHHHhheeEEEecCCCHH
Confidence 3332 2455666666543
No 107
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.74 E-value=0.00062 Score=69.64 Aligned_cols=50 Identities=26% Similarity=0.316 Sum_probs=39.0
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
...+|.++.+++|+++|............++.++|++|+||||+++.+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999888632211112346789999999999999999996
No 108
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.74 E-value=8.1e-05 Score=65.79 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=89.6
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEE-EEeCCCCCHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIW-VCVSDTFDQIRIAKAI 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i 262 (352)
.+++|.+..+.-|.+.+.. ....+...+|++|.|||+.|..+...---.+-|.+++- .|+|..-... +.
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vv--- 105 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VV--- 105 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-ch---
Confidence 4688999989999888876 23678889999999999999888864323345554432 3444432211 00
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhc--CCce-EEEEecCCCCCCccChhHHHHhhccCCCCcEE-EEecCChHHHHHhCC
Q 036619 263 IEGLGKSASGLNEFQSLMSRIQSSI--KGKK-NFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKI-LVTTRNESVARMMGS 338 (352)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I-ivTTR~~~va~~~~~ 338 (352)
.....+...+........ ..++ -.||||++..+..+.|..+...+.+-...++. +||+--..+...+.+
T Consensus 106 -------r~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 106 -------REKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred -------hhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 001111222111111111 1233 37899999998888999999999875555654 555544444433322
Q ss_pred -CCeeeCCCCCCC
Q 036619 339 -TDIISIEQLAEE 350 (352)
Q Consensus 339 -~~~~~l~~L~~~ 350 (352)
...|+..+|.++
T Consensus 179 RC~KfrFk~L~d~ 191 (346)
T KOG0989|consen 179 RCQKFRFKKLKDE 191 (346)
T ss_pred hHHHhcCCCcchH
Confidence 344666666654
No 109
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.0006 Score=66.94 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=67.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCce
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKK 291 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (352)
..+.|+|..|+|||.|++.+++.......--.+++++. ..++.++...+... .. ..+++.+.+ -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~----~~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KG----DSFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cH----HHHHHHhhc-C
Confidence 34889999999999999999985321111123455543 34444444443221 11 122333332 2
Q ss_pred EEEEecCCCCCCc-cChh-HHHHhhccC-CCCcEEEEecCCh---------HHHHHhCCCCeeeCCCCCCC
Q 036619 292 NFLVLDDVWDGDY-NKWQ-PFFRCLKNG-LHGSKILVTTRNE---------SVARMMGSTDIISIEQLAEE 350 (352)
Q Consensus 292 ~LlVlDdvw~~~~-~~~~-~l~~~l~~~-~~gs~IivTTR~~---------~va~~~~~~~~~~l~~L~~~ 350 (352)
=+|||||+..... +.|. .|...|... .+|..|||||... .+...+...-+++|.+.+.+
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~E 449 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELE 449 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHH
Confidence 4789999976422 2333 344444321 2355688888752 23344445667788777654
No 110
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00024 Score=65.54 Aligned_cols=154 Identities=11% Similarity=0.058 Sum_probs=83.9
Q ss_pred ccc-ccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHH
Q 036619 186 VCG-RVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIE 264 (352)
Q Consensus 186 ~~g-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 264 (352)
++| .+...+.|.+.+... .-.....++|+.|+||||+|+.+.+.--..+..... .++.-...+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhc
Confidence 556 555566666666432 235677899999999999998886542111101000 0000011111110
Q ss_pred HhCCC-----CC-CcccHHHHHHHHHHh----cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh-HHH
Q 036619 265 GLGKS-----AS-GLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVA 333 (352)
Q Consensus 265 ~l~~~-----~~-~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va 333 (352)
.-... .. ..-..+++.+.+... ..+.+-++|+|++...+.+..+.|...+.....++.+|++|.+. .+.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 00000 00 001123332222211 23556679999998877667888989888777777777777653 444
Q ss_pred HHhCC-CCeeeCCCCCCCc
Q 036619 334 RMMGS-TDIISIEQLAEEE 351 (352)
Q Consensus 334 ~~~~~-~~~~~l~~L~~~e 351 (352)
..+.+ ...+++.++++++
T Consensus 155 ~TIrSRc~~i~~~~~~~~~ 173 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPES 173 (329)
T ss_pred HHHHhhceeeeCCCCCHHH
Confidence 44433 6678888887654
No 111
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.73 E-value=0.00043 Score=66.78 Aligned_cols=122 Identities=18% Similarity=0.266 Sum_probs=66.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccC--CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (352)
..-+.|+|+.|+|||+|++.+.+. +...+ ..+++++.. .+...+...+... ..+ .+.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHHh
Confidence 455889999999999999999985 33332 234555443 3334444444321 122 2233333
Q ss_pred CceEEEEecCCCCCCccC-h-hHHHHhhcc-CCCCcEEEEecCCh--H-------HHHHhCCCCeeeCCCCCCC
Q 036619 289 GKKNFLVLDDVWDGDYNK-W-QPFFRCLKN-GLHGSKILVTTRNE--S-------VARMMGSTDIISIEQLAEE 350 (352)
Q Consensus 289 ~kr~LlVlDdvw~~~~~~-~-~~l~~~l~~-~~~gs~IivTTR~~--~-------va~~~~~~~~~~l~~L~~~ 350 (352)
+.-+|||||+....... + +.+...|.. ...|..||+||... . +...+....++++++.+.+
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~ 283 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLE 283 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHH
Confidence 23489999996532111 2 234443321 12345577777643 1 2223333557888877654
No 112
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.72 E-value=0.0002 Score=74.13 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=37.4
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++||+.++.++++.|.... ...+.++|++|+|||+||+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999997643 234558999999999999988874
No 113
>PRK06921 hypothetical protein; Provisional
Probab=97.72 E-value=0.00027 Score=62.99 Aligned_cols=100 Identities=22% Similarity=0.365 Sum_probs=55.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
...+.++|..|+|||+||..+.+.. .+.+-..+++++. ..++..+...+ +.....+.. + .+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l-~~~~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~-~-~~ 177 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL-MRKKGVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNR-M-KK 177 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-hhhcCceEEEEEH------HHHHHHHHHHH----------HHHHHHHHH-h-cC
Confidence 4568899999999999999999852 2221334566654 23333332221 111122222 2 23
Q ss_pred eEEEEecCCCC-----CCccChhH--HHHhhccC-CCCcEEEEecCC
Q 036619 291 KNFLVLDDVWD-----GDYNKWQP--FFRCLKNG-LHGSKILVTTRN 329 (352)
Q Consensus 291 r~LlVlDdvw~-----~~~~~~~~--l~~~l~~~-~~gs~IivTTR~ 329 (352)
-=||||||+.. .....|.. |...+... .++..+||||-.
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 45999999932 22234553 55544421 224457888764
No 114
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.00022 Score=68.34 Aligned_cols=124 Identities=16% Similarity=0.244 Sum_probs=67.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKG 289 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (352)
..-+.|+|.+|+|||+|++.+.+... +.+.. .++|++. ..++..+...+... ..+. +++.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHHh
Confidence 34588999999999999999998532 22233 4556653 34556666555321 1222 2233333
Q ss_pred ceEEEEecCCCCCC-ccCh-hHHHHhhcc-CCCCcEEEEecC-ChH-H-------HHHhCCCCeeeCCCCCCC
Q 036619 290 KKNFLVLDDVWDGD-YNKW-QPFFRCLKN-GLHGSKILVTTR-NES-V-------ARMMGSTDIISIEQLAEE 350 (352)
Q Consensus 290 kr~LlVlDdvw~~~-~~~~-~~l~~~l~~-~~~gs~IivTTR-~~~-v-------a~~~~~~~~~~l~~L~~~ 350 (352)
+.-+|+|||+.... ...+ ..+...+.. ...|..||+||. .+. + ...+....++++++.+.+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e 266 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHH
Confidence 45589999997531 1112 234333321 122456888874 332 1 112233456677776643
No 115
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.71 E-value=5.1e-05 Score=63.46 Aligned_cols=101 Identities=21% Similarity=0.421 Sum_probs=51.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
..-+.++|..|+|||.||..+.+.. +...+ .+.|+++ .+++..+-. ... ....+.. +.. +. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~------~~L~~~l~~----~~~-~~~~~~~---~~~-l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITA------SDLLDELKQ----SRS-DGSYEEL---LKR-LK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHHHHHC----CHC-CTTHCHH---HHH-HH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeec------Cceeccccc----ccc-ccchhhh---cCc-cc-c
Confidence 3568899999999999999998752 33333 3555643 344444432 111 1112222 222 22 2
Q ss_pred eEEEEecCCCCCCccChhH--HHHhhccC-CCCcEEEEecCCh
Q 036619 291 KNFLVLDDVWDGDYNKWQP--FFRCLKNG-LHGSKILVTTRNE 330 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~IivTTR~~ 330 (352)
-=||||||+.......|.. +...+... .++ .+|+||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 3478899997754344432 33333321 234 477787654
No 116
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.71 E-value=0.00023 Score=73.89 Aligned_cols=137 Identities=15% Similarity=0.264 Sum_probs=79.8
Q ss_pred CccccccchHHHHHHHHcCccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAK 260 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 260 (352)
..++|.+..++.+...+..... .......++.++|+.|+|||+||+.+... ....-...+.++++.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 4689999999999888865321 01123567889999999999999999873 211122334444444222111
Q ss_pred HHHHHhCCCCC--CcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC-----------CCcEEEEec
Q 036619 261 AIIEGLGKSAS--GLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTT 327 (352)
Q Consensus 261 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTT 327 (352)
+..-++..+. +-.....+...++. ....+|+||++...+.+.++.|...|..+. ..+-||+||
T Consensus 640 -~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 640 -VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred -HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 1111222111 11111223333322 223499999998887788888888886541 234477777
Q ss_pred CC
Q 036619 328 RN 329 (352)
Q Consensus 328 R~ 329 (352)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 65
No 117
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.71 E-value=0.00023 Score=72.27 Aligned_cols=45 Identities=27% Similarity=0.245 Sum_probs=36.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++||++++.++++.|.... ..-+.++|++|+|||+||+.+...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999887643 123358999999999999999874
No 118
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00045 Score=68.18 Aligned_cols=155 Identities=15% Similarity=0.223 Sum_probs=85.5
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+.....|.+++.... -...+.++|+.|+||||+|+.+...-.....- ...+++.-.....|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHh
Confidence 468999999999999887543 24567789999999999999887531111100 011111112222222
Q ss_pred HHhCCC-----C---CCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEE-ecCChHHH
Q 036619 264 EGLGKS-----A---SGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILV-TTRNESVA 333 (352)
Q Consensus 264 ~~l~~~-----~---~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~va 333 (352)
...... . .+..++.++...+... ..++.-++|+|++.......++.|...+........+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 111110 0 0111122233322221 245667889999987665678888888776544554444 44444444
Q ss_pred HHh-CCCCeeeCCCCCCC
Q 036619 334 RMM-GSTDIISIEQLAEE 350 (352)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~ 350 (352)
..+ +....+.+.+++.+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ 181 (559)
T PRK05563 164 ATILSRCQRFDFKRISVE 181 (559)
T ss_pred HHHHhHheEEecCCCCHH
Confidence 333 22456777776654
No 119
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.70 E-value=0.00023 Score=67.27 Aligned_cols=113 Identities=18% Similarity=0.285 Sum_probs=70.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCceE
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKKN 292 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 292 (352)
++.|.|+.++|||||++.+... ..+. .++++..+......-+.+. ...+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCCc
Confidence 9999999999999999666543 1111 5555544322111111111 1111111122788
Q ss_pred EEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHH-----HHh-CCCCeeeCCCCCCC
Q 036619 293 FLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVA-----RMM-GSTDIISIEQLAEE 350 (352)
Q Consensus 293 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va-----~~~-~~~~~~~l~~L~~~ 350 (352)
+|+||.|... ..|......+.+..+. +|++|+-+..+- ... |-...+++-||+..
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 9999999776 7799988888876655 899988876433 322 33667888888754
No 120
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.70 E-value=0.00016 Score=74.64 Aligned_cols=136 Identities=20% Similarity=0.292 Sum_probs=78.4
Q ss_pred CccccccchHHHHHHHHcCccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAK 260 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 260 (352)
..++|.+..++.+.+.+..... .......++.++|+.|+|||.||+.+... .-......+-++++..... .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----h
Confidence 5689999999999888753211 11244678999999999999999888763 2111122222232221110 1
Q ss_pred HHHHHhCCCCCC---cccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC-----------CCcEEEEe
Q 036619 261 AIIEGLGKSASG---LNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVT 326 (352)
Q Consensus 261 ~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivT 326 (352)
.+ ..+.+.+++ ......+...+++ ...-+|+||++...+.+.++.|...+..+. ..+-||+|
T Consensus 640 ~~-~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 TV-SRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hh-ccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 11 112222211 1111223333332 345699999998777778888888877652 34657777
Q ss_pred cCC
Q 036619 327 TRN 329 (352)
Q Consensus 327 TR~ 329 (352)
|-.
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 653
No 121
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.70 E-value=0.00011 Score=69.37 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=37.7
Q ss_pred CccccccchHHHHHHHHcCccc-------cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESS-------EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|+++.++++.+.+..+-. -+-..++-+.++|++|+|||+||+.+++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 4688999999998876632110 01133566889999999999999999984
No 122
>PRK09183 transposase/IS protein; Provisional
Probab=97.69 E-value=0.00032 Score=62.38 Aligned_cols=101 Identities=20% Similarity=0.303 Sum_probs=54.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCce
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKK 291 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (352)
..+.|+|++|+|||+||..+.+.. ....+ .+.+++ ...++..+...... . .+...++..+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a-~~~G~-~v~~~~------~~~l~~~l~~a~~~-----~---~~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA-VRAGI-KVRFTT------AADLLLQLSTAQRQ-----G---RYKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH-HHcCC-eEEEEe------HHHHHHHHHHHHHC-----C---cHHHHHHHHh-cCC
Confidence 457799999999999999997642 22222 233443 23343333222111 0 1122232322 344
Q ss_pred EEEEecCCCCCCccChh--HHHHhhcc-CCCCcEEEEecCCh
Q 036619 292 NFLVLDDVWDGDYNKWQ--PFFRCLKN-GLHGSKILVTTRNE 330 (352)
Q Consensus 292 ~LlVlDdvw~~~~~~~~--~l~~~l~~-~~~gs~IivTTR~~ 330 (352)
-++||||++......+. .+...+.. -.+++ +|+||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 59999999764333333 35555532 13466 88888653
No 123
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.68 E-value=0.00027 Score=73.18 Aligned_cols=138 Identities=13% Similarity=0.256 Sum_probs=76.8
Q ss_pred CccccccchHHHHHHHHcCccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAK 260 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 260 (352)
..++|.+..++.+...+..... .......++.++|+.|+|||+||+.+.+. ....-...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----
Confidence 4688999888888887753221 01123467889999999999999999863 211112234444443211 1
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhcCCc-eEEEEecCCCCCCccChhHHHHhhccCC-----------CCcEEEEecC
Q 036619 261 AIIEGLGKSASGLNEFQSLMSRIQSSIKGK-KNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTR 328 (352)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTTR 328 (352)
.....+.+.+++-...+. ...+.+.++.+ .-+|+||++...+...+..|...+..+. ..+-||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 111222222221111100 11122222222 3599999998777778888888886541 2233777876
Q ss_pred C
Q 036619 329 N 329 (352)
Q Consensus 329 ~ 329 (352)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 124
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00048 Score=67.82 Aligned_cols=155 Identities=11% Similarity=0.081 Sum_probs=86.2
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
.+++|.+.-+..|.+++.... -...+.++|+.|+||||+|+.+.+.--....... ..+....+ .+.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~----C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSS----CKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchH----HHHHH
Confidence 468999998999999886533 3456889999999999999998874211111000 00000001 11111
Q ss_pred HHhCC-----CCCCcccHHHHH---HHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEec-CChHHH
Q 036619 264 EGLGK-----SASGLNEFQSLM---SRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT-RNESVA 333 (352)
Q Consensus 264 ~~l~~-----~~~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~va 333 (352)
..-.. ........+++. ..+... ..+++-++|+|++.......++.|...+......+.+|++| ....+-
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 11000 000011122222 222221 24566689999998776667888888887665666666555 434444
Q ss_pred HHh-CCCCeeeCCCCCCC
Q 036619 334 RMM-GSTDIISIEQLAEE 350 (352)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~ 350 (352)
..+ .-...+++.+++.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~ 181 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLE 181 (563)
T ss_pred HHHHHhceEEEecCCCHH
Confidence 333 22456788877654
No 125
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.67 E-value=0.0002 Score=74.25 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=36.8
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++||+.++.+++..|.... ...+.++|++|+|||+||+.+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999996543 233458999999999999988874
No 126
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.67 E-value=0.00027 Score=72.22 Aligned_cols=121 Identities=14% Similarity=0.247 Sum_probs=72.0
Q ss_pred CccccccchHHHHHHHHcCccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAK 260 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 260 (352)
..++|.+..++.+.+.+..... .......++.++|+.|+|||+||+.+... . +...+.++.+.-....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcc----
Confidence 4678888888888877753211 01133567899999999999999999873 2 2334555554422211
Q ss_pred HHHHHhCCCCC--CcccHHHHHHHHHHhcCCc-eEEEEecCCCCCCccChhHHHHhhccC
Q 036619 261 AIIEGLGKSAS--GLNEFQSLMSRIQSSIKGK-KNFLVLDDVWDGDYNKWQPFFRCLKNG 317 (352)
Q Consensus 261 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~~~~l~~~l~~~ 317 (352)
.+...++.... +......+ .+.++.+ .-+|+||++...+.+.++.|...+..+
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l----~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLL----TEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred cHHHHhcCCCCCcccchhhHH----HHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 11222222111 11122223 3333333 359999999888777888888887654
No 127
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.67 E-value=0.00034 Score=63.59 Aligned_cols=101 Identities=15% Similarity=0.260 Sum_probs=61.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
..-+.|+|..|+|||.||..+++.. .+..+ .+.+++++ .++..+...+... +.. ..+.. + .+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l-~~~g~-~v~~~~~~------~l~~~lk~~~~~~-----~~~---~~l~~-l-~~ 217 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANEL-AKKGV-SSTLLHFP------EFIRELKNSISDG-----SVK---EKIDA-V-KE 217 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHcCC-CEEEEEHH------HHHHHHHHHHhcC-----cHH---HHHHH-h-cC
Confidence 4568899999999999999999863 23333 34556543 4555555544321 112 22222 2 24
Q ss_pred eEEEEecCCCCCCccChhH--HHHhh-ccC-CCCcEEEEecCC
Q 036619 291 KNFLVLDDVWDGDYNKWQP--FFRCL-KNG-LHGSKILVTTRN 329 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~~--l~~~l-~~~-~~gs~IivTTR~ 329 (352)
-=||||||+.......|.. +...+ ... ..+-..|+||-.
T Consensus 218 ~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 218 APVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 5589999998776667864 44444 322 234457888864
No 128
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.67 E-value=0.00039 Score=59.47 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=72.4
Q ss_pred CCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 036619 183 EGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 183 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 262 (352)
-..++|.+..++.|++-...--.+ ..-.-+.+||..|+|||+|++.+.+. +....-. -|.|+..
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G--~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~---------- 122 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEG--LPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE---------- 122 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcC--CcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH----------
Confidence 356899999888887654332211 23345679999999999999999984 3333322 2222221
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC---CCCcEEEEecCC
Q 036619 263 IEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG---LHGSKILVTTRN 329 (352)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~---~~gs~IivTTR~ 329 (352)
+..++..+...|+. ...||+|..||+.-+ +...++.+++.+..+ .+.-.++..|.+
T Consensus 123 ---------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 ---------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ---------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 01112222222222 478999999999654 345788899888754 333334444444
No 129
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.64 E-value=0.00036 Score=72.12 Aligned_cols=47 Identities=26% Similarity=0.334 Sum_probs=40.0
Q ss_pred ccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 185 EVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++||+.+.+.|...+..... ..-.++.+.|..|||||+|++.|..-
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~ 47 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKP 47 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHH
Confidence 378999999999999876553 34569999999999999999999973
No 130
>PRK07261 topology modulation protein; Provisional
Probab=97.64 E-value=0.00015 Score=60.24 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=34.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhh-ccCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSDTFDQIRIAKAIIEGL 266 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l 266 (352)
.|.|+|++|+||||||+.+.....+. -+.|...|-......+...+...+...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHH
Confidence 47899999999999999988653222 2456677754333444444444444333
No 131
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.00058 Score=62.38 Aligned_cols=162 Identities=17% Similarity=0.215 Sum_probs=90.2
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhh-------------ccCCeEEEEEeC
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK-------------RNFEKVIWVCVS 250 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------~~F~~~~wv~vs 250 (352)
..++|.+..++.+...+.... -.....++|+.|+||+++|..+.+.--.. ..+.-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 358899998888888886533 24788899999999999997776531111 112222344211
Q ss_pred CCCCHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHHhc-----CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEE
Q 036619 251 DTFDQIRIAKAIIEGLG--KSASGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKI 323 (352)
Q Consensus 251 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I 323 (352)
...+-..+-..-++..+ ......-..+++ +.+.+.+ .+.+-++|+|++...+....+.|+..+....+..-|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 00000000001111111 000111112222 2333333 456779999999888777888899988765544334
Q ss_pred EEecCChHHHHHhCC-CCeeeCCCCCCCc
Q 036619 324 LVTTRNESVARMMGS-TDIISIEQLAEEE 351 (352)
Q Consensus 324 ivTTR~~~va~~~~~-~~~~~l~~L~~~e 351 (352)
++|+..+.+-..+.+ ...+++.++++++
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~ 186 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQ 186 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHH
Confidence 444444455444433 6788888888754
No 132
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.62 E-value=0.00041 Score=58.93 Aligned_cols=131 Identities=21% Similarity=0.246 Sum_probs=63.8
Q ss_pred cccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCC---------CHH--
Q 036619 188 GRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF---------DQI-- 256 (352)
Q Consensus 188 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~---------~~~-- 256 (352)
.+..+....++.|.. ..++.+.|++|.|||.||-...-+.-....|+.++++.-.-+. +..
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 455666777777762 3588899999999999997777654445788888877422110 000
Q ss_pred --HHHHHHHHHhCCCCCCcccHHHHHHH------HHHhcCCce---EEEEecCCCCCCccChhHHHHhhccCCCCcEEEE
Q 036619 257 --RIAKAIIEGLGKSASGLNEFQSLMSR------IQSSIKGKK---NFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILV 325 (352)
Q Consensus 257 --~~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~kr---~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv 325 (352)
-.+.-+...+..-. .....+.+... -..+++++. .+||+|++.+.. -..++..+...+.|||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t---~~~~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLT---PEELKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG-----HHHHHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCC---HHHHHHHHcccCCCcEEEE
Confidence 00111111111110 11112222110 012345543 499999997764 3456666777778999999
Q ss_pred ecCCh
Q 036619 326 TTRNE 330 (352)
Q Consensus 326 TTR~~ 330 (352)
+=-..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 75443
No 133
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.61 E-value=0.002 Score=66.28 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=37.8
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.++.++++.+++......+.....++.++|++|+|||++|+.+.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999888764321111123457899999999999999999974
No 134
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.0006 Score=62.63 Aligned_cols=142 Identities=15% Similarity=0.181 Sum_probs=82.5
Q ss_pred ccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhc-------------------cCCeEE
Q 036619 185 EVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKVI 245 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 245 (352)
.++|-+....++..+..... .....+.+.|++|+||||+|..+.+.-.... .+.-..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35667777788888887433 2233588999999999999988887522111 112333
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcE
Q 036619 246 WVCVSDTFD---QIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSK 322 (352)
Q Consensus 246 wv~vs~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 322 (352)
.++.+.... ..+..+++.+....... .++.-++++|++.....+.-+.+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 344333333 12222222222211100 35677999999987766566677777776666778
Q ss_pred EEEecCC-hHHHHHhCC-CCeeeCCC
Q 036619 323 ILVTTRN-ESVARMMGS-TDIISIEQ 346 (352)
Q Consensus 323 IivTTR~-~~va~~~~~-~~~~~l~~ 346 (352)
+|++|.. ..+...+.+ ...+++.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 8887763 344433332 34455544
No 135
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.60 E-value=0.00029 Score=63.83 Aligned_cols=131 Identities=25% Similarity=0.274 Sum_probs=72.4
Q ss_pred ccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHH-hhhhhhccCCeEEE----EEeCCCCC-------
Q 036619 187 CGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAY-NNDEVKRNFEKVIW----VCVSDTFD------- 254 (352)
Q Consensus 187 ~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~-~~~~~~~~F~~~~w----v~vs~~~~------- 254 (352)
-+|..+..--+++|++++ ...+++.|.+|.|||-||-... .....+..|..++- +.+.+...
T Consensus 227 ~prn~eQ~~ALdlLld~d------I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLDDD------IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcCCC------CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 346666666788888754 8899999999999999994432 22223444543332 12222211
Q ss_pred --HHHHHHHHH---HHhCCCCCCcccHHHHHHHH---------HHhcCCce---EEEEecCCCCCCccChhHHHHhhccC
Q 036619 255 --QIRIAKAII---EGLGKSASGLNEFQSLMSRI---------QSSIKGKK---NFLVLDDVWDGDYNKWQPFFRCLKNG 317 (352)
Q Consensus 255 --~~~~~~~i~---~~l~~~~~~~~~~~~~~~~l---------~~~l~~kr---~LlVlDdvw~~~~~~~~~l~~~l~~~ 317 (352)
+.-=++.|. +.+....... ...+...+ ..+++++. -+||+|.+.+- .-..++..+...
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~--~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL---TpheikTiltR~ 375 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPG--DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL---TPHELKTILTRA 375 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccc--hHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc---CHHHHHHHHHhc
Confidence 111112222 2222211111 11111111 12234443 49999999774 345677778788
Q ss_pred CCCcEEEEecC
Q 036619 318 LHGSKILVTTR 328 (352)
Q Consensus 318 ~~gs~IivTTR 328 (352)
+.||||++|--
T Consensus 376 G~GsKIVl~gd 386 (436)
T COG1875 376 GEGSKIVLTGD 386 (436)
T ss_pred cCCCEEEEcCC
Confidence 89999999864
No 136
>PRK04296 thymidine kinase; Provisional
Probab=97.60 E-value=0.00024 Score=60.10 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=61.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHHhcCC
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASG--LNEFQSLMSRIQSSIKG 289 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 289 (352)
.++.|+|+.|.||||++..+.... ..+-..++.+. ..++.......++.+++..... .....++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~--~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY--EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH--HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 467889999999999997777643 22333334342 1122222233455555432221 2234455555555 333
Q ss_pred ceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC
Q 036619 290 KKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN 329 (352)
Q Consensus 290 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (352)
+.-+||+|.+..-+.+....+...+. ..|..||+|.++
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~ 115 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLD 115 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecC
Confidence 44599999995532222233333332 347889999998
No 137
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.00056 Score=62.85 Aligned_cols=63 Identities=11% Similarity=0.174 Sum_probs=45.1
Q ss_pred CceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh-HHHHHhCC-CCeeeCCCCCCCc
Q 036619 289 GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVARMMGS-TDIISIEQLAEEE 351 (352)
Q Consensus 289 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va~~~~~-~~~~~l~~L~~~e 351 (352)
+++-++|||++...+.+..+.|...+..-..++.+|+||.+. .+...+.+ ...+++.++++++
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~ 169 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEE 169 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHH
Confidence 445566789999988888899999888766677777777665 44434333 5678888887654
No 138
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00066 Score=66.64 Aligned_cols=106 Identities=17% Similarity=0.271 Sum_probs=64.0
Q ss_pred CCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 036619 183 EGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 183 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 262 (352)
+.+.+|-++.+++|+++|.-..-...-+-.++++||++|+|||+|++.+.. .....|-. +.+..--|..+|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHh----
Confidence 457899999999999998533222224458999999999999999999997 34555522 222222222221
Q ss_pred HHHhCCC-CCCccc-HHHHHHHHHHhcCCceEEEEecCCCCC
Q 036619 263 IEGLGKS-ASGLNE-FQSLMSRIQSSIKGKKNFLVLDDVWDG 302 (352)
Q Consensus 263 ~~~l~~~-~~~~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~ 302 (352)
.+. .+-... ...+.+.+++. +.+.=|++||.+...
T Consensus 393 ----RGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm 429 (782)
T COG0466 393 ----RGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKM 429 (782)
T ss_pred ----ccccccccccCChHHHHHHHHh-CCcCCeEEeechhhc
Confidence 111 000000 12333333333 566779999999654
No 139
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.55 E-value=0.0004 Score=71.84 Aligned_cols=136 Identities=14% Similarity=0.259 Sum_probs=78.1
Q ss_pred CccccccchHHHHHHHHcCccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAK 260 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 260 (352)
..++|.+..+..+...+..... .......++.++|+.|+|||+||+.+.+. .-..-...+-+..+...+...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhcccccc---
Confidence 5688999888888887753211 11233567789999999999999988863 111112233344443222111
Q ss_pred HHHHHhCCCC--CCcccHHHHHHHHHHhcCCce-EEEEecCCCCCCccChhHHHHhhccC-----------CCCcEEEEe
Q 036619 261 AIIEGLGKSA--SGLNEFQSLMSRIQSSIKGKK-NFLVLDDVWDGDYNKWQPFFRCLKNG-----------LHGSKILVT 326 (352)
Q Consensus 261 ~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivT 326 (352)
+...++..+ .+-..... |.+.+..++ -+|+||++...+.+.++.|...|..+ ...+-||+|
T Consensus 584 -~~~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 584 -VSKLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred -HHHhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 111122211 11111222 334444444 58999999888777888888888764 234556667
Q ss_pred cCC
Q 036619 327 TRN 329 (352)
Q Consensus 327 TR~ 329 (352)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 654
No 140
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.54 E-value=0.00049 Score=59.12 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=55.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHh-C---CC-----CCCcccHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGL-G---KS-----ASGLNEFQSL 279 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l-~---~~-----~~~~~~~~~~ 279 (352)
+.-.++.|+|++|+|||+|+.++... .......++|+.... ++...+.+. .+.. . .. .....+....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHH
Confidence 45689999999999999999877754 223356889999876 666655443 2221 0 00 1111222334
Q ss_pred HHHHHHhcCC-ceEEEEecCCC
Q 036619 280 MSRIQSSIKG-KKNFLVLDDVW 300 (352)
Q Consensus 280 ~~~l~~~l~~-kr~LlVlDdvw 300 (352)
...+.+.+.. +.-+||+|.+-
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 5555555543 45699999984
No 141
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.53 E-value=0.0007 Score=56.45 Aligned_cols=37 Identities=38% Similarity=0.607 Sum_probs=28.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEE
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV 247 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv 247 (352)
....+|.+.|+.|+||||+|+.++.. ...++...+++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 34579999999999999999999974 44455555555
No 142
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.50 E-value=0.00081 Score=62.12 Aligned_cols=102 Identities=14% Similarity=0.070 Sum_probs=63.7
Q ss_pred hHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCe-EEEEEeCCC-CCHHHHHHHHHHHhCCC
Q 036619 192 EKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK-VIWVCVSDT-FDQIRIAKAIIEGLGKS 269 (352)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~ 269 (352)
-..++++.+..-. . -..+.|+|.+|+|||||++.+.+.. ..++-+. ++|+.+.+. ..+.++++.+...+...
T Consensus 119 ~~~RvID~l~PiG----k-GQR~LIvG~pGtGKTTLl~~la~~i-~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG----K-GQRGLIVAPPRAGKTVLLQQIAAAV-AANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC----C-CceEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 4455788776533 1 2455899999999999999988742 2223344 467676664 46778888887766553
Q ss_pred CCCcccH-----HHHHHHHHHhc--CCceEEEEecCC
Q 036619 270 ASGLNEF-----QSLMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 270 ~~~~~~~-----~~~~~~l~~~l--~~kr~LlVlDdv 299 (352)
..+.... -.....+.+++ ++++.+||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 3211111 11122222222 689999999998
No 143
>PRK13695 putative NTPase; Provisional
Probab=97.50 E-value=9.8e-05 Score=61.55 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=24.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEE
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV 247 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv 247 (352)
.+.|+|.+|+|||||++.+++.... ..|...-|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 4789999999999999998875322 235444444
No 144
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.50 E-value=9.4e-05 Score=67.89 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=42.4
Q ss_pred ccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 185 EVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+++|.++.++++++++.....+.....+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999997655322345689999999999999999999875
No 145
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.0018 Score=60.27 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|+++|++|+||||++..+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4589999999999999999888764
No 146
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.00044 Score=61.24 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=49.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
..-+.++|.+|+|||.||..+.+.-. +..+ .+.++++ .+++.++...... . .....|...+ .+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~----~----~~~~~l~~~l-~~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDE----G----RLEEKLLREL-KK 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhc----C----chHHHHHHHh-hc
Confidence 45688999999999999999998633 3333 4455543 4555555554432 0 1112222211 22
Q ss_pred eEEEEecCCCCCCccChh
Q 036619 291 KNFLVLDDVWDGDYNKWQ 308 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~ 308 (352)
-=||||||+.......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 348999999886556665
No 147
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.49 E-value=0.00072 Score=62.06 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=55.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCce
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKK 291 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (352)
.-+.++|..|+|||.||..+.+.. +... ..++++++. .++..+...-.. ...+... .+ +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l-~~~g-~~V~y~t~~------~l~~~l~~~~~~---~~~~~~~---~~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL-LDRG-KSVIYRTAD------ELIEILREIRFN---NDKELEE---VY-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH-HHCC-CeEEEEEHH------HHHHHHHHHHhc---cchhHHH---HH-HHhc-cC
Confidence 568899999999999999999853 2333 345666543 333333221110 0111111 12 2222 22
Q ss_pred EEEEecCCCCCCccChh--HHHHhhccC-CCCcEEEEecCC
Q 036619 292 NFLVLDDVWDGDYNKWQ--PFFRCLKNG-LHGSKILVTTRN 329 (352)
Q Consensus 292 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~IivTTR~ 329 (352)
=||||||+.......|. .+...+... .++-.+||||-.
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 48999999766444443 345544422 234458888864
No 148
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.48 E-value=5.6e-05 Score=60.43 Aligned_cols=90 Identities=22% Similarity=0.209 Sum_probs=50.3
Q ss_pred EEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCceEE
Q 036619 214 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKKNF 293 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~L 293 (352)
|.|+|++|+|||+||+.++... . ....-+.++...+..+++...--. ... .... ...+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~-~~~~-~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--G---RPVIRINCSSDTTEEDLIGSYDPS-NGQ-FEFK-DGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--T---CEEEEEE-TTTSTHHHHHCEEET--TTT-TCEE-E-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--h---cceEEEEeccccccccceeeeeec-ccc-cccc-cccccccc-----cceeE
Confidence 5689999999999999999742 1 123446777777777665322111 000 0000 00000000 17899
Q ss_pred EEecCCCCCCccChhHHHHhhcc
Q 036619 294 LVLDDVWDGDYNKWQPFFRCLKN 316 (352)
Q Consensus 294 lVlDdvw~~~~~~~~~l~~~l~~ 316 (352)
+|||++...+.+.+..|...+..
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~~ 91 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLEE 91 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHSS
T ss_pred EEECCcccCCHHHHHHHHHHHhh
Confidence 99999976555556666666643
No 149
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.48 E-value=0.00092 Score=58.13 Aligned_cols=88 Identities=20% Similarity=0.218 Sum_probs=54.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHH----h----CCC-CCCcccHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEG----L----GKS-ASGLNEFQSL 279 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~----l----~~~-~~~~~~~~~~ 279 (352)
+.-.++.|+|.+|+|||+|+.++.... ...-..++|+... .++...+. ++... + ... .....+..+.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 446899999999999999998887642 2334678899887 56655543 23322 1 000 1111122333
Q ss_pred HHHHHHhcCCceEEEEecCCC
Q 036619 280 MSRIQSSIKGKKNFLVLDDVW 300 (352)
Q Consensus 280 ~~~l~~~l~~kr~LlVlDdvw 300 (352)
...+...+..+--++|+|.+-
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 444555555667799999983
No 150
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.46 E-value=0.0012 Score=57.71 Aligned_cols=91 Identities=18% Similarity=0.277 Sum_probs=57.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhcc----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------C
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS------------G 272 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------~ 272 (352)
+.-.++.|+|.+|+|||+|+.+++-....... ...++|++....++..++. ++++..+.... .
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 45689999999999999999888643222221 3679999988887765544 33343332211 1
Q ss_pred cccHHHHHHHHHHhc-CC-ceEEEEecCCC
Q 036619 273 LNEFQSLMSRIQSSI-KG-KKNFLVLDDVW 300 (352)
Q Consensus 273 ~~~~~~~~~~l~~~l-~~-kr~LlVlDdvw 300 (352)
..+...+...+...+ +. +--|||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 122333445555555 33 66799999985
No 151
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.45 E-value=0.00037 Score=53.03 Aligned_cols=21 Identities=43% Similarity=0.543 Sum_probs=18.5
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (352)
|-|+|.+|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999998874
No 152
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.0029 Score=59.19 Aligned_cols=148 Identities=19% Similarity=0.237 Sum_probs=81.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..++|-......-...-.....+ .....+-|+|..|.|||.|++.+.+. ...+......++++. +.....++
T Consensus 88 nFv~g~~N~~A~aa~~~va~~~g--~~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~s----e~f~~~~v 159 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAENPG--GAYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLTS----EDFTNDFV 159 (408)
T ss_pred heeeCCchHHHHHHHHHHHhccC--CcCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEeccH----HHHHHHHH
Confidence 44566555443333322222211 24677889999999999999999994 444444333333332 33333444
Q ss_pred HHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCC-ccChh-HHHHhhccC-CCCcEEEEecCC---------hH
Q 036619 264 EGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD-YNKWQ-PFFRCLKNG-LHGSKILVTTRN---------ES 331 (352)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-~~~~~-~l~~~l~~~-~~gs~IivTTR~---------~~ 331 (352)
..+.. .-...+++.. .-=++++||++.-. .+.|+ .+...|..- ..|-.||+|++. +.
T Consensus 160 ~a~~~---------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~r 228 (408)
T COG0593 160 KALRD---------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDR 228 (408)
T ss_pred HHHHh---------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHH
Confidence 33322 1133444444 33488999997631 12233 244444321 224479999964 34
Q ss_pred HHHHhCCCCeeeCCCCCCC
Q 036619 332 VARMMGSTDIISIEQLAEE 350 (352)
Q Consensus 332 va~~~~~~~~~~l~~L~~~ 350 (352)
+...+...-++++.+++++
T Consensus 229 L~SR~~~Gl~~~I~~Pd~e 247 (408)
T COG0593 229 LRSRLEWGLVVEIEPPDDE 247 (408)
T ss_pred HHHHHhceeEEeeCCCCHH
Confidence 5555666778888888765
No 153
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.44 E-value=0.00034 Score=69.43 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=39.4
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+++|.+..+.++..+|...... .....++.|+|++|+||||+++.+...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999888654321 123467999999999999999999874
No 154
>PHA00729 NTP-binding motif containing protein
Probab=97.42 E-value=0.0018 Score=55.80 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|.|.+|+||||||..+.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999998874
No 155
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.41 E-value=0.0015 Score=56.79 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=56.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccC------CeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------Cc
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF------EKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---------GL 273 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~ 273 (352)
+.-.++.|+|.+|+|||+|+..+.... .... ..++|+.....++...+. .+......... ..
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 456899999999999999998876532 1222 567899988877766554 33333222100 11
Q ss_pred ccHHHHHHHHHHhcC----CceEEEEecCCCC
Q 036619 274 NEFQSLMSRIQSSIK----GKKNFLVLDDVWD 301 (352)
Q Consensus 274 ~~~~~~~~~l~~~l~----~kr~LlVlDdvw~ 301 (352)
.+.+++...+.+.+. .+--|||+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 344555555555442 3455999999843
No 156
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0026 Score=62.56 Aligned_cols=107 Identities=18% Similarity=0.257 Sum_probs=64.8
Q ss_pred CCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 036619 183 EGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 183 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 262 (352)
+.+.+|.++-++++++++--..-.++.+-++++.+|++|+|||.+|+.+..- ....| +-+++..-.|+.+|-..-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhhcccc
Confidence 4578999999999999985433333456799999999999999999999973 33343 223444444444331100
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCC
Q 036619 263 IEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWD 301 (352)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 301 (352)
--.+ +.. ...+++-|+.. +...=|+.||.|..
T Consensus 485 RTYV-----GAM-PGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 485 RTYV-----GAM-PGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred eeee-----ccC-ChHHHHHHHhh-CCCCceEEeehhhh
Confidence 0000 000 12233333332 45566888998854
No 157
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.40 E-value=0.00097 Score=59.17 Aligned_cols=89 Identities=25% Similarity=0.380 Sum_probs=56.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhc----cCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------Cc
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS------------GL 273 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------~~ 273 (352)
.-.+.=|+|.+|+|||+|+-.++-...+.. .=..++||+....|+..++. +|++....... ..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 356888999999999999977764433222 22479999999999988875 56665543211 11
Q ss_pred ccHHHHHHHHHHhc-CCceEEEEecCC
Q 036619 274 NEFQSLMSRIQSSI-KGKKNFLVLDDV 299 (352)
Q Consensus 274 ~~~~~~~~~l~~~l-~~kr~LlVlDdv 299 (352)
.+...+...+...+ +++--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 22333344444444 345569999998
No 158
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.37 E-value=0.0012 Score=60.34 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=58.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhh----ccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------Cccc
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---------GLNE 275 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~ 275 (352)
+.-+++-|+|++|+|||+|+..++-..... ..=..++||+....|+.+++. ++++.++.... ...+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCC
Confidence 456889999999999999997665332221 112478999999999988875 45666654321 1112
Q ss_pred HHH---HHHHHHHhcC-CceEEEEecCCC
Q 036619 276 FQS---LMSRIQSSIK-GKKNFLVLDDVW 300 (352)
Q Consensus 276 ~~~---~~~~l~~~l~-~kr~LlVlDdvw 300 (352)
.+. +...+...+. .+--|||+|.+-
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 333 2334444443 345589999984
No 159
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00082 Score=68.36 Aligned_cols=123 Identities=14% Similarity=0.222 Sum_probs=70.3
Q ss_pred CccccccchHHHHHHHHcCccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAK 260 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 260 (352)
..++|.++.++.|.+.+..... ........+.++|++|+|||+||+.+.... . ...+.++++......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhcccc----
Confidence 3578888888888887753211 112345678999999999999999997642 2 223344444322111
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhcC-CceEEEEecCCCCCCccChhHHHHhhccC
Q 036619 261 AIIEGLGKSASGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWDGDYNKWQPFFRCLKNG 317 (352)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~~~~~~~~l~~~l~~~ 317 (352)
.+.+-++. +++-...+ ....+.+.+. ....+|+||++.....+.++.|...|..+
T Consensus 529 ~~~~LiG~-~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 529 TVSRLIGA-PPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred cHHHHcCC-CCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 11122222 21110000 0112223332 23469999999888777888888877643
No 160
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0005 Score=68.96 Aligned_cols=122 Identities=16% Similarity=0.300 Sum_probs=76.7
Q ss_pred CccccccchHHHHHHHHcCccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccC---CeEEEEEeCCCCCHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSDTFDQIR 257 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~ 257 (352)
..++|.+..+..+.+.+..... +......+...+|+.|+|||-||+.+... -| +..+-+ |+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~------DMSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRI------DMSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceee------chHH
Confidence 5689999988888877753322 12355788999999999999999988863 23 233333 3333
Q ss_pred HHHH-HHHHhCCCCCCcccHHHHHHHHHHhcCCceE-EEEecCCCCCCccChhHHHHhhccC
Q 036619 258 IAKA-IIEGLGKSASGLNEFQSLMSRIQSSIKGKKN-FLVLDDVWDGDYNKWQPFFRCLKNG 317 (352)
Q Consensus 258 ~~~~-i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~ 317 (352)
.... -...|-+.+++--..++ -..|-+.++.++| +|.||.+...+++..+.|...|.+|
T Consensus 560 y~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 3322 12233333332111111 2334455567777 8999999887778888888888765
No 161
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.36 E-value=0.0017 Score=52.79 Aligned_cols=40 Identities=33% Similarity=0.360 Sum_probs=30.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCC
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFD 254 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 254 (352)
++.|+|.+|+||||++..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36799999999999999988743 22345778887766544
No 162
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.35 E-value=0.0013 Score=58.73 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=58.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH------------HHhCCCCC-CcccHHHH
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII------------EGLGKSAS-GLNEFQSL 279 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~------------~~l~~~~~-~~~~~~~~ 279 (352)
-+.|.|++|+|||+||+.+... .. .....++++...+...++.... ........ ......
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~--lg---~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK--RD---RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV-- 95 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH--hC---CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec--
Confidence 4558999999999999999862 22 1244566666555554432210 00000000 000000
Q ss_pred HHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccC----------------CCCcEEEEecCCh
Q 036619 280 MSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG----------------LHGSKILVTTRNE 330 (352)
Q Consensus 280 ~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~----------------~~gs~IivTTR~~ 330 (352)
...+.... .+...|+||++...+.+.+..|...+..+ .++.+||+|+-..
T Consensus 96 ~g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 96 DNRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred CchHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 00111111 13468999999876666677777766432 1255788887643
No 163
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.32 E-value=0.0018 Score=54.11 Aligned_cols=118 Identities=16% Similarity=0.112 Sum_probs=61.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhC---CC------------CCCccc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLG---KS------------ASGLNE 275 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~---~~------------~~~~~~ 275 (352)
-.+++|+|..|.|||||++.+..-.. .-...+++.-. +.......+...++ .. ....+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 35899999999999999999986421 11222222111 11111001111110 00 011111
Q ss_pred HHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHH
Q 036619 276 FQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVAR 334 (352)
Q Consensus 276 ~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 334 (352)
-+...-.|...+-.++-+++||+.-.. |....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 222223344555667778899988553 32334445555543334677999998887665
No 164
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.32 E-value=0.0002 Score=55.60 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+|.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 165
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0025 Score=59.84 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...++.++|++|+||||++.++...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999888764
No 166
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.29 E-value=0.0043 Score=51.43 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCceEEEEecCCC-CCCcc-ChhHHHHhhccCCCCcEEEEecCChHHHHHhCC
Q 036619 276 FQSLMSRIQSSIKGKKNFLVLDDVW-DGDYN-KWQPFFRCLKNGLHGSKILVTTRNESVARMMGS 338 (352)
Q Consensus 276 ~~~~~~~l~~~l~~kr~LlVlDdvw-~~~~~-~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~ 338 (352)
-++-.-.|...+-++.-+|+-|.-- +-|++ .|+.+.-+-.-+..|..||++|.+.++-..+..
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccC
Confidence 3444455666777888888888642 22323 455443333456779999999999998877643
No 167
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.28 E-value=0.00084 Score=57.20 Aligned_cols=111 Identities=14% Similarity=0.237 Sum_probs=59.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHH-HHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQI-RIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
.++.|+|+.|+||||++..+... ...+....++. +.++.... .-...++.+. .. ..+.......++..|...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~---~v-g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQR---EV-GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeec---cc-CCCccCHHHHHHHHhcCC
Confidence 47889999999999999887763 33333333332 22221100 0000011110 00 111223455677777666
Q ss_pred eEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHHH
Q 036619 291 KNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVAR 334 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 334 (352)
.=+|++|.+.+. +....+.... ..|..|+.|+...+++.
T Consensus 75 pd~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 779999999543 3333333332 34666888888766554
No 168
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.28 E-value=0.0013 Score=56.90 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=51.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHh----CCC--CCCcccH---HHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGL----GKS--ASGLNEF---QSL 279 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l----~~~--~~~~~~~---~~~ 279 (352)
..-.++.|.|.+|+|||||+.++.... ...-..++|+.....+. .-+.+++... ... .....+. ...
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRA 92 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence 446899999999999999998887642 22334677887665554 2333333321 100 0011222 223
Q ss_pred HHHHHHhcCCceEEEEecCCC
Q 036619 280 MSRIQSSIKGKKNFLVLDDVW 300 (352)
Q Consensus 280 ~~~l~~~l~~kr~LlVlDdvw 300 (352)
...+...+..+.-+||+|.+-
T Consensus 93 ~~~~~~~~~~~~~lvvIDsi~ 113 (218)
T cd01394 93 IQETETFADEKVDLVVVDSAT 113 (218)
T ss_pred HHHHHHHHhcCCcEEEEechH
Confidence 344555555456699999984
No 169
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.24 E-value=0.002 Score=54.70 Aligned_cols=55 Identities=31% Similarity=0.326 Sum_probs=33.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCC-CCHHHHHHHHHHHhC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FDQIRIAKAIIEGLG 267 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~ 267 (352)
++|+.+||+.|+||||.+-++......+ -..+..++.... ....+-++...+.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhc
Confidence 4799999999999999997777654333 334566665332 223344444455444
No 170
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.23 E-value=0.0026 Score=58.64 Aligned_cols=91 Identities=21% Similarity=0.245 Sum_probs=58.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhh---c-cCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------Cccc
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVK---R-NFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---------GLNE 275 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~ 275 (352)
+.-++.-|+|.+|+|||+|+..++-..... . .-..++||.....|+..++.+ +++.++.... ...+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCC
Confidence 446888899999999999997775432221 1 124789999999999888754 5666654321 1123
Q ss_pred HHHH---HHHHHHhcC-CceEEEEecCCC
Q 036619 276 FQSL---MSRIQSSIK-GKKNFLVLDDVW 300 (352)
Q Consensus 276 ~~~~---~~~l~~~l~-~kr~LlVlDdvw 300 (352)
.+.+ ...+...+. .+--|||+|.+-
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 3332 333333343 344589999984
No 171
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.23 E-value=0.0048 Score=51.62 Aligned_cols=121 Identities=15% Similarity=0.193 Sum_probs=66.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEE---eCCCCCHHHH------HHHHHHHhCCCC------CCccc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC---VSDTFDQIRI------AKAIIEGLGKSA------SGLNE 275 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~------~~~i~~~l~~~~------~~~~~ 275 (352)
-.+++|+|..|.|||||.+.++... ......+++. +. ..+.... ..++++.++... ...+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4689999999999999999998742 2233333332 22 1122221 112344443321 11222
Q ss_pred HHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC-CC-CcEEEEecCChHHHHH
Q 036619 276 FQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LH-GSKILVTTRNESVARM 335 (352)
Q Consensus 276 ~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~-gs~IivTTR~~~va~~ 335 (352)
-+.-.-.+...+-..+-++++|+.-.. |......+...+... .. |..||++|.+.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 222233345556667788889987442 333455555555432 22 6678889888765543
No 172
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.23 E-value=0.0024 Score=57.58 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=46.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-DQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (352)
...++.|+|++|+||||++..+......+..-..+..|+..... .....+....+.++.......+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 46799999999999999998887653333111245555544311 122233333333333322223344444444433 3
Q ss_pred CceEEEEecCC
Q 036619 289 GKKNFLVLDDV 299 (352)
Q Consensus 289 ~kr~LlVlDdv 299 (352)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 346777753
No 173
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.21 E-value=0.0023 Score=53.37 Aligned_cols=122 Identities=17% Similarity=0.271 Sum_probs=64.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhh-hh--hc---cCC--eEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------Cccc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNND-EV--KR---NFE--KVIWVCVSDTFDQIRIAKAIIEGLGKSAS-------GLNE 275 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~-~~--~~---~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------~~~~ 275 (352)
-.+++|+|+.|+|||||.+.+..+. .+ .. .|. .+.| +.+ .+.++.++.... ..+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~--~~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF--IDQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEE--EhH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4689999999999999999886321 11 10 111 1222 222 345555553211 1111
Q ss_pred HHHHHHHHHHhcCCc--eEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChHHHHHhCCCCeeeC
Q 036619 276 FQSLMSRIQSSIKGK--KNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNESVARMMGSTDIISI 344 (352)
Q Consensus 276 ~~~~~~~l~~~l~~k--r~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~va~~~~~~~~~~l 344 (352)
-+...-.+...+-.+ .-+++||..-.. +......+...+... ..|..||++|.+.+.... +..++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 222223344444445 667788987442 333344455555432 246679999998877643 3444444
No 174
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.20 E-value=0.0056 Score=52.71 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCceEEEEecCC-CCCCccChhHHHHhhccC--CCCcEEEEecCChHHHHHh
Q 036619 277 QSLMSRIQSSIKGKKNFLVLDDV-WDGDYNKWQPFFRCLKNG--LHGSKILVTTRNESVARMM 336 (352)
Q Consensus 277 ~~~~~~l~~~l~~kr~LlVlDdv-w~~~~~~~~~l~~~l~~~--~~gs~IivTTR~~~va~~~ 336 (352)
++-.-.+.+.|-..+-+|+.|.- .+-|.+.-+.+...|... ..|..||+.|.++.+|..+
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 44344566677777778888864 222333444555555532 3477899999999999864
No 175
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.20 E-value=0.0016 Score=59.33 Aligned_cols=85 Identities=22% Similarity=0.277 Sum_probs=55.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCcccHHHHHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSA-----SGLNEFQSLMSRI 283 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 283 (352)
+.-+++-|+|++|+||||||.+++.. ....-..++||.....++.. .++.++... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45678899999999999999877653 22334578899887776653 234443321 1122355556666
Q ss_pred HHhcC-CceEEEEecCCC
Q 036619 284 QSSIK-GKKNFLVLDDVW 300 (352)
Q Consensus 284 ~~~l~-~kr~LlVlDdvw 300 (352)
...++ +.--|||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55554 455699999974
No 176
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.20 E-value=0.0044 Score=51.15 Aligned_cols=125 Identities=13% Similarity=0.142 Sum_probs=65.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhh-cc--CC---eEEEEEeCCCCCH--HHHHHHHHHHhCCCCCCcccHHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVK-RN--FE---KVIWVCVSDTFDQ--IRIAKAIIEGLGKSASGLNEFQSLMSR 282 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~--F~---~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~ 282 (352)
-.+++|+|..|.|||||++.+..-.... .. |+ .+.+ +.+.... ..+...+.-. .....+.-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 4589999999999999999998742211 10 11 1222 2333211 1333333211 11222222333334
Q ss_pred HHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHHhCCCCeeeC
Q 036619 283 IQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARMMGSTDIISI 344 (352)
Q Consensus 283 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~~l 344 (352)
+...+-.++=+++||+--.. |......+...+... +..||++|.+...... +.+++.+
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 44555566677888886442 333444555555543 4568888888776542 3344443
No 177
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.0028 Score=52.60 Aligned_cols=128 Identities=20% Similarity=0.205 Sum_probs=65.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC--CCCHHHHHHHHHHHhCCCCC--C-------cccHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFDQIRIAKAIIEGLGKSAS--G-------LNEFQSL 279 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~--~-------~~~~~~~ 279 (352)
-.+++|+|+.|.|||||.+.++.-. ......+++.-.. ....... ...+..+..... . .+.-+.-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL-RKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH-HhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 4689999999999999999998742 2222333332110 0011111 000000000000 0 1111222
Q ss_pred HHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHHhCCCCeeeC
Q 036619 280 MSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARMMGSTDIISI 344 (352)
Q Consensus 280 ~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~~l 344 (352)
.-.|...+-.+.-+++||+--.. |......+...+.....+..||++|.+.+.... +.+++.+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 22344555667779999997543 323344555555433335678899988877654 3444443
No 178
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.19 E-value=0.0013 Score=56.76 Aligned_cols=121 Identities=11% Similarity=0.162 Sum_probs=60.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CcccHHHHHHHHHHh-
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---GLNEFQSLMSRIQSS- 286 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~- 286 (352)
.+++.|+|+.|.|||||.+.+...... .+-.+..|. .. .. ...+.++...+..... ..+....-...+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a--~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPA--DS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEc--CC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 478889999999999999988743211 111122221 11 00 0112222222222211 111111111222222
Q ss_pred -cCCceEEEEecCCCCCCc-cChhH----HHHhhccC-CCCcEEEEecCChHHHHHh
Q 036619 287 -IKGKKNFLVLDDVWDGDY-NKWQP----FFRCLKNG-LHGSKILVTTRNESVARMM 336 (352)
Q Consensus 287 -l~~kr~LlVlDdvw~~~~-~~~~~----l~~~l~~~-~~gs~IivTTR~~~va~~~ 336 (352)
+..++-|++||..-.... .+... +...+... ..+..+|+||.+.+++...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 246789999999866421 12112 22223222 2345799999999888765
No 179
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.17 E-value=0.0014 Score=64.50 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=60.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (352)
+.-+++.++|++|+||||||..+..+.. | .++=|++|+.-+...+-..|...+.....-.. .
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------d 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA-------------D 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------C
Confidence 4568999999999999999999997532 2 36678888887777776666665543221100 2
Q ss_pred CceEEEEecCCCCCCccChhHHHHhhc
Q 036619 289 GKKNFLVLDDVWDGDYNKWQPFFRCLK 315 (352)
Q Consensus 289 ~kr~LlVlDdvw~~~~~~~~~l~~~l~ 315 (352)
++...||+|.+.-......+.|.+.+.
T Consensus 386 srP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCcceEEEecccCCcHHHHHHHHHHHH
Confidence 577789999996653223455555554
No 180
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.0043 Score=56.76 Aligned_cols=147 Identities=8% Similarity=0.046 Sum_probs=82.2
Q ss_pred HHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC---
Q 036619 193 KSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS--- 269 (352)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~--- 269 (352)
.+.|.+.+.... -...+.+.|+.|+||+++|+.+...--..+... ...++.-...+.+...-.+.
T Consensus 11 ~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 11 YQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred HHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEE
Confidence 345555554322 246777999999999999988876422211110 00111111111111111000
Q ss_pred --C--CCcccHHHHH---HHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh-HHHHHhCC-C
Q 036619 270 --A--SGLNEFQSLM---SRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVARMMGS-T 339 (352)
Q Consensus 270 --~--~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va~~~~~-~ 339 (352)
+ ...-..+++. +.+... ..+++-++|+|++...+....+.|+..+..-..++.+|++|.+. .+...+-+ .
T Consensus 79 i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 79 LEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred EccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 0 0011233322 222221 24666788999999988788999999998877778777777654 55544433 5
Q ss_pred CeeeCCCCCCCc
Q 036619 340 DIISIEQLAEEE 351 (352)
Q Consensus 340 ~~~~l~~L~~~e 351 (352)
..+++.++++++
T Consensus 159 ~~~~~~~~~~~~ 170 (325)
T PRK06871 159 QTWLIHPPEEQQ 170 (325)
T ss_pred eEEeCCCCCHHH
Confidence 678888887654
No 181
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.17 E-value=0.0046 Score=50.37 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=64.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC---CCCHHHHHHHHHHHh-----CCC----CCC-ccc---
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD---TFDQIRIAKAIIEGL-----GKS----ASG-LNE--- 275 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l-----~~~----~~~-~~~--- 275 (352)
..|-|++..|.||||+|--..-. .....+ .+.++-.-+ ......+++.+- .+ +.. ... ..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r-a~~~g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR-ALGHGY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHCCC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 46778888899999999666543 122233 344433322 233333333330 00 000 000 011
Q ss_pred HHHHHHHHHHhcCCceE-EEEecCCCCC---CccChhHHHHhhccCCCCcEEEEecCChH
Q 036619 276 FQSLMSRIQSSIKGKKN-FLVLDDVWDG---DYNKWQPFFRCLKNGLHGSKILVTTRNES 331 (352)
Q Consensus 276 ~~~~~~~l~~~l~~kr~-LlVlDdvw~~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 331 (352)
........++.+....| |||||++-.. ..-..+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12233444555555444 9999998432 22456778888877777778999999853
No 182
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.16 E-value=0.0042 Score=56.86 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=56.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhc----cCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------Cccc
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---------GLNE 275 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~ 275 (352)
+.-.++-|+|.+|+|||||+..++....... .-..++|+.....++..++ .++.+.++.... ...+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~ 172 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYN 172 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCC
Confidence 4578999999999999999988775322211 1236799998888887764 445555543321 1122
Q ss_pred HHH---HHHHHHHhcC-CceEEEEecCCC
Q 036619 276 FQS---LMSRIQSSIK-GKKNFLVLDDVW 300 (352)
Q Consensus 276 ~~~---~~~~l~~~l~-~kr~LlVlDdvw 300 (352)
.++ +...+...+. .+--|||+|.+-
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 173 TDHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred hHHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 333 3333334343 455699999984
No 183
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.15 E-value=0.0034 Score=57.92 Aligned_cols=91 Identities=15% Similarity=0.171 Sum_probs=58.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhc----cCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------Cccc
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---------GLNE 275 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~ 275 (352)
..-.++-|+|.+|+|||+|+..++-...... .-..++||+....|+.+++. +|++.++.... ...+
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~ 199 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYN 199 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCC
Confidence 4468888999999999999977764322211 12379999999999988764 55666654321 1123
Q ss_pred HHHHH---HHHHHhc-CCceEEEEecCCC
Q 036619 276 FQSLM---SRIQSSI-KGKKNFLVLDDVW 300 (352)
Q Consensus 276 ~~~~~---~~l~~~l-~~kr~LlVlDdvw 300 (352)
.+.+. ..+...+ ..+--|||+|.+-
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 33333 3333333 3455699999984
No 184
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.15 E-value=0.00081 Score=63.44 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=36.2
Q ss_pred CccccccchHHHHHHHHcC----ccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLC----ESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|.+..+++|.+.+.. ++- -+-..++-+.++|++|+|||+||+.+.+.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4678888888877765531 110 01123567889999999999999999984
No 185
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.0004 Score=60.91 Aligned_cols=50 Identities=30% Similarity=0.396 Sum_probs=39.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+|+|.++-+++|.-++..... ....+-.+.++|++|.||||||..+.+.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 4699998888887666643322 3466889999999999999999999985
No 186
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.14 E-value=0.0035 Score=55.65 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=53.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccC-CeEEEEEeCCCCC-HHHHHHHHHHHhCCC-------CCCcccH-----
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFD-QIRIAKAIIEGLGKS-------ASGLNEF----- 276 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~----- 276 (352)
-.-++|+|..|+|||||++.+++. +..+| +.++++-+.+... +..+.+++...-... ..+..-.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 356889999999999999999985 44345 4566666666543 445555554421111 0011111
Q ss_pred HHHHHHHHHhc--C-CceEEEEecCC
Q 036619 277 QSLMSRIQSSI--K-GKKNFLVLDDV 299 (352)
Q Consensus 277 ~~~~~~l~~~l--~-~kr~LlVlDdv 299 (352)
-...-.+.+++ + ++..||++||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 11223345555 3 89999999998
No 187
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.14 E-value=0.0011 Score=64.22 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=36.4
Q ss_pred CccccccchHHHHHHHHcCccc-------cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESS-------EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+.|.+..++++.+.+..+-. .+-..++-+.++|++|+|||++|+.+++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 4577888888888776532100 01123456889999999999999999985
No 188
>PRK06696 uridine kinase; Validated
Probab=97.14 E-value=0.00056 Score=59.47 Aligned_cols=43 Identities=23% Similarity=0.218 Sum_probs=34.0
Q ss_pred ccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 189 RVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
|.+-+++|.+.+..... ....+|+|.|.+|+||||||+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~---~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNL---TRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCC---CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45666777777765332 46889999999999999999999874
No 189
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.0066 Score=55.41 Aligned_cols=146 Identities=9% Similarity=0.025 Sum_probs=81.0
Q ss_pred hHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC--
Q 036619 192 EKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS-- 269 (352)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-- 269 (352)
..+++.+.+... .-...+.+.|+.|+||+++|..+...--..+.-+ ...+.-...+.+...-.+.
T Consensus 11 ~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--------~~Cg~C~sC~~~~~g~HPD~~ 77 (319)
T PRK06090 11 VWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQS--------EACGFCHSCELMQSGNHPDLH 77 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--------CCCCCCHHHHHHHcCCCCCEE
Confidence 344555555332 2356788999999999999988865321111000 0000001111111111100
Q ss_pred ---CC---CcccHHHHHHHHHHhc-----CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh-HHHHHhC
Q 036619 270 ---AS---GLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVARMMG 337 (352)
Q Consensus 270 ---~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va~~~~ 337 (352)
+. ..-..+++. .+.+.+ .+.+-++|+|++...+....+.|...+..-..++.+|++|.+. .+-..+.
T Consensus 78 ~i~p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 78 VIKPEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred EEecCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00 011223332 222222 3455689999999888788999999998877777777766654 4554444
Q ss_pred C-CCeeeCCCCCCCc
Q 036619 338 S-TDIISIEQLAEEE 351 (352)
Q Consensus 338 ~-~~~~~l~~L~~~e 351 (352)
+ ...+.+.++++++
T Consensus 157 SRCq~~~~~~~~~~~ 171 (319)
T PRK06090 157 SRCQQWVVTPPSTAQ 171 (319)
T ss_pred hcceeEeCCCCCHHH
Confidence 3 5678888887654
No 190
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.11 E-value=0.00053 Score=66.00 Aligned_cols=155 Identities=17% Similarity=0.256 Sum_probs=91.1
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
++++|.+.-...|.+.|.... -..-....|+.|+||||+|+.+...--..+ | ....+++.-...+.|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 457999999999999887644 234456789999999999998875321111 1 1122222222333333
Q ss_pred HHhCC--------CCCCcccHHHHHHHHHHhc-CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEE-ecCChHHH
Q 036619 264 EGLGK--------SASGLNEFQSLMSRIQSSI-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILV-TTRNESVA 333 (352)
Q Consensus 264 ~~l~~--------~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~va 333 (352)
..-.. +..+.++..++.+.+.-.- +++-=..|+|.|+-.....|+.|+..+..-...-+.|+ ||-...|.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 22000 1112223333333332222 34555889999987766789998888876655655544 55555665
Q ss_pred HHh-CCCCeeeCCCCCCC
Q 036619 334 RMM-GSTDIISIEQLAEE 350 (352)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~ 350 (352)
..+ +-...|.+..|+.+
T Consensus 164 ~TIlSRcq~f~fkri~~~ 181 (515)
T COG2812 164 NTILSRCQRFDFKRLDLE 181 (515)
T ss_pred hhhhhccccccccCCCHH
Confidence 544 33667888877754
No 191
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.0029 Score=58.87 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=49.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKG 289 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (352)
..++.++|+.|+||||++.++......+.....+..++.... ....+.+....+.++.......+..++...+.+ +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcC
Confidence 468999999999999999888875322222234555553321 233445555555555432222222233333332 344
Q ss_pred ceEEEEecCCCCC
Q 036619 290 KKNFLVLDDVWDG 302 (352)
Q Consensus 290 kr~LlVlDdvw~~ 302 (352)
+ -+|++|.....
T Consensus 216 ~-DlVLIDTaG~~ 227 (374)
T PRK14722 216 K-HMVLIDTIGMS 227 (374)
T ss_pred C-CEEEEcCCCCC
Confidence 4 45558887543
No 192
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.10 E-value=0.0055 Score=56.27 Aligned_cols=91 Identities=20% Similarity=0.283 Sum_probs=57.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhcc----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------C
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS------------G 272 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------~ 272 (352)
+...++-|+|++|+|||+|+.+++-....... =..++||+....|+..++.+ +++.++.... .
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCC
Confidence 45688999999999999999777654222111 14799999999888877654 4444443211 1
Q ss_pred cccHHHHHHHHHHhcCC--ceEEEEecCCC
Q 036619 273 LNEFQSLMSRIQSSIKG--KKNFLVLDDVW 300 (352)
Q Consensus 273 ~~~~~~~~~~l~~~l~~--kr~LlVlDdvw 300 (352)
......+...+...+.. +--|||+|.+-
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECch
Confidence 11122344555666643 34499999984
No 193
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.09 E-value=0.0052 Score=49.41 Aligned_cols=106 Identities=20% Similarity=0.211 Sum_probs=58.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
-.+++|+|..|.|||||++.+..-.. .....+|+.-.. .++-.. ..+..+.-.-.|...+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~-~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE-QLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc-cCCHHHHHHHHHHHHHhcC
Confidence 46889999999999999999987422 223333332100 000000 0111122222344445556
Q ss_pred eEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHH
Q 036619 291 KNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARM 335 (352)
Q Consensus 291 r~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 335 (352)
.-+++||+.-.. |......+...+... +..||++|.+.+.+..
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 678889987442 334455566666543 3468888888766543
No 194
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.08 E-value=0.00058 Score=58.06 Aligned_cols=105 Identities=24% Similarity=0.264 Sum_probs=49.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhc----
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSI---- 287 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 287 (352)
++..|.|++|.||||+.+.+...... . ...+.+.....--... +.+..+.. ...+..+.......-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~--~-g~~v~~~apT~~Aa~~----L~~~~~~~---a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEA--A-GKRVIGLAPTNKAAKE----LREKTGIE---AQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHH--T-T--EEEEESSHHHHHH----HHHHHTS----EEEHHHHTTEECCEECCSS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHh--C-CCeEEEECCcHHHHHH----HHHhhCcc---hhhHHHHHhcCCccccccc
Confidence 57778999999999999988764332 2 2344444333322222 33332211 011111000000000
Q ss_pred --CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecC
Q 036619 288 --KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTR 328 (352)
Q Consensus 288 --~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR 328 (352)
..+.-+||+|+....+...+..+....+. .|++||+.==
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 12334888888876554455555555544 3677776543
No 195
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.08 E-value=0.0024 Score=58.22 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=55.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCcccHHHHHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSA-----SGLNEFQSLMSRI 283 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 283 (352)
+.-+++-|+|++|+||||||.++.... ...-..++||...+.++.. .+++++... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456899999999999999998776642 2334567899877766553 344444321 1123345555666
Q ss_pred HHhcC-CceEEEEecCCC
Q 036619 284 QSSIK-GKKNFLVLDDVW 300 (352)
Q Consensus 284 ~~~l~-~kr~LlVlDdvw 300 (352)
...++ +.--+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456699999984
No 196
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0094 Score=55.93 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=56.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhc--cCCeEEEEEeCCCCCHH--HHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKR--NFEKVIWVCVSDTFDQI--RIAKAIIEGLGKSASGLNEFQSLMSRIQS 285 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 285 (352)
...++.++|+.|+||||.+..+........ +-..+.-+++. ++... ..+....+.++.+.....+...+...+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 357999999999999999988876433221 12244445544 33332 23445555554432223334444444444
Q ss_pred hcCCceEEEEecCCCCCCcc--ChhHHHHhhcc
Q 036619 286 SIKGKKNFLVLDDVWDGDYN--KWQPFFRCLKN 316 (352)
Q Consensus 286 ~l~~kr~LlVlDdvw~~~~~--~~~~l~~~l~~ 316 (352)
. .+.-+|++|-......+ ....+...+..
T Consensus 252 ~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred h--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 3 33457778877543211 23455555543
No 197
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.07 E-value=0.011 Score=54.30 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=31.6
Q ss_pred hHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhh
Q 036619 192 EKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNND 235 (352)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (352)
-.+.|.+.+.+... ....+|+|.|.=|+|||++.+.+.+.-
T Consensus 4 ~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 4 YAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred HHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566666665432 457999999999999999999998753
No 198
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.06 E-value=0.0082 Score=57.23 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=45.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCH--HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQ--IRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (352)
.+++.++|++|+||||++..+.........-..+..|+... +.. ...+....+.++.......+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C
Confidence 46999999999999999987765422122233566666543 221 1222222333333222222334444444432 2
Q ss_pred CceEEEEecCCCC
Q 036619 289 GKKNFLVLDDVWD 301 (352)
Q Consensus 289 ~kr~LlVlDdvw~ 301 (352)
..=+|++|....
T Consensus 299 -~~DlVlIDt~G~ 310 (424)
T PRK05703 299 -DCDVILIDTAGR 310 (424)
T ss_pred -CCCEEEEeCCCC
Confidence 235677786543
No 199
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.0061 Score=56.21 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=47.1
Q ss_pred CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC-hHHHHHhCC-CCeeeCCCCCCCc
Q 036619 288 KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARMMGS-TDIISIEQLAEEE 351 (352)
Q Consensus 288 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~va~~~~~-~~~~~l~~L~~~e 351 (352)
.+++-++|+|++...+.+.++.|+..+..-.+++.+|++|.+ ..+...+-+ ...+++.++++++
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~ 195 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEA 195 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHH
Confidence 355668899999998888999999999877777766666655 555544433 5678888887654
No 200
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.06 E-value=0.00043 Score=67.07 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=40.2
Q ss_pred ccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 185 EVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
+++|.++.+++|++.|.....+-...-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999433222224568999999999999999999987
No 201
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.05 E-value=0.0022 Score=51.30 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998853
No 202
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.05 E-value=0.0042 Score=51.81 Aligned_cols=104 Identities=18% Similarity=0.104 Sum_probs=57.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEE------eCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC------VSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQ 284 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 284 (352)
-.+++|+|+.|.|||||.+.+..-. ......+++. +.+... .+..+.-.-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 4689999999999999999998632 1222222221 122111 222222233344
Q ss_pred HhcCCceEEEEecCCCCC-CccChhHHHHhhccC--CCCcEEEEecCChHHHHH
Q 036619 285 SSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG--LHGSKILVTTRNESVARM 335 (352)
Q Consensus 285 ~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~IivTTR~~~va~~ 335 (352)
..+..+.-+++||.--.. |......+...+... ..+..||++|.+......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 555566778889987443 223333444444321 123568888888765543
No 203
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.02 E-value=0.00063 Score=54.35 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=61.4
Q ss_pred ccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhh-hccCCeEEEEEeCCCCCHHHHHHHHHHH
Q 036619 187 CGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEV-KRNFEKVIWVCVSDTFDQIRIAKAIIEG 265 (352)
Q Consensus 187 ~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 265 (352)
||.-..++++.+.+..-. ....-|.|.|..|+||+++|+.++....- ...|..+ .+.. .+
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-~~----------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-LP----------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC-TC-----------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh-Cc-----------
Confidence 355556666666664433 22345679999999999999999875322 1122111 0000 00
Q ss_pred hCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccC-CCCcEEEEecCCh
Q 036619 266 LGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG-LHGSKILVTTRNE 330 (352)
Q Consensus 266 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~IivTTR~~ 330 (352)
.+.+.+ .+.-.|+|+|+..-+.+....|...+... ....|+|.||..+
T Consensus 62 --------------~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --------------AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------------HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------------HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111111 24556789999776655666777777643 5678999998864
No 204
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.01 E-value=0.0019 Score=53.35 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=65.3
Q ss_pred cccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHH
Q 036619 186 VCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEG 265 (352)
Q Consensus 186 ~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 265 (352)
++|....+.++++.+..-.. ...+ |.|+|..|+||+.+|+.+++.-. + .-..-+-|+++. .+.+.+-..+.-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~~p-VlI~GE~GtGK~~lA~~IH~~s~-r-~~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SDLP-VLITGETGTGKELLARAIHNNSP-R-KNGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---STS--EEEECSTTSSHHHHHHHHHHCST-T-TTS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC---CCCC-EEEEcCCCCcHHHHHHHHHHhhh-c-ccCCeEEEehhh-hhcchhhhhhhcc
Confidence 46777777777777755432 2234 45999999999999999998421 1 111223344442 2333332233222
Q ss_pred hCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccC------C-----CCcEEEEecCCh
Q 036619 266 LGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG------L-----HGSKILVTTRNE 330 (352)
Q Consensus 266 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~-----~gs~IivTTR~~ 330 (352)
......+..... ...+. +-..=-|+||++.......-..|...+..+ . ...|||.||..+
T Consensus 74 ~~~~~~~~~~~~--~G~l~---~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSDK--KGLLE---QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSEB--EHHHH---HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cccccccccccc--CCcee---eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 111111111000 01111 123346788999776544555666666532 1 146788888753
No 205
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.01 E-value=0.0035 Score=54.84 Aligned_cols=87 Identities=21% Similarity=0.211 Sum_probs=55.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC------------------
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSA------------------ 270 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------------ 270 (352)
+.-+++.|+|.+|+|||+|+.++... ..+ .=..++|++.... ...+.+++ ++++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45689999999999999999887543 122 3357888888764 34454443 2222110
Q ss_pred --CCcccHHHHHHHHHHhcCC-ceEEEEecCCC
Q 036619 271 --SGLNEFQSLMSRIQSSIKG-KKNFLVLDDVW 300 (352)
Q Consensus 271 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw 300 (352)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112345666777777653 55589999974
No 206
>PTZ00035 Rad51 protein; Provisional
Probab=97.01 E-value=0.0066 Score=56.06 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=56.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhh----ccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------Cccc
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---------GLNE 275 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~ 275 (352)
+.-.++.|+|.+|+|||||+..++-..... ..=..++||.....|+..++ .++.+.++.... ...+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 456899999999999999998876533211 01235779998888887774 444555544321 1122
Q ss_pred HHHHHHH---HHHhc-CCceEEEEecCCCC
Q 036619 276 FQSLMSR---IQSSI-KGKKNFLVLDDVWD 301 (352)
Q Consensus 276 ~~~~~~~---l~~~l-~~kr~LlVlDdvw~ 301 (352)
.+++... +...+ ..+--|||+|.+..
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 3333333 33333 34456999999853
No 207
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.01 E-value=0.014 Score=55.63 Aligned_cols=56 Identities=36% Similarity=0.370 Sum_probs=35.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCH--HHHHHHHHHHhCC
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQ--IRIAKAIIEGLGK 268 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~ 268 (352)
.+.++.++|.+|+||||++..+..... +..+ .++-|++. .+.. ...+..+...++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~-kV~lV~~D-~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KKGL-KVGLVAAD-TYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEecCC-CCCHHHHHHHHHHHHHcCC
Confidence 478999999999999999988886432 2223 33334432 2222 3445555665543
No 208
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0017 Score=65.27 Aligned_cols=126 Identities=23% Similarity=0.244 Sum_probs=70.0
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccC-----CeEEEEEeCCCCCHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF-----EKVIWVCVSDTFDQIRI 258 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-----~~~~wv~vs~~~~~~~~ 258 (352)
..++||++|+.++++.|.... ++-.| ++|.+|+|||++|.-+...- +.+.- +..++. .
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~----KNNPv--LiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s-----L----- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRT----KNNPV--LVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS-----L----- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccC----CCCCe--EecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-----e-----
Confidence 458999999999999998755 33334 58999999999997776631 11111 001100 0
Q ss_pred HHHHHHHhCCCCCCcccHHH-HHHHHHHhcCCceEEEEecCCCCC---------CccChhHHHHhhccCCCCcEEEEecC
Q 036619 259 AKAIIEGLGKSASGLNEFQS-LMSRIQSSIKGKKNFLVLDDVWDG---------DYNKWQPFFRCLKNGLHGSKILVTTR 328 (352)
Q Consensus 259 ~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivTTR 328 (352)
++..-+.+..-. .+.++ +...+.+.-+.++..|++|.++.- ..+.-+.|+++|..+.-. +|=.||-
T Consensus 233 --D~g~LvAGakyR-GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~-~IGATT~ 308 (786)
T COG0542 233 --DLGSLVAGAKYR-GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR-CIGATTL 308 (786)
T ss_pred --cHHHHhcccccc-CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeE-EEEeccH
Confidence 111111111111 23333 333333333455899999998651 123455567777665322 3566665
Q ss_pred Ch
Q 036619 329 NE 330 (352)
Q Consensus 329 ~~ 330 (352)
++
T Consensus 309 ~E 310 (786)
T COG0542 309 DE 310 (786)
T ss_pred HH
Confidence 54
No 209
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.99 E-value=0.0042 Score=51.64 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=60.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC--CCCHHHHHHHHHHHhCCCCC--C-------cccHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFDQIRIAKAIIEGLGKSAS--G-------LNEFQSL 279 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~--~-------~~~~~~~ 279 (352)
-.+++|+|..|.|||||.+.+..-. ......+++.-.. ..+.......+. .+..... . .+.-+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHH
Confidence 3589999999999999999998632 2222223222110 011111111100 0000000 0 1111222
Q ss_pred HHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChHHHH
Q 036619 280 MSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNESVAR 334 (352)
Q Consensus 280 ~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~va~ 334 (352)
.-.|...|-.+.-+++||+.-.. |......+...+... ..|..||++|.+.+...
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 23344445556668889987543 323344455555432 23667888888887664
No 210
>CHL00176 ftsH cell division protein; Validated
Probab=96.99 E-value=0.003 Score=63.17 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=53.7
Q ss_pred CccccccchHHHH---HHHHcCccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHH
Q 036619 184 GEVCGRVDEKSEL---FSKLLCESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIR 257 (352)
Q Consensus 184 ~~~~gr~~~~~~l---~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (352)
.++.|.++.++++ +.+|..... -+....+-+.++|++|+|||+||+.++... . .-|+.++.. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----H
Confidence 4577876665554 444433221 011234568899999999999999998742 1 123333211 1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCC
Q 036619 258 IAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWD 301 (352)
Q Consensus 258 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 301 (352)
+. ....+ .....+...+.......+++|+||++..
T Consensus 252 f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 252 FV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred HH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchh
Confidence 11 11100 0112233344445567789999999953
No 211
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.0045 Score=56.84 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=41.5
Q ss_pred CceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh-HHHHHhCC-CCeeeCCCCCCCc
Q 036619 289 GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVARMMGS-TDIISIEQLAEEE 351 (352)
Q Consensus 289 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va~~~~~-~~~~~l~~L~~~e 351 (352)
+++-++|+|++...+...-+.+...+.....++.+|++|.+. .+...+.+ ...+++.+++.++
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~ 176 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEE 176 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHH
Confidence 444556679888777667777888777655566677777765 45444333 5667788877654
No 212
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.0076 Score=55.08 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=45.4
Q ss_pred CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC-hHHHHHhCC-CCeeeCCCCCCCc
Q 036619 288 KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARMMGS-TDIISIEQLAEEE 351 (352)
Q Consensus 288 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~va~~~~~-~~~~~l~~L~~~e 351 (352)
.+++-++|||++...+...-+.|...+..-..++.+|++|.+ ..+...+.+ ...+.+.+++.++
T Consensus 111 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~ 176 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHE 176 (319)
T ss_pred cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHH
Confidence 356679999999888777778888888876667777776664 445444433 5667787776654
No 213
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.97 E-value=0.0048 Score=50.79 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=63.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC--CCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (352)
-.+++|+|..|.|||||.+.+..- .......+++.-.. ..+..... ...++-.. ..+..+...-.+...+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~-qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDAR---RAGIAMVY-QLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHH---hcCeEEEE-ecCHHHHHHHHHHHHHh
Confidence 468999999999999999999863 22334444443211 11111111 11111100 12222232333445555
Q ss_pred CceEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChHHHH
Q 036619 289 GKKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNESVAR 334 (352)
Q Consensus 289 ~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~va~ 334 (352)
.+.-++++|+.-.. |......+...+... ..|..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 66778889987443 333445555555432 23667888888876444
No 214
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.97 E-value=0.0089 Score=56.83 Aligned_cols=25 Identities=40% Similarity=0.357 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+.++.++|.+|+||||++..+...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998777653
No 215
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.96 E-value=0.0046 Score=52.88 Aligned_cols=121 Identities=17% Similarity=0.237 Sum_probs=63.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---cccHHHHHHHHHHhc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASG---LNEFQSLMSRIQSSI 287 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l 287 (352)
..++.|.|+.|.||||+.+.+..-. +..+. .++|.+.. .. -.+...|...++..... ......-...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999999887542 22121 11222111 11 12333444443332111 111110011122222
Q ss_pred --CCceEEEEecCCCCC-CccC----hhHHHHhhccCCCCcEEEEecCChHHHHHhCC
Q 036619 288 --KGKKNFLVLDDVWDG-DYNK----WQPFFRCLKNGLHGSKILVTTRNESVARMMGS 338 (352)
Q Consensus 288 --~~kr~LlVlDdvw~~-~~~~----~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~ 338 (352)
..++-|+++|..-.. +..+ ...+...+.. .|+.+|++|...+++..+..
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 356789999998542 1112 1123333333 37889999999999887653
No 216
>PRK09354 recA recombinase A; Provisional
Probab=96.95 E-value=0.0043 Score=57.07 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=56.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCcccHHHHHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSA-----SGLNEFQSLMSRI 283 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 283 (352)
+.-+++-|+|++|+|||||+.+++... ...-..++||.....++.. .+++++... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456899999999999999997776542 3334678899888877753 344444321 1122355555666
Q ss_pred HHhcC-CceEEEEecCCC
Q 036619 284 QSSIK-GKKNFLVLDDVW 300 (352)
Q Consensus 284 ~~~l~-~kr~LlVlDdvw 300 (352)
...++ ++--|||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 66554 456699999984
No 217
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.0056 Score=59.15 Aligned_cols=25 Identities=40% Similarity=0.355 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+++|+|++|+||||++.++...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3589999999999999999887764
No 218
>PRK10867 signal recognition particle protein; Provisional
Probab=96.94 E-value=0.01 Score=56.42 Aligned_cols=25 Identities=44% Similarity=0.464 Sum_probs=21.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
..+.+|.++|.+|+||||++..+..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999998866655
No 219
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.91 E-value=0.0044 Score=61.21 Aligned_cols=135 Identities=14% Similarity=0.143 Sum_probs=73.7
Q ss_pred CCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 036619 183 EGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 183 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 262 (352)
...++|....+.++++.+..-. ....-|.|+|..|+|||++|+.+++.-. + .-..-+.|+++.-.. ..+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~-r-~~~pfv~i~c~~~~~--~~~~~- 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLSP-R-AKRPFVKVNCAALSE--TLLES- 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhCC-C-CCCCeEEeecCCCCH--HHHHH-
Confidence 3578999999999888776543 2233456999999999999999997421 1 111233344443211 22221
Q ss_pred HHHhCCCCCCc-ccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC---C--------CcEEEEecCCh
Q 036619 263 IEGLGKSASGL-NEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL---H--------GSKILVTTRNE 330 (352)
Q Consensus 263 ~~~l~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~---~--------gs~IivTTR~~ 330 (352)
.+.+...+. ..... ...........=.|+||+|..........|...+..+. . ..+||.||...
T Consensus 266 --~lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 266 --ELFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD 341 (534)
T ss_pred --HHcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC
Confidence 121111100 00000 00000112234568999998766566777777775432 1 24788877543
No 220
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.90 E-value=0.009 Score=52.47 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=73.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC-----CCCHHHHHHHHHHHhCCCCC------CcccHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-----TFDQIRIAKAIIEGLGKSAS------GLNEFQSL 279 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~~ 279 (352)
-.+++|||..|.|||||++.+.. ....-...++..-.+ .....+-..++++.++.... ..-+..+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 46899999999999999999996 333223333333211 11233345556666654321 11112222
Q ss_pred H-HHHHHhcCCceEEEEecCCCCCCc-cChhHHHHhhcc--CCCCcEEEEecCChHHHHHhCC
Q 036619 280 M-SRIQSSIKGKKNFLVLDDVWDGDY-NKWQPFFRCLKN--GLHGSKILVTTRNESVARMMGS 338 (352)
Q Consensus 280 ~-~~l~~~l~~kr~LlVlDdvw~~~~-~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~ 338 (352)
+ -.|...|.-+.-|||.|..-+..+ ..-..+...+.+ ...|-..+..|.+-.|++.++.
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 2 335667788899999998755422 222334444442 2336668888898888887654
No 221
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.90 E-value=0.0041 Score=63.31 Aligned_cols=134 Identities=16% Similarity=0.233 Sum_probs=73.8
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHH-H
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKA-I 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~-i 262 (352)
..++|+...+..+.+.+..-. ....-|.|+|..|+|||++|+.+++... +. -...+.+++..-. ...+.. +
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~-r~-~~~~v~i~c~~~~--~~~~~~~l 447 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSG-RN-NRRMVKMNCAAMP--AGLLESDL 447 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcC-CC-CCCeEEEecccCC--hhHhhhhh
Confidence 468999988888877765433 2234577999999999999999987421 11 1233444444321 122221 1
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC-----------CCcEEEEecCCh
Q 036619 263 IEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRNE 330 (352)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTTR~~ 330 (352)
.....+...+.. ......+ -....=.|+||+|.....+....|...+..+. .+.|||.||...
T Consensus 448 fg~~~~~~~g~~--~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 448 FGHERGAFTGAS--AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cCcccccccccc--cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 111111001100 0011111 12234579999998766556667777775431 245888888654
No 222
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.87 E-value=0.0066 Score=59.33 Aligned_cols=51 Identities=29% Similarity=0.277 Sum_probs=33.3
Q ss_pred CccccccchHHHHHHHH---cCccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKL---LCESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|.++.++++.+.+ ..... .+...++-+.++|++|+|||+||+.+.+.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45778777666554433 22110 01123455789999999999999999874
No 223
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.0077 Score=53.71 Aligned_cols=90 Identities=20% Similarity=0.198 Sum_probs=61.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHH-hCC----CCCCcccHHHHHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEG-LGK----SASGLNEFQSLMSRI 283 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~----~~~~~~~~~~~~~~l 283 (352)
+.-+++=|+|+.|.||||||-+++-. ....-..++||+.-+.++++.+.. +... +.. ..........+...+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 56789999999999999999776653 444455899999999999887643 3333 221 122223334455555
Q ss_pred HHhcCCceEEEEecCCCC
Q 036619 284 QSSIKGKKNFLVLDDVWD 301 (352)
Q Consensus 284 ~~~l~~kr~LlVlDdvw~ 301 (352)
......+--|||+|.+-.
T Consensus 135 ~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 135 ARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHhccCCCCEEEEecCcc
Confidence 555555567999999844
No 224
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.87 E-value=0.007 Score=55.40 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=56.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhc----cCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------Cccc
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---------GLNE 275 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~ 275 (352)
+.-.++-|+|.+|+|||||+.+++-...... .=..++||.....|+..++. ++++.++.... ...+
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~ 171 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYN 171 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCC
Confidence 4468899999999999999977765432210 11379999999988887754 44444443210 0011
Q ss_pred ---HHHHHHHHHHhcCCc---eEEEEecCCCC
Q 036619 276 ---FQSLMSRIQSSIKGK---KNFLVLDDVWD 301 (352)
Q Consensus 276 ---~~~~~~~l~~~l~~k---r~LlVlDdvw~ 301 (352)
...+...+.+.+... --+||+|.+-.
T Consensus 172 ~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 172 SNHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 112334455555332 44999999853
No 225
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.87 E-value=0.0062 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+|+|.|..|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 226
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.01 Score=49.24 Aligned_cols=119 Identities=20% Similarity=0.237 Sum_probs=62.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhC---CCC---CC--------cccH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLG---KSA---SG--------LNEF 276 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~---~~~---~~--------~~~~ 276 (352)
-.+++|+|..|.|||||.+.+.... ......+++.-..-.+.. ..+...++ ... .. .+.-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4689999999999999999998642 122333333211000000 01111111 000 00 1112
Q ss_pred HHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChHHHHH
Q 036619 277 QSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNESVARM 335 (352)
Q Consensus 277 ~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~va~~ 335 (352)
+...-.+...|..++=++++|+.-.. |......+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 22223455566677788999987543 323344455555432 236779999988876653
No 227
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.84 E-value=0.0066 Score=51.46 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
||+|.|.+|+||||||+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
No 228
>PRK14974 cell division protein FtsY; Provisional
Probab=96.83 E-value=0.017 Score=53.23 Aligned_cols=56 Identities=34% Similarity=0.385 Sum_probs=33.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCC--HHHHHHHHHHHhCC
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFD--QIRIAKAIIEGLGK 268 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~ 268 (352)
++.++.++|++|+||||++..+..... ...+ .++.+. .+.+. ....+......++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv 196 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGV 196 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCC
Confidence 478999999999999998888776422 2233 333343 33332 22334455555543
No 229
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.83 E-value=0.012 Score=57.85 Aligned_cols=142 Identities=18% Similarity=0.109 Sum_probs=87.2
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhh------hhccCCeEEEEEeCCCCCHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDE------VKRNFEKVIWVCVSDTFDQIR 257 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------~~~~F~~~~wv~vs~~~~~~~ 257 (352)
..+-+|+.+..+|..++...-+. +..-+.+-|.|.+|.|||.++..|.+.-. --..|+ .+.|+.-.-....+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 35678999999998887544322 13345899999999999999999998522 112343 34455555567889
Q ss_pred HHHHHHHHhCCCCCC-cccHHHHHHHHHH-hcCCceEEEEecCCCCCCccChhHHHHhhcc-CCCCcEEEEec
Q 036619 258 IAKAIIEGLGKSASG-LNEFQSLMSRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN-GLHGSKILVTT 327 (352)
Q Consensus 258 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~IivTT 327 (352)
+...|...+.+.... ...++.+...+.. .-+.+..+|++|++...=...-+-+...|.+ ..++||++|.+
T Consensus 474 ~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 999999999876432 2223332222220 0134568889998743210112334455553 35688876654
No 230
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.82 E-value=0.0041 Score=57.31 Aligned_cols=134 Identities=13% Similarity=0.147 Sum_probs=71.5
Q ss_pred ccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHH
Q 036619 185 EVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIE 264 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 264 (352)
.++|....+.++.+.+..-. ....-|.|+|..|+||+++|+.++..- ...-..-+.|++... +...+-..+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~s--~r~~~pfv~v~c~~~-~~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAAL-NENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhC--CccCCCeEEEeCCCC-CHHHHHHHHcc
Confidence 58899888888888776544 223446699999999999999998631 111112334444432 22222222221
Q ss_pred HhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC----C-------CcEEEEecCCh
Q 036619 265 GLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL----H-------GSKILVTTRNE 330 (352)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~----~-------gs~IivTTR~~ 330 (352)
.-.....+... .....+ .....=.|+||+|..........|...+..+. . ..+||.||...
T Consensus 80 ~~~~~~~g~~~--~~~g~l---~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 80 HEAGAFTGAQK--RHPGRF---ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred ccccccCCccc--ccCCch---hccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 10000000000 000111 12223358899998766556677777775432 1 25788877543
No 231
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.016 Score=53.84 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=52.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhc
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-DQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSI 287 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 287 (352)
...+++.++|+.|+||||++..+.... .... ..+.+|+....- ....-++...+.++.......+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l-~~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL-LKQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH-HHcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 346899999999999999998887642 2222 345566654321 2244555555555433222234455544444332
Q ss_pred C-CceEEEEecCCCC
Q 036619 288 K-GKKNFLVLDDVWD 301 (352)
Q Consensus 288 ~-~kr~LlVlDdvw~ 301 (352)
. +..=+|++|-...
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3345777787754
No 232
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.81 E-value=0.014 Score=48.40 Aligned_cols=22 Identities=55% Similarity=0.573 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999888864
No 233
>PRK07667 uridine kinase; Provisional
Probab=96.80 E-value=0.002 Score=54.62 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=29.7
Q ss_pred HHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 193 KSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+.+.+.+.... ....+|+|-|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665544 34589999999999999999998874
No 234
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.77 E-value=0.0071 Score=52.76 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....+++|.|+.|.|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55799999999999999999988864
No 235
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.76 E-value=0.011 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
..+.+|+|.|..|+||||||+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987754
No 236
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.74 E-value=0.001 Score=55.14 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=53.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhh-ccCCeEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSDTFDQI---RIAKAIIEGLGKSASGLNEFQSLMSRIQSS 286 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 286 (352)
..++.+.|+.|+|||.||+.+..- .. +.....+-++++.-..-. ..+..+... .+. ...
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~----~~~--~v~--------- 65 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSEGDDVESSVSKLLGS----PPG--YVG--------- 65 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHH----TTC--HHH---------
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccccchHHhhhhhhhhc----ccc--eee---------
Confidence 578889999999999999999873 33 344456666665543311 111111110 000 000
Q ss_pred cCCceEEEEecCCCCCCc-----------cChhHHHHhhcc
Q 036619 287 IKGKKNFLVLDDVWDGDY-----------NKWQPFFRCLKN 316 (352)
Q Consensus 287 l~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~ 316 (352)
....-+|+||++..... ..|+.|+..+..
T Consensus 66 -~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 66 -AEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp -HHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred -ccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 00111999999988877 678888888864
No 237
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.72 E-value=0.0016 Score=61.96 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=36.0
Q ss_pred CccccccchHHHHHHHHcCccc-------cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESS-------EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|.+..+++|.+.+.-.-. -+-....-+.++|++|+|||+||+.+++.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4578888888888776632110 01123456779999999999999999984
No 238
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.71 E-value=0.013 Score=51.55 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=18.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+..|+|++|+|||+|+..+.-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999877653
No 239
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.017 Score=55.17 Aligned_cols=122 Identities=23% Similarity=0.225 Sum_probs=66.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (352)
..+..+.+.|++|+|||+||..+.. ...|..+=-++..+-..+.+ ......+.....+.-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~sE---------------saKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLSE---------------SAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCccH---------------HHHHHHHHHHHHHhhc
Confidence 4577788999999999999988885 34564333222111000000 0011122233334445
Q ss_pred CceEEEEecCCCCC-----Cc-----cChhHHHHhhccC-CCCcEE--EEecCChHHHHHhCC----CCeeeCCCCCC
Q 036619 289 GKKNFLVLDDVWDG-----DY-----NKWQPFFRCLKNG-LHGSKI--LVTTRNESVARMMGS----TDIISIEQLAE 349 (352)
Q Consensus 289 ~kr~LlVlDdvw~~-----~~-----~~~~~l~~~l~~~-~~gs~I--ivTTR~~~va~~~~~----~~~~~l~~L~~ 349 (352)
..--.||+||+..- -- -....|+-.|... ..|-|. +-||....|...|+- ...|++..|+.
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 66679999998331 00 1123333444433 335554 447777788887764 44667766654
No 240
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.015 Score=53.59 Aligned_cols=147 Identities=10% Similarity=0.105 Sum_probs=81.5
Q ss_pred hHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC--
Q 036619 192 EKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS-- 269 (352)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-- 269 (352)
.-+++.+.+..+. -..-+.+.|+.|+||+++|..+...--..+..+. ..++.=...+.+...-.+.
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~ 77 (334)
T PRK07993 10 DYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGH-------KSCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_pred HHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHHcCCCCCEE
Confidence 3455666664432 3567789999999999999887653211111000 0001001111111100000
Q ss_pred ---CC---CcccHHHHHHHHHHhc-----CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC-hHHHHHhC
Q 036619 270 ---AS---GLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARMMG 337 (352)
Q Consensus 270 ---~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~va~~~~ 337 (352)
+. ..-..+++.+ +.+.+ .+++-++|+|++..++.+.-+.|+..+..-..++.+|++|.+ ..+...+.
T Consensus 78 ~i~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 78 TLTPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred EEecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00 0112333222 22222 466779999999988878888999999877777777777765 44554443
Q ss_pred C-CCeeeCCCCCCCc
Q 036619 338 S-TDIISIEQLAEEE 351 (352)
Q Consensus 338 ~-~~~~~l~~L~~~e 351 (352)
+ ...+.+.++++++
T Consensus 157 SRCq~~~~~~~~~~~ 171 (334)
T PRK07993 157 SRCRLHYLAPPPEQY 171 (334)
T ss_pred hccccccCCCCCHHH
Confidence 3 5567888777654
No 241
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.68 E-value=0.013 Score=51.29 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=65.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC----------------C--
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS----------------A-- 270 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~----------------~-- 270 (352)
+.-+++.|.|.+|+|||+||.++... .. ..-..++|++... +...+.+.+. +++-. .
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~ 93 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGG 93 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEeccccc
Confidence 45689999999999999999665442 12 2345788888765 4445554432 22110 0
Q ss_pred ------------CCcccHHHHHHHHHHhcCC-ceEEEEecCCCCCCccC---h----hHHHHhhccCCCCcEEEEecCC
Q 036619 271 ------------SGLNEFQSLMSRIQSSIKG-KKNFLVLDDVWDGDYNK---W----QPFFRCLKNGLHGSKILVTTRN 329 (352)
Q Consensus 271 ------------~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~~~~~---~----~~l~~~l~~~~~gs~IivTTR~ 329 (352)
....+.+.+...+.+.++. +.-++|+|.+-.-.... . ..+...+. ..|..+|+|+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk--~~~~t~llt~~~ 170 (237)
T TIGR03877 94 IGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITKPAMARSIVMQLKRVLS--GLGCTSIFVSQV 170 (237)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCChHHHHHHHHHHHHHHH--hCCCEEEEEECc
Confidence 0123556667777766633 34479999985421111 1 11222332 447778888754
No 242
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.026 Score=48.69 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=34.1
Q ss_pred HHHHhcCCceEEEEecCCCCC-CccChhHHHHhhcc--CCCCcEEEEecCChHHHHHhCC
Q 036619 282 RIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKN--GLHGSKILVTTRNESVARMMGS 338 (352)
Q Consensus 282 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~ 338 (352)
.|.+.|.-+.-+||+|..-+. |...-..+...|.. ...+--+|+.|.+-.++..++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCD 210 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhh
Confidence 355667778889999987443 11112223333332 2335568889999887776654
No 243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.67 E-value=0.0037 Score=64.12 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=36.2
Q ss_pred CccccccchHHHHHHHHcCccc-------cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESS-------EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|.+..++++.+.+...-. -+-...+-+.++|++|+|||+||+.+.+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 3578999888888776632110 01123456789999999999999999874
No 244
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.66 E-value=0.041 Score=49.14 Aligned_cols=129 Identities=14% Similarity=0.121 Sum_probs=68.6
Q ss_pred hHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 036619 192 EKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS 271 (352)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 271 (352)
..+.++..|... .....+.|+|+.|.|||||.+.+.... ......+++.-.. .....-..++...+..-+.
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGKK-VGIVDERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCEE-eecchhHHHHHHHhccccc
Confidence 445556666532 235789999999999999999999742 2222333332100 0000011233322221100
Q ss_pred --------CcccHHHHHHHHHHhc-CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHHHH
Q 036619 272 --------GLNEFQSLMSRIQSSI-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVARM 335 (352)
Q Consensus 272 --------~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 335 (352)
-...... ...+...+ ...+-+|++|.+-.. +.+..+...+. .|..||+||....+...
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 0111111 11233332 357889999998543 44555555543 47789999998877554
No 245
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.66 E-value=0.021 Score=49.85 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=31.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 262 (352)
.-.++.|.|.+|+|||||+.++... ..++. ..+++++.. .+...+++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCC--CCHHHHHHHH
Confidence 3468999999999999998555443 22333 345666633 3455666665
No 246
>PRK05439 pantothenate kinase; Provisional
Probab=96.66 E-value=0.016 Score=52.65 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
..+-+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5679999999999999999988876
No 247
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.66 E-value=0.0016 Score=50.84 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (352)
|.|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999875
No 248
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.65 E-value=0.027 Score=47.15 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=32.4
Q ss_pred HHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChHHHHH
Q 036619 283 IQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNESVARM 335 (352)
Q Consensus 283 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~va~~ 335 (352)
|...+-.++-+++||+--.. |......+...+..- ..|..||++|.+......
T Consensus 115 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred HHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 44555667778999987443 334455555555432 236678999988654433
No 249
>PTZ00301 uridine kinase; Provisional
Probab=96.65 E-value=0.0031 Score=54.13 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+.+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999988763
No 250
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.65 E-value=0.0019 Score=55.45 Aligned_cols=26 Identities=35% Similarity=0.426 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+...+|+|+|++|+|||||++.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999864
No 251
>PHA02244 ATPase-like protein
Probab=96.65 E-value=0.0084 Score=55.38 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (352)
+.|+|++|+|||+||+.+...
T Consensus 122 VLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999874
No 252
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.64 E-value=0.04 Score=47.11 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=32.8
Q ss_pred HHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHH
Q 036619 283 IQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARM 335 (352)
Q Consensus 283 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 335 (352)
+...+-.+.=+++||+.-.. |....+.+...+.....|..||++|.+...+..
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 34444556678889987543 333455555666543346678888888776643
No 253
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.028 Score=48.10 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhcc-CCCCcEEEEecCChHHHHHhCCCCee
Q 036619 277 QSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKN-GLHGSKILVTTRNESVARMMGSTDII 342 (352)
Q Consensus 277 ~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~ 342 (352)
+.-...|.+.+-=++-|.|||...+- |.+..+.+...+.. ...|+-+|+.|..+.++..+.+..+|
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 44456666766677789999998764 22333334333332 23467799999999999987664443
No 254
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.62 E-value=0.0019 Score=55.41 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=23.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+..+|+|.|.+|+|||||++.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 255
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.61 E-value=0.024 Score=50.54 Aligned_cols=103 Identities=12% Similarity=0.203 Sum_probs=51.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC-
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-DQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIK- 288 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 288 (352)
..+++++|.+|+||||++..+.... ...=..+.+++..... ....-+....+.++-......+...+...+...-.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 4689999999999999998887542 1111245555543221 12222223333232221122333444443333212
Q ss_pred CceEEEEecCCCCC--CccChhHHHHhhc
Q 036619 289 GKKNFLVLDDVWDG--DYNKWQPFFRCLK 315 (352)
Q Consensus 289 ~kr~LlVlDdvw~~--~~~~~~~l~~~l~ 315 (352)
.+.=++++|..... +.+....+...+.
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 23457788877554 2233444544443
No 256
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.02 Score=50.21 Aligned_cols=124 Identities=19% Similarity=0.260 Sum_probs=67.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhh-----hh------ccC---CeEEEEEeCCC------CCHH--------------
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDE-----VK------RNF---EKVIWVCVSDT------FDQI-------------- 256 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~vs~~------~~~~-------------- 256 (352)
-..++|+|+.|.|||||.+.+..--+ +. ..+ ..+.||.=... .++.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 37899999999999999999987211 10 011 24555532111 1122
Q ss_pred --------HHHHHHHHHhCCCC-----CCcccHHHH-HHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC-CCC
Q 036619 257 --------RIAKAIIEGLGKSA-----SGLNEFQSL-MSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHG 320 (352)
Q Consensus 257 --------~~~~~i~~~l~~~~-----~~~~~~~~~-~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~g 320 (352)
+...+.++.++... -+.-+..+. .-.|.+.|..+.=||+||.--.. |...-..|...+... ..|
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 22333444444321 111122333 34456778889999999975332 222233344444321 228
Q ss_pred cEEEEecCChHHHH
Q 036619 321 SKILVTTRNESVAR 334 (352)
Q Consensus 321 s~IivTTR~~~va~ 334 (352)
.-||++|.+-+...
T Consensus 190 ~tIl~vtHDL~~v~ 203 (254)
T COG1121 190 KTVLMVTHDLGLVM 203 (254)
T ss_pred CEEEEEeCCcHHhH
Confidence 88999999865443
No 257
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.61 E-value=0.0036 Score=52.66 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=58.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---CCcccHHHHHHHHHHhcC-
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSA---SGLNEFQSLMSRIQSSIK- 288 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~l~- 288 (352)
++.|.|+.|.||||+.+.+.-... -.+-.+.+|..-.. -.....++..++... .+......-...+...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~-la~~G~~v~a~~~~----~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI-MAQIGSFVPAESAE----LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH-HHHhCCCeeehheE----ecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 467999999999999999884322 12222222211000 001111111111111 111112111223444443
Q ss_pred -CceEEEEecCCCCC-CccChhHH----HHhhccCCCCcEEEEecCChHHHHHhC
Q 036619 289 -GKKNFLVLDDVWDG-DYNKWQPF----FRCLKNGLHGSKILVTTRNESVARMMG 337 (352)
Q Consensus 289 -~kr~LlVlDdvw~~-~~~~~~~l----~~~l~~~~~gs~IivTTR~~~va~~~~ 337 (352)
.++-|+++|..-.. +...-..+ ...+.. ..|+.+|++|.+.++...+.
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 37889999998553 21111222 222222 23677999999998887653
No 258
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.60 E-value=0.0084 Score=55.26 Aligned_cols=131 Identities=12% Similarity=0.140 Sum_probs=66.6
Q ss_pred cccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhh-hhccCCeEEEEEeCCCCCHHHHHHHHHH
Q 036619 186 VCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDE-VKRNFEKVIWVCVSDTFDQIRIAKAIIE 264 (352)
Q Consensus 186 ~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 264 (352)
++|....+.++.+.+..-. ..-.-|.|+|..|+||+++|+.+++... -...| +-|+++.-. ...+...+
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pf---v~vnc~~~~--~~~l~~~l- 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPL---VKLNCAALS--ENLLDSEL- 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCe---EEEeCCCCC--hHHHHHHH-
Confidence 3566666666666665433 2234467999999999999999986421 11222 334444321 12222211
Q ss_pred HhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC-----------CCcEEEEecCC
Q 036619 265 GLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRN 329 (352)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTTR~ 329 (352)
++........... ...........=.|+||+|..........|...+..+. ...+||.||..
T Consensus 71 -fG~~~g~~~ga~~--~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 71 -FGHEAGAFTGAQK--RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred -hccccccccCccc--ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 1111000000000 00000112234568999997765555666777775432 23478887753
No 259
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.59 E-value=0.0079 Score=58.98 Aligned_cols=134 Identities=16% Similarity=0.237 Sum_probs=75.2
Q ss_pred CCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 036619 183 EGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 183 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 262 (352)
...++|....+.++.+.+..-. ....-|.|.|..|+|||++|+.+++... ..-...+.|+++.-.+ ..+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~--~~~e~- 256 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE--SLAES- 256 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh--HHHHH-
Confidence 3568999999988888886544 2234567999999999999999997421 1112334455554322 22211
Q ss_pred HHHhCCCCCCc-cc-HHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC-----------CCcEEEEecCC
Q 036619 263 IEGLGKSASGL-NE-FQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRN 329 (352)
Q Consensus 263 ~~~l~~~~~~~-~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTTR~ 329 (352)
.+.+...+. .. .......+. ....=.|+||+|.....+....|...+..+. ...|||.||..
T Consensus 257 --~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 257 --ELFGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred --HhcCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 122211100 00 000000011 1223347899998776566777777776432 13488888854
Q ss_pred h
Q 036619 330 E 330 (352)
Q Consensus 330 ~ 330 (352)
.
T Consensus 332 ~ 332 (509)
T PRK05022 332 D 332 (509)
T ss_pred C
Confidence 3
No 260
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.042 Score=49.36 Aligned_cols=61 Identities=11% Similarity=0.181 Sum_probs=43.6
Q ss_pred CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC-hHHHHHhCC-CCeeeCCCCC
Q 036619 288 KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN-ESVARMMGS-TDIISIEQLA 348 (352)
Q Consensus 288 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~va~~~~~-~~~~~l~~L~ 348 (352)
.+++-++|+|++...+.+.++.|+..+..-..++.+|++|.+ ..+...+-+ ...+++.++.
T Consensus 93 e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~ 155 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEE 155 (290)
T ss_pred CCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchh
Confidence 356668899999988888999999999877777776666665 455544333 5566666654
No 261
>PRK04132 replication factor C small subunit; Provisional
Probab=96.57 E-value=0.014 Score=59.79 Aligned_cols=116 Identities=12% Similarity=0.087 Sum_probs=71.5
Q ss_pred cCCCcHHHHHHHHHhhhhhhccC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEec
Q 036619 219 LGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLD 297 (352)
Q Consensus 219 ~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 297 (352)
|.++||||+|..++++. ..+.+ ...+-+++|+..+... .+++++.+....+ .-..+.-++|||
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~--------------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINV-IREKVKEFARTKP--------------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC--------------cCCCCCEEEEEE
Confidence 66789999999999852 11222 2356677777555443 3344333221100 001245799999
Q ss_pred CCCCCCccChhHHHHhhccCCCCcEEEEecC-ChHHHHHhCC-CCeeeCCCCCCC
Q 036619 298 DVWDGDYNKWQPFFRCLKNGLHGSKILVTTR-NESVARMMGS-TDIISIEQLAEE 350 (352)
Q Consensus 298 dvw~~~~~~~~~l~~~l~~~~~gs~IivTTR-~~~va~~~~~-~~~~~l~~L~~~ 350 (352)
++...+....+.|...+..-...+++|++|. ...+...+.+ ...+++.+++++
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~ 692 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDE 692 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHH
Confidence 9998877778888888876445566665554 4455444433 567888888754
No 262
>PRK08233 hypothetical protein; Provisional
Probab=96.57 E-value=0.002 Score=53.77 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999864
No 263
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.021 Score=54.06 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=26.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEE
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 248 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 248 (352)
...+++++|+.|+||||+...+............+..++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~ 228 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLT 228 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 357999999999999999987776422222223444444
No 264
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.55 E-value=0.023 Score=48.62 Aligned_cols=61 Identities=15% Similarity=0.272 Sum_probs=37.5
Q ss_pred HHHhcCCceEEEEecCCCCC-CccChh-HHHHhhccCC-C-CcEEEEecCChHHHHHhCCCCeeeCC
Q 036619 283 IQSSIKGKKNFLVLDDVWDG-DYNKWQ-PFFRCLKNGL-H-GSKILVTTRNESVARMMGSTDIISIE 345 (352)
Q Consensus 283 l~~~l~~kr~LlVlDdvw~~-~~~~~~-~l~~~l~~~~-~-gs~IivTTR~~~va~~~~~~~~~~l~ 345 (352)
+...+....-+++||+.-.. +..... .+...+.... . |..||++|.+.+.... +..++.+.
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 45566678889999998553 223344 4555554322 2 5568999988877653 34555443
No 265
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.54 E-value=0.0021 Score=57.49 Aligned_cols=96 Identities=28% Similarity=0.289 Sum_probs=47.4
Q ss_pred HHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCc
Q 036619 194 SELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGL 273 (352)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 273 (352)
..+++.++... +-+.++|+.|+|||++++.....- -...| ...-++.+...+...+ +.+++.--....+.
T Consensus 23 ~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l-~~~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 23 SYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSL-DSDKY-LVITINFSAQTTSNQL-QKIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCS-TTCCE-EEEEEES-TTHHHHHH-HHCCCTTECECTTE
T ss_pred HHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccC-Ccccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCCCC
Confidence 34566665432 345799999999999998877531 11111 2334455554333332 23222111000000
Q ss_pred ccHHHHHHHHHHhcCCceEEEEecCCCCCCccChh
Q 036619 274 NEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQ 308 (352)
Q Consensus 274 ~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~ 308 (352)
. ..--.+|+.++.+||+--...+.|.
T Consensus 93 ~---------~gP~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 93 V---------YGPPGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp E---------EEEESSSEEEEEEETTT-S---TTS
T ss_pred C---------CCCCCCcEEEEEecccCCCCCCCCC
Confidence 0 0001478999999999655444444
No 266
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0066 Score=51.78 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.+|+|.|.+|+||||+|+.++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999974
No 267
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0099 Score=57.60 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=60.3
Q ss_pred CccccccchHHHHHHHHcCccc------cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESS------EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIR 257 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (352)
.++=|.+..+.+|.+++..-.. -+-..++=+.++|++|.|||.||+.+.+.- . +-++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~-----vPf~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--G-----VPFLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--C-----CceEeecch-----
Confidence 4567888888887776643211 012335667799999999999999999852 2 223333332
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCC
Q 036619 258 IAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWD 301 (352)
Q Consensus 258 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 301 (352)
+|+..+.+ .+.+.+.+.+.+.-..-.++++||++.-
T Consensus 258 ---eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 23332222 2233344444455567899999999954
No 268
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.53 E-value=0.034 Score=47.76 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|.|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999998764
No 269
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.53 E-value=0.019 Score=50.28 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=23.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNND 235 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (352)
.++.+|.++||+|+||||..+.++.+-
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 457788899999999999999999863
No 270
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.53 E-value=0.026 Score=49.08 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=63.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC------------------
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSA------------------ 270 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------------ 270 (352)
+.-.++.|.|.+|+|||||+..+.... .+ .-...+|++.... ...+... +++++...
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~ 92 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKE 92 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccc
Confidence 346789999999999999998766432 22 3456788876443 3333322 22222110
Q ss_pred ------CCcccHHHHHHHHHHhcCC---ceEEEEecCCCCC---CccChhHHHHhhcc--CCCCcEEEEecCC
Q 036619 271 ------SGLNEFQSLMSRIQSSIKG---KKNFLVLDDVWDG---DYNKWQPFFRCLKN--GLHGSKILVTTRN 329 (352)
Q Consensus 271 ------~~~~~~~~~~~~l~~~l~~---kr~LlVlDdvw~~---~~~~~~~l~~~l~~--~~~gs~IivTTR~ 329 (352)
....+.+++...+++.++. +.-++|+|.+..- ....-..+...|.. ...|..+|+|+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~ 165 (229)
T TIGR03881 93 KEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQY 165 (229)
T ss_pred cccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 0112456666666666543 3458899997432 11111111111211 2348889999874
No 271
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.52 E-value=0.069 Score=46.81 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=63.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC--------------------
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS-------------------- 269 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-------------------- 269 (352)
.-.++.|.|.+|+|||+++..+..+. ..++=..++|++... +...+...++.....-
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~-~~~~g~~vly~s~E~--~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENI-AKKQGKPVLFFSLEM--SKEQLLQRLLASESGISLSKLRTGSLSDEDWERLAE 88 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhCCCceEEEeCCC--CHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHH
Confidence 34688899999999999998776543 233223567776544 2333333332211100
Q ss_pred -------------CCCcccHHHHHHHHHHhcC-CceEEEEecCCCCCCcc-----Chh---HHHHhhcc--CCCCcEEEE
Q 036619 270 -------------ASGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWDGDYN-----KWQ---PFFRCLKN--GLHGSKILV 325 (352)
Q Consensus 270 -------------~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~~~~-----~~~---~l~~~l~~--~~~gs~Iiv 325 (352)
.....+.+.+...++.... .+.=+||+|.+...... .-. .+...|.. ...|+-||+
T Consensus 89 ~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~ 168 (242)
T cd00984 89 AIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIA 168 (242)
T ss_pred HHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 0112345666666665543 35569999998532111 111 22222321 135788888
Q ss_pred ecCC
Q 036619 326 TTRN 329 (352)
Q Consensus 326 TTR~ 329 (352)
|+..
T Consensus 169 ~~q~ 172 (242)
T cd00984 169 LSQL 172 (242)
T ss_pred eccc
Confidence 8853
No 272
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.51 E-value=0.0069 Score=53.76 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHH-HhchhcCChHHHHHHHHHHHhhhcchHHHH
Q 036619 4 AIVSSLLDQLNSIAQDQVKGKWRLVTGVEQEVGKLTTNLQAIQAVLEDA-EQRQMKQDKAVTFWLDQLIDASYDMEDVLE 82 (352)
Q Consensus 4 ~~vs~~~~kl~~~l~~~~~~e~~~~~~v~~~~~~L~~~L~~i~~~l~~a-e~~~~~~~~~~~~Wl~~lr~~ayd~eD~lD 82 (352)
+.|.+++++|-.+.+.+ ...+.-++.+++-++.+|+.+|.||+.. +..... -+....+..++-..||++|+++|
T Consensus 296 GyVdFlL~NLkdfq~ry----sdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nk-h~~~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRY----SDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNK-HDTNEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred cHHHHHHhhHHHHhccc----cchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchh-hhhhhhHHHHHHHHHhheeeeee
Confidence 46778888888875443 2346668899999999999999999986 443444 33489999999999999999999
Q ss_pred HHH
Q 036619 83 EWI 85 (352)
Q Consensus 83 ~~~ 85 (352)
-+.
T Consensus 371 aCi 373 (402)
T PF12061_consen 371 ACI 373 (402)
T ss_pred hhh
Confidence 865
No 273
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.51 E-value=0.031 Score=50.52 Aligned_cols=143 Identities=21% Similarity=0.222 Sum_probs=75.8
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh-hhhhccCCeEEEEEeCCCCCH-HHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN-DEVKRNFEKVIWVCVSDTFDQ-IRIAKA 261 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~F~~~~wv~vs~~~~~-~~~~~~ 261 (352)
..++|-.++..++-.++....-. .....+.|+|+.|.|||+|...+..+ .++.++| +-|......-. .-.+..
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHH
Confidence 45889899998888888644322 22345679999999999999877765 1223333 33334333322 223445
Q ss_pred HHHHhCCC----CCCcccHHHHHHHHHHhcC------CceEEEEecCCCCCCccChhH-HHHhhc----cCCCCcEEEEe
Q 036619 262 IIEGLGKS----ASGLNEFQSLMSRIQSSIK------GKKNFLVLDDVWDGDYNKWQP-FFRCLK----NGLHGSKILVT 326 (352)
Q Consensus 262 i~~~l~~~----~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdvw~~~~~~~~~-l~~~l~----~~~~gs~IivT 326 (352)
|.+++..+ .....+..+....|...|+ +-+.++|+|.+.-.-...-.. +...|. ...|=|-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 55554332 1111222222333444442 235788888764321122222 222332 23445667788
Q ss_pred cCChH
Q 036619 327 TRNES 331 (352)
Q Consensus 327 TR~~~ 331 (352)
||-..
T Consensus 179 trld~ 183 (408)
T KOG2228|consen 179 TRLDI 183 (408)
T ss_pred ccccH
Confidence 88653
No 274
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.0035 Score=50.48 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..-|.|.|++|+|||||++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 456889999999999999999974
No 275
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.50 E-value=0.032 Score=46.34 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999999975
No 276
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.49 E-value=0.023 Score=50.90 Aligned_cols=40 Identities=33% Similarity=0.367 Sum_probs=27.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeC
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 250 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 250 (352)
...+++.++|++|+||||++.++.... ...-..++++...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCC
Confidence 346899999999999999998887643 2222345555443
No 277
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.49 E-value=0.0058 Score=56.28 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=24.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+..+.|||++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 55889999999999999999999985
No 278
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.49 E-value=0.026 Score=53.48 Aligned_cols=25 Identities=40% Similarity=0.395 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+.+|.++|..|+||||++..+...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999877653
No 279
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.49 E-value=0.048 Score=48.73 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=65.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC---------------------
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS--------------------- 269 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~--------------------- 269 (352)
-.++.|.|.+|+|||||+..+..+. ...+=..++|++...+ ...+...+...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEEP--VVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFD 106 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEcccC--HHHHHHHHHHHHhCCCcccCCccccccHHHHHHHHH
Confidence 4578899999999999998876642 2332346888877553 333333333221110
Q ss_pred ------------CCCcccHHHHHHHHHHhcC-CceEEEEecCCCCCCc------cCh---hHHHHhhcc--CCCCcEEEE
Q 036619 270 ------------ASGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWDGDY------NKW---QPFFRCLKN--GLHGSKILV 325 (352)
Q Consensus 270 ------------~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~~~------~~~---~~l~~~l~~--~~~gs~Iiv 325 (352)
.....+.+.+...++.... .+.-+||+|.+..... +.. ..+...|.. ...++.|++
T Consensus 107 ~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll 186 (271)
T cd01122 107 EFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITL 186 (271)
T ss_pred HhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 0011245666677766553 3455899998643211 111 222233332 356888999
Q ss_pred ecCCh
Q 036619 326 TTRNE 330 (352)
Q Consensus 326 TTR~~ 330 (352)
|+...
T Consensus 187 ~sq~~ 191 (271)
T cd01122 187 VSHLR 191 (271)
T ss_pred Eeccc
Confidence 98543
No 280
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.49 E-value=0.019 Score=55.26 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=27.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEe
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 249 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 249 (352)
..|++++|+.|+||||++.++......+.....+..+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~ 294 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT 294 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 479999999999999999988875433332224555554
No 281
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.47 E-value=0.0037 Score=54.43 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|+|++|+||||+|+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999874
No 282
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.012 Score=49.14 Aligned_cols=118 Identities=18% Similarity=0.170 Sum_probs=60.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEE---eCCCC-CHHHHHHHHHHHhC---CCCC---C--------
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC---VSDTF-DQIRIAKAIIEGLG---KSAS---G-------- 272 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~-~~~~~~~~i~~~l~---~~~~---~-------- 272 (352)
-.+++|+|..|.|||||++.+.... ......+.+. ++... +... ..+.+. .... .
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~----~~~~i~~~~q~~~~~~~~t~~~~l~ 98 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPP----LRRRIGMVFQDFALFPHLTVLENIA 98 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHH----HhhcEEEEecCCccCCCCCHHHhee
Confidence 4689999999999999999998532 2222333321 11100 0011 111111 0000 0
Q ss_pred --cccHHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC--CCCcEEEEecCChHHHHH
Q 036619 273 --LNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG--LHGSKILVTTRNESVARM 335 (352)
Q Consensus 273 --~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~IivTTR~~~va~~ 335 (352)
.+.-+...-.+...+..+.=++++|+--.. |......+...+... ..|..||++|.+.+....
T Consensus 99 ~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 99 LGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred ecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 111122223344555667778889987442 333444555555432 125678888888766553
No 283
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.47 E-value=0.038 Score=47.77 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=31.7
Q ss_pred HHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHH
Q 036619 283 IQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARM 335 (352)
Q Consensus 283 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 335 (352)
|...|-.+.-+++||+.-.. |......+...+.....+..||++|.+......
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 34444556668889988553 333445555556543335568888887765543
No 284
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.46 E-value=0.031 Score=47.86 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=40.9
Q ss_pred HHHhcCCceEEEEecCCCCC-CccChhHHHHhhcc-CCCCcEEEEecCChHHHHHhCCCCeeeCCCCCCCc
Q 036619 283 IQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKN-GLHGSKILVTTRNESVARMMGSTDIISIEQLAEEE 351 (352)
Q Consensus 283 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~~l~~L~~~e 351 (352)
|...+..+.-+++||+--.. |......+...+.. ...|..||++|.+...... ..++.++....+|
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~~~~ 205 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFAAED 205 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCccCCC
Confidence 44445556788999987442 33344555555543 2346679999988765543 6677777665544
No 285
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.46 E-value=0.034 Score=48.05 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=32.5
Q ss_pred HHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHH
Q 036619 283 IQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARM 335 (352)
Q Consensus 283 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 335 (352)
|...+-.+.-+|+||..-.. |......+...+.....+..||++|.+.+.+..
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 197 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEA 197 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 44445567788999997543 333444555555432234568889988776644
No 286
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.46 E-value=0.014 Score=53.19 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=52.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHHHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSLMSRI 283 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 283 (352)
+.-+++-|+|+.|+||||||-.+... ....-..++||.....++... ++.++.... .....++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 44579999999999999999888764 334456799999988877643 344443311 122344445555
Q ss_pred HHhcC-CceEEEEecCCCC
Q 036619 284 QSSIK-GKKNFLVLDDVWD 301 (352)
Q Consensus 284 ~~~l~-~kr~LlVlDdvw~ 301 (352)
.+.++ +.--++|+|.|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 55554 3445999999843
No 287
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.021 Score=57.74 Aligned_cols=87 Identities=18% Similarity=0.263 Sum_probs=47.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFD--QIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (352)
..++.++|+.|+||||++.++............+..++.. .+. ....++...+.++.......+..++...+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 4799999999999999998888653222222345555433 233 3444555555555433222334444333332 23
Q ss_pred CceEEEEecCCC
Q 036619 289 GKKNFLVLDDVW 300 (352)
Q Consensus 289 ~kr~LlVlDdvw 300 (352)
++ =+|++|=..
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 33 255556554
No 288
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.009 Score=49.85 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|+|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999986
No 289
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.45 E-value=0.018 Score=54.73 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=33.5
Q ss_pred HHHHHhcCCceEEEEecCCCCCCccC-hhHHHHhhcc-CCCCcEEEEecCChHHHHH
Q 036619 281 SRIQSSIKGKKNFLVLDDVWDGDYNK-WQPFFRCLKN-GLHGSKILVTTRNESVARM 335 (352)
Q Consensus 281 ~~l~~~l~~kr~LlVlDdvw~~~~~~-~~~l~~~l~~-~~~gs~IivTTR~~~va~~ 335 (352)
--|.+.|-+..+|+|||.--..-++. =..+..++.. ...|+.+|+.|..+.+...
T Consensus 481 IaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~ 537 (580)
T COG4618 481 IALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537 (580)
T ss_pred HHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh
Confidence 34667788999999999864432222 2234444442 2456667777777766543
No 290
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.45 E-value=0.033 Score=47.17 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=60.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEE---------------EeCCCCC---HHHHHHHHHHHhCCCCCC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV---------------CVSDTFD---QIRIAKAIIEGLGKSASG 272 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv---------------~vs~~~~---~~~~~~~i~~~l~~~~~~ 272 (352)
-.+++|.|+.|.|||||.+.+..-.. .......+++ .+.+... ...+...+.-.... ..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--~~ 111 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--RG 111 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh--cc
Confidence 46899999999999999999986320 0111111111 1122211 11222222211000 01
Q ss_pred cccHHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChH
Q 036619 273 LNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNES 331 (352)
Q Consensus 273 ~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~ 331 (352)
.+.-+...-.|...|-.+.-+++||+.-.. |......+...+... ..|..||++|.+..
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 222222223344555556678889987543 333455555555432 23677888888864
No 291
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.44 E-value=0.0091 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|+|+.|.|||||.+.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 78999999999999999988753
No 292
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.43 E-value=0.0067 Score=48.53 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=28.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 251 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 251 (352)
++|.|+|..|+|||||++.+.+. -.+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~-l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE-LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH-HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HhHcCCceEEEEEccC
Confidence 47999999999999999999985 3345666666776665
No 293
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.43 E-value=0.014 Score=59.27 Aligned_cols=85 Identities=21% Similarity=0.213 Sum_probs=57.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHHHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSLMSRI 283 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 283 (352)
+.-+++-|.|.+|+|||||+.+++... ...-..++|+.....++.. .+++++.... .....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 456888899999999999997665432 2233568999888877743 5666665422 122345556666
Q ss_pred HHhcC-CceEEEEecCCC
Q 036619 284 QSSIK-GKKNFLVLDDVW 300 (352)
Q Consensus 284 ~~~l~-~kr~LlVlDdvw 300 (352)
...++ ++--|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 66664 456699999985
No 294
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.018 Score=56.84 Aligned_cols=73 Identities=26% Similarity=0.202 Sum_probs=45.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhc
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--DQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSI 287 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 287 (352)
...-|.|.|+.|+|||+||+.+++... +++.-.+..++++.-- ..+++.. .+...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk-----------------~l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQK-----------------FLNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHH-----------------HHHHHHHHHH
Confidence 356788999999999999999998644 4444344455554321 1111111 1122333455
Q ss_pred CCceEEEEecCCC
Q 036619 288 KGKKNFLVLDDVW 300 (352)
Q Consensus 288 ~~kr~LlVlDdvw 300 (352)
....-+|||||+.
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 6778899999984
No 295
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.41 E-value=0.049 Score=44.98 Aligned_cols=119 Identities=12% Similarity=0.044 Sum_probs=66.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeE--EEEEeCCCCCHHHHHHHHHHHh---CCC----CCCc-cc---HH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKV--IWVCVSDTFDQIRIAKAIIEGL---GKS----ASGL-NE---FQ 277 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~--~wv~vs~~~~~~~~~~~i~~~l---~~~----~~~~-~~---~~ 277 (352)
...|-|++..|.||||+|--+.-. .....+.+. -|+..........++..+.-.+ +.. ..+. .+ ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 357778888999999999665543 223333221 1333332233344444321000 110 0010 11 22
Q ss_pred HHHHHHHHhcCCceE-EEEecCCCC---CCccChhHHHHhhccCCCCcEEEEecCCh
Q 036619 278 SLMSRIQSSIKGKKN-FLVLDDVWD---GDYNKWQPFFRCLKNGLHGSKILVTTRNE 330 (352)
Q Consensus 278 ~~~~~l~~~l~~kr~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (352)
......++.+...+| |||||.+-. ...-..+.+...+...+.+.-||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 334455566655555 999999832 12235667888887777788899999986
No 296
>PRK06762 hypothetical protein; Provisional
Probab=96.40 E-value=0.0029 Score=52.09 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+.+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 297
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.012 Score=47.94 Aligned_cols=117 Identities=19% Similarity=0.244 Sum_probs=63.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCC
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--DQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKG 289 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (352)
.+++|+|..|.|||||.+.+.... ......+++....-. ..... ...+.-... .+.-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q-lS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ-LSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEee-CCHHHHHHHHHHHHHhc
Confidence 689999999999999999998742 233444444322111 11111 111111000 12222222334455555
Q ss_pred ceEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChHHHHHh
Q 036619 290 KKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNESVARMM 336 (352)
Q Consensus 290 kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~va~~~ 336 (352)
..-++++|+.-.. |......+...+... ..+..+|++|.+.+....+
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 6788899998543 223344455554421 2256789999887766653
No 298
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.042 Score=47.75 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=33.5
Q ss_pred HHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHH
Q 036619 282 RIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARM 335 (352)
Q Consensus 282 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 335 (352)
.|...|-.+.-+++||+--.. |......+...+..-..|..||++|.+......
T Consensus 149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 344455666778999987543 333444555555433346678888888776653
No 299
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.38 E-value=0.031 Score=49.46 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 300
>PRK04328 hypothetical protein; Provisional
Probab=96.36 E-value=0.016 Score=51.29 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=63.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC----------------C--
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS----------------A-- 270 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~----------------~-- 270 (352)
+.-+++.|.|.+|+|||+|+.++... ..+. -..++|++..... ..+.+. +++++.. .
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~-~~~~-ge~~lyis~ee~~--~~i~~~-~~~~g~d~~~~~~~~~l~iid~~~~~ 95 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWN-GLQM-GEPGVYVALEEHP--VQVRRN-MRQFGWDVRKYEEEGKFAIVDAFTGG 95 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH-HHhc-CCcEEEEEeeCCH--HHHHHH-HHHcCCCHHHHhhcCCEEEEeccccc
Confidence 34688999999999999999765543 2222 4568888876643 333332 2222211 0
Q ss_pred ------------CCcccHHHHHHHHHHhcCC-ceEEEEecCCCCC---CccCh----hHHHHhhccCCCCcEEEEecCC
Q 036619 271 ------------SGLNEFQSLMSRIQSSIKG-KKNFLVLDDVWDG---DYNKW----QPFFRCLKNGLHGSKILVTTRN 329 (352)
Q Consensus 271 ------------~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~---~~~~~----~~l~~~l~~~~~gs~IivTTR~ 329 (352)
....+.+.+...+.+.++. +.-++|+|.+-.. +.... ..|...+. ..|+.+|+|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk--~~g~t~llt~e~ 172 (249)
T PRK04328 96 IGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLS--GLGCTAIFVSQV 172 (249)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHHH--hCCCEEEEEECc
Confidence 0123455666666666643 3447999998321 11101 11222232 447788888654
No 301
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.36 E-value=0.016 Score=51.63 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=30.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCC
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 252 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 252 (352)
+.-+++.|.|.+|+|||+|+.++.... .+. =..+++++...+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~-a~~-Ge~vlyis~Ee~ 75 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ-ASR-GNPVLFVTVESP 75 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH-HhC-CCcEEEEEecCC
Confidence 446889999999999999997765432 222 346788887643
No 302
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.36 E-value=0.0041 Score=56.79 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=43.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
..++|.++.+++|++.|.....+.+..-+|+-++|+.|.||||||+.+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999876655556789999999999999999988876
No 303
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.025 Score=47.83 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999985
No 304
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.35 E-value=0.003 Score=43.81 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
++.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 305
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.35 E-value=0.0087 Score=55.72 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=59.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhh----hccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEV----KRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQ 284 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 284 (352)
..++=+-|||..|.|||.|.-.+|+.-.+ +-|| ...+.++-+.+......... ...+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF--------------h~Fm~~vh~~l~~~~~~~~~----l~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF--------------HEFMLDVHSRLHQLRGQDDP----LPQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccc--------------cHHHHHHHHHHHHHhCCCcc----HHHHH
Confidence 34677889999999999999999986433 2233 23333333333221111111 23344
Q ss_pred HhcCCceEEEEecCCCCCCccChhHHHHhhcc-CCCCcEEEEecCCh
Q 036619 285 SSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN-GLHGSKILVTTRNE 330 (352)
Q Consensus 285 ~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~IivTTR~~ 330 (352)
+.+.++..||.||...-.|..+--.|...|.. ...|. |||+|.|.
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 55566777999999866544332233333332 13466 66666653
No 306
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.35 E-value=0.027 Score=47.96 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=61.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhh--hh-hcc--C--------------Ce-EEEEEeCCCCCH--HHHHHHHHHHhCC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNND--EV-KRN--F--------------EK-VIWVCVSDTFDQ--IRIAKAIIEGLGK 268 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~--~~-~~~--F--------------~~-~~wv~vs~~~~~--~~~~~~i~~~l~~ 268 (352)
-.+++|+|..|.|||||.+.+.... .. ... | .. +.+ +.+.... .....+++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~--v~q~~~~~~~~~~~~~l~~~-- 101 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL--AFQYPPEIPGVKNADFLRYV-- 101 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE--eecChhhccCccHHHHHhhc--
Confidence 4689999999999999999988741 10 000 0 00 111 1221110 00111111111
Q ss_pred CCCCcccHHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChHHHHH
Q 036619 269 SASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNESVARM 335 (352)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~va~~ 335 (352)
....+..+...-.|...+-...-++++|+.-.. |......+...+... ..|..||++|.+...+..
T Consensus 102 -~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 102 -NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 011222222233345555666778899987432 333344555555432 236678889988876653
No 307
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.34 E-value=0.0099 Score=50.74 Aligned_cols=121 Identities=13% Similarity=0.174 Sum_probs=57.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---CCcccHHHHHHHHHHhc-
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSA---SGLNEFQSLMSRIQSSI- 287 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~l- 287 (352)
.++.|+|+.|.|||||.+.+....-.. +... |+.... ... ....++...+.... ........-...+...+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~-~~g~--~~~~~~-~~i-~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~ 104 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLA-QIGC--FVPAES-ASI-PLVDRIFTRIGAEDSISDGRSTFMAELLELKEILS 104 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHH-HcCC--Cccccc-ccc-CCcCEEEEEecCcccccCCceeHHHHHHHHHHHHH
Confidence 689999999999999999998432111 1111 111100 000 00111111111110 01111111111222222
Q ss_pred -CCceEEEEecCCCCCCccCh-hHHHHh-hcc-CCCCcEEEEecCChHHHHHhC
Q 036619 288 -KGKKNFLVLDDVWDGDYNKW-QPFFRC-LKN-GLHGSKILVTTRNESVARMMG 337 (352)
Q Consensus 288 -~~kr~LlVlDdvw~~~~~~~-~~l~~~-l~~-~~~gs~IivTTR~~~va~~~~ 337 (352)
...+-++++|..-..-.... ..+... +.. ...++.||++|.+.+++..+.
T Consensus 105 ~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 105 LATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPE 158 (202)
T ss_pred hccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhh
Confidence 35788999999855321111 122211 211 123677999999998887654
No 308
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.33 E-value=0.032 Score=52.19 Aligned_cols=84 Identities=24% Similarity=0.317 Sum_probs=50.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHHHHHHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSLMSRIQ 284 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (352)
.-.++.|.|.+|+|||||+.++.... ...-..++|++.... ...+ ..-+..++.... ...+++.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 35789999999999999998887642 223346778876543 2332 222344443222 1233455444443
Q ss_pred HhcCCceEEEEecCCCC
Q 036619 285 SSIKGKKNFLVLDDVWD 301 (352)
Q Consensus 285 ~~l~~kr~LlVlDdvw~ 301 (352)
..+.-+||+|.+..
T Consensus 156 ---~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 ---ELKPDLVIIDSIQT 169 (372)
T ss_pred ---hcCCcEEEEcchHH
Confidence 23566899999854
No 309
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.33 E-value=0.047 Score=44.10 Aligned_cols=22 Identities=45% Similarity=0.622 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
++.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 310
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.015 Score=50.01 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=32.0
Q ss_pred HHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHH
Q 036619 282 RIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARM 335 (352)
Q Consensus 282 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 335 (352)
.+...+..++-+++||+--.. |...-..+...+.....+..||++|.+.+....
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 344555667778899987442 223344455555432224568888888776543
No 311
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.084 Score=46.03 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=32.7
Q ss_pred HHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHH
Q 036619 283 IQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARM 335 (352)
Q Consensus 283 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 335 (352)
|...|-.+.-+++||+.-.. |......+...+.....|..||++|.+......
T Consensus 149 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 149 IARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 44445556668889987443 333455566666543346678888888766654
No 312
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.31 E-value=0.0088 Score=50.02 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 313
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.30 E-value=0.018 Score=51.23 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=67.7
Q ss_pred CccccccchHHHHHHHHcCc-cccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhh---ccCCeEEEEEeCCCCCHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCE-SSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK---RNFEKVIWVCVSDTFDQIRIA 259 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~-~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~ 259 (352)
..++|..-.++.++..+..- .+..+.++-+++.+|.+|+||.-.++.+.++-.-. ..| ...++..-+
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~-V~~fvat~h-------- 152 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPF-VHHFVATLH-------- 152 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchh-HHHhhhhcc--------
Confidence 35778776666666666431 11124678999999999999999999888762111 111 000000000
Q ss_pred HHHHHHhCCCCCCcccH----HHHHHHHHHhc-CCceEEEEecCCCCCCccChhHHHHhhc
Q 036619 260 KAIIEGLGKSASGLNEF----QSLMSRIQSSI-KGKKNFLVLDDVWDGDYNKWQPFFRCLK 315 (352)
Q Consensus 260 ~~i~~~l~~~~~~~~~~----~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~ 315 (352)
-+....+ +++...++..+ .-+|-|+|||++......-.+.|.+.+.
T Consensus 153 ----------FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 153 ----------FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred ----------CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 1111122 34444444444 4689999999998876666777777765
No 314
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.28 E-value=0.015 Score=53.90 Aligned_cols=112 Identities=14% Similarity=0.222 Sum_probs=62.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
-..+.|.|+.|+||||+.+.+.+. +..+....++. +.++... ........+.....+ .+.......++..|...
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~~~~i~q~evg-~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNKRSLINQREVG-LDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCccceEEccccC-CCCcCHHHHHHHhhccC
Confidence 367999999999999999988763 33344444443 3332111 000000000000011 11123456677788888
Q ss_pred eEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHH
Q 036619 291 KNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVA 333 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va 333 (352)
.=.|++|.+.+. +.+..... ....|..|+.|+...+.+
T Consensus 196 pd~i~vgEird~--~~~~~~l~---aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 196 PDVILIGEMRDL--ETVELALT---AAETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCEEEEeCCCCH--HHHHHHHH---HHHcCCcEEEEEcCCCHH
Confidence 889999999543 44443333 233466677777765544
No 315
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.054 Score=47.33 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=34.5
Q ss_pred HHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHH
Q 036619 282 RIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARM 335 (352)
Q Consensus 282 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 335 (352)
.|...|-.++-+|+||+.-.. |......+...+.....|..||++|.+......
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 345556667789999998553 333445566666543236678888888776653
No 316
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.025 Score=48.54 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=32.5
Q ss_pred HHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC--CCCcEEEEecCChHHHHH
Q 036619 283 IQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG--LHGSKILVTTRNESVARM 335 (352)
Q Consensus 283 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~IivTTR~~~va~~ 335 (352)
+...+-...-+++||+.-.. |......+...+..- ..|..||++|.+.+....
T Consensus 139 ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 194 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 34444556678889987443 334455566666532 236678888888775543
No 317
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.26 E-value=0.011 Score=50.53 Aligned_cols=44 Identities=20% Similarity=0.180 Sum_probs=34.3
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.++||-++.++++.-.-.+ .+.+-+.|.||+|+||||-+..+.+
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 4689988888877665544 3467788999999999998877765
No 318
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.011 Score=47.71 Aligned_cols=44 Identities=32% Similarity=0.378 Sum_probs=32.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS 269 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 269 (352)
+|.|-|++|+||||+|+.+.++.... | .+.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCC
Confidence 68999999999999999999863322 1 23346788888877654
No 319
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.25 E-value=0.061 Score=46.58 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=32.4
Q ss_pred HHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChHHHHH
Q 036619 283 IQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNESVARM 335 (352)
Q Consensus 283 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~va~~ 335 (352)
+...+-..+-+++||+.-.. |....+.+...+... ..|..||++|.+...+..
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~ 189 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQ 189 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 44445556678889987443 333444555555432 236679999998876643
No 320
>PRK03839 putative kinase; Provisional
Probab=96.25 E-value=0.0037 Score=52.31 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|+|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999985
No 321
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.25 E-value=0.0037 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|+|++|+||||+++.+...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999864
No 322
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.25 E-value=0.063 Score=52.79 Aligned_cols=132 Identities=22% Similarity=0.318 Sum_probs=74.1
Q ss_pred HHHHHHHHcCccccCCCCeEEEEEEecCCCcHHH-HHHHHHhhhhhhccCCeEEEEEeCCCCCHH--HHHHHHHHHhCCC
Q 036619 193 KSELFSKLLCESSEQQNGLQVISLVGLGGIGKTT-LAQLAYNNDEVKRNFEKVIWVCVSDTFDQI--RIAKAIIEGLGKS 269 (352)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~ 269 (352)
.++|++.+. .-.||.|||..|+|||| |++.+|.+- |...--|.+.++-.+. .+.+.+.+..+..
T Consensus 361 R~~ll~~ir--------~n~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 361 RDQLLSVIR--------ENQVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHHHHh--------hCcEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 455565553 24689999999999987 568888752 3222245666665544 3445555555332
Q ss_pred CC----------Cc----------ccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhc---cCCCCcEEEEe
Q 036619 270 AS----------GL----------NEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLK---NGLHGSKILVT 326 (352)
Q Consensus 270 ~~----------~~----------~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~---~~~~gs~IivT 326 (352)
.. +. ++.--|.+.|.+..-+|=-.||+|..++.. -.-+.+...|. .....-|+|||
T Consensus 428 lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKliVt 506 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLIVT 506 (1042)
T ss_pred cccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEEEe
Confidence 10 00 122223344444444455589999997642 12233333332 22447799999
Q ss_pred cCCh---HHHHHhCC
Q 036619 327 TRNE---SVARMMGS 338 (352)
Q Consensus 327 TR~~---~va~~~~~ 338 (352)
|-.- ..+..+|.
T Consensus 507 SATm~a~kf~nfFgn 521 (1042)
T KOG0924|consen 507 SATMDAQKFSNFFGN 521 (1042)
T ss_pred eccccHHHHHHHhCC
Confidence 8764 45666664
No 323
>PRK06547 hypothetical protein; Provisional
Probab=96.24 E-value=0.0046 Score=51.34 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....+|.|.|++|+||||||+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 324
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.015 Score=55.64 Aligned_cols=52 Identities=27% Similarity=0.202 Sum_probs=37.9
Q ss_pred Ccccccc---chHHHHHHHHcCccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhhh
Q 036619 184 GEVCGRV---DEKSELFSKLLCESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNND 235 (352)
Q Consensus 184 ~~~~gr~---~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (352)
.++-|-+ .|+++++++|.++.- -+.+=++=|.++|++|.|||-||+.|.-..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3455655 567788888876542 123346778899999999999999999753
No 325
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.22 E-value=0.045 Score=48.27 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=64.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhh-c--cCC--eEEEEEeC----CCCCHHHHH--------------HHHHHHhC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVK-R--NFE--KVIWVCVS----DTFDQIRIA--------------KAIIEGLG 267 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~--~~~wv~vs----~~~~~~~~~--------------~~i~~~l~ 267 (352)
-.+++|+|..|+|||||.+.+....... . .|+ .+.++.-. ...++.+.+ .++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 4689999999999999999998742211 1 011 12222111 011222222 12233332
Q ss_pred CCC------CCcccHHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC--CCCcEEEEecCChHHHHHh
Q 036619 268 KSA------SGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG--LHGSKILVTTRNESVARMM 336 (352)
Q Consensus 268 ~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~IivTTR~~~va~~~ 336 (352)
... ...+.-+.-.-.|...|..+.=+++||.--.. |...-..+...+... ..|..||++|.+...+..+
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 210 01111222223345566667788999987443 222333444444432 2366799999887766543
No 326
>PF14516 AAA_35: AAA-like domain
Probab=96.22 E-value=0.08 Score=48.91 Aligned_cols=109 Identities=13% Similarity=0.131 Sum_probs=67.6
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCC-----CCHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-----FDQIRI 258 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~ 258 (352)
+..+.|...-+++.+.|..+ -..+.|.|+..+|||+|...+.+..+- ..+ .++++++..- .+...+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHH
Confidence 44667876667777777543 357889999999999999998875332 244 4557776542 245555
Q ss_pred HHHHHH----HhCCCCC-------CcccHHHHHHHHHHhc---CCceEEEEecCCCC
Q 036619 259 AKAIIE----GLGKSAS-------GLNEFQSLMSRIQSSI---KGKKNFLVLDDVWD 301 (352)
Q Consensus 259 ~~~i~~----~l~~~~~-------~~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~ 301 (352)
++.++. +++.... .......+...+.+++ .+++.+|+||++..
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~ 138 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDR 138 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhh
Confidence 555544 4443221 0112233344444433 26899999999965
No 327
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.05 Score=55.84 Aligned_cols=123 Identities=15% Similarity=0.226 Sum_probs=74.3
Q ss_pred CccccccchHHHHHHHHcCccccCC--CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQ--NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKA 261 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 261 (352)
..++|.++.+..|-+.+.....+-. .....+.+.|+.|+|||-||+.+..- +-+..+.-+-+..|. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh-
Confidence 3567777777777777754432211 25677889999999999999988863 333333444444443 222
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhcCCceE-EEEecCCCCCCccChhHHHHhhccC
Q 036619 262 IIEGLGKSASGLNEFQSLMSRIQSSIKGKKN-FLVLDDVWDGDYNKWQPFFRCLKNG 317 (352)
Q Consensus 262 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~ 317 (352)
+.+.++.+ ++-- ..+-...|-+.++.+.| .|.||||...+......+...+..+
T Consensus 633 vskligsp-~gyv-G~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIGSP-PGYV-GKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccCCC-cccc-cchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 22333332 2111 11123456667777776 7889999887766777777777654
No 328
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.22 E-value=0.012 Score=51.36 Aligned_cols=63 Identities=25% Similarity=0.275 Sum_probs=35.7
Q ss_pred hHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHH
Q 036619 192 EKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRI 258 (352)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 258 (352)
+...++..|.... .+..+|+|.|++|+|||||...+.....-+.+=-.++=|.-|.+++--.+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 4556777776543 45689999999999999999877765332222122333334445544333
No 329
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.22 E-value=0.069 Score=46.11 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=31.3
Q ss_pred HHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHH
Q 036619 284 QSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVAR 334 (352)
Q Consensus 284 ~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 334 (352)
...+-.++-+|+||+.-.. |......+...+.....+..||++|.+.+...
T Consensus 152 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 203 (220)
T cd03245 152 ARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD 203 (220)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 3344455668999987442 33445556566654323356899998887664
No 330
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.21 E-value=0.12 Score=41.53 Aligned_cols=84 Identities=11% Similarity=0.144 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhchhcCChHHHHHHHHHHHhhhcchHHH
Q 036619 2 AHAIVSSLLDQLNSIAQDQVKGKWRLVTGVEQEVGKLTTNLQAIQAVLEDAEQRQMKQDKAVTFWLDQLIDASYDMEDVL 81 (352)
Q Consensus 2 a~~~vs~~~~kl~~~l~~~~~~e~~~~~~v~~~~~~L~~~L~~i~~~l~~ae~~~~~~~~~~~~Wl~~lr~~ayd~eD~l 81 (352)
||.+.+++++...+.|...+.+........+.-+++|...++.|..++++.+.....-+..-+.=++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 45555555555555555456666666667788899999999999999999887554323333666888999999999999
Q ss_pred HHHH
Q 036619 82 EEWI 85 (352)
Q Consensus 82 D~~~ 85 (352)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 9875
No 331
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.057 Score=48.37 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|.|||||.+.+..-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998754
No 332
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.19 E-value=0.066 Score=48.77 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 333
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.17 E-value=0.0066 Score=58.09 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=36.6
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++||++.++.+...++... -+.|.|++|+|||+||+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 458999999999998887543 4679999999999999999874
No 334
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.021 Score=51.23 Aligned_cols=79 Identities=18% Similarity=0.282 Sum_probs=48.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhh--ccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVK--RNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (352)
-++|.++|++|.|||+|.+.+++.-.++ +.|....-+.++. ..++..-... ...-...+.++|.+.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 4889999999999999999999875443 3444444444332 2222222211 11234456677777776
Q ss_pred Cce--EEEEecCC
Q 036619 289 GKK--NFLVLDDV 299 (352)
Q Consensus 289 ~kr--~LlVlDdv 299 (352)
++. .++.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 654 45677888
No 335
>PRK04040 adenylate kinase; Provisional
Probab=96.14 E-value=0.005 Score=51.93 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|+|++|+||||+++.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 336
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.13 E-value=0.041 Score=46.37 Aligned_cols=42 Identities=29% Similarity=0.403 Sum_probs=27.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccC--------CeEEEEEeCCCC
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNF--------EKVIWVCVSDTF 253 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~~ 253 (352)
.+..|+|++|+||||++..+.........| ..++|++...+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 477899999999999997777653332222 367788776653
No 337
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.13 E-value=0.034 Score=52.97 Aligned_cols=86 Identities=20% Similarity=0.168 Sum_probs=48.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC------CCCccc-----HHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS------ASGLNE-----FQSL 279 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~-----~~~~ 279 (352)
-..++|+|..|+|||||++.+.... .....+++..-...-++..+....+...... ..+... .-..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4578999999999999999888632 2233444444334445554444443332110 111111 1112
Q ss_pred HHHHHHhc--CCceEEEEecCC
Q 036619 280 MSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 280 ~~~l~~~l--~~kr~LlVlDdv 299 (352)
.-.+.+++ +++..||++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22234444 589999999998
No 338
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.13 E-value=0.0076 Score=47.55 Aligned_cols=24 Identities=42% Similarity=0.326 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.++.+.|.-|.|||||++.+...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999975
No 339
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.12 E-value=0.07 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|..|.|||||.+.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 340
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.11 E-value=0.065 Score=46.88 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=32.5
Q ss_pred HHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHH
Q 036619 283 IQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVAR 334 (352)
Q Consensus 283 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 334 (352)
|...|-.+.=+|+||+.-.. |......+...+.....|..||++|.+.+.+.
T Consensus 150 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 150 IARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 44445556668899998553 33344555555543335667888888877665
No 341
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.10 E-value=0.0023 Score=59.11 Aligned_cols=130 Identities=20% Similarity=0.237 Sum_probs=77.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHH-HHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQI-RIAKAIIEGLGKSASGLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (352)
..+.+.++|.|||||||++-.+.. +...|..-.|+.--.+++-. .+.-.....++....+ .+.....+...+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 468899999999999999988876 56678666655544444433 3333333435443222 1233455667778
Q ss_pred CceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHHHHhCCCCeeeCCCCCC
Q 036619 289 GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVARMMGSTDIISIEQLAE 349 (352)
Q Consensus 289 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~~l~~L~~ 349 (352)
++|.++|+||.-+-- ..-..+.-.+-.+.+.-.|+.|+|..-.. .......+.+|+.
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~ 143 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSL 143 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCcccc
Confidence 899999999983321 11112233344445555688888865322 2244455555554
No 342
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.10 E-value=0.063 Score=48.19 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=33.3
Q ss_pred HHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChHHHHH
Q 036619 281 SRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNESVARM 335 (352)
Q Consensus 281 ~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~va~~ 335 (352)
-.|...|-.+.=+|+||+.-.. |......+...+... ..|..||++|.+.+.+..
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~ 203 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAE 203 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3345556677789999998553 223344455555422 236678888888776543
No 343
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.09 E-value=0.024 Score=48.25 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHH
Q 036619 212 QVISLVGLGGIGKTTLAQLAY 232 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~ 232 (352)
+++.|.|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 344
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.09 E-value=0.004 Score=52.96 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+|+|.|..|+|||||++.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 345
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.08 E-value=0.068 Score=47.39 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.-.+++|+|+.|.|||||.+.++.-
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999988764
No 346
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.061 Score=48.75 Aligned_cols=120 Identities=9% Similarity=0.124 Sum_probs=72.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhh------h--ccCCeEEEEEe-CCCCCHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEV------K--RNFEKVIWVCV-SDTFDQIRIAKAIIEGLGKSASGLNEFQSLMS 281 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~------~--~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 281 (352)
..+..++|..|.||+++|..+.+.--. . .|=+-..++.. ..... .+++..
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~---------------------vd~Ir~ 76 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLS---------------------KSEFLS 76 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCC---------------------HHHHHH
Confidence 567779999999999999888764211 1 11111222211 11122 222222
Q ss_pred HHHHh---c--CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecC-ChHHHHHh-CCCCeeeCCCCCCCc
Q 036619 282 RIQSS---I--KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTR-NESVARMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 282 ~l~~~---l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR-~~~va~~~-~~~~~~~l~~L~~~e 351 (352)
.+... - .+.+-++|+|++...+....+.|...+...+.++.+|++|. .+.+-..+ +....+++.++++++
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~ 153 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQK 153 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHH
Confidence 22221 0 25778899999977766678889999988777887776554 44454443 336788888887654
No 347
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.08 E-value=0.071 Score=46.22 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=32.5
Q ss_pred HHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChHHHH
Q 036619 282 RIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNESVAR 334 (352)
Q Consensus 282 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~va~ 334 (352)
.|...|-.+.-++++|+--.. |......+...+... ..|..||++|.+.+...
T Consensus 123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~ 177 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAM 177 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 445556667788999987442 333444555555432 23667888888876443
No 348
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.07 E-value=0.054 Score=51.27 Aligned_cols=50 Identities=28% Similarity=0.239 Sum_probs=34.2
Q ss_pred CccccccchHHHHHHHHc-------C--cccc---CCCCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 184 GEVCGRVDEKSELFSKLL-------C--ESSE---QQNGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~-------~--~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
..++|.++.++.+...+. . .... -.-....+.++|++|+|||+||+.+..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 568898888887755441 1 0100 001135788999999999999999986
No 349
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.07 E-value=0.058 Score=51.92 Aligned_cols=84 Identities=23% Similarity=0.299 Sum_probs=50.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHHHHHHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSLMSRIQ 284 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (352)
.-.++.|.|.+|+|||||+.++..... ..-..++|++.... ...+.. -++.++.... ...+.+.+...+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 457899999999999999988876422 22245777776543 333322 2444543211 1234555544443
Q ss_pred HhcCCceEEEEecCCCC
Q 036619 285 SSIKGKKNFLVLDDVWD 301 (352)
Q Consensus 285 ~~l~~kr~LlVlDdvw~ 301 (352)
+ .+.-+||+|.+..
T Consensus 154 ~---~~~~lVVIDSIq~ 167 (446)
T PRK11823 154 E---EKPDLVVIDSIQT 167 (446)
T ss_pred h---hCCCEEEEechhh
Confidence 2 3556899999853
No 350
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.06 E-value=0.056 Score=50.36 Aligned_cols=59 Identities=27% Similarity=0.330 Sum_probs=32.0
Q ss_pred CeEEEEEEecCCCcHHHHH-HHHHhhhhhhccCCeEEEEEeCCC-CCHHHHHHHHHHHhCCC
Q 036619 210 GLQVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEKVIWVCVSDT-FDQIRIAKAIIEGLGKS 269 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 269 (352)
+.+++++||+.|+||||-. +....- .....=..+..|+...- .....-++.-++-++.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp 262 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP 262 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCc
Confidence 3799999999999998754 444432 21222234555654432 12333344444444443
No 351
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.06 E-value=0.025 Score=48.70 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=50.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCccc--------
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-DQIRIAKAIIEGLGKS-------ASGLNE-------- 275 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~-------- 275 (352)
.-++|+|.+|+|||+|+..+.++. .-+..+++.+.+.. .+.++.+++...-... ..+...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 467899999999999999998753 22345777776653 4555555554321111 011110
Q ss_pred -HHHHHHHHHHhcCCceEEEEecCC
Q 036619 276 -FQSLMSRIQSSIKGKKNFLVLDDV 299 (352)
Q Consensus 276 -~~~~~~~l~~~l~~kr~LlVlDdv 299 (352)
.-...+.+++ +++..|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 1122333444 799999999998
No 352
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.05 E-value=0.061 Score=47.38 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|..|.|||||.+.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999875
No 353
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.03 E-value=0.01 Score=52.71 Aligned_cols=65 Identities=25% Similarity=0.243 Sum_probs=44.1
Q ss_pred HHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHH
Q 036619 193 KSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKA 261 (352)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 261 (352)
-.+|+..|.... .+..+|+|.|.||+|||||...+-....-+.|=-.++=|.-|.+++--.++-+
T Consensus 37 a~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 37 ARELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 345666666544 56789999999999999999887765433444334455556667765555544
No 354
>PF13479 AAA_24: AAA domain
Probab=96.03 E-value=0.025 Score=48.73 Aligned_cols=20 Identities=45% Similarity=0.421 Sum_probs=17.7
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 036619 212 QVISLVGLGGIGKTTLAQLA 231 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v 231 (352)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 45779999999999999877
No 355
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.02 E-value=0.03 Score=50.04 Aligned_cols=23 Identities=39% Similarity=0.332 Sum_probs=18.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999875
No 356
>PRK00625 shikimate kinase; Provisional
Probab=96.01 E-value=0.0053 Score=50.99 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|+||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 357
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.01 E-value=0.039 Score=52.85 Aligned_cols=88 Identities=16% Similarity=0.114 Sum_probs=55.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCccc-----HH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-DQIRIAKAIIEGLGKS-------ASGLNE-----FQ 277 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~-----~~ 277 (352)
-..++|+|.+|+|||||+..+.++.. +++-+.++++-+.... .+..++..+...-... ..+... .-
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 35688999999999999988887533 2356777777776544 3455555555432111 001111 11
Q ss_pred HHHHHHHHhc---CCceEEEEecCC
Q 036619 278 SLMSRIQSSI---KGKKNFLVLDDV 299 (352)
Q Consensus 278 ~~~~~l~~~l---~~kr~LlVlDdv 299 (352)
...-.+.+++ +++..||++||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 2233455555 389999999999
No 358
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.00 E-value=0.15 Score=44.39 Aligned_cols=103 Identities=18% Similarity=0.297 Sum_probs=65.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFDQIRIAKAIIEGLGKSASGL--NEFQSLMSRIQS 285 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~ 285 (352)
.+-+++.++|.-|.|||.+.+..... .. =+.++=|.+.. ..+...+...|+..+...+... .-.++....|..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LN--EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cC--CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 34579999999999999999944432 11 12222244444 4567788888888887732211 123444555555
Q ss_pred hc-CCce-EEEEecCCCCCCccChhHHHHhhc
Q 036619 286 SI-KGKK-NFLVLDDVWDGDYNKWQPFFRCLK 315 (352)
Q Consensus 286 ~l-~~kr-~LlVlDdvw~~~~~~~~~l~~~l~ 315 (352)
.. +++| ..+++|+......+..+.++-...
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~n 156 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTN 156 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHh
Confidence 54 5777 899999998766566666554443
No 359
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.98 E-value=0.006 Score=50.44 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458889999999999999999874
No 360
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.97 E-value=0.019 Score=56.51 Aligned_cols=152 Identities=11% Similarity=0.102 Sum_probs=79.6
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..++|....+.++++.+..-.. .-.-|.|+|..|+||++||+.++... .+ .-..-+.++++.-. ...+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s-~r-~~~pfv~inca~~~--~~~~e~-- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRS-PR-GKKPFLALNCASIP--DDVVES-- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhC-CC-CCCCeEEeccccCC--HHHHHH--
Confidence 4588988888888777643321 12236699999999999999987531 11 11223445554432 122221
Q ss_pred HHhCCCCCCc-ccHHHHHHHHHHhc-CCceEEEEecCCCCCCccChhHHHHhhccCC-----------CCcEEEEecCCh
Q 036619 264 EGLGKSASGL-NEFQSLMSRIQSSI-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRNE 330 (352)
Q Consensus 264 ~~l~~~~~~~-~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTTR~~ 330 (352)
.+.+...+. ....... ..++ ....=.|+||++..........|...+..+. ...|||.||...
T Consensus 274 -elFG~~~~~~~~~~~~~---~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 -ELFGHAPGAYPNALEGK---KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred -HhcCCCCCCcCCcccCC---CChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 122211100 0000000 0011 1223457899998876556667777776531 123788877654
Q ss_pred HH--HH-------HhC--CCCeeeCCCCCC
Q 036619 331 SV--AR-------MMG--STDIISIEQLAE 349 (352)
Q Consensus 331 ~v--a~-------~~~--~~~~~~l~~L~~ 349 (352)
-. .. ... ....++|.||.+
T Consensus 350 l~~l~~~g~f~~dL~~rL~~~~i~lPpLre 379 (520)
T PRK10820 350 LVELVQKGEFREDLYYRLNVLTLNLPPLRD 379 (520)
T ss_pred HHHHHHcCCccHHHHhhcCeeEEeCCCccc
Confidence 21 11 111 135677888865
No 361
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.95 E-value=0.015 Score=50.35 Aligned_cols=121 Identities=15% Similarity=0.175 Sum_probs=60.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CcccHHHHHHHHHHh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---GLNEFQSLMSRIQSS 286 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 286 (352)
...++.|.|+.|.|||||.+.+..-. +-.+- -++|.+.. ....+...|+..++.... +.+....-...+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~-~la~~--g~~vpa~~--~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIV-LMAQI--GCFVPCDS--ADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-HHHHh--CCCcCccc--EEEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 35789999999999999998876431 11111 11222221 011122333333332211 111111111222222
Q ss_pred c--CCceEEEEecCCCC---CC-cc--ChhHHHHhhccCCCCcEEEEecCChHHHHHhC
Q 036619 287 I--KGKKNFLVLDDVWD---GD-YN--KWQPFFRCLKNGLHGSKILVTTRNESVARMMG 337 (352)
Q Consensus 287 l--~~kr~LlVlDdvw~---~~-~~--~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 337 (352)
+ -..+-|++||..-. .. .. .|..+ ..+.. ..|+.+|+||...++...+.
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~ 160 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALAD 160 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhh
Confidence 3 35678999999832 21 00 12222 33332 24788999999888776543
No 362
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.94 E-value=0.0063 Score=50.76 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37889999999999999998764
No 363
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.93 E-value=0.12 Score=43.96 Aligned_cols=63 Identities=14% Similarity=0.275 Sum_probs=37.1
Q ss_pred HHHHHHhcCCceEEEEecCCCCC-CccChhHHHH-hhcc-CCCCcEEEEecCChHHHHHhCCCCeeeC
Q 036619 280 MSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFR-CLKN-GLHGSKILVTTRNESVARMMGSTDIISI 344 (352)
Q Consensus 280 ~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~-~l~~-~~~gs~IivTTR~~~va~~~~~~~~~~l 344 (352)
.-.|...+..+.-++++|+--.. |....+.+.. .+.. ...|..||++|.+...... +.+++.|
T Consensus 135 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~--~d~i~~l 200 (204)
T cd03250 135 RISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH--ADQIVVL 200 (204)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 34455666778889999986443 2233344544 3332 2346778888888776654 3444443
No 364
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.92 E-value=0.032 Score=55.65 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=32.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhh-hccCCeEEEEEeCCCCCHHHHHHHHHH
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEV-KRNFEKVIWVCVSDTFDQIRIAKAIIE 264 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~ 264 (352)
++..|.|.+|.||||++..+...-.- ...=...+.+.....--..++.+.+..
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 57789999999999999888764211 111124555555554444555544443
No 365
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.92 E-value=0.0081 Score=49.70 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999864
No 366
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.92 E-value=0.0053 Score=51.40 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 367
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.031 Score=51.92 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=52.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHHHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSLMSRIQS 285 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 285 (352)
-.++.|-|.+|||||||.-++..+ ....- .+++|+--.. ..++ +--++.++.... ...+++.+...+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 478999999999999999888875 33222 6776665543 3222 233455554332 23445555444444
Q ss_pred hcCCceEEEEecCCCC
Q 036619 286 SIKGKKNFLVLDDVWD 301 (352)
Q Consensus 286 ~l~~kr~LlVlDdvw~ 301 (352)
.+.-|+|+|-+..
T Consensus 167 ---~~p~lvVIDSIQT 179 (456)
T COG1066 167 ---EKPDLVVIDSIQT 179 (456)
T ss_pred ---cCCCEEEEeccce
Confidence 6788999999855
No 368
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.91 E-value=0.052 Score=47.95 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (352)
|.++|++|+||||+|+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 679999999999999999874
No 369
>PHA02774 E1; Provisional
Probab=95.90 E-value=0.041 Score=53.68 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=29.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCC
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 252 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 252 (352)
++..-+.|+|++|.|||.+|-.+.+- .. -..+.||+....
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~--L~--G~vi~fvN~~s~ 471 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKF--LK--GKVISFVNSKSH 471 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHH--hC--CCEEEEEECccc
Confidence 44568889999999999999888873 21 235677775433
No 370
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.90 E-value=0.024 Score=49.10 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=61.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---Ccc----cHHHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---GLN----EFQSLMSRI 283 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~----~~~~~~~~l 283 (352)
..++.|.|+.|.||||+.+.+.-.. +..+-.+..|..-.. ...+.+|.-.++.... +.+ ++.++...+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 105 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHIL 105 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHHHH
Confidence 4678899999999999999888642 222222333321110 0111122222221111 111 122333333
Q ss_pred HHhcCCceEEEEecCCCCCCc--cCh---hHHHHhhccCCCCcEEEEecCChHHHHHh
Q 036619 284 QSSIKGKKNFLVLDDVWDGDY--NKW---QPFFRCLKNGLHGSKILVTTRNESVARMM 336 (352)
Q Consensus 284 ~~~l~~kr~LlVlDdvw~~~~--~~~---~~l~~~l~~~~~gs~IivTTR~~~va~~~ 336 (352)
+. .+++-|++||....... +.- ..+...+... .++.+|++|.+.+++...
T Consensus 106 ~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 106 SN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred Hh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 22 35789999999744211 111 1223333332 478899999999988765
No 371
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.90 E-value=0.063 Score=51.36 Aligned_cols=88 Identities=18% Similarity=0.130 Sum_probs=52.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCcccH-----H
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-DQIRIAKAIIEGLGKS-------ASGLNEF-----Q 277 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 277 (352)
-..++|+|.+|+|||||+..+..+... ++=+.++++-+.... .+..++.++...-... ..+..-. -
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 356889999999999999888765322 222456677665544 3455666655432111 0011111 1
Q ss_pred HHHHHHHHhc---CCceEEEEecCC
Q 036619 278 SLMSRIQSSI---KGKKNFLVLDDV 299 (352)
Q Consensus 278 ~~~~~l~~~l---~~kr~LlVlDdv 299 (352)
...-.+.+++ +++..||++||+
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 2223355555 789999999999
No 372
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.89 E-value=0.0065 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+++.|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999973
No 373
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.88 E-value=0.017 Score=46.83 Aligned_cols=36 Identities=39% Similarity=0.272 Sum_probs=26.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEE
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 248 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 248 (352)
..+|-|.|.+|+||||||+.+... ....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468889999999999999999984 444434455553
No 374
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.87 E-value=0.032 Score=54.60 Aligned_cols=132 Identities=18% Similarity=0.178 Sum_probs=72.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhh-hc-----cCCeEEEEEeCC-C-C---CH------------HHHHHHHHHHhC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEV-KR-----NFEKVIWVCVSD-T-F---DQ------------IRIAKAIIEGLG 267 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~-----~F~~~~wv~vs~-~-~---~~------------~~~~~~i~~~l~ 267 (352)
-..|+|+|+.|+|||||.+.+.....- .. .--.+.|+.-.. . . ++ ..-.+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 457899999999999999999653111 11 111122222111 0 0 01 222233333332
Q ss_pred CCCC-------CcccHHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHHhCCC
Q 036619 268 KSAS-------GLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARMMGST 339 (352)
Q Consensus 268 ~~~~-------~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~ 339 (352)
-... ..+.-+...-.|...+-...=+||||.--+. |.+..+.|..+|..- +|+ ||+.|.+........ .
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~va-~ 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRVA-T 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhhc-c
Confidence 2211 1122344444566667788889999987443 334556666666543 476 899999988776544 3
Q ss_pred CeeeCC
Q 036619 340 DIISIE 345 (352)
Q Consensus 340 ~~~~l~ 345 (352)
+++.+.
T Consensus 505 ~i~~~~ 510 (530)
T COG0488 505 RIWLVE 510 (530)
T ss_pred eEEEEc
Confidence 344433
No 375
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.039 Score=50.29 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=57.4
Q ss_pred CccccccchHHHHHHHHcCccc-------cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESS-------EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQI 256 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (352)
..+=|-++.+++|.+...-+-- -+-+.++=|.++|++|.|||-||+.|.++ ....| +.|..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH----
Confidence 3456777777777665422110 02234566779999999999999999995 33333 333321
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC-CceEEEEecCCCC
Q 036619 257 RIAKAIIEGLGKSASGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWD 301 (352)
Q Consensus 257 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~ 301 (352)
++.+..-+ +...++..+.+.-+ .....|++|.+..
T Consensus 220 ----ElVqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDA 255 (406)
T COG1222 220 ----ELVQKYIG------EGARLVRELFELAREKAPSIIFIDEIDA 255 (406)
T ss_pred ----HHHHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhh
Confidence 22222221 12344555555543 5688999998843
No 376
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.87 E-value=0.09 Score=48.00 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|.|||||.+.+..-
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999864
No 377
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.87 E-value=0.05 Score=51.71 Aligned_cols=85 Identities=16% Similarity=0.263 Sum_probs=49.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CCCcccHHH----
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FDQIRIAKAIIEGLGKS-------ASGLNEFQS---- 278 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 278 (352)
-..++|+|..|+|||||.+.+.+.. +.+...+..+... ..+..++.+....-... ..+..-...
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 4678999999999999999998742 3444555555543 34445555543211000 001111111
Q ss_pred -HHHHHHHhc--CCceEEEEecCC
Q 036619 279 -LMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 279 -~~~~l~~~l--~~kr~LlVlDdv 299 (352)
..-.+.+++ ++++.||++||+
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122344444 689999999999
No 378
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.84 E-value=0.014 Score=50.72 Aligned_cols=87 Identities=28% Similarity=0.360 Sum_probs=52.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC---------------CCC-
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS---------------ASG- 272 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~---------------~~~- 272 (352)
+.-+++.|.|.+|+|||+|+.++... ..++.=..++|++...+. ..+.+.+- +++.. ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 44678999999999999999665433 222212457888876543 44444432 33211 001
Q ss_pred ----cccHHHHHHHHHHhcCC-ceEEEEecCC
Q 036619 273 ----LNEFQSLMSRIQSSIKG-KKNFLVLDDV 299 (352)
Q Consensus 273 ----~~~~~~~~~~l~~~l~~-kr~LlVlDdv 299 (352)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34567777777777653 4479999987
No 379
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.84 E-value=0.12 Score=45.45 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.-.+++|+|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999999987
No 380
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=95.84 E-value=0.045 Score=47.25 Aligned_cols=47 Identities=26% Similarity=0.284 Sum_probs=31.6
Q ss_pred ceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHHh
Q 036619 290 KKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARMM 336 (352)
Q Consensus 290 kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 336 (352)
..-++||||+... |......+...+......+.+||||..+.+...+
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3458999999764 3345666777777666678999999999887654
No 381
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.82 E-value=0.082 Score=47.00 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=53.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhh--hccCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCcccH-----
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEV--KRNFEKVIWVCVSDTF-DQIRIAKAIIEGLGKSA-------SGLNEF----- 276 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~----- 276 (352)
..++|.|..|+|||+|+..+.++... +.+-+.++++-+.+.. .+.+++.++...-.... .+..-.
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46789999999999999888875331 1234678888887755 45556555554321110 011111
Q ss_pred HHHHHHHHHhc---CCceEEEEecCC
Q 036619 277 QSLMSRIQSSI---KGKKNFLVLDDV 299 (352)
Q Consensus 277 ~~~~~~l~~~l---~~kr~LlVlDdv 299 (352)
-...-.+.+++ ++++.|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 11223345554 378999999998
No 382
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.82 E-value=0.0062 Score=51.17 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 383
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.81 E-value=0.014 Score=51.91 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=57.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-------------------
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS------------------- 269 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------------------- 269 (352)
+.-+++.|+|.+|+|||+++.++... ...++..++||+..... ..+.+...+ ++..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~~--~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~ 95 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEESP--EELLENARS-FGWDLEVYIEKGKLAILDAFLSE 95 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCCH--HHHHHHHHH-cCCCHHHHhhcCCEEEEEccccc
Confidence 55789999999999999999766653 44458889999988743 344433322 2111
Q ss_pred CC-------CcccHHHHHHHHHHhcCC-ceEEEEecCCC
Q 036619 270 AS-------GLNEFQSLMSRIQSSIKG-KKNFLVLDDVW 300 (352)
Q Consensus 270 ~~-------~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw 300 (352)
.. ...+...+...|.+..+. +..-+|+|.+-
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~ 134 (260)
T COG0467 96 KGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSIT 134 (260)
T ss_pred cccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 00 012455667777776643 37788999985
No 384
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.81 E-value=0.081 Score=51.00 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=52.8
Q ss_pred eEEEEEEecCCCcHHHHH-HHHHhhhhhh-----ccCCeEEEEEeCCCCCHHHHHHHHHHHhCC-CC-------CCcccH
Q 036619 211 LQVISLVGLGGIGKTTLA-QLAYNNDEVK-----RNFEKVIWVCVSDTFDQIRIAKAIIEGLGK-SA-------SGLNEF 276 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~-------~~~~~~ 276 (352)
-..++|.|..|+|||+|| ..+.+...+. ++-..++++-+.+..+...-+.+.++.-+. .. .+....
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 356789999999999997 6667654321 244578888888876544334444444331 10 011111
Q ss_pred H-----HHHHHHHHhc--CCceEEEEecCCC
Q 036619 277 Q-----SLMSRIQSSI--KGKKNFLVLDDVW 300 (352)
Q Consensus 277 ~-----~~~~~l~~~l--~~kr~LlVlDdvw 300 (352)
. -..-.+.+++ +++..|||+||+-
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 1 1112233333 5899999999993
No 385
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.80 E-value=0.15 Score=50.31 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=32.5
Q ss_pred HHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHH
Q 036619 282 RIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARM 335 (352)
Q Consensus 282 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 335 (352)
.|...|-.+.-+|+||.--.. |...-..+...+.. .|..||++|.+.+....
T Consensus 165 ~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~ 217 (530)
T PRK15064 165 LLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNS 217 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHh
Confidence 344455566779999998654 33334445555543 35568999988776544
No 386
>PRK05922 type III secretion system ATPase; Validated
Probab=95.79 E-value=0.069 Score=50.74 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=48.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC-------Cccc-----HH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFDQIRIAKAIIEGLGKSAS-------GLNE-----FQ 277 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~-------~~~~-----~~ 277 (352)
-..++|+|..|+|||||.+.+.... +.+....+.+.. ...+...+.+.......... +... ..
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 3568999999999999999998642 223333333333 23344555554443322110 1111 11
Q ss_pred HHHHHHHHhc--CCceEEEEecCC
Q 036619 278 SLMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 278 ~~~~~l~~~l--~~kr~LlVlDdv 299 (352)
...-.+.+++ ++++.||++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 2223344554 689999999999
No 387
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.79 E-value=0.089 Score=44.16 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=66.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC---CCCHHHHHHHHH--HH--hCCC----C-CCccc---
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD---TFDQIRIAKAII--EG--LGKS----A-SGLNE--- 275 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~--~~--l~~~----~-~~~~~--- 275 (352)
...|-|+|..|-||||+|--+.-. ...+=-.+..+-.-+ .......+..+- .. .+.. . ....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 467889999999999999666543 222222333333322 223333333310 00 0110 0 00011
Q ss_pred HHHHHHHHHHhcCCceE-EEEecCCCC---CCccChhHHHHhhccCCCCcEEEEecCCh
Q 036619 276 FQSLMSRIQSSIKGKKN-FLVLDDVWD---GDYNKWQPFFRCLKNGLHGSKILVTTRNE 330 (352)
Q Consensus 276 ~~~~~~~l~~~l~~kr~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (352)
........++.+.+.+| |||||.+-. ...-..+++...+.....+.-||+|=|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 22334455666655555 999999833 22245677888887777788999999986
No 388
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.78 E-value=0.047 Score=48.66 Aligned_cols=108 Identities=16% Similarity=0.239 Sum_probs=55.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
-.++.|.|..|.||||+++.+.+. +...-..++ .+.++.... +.. ..++...... .......++..|+..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~--i~~~~~~ii--tiEdp~E~~--~~~-~~q~~v~~~~---~~~~~~~l~~~lR~~ 149 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSE--LNTPEKNII--TVEDPVEYQ--IPG-INQVQVNEKA---GLTFARGLRAILRQD 149 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEE--EECCCceec--CCC-ceEEEeCCcC---CcCHHHHHHHHhccC
Confidence 357899999999999999887653 221111222 232221110 000 0111111111 113456677777777
Q ss_pred eEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHH
Q 036619 291 KNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVA 333 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va 333 (352)
.=.|+++++.+. +....+..+. ..|..++-|..-.++.
T Consensus 150 PD~i~vgEiR~~--e~a~~~~~aa---~tGh~v~tTlHa~~~~ 187 (264)
T cd01129 150 PDIIMVGEIRDA--ETAEIAVQAA---LTGHLVLSTLHTNDAP 187 (264)
T ss_pred CCEEEeccCCCH--HHHHHHHHHH---HcCCcEEEEeccCCHH
Confidence 888999999554 3333332322 2355465555554443
No 389
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.78 E-value=0.087 Score=43.18 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=33.3
Q ss_pred ceEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChHHHHHhCCCCeeeCC
Q 036619 290 KKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNESVARMMGSTDIISIE 345 (352)
Q Consensus 290 kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~va~~~~~~~~~~l~ 345 (352)
++-|++||+.-.. +...-..+...+... ..|+.+|++|.+.+++... ...+.+.
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~--d~~~~l~ 154 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELA--DKLIHIK 154 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhh--hhEEEEE
Confidence 6789999998654 222233344444321 1278899999999888753 4444443
No 390
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.78 E-value=0.081 Score=48.48 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...++.++|++|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999888764
No 391
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.78 E-value=0.0093 Score=51.10 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+.+.|+|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45788999999999999999988753
No 392
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.77 E-value=0.028 Score=52.87 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=36.3
Q ss_pred CccccccchHHHHHHHHcCc--------cccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCE--------SSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.++.++.+.-.+... .-.....++.|.++|++|+|||+||+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45788888888776555432 0001123467889999999999999999874
No 393
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.77 E-value=0.007 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999999874
No 394
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.76 E-value=0.057 Score=51.27 Aligned_cols=85 Identities=15% Similarity=0.230 Sum_probs=50.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCC-HHHHHHHHHHHhCCC-------CCCcccH-----H
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFD-QIRIAKAIIEGLGKS-------ASGLNEF-----Q 277 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~-----~ 277 (352)
-..++|+|..|+|||||++.+.... ..+.++.+-+.+... +..+...++..-+.. ..+..-. -
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4678999999999999999998631 224555566655443 344555544331111 0011111 1
Q ss_pred HHHHHHHHhc--CCceEEEEecCC
Q 036619 278 SLMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 278 ~~~~~l~~~l--~~kr~LlVlDdv 299 (352)
...-.+.+++ +++..||++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1122244444 689999999998
No 395
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.76 E-value=0.0054 Score=47.74 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=18.1
Q ss_pred EEEEecCCCcHHHHHHHHHhhhhhhccCC
Q 036619 214 ISLVGLGGIGKTTLAQLAYNNDEVKRNFE 242 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 242 (352)
+.|+|.+|+||||+|+.+... +...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 579999999999999999973 555564
No 396
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.76 E-value=0.071 Score=49.43 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=33.1
Q ss_pred HHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC--CCCcEEEEecCChHHHHHh
Q 036619 282 RIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG--LHGSKILVTTRNESVARMM 336 (352)
Q Consensus 282 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~IivTTR~~~va~~~ 336 (352)
.|...|....-+|++|..-+. |...-..+...+... ..|..||++|.+.+++..+
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~ 207 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRI 207 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 345555667778899987543 222333444444432 2266799999888776543
No 397
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.75 E-value=0.0089 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHHhhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNND 235 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~ 235 (352)
|.|+|..|+|||||.+.+...+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6799999999999999998754
No 398
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.74 E-value=0.13 Score=43.80 Aligned_cols=122 Identities=20% Similarity=0.262 Sum_probs=66.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeC-------------------CCCC---HHHH----------
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS-------------------DTFD---QIRI---------- 258 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-------------------~~~~---~~~~---------- 258 (352)
-.|++|+|+.|+|||||.+.+..=+.. =+..+|+.-. |.|+ ...+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 468999999999999999988753222 2334555321 1121 1112
Q ss_pred ------------HHHHHHHhCCC------CCCcccHHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhcc-CC
Q 036619 259 ------------AKAIIEGLGKS------ASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKN-GL 318 (352)
Q Consensus 259 ------------~~~i~~~l~~~------~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~ 318 (352)
..++++.++.. +...+.-++-.-.|.+.|.-++-++.||..-+. |++.-.++...+.. ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 22223333322 111222333344566777777888899998654 33333344444432 23
Q ss_pred CCcEEEEecCChHHHHH
Q 036619 319 HGSKILVTTRNESVARM 335 (352)
Q Consensus 319 ~gs~IivTTR~~~va~~ 335 (352)
.|-..|+.|..-.-|+.
T Consensus 185 eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 185 EGMTMIIVTHEMGFARE 201 (240)
T ss_pred cCCeEEEEechhHHHHH
Confidence 46667777776655554
No 399
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.74 E-value=0.01 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+..++.|+|++|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999873
No 400
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.74 E-value=0.042 Score=44.01 Aligned_cols=21 Identities=48% Similarity=0.640 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (352)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999998875
No 401
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.74 E-value=0.0073 Score=48.38 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 402
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.73 E-value=0.15 Score=49.65 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|.|||||.+.+..-
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 403
>PRK08149 ATP synthase SpaL; Validated
Probab=95.72 E-value=0.067 Score=50.76 Aligned_cols=85 Identities=13% Similarity=0.247 Sum_probs=49.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC-CCCHHHHHHHHHHHhCCC-------CCCccc-----HH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFDQIRIAKAIIEGLGKS-------ASGLNE-----FQ 277 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~-----~~ 277 (352)
-..++|+|..|+|||||.+.++... +-+.++...+.. .-++..+........... ..+... ..
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 4578999999999999999998742 223333333433 334555655555533221 011111 11
Q ss_pred HHHHHHHHhc--CCceEEEEecCC
Q 036619 278 SLMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 278 ~~~~~l~~~l--~~kr~LlVlDdv 299 (352)
.....+.+++ ++|+.||++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1223334444 689999999998
No 404
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.71 E-value=0.049 Score=53.14 Aligned_cols=96 Identities=18% Similarity=0.132 Sum_probs=53.0
Q ss_pred HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEE-eCCCCCHHHHHHHHHHHhCCC----
Q 036619 195 ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC-VSDTFDQIRIAKAIIEGLGKS---- 269 (352)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l~~~---- 269 (352)
+++++|+.-. .-....|+|++|+|||||++.+.+.. ...+-++.++|. |.+..... .++.+.+...
T Consensus 405 RvIDll~PIG-----kGQR~LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVas 475 (672)
T PRK12678 405 RVIDLIMPIG-----KGQRGLIVSPPKAGKTTILQNIANAI-TTNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIAS 475 (672)
T ss_pred eeeeeecccc-----cCCEeEEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEE
Confidence 4555554432 23567799999999999999998842 223445555443 44433221 2233333221
Q ss_pred -CCCcc----cHHHHHHHHHHhc--CCceEEEEecCC
Q 036619 270 -ASGLN----EFQSLMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 270 -~~~~~----~~~~~~~~l~~~l--~~kr~LlVlDdv 299 (352)
.+... ....+.-.+.+++ +++.+||++|++
T Consensus 476 T~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 476 TFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11110 0122233344444 789999999998
No 405
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.71 E-value=0.0089 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|+|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999874
No 406
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.71 E-value=0.0086 Score=49.84 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58899999999999999999864
No 407
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.71 E-value=0.054 Score=51.36 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=47.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-------CCCcccHH-----H
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS-------ASGLNEFQ-----S 278 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 278 (352)
-..++|+|..|+|||||.+.+..... ....++...-...-.+.++....+..-+.. ..+..... .
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 45789999999999999998886421 122222222222333444555443332111 01111111 1
Q ss_pred HHHHHHHhc--CCceEEEEecCC
Q 036619 279 LMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 279 ~~~~l~~~l--~~kr~LlVlDdv 299 (352)
..-.+.+++ +++..||++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 222344444 689999999998
No 408
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.71 E-value=0.026 Score=48.61 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|+|++|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3779999999999999998864
No 409
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.70 E-value=0.14 Score=46.05 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|..|.|||||.+.+..-
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 458999999999999999999853
No 410
>PRK06217 hypothetical protein; Validated
Probab=95.69 E-value=0.0084 Score=50.31 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=25.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccC--CeEEEEE
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVC 248 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~ 248 (352)
.|.|.|.+|+||||||+.+...... .+| |..+|-.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~~ 39 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWLP 39 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeecc
Confidence 4889999999999999999975332 233 4556643
No 411
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.68 E-value=0.092 Score=45.51 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=30.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCC
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 252 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 252 (352)
+.-.++.|.|.+|+|||+++..+... ..+. =..++|++...+
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~-~~~~-g~~~~y~s~e~~ 55 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQ-GLKN-GEKAMYISLEER 55 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-HHhC-CCeEEEEECCCC
Confidence 34678999999999999999777653 2222 346778877664
No 412
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.66 E-value=0.042 Score=54.64 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
++..|.|.+|.||||++..+..
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~ 182 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLL 182 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 5778899999999999988775
No 413
>PRK13949 shikimate kinase; Provisional
Probab=95.65 E-value=0.0091 Score=49.43 Aligned_cols=22 Identities=45% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-|.|+|++|+|||||++.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 414
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.64 E-value=0.05 Score=45.32 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=17.4
Q ss_pred EEEEEEecCCCcHHH-HHHHHHh
Q 036619 212 QVISLVGLGGIGKTT-LAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTt-La~~v~~ 233 (352)
+.+.|.|..|.|||+ ++..++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~ 47 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALE 47 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHH
Confidence 577899999999999 4455554
No 415
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.64 E-value=0.025 Score=43.86 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=33.8
Q ss_pred ccccccchHHHHHHHH----cCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 185 EVCGRVDEKSELFSKL----LCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L----~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++|..-..+.+++.+ .+. .+.++-|++..|.+|+|||.+++.+.++
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4666655555554444 333 2367899999999999999999888765
No 416
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.63 E-value=0.11 Score=47.84 Aligned_cols=37 Identities=30% Similarity=0.343 Sum_probs=24.9
Q ss_pred EEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC
Q 036619 214 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 251 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 251 (352)
+.+.|++|.||||+++.+.+.-.....+ .+++++..+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~Dd 38 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYDD 38 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEcccc
Confidence 5689999999999999998753222222 345555444
No 417
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.62 E-value=0.041 Score=55.66 Aligned_cols=131 Identities=18% Similarity=0.124 Sum_probs=69.8
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
+.++|....+.++++.+..-.. . ..-|.|+|..|+||+++|+.+++.-. + .-..-+.|++..-. ...+..+++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~---~-~~pvli~Ge~GtGK~~~A~~ih~~s~-r-~~~pfv~vnc~~~~-~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK---S-SFPVLLCGEEGVGKALLAQAIHNESE-R-AAGPYIAVNCQLYP-DEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC---c-CCCEEEECCCCcCHHHHHHHHHHhCC-c-cCCCeEEEECCCCC-hHHHHHHhc
Confidence 3578888888887777654331 1 22366999999999999999987421 1 11122334444322 122222222
Q ss_pred HHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC---C--------CcEEEEecCC
Q 036619 264 EGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL---H--------GSKILVTTRN 329 (352)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~---~--------gs~IivTTR~ 329 (352)
-........ . ....+-....=.|+||++..........|...+..+. . ..+||.||..
T Consensus 398 g~~~~~~~~-~-------~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 398 GSDRTDSEN-G-------RLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCCcCccC-C-------CCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 211100000 0 0000001223468999998776566677777775431 1 2467776654
No 418
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.62 E-value=0.04 Score=53.41 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++-|.++|++|+|||.+|+.+.+.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Confidence 3566889999999999999999884
No 419
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.62 E-value=0.057 Score=44.63 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=44.3
Q ss_pred EEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCC--ce
Q 036619 214 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKG--KK 291 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--kr 291 (352)
+.|.|.+|+|||++|.++... .....+++.-...++.+ ....|.......+...... +....|.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~-E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTI-ETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEe-ecHHHHHHHHHhcCCC
Confidence 578999999999999877642 23467777777777653 3344433322222221111 112233333311 23
Q ss_pred EEEEecCC
Q 036619 292 NFLVLDDV 299 (352)
Q Consensus 292 ~LlVlDdv 299 (352)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 37999987
No 420
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.62 E-value=0.059 Score=47.91 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=47.5
Q ss_pred eEEEEEEecCCCcHHHHH-HHHHhhhhhhccCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCcccH----
Q 036619 211 LQVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEKV-IWVCVSDTF-DQIRIAKAIIEGLGKS-------ASGLNEF---- 276 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~---- 276 (352)
-.-++|+|..|+|||+|| ..+.+.. +-+.+ +++-+.+.. .+..+.+++.+.-... ..+....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 356889999999999996 6666531 23334 555565553 4455555555432111 0011111
Q ss_pred -----HHHHHHHHHhcCCceEEEEecCC
Q 036619 277 -----QSLMSRIQSSIKGKKNFLVLDDV 299 (352)
Q Consensus 277 -----~~~~~~l~~~l~~kr~LlVlDdv 299 (352)
-.+.+.++. +++..||++||+
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 122333333 689999999999
No 421
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.61 E-value=0.09 Score=48.16 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=48.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeC-CCCCHHHHHHHHHHHhCCC-------CCCccc-----HH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS-DTFDQIRIAKAIIEGLGKS-------ASGLNE-----FQ 277 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~-------~~~~~~-----~~ 277 (352)
-..++|+|..|.|||||.+.+..... -+.....-+. ..-++..+....+..-+.. ..+... ..
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999887422 1233333333 2334555555554432211 011111 11
Q ss_pred HHHHHHHHhc--CCceEEEEecCC
Q 036619 278 SLMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 278 ~~~~~l~~~l--~~kr~LlVlDdv 299 (352)
...-.+.+++ ++|..||++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1222233443 689999999997
No 422
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.0088 Score=48.80 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=18.3
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 036619 213 VISLVGLGGIGKTTLAQLAY 232 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~ 232 (352)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999998886
No 423
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.59 E-value=0.14 Score=49.94 Aligned_cols=87 Identities=20% Similarity=0.226 Sum_probs=54.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------------CCc
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSA---------------SGL 273 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------------~~~ 273 (352)
..-+++.|.|++|+|||||+.++.... .+ .-..+++++... +...+...+ +.++... +..
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~-~~-~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~ 335 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENA-CA-NKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPES 335 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH-HH-CCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEccccc
Confidence 456889999999999999997776542 22 234567666554 444555443 3443221 112
Q ss_pred ccHHHHHHHHHHhcCC-ceEEEEecCCC
Q 036619 274 NEFQSLMSRIQSSIKG-KKNFLVLDDVW 300 (352)
Q Consensus 274 ~~~~~~~~~l~~~l~~-kr~LlVlDdvw 300 (352)
...++....+.+.+.. +.-++|+|.+.
T Consensus 336 ~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 336 AGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 2345666677766643 55689999984
No 424
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.59 E-value=0.062 Score=48.19 Aligned_cols=87 Identities=21% Similarity=0.173 Sum_probs=47.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC----C---CcccHHHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSA----S---GLNEFQSLMS 281 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----~---~~~~~~~~~~ 281 (352)
.+..++.|+|.+|+|||||...+.+. ....+. .+.+. .+..+..+ ...++..+... . --.+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~~-~~VI~-gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR--LKDSVP-CAVIE-GDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--hccCCC-EEEEC-CCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 46899999999999999999998874 333332 22222 11112211 12233333221 1 0122344455
Q ss_pred HHHHhcCCceEEEEecCCCC
Q 036619 282 RIQSSIKGKKNFLVLDDVWD 301 (352)
Q Consensus 282 ~l~~~l~~kr~LlVlDdvw~ 301 (352)
.+..+....-=+||++++.+
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55555444446788999864
No 425
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.59 E-value=0.067 Score=50.90 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=49.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCC-HHHHHHHHHHHhCCC-------CCCcccH-----H
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFD-QIRIAKAIIEGLGKS-------ASGLNEF-----Q 277 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~-----~ 277 (352)
-..++|+|..|+|||||++.+++... .+.++.+-+..... +..+..+.+..-+.. ..+.... .
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 46789999999999999999987421 23455555555443 334444444322111 0011111 1
Q ss_pred HHHHHHHHhc--CCceEEEEecCC
Q 036619 278 SLMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 278 ~~~~~l~~~l--~~kr~LlVlDdv 299 (352)
...-.+.+++ +++..||++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1223344444 689999999999
No 426
>PRK15115 response regulator GlrR; Provisional
Probab=95.59 E-value=0.053 Score=52.24 Aligned_cols=133 Identities=18% Similarity=0.134 Sum_probs=66.6
Q ss_pred ccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHH
Q 036619 185 EVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIE 264 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 264 (352)
.++|....+.++.+....-. ..-..+.|.|.+|+|||+||+.+.+... + .-..-+.+++..- + ...+...
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----~~~~~vli~Ge~GtGk~~lA~~ih~~s~-r-~~~~f~~i~c~~~-~-~~~~~~~-- 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----QSDVSVLINGQSGTGKEILAQAIHNASP-R-ASKPFIAINCGAL-P-EQLLESE-- 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----cCCCeEEEEcCCcchHHHHHHHHHHhcC-C-CCCCeEEEeCCCC-C-HHHHHHH--
Confidence 46776666666665543322 1123456999999999999999987421 1 1112223333321 1 2222221
Q ss_pred HhCCCCCCc-ccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC-----------CCcEEEEecCCh
Q 036619 265 GLGKSASGL-NEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRNE 330 (352)
Q Consensus 265 ~l~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTTR~~ 330 (352)
+.+...+. ..... ...........-.|+||++..........|...+..+. ...+||.||..+
T Consensus 205 -lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 205 -LFGHARGAFTGAVS--NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred -hcCCCcCCCCCCcc--CCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC
Confidence 11111000 00000 00000011223479999998766556677777776432 134788887654
No 427
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.016 Score=47.91 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++.|.|+.|+|||||++.++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999985
No 428
>PRK13947 shikimate kinase; Provisional
Probab=95.56 E-value=0.01 Score=49.08 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 429
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.55 E-value=0.19 Score=47.18 Aligned_cols=73 Identities=34% Similarity=0.352 Sum_probs=43.7
Q ss_pred HHHHHHHHcCcccc---CCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCC--HHHHHHHHHHHhC
Q 036619 193 KSELFSKLLCESSE---QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFD--QIRIAKAIIEGLG 267 (352)
Q Consensus 193 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~ 267 (352)
.++|++.|-..... ....+.||-.+|.-|.||||.+-++.+.. +. .....-+...+.+. .-+-++.+.++++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~l--kk-~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYL--KK-KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHH--HH-cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 34556655431111 12457999999999999999997777642 33 33344444444433 3355666777665
Q ss_pred C
Q 036619 268 K 268 (352)
Q Consensus 268 ~ 268 (352)
.
T Consensus 156 v 156 (451)
T COG0541 156 V 156 (451)
T ss_pred C
Confidence 4
No 430
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.55 E-value=0.022 Score=52.90 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=83.7
Q ss_pred CccccccchHHHHHHHHcCccc-----------cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhcc--CC---eEE--
Q 036619 184 GEVCGRVDEKSELFSKLLCESS-----------EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN--FE---KVI-- 245 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~---~~~-- 245 (352)
-+..|-..+...|.+.+-.... -....-.++.|+|..|+|||||.+.+......... |. ..+
T Consensus 371 ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~v 450 (593)
T COG2401 371 LDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV 450 (593)
T ss_pred eecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceec
Confidence 3455666666666665532211 01233468899999999999999998864222111 10 011
Q ss_pred -------EEEe--CCCCCHHHHHHHHHHHhCC-------------CCC--------CcccHHHHHHHHHHhcCCceEEEE
Q 036619 246 -------WVCV--SDTFDQIRIAKAIIEGLGK-------------SAS--------GLNEFQSLMSRIQSSIKGKKNFLV 295 (352)
Q Consensus 246 -------wv~v--s~~~~~~~~~~~i~~~l~~-------------~~~--------~~~~~~~~~~~l~~~l~~kr~LlV 295 (352)
-+.- ...++-..++.++.+..+. ... ...+.+.-..+|...+.++.-+++
T Consensus 451 p~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~ 530 (593)
T COG2401 451 PKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLL 530 (593)
T ss_pred cccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEE
Confidence 1111 1122322344433332222 110 112223334667788888888999
Q ss_pred ecCCCCCCc-cChhHHHHhhccC--CCCcEEEEecCChHHHHHhCCCCe
Q 036619 296 LDDVWDGDY-NKWQPFFRCLKNG--LHGSKILVTTRNESVARMMGSTDI 341 (352)
Q Consensus 296 lDdvw~~~~-~~~~~l~~~l~~~--~~gs~IivTTR~~~va~~~~~~~~ 341 (352)
.|.....-+ -.-..+..-+... ..|+.+++.|+++++-+.+.+...
T Consensus 531 iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 531 IDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 998754311 1111222223221 258889999999999988766443
No 431
>PRK14530 adenylate kinase; Provisional
Probab=95.55 E-value=0.01 Score=51.18 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|+|++|+||||+|+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 432
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.54 E-value=0.13 Score=46.84 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|..|.|||||.+.++..
T Consensus 71 Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 71 KSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999753
No 433
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.53 E-value=0.11 Score=43.90 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNND 235 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~ 235 (352)
..|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998753
No 434
>PRK15453 phosphoribulokinase; Provisional
Probab=95.53 E-value=0.09 Score=46.89 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=43.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCC-eEEEEEeCCCC--CHHHHHHHHH--HHhCC--C--CCCcccHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTF--DQIRIAKAII--EGLGK--S--ASGLNEFQSL 279 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~--~~~~~~~~i~--~~l~~--~--~~~~~~~~~~ 279 (352)
.+..+|+|.|.+|+||||+++.+.+. .. +.. ..+.++...-. +....-..+. +.-+. . .+...+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~i--f~-~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL 79 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKI--FR-RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDEL 79 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH--Hh-hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHH
Confidence 45689999999999999999988852 21 112 23444433322 3222222111 11111 1 2455667778
Q ss_pred HHHHHHhcCC
Q 036619 280 MSRIQSSIKG 289 (352)
Q Consensus 280 ~~~l~~~l~~ 289 (352)
.+.++.+.++
T Consensus 80 ~~~l~~l~~~ 89 (290)
T PRK15453 80 EQLFREYGET 89 (290)
T ss_pred HHHHHHHhcC
Confidence 8888777653
No 435
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.52 E-value=0.076 Score=41.34 Aligned_cols=37 Identities=22% Similarity=0.046 Sum_probs=25.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEe
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 249 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 249 (352)
.+.|.|..|.|||+.+...............++|++-
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p 38 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAP 38 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcC
Confidence 3678999999999999777665333334456666643
No 436
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.52 E-value=0.011 Score=50.01 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=22.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 478999999999999999999885
No 437
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.52 E-value=0.16 Score=50.88 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-..++|+|..|.|||||++.+..-
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999988753
No 438
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.51 E-value=0.011 Score=49.67 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999999764
No 439
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.51 E-value=0.26 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-..++|+|..|+|||||++.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998875
No 440
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.51 E-value=0.037 Score=52.08 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=36.9
Q ss_pred CccccccchHHHHHHHHcCc--------cccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCE--------SSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.++.+..+...+... ..........+.++|++|+|||+||+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46889888888887777431 1000112467899999999999999999874
No 441
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.50 E-value=0.25 Score=44.75 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.++++.|+.|.|||||.+.+..-
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 442
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.49 E-value=0.016 Score=48.58 Aligned_cols=37 Identities=32% Similarity=0.417 Sum_probs=27.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEe
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 249 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 249 (352)
.+++.|+|+.|+|||||++.+... ....|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--cccccccceeecc
Confidence 367889999999999999999873 3455654444443
No 443
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.49 E-value=0.01 Score=47.24 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (352)
+.|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999874
No 444
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.48 E-value=0.011 Score=47.70 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=19.0
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (352)
|.|+|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 679999999999999999864
No 445
>PRK13409 putative ATPase RIL; Provisional
Probab=95.48 E-value=0.16 Score=50.74 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=65.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhh-cc--CCe-EEEEEeCCC------CCHHHHH-------------HHHHHHhC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVK-RN--FEK-VIWVCVSDT------FDQIRIA-------------KAIIEGLG 267 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~--F~~-~~wv~vs~~------~~~~~~~-------------~~i~~~l~ 267 (352)
-.+++|+|+.|+|||||++.+....... .. |+. +.+ +.+. .++.+.+ .++++.++
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y--~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISY--KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEE--ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 3589999999999999999998642111 10 111 111 2222 1222221 22333333
Q ss_pred CCC------CCcccHHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC--CCCcEEEEecCChHHHHHhC
Q 036619 268 KSA------SGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG--LHGSKILVTTRNESVARMMG 337 (352)
Q Consensus 268 ~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~IivTTR~~~va~~~~ 337 (352)
... ...+.-+.-.-.|...|....-+++||.--.. |...-..+...+..- ..|..||++|.+...+..++
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~a 521 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYIS 521 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 210 01122222233355566677889999986432 223333444444432 23556888998877665543
No 446
>PRK14527 adenylate kinase; Provisional
Probab=95.48 E-value=0.013 Score=49.56 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+|.|+|++|+||||+|+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 447
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.47 E-value=0.034 Score=47.33 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=54.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHHh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS--GLNEFQSLMSRIQSS 286 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~ 286 (352)
..+.++.+.|.+|.||||++..+..... ....+.|+...--....-...+...-..... .......+...+.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 88 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEY 88 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999998876421 2345555433211100111112221111000 011234456666666
Q ss_pred cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHH
Q 036619 287 IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVA 333 (352)
Q Consensus 287 l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va 333 (352)
.-.+++=||+|..-.. .+....+...+...+-...|++..-+++++
T Consensus 89 a~~~~~nii~E~tl~~-~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s 134 (199)
T PF06414_consen 89 AIENRYNIIFEGTLSN-PSKLRKLIREAKAAGYKVELYYVAVPPELS 134 (199)
T ss_dssp HHHCT--EEEE--TTS-SHHHHHHHHHHHCTT-EEEEEEE---HHHH
T ss_pred HHHcCCCEEEecCCCC-hhHHHHHHHHHHcCCceEEEEEEECCHHHH
Confidence 6677888888987443 123333556666543333343333344443
No 448
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.46 E-value=0.049 Score=50.76 Aligned_cols=109 Identities=16% Similarity=0.244 Sum_probs=56.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCC---eEEEEEeCCCC--CHHHHHH--HHHHHhCCCCCCcccHHHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE---KVIWVCVSDTF--DQIRIAK--AIIEGLGKSASGLNEFQSLMSRI 283 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~~--~~~~~~~--~i~~~l~~~~~~~~~~~~~~~~l 283 (352)
-..+.|+|+.|+||||+++.+.+. +....+ .++. +.++. ....+.. ..+.+ .. ...+.......+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~--i~~~~~~~~~Ivt--~EdpiE~~~~~~~~~~~~v~Q---~~-v~~~~~~~~~~l 205 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRE--LAEAPDSHRKILT--YEAPIEFVYDEIETISASVCQ---SE-IPRHLNNFAAGV 205 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCcEEEE--eCCCceEeccccccccceeee---ee-ccccccCHHHHH
Confidence 478999999999999999888763 221111 2222 22222 1111100 00001 00 011122345667
Q ss_pred HHhcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHH
Q 036619 284 QSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESV 332 (352)
Q Consensus 284 ~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (352)
+..|......|++..+.+. +.+..++.....|..|+-|-...++
T Consensus 206 ~~aLR~~Pd~i~vGEiRd~-----et~~~al~aa~tGh~v~tTlHa~~~ 249 (358)
T TIGR02524 206 RNALRRKPHAILVGEARDA-----ETISAALEAALTGHPVYTTLHSSGV 249 (358)
T ss_pred HHHhccCCCEEeeeeeCCH-----HHHHHHHHHHHcCCcEEEeeccCCH
Confidence 7788888889999988443 3333344433346555555555443
No 449
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.46 E-value=0.1 Score=50.29 Aligned_cols=85 Identities=21% Similarity=0.216 Sum_probs=49.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHHHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSLMSRI 283 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 283 (352)
..-.++.|.|.+|+|||||+.++.... ... -..++|++.... ...+.. -+..++.... ...+.+.+...+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~-a~~-g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i 166 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQL-AKN-QMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANI 166 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-Hhc-CCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHH
Confidence 446789999999999999998876542 222 235777776543 333322 1233332211 123445444444
Q ss_pred HHhcCCceEEEEecCCCC
Q 036619 284 QSSIKGKKNFLVLDDVWD 301 (352)
Q Consensus 284 ~~~l~~kr~LlVlDdvw~ 301 (352)
.+ .+.-++|+|.+..
T Consensus 167 ~~---~~~~~vVIDSIq~ 181 (454)
T TIGR00416 167 EE---ENPQACVIDSIQT 181 (454)
T ss_pred Hh---cCCcEEEEecchh
Confidence 33 3455899999854
No 450
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=95.46 E-value=0.2 Score=49.30 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|+|||||.+.++.-
T Consensus 37 Ge~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 37 GEVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 451
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.45 E-value=0.23 Score=48.99 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+-..++|+|+.|.|||||++.+..-
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999988763
No 452
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.45 E-value=0.16 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-..++|+|..|.|||||++.+..-
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999988753
No 453
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.45 E-value=0.021 Score=46.56 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=26.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEe
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 249 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 249 (352)
|++|+|+.|+|||||+..+...-+ ...+...+.-+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~-~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK-ARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEecc
Confidence 578999999999999999988432 234555554443
No 454
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.44 E-value=0.027 Score=57.83 Aligned_cols=120 Identities=16% Similarity=0.230 Sum_probs=60.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---Ccc----cHHHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---GLN----EFQSLMSRI 283 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~----~~~~~~~~l 283 (352)
..++.|+|+.|.|||||.+.+....-.. ...++|.+..... ...+.++...++.... ... .+..+...+
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~a---q~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMF---QSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHH---HhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHHH
Confidence 4789999999999999999887541111 1111222221100 0111222211111100 011 122222222
Q ss_pred HHhcCCceEEEEecCCCCC-CccChhHHH-Hhhcc-CCCCcEEEEecCChHHHHHh
Q 036619 284 QSSIKGKKNFLVLDDVWDG-DYNKWQPFF-RCLKN-GLHGSKILVTTRNESVARMM 336 (352)
Q Consensus 284 ~~~l~~kr~LlVlDdvw~~-~~~~~~~l~-~~l~~-~~~gs~IivTTR~~~va~~~ 336 (352)
... ..+-|++||..-.. +......+. ..+.. ...|+.+|+||...++....
T Consensus 398 ~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~ 451 (771)
T TIGR01069 398 SKT--TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALM 451 (771)
T ss_pred Hhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 222 57899999998653 222333332 22221 12478899999999886643
No 455
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.43 E-value=0.024 Score=46.24 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=29.5
Q ss_pred cchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 190 VDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 190 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+.+++|.++|. + +++.++|..|+|||||...+...
T Consensus 23 ~~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 356777888773 3 67889999999999999999875
No 456
>PLN02348 phosphoribulokinase
Probab=95.41 E-value=0.2 Score=46.81 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...-+|+|.|.+|+||||||+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 457
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.40 E-value=0.14 Score=50.57 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+-..++|+|+.|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999753
No 458
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.39 E-value=0.075 Score=43.98 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=43.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCccc---HHHHHHHHHHhcCC
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNE---FQSLMSRIQSSIKG 289 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~l~~ 289 (352)
++.|.|.+|+||||+|..+.... . ...+++.....++. +....|.......+..... ...+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~---~~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--G---LQVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--C---CCcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 57899999999999998887531 1 12334443333333 3444444443322222211 12344444443333
Q ss_pred ceEEEEecCC
Q 036619 290 KKNFLVLDDV 299 (352)
Q Consensus 290 kr~LlVlDdv 299 (352)
. -++++|.+
T Consensus 77 ~-~~VlID~L 85 (170)
T PRK05800 77 G-RCVLVDCL 85 (170)
T ss_pred C-CEEEehhH
Confidence 2 27889987
No 459
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.38 E-value=0.013 Score=48.40 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHHhhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNND 235 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~ 235 (352)
|.|.|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999998753
No 460
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.38 E-value=0.088 Score=50.23 Aligned_cols=88 Identities=14% Similarity=0.125 Sum_probs=54.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCC-HHHHHHHHHHHhCCC-------CCCccc-----HH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFD-QIRIAKAIIEGLGKS-------ASGLNE-----FQ 277 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~-----~~ 277 (352)
-.-++|.|.+|+|||+|+..+..+.. +.+-+.++++-+..... +..+++++...-... ..+... .-
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 35688999999999999988876532 33446888888766553 445555554431111 011111 11
Q ss_pred HHHHHHHHhc---CCceEEEEecCC
Q 036619 278 SLMSRIQSSI---KGKKNFLVLDDV 299 (352)
Q Consensus 278 ~~~~~l~~~l---~~kr~LlVlDdv 299 (352)
...-.+.+++ +++..||++||+
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecCh
Confidence 2233455555 468999999999
No 461
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.37 E-value=0.016 Score=49.71 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=23.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+++++|+++|..|+|||||..++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999888764
No 462
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.37 E-value=0.051 Score=45.80 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNND 235 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (352)
+|.|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998753
No 463
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.37 E-value=0.011 Score=48.56 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.5
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (352)
|.|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998874
No 464
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.37 E-value=0.13 Score=48.03 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|.|||||.+.+..-
T Consensus 30 Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCC
Confidence 358999999999999999999864
No 465
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.36 E-value=0.18 Score=50.27 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.-..++|+|+.|.|||||++.+...
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999764
No 466
>PRK13975 thymidylate kinase; Provisional
Probab=95.35 E-value=0.015 Score=49.27 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..|.|.|+.|+||||+++.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999974
No 467
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.35 E-value=0.058 Score=47.69 Aligned_cols=77 Identities=22% Similarity=0.152 Sum_probs=42.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCC--HHHHHHHHHHHh----CCC--CCCcccHHHHHHHHH
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFD--QIRIAKAIIEGL----GKS--ASGLNEFQSLMSRIQ 284 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l----~~~--~~~~~~~~~~~~~l~ 284 (352)
+|+|.|..|+||||+++.+...- ...=...+.++...-.. -...-..+.... .-. .+...+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l--~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF--AREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH--HhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 58999999999999999888632 21111234444333222 122222222221 111 245566777777887
Q ss_pred HhcCCce
Q 036619 285 SSIKGKK 291 (352)
Q Consensus 285 ~~l~~kr 291 (352)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7776543
No 468
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.016 Score=46.95 Aligned_cols=24 Identities=33% Similarity=0.666 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+++.|+|.+|+||||+.+.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 689999999999999999887763
No 469
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.33 E-value=0.017 Score=49.10 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999874
No 470
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.33 E-value=0.016 Score=48.72 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999874
No 471
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.30 E-value=0.017 Score=53.35 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=36.7
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+.++|.++.+..|+..+.++. +.-+.|.|..|+||||+|+.+++-
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~------~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPK------IGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred HHHhChHHHHHHHHHhccCCC------CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 578999988888887776643 455669999999999999999764
No 472
>PLN02796 D-glycerate 3-kinase
Probab=95.30 E-value=0.13 Score=47.37 Aligned_cols=26 Identities=31% Similarity=0.161 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+-+|+|.|..|+|||||++.+...
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999999999864
No 473
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.30 E-value=0.053 Score=53.19 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=70.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhh-hhhccCCeEEEEEeCCCCCHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNND-EVKRNFEKVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~i 262 (352)
..++|....+.++.+.+..-. ....-|.|.|..|+||+.+|+.+++.- +-...| +-|++..-. ...+..
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pf---v~inC~~l~--e~lles- 281 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPF---VAINCGAIA--ESLLEA- 281 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCE---EEeccccCC--hhHHHH-
Confidence 358999888888888775433 223456799999999999999999742 112222 233433322 222222
Q ss_pred HHHhCCCCCCc-ccHHHHHHHHHHhc-CCceEEEEecCCCCCCccChhHHHHhhccCC---C--------CcEEEEecCC
Q 036619 263 IEGLGKSASGL-NEFQSLMSRIQSSI-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL---H--------GSKILVTTRN 329 (352)
Q Consensus 263 ~~~l~~~~~~~-~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~---~--------gs~IivTTR~ 329 (352)
.+.+...+. ..... ... ..++ ....=.|+||++..........|...+..+. - ..|||.||..
T Consensus 282 --eLFG~~~gaftga~~-~~~-~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 282 --ELFGYEEGAFTGARR-GGR-TGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred --HhcCCcccccccccc-ccc-ccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 222211100 00000 000 0000 1233458999998766555667777775431 1 2378887754
Q ss_pred h
Q 036619 330 E 330 (352)
Q Consensus 330 ~ 330 (352)
.
T Consensus 358 ~ 358 (526)
T TIGR02329 358 A 358 (526)
T ss_pred C
Confidence 3
No 474
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.29 E-value=0.015 Score=48.28 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..|.|+|+.|+|||||++.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46889999999999999999874
No 475
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.29 E-value=0.072 Score=50.83 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=49.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-------CCCcccH-----HH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS-------ASGLNEF-----QS 278 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-------~~~~~~~-----~~ 278 (352)
-..++|+|..|+|||||.+.+...... -..+++..-.....+..+.+.+...-... ..+.... ..
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 468899999999999999999864321 12344433334444555555554432111 0011111 11
Q ss_pred HHHHHHHhc--CCceEEEEecCC
Q 036619 279 LMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 279 ~~~~l~~~l--~~kr~LlVlDdv 299 (352)
..-.+.+++ +++..||++||+
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 222344444 589999999998
No 476
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.27 E-value=0.049 Score=53.44 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=36.7
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|....+.++.+.+..-. ..-.-|.|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 358999988888888775433 22345679999999999999999974
No 477
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.27 E-value=0.017 Score=50.25 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=39.7
Q ss_pred CccccccchHH---HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhh
Q 036619 184 GEVCGRVDEKS---ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNND 235 (352)
Q Consensus 184 ~~~~gr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (352)
.+++|.++.+. -|++.|.+++.=+.-.++-|..+|++|.|||.+|+.+.+..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 46788876654 35667766554345668899999999999999999999853
No 478
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.27 E-value=0.26 Score=49.84 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=32.8
Q ss_pred HHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHHh
Q 036619 281 SRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARMM 336 (352)
Q Consensus 281 ~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 336 (352)
-.|...|-.+.=+|+||.--+. |...-..|...+... ++ .||++|.+......+
T Consensus 165 v~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~-~~-tvlivsHd~~~l~~~ 219 (635)
T PRK11147 165 AALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF-QG-SIIFISHDRSFIRNM 219 (635)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC-CC-EEEEEeCCHHHHHHh
Confidence 3344555566779999987543 223334455555543 24 588889888766543
No 479
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.27 E-value=0.21 Score=49.99 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-..++|+|..|.|||||++.+..-
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 467999999999999999988764
No 480
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.27 E-value=0.017 Score=45.74 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+++|+|..|+|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 58899999999999999998864
No 481
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.26 E-value=0.018 Score=43.51 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=19.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAY 232 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~ 232 (352)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3678999999999999999876
No 482
>PF13245 AAA_19: Part of AAA domain
Probab=95.25 E-value=0.047 Score=38.55 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=16.5
Q ss_pred EEEEEEecCCCcHHHHH-HHHHh
Q 036619 212 QVISLVGLGGIGKTTLA-QLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa-~~v~~ 233 (352)
+++.|.|++|.|||+++ ..+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56778999999999555 44444
No 483
>PRK05973 replicative DNA helicase; Provisional
Probab=95.24 E-value=0.15 Score=44.51 Aligned_cols=114 Identities=17% Similarity=0.143 Sum_probs=59.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----------CcccHHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----------GLNEFQS 278 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----------~~~~~~~ 278 (352)
.-.++.|.|.+|+|||+|+.++.... .++ -..+++++...+ ...+...+.. ++.... +....+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~-a~~-Ge~vlyfSlEes--~~~i~~R~~s-~g~d~~~~~~~~~~d~~d~~~~~~ 137 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA-MKS-GRTGVFFTLEYT--EQDVRDRLRA-LGADRAQFADLFEFDTSDAICADY 137 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH-Hhc-CCeEEEEEEeCC--HHHHHHHHHH-cCCChHHhccceEeecCCCCCHHH
Confidence 34688899999999999997776542 233 245666666553 3444444332 222110 1112233
Q ss_pred HHHHHHHhcCCceEEEEecCCCCC----CccChhHHHHhhcc--CCCCcEEEEecCCh
Q 036619 279 LMSRIQSSIKGKKNFLVLDDVWDG----DYNKWQPFFRCLKN--GLHGSKILVTTRNE 330 (352)
Q Consensus 279 ~~~~l~~~l~~kr~LlVlDdvw~~----~~~~~~~l~~~l~~--~~~gs~IivTTR~~ 330 (352)
+...+.. ..+.=++|+|-+... +......+...|.. ...|.-||+|+...
T Consensus 138 ii~~l~~--~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~ 193 (237)
T PRK05973 138 IIARLAS--APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQID 193 (237)
T ss_pred HHHHHHH--hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 3333332 123459999998532 11122221111211 23477788888654
No 484
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.23 E-value=0.23 Score=49.69 Aligned_cols=25 Identities=40% Similarity=0.428 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+-..++|+|..|.|||||++.+..-
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999988764
No 485
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=95.23 E-value=0.25 Score=49.45 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.-..++|+|+.|.|||||++.+..-
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHccC
Confidence 3578999999999999999988653
No 486
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.22 E-value=0.13 Score=52.73 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=51.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhc--CC
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSI--KG 289 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~ 289 (352)
+++.|.|.+|.||||+++.+..-. ... ...+.......-.. . .+-+..+. ....+..+...+.... -.
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~--~~~-g~~V~~~ApTg~Aa-~---~L~~~~g~---~a~Ti~~~~~~~~~~~~~~~ 438 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAW--EAA-GYRVIGAALSGKAA-E---GLQAESGI---ESRTLASLEYAWANGRDLLS 438 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHH--HhC-CCeEEEEeCcHHHH-H---HHHhccCC---ceeeHHHHHhhhccCcccCC
Confidence 477899999999999999987632 221 22333333322111 1 11111221 1122222211111100 12
Q ss_pred ceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEec
Q 036619 290 KKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT 327 (352)
Q Consensus 290 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT 327 (352)
+.-|||+|++.-.+......|.... ...|++||+.=
T Consensus 439 ~~~llIvDEasMv~~~~~~~Ll~~~--~~~~~kliLVG 474 (744)
T TIGR02768 439 DKDVLVIDEAGMVGSRQMARVLKEA--EEAGAKVVLVG 474 (744)
T ss_pred CCcEEEEECcccCCHHHHHHHHHHH--HhcCCEEEEEC
Confidence 4569999998655433334443322 23478888765
No 487
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.21 E-value=0.06 Score=52.25 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=34.5
Q ss_pred ccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 185 EVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++|....+.++...+.... ..-..+.|.|.+|+|||++|+.++..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58888877777776664332 22344679999999999999999874
No 488
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.21 E-value=0.025 Score=52.14 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=35.8
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
..++|.+..+..|+-.++++. ..-+.|.|..|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~------~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK------IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC------CCeEEEEcCCCCCHHHHHHHHHH
Confidence 468999998888877777643 44567999999999999999975
No 489
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.20 E-value=0.099 Score=49.90 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=48.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCcccH-----H
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-DQIRIAKAIIEGLGKS-------ASGLNEF-----Q 277 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 277 (352)
-..++|+|..|+|||||++.+.... ..+.++...+.... .+..+...+...-... ..+.... .
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999888631 22344333343332 3445544444432211 0111111 1
Q ss_pred HHHHHHHHhc--CCceEEEEecCC
Q 036619 278 SLMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 278 ~~~~~l~~~l--~~kr~LlVlDdv 299 (352)
...-.+.+++ ++++.||++||+
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecch
Confidence 1222344444 689999999999
No 490
>PLN02200 adenylate kinase family protein
Probab=95.20 E-value=0.019 Score=50.19 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+.+|.|.|++|+||||+|+.+...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998863
No 491
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=95.19 E-value=0.16 Score=47.44 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=33.2
Q ss_pred HHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC--C-CCcEEEEecCChHHHHHh
Q 036619 281 SRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG--L-HGSKILVTTRNESVARMM 336 (352)
Q Consensus 281 ~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~-~gs~IivTTR~~~va~~~ 336 (352)
-.|...|..+.-+|+||.--.. |......+...+..- . .|..||++|.+.+-+..+
T Consensus 146 vaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l 205 (362)
T TIGR03258 146 IAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTL 205 (362)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHh
Confidence 3355566677788999986443 323344455544421 2 256688888887765443
No 492
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.17 E-value=0.033 Score=55.65 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=50.2
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..++|.++.++.|...+... +.+.++|++|+||||+|+.+.+.- ...+|+..+|..-+. .+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np~-~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNPE-DPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCCC-cchHHHHHHHH
Confidence 46889888888777666432 358899999999999999988742 233467788866533 34555555555
Q ss_pred HHhC
Q 036619 264 EGLG 267 (352)
Q Consensus 264 ~~l~ 267 (352)
..++
T Consensus 101 ~~~G 104 (637)
T PRK13765 101 AGKG 104 (637)
T ss_pred HhcC
Confidence 4433
No 493
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.17 E-value=0.13 Score=48.82 Aligned_cols=123 Identities=18% Similarity=0.164 Sum_probs=66.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCccc-----HHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSA-------SGLNE-----FQS 278 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-------~~~~~-----~~~ 278 (352)
-..++|+|..|.|||||.+.++..... ...++...-.....+.+++...+..-+... .+... ...
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999875321 122332222333566666665554422110 01111 122
Q ss_pred HHHHHHHhc--CCceEEEEecCCCCCCccChhHHHHhhccCC-CCcEEEEecCChHHHHHhC
Q 036619 279 LMSRIQSSI--KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-HGSKILVTTRNESVARMMG 337 (352)
Q Consensus 279 ~~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-~gs~IivTTR~~~va~~~~ 337 (352)
....+.+++ +++..||++||+-..- .....+...+.... .|--..+.|....+....+
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~a-~A~reisl~~~e~p~~G~~~~~~s~l~~L~ERag 293 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRFA-DARRSVDIAVKELPIGGKTLLMESYMKKLLERSG 293 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHHH-HHHHHHHHHhcCCCCCCeeeeeeccchhHHHHhc
Confidence 223344444 5899999999994321 12333333321111 2555666666666666544
No 494
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.15 E-value=0.045 Score=50.00 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=56.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
-..+.|+|..|.|||||++.+.... .... .++.+.-........ .....-...........-...+.+...|+..
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~--~~~~-~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI--PKDE-RIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC--Cccc-cEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhcCC
Confidence 4688999999999999999888632 1111 122221111111000 0000000000000011112344556667777
Q ss_pred eEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHHH
Q 036619 291 KNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVAR 334 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 334 (352)
.=.|++|.+... +.|.. ...+..+..| ++.|+...+.+.
T Consensus 219 pd~ii~gE~r~~--e~~~~-l~a~~~g~~~--~i~T~Ha~~~~~ 257 (308)
T TIGR02788 219 PDRIILGELRGD--EAFDF-IRAVNTGHPG--SITTLHAGSPEE 257 (308)
T ss_pred CCeEEEeccCCH--HHHHH-HHHHhcCCCe--EEEEEeCCCHHH
Confidence 778999999653 44543 3333333222 577777765444
No 495
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.15 E-value=0.016 Score=47.58 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=17.3
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (352)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999864
No 496
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.15 E-value=0.2 Score=46.16 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|..|.|||||.+.++..
T Consensus 108 Ge~v~IvG~~GsGKSTLl~~L~g~ 131 (329)
T PRK14257 108 NKVTAFIGPSGCGKSTFLRNLNQL 131 (329)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 367999999999999999999864
No 497
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.15 E-value=0.035 Score=48.00 Aligned_cols=52 Identities=19% Similarity=0.095 Sum_probs=32.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhh-----hhccCCeEEEEEeCCCCCHHHHHHHHHH
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDE-----VKRNFEKVIWVCVSDTFDQIRIAKAIIE 264 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~-----~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 264 (352)
+..|+|++|.||||++..+...-. ....-+..+-++...+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 788999999999987766655320 1233445555666666667777777666
No 498
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.14 E-value=0.17 Score=47.17 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|.|||||.+.+..-
T Consensus 32 Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 32 GTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCC
Confidence 358999999999999999999863
No 499
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.13 E-value=0.053 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.++.|.|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7889999999999999999864
No 500
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.13 E-value=0.098 Score=43.46 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=54.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhh----h----------ccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-----C
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEV----K----------RNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS-----A 270 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~----------~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~ 270 (352)
.-.-|.|+|+.|+|||||...+...... . ..+...+| .++.......++.........- .
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~-d~gG~~~~~~~w~~y~~~~~~iIfVvDs 91 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIW-DLGGQESFRPLWKSYFQNADGIIFVVDS 91 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEE-EESSSGGGGGGGGGGHTTESEEEEEEET
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEE-eccccccccccceeeccccceeEEEEec
Confidence 3456689999999999999998864211 0 11222333 3444444444444444332210 1
Q ss_pred CCcccHHHHHHHHHHhc-----CCceEEEEecCCCCCCccChhHHHHhh
Q 036619 271 SGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCL 314 (352)
Q Consensus 271 ~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l 314 (352)
.+...+.+....|.+.+ ++.++||++=-.+..+......+...+
T Consensus 92 sd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l 140 (175)
T PF00025_consen 92 SDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYL 140 (175)
T ss_dssp TGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHT
T ss_pred ccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhh
Confidence 12223444455555543 467777776544333333455566554
Done!