Query 036619
Match_columns 352
No_of_seqs 315 out of 1941
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 05:47:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 5.4E-28 1.9E-32 236.5 11.1 155 187-352 131-298 (549)
2 1vt4_I APAF-1 related killer D 99.9 9.3E-24 3.2E-28 212.6 8.0 154 185-352 129-303 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 6.1E-22 2.1E-26 210.8 11.3 159 181-352 121-291 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.8 2E-20 6.7E-25 184.8 9.5 155 183-352 123-291 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.8 3.6E-19 1.2E-23 136.5 7.2 80 4-88 1-82 (115)
6 1w5s_A Origin recognition comp 99.5 1.4E-13 4.7E-18 129.4 10.1 168 184-351 22-219 (412)
7 2qen_A Walker-type ATPase; unk 99.3 2.2E-12 7.5E-17 118.3 7.6 154 182-351 10-207 (350)
8 2qby_B CDC6 homolog 3, cell di 99.3 6.4E-12 2.2E-16 116.9 10.5 166 184-351 20-201 (384)
9 1fnn_A CDC6P, cell division co 99.3 2.2E-11 7.5E-16 113.4 13.2 166 184-351 17-197 (389)
10 2fna_A Conserved hypothetical 99.3 2.5E-11 8.6E-16 111.4 12.0 152 183-351 12-213 (357)
11 2v1u_A Cell division control p 99.3 2.3E-11 8E-16 113.0 11.7 166 184-351 19-205 (387)
12 2qby_A CDC6 homolog 1, cell di 99.2 1.1E-11 3.6E-16 115.2 8.0 164 184-351 20-201 (386)
13 2chg_A Replication factor C sm 99.1 5.2E-10 1.8E-14 95.3 12.1 146 184-351 17-165 (226)
14 1njg_A DNA polymerase III subu 99.1 4.8E-10 1.7E-14 96.8 10.7 156 184-351 23-189 (250)
15 1sxj_B Activator 1 37 kDa subu 98.9 2.5E-09 8.4E-14 96.8 8.7 146 184-351 21-170 (323)
16 3te6_A Regulatory protein SIR3 98.9 1.4E-08 4.6E-13 91.5 11.9 126 184-314 20-154 (318)
17 1jbk_A CLPB protein; beta barr 98.9 2.1E-08 7.1E-13 83.1 11.7 146 184-351 22-189 (195)
18 1iqp_A RFCS; clamp loader, ext 98.7 1.5E-08 5.3E-13 91.7 6.6 143 184-351 25-173 (327)
19 2p65_A Hypothetical protein PF 98.6 2.1E-07 7.1E-12 76.7 8.7 45 184-234 22-66 (187)
20 1jr3_A DNA polymerase III subu 98.5 2.7E-07 9.3E-12 85.1 9.9 156 184-351 16-182 (373)
21 2chq_A Replication factor C sm 98.5 7.9E-08 2.7E-12 86.6 4.9 143 184-351 17-165 (319)
22 3ec2_A DNA replication protein 98.5 6.1E-07 2.1E-11 74.0 8.9 103 211-330 38-143 (180)
23 2w58_A DNAI, primosome compone 98.3 9.3E-07 3.2E-11 74.2 7.7 100 212-329 55-158 (202)
24 3syl_A Protein CBBX; photosynt 98.3 1.5E-06 5.3E-11 77.9 9.6 150 185-350 32-207 (309)
25 3n70_A Transport activator; si 98.3 3.8E-07 1.3E-11 72.5 4.8 114 185-329 2-115 (145)
26 3bos_A Putative DNA replicatio 98.3 3.4E-07 1.2E-11 78.8 4.6 114 211-351 52-178 (242)
27 3pvs_A Replication-associated 98.3 1.9E-06 6.6E-11 81.4 9.3 135 184-351 26-169 (447)
28 2z4s_A Chromosomal replication 98.3 1.5E-06 5.3E-11 82.1 8.5 123 211-350 130-266 (440)
29 2gno_A DNA polymerase III, gam 98.3 3.7E-06 1.3E-10 75.4 10.1 138 189-351 2-143 (305)
30 1sxj_D Activator 1 41 kDa subu 98.2 4.7E-06 1.6E-10 76.1 10.1 155 184-350 37-195 (353)
31 1sxj_E Activator 1 40 kDa subu 98.2 1.3E-06 4.6E-11 79.9 6.0 157 184-351 14-197 (354)
32 3u61_B DNA polymerase accessor 98.2 4.2E-06 1.4E-10 75.7 8.5 137 184-350 26-168 (324)
33 3co5_A Putative two-component 98.2 7.8E-07 2.7E-11 70.5 2.9 110 185-329 5-115 (143)
34 1sxj_A Activator 1 95 kDa subu 98.1 6.7E-06 2.3E-10 79.3 9.6 157 184-350 39-212 (516)
35 3h4m_A Proteasome-activating n 98.1 2.3E-06 7.9E-11 75.8 5.8 51 184-234 17-74 (285)
36 2kjq_A DNAA-related protein; s 98.1 3.5E-06 1.2E-10 67.2 6.2 103 211-345 36-148 (149)
37 3uk6_A RUVB-like 2; hexameric 98.1 4.6E-06 1.6E-10 76.8 7.4 47 184-234 44-93 (368)
38 1hqc_A RUVB; extended AAA-ATPa 98.1 3.4E-06 1.2E-10 76.1 6.0 140 184-351 12-172 (324)
39 1l8q_A Chromosomal replication 98.1 1.1E-05 3.8E-10 72.9 9.4 121 211-350 37-169 (324)
40 1a5t_A Delta prime, HOLB; zinc 98.1 2.6E-05 8.8E-10 70.9 11.8 137 190-351 8-171 (334)
41 2qz4_A Paraplegin; AAA+, SPG7, 98.1 1.7E-05 5.9E-10 69.1 10.2 51 184-234 6-62 (262)
42 1qvr_A CLPB protein; coiled co 98.1 1.1E-05 3.6E-10 82.7 9.6 45 184-234 170-214 (854)
43 1d2n_A N-ethylmaleimide-sensit 98.1 1.7E-05 5.8E-10 69.8 9.7 47 185-234 34-87 (272)
44 1sxj_C Activator 1 40 kDa subu 98.0 1.1E-05 3.9E-10 73.4 8.7 139 184-350 25-172 (340)
45 3pfi_A Holliday junction ATP-d 98.0 1.1E-05 3.7E-10 73.3 8.1 139 184-351 29-188 (338)
46 4fcw_A Chaperone protein CLPB; 97.9 2E-05 6.7E-10 70.7 7.0 124 184-316 17-145 (311)
47 2cvh_A DNA repair and recombin 97.9 0.00017 5.8E-09 60.9 12.4 87 210-302 19-117 (220)
48 2bjv_A PSP operon transcriptio 97.9 1.7E-05 5.8E-10 69.5 6.0 133 184-329 6-150 (265)
49 1ofh_A ATP-dependent HSL prote 97.8 6.3E-05 2.2E-09 67.1 9.5 51 184-234 15-73 (310)
50 3eie_A Vacuolar protein sortin 97.8 8E-05 2.7E-09 67.2 9.9 51 184-234 18-74 (322)
51 1ojl_A Transcriptional regulat 97.8 2.5E-05 8.7E-10 69.9 6.5 132 184-329 2-146 (304)
52 3pxg_A Negative regulator of g 97.8 2.9E-05 1E-09 73.9 7.1 45 184-234 180-224 (468)
53 3cf0_A Transitional endoplasmi 97.7 0.00014 4.9E-09 64.9 10.1 51 184-234 15-72 (301)
54 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00017 5.8E-09 72.9 10.8 45 184-234 186-230 (758)
55 3b9p_A CG5977-PA, isoform A; A 97.6 0.00039 1.3E-08 61.7 11.5 51 184-234 21-77 (297)
56 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.00093 3.2E-08 60.2 13.6 51 184-234 12-68 (322)
57 3d8b_A Fidgetin-like protein 1 97.6 0.00012 4.1E-09 67.1 7.7 51 184-234 84-140 (357)
58 2qgz_A Helicase loader, putati 97.6 7.2E-05 2.5E-09 67.1 5.6 38 211-249 152-189 (308)
59 3pxi_A Negative regulator of g 97.6 0.0002 6.7E-09 72.4 9.4 124 184-328 491-628 (758)
60 2vhj_A Ntpase P4, P4; non- hyd 97.5 4.5E-05 1.5E-09 68.1 3.8 70 211-302 123-194 (331)
61 2qp9_X Vacuolar protein sortin 97.5 0.00018 6.3E-09 65.8 7.6 51 184-234 51-107 (355)
62 2zan_A Vacuolar protein sortin 97.5 0.0005 1.7E-08 64.9 10.7 51 184-234 134-190 (444)
63 1n0w_A DNA repair protein RAD5 97.5 0.0004 1.4E-08 59.5 9.2 90 211-301 24-130 (243)
64 3vfd_A Spastin; ATPase, microt 97.4 0.0004 1.4E-08 64.3 9.0 51 184-234 115-171 (389)
65 3hu3_A Transitional endoplasmi 97.4 0.0002 6.9E-09 68.3 6.9 51 184-234 204-261 (489)
66 3pxi_A Negative regulator of g 97.4 0.00021 7E-09 72.3 6.3 45 184-234 180-224 (758)
67 3t15_A Ribulose bisphosphate c 97.3 0.00049 1.7E-08 61.1 7.9 26 209-234 34-59 (293)
68 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.0009 3.1E-08 56.7 8.9 115 211-330 23-168 (235)
69 1qvr_A CLPB protein; coiled co 97.3 0.0003 1E-08 72.0 6.6 135 185-329 559-710 (854)
70 2b8t_A Thymidine kinase; deoxy 97.3 0.00033 1.1E-08 59.5 5.8 110 211-328 12-124 (223)
71 4b4t_L 26S protease subunit RP 97.3 0.0031 1E-07 59.0 12.6 51 184-234 181-238 (437)
72 2ce7_A Cell division protein F 97.2 0.00096 3.3E-08 63.2 9.3 98 184-301 16-119 (476)
73 1lv7_A FTSH; alpha/beta domain 97.2 0.00076 2.6E-08 58.5 7.7 51 184-234 12-68 (257)
74 3hr8_A Protein RECA; alpha and 97.2 0.0014 4.8E-08 59.7 9.6 85 210-301 60-150 (356)
75 1v5w_A DMC1, meiotic recombina 97.2 0.0034 1.2E-07 57.0 11.8 92 209-301 120-230 (343)
76 3io5_A Recombination and repai 97.1 0.0029 1E-07 56.3 10.6 85 213-302 30-123 (333)
77 1r6b_X CLPA protein; AAA+, N-t 97.1 0.00069 2.4E-08 68.4 7.1 133 184-329 458-607 (758)
78 2i1q_A DNA repair and recombin 97.1 0.0017 5.9E-08 58.3 9.0 90 210-300 97-214 (322)
79 2zr9_A Protein RECA, recombina 97.1 0.0021 7.1E-08 58.6 9.5 85 210-301 60-150 (349)
80 1xp8_A RECA protein, recombina 97.1 0.0025 8.5E-08 58.4 9.8 84 211-301 74-163 (366)
81 3m6a_A ATP-dependent protease 97.0 0.0014 4.8E-08 63.4 8.3 51 184-234 81-131 (543)
82 2z43_A DNA repair and recombin 97.0 0.0029 9.9E-08 57.0 9.9 90 211-301 107-214 (324)
83 1g5t_A COB(I)alamin adenosyltr 97.0 0.0013 4.5E-08 54.4 6.8 117 212-330 29-163 (196)
84 3lw7_A Adenylate kinase relate 97.0 0.0029 9.8E-08 50.9 8.8 20 212-231 2-21 (179)
85 2c9o_A RUVB-like 1; hexameric 96.9 0.002 6.9E-08 60.9 8.1 47 184-234 37-86 (456)
86 1u94_A RECA protein, recombina 96.9 0.0019 6.6E-08 58.9 7.5 85 210-301 62-152 (356)
87 1rz3_A Hypothetical protein rb 96.9 0.001 3.5E-08 55.4 5.2 43 189-234 3-45 (201)
88 2px0_A Flagellar biosynthesis 96.9 0.0048 1.6E-07 54.8 9.7 25 210-234 104-128 (296)
89 4b4t_K 26S protease regulatory 96.9 0.0028 9.6E-08 59.1 8.4 51 184-234 172-229 (428)
90 4b4t_J 26S protease regulatory 96.9 0.0023 7.9E-08 59.0 7.6 51 184-234 148-205 (405)
91 1cr0_A DNA primase/helicase; R 96.8 0.0056 1.9E-07 54.2 9.4 39 211-250 35-73 (296)
92 4b4t_M 26S protease regulatory 96.8 0.0021 7.3E-08 60.0 6.6 51 184-234 181-238 (434)
93 1um8_A ATP-dependent CLP prote 96.7 0.0038 1.3E-07 57.4 8.2 24 211-234 72-95 (376)
94 1odf_A YGR205W, hypothetical 3 96.7 0.013 4.3E-07 51.8 11.2 55 209-263 29-84 (290)
95 3cf2_A TER ATPase, transitiona 96.7 0.0038 1.3E-07 62.8 8.2 98 184-301 204-308 (806)
96 2pze_A Cystic fibrosis transme 96.7 0.019 6.5E-07 48.8 11.5 24 211-234 34-57 (229)
97 3c8u_A Fructokinase; YP_612366 96.6 0.0018 6E-08 54.3 4.7 38 193-234 8-45 (208)
98 1mv5_A LMRA, multidrug resista 96.6 0.019 6.4E-07 49.3 11.4 23 211-233 28-50 (243)
99 2dhr_A FTSH; AAA+ protein, hex 96.6 0.012 4E-07 56.1 10.8 51 184-234 31-87 (499)
100 4b4t_H 26S protease regulatory 96.6 0.0023 8E-08 59.9 5.7 51 184-234 209-266 (467)
101 1ypw_A Transitional endoplasmi 96.6 0.0026 8.9E-08 64.5 6.3 51 184-234 204-261 (806)
102 1jr3_D DNA polymerase III, del 96.5 0.026 8.8E-07 51.0 12.3 119 211-351 18-146 (343)
103 1pzn_A RAD51, DNA repair and r 96.5 0.013 4.4E-07 53.3 10.1 92 209-301 129-242 (349)
104 2orw_A Thymidine kinase; TMTK, 96.5 0.00084 2.9E-08 55.3 1.6 107 212-329 4-112 (184)
105 3lda_A DNA repair protein RAD5 96.5 0.015 5E-07 53.9 10.1 91 210-301 177-284 (400)
106 1in4_A RUVB, holliday junction 96.4 0.0016 5.3E-08 59.0 3.4 50 184-234 25-74 (334)
107 3tqc_A Pantothenate kinase; bi 96.4 0.01 3.6E-07 53.1 8.7 45 187-233 70-114 (321)
108 1zp6_A Hypothetical protein AT 96.4 0.0022 7.4E-08 52.7 3.8 24 211-234 9-32 (191)
109 2x8a_A Nuclear valosin-contain 96.3 0.008 2.7E-07 52.7 7.4 21 214-234 47-67 (274)
110 1ly1_A Polynucleotide kinase; 96.3 0.0025 8.7E-08 51.6 3.5 22 212-233 3-24 (181)
111 3kb2_A SPBC2 prophage-derived 96.3 0.0022 7.5E-08 51.6 3.1 23 212-234 2-24 (173)
112 2r6a_A DNAB helicase, replicat 96.2 0.56 1.9E-05 44.0 20.0 89 211-302 203-325 (454)
113 3vaa_A Shikimate kinase, SK; s 96.2 0.0025 8.5E-08 52.9 3.2 24 211-234 25-48 (199)
114 1qhx_A CPT, protein (chloramph 96.2 0.0025 8.5E-08 51.7 3.1 23 212-234 4-26 (178)
115 1kgd_A CASK, peripheral plasma 96.2 0.0028 9.4E-08 51.8 3.3 24 211-234 5-28 (180)
116 4b4t_I 26S protease regulatory 96.2 0.0039 1.3E-07 57.9 4.6 51 184-234 182-239 (437)
117 1sky_E F1-ATPase, F1-ATP synth 96.2 0.015 5.1E-07 54.6 8.4 98 196-299 141-254 (473)
118 3uie_A Adenylyl-sulfate kinase 96.2 0.0035 1.2E-07 52.1 3.8 25 210-234 24-48 (200)
119 3dm5_A SRP54, signal recogniti 96.1 0.034 1.2E-06 51.9 10.7 25 210-234 99-123 (443)
120 3upu_A ATP-dependent DNA helic 96.1 0.0062 2.1E-07 57.6 5.8 22 213-234 47-68 (459)
121 2xxa_A Signal recognition part 96.1 0.06 2.1E-06 50.3 12.4 26 209-234 98-123 (433)
122 3hws_A ATP-dependent CLP prote 96.1 0.0042 1.5E-07 56.7 4.4 50 185-234 16-74 (363)
123 2rhm_A Putative kinase; P-loop 96.1 0.0039 1.3E-07 51.1 3.9 25 210-234 4-28 (193)
124 3jvv_A Twitching mobility prot 96.1 0.0039 1.3E-07 56.9 4.1 113 211-334 123-235 (356)
125 1vma_A Cell division protein F 96.1 0.024 8.2E-07 50.4 9.2 26 209-234 102-127 (306)
126 1kag_A SKI, shikimate kinase I 96.1 0.0027 9.1E-08 51.2 2.7 23 212-234 5-27 (173)
127 3ice_A Transcription terminati 96.1 0.008 2.7E-07 55.0 5.9 97 194-299 162-270 (422)
128 1knq_A Gluconate kinase; ALFA/ 96.1 0.0044 1.5E-07 50.1 3.9 25 210-234 7-31 (175)
129 3tui_C Methionine import ATP-b 96.1 0.022 7.7E-07 51.8 8.9 57 280-336 171-230 (366)
130 3kl4_A SRP54, signal recogniti 96.1 0.079 2.7E-06 49.4 12.8 25 210-234 96-120 (433)
131 2r44_A Uncharacterized protein 96.0 0.0036 1.2E-07 56.4 3.6 43 184-234 27-69 (331)
132 1gvn_B Zeta; postsegregational 96.0 0.0069 2.4E-07 53.5 5.3 40 194-234 17-56 (287)
133 3asz_A Uridine kinase; cytidin 96.0 0.0042 1.4E-07 51.9 3.8 25 210-234 5-29 (211)
134 3bh0_A DNAB-like replicative h 96.0 0.069 2.4E-06 47.6 11.9 51 210-264 67-117 (315)
135 1nks_A Adenylate kinase; therm 96.0 0.0042 1.4E-07 50.9 3.6 23 212-234 2-24 (194)
136 2r62_A Cell division protease 96.0 0.0027 9.2E-08 55.3 2.6 51 184-234 11-67 (268)
137 4eun_A Thermoresistant glucoki 96.0 0.0036 1.2E-07 52.0 3.2 24 211-234 29-52 (200)
138 3tr0_A Guanylate kinase, GMP k 96.0 0.0038 1.3E-07 51.8 3.3 24 211-234 7-30 (205)
139 2p5t_B PEZT; postsegregational 96.0 0.0057 2E-07 52.9 4.5 41 193-234 15-55 (253)
140 4gp7_A Metallophosphoesterase; 96.0 0.0034 1.1E-07 50.8 2.8 23 211-233 9-31 (171)
141 3tau_A Guanylate kinase, GMP k 96.0 0.004 1.4E-07 52.2 3.3 25 210-234 7-31 (208)
142 1uf9_A TT1252 protein; P-loop, 96.0 0.005 1.7E-07 51.0 3.9 25 209-233 6-30 (203)
143 3trf_A Shikimate kinase, SK; a 96.0 0.0037 1.3E-07 51.0 3.1 24 211-234 5-28 (185)
144 2ewv_A Twitching motility prot 96.0 0.019 6.3E-07 52.7 8.0 112 211-333 136-247 (372)
145 3t61_A Gluconokinase; PSI-biol 95.9 0.0033 1.1E-07 52.2 2.7 24 211-234 18-41 (202)
146 2bdt_A BH3686; alpha-beta prot 95.9 0.0046 1.6E-07 50.7 3.5 22 212-233 3-24 (189)
147 2ffh_A Protein (FFH); SRP54, s 95.9 0.039 1.3E-06 51.4 10.1 24 211-234 98-121 (425)
148 2qt1_A Nicotinamide riboside k 95.9 0.0055 1.9E-07 51.1 3.9 26 209-234 19-44 (207)
149 2j41_A Guanylate kinase; GMP, 95.9 0.0045 1.5E-07 51.4 3.3 24 211-234 6-29 (207)
150 1ye8_A Protein THEP1, hypothet 95.9 0.0046 1.6E-07 50.5 3.3 23 213-235 2-24 (178)
151 1ukz_A Uridylate kinase; trans 95.9 0.0057 2E-07 50.7 3.8 26 209-234 13-38 (203)
152 3umf_A Adenylate kinase; rossm 95.9 0.0054 1.8E-07 51.8 3.6 26 209-234 27-52 (217)
153 3e70_C DPA, signal recognition 95.8 0.049 1.7E-06 48.9 10.1 26 209-234 127-152 (328)
154 1tev_A UMP-CMP kinase; ploop, 95.8 0.0054 1.8E-07 50.3 3.5 24 211-234 3-26 (196)
155 3a00_A Guanylate kinase, GMP k 95.8 0.0037 1.3E-07 51.3 2.4 23 212-234 2-24 (186)
156 2ze6_A Isopentenyl transferase 95.8 0.0054 1.8E-07 53.1 3.5 23 212-234 2-24 (253)
157 1kht_A Adenylate kinase; phosp 95.8 0.0052 1.8E-07 50.2 3.3 23 212-234 4-26 (192)
158 2if2_A Dephospho-COA kinase; a 95.8 0.0054 1.9E-07 50.9 3.4 22 212-233 2-23 (204)
159 2c95_A Adenylate kinase 1; tra 95.8 0.0055 1.9E-07 50.4 3.4 24 211-234 9-32 (196)
160 3nbx_X ATPase RAVA; AAA+ ATPas 95.8 0.0063 2.1E-07 58.0 4.2 43 184-234 22-64 (500)
161 1uj2_A Uridine-cytidine kinase 95.8 0.0058 2E-07 52.8 3.6 26 209-234 20-45 (252)
162 2jaq_A Deoxyguanosine kinase; 95.8 0.0053 1.8E-07 50.8 3.3 22 213-234 2-23 (205)
163 1cke_A CK, MSSA, protein (cyti 95.8 0.0052 1.8E-07 51.9 3.3 23 212-234 6-28 (227)
164 3iij_A Coilin-interacting nucl 95.8 0.0047 1.6E-07 50.2 2.8 24 211-234 11-34 (180)
165 1g8p_A Magnesium-chelatase 38 95.7 0.0044 1.5E-07 56.1 2.8 45 184-234 24-68 (350)
166 1lvg_A Guanylate kinase, GMP k 95.7 0.0042 1.4E-07 51.6 2.5 24 211-234 4-27 (198)
167 1y63_A LMAJ004144AAA protein; 95.7 0.0059 2E-07 49.9 3.3 25 210-234 9-33 (184)
168 2qor_A Guanylate kinase; phosp 95.7 0.0045 1.5E-07 51.6 2.6 24 211-234 12-35 (204)
169 1zuh_A Shikimate kinase; alpha 95.7 0.0055 1.9E-07 49.2 3.0 26 209-234 5-30 (168)
170 3cm0_A Adenylate kinase; ATP-b 95.7 0.0071 2.4E-07 49.3 3.8 24 211-234 4-27 (186)
171 4a1f_A DNAB helicase, replicat 95.7 0.034 1.2E-06 50.1 8.5 50 211-264 46-95 (338)
172 1jjv_A Dephospho-COA kinase; P 95.7 0.0064 2.2E-07 50.6 3.5 22 212-233 3-24 (206)
173 3tlx_A Adenylate kinase 2; str 95.7 0.0082 2.8E-07 51.6 4.2 25 210-234 28-52 (243)
174 2bbw_A Adenylate kinase 4, AK4 95.7 0.0056 1.9E-07 52.6 3.2 23 211-233 27-49 (246)
175 2yvu_A Probable adenylyl-sulfa 95.7 0.0076 2.6E-07 49.3 3.8 25 210-234 12-36 (186)
176 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0067 2.3E-07 52.7 3.6 24 211-234 4-27 (260)
177 1qf9_A UMP/CMP kinase, protein 95.7 0.0086 2.9E-07 48.9 4.1 24 211-234 6-29 (194)
178 2cdn_A Adenylate kinase; phosp 95.7 0.0071 2.4E-07 50.1 3.6 25 210-234 19-43 (201)
179 3llm_A ATP-dependent RNA helic 95.6 0.098 3.4E-06 44.3 10.9 90 212-302 77-188 (235)
180 3aez_A Pantothenate kinase; tr 95.6 0.0072 2.5E-07 54.0 3.7 26 209-234 88-113 (312)
181 2plr_A DTMP kinase, probable t 95.6 0.0075 2.6E-07 50.2 3.6 24 211-234 4-27 (213)
182 2yhs_A FTSY, cell division pro 95.6 0.043 1.5E-06 51.9 9.1 26 209-234 291-316 (503)
183 1via_A Shikimate kinase; struc 95.6 0.0056 1.9E-07 49.5 2.7 23 212-234 5-27 (175)
184 1xjc_A MOBB protein homolog; s 95.6 0.0067 2.3E-07 49.0 3.1 25 210-234 3-27 (169)
185 2r8r_A Sensor protein; KDPD, P 95.6 0.002 6.9E-08 54.5 -0.0 104 213-330 8-127 (228)
186 1ex7_A Guanylate kinase; subst 95.6 0.0056 1.9E-07 50.3 2.7 22 213-234 3-24 (186)
187 1fx0_B ATP synthase beta chain 95.6 0.046 1.6E-06 51.5 9.1 99 195-299 154-275 (498)
188 1znw_A Guanylate kinase, GMP k 95.6 0.0068 2.3E-07 50.6 3.2 24 211-234 20-43 (207)
189 2bwj_A Adenylate kinase 5; pho 95.6 0.0068 2.3E-07 49.9 3.2 24 211-234 12-35 (199)
190 2jeo_A Uridine-cytidine kinase 95.6 0.008 2.7E-07 51.6 3.7 25 210-234 24-48 (245)
191 1j8m_F SRP54, signal recogniti 95.5 0.059 2E-06 47.7 9.3 24 211-234 98-121 (297)
192 1aky_A Adenylate kinase; ATP:A 95.5 0.0071 2.4E-07 50.9 3.2 24 211-234 4-27 (220)
193 2iyv_A Shikimate kinase, SK; t 95.5 0.0052 1.8E-07 50.1 2.2 22 213-234 4-25 (184)
194 1htw_A HI0065; nucleotide-bind 95.5 0.0095 3.3E-07 47.6 3.7 24 211-234 33-56 (158)
195 2vli_A Antibiotic resistance p 95.5 0.005 1.7E-07 50.0 2.1 24 211-234 5-28 (183)
196 2ga8_A Hypothetical 39.9 kDa p 95.5 0.012 4.3E-07 53.2 4.8 43 190-234 5-47 (359)
197 1q57_A DNA primase/helicase; d 95.5 0.056 1.9E-06 51.6 9.6 89 210-301 241-365 (503)
198 2pez_A Bifunctional 3'-phospho 95.5 0.0094 3.2E-07 48.4 3.6 25 210-234 4-28 (179)
199 3fwy_A Light-independent proto 95.5 0.0084 2.9E-07 53.6 3.6 41 209-251 46-86 (314)
200 2grj_A Dephospho-COA kinase; T 95.5 0.011 3.6E-07 48.9 3.9 26 209-234 10-35 (192)
201 3ney_A 55 kDa erythrocyte memb 95.5 0.0092 3.1E-07 49.5 3.5 25 210-234 18-42 (197)
202 1nn5_A Similar to deoxythymidy 95.4 0.0089 3E-07 49.9 3.5 24 211-234 9-32 (215)
203 1e6c_A Shikimate kinase; phosp 95.4 0.0065 2.2E-07 48.9 2.4 23 212-234 3-25 (173)
204 1rj9_A FTSY, signal recognitio 95.4 0.0084 2.9E-07 53.4 3.4 25 210-234 101-125 (304)
205 2hf9_A Probable hydrogenase ni 95.4 0.014 4.7E-07 49.2 4.6 25 210-234 37-61 (226)
206 3cmu_A Protein RECA, recombina 95.4 0.032 1.1E-06 61.3 8.3 84 210-300 1426-1515(2050)
207 2j37_W Signal recognition part 95.4 0.17 6E-06 48.1 12.5 26 209-234 99-124 (504)
208 2ck3_D ATP synthase subunit be 95.4 0.096 3.3E-06 49.1 10.5 65 195-265 142-207 (482)
209 1z6g_A Guanylate kinase; struc 95.4 0.0068 2.3E-07 51.1 2.6 24 211-234 23-46 (218)
210 2pt5_A Shikimate kinase, SK; a 95.4 0.0092 3.1E-07 47.7 3.2 22 213-234 2-23 (168)
211 2pbr_A DTMP kinase, thymidylat 95.4 0.0091 3.1E-07 48.9 3.3 22 213-234 2-23 (195)
212 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.034 1.1E-06 50.1 7.2 107 212-333 172-278 (330)
213 1zu4_A FTSY; GTPase, signal re 95.3 0.067 2.3E-06 47.8 9.1 26 209-234 103-128 (320)
214 1zd8_A GTP:AMP phosphotransfer 95.3 0.0091 3.1E-07 50.5 3.2 24 211-234 7-30 (227)
215 4e22_A Cytidylate kinase; P-lo 95.3 0.0091 3.1E-07 51.6 3.2 23 211-233 27-49 (252)
216 1sq5_A Pantothenate kinase; P- 95.3 0.019 6.6E-07 51.1 5.5 25 209-233 78-102 (308)
217 2wwf_A Thymidilate kinase, put 95.3 0.0096 3.3E-07 49.6 3.3 24 211-234 10-33 (212)
218 2f6r_A COA synthase, bifunctio 95.3 0.011 3.9E-07 51.9 3.8 25 209-233 73-97 (281)
219 1gtv_A TMK, thymidylate kinase 95.3 0.0055 1.9E-07 51.2 1.7 22 213-234 2-23 (214)
220 4a74_A DNA repair and recombin 95.3 0.011 3.7E-07 49.8 3.6 48 210-257 24-75 (231)
221 1ixz_A ATP-dependent metallopr 95.3 0.009 3.1E-07 51.5 3.0 21 214-234 52-72 (254)
222 2q6t_A DNAB replication FORK h 95.3 0.11 3.7E-06 48.8 10.6 88 211-301 200-321 (444)
223 1s96_A Guanylate kinase, GMP k 95.2 0.01 3.4E-07 50.2 3.2 25 210-234 15-39 (219)
224 1m7g_A Adenylylsulfate kinase; 95.2 0.013 4.4E-07 49.0 3.7 24 211-234 25-48 (211)
225 1ls1_A Signal recognition part 95.2 0.094 3.2E-06 46.3 9.5 24 211-234 98-121 (295)
226 2ehv_A Hypothetical protein PH 95.2 0.01 3.6E-07 50.7 3.2 39 211-250 30-68 (251)
227 3b9q_A Chloroplast SRP recepto 95.2 0.012 4.2E-07 52.3 3.7 25 210-234 99-123 (302)
228 2wsm_A Hydrogenase expression/ 95.2 0.015 5.3E-07 48.6 4.2 25 210-234 29-53 (221)
229 2ged_A SR-beta, signal recogni 95.2 0.016 5.6E-07 47.2 4.2 26 209-234 46-71 (193)
230 1zak_A Adenylate kinase; ATP:A 95.2 0.0097 3.3E-07 50.2 2.9 24 211-234 5-28 (222)
231 2v54_A DTMP kinase, thymidylat 95.2 0.012 4E-07 48.7 3.3 24 211-234 4-27 (204)
232 3fb4_A Adenylate kinase; psych 95.2 0.012 4E-07 49.3 3.3 22 213-234 2-23 (216)
233 1vht_A Dephospho-COA kinase; s 95.2 0.014 4.7E-07 49.0 3.8 23 211-233 4-26 (218)
234 2z0h_A DTMP kinase, thymidylat 95.1 0.012 4.1E-07 48.3 3.3 22 213-234 2-23 (197)
235 2i3b_A HCR-ntpase, human cance 95.1 0.0099 3.4E-07 49.0 2.7 23 213-235 3-25 (189)
236 2onk_A Molybdate/tungstate ABC 95.1 0.012 4E-07 50.5 3.2 24 209-233 23-46 (240)
237 3l0o_A Transcription terminati 95.1 0.059 2E-06 49.2 7.9 56 191-252 160-216 (427)
238 2pcj_A ABC transporter, lipopr 95.1 0.012 4E-07 50.0 3.1 52 282-333 150-203 (224)
239 3p32_A Probable GTPase RV1496/ 95.1 0.021 7.2E-07 52.0 5.1 38 193-234 65-102 (355)
240 1tf7_A KAIC; homohexamer, hexa 95.1 0.021 7.1E-07 54.9 5.3 116 210-330 280-417 (525)
241 2f1r_A Molybdopterin-guanine d 95.1 0.0075 2.6E-07 48.8 1.8 23 212-234 3-25 (171)
242 3tif_A Uncharacterized ABC tra 95.1 0.012 3.9E-07 50.4 3.0 53 282-334 155-210 (235)
243 3dl0_A Adenylate kinase; phosp 95.1 0.013 4.4E-07 49.1 3.3 22 213-234 2-23 (216)
244 2r2a_A Uncharacterized protein 95.0 0.042 1.4E-06 45.6 6.2 22 211-232 5-26 (199)
245 3be4_A Adenylate kinase; malar 95.0 0.013 4.5E-07 49.2 3.1 24 211-234 5-28 (217)
246 3e1s_A Exodeoxyribonuclease V, 94.9 0.019 6.4E-07 55.9 4.5 23 212-234 205-227 (574)
247 3b85_A Phosphate starvation-in 94.9 0.011 3.9E-07 49.4 2.6 23 212-234 23-45 (208)
248 3lnc_A Guanylate kinase, GMP k 94.9 0.0089 3E-07 50.8 2.0 22 211-232 27-48 (231)
249 1iy2_A ATP-dependent metallopr 94.9 0.013 4.4E-07 51.3 3.0 50 184-234 40-96 (278)
250 3sr0_A Adenylate kinase; phosp 94.9 0.014 5E-07 48.7 3.1 22 213-234 2-23 (206)
251 3b5x_A Lipid A export ATP-bind 94.9 0.14 4.9E-06 49.7 10.6 24 211-234 369-392 (582)
252 2vp4_A Deoxynucleoside kinase; 94.8 0.016 5.5E-07 49.2 3.3 26 209-234 18-43 (230)
253 2cbz_A Multidrug resistance-as 94.8 0.014 4.9E-07 49.9 3.0 24 211-234 31-54 (237)
254 1b0u_A Histidine permease; ABC 94.8 0.014 4.8E-07 50.7 3.0 23 211-233 32-54 (262)
255 3gfo_A Cobalt import ATP-bindi 94.8 0.014 4.8E-07 51.1 3.0 23 211-233 34-56 (275)
256 2og2_A Putative signal recogni 94.8 0.017 5.9E-07 52.5 3.7 25 210-234 156-180 (359)
257 3nwj_A ATSK2; P loop, shikimat 94.8 0.013 4.3E-07 50.6 2.5 22 212-233 49-70 (250)
258 1ji0_A ABC transporter; ATP bi 94.8 0.015 5.2E-07 49.8 3.0 23 211-233 32-54 (240)
259 3ake_A Cytidylate kinase; CMP 94.8 0.017 5.9E-07 47.8 3.3 22 213-234 4-25 (208)
260 3r20_A Cytidylate kinase; stru 94.7 0.016 5.6E-07 49.3 3.1 24 211-234 9-32 (233)
261 1g6h_A High-affinity branched- 94.7 0.015 5.3E-07 50.3 3.0 23 211-233 33-55 (257)
262 1oix_A RAS-related protein RAB 94.7 0.019 6.4E-07 47.1 3.4 24 211-234 29-52 (191)
263 2d2e_A SUFC protein; ABC-ATPas 94.7 0.017 5.8E-07 49.8 3.2 23 211-233 29-51 (250)
264 4g1u_C Hemin import ATP-bindin 94.7 0.016 5.4E-07 50.5 3.0 23 211-233 37-59 (266)
265 2olj_A Amino acid ABC transpor 94.7 0.016 5.5E-07 50.4 3.0 23 211-233 50-72 (263)
266 1np6_A Molybdopterin-guanine d 94.7 0.018 6.1E-07 46.8 3.1 24 211-234 6-29 (174)
267 1e4v_A Adenylate kinase; trans 94.7 0.019 6.6E-07 48.0 3.4 22 213-234 2-23 (214)
268 2zu0_C Probable ATP-dependent 94.7 0.018 6.2E-07 50.2 3.2 53 283-335 175-229 (267)
269 1sgw_A Putative ABC transporte 94.6 0.014 4.9E-07 49.1 2.4 122 212-333 36-196 (214)
270 2ff7_A Alpha-hemolysin translo 94.6 0.017 5.9E-07 49.7 3.0 24 211-234 35-58 (247)
271 3d3q_A TRNA delta(2)-isopenten 94.6 0.02 6.9E-07 51.6 3.5 23 212-234 8-30 (340)
272 1ak2_A Adenylate kinase isoenz 94.6 0.02 6.8E-07 48.7 3.3 24 211-234 16-39 (233)
273 1vpl_A ABC transporter, ATP-bi 94.6 0.018 6E-07 49.9 3.0 23 211-233 41-63 (256)
274 2xb4_A Adenylate kinase; ATP-b 94.6 0.02 6.8E-07 48.4 3.3 22 213-234 2-23 (223)
275 3a8t_A Adenylate isopentenyltr 94.6 0.024 8.1E-07 51.0 3.8 24 211-234 40-63 (339)
276 1g41_A Heat shock protein HSLU 94.6 0.033 1.1E-06 52.0 5.0 51 184-234 15-73 (444)
277 2ixe_A Antigen peptide transpo 94.6 0.018 6.2E-07 50.3 3.0 52 283-334 167-221 (271)
278 2dr3_A UPF0273 protein PH0284; 94.5 0.041 1.4E-06 46.8 5.1 116 211-331 23-174 (247)
279 2ghi_A Transport protein; mult 94.5 0.019 6.5E-07 49.9 3.0 24 211-234 46-69 (260)
280 2qi9_C Vitamin B12 import ATP- 94.5 0.019 6.6E-07 49.4 3.0 22 212-233 27-48 (249)
281 1ltq_A Polynucleotide kinase; 94.5 0.022 7.6E-07 50.3 3.5 22 212-233 3-24 (301)
282 2eyu_A Twitching motility prot 94.5 0.025 8.5E-07 49.1 3.7 111 210-334 24-137 (261)
283 2wji_A Ferrous iron transport 94.5 0.027 9.2E-07 44.8 3.7 23 212-234 4-26 (165)
284 1yrb_A ATP(GTP)binding protein 94.5 0.027 9.2E-07 48.5 3.9 26 209-234 12-37 (262)
285 3cmu_A Protein RECA, recombina 94.5 0.09 3.1E-06 57.8 8.6 86 210-302 382-473 (2050)
286 2yz2_A Putative ABC transporte 94.5 0.02 6.8E-07 49.9 3.0 23 211-233 33-55 (266)
287 3cmw_A Protein RECA, recombina 94.5 0.081 2.8E-06 57.4 8.1 86 210-302 382-473 (1706)
288 2nq2_C Hypothetical ABC transp 94.5 0.02 6.9E-07 49.5 3.0 23 212-234 32-54 (253)
289 2iw3_A Elongation factor 3A; a 94.4 0.22 7.4E-06 51.2 10.9 122 211-336 461-611 (986)
290 2ihy_A ABC transporter, ATP-bi 94.4 0.02 6.8E-07 50.3 3.0 24 211-234 47-70 (279)
291 2zej_A Dardarin, leucine-rich 94.4 0.019 6.5E-07 46.6 2.7 22 213-234 4-25 (184)
292 2fz4_A DNA repair protein RAD2 94.4 0.12 4E-06 44.0 7.8 100 214-327 111-226 (237)
293 3crm_A TRNA delta(2)-isopenten 94.4 0.024 8.4E-07 50.6 3.5 24 211-234 5-28 (323)
294 2dyk_A GTP-binding protein; GT 94.4 0.027 9.1E-07 44.2 3.5 23 212-234 2-24 (161)
295 2f9l_A RAB11B, member RAS onco 94.4 0.021 7.3E-07 47.0 3.0 24 211-234 5-28 (199)
296 3zvl_A Bifunctional polynucleo 94.4 0.022 7.6E-07 53.0 3.4 26 209-234 256-281 (416)
297 3exa_A TRNA delta(2)-isopenten 94.4 0.027 9.2E-07 50.1 3.6 24 211-234 3-26 (322)
298 3hjn_A DTMP kinase, thymidylat 94.3 0.12 4E-06 42.7 7.4 84 213-299 2-90 (197)
299 3sop_A Neuronal-specific septi 94.3 0.025 8.5E-07 49.4 3.4 22 213-234 4-25 (270)
300 3foz_A TRNA delta(2)-isopenten 94.3 0.03 1E-06 49.7 3.9 25 210-234 9-33 (316)
301 2v9p_A Replication protein E1; 94.3 0.023 8E-07 50.4 3.1 24 210-233 125-148 (305)
302 3bgw_A DNAB-like replicative h 94.3 0.32 1.1E-05 45.6 11.1 40 210-251 196-235 (444)
303 2qe7_A ATP synthase subunit al 94.3 0.098 3.4E-06 49.3 7.5 96 195-299 151-263 (502)
304 2r9v_A ATP synthase subunit al 94.3 0.075 2.6E-06 50.2 6.6 96 195-299 164-276 (515)
305 4eaq_A DTMP kinase, thymidylat 94.3 0.052 1.8E-06 46.1 5.1 26 210-235 25-50 (229)
306 4edh_A DTMP kinase, thymidylat 94.2 0.19 6.5E-06 42.0 8.6 24 211-234 6-29 (213)
307 1a7j_A Phosphoribulokinase; tr 94.2 0.014 4.7E-07 51.6 1.5 25 210-234 4-28 (290)
308 2v3c_C SRP54, signal recogniti 94.2 0.034 1.2E-06 52.0 4.2 25 210-234 98-122 (432)
309 2wjg_A FEOB, ferrous iron tran 94.2 0.034 1.2E-06 45.0 3.8 24 211-234 7-30 (188)
310 2ce2_X GTPase HRAS; signaling 94.2 0.028 9.6E-07 44.1 3.1 22 213-234 5-26 (166)
311 1nlf_A Regulatory protein REPA 94.2 0.028 9.6E-07 49.2 3.4 118 211-333 30-184 (279)
312 2xau_A PRE-mRNA-splicing facto 94.1 0.45 1.5E-05 47.9 12.5 21 212-232 110-130 (773)
313 1q3t_A Cytidylate kinase; nucl 94.1 0.029 1E-06 47.7 3.3 25 209-233 14-38 (236)
314 1z2a_A RAS-related protein RAB 94.1 0.037 1.3E-06 43.6 3.7 24 211-234 5-28 (168)
315 1fzq_A ADP-ribosylation factor 94.1 0.044 1.5E-06 44.3 4.2 25 210-234 15-39 (181)
316 2pjz_A Hypothetical protein ST 94.0 0.027 9.3E-07 48.9 3.0 22 212-233 31-52 (263)
317 2ocp_A DGK, deoxyguanosine kin 94.0 0.038 1.3E-06 47.1 3.8 24 211-234 2-25 (241)
318 1nij_A Hypothetical protein YJ 94.0 0.033 1.1E-06 49.8 3.5 25 210-234 3-27 (318)
319 1svm_A Large T antigen; AAA+ f 94.0 0.031 1.1E-06 51.2 3.3 24 210-233 168-191 (377)
320 3vr4_D V-type sodium ATPase su 93.9 0.048 1.6E-06 50.9 4.5 98 195-299 140-257 (465)
321 2nzj_A GTP-binding protein REM 93.9 0.043 1.5E-06 43.6 3.8 24 211-234 4-27 (175)
322 3k1j_A LON protease, ATP-depen 93.9 0.037 1.3E-06 54.2 4.0 43 184-234 41-83 (604)
323 1tue_A Replication protein E1; 93.9 0.026 8.9E-07 46.9 2.4 24 211-234 58-81 (212)
324 3gqb_B V-type ATP synthase bet 93.9 0.052 1.8E-06 50.7 4.7 100 195-299 136-260 (464)
325 2bbs_A Cystic fibrosis transme 93.9 0.032 1.1E-06 49.2 3.1 24 211-234 64-87 (290)
326 2qm8_A GTPase/ATPase; G protei 93.8 0.063 2.1E-06 48.4 5.1 25 209-233 53-77 (337)
327 3ld9_A DTMP kinase, thymidylat 93.8 0.13 4.4E-06 43.4 6.7 37 209-245 19-55 (223)
328 3end_A Light-independent proto 93.8 0.089 3.1E-06 46.5 6.1 41 209-251 39-79 (307)
329 2j9r_A Thymidine kinase; TK1, 93.8 0.14 4.6E-06 42.9 6.7 108 211-329 28-137 (214)
330 3nh6_A ATP-binding cassette SU 93.8 0.023 7.9E-07 50.5 2.1 23 211-233 80-102 (306)
331 3fvq_A Fe(3+) IONS import ATP- 93.8 0.036 1.2E-06 50.4 3.4 23 211-233 30-52 (359)
332 2ck3_A ATP synthase subunit al 93.8 0.11 3.9E-06 49.0 6.8 100 195-299 151-271 (510)
333 1svi_A GTP-binding protein YSX 93.8 0.044 1.5E-06 44.6 3.6 25 210-234 22-46 (195)
334 2lkc_A Translation initiation 93.8 0.042 1.4E-06 43.9 3.4 25 210-234 7-31 (178)
335 2fn4_A P23, RAS-related protei 93.7 0.057 1.9E-06 43.1 4.2 26 209-234 7-32 (181)
336 3con_A GTPase NRAS; structural 93.7 0.036 1.2E-06 45.0 3.0 23 212-234 22-44 (190)
337 1tq4_A IIGP1, interferon-induc 93.7 0.037 1.2E-06 51.4 3.3 24 210-233 68-91 (413)
338 2erx_A GTP-binding protein DI- 93.7 0.038 1.3E-06 43.7 3.0 23 212-234 4-26 (172)
339 3kta_A Chromosome segregation 93.6 0.043 1.5E-06 44.4 3.4 22 212-233 27-48 (182)
340 1c1y_A RAS-related protein RAP 93.6 0.039 1.3E-06 43.4 3.0 23 212-234 4-26 (167)
341 3lv8_A DTMP kinase, thymidylat 93.6 0.14 4.9E-06 43.5 6.7 37 211-248 27-63 (236)
342 1z08_A RAS-related protein RAB 93.6 0.038 1.3E-06 43.7 3.0 24 211-234 6-29 (170)
343 2p67_A LAO/AO transport system 93.6 0.075 2.6E-06 48.0 5.2 25 209-233 54-78 (341)
344 1u8z_A RAS-related protein RAL 93.6 0.058 2E-06 42.4 4.0 24 211-234 4-27 (168)
345 2gj8_A MNME, tRNA modification 93.6 0.051 1.7E-06 43.6 3.7 23 212-234 5-27 (172)
346 1kao_A RAP2A; GTP-binding prot 93.6 0.04 1.4E-06 43.2 3.0 23 212-234 4-26 (167)
347 3q72_A GTP-binding protein RAD 93.6 0.04 1.4E-06 43.4 3.0 22 213-234 4-25 (166)
348 1z0j_A RAB-22, RAS-related pro 93.6 0.04 1.4E-06 43.5 3.0 24 211-234 6-29 (170)
349 1ek0_A Protein (GTP-binding pr 93.6 0.04 1.4E-06 43.4 3.0 22 213-234 5-26 (170)
350 3pqc_A Probable GTP-binding pr 93.5 0.049 1.7E-06 44.2 3.6 24 211-234 23-46 (195)
351 2aka_B Dynamin-1; fusion prote 93.5 0.091 3.1E-06 46.1 5.6 41 194-234 9-49 (299)
352 3mfy_A V-type ATP synthase alp 93.5 0.2 6.9E-06 47.8 8.0 59 195-262 216-275 (588)
353 1ky3_A GTP-binding protein YPT 93.5 0.054 1.8E-06 43.3 3.7 25 210-234 7-31 (182)
354 2hxs_A RAB-26, RAS-related pro 93.5 0.071 2.4E-06 42.5 4.4 25 210-234 5-29 (178)
355 1r8s_A ADP-ribosylation factor 93.5 0.043 1.5E-06 43.2 3.1 21 214-234 3-23 (164)
356 1z47_A CYSA, putative ABC-tran 93.5 0.041 1.4E-06 49.9 3.2 23 211-233 41-63 (355)
357 1nrj_B SR-beta, signal recogni 93.5 0.045 1.5E-06 45.5 3.3 25 210-234 11-35 (218)
358 3t1o_A Gliding protein MGLA; G 93.5 0.042 1.4E-06 44.7 3.0 24 211-234 14-37 (198)
359 2www_A Methylmalonic aciduria 93.5 0.05 1.7E-06 49.3 3.8 25 210-234 73-97 (349)
360 1m7b_A RND3/RHOE small GTP-bin 93.5 0.059 2E-06 43.5 3.9 25 210-234 6-30 (184)
361 3ihw_A Centg3; RAS, centaurin, 93.4 0.042 1.4E-06 44.6 3.0 24 211-234 20-43 (184)
362 2cxx_A Probable GTP-binding pr 93.4 0.044 1.5E-06 44.3 3.1 22 213-234 3-24 (190)
363 1wms_A RAB-9, RAB9, RAS-relate 93.4 0.044 1.5E-06 43.7 3.0 24 211-234 7-30 (177)
364 2qmh_A HPR kinase/phosphorylas 93.4 0.05 1.7E-06 45.0 3.2 23 212-234 35-57 (205)
365 3q85_A GTP-binding protein REM 93.3 0.059 2E-06 42.6 3.7 22 212-233 3-24 (169)
366 1lw7_A Transcriptional regulat 93.3 0.044 1.5E-06 50.0 3.2 24 211-234 170-193 (365)
367 3rlf_A Maltose/maltodextrin im 93.3 0.045 1.6E-06 50.1 3.2 23 211-233 29-51 (381)
368 3c5c_A RAS-like protein 12; GD 93.3 0.046 1.6E-06 44.4 3.0 24 211-234 21-44 (187)
369 2yyz_A Sugar ABC transporter, 93.3 0.046 1.6E-06 49.7 3.2 23 211-233 29-51 (359)
370 3eph_A TRNA isopentenyltransfe 93.3 0.056 1.9E-06 49.8 3.8 23 212-234 3-25 (409)
371 1r2q_A RAS-related protein RAB 93.3 0.048 1.6E-06 43.0 3.0 24 211-234 6-29 (170)
372 4tmk_A Protein (thymidylate ki 93.3 0.19 6.6E-06 42.0 6.9 52 212-264 4-55 (213)
373 2zts_A Putative uncharacterize 93.3 0.081 2.8E-06 44.9 4.7 49 211-262 30-78 (251)
374 1p5z_B DCK, deoxycytidine kina 93.3 0.032 1.1E-06 48.3 2.1 25 210-234 23-47 (263)
375 1u0j_A DNA replication protein 93.3 0.094 3.2E-06 45.4 5.0 35 196-234 93-127 (267)
376 2it1_A 362AA long hypothetical 93.3 0.047 1.6E-06 49.7 3.2 23 211-233 29-51 (362)
377 1m2o_B GTP-binding protein SAR 93.3 0.05 1.7E-06 44.4 3.2 23 212-234 24-46 (190)
378 2c61_A A-type ATP synthase non 93.2 0.066 2.3E-06 50.2 4.2 100 195-299 141-258 (469)
379 3vkw_A Replicase large subunit 93.2 0.15 5.3E-06 47.4 6.7 25 209-233 159-183 (446)
380 3thx_A DNA mismatch repair pro 93.2 0.12 4.1E-06 53.0 6.5 21 211-231 662-682 (934)
381 2ew1_A RAS-related protein RAB 93.2 0.065 2.2E-06 44.2 3.8 24 211-234 26-49 (201)
382 2bme_A RAB4A, RAS-related prot 93.2 0.051 1.7E-06 43.8 3.1 25 210-234 9-33 (186)
383 2y8e_A RAB-protein 6, GH09086P 93.2 0.052 1.8E-06 43.3 3.1 23 212-234 15-37 (179)
384 1g29_1 MALK, maltose transport 93.2 0.049 1.7E-06 49.8 3.2 23 211-233 29-51 (372)
385 2qnr_A Septin-2, protein NEDD5 93.2 0.046 1.6E-06 48.5 3.0 22 211-233 19-40 (301)
386 1fx0_A ATP synthase alpha chai 93.2 0.091 3.1E-06 49.6 5.1 82 212-299 164-264 (507)
387 4dsu_A GTPase KRAS, isoform 2B 93.2 0.05 1.7E-06 43.9 3.0 24 211-234 4-27 (189)
388 1g16_A RAS-related protein SEC 93.1 0.071 2.4E-06 42.0 3.9 23 212-234 4-26 (170)
389 1pui_A ENGB, probable GTP-bind 93.1 0.032 1.1E-06 46.2 1.8 24 211-234 26-49 (210)
390 3oaa_A ATP synthase subunit al 93.1 0.24 8E-06 46.7 7.8 94 195-299 151-263 (513)
391 1v43_A Sugar-binding transport 93.1 0.05 1.7E-06 49.7 3.2 23 211-233 37-59 (372)
392 1f6b_A SAR1; gtpases, N-termin 93.1 0.059 2E-06 44.3 3.4 23 212-234 26-48 (198)
393 3t5g_A GTP-binding protein RHE 93.1 0.06 2.1E-06 43.2 3.4 24 211-234 6-29 (181)
394 1cp2_A CP2, nitrogenase iron p 93.1 0.14 4.7E-06 44.2 5.9 38 212-251 2-39 (269)
395 2iwr_A Centaurin gamma 1; ANK 93.1 0.04 1.4E-06 44.1 2.3 24 211-234 7-30 (178)
396 1upt_A ARL1, ADP-ribosylation 93.1 0.071 2.4E-06 42.1 3.7 24 211-234 7-30 (171)
397 3vr4_A V-type sodium ATPase ca 93.0 0.24 8.3E-06 47.4 7.8 58 195-261 221-279 (600)
398 3gmt_A Adenylate kinase; ssgci 93.0 0.055 1.9E-06 45.9 3.1 25 210-234 7-31 (230)
399 1z0f_A RAB14, member RAS oncog 93.0 0.072 2.5E-06 42.4 3.7 25 210-234 14-38 (179)
400 3iev_A GTP-binding protein ERA 93.0 0.063 2.2E-06 47.7 3.6 26 209-234 8-33 (308)
401 2afh_E Nitrogenase iron protei 93.0 0.066 2.3E-06 47.0 3.7 39 211-251 2-40 (289)
402 3bc1_A RAS-related protein RAB 93.0 0.055 1.9E-06 43.7 3.0 25 210-234 10-34 (195)
403 3d31_A Sulfate/molybdate ABC t 93.0 0.041 1.4E-06 49.8 2.4 124 211-336 26-194 (348)
404 3bwd_D RAC-like GTP-binding pr 93.0 0.056 1.9E-06 43.3 3.0 23 212-234 9-31 (182)
405 3llu_A RAS-related GTP-binding 93.0 0.057 2E-06 44.2 3.1 24 211-234 20-43 (196)
406 2a9k_A RAS-related protein RAL 93.0 0.056 1.9E-06 43.4 3.0 24 211-234 18-41 (187)
407 4bas_A ADP-ribosylation factor 92.9 0.061 2.1E-06 43.8 3.3 26 209-234 15-40 (199)
408 2efe_B Small GTP-binding prote 92.9 0.056 1.9E-06 43.2 3.0 24 211-234 12-35 (181)
409 2cjw_A GTP-binding protein GEM 92.9 0.057 1.9E-06 44.2 3.0 23 211-233 6-28 (192)
410 3tw8_B RAS-related protein RAB 92.9 0.06 2.1E-06 43.0 3.1 25 210-234 8-32 (181)
411 2obl_A ESCN; ATPase, hydrolase 92.9 0.06 2E-06 48.8 3.4 24 211-234 71-94 (347)
412 3dz8_A RAS-related protein RAB 92.9 0.061 2.1E-06 43.7 3.2 24 211-234 23-46 (191)
413 2bov_A RAla, RAS-related prote 92.9 0.081 2.8E-06 43.3 4.0 25 210-234 13-37 (206)
414 1gwn_A RHO-related GTP-binding 92.9 0.059 2E-06 44.6 3.1 24 211-234 28-51 (205)
415 1ega_A Protein (GTP-binding pr 92.9 0.061 2.1E-06 47.6 3.4 25 210-234 7-31 (301)
416 2atv_A RERG, RAS-like estrogen 92.9 0.057 1.9E-06 44.1 3.0 24 211-234 28-51 (196)
417 2fg5_A RAB-22B, RAS-related pr 92.9 0.06 2.1E-06 43.9 3.1 24 211-234 23-46 (192)
418 3kkq_A RAS-related protein M-R 92.9 0.088 3E-06 42.2 4.1 25 210-234 17-41 (183)
419 2axn_A 6-phosphofructo-2-kinas 92.9 0.066 2.2E-06 51.3 3.8 25 210-234 34-58 (520)
420 3ch4_B Pmkase, phosphomevalona 92.9 0.086 2.9E-06 43.6 4.0 25 209-233 9-33 (202)
421 3cmw_A Protein RECA, recombina 92.8 0.23 7.8E-06 53.9 8.1 85 209-300 1429-1519(1706)
422 2oil_A CATX-8, RAS-related pro 92.8 0.078 2.7E-06 43.1 3.7 24 211-234 25-48 (193)
423 3oes_A GTPase rhebl1; small GT 92.8 0.063 2.1E-06 44.1 3.2 25 210-234 23-47 (201)
424 2qu8_A Putative nucleolar GTP- 92.8 0.075 2.6E-06 44.7 3.7 25 210-234 28-52 (228)
425 1xx6_A Thymidine kinase; NESG, 92.8 0.039 1.3E-06 45.4 1.8 108 211-329 8-117 (191)
426 2g6b_A RAS-related protein RAB 92.8 0.062 2.1E-06 42.9 3.0 24 211-234 10-33 (180)
427 1mh1_A RAC1; GTP-binding, GTPa 92.8 0.081 2.8E-06 42.4 3.7 24 211-234 5-28 (186)
428 3gd7_A Fusion complex of cysti 92.8 0.064 2.2E-06 49.4 3.4 23 211-233 47-69 (390)
429 3cbq_A GTP-binding protein REM 92.7 0.064 2.2E-06 44.0 3.1 23 210-232 22-44 (195)
430 1oxx_K GLCV, glucose, ABC tran 92.7 0.038 1.3E-06 50.2 1.8 56 281-336 149-207 (353)
431 2h92_A Cytidylate kinase; ross 92.7 0.055 1.9E-06 45.2 2.7 22 212-233 4-25 (219)
432 2gza_A Type IV secretion syste 92.7 0.054 1.9E-06 49.4 2.8 23 212-234 176-198 (361)
433 1vg8_A RAS-related protein RAB 92.7 0.082 2.8E-06 43.4 3.7 25 210-234 7-31 (207)
434 3f9v_A Minichromosome maintena 92.7 0.033 1.1E-06 54.3 1.4 22 213-234 329-350 (595)
435 1zbd_A Rabphilin-3A; G protein 92.6 0.066 2.3E-06 43.9 3.0 24 211-234 8-31 (203)
436 2gf9_A RAS-related protein RAB 92.6 0.066 2.3E-06 43.4 3.0 24 211-234 22-45 (189)
437 3lxx_A GTPase IMAP family memb 92.6 0.085 2.9E-06 44.8 3.8 25 210-234 28-52 (239)
438 2o52_A RAS-related protein RAB 92.6 0.068 2.3E-06 43.9 3.1 24 211-234 25-48 (200)
439 3reg_A RHO-like small GTPase; 92.6 0.066 2.3E-06 43.6 3.0 24 211-234 23-46 (194)
440 2fh5_B SR-beta, signal recogni 92.6 0.066 2.2E-06 44.4 3.0 24 211-234 7-30 (214)
441 3tkl_A RAS-related protein RAB 92.6 0.067 2.3E-06 43.5 3.0 25 210-234 15-39 (196)
442 1zd9_A ADP-ribosylation factor 92.6 0.068 2.3E-06 43.3 3.0 24 211-234 22-45 (188)
443 4gzl_A RAS-related C3 botulinu 92.6 0.084 2.9E-06 43.5 3.6 24 211-234 30-53 (204)
444 2h17_A ADP-ribosylation factor 92.5 0.071 2.4E-06 42.9 3.1 24 211-234 21-44 (181)
445 1p9r_A General secretion pathw 92.5 0.13 4.3E-06 47.9 5.1 24 211-234 167-190 (418)
446 2a5j_A RAS-related protein RAB 92.5 0.068 2.3E-06 43.4 2.9 24 211-234 21-44 (191)
447 2q3h_A RAS homolog gene family 92.5 0.068 2.3E-06 43.8 2.9 24 211-234 20-43 (201)
448 2bcg_Y Protein YP2, GTP-bindin 92.5 0.073 2.5E-06 43.8 3.1 25 210-234 7-31 (206)
449 1h65_A Chloroplast outer envel 92.4 0.15 5E-06 44.3 5.1 25 210-234 38-62 (270)
450 1moz_A ARL1, ADP-ribosylation 92.4 0.066 2.2E-06 43.0 2.7 24 211-234 18-41 (183)
451 2j1l_A RHO-related GTP-binding 92.4 0.074 2.5E-06 44.3 3.1 24 211-234 34-57 (214)
452 1g8f_A Sulfate adenylyltransfe 92.4 0.097 3.3E-06 49.9 4.2 25 210-234 394-418 (511)
453 3def_A T7I23.11 protein; chlor 92.4 0.14 4.8E-06 44.2 5.0 25 210-234 35-59 (262)
454 2p5s_A RAS and EF-hand domain 92.4 0.071 2.4E-06 43.7 2.9 24 211-234 28-51 (199)
455 3k53_A Ferrous iron transport 92.4 0.091 3.1E-06 45.6 3.8 24 211-234 3-26 (271)
456 1x3s_A RAS-related protein RAB 92.4 0.073 2.5E-06 43.1 3.0 24 211-234 15-38 (195)
457 2orv_A Thymidine kinase; TP4A 92.4 0.27 9.4E-06 41.5 6.5 104 211-329 19-125 (234)
458 3clv_A RAB5 protein, putative; 92.4 0.1 3.6E-06 42.3 3.9 24 211-234 7-30 (208)
459 2gf0_A GTP-binding protein DI- 92.4 0.11 3.7E-06 42.3 4.0 24 211-234 8-31 (199)
460 3v9p_A DTMP kinase, thymidylat 92.3 0.18 6.2E-06 42.6 5.4 25 211-235 25-49 (227)
461 3cf2_A TER ATPase, transitiona 92.3 0.23 8E-06 49.9 7.0 51 184-234 477-534 (806)
462 1zj6_A ADP-ribosylation factor 92.3 0.11 3.9E-06 41.8 4.1 24 211-234 16-39 (187)
463 4f4c_A Multidrug resistance pr 92.3 0.68 2.3E-05 49.5 10.9 24 211-234 444-467 (1321)
464 2g3y_A GTP-binding protein GEM 92.3 0.076 2.6E-06 44.4 3.0 23 211-233 37-59 (211)
465 2fv8_A H6, RHO-related GTP-bin 92.3 0.08 2.7E-06 43.7 3.1 24 211-234 25-48 (207)
466 2atx_A Small GTP binding prote 92.3 0.082 2.8E-06 43.0 3.1 24 211-234 18-41 (194)
467 1z06_A RAS-related protein RAB 92.2 0.1 3.5E-06 42.2 3.7 24 211-234 20-43 (189)
468 2il1_A RAB12; G-protein, GDP, 92.2 0.066 2.3E-06 43.6 2.5 24 211-234 26-49 (192)
469 1ksh_A ARF-like protein 2; sma 92.2 0.092 3.1E-06 42.3 3.4 25 211-235 18-42 (186)
470 2hup_A RAS-related protein RAB 92.2 0.083 2.8E-06 43.5 3.1 25 210-234 28-52 (201)
471 2qag_B Septin-6, protein NEDD5 92.2 0.068 2.3E-06 49.7 2.8 21 214-234 45-65 (427)
472 4dkx_A RAS-related protein RAB 92.2 0.079 2.7E-06 44.5 3.0 22 213-234 15-36 (216)
473 1bif_A 6-phosphofructo-2-kinas 92.2 0.088 3E-06 49.8 3.6 24 211-234 39-62 (469)
474 2rcn_A Probable GTPase ENGC; Y 92.2 0.081 2.8E-06 48.0 3.2 23 212-234 216-238 (358)
475 2npi_A Protein CLP1; CLP1-PCF1 92.2 0.068 2.3E-06 50.4 2.8 24 211-234 138-161 (460)
476 2j0v_A RAC-like GTP-binding pr 92.2 0.084 2.9E-06 43.6 3.1 24 211-234 9-32 (212)
477 2b6h_A ADP-ribosylation factor 92.1 0.1 3.5E-06 42.5 3.5 24 211-234 29-52 (192)
478 1ny5_A Transcriptional regulat 92.1 0.59 2E-05 42.9 9.0 46 185-234 138-183 (387)
479 3cr8_A Sulfate adenylyltranfer 92.1 0.068 2.3E-06 51.6 2.8 25 210-234 368-392 (552)
480 2gco_A H9, RHO-related GTP-bin 92.1 0.087 3E-06 43.2 3.1 24 211-234 25-48 (201)
481 3fdi_A Uncharacterized protein 92.1 0.098 3.3E-06 43.3 3.4 24 211-234 6-29 (201)
482 2h57_A ADP-ribosylation factor 92.0 0.066 2.3E-06 43.4 2.3 25 211-235 21-45 (190)
483 1jwy_B Dynamin A GTPase domain 92.0 0.17 6E-06 44.7 5.2 26 209-234 22-47 (315)
484 3cph_A RAS-related protein SEC 92.0 0.086 2.9E-06 43.5 3.0 24 211-234 20-43 (213)
485 2yv5_A YJEQ protein; hydrolase 92.0 0.09 3.1E-06 46.6 3.2 31 193-232 156-186 (302)
486 1f2t_A RAD50 ABC-ATPase; DNA d 91.9 0.11 3.9E-06 40.7 3.5 22 212-233 24-45 (149)
487 1w36_D RECD, exodeoxyribonucle 91.9 0.19 6.6E-06 49.1 5.8 42 212-253 165-207 (608)
488 2xtp_A GTPase IMAP family memb 91.9 0.12 4E-06 44.5 3.8 25 210-234 21-45 (260)
489 4dzz_A Plasmid partitioning pr 91.8 0.22 7.6E-06 40.8 5.4 41 212-254 2-43 (206)
490 3b6e_A Interferon-induced heli 91.8 0.18 6.3E-06 41.5 4.9 20 214-233 51-70 (216)
491 3q3j_B RHO-related GTP-binding 91.8 0.092 3.1E-06 43.7 3.0 24 211-234 27-50 (214)
492 4hlc_A DTMP kinase, thymidylat 91.8 0.19 6.6E-06 41.7 4.9 31 212-244 3-33 (205)
493 2fu5_C RAS-related protein RAB 91.8 0.053 1.8E-06 43.6 1.4 24 211-234 8-31 (183)
494 1mky_A Probable GTP-binding pr 91.8 0.17 5.7E-06 47.4 5.0 48 187-234 151-203 (439)
495 3fkq_A NTRC-like two-domain pr 91.8 0.24 8.1E-06 45.2 5.9 41 208-250 140-181 (373)
496 4akg_A Glutathione S-transfera 91.8 0.52 1.8E-05 53.6 9.6 84 211-316 1609-1693(2695)
497 3gqb_A V-type ATP synthase alp 91.7 0.24 8.1E-06 47.3 5.9 50 195-253 210-259 (578)
498 2dpy_A FLII, flagellum-specifi 91.7 0.099 3.4E-06 48.9 3.4 24 211-234 157-180 (438)
499 2qag_C Septin-7; cell cycle, c 91.6 0.088 3E-06 48.9 2.8 21 214-234 34-54 (418)
500 3ozx_A RNAse L inhibitor; ATP 91.6 0.091 3.1E-06 50.6 3.0 23 212-234 295-317 (538)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.95 E-value=5.4e-28 Score=236.51 Aligned_cols=155 Identities=20% Similarity=0.252 Sum_probs=129.0
Q ss_pred ccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHh--hhhhhccCCeEEEEEeCCCC--CHHHHHHHH
Q 036619 187 CGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN--NDEVKRNFEKVIWVCVSDTF--DQIRIAKAI 262 (352)
Q Consensus 187 ~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i 262 (352)
|||+.++++|.++|..... ...++|+|+||||+||||||+.+|+ +.+++.+|+.++||++++.+ +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~~---~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC---CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 6999999999999975431 4589999999999999999999998 67899999999999999985 899999999
Q ss_pred HHHhCCCCC-------CcccHHHHHHHHHHhcCCc-eEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHHH
Q 036619 263 IEGLGKSAS-------GLNEFQSLMSRIQSSIKGK-KNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVAR 334 (352)
Q Consensus 263 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 334 (352)
+.+++.... ...+.+.+...+++.|.++ ||||||||||+.+ .+ .++. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--~~-----~~~~-~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--TI-----RWAQ-ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--HH-----HHHH-HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--hh-----cccc-cCCCEEEEEcCCHHHHH
Confidence 999986521 1234577889999999996 9999999999863 22 1221 16999999999999998
Q ss_pred HhCC-CCeeeCCCCCCCcC
Q 036619 335 MMGS-TDIISIEQLAEEEC 352 (352)
Q Consensus 335 ~~~~-~~~~~l~~L~~~es 352 (352)
.++. ..+|+|++|+++||
T Consensus 280 ~~~~~~~~~~l~~L~~~ea 298 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDEC 298 (549)
T ss_dssp GCCSCEEEEECCCCCHHHH
T ss_pred HcCCCCeEEECCCCCHHHH
Confidence 8763 46899999998764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.89 E-value=9.3e-24 Score=212.61 Aligned_cols=154 Identities=20% Similarity=0.258 Sum_probs=121.2
Q ss_pred ccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCe-EEEEEeCCCCCHHHHHHHHH
Q 036619 185 EVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK-VIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~ 263 (352)
..+||+.++++|.++|.... ..++++|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45999999999999997532 3689999999999999999999998889999986 99999999999988888887
Q ss_pred HHhCCC------CCC-----cccHHHHHHHHHHhc---CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC
Q 036619 264 EGLGKS------ASG-----LNEFQSLMSRIQSSI---KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN 329 (352)
Q Consensus 264 ~~l~~~------~~~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (352)
..++.. ... ..+.+.+...+++.| .+||+||||||||+. +.|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 754321 001 123456667777766 789999999999984 445543 3 69999999999
Q ss_pred hHHHHHhCCCCeeeCC------CCCCCcC
Q 036619 330 ESVARMMGSTDIISIE------QLAEEEC 352 (352)
Q Consensus 330 ~~va~~~~~~~~~~l~------~L~~~es 352 (352)
+.++..+.....|+|+ +|+++||
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA 303 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEV 303 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHH
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHH
Confidence 9999755444456666 8887764
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.86 E-value=6.1e-22 Score=210.78 Aligned_cols=159 Identities=23% Similarity=0.316 Sum_probs=124.9
Q ss_pred ccCCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhh-hccC-CeEEEEEeCCCCC--HH
Q 036619 181 IDEGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSDTFD--QI 256 (352)
Q Consensus 181 ~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~ 256 (352)
...+.|+||++++++|.++|.... ...++++|+||||+||||||+++|++.+. ..+| +.++|+++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 344679999999999999997654 45899999999999999999999998654 4445 6788999998543 44
Q ss_pred HHHHHHHHHhCCCCC----CcccHHHHHHHHHHhcCCc--eEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh
Q 036619 257 RIAKAIIEGLGKSAS----GLNEFQSLMSRIQSSIKGK--KNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE 330 (352)
Q Consensus 257 ~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~k--r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (352)
..+..++..+..... ...+.+.+...++..|.++ ||||||||||+. ..|.. ..+||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCH
Confidence 556777777765432 2356788899999999877 999999999975 33333 25799999999999
Q ss_pred HHHHH-hCCCCeeeCCC-CCCCcC
Q 036619 331 SVARM-MGSTDIISIEQ-LAEEEC 352 (352)
Q Consensus 331 ~va~~-~~~~~~~~l~~-L~~~es 352 (352)
.++.. ++....+++.+ |+++||
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a 291 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKG 291 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHH
Confidence 99854 45678899996 887764
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.81 E-value=2e-20 Score=184.77 Aligned_cols=155 Identities=22% Similarity=0.304 Sum_probs=114.3
Q ss_pred CCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhh-hccC-CeEEEEEeCCCCCHHHHHH
Q 036619 183 EGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSDTFDQIRIAK 260 (352)
Q Consensus 183 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~ 260 (352)
.+.||||+.++++|.++|.... ...++++|+||||+||||||+.+|++..+ ..+| +.++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 3569999999999999997543 45789999999999999999999998766 7889 58999999875 3334444
Q ss_pred HH---HHHhCCC----CCCcccHHHHHHHHHHhcCC--ceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChH
Q 036619 261 AI---IEGLGKS----ASGLNEFQSLMSRIQSSIKG--KKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES 331 (352)
Q Consensus 261 ~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 331 (352)
.+ +..++.. .....+.+.+...++..+.+ +++||||||+|+. ..+ ..+ .+||+||||||++.
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l-~~l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVL-KAF---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHH-HTT---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHH-HHh---cCCCeEEEECCCcH
Confidence 43 4455421 12334567778888888865 7999999999863 222 223 46899999999999
Q ss_pred HHHHhCCCCeeeC---CCCCCCcC
Q 036619 332 VARMMGSTDIISI---EQLAEEEC 352 (352)
Q Consensus 332 va~~~~~~~~~~l---~~L~~~es 352 (352)
++..++ ...+++ ++|+++||
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea 291 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKG 291 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHH
Confidence 886543 334444 57887653
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.77 E-value=3.6e-19 Score=136.47 Aligned_cols=80 Identities=24% Similarity=0.517 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhc--hhcCChHHHHHHHHHHHhhhcchHHH
Q 036619 4 AIVSSLLDQLNSIAQDQVKGKWRLVTGVEQEVGKLTTNLQAIQAVLEDAEQR--QMKQDKAVTFWLDQLIDASYDMEDVL 81 (352)
Q Consensus 4 ~~vs~~~~kl~~~l~~~~~~e~~~~~~v~~~~~~L~~~L~~i~~~l~~ae~~--~~~~~~~~~~Wl~~lr~~ayd~eD~l 81 (352)
|+|+++++||+++ +.+|+.++.||++++++|+++|++|++||.+|+.+ +.. ++.++.|++|||++|||+||||
T Consensus 1 a~v~~ll~KL~~l----l~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~-d~~vk~W~~~vrdlaYD~ED~i 75 (115)
T 3qfl_A 1 AAISNLIPKLGEL----LTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQL-DSQDKLWADEVRELSYVIEDVV 75 (115)
T ss_dssp CTTCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888887 77899999999999999999999999999999987 445 8999999999999999999999
Q ss_pred HHHHHHH
Q 036619 82 EEWITET 88 (352)
Q Consensus 82 D~~~~~~ 88 (352)
|+|.|+.
T Consensus 76 D~f~~~~ 82 (115)
T 3qfl_A 76 DKFLVQV 82 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999775
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.46 E-value=1.4e-13 Score=129.44 Aligned_cols=168 Identities=15% Similarity=0.093 Sum_probs=107.9
Q ss_pred CccccccchHHHHHHHH-cCccccCCCCeEEEEE--EecCCCcHHHHHHHHHhhhhhh---ccCC-eEEEEEeCCCCCHH
Q 036619 184 GEVCGRVDEKSELFSKL-LCESSEQQNGLQVISL--VGLGGIGKTTLAQLAYNNDEVK---RNFE-KVIWVCVSDTFDQI 256 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~ 256 (352)
..++||+.++++|..+| .....+.......+.| +|++|+|||||++.+++..... ..|+ ..+|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999988 4321100012345556 9999999999999999853221 1222 36788877777888
Q ss_pred HHHHHHHHHhCCCCC-CcccHHHHHHHHHHhcC--CceEEEEecCCCCCCc------cChhHHHHhhccC---C--CCcE
Q 036619 257 RIAKAIIEGLGKSAS-GLNEFQSLMSRIQSSIK--GKKNFLVLDDVWDGDY------NKWQPFFRCLKNG---L--HGSK 322 (352)
Q Consensus 257 ~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~------~~~~~l~~~l~~~---~--~gs~ 322 (352)
.++..|+.+++...+ ...+...+...+.+.+. +++++|||||+|.... +.+..+...+... . ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 999999999876533 22334556666666664 7799999999977421 2233333333322 1 3344
Q ss_pred EEEecCChHHHHHh--------CC-CCeeeCCCCCCCc
Q 036619 323 ILVTTRNESVARMM--------GS-TDIISIEQLAEEE 351 (352)
Q Consensus 323 IivTTR~~~va~~~--------~~-~~~~~l~~L~~~e 351 (352)
||+||+...+...+ .. ...+++.+|+.++
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e 219 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRE 219 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHH
Confidence 78888766543221 11 2238999998764
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.31 E-value=2.2e-12 Score=118.31 Aligned_cols=154 Identities=12% Similarity=0.178 Sum_probs=101.7
Q ss_pred cCCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCC------CH
Q 036619 182 DEGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF------DQ 255 (352)
Q Consensus 182 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~ 255 (352)
....++||+.++++|.+++.. . +++.|+|++|+|||||++.+++.. . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~------~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN------Y--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH------C--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhc------C--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 345799999999999998853 1 588999999999999999998742 2 6777765432 56
Q ss_pred HHHHHHHHHHhCC----------------CCC--CcccHHHHHHHHHHhcCC-ceEEEEecCCCCCCc-------cChhH
Q 036619 256 IRIAKAIIEGLGK----------------SAS--GLNEFQSLMSRIQSSIKG-KKNFLVLDDVWDGDY-------NKWQP 309 (352)
Q Consensus 256 ~~~~~~i~~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~~~-------~~~~~ 309 (352)
..++..+...+.. ... ...+...+...+.+.... ++++|||||++..+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 6677777665542 000 123456666667666543 389999999977432 12333
Q ss_pred HHHhhccCCCCcEEEEecCChHH-HHH----------hCC-CCeeeCCCCCCCc
Q 036619 310 FFRCLKNGLHGSKILVTTRNESV-ARM----------MGS-TDIISIEQLAEEE 351 (352)
Q Consensus 310 l~~~l~~~~~gs~IivTTR~~~v-a~~----------~~~-~~~~~l~~L~~~e 351 (352)
+...+... ++.++|+|++...+ ... .+. ...++|.||+.+|
T Consensus 155 L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e 207 (350)
T 2qen_A 155 FAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDT 207 (350)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHH
T ss_pred HHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHH
Confidence 33333322 47789999887654 322 011 2378999999765
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=6.4e-12 Score=116.94 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=110.1
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhc----c--CCeEEEEEeCCCC-CHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR----N--FEKVIWVCVSDTF-DQI 256 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~--F~~~~wv~vs~~~-~~~ 256 (352)
..++||+.+++++..+|..... ....+.+.|+|++|+|||+||+.+++...-.. . ....+|++++... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988754221 13356889999999999999999998532211 1 3457788877766 888
Q ss_pred HHHHHHHHHhCCCCC--CcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHH-HHhhccCCCCcEEEEecCChHH-
Q 036619 257 RIAKAIIEGLGKSAS--GLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPF-FRCLKNGLHGSKILVTTRNESV- 332 (352)
Q Consensus 257 ~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l-~~~l~~~~~gs~IivTTR~~~v- 332 (352)
.++..++..+.+... .......+...+.+.+..++.+|||||++......+..+ ...+.....+..||+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 888999888843322 122345667777788877666999999976432222222 3333332267788999886521
Q ss_pred ---HHHh--CCCCeeeCCCCCCCc
Q 036619 333 ---ARMM--GSTDIISIEQLAEEE 351 (352)
Q Consensus 333 ---a~~~--~~~~~~~l~~L~~~e 351 (352)
...+ .....+++.+++.++
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~ 201 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQ 201 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHH
T ss_pred hhhCHHHHhcCCCeEEECCCCHHH
Confidence 1111 112388999987654
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=2.2e-11 Score=113.39 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=112.8
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhcc-CCeEEEEEeCCCCCHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i 262 (352)
..++||+.+++++..++.....+.....+.+.|+|++|+|||||++.+++. .... -...+|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 679999999999999886532111123348889999999999999999974 3222 1356788888888888999999
Q ss_pred HHHhCCCCCC-cccHHHHHHHHHHhc--CCceEEEEecCCCCCCccChhHHHHhhccCC----CCcEEEEecCChHHHHH
Q 036619 263 IEGLGKSASG-LNEFQSLMSRIQSSI--KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL----HGSKILVTTRNESVARM 335 (352)
Q Consensus 263 ~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~IivTTR~~~va~~ 335 (352)
+..++...+. ......+...+...+ .+++.+||||+++..+......|...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9988754322 224455566666655 3668899999998765445555655553211 36678888877644332
Q ss_pred hC-------CCCeeeCCCCCCCc
Q 036619 336 MG-------STDIISIEQLAEEE 351 (352)
Q Consensus 336 ~~-------~~~~~~l~~L~~~e 351 (352)
+. ....+++.+++.++
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~ 197 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQ 197 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHH
Confidence 21 12368899887654
No 10
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.27 E-value=2.5e-11 Score=111.45 Aligned_cols=152 Identities=16% Similarity=0.241 Sum_probs=96.6
Q ss_pred CCccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCC-----CCHHH
Q 036619 183 EGEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-----FDQIR 257 (352)
Q Consensus 183 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~ 257 (352)
...++||+.+++.|.+ +.. +++.|+|++|+|||+|++.+.+.. .. ..+|+++... .+...
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHHH
Confidence 3569999999999998 632 489999999999999999999752 22 2578887642 34455
Q ss_pred HHHHHHHHhCC-------------C-----CC-----------CcccHHHHHHHHHHhcCCceEEEEecCCCCCC----c
Q 036619 258 IAKAIIEGLGK-------------S-----AS-----------GLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD----Y 304 (352)
Q Consensus 258 ~~~~i~~~l~~-------------~-----~~-----------~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----~ 304 (352)
++..+.+.+.. . .+ .......+...+.+... ++++|||||++..+ .
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCch
Confidence 55554443310 0 00 12345556666655433 49999999997742 1
Q ss_pred cChhHHHHhhccCCCCcEEEEecCChHH-HHH---------h-CC-CCeeeCCCCCCCc
Q 036619 305 NKWQPFFRCLKNGLHGSKILVTTRNESV-ARM---------M-GS-TDIISIEQLAEEE 351 (352)
Q Consensus 305 ~~~~~l~~~l~~~~~gs~IivTTR~~~v-a~~---------~-~~-~~~~~l~~L~~~e 351 (352)
+.+..+...... .++.++|+|++.... ... + +. ...++|.+|+.+|
T Consensus 156 ~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e 213 (357)
T 2fna_A 156 NLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREE 213 (357)
T ss_dssp CCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHH
T ss_pred hHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHH
Confidence 233334333332 246789999998754 222 1 11 2578999998765
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.26 E-value=2.3e-11 Score=113.00 Aligned_cols=166 Identities=18% Similarity=0.119 Sum_probs=107.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhc---c-CCeEEEEEeCCCCCHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR---N-FEKVIWVCVSDTFDQIRIA 259 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~~~ 259 (352)
..++||+.+++++..+|...-. ......+.|+|++|+||||||+.+++...-.. . -...+|+++....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 6799999999999998854311 13456788999999999999999997532110 1 1356788888888889999
Q ss_pred HHHHHHhCCCCCC-cccHHHHHHHHHHhc--CCceEEEEecCCCCCCcc--ChhHHHHhhccC-----CCCcEEEEecCC
Q 036619 260 KAIIEGLGKSASG-LNEFQSLMSRIQSSI--KGKKNFLVLDDVWDGDYN--KWQPFFRCLKNG-----LHGSKILVTTRN 329 (352)
Q Consensus 260 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~--~~~~l~~~l~~~-----~~gs~IivTTR~ 329 (352)
..++..++...+. ......+...+.+.+ .+++.+||||+++..... ..+.+...+... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 9999999764332 233555666666666 456899999999764322 223343333211 345677888776
Q ss_pred hHH----HHHh-CC--CCeeeCCCCCCCc
Q 036619 330 ESV----ARMM-GS--TDIISIEQLAEEE 351 (352)
Q Consensus 330 ~~v----a~~~-~~--~~~~~l~~L~~~e 351 (352)
... ...+ .. ...+++.+++.++
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~ 205 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQ 205 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHH
Confidence 522 1111 11 2468888887654
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=1.1e-11 Score=115.23 Aligned_cols=164 Identities=18% Similarity=0.217 Sum_probs=106.5
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccC---CeEEEEEeCCCCCHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSDTFDQIRIAK 260 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~ 260 (352)
..++||+.+++.+.+++..... ......+.|+|++|+|||||++.+++. ....+ ...+|+++....+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 6799999999999998864311 134568889999999999999999984 33322 3567888777667778888
Q ss_pred HHHHHhCCCCC-CcccHHHHHHHHHHhcC--CceEEEEecCCCCCC----ccChhHHHHhhcc-CCCCcEEEEecCChHH
Q 036619 261 AIIEGLGKSAS-GLNEFQSLMSRIQSSIK--GKKNFLVLDDVWDGD----YNKWQPFFRCLKN-GLHGSKILVTTRNESV 332 (352)
Q Consensus 261 ~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~----~~~~~~l~~~l~~-~~~gs~IivTTR~~~v 332 (352)
.++..++.... ...+...+...+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 88887765432 12234555556666553 458999999996632 2334444444422 2235567888876543
Q ss_pred HHHhC-----C--CCeeeCCCCCCCc
Q 036619 333 ARMMG-----S--TDIISIEQLAEEE 351 (352)
Q Consensus 333 a~~~~-----~--~~~~~l~~L~~~e 351 (352)
...+. . ...+++.+|+.++
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~ 201 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEE 201 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHH
Confidence 22111 1 2478999998654
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.12 E-value=5.2e-10 Score=95.30 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=90.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCC-eEEEEEeCCCCCHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 262 (352)
..++|++..++.+.+++.... ...+.|+|++|+|||+||+.+++... ...+. ..+.++.+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 458999999999999986533 22388999999999999999987421 11221 23344444433332222211
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChH-HH-HHhCCCC
Q 036619 263 IEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES-VA-RMMGSTD 340 (352)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-va-~~~~~~~ 340 (352)
....... ....+++.+|||||++.......+.+...+.....++++|+||+... +. .......
T Consensus 90 ~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 KEFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 1111100 01136789999999987655556677777776666788888887653 21 1222344
Q ss_pred eeeCCCCCCCc
Q 036619 341 IISIEQLAEEE 351 (352)
Q Consensus 341 ~~~l~~L~~~e 351 (352)
.+++.+++.++
T Consensus 155 ~i~~~~~~~~~ 165 (226)
T 2chg_A 155 VFRFKPVPKEA 165 (226)
T ss_dssp EEECCCCCHHH
T ss_pred eeecCCCCHHH
Confidence 78888888654
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.09 E-value=4.8e-10 Score=96.76 Aligned_cols=156 Identities=15% Similarity=0.189 Sum_probs=90.8
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..++||+..++.|..++.... ....+.|+|++|+||||||+.+++.......+.. ........ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHh
Confidence 458999999999999886532 2357889999999999999999875322111100 00000000 01111
Q ss_pred HHhCC-----CCCCcccHHHHHHHHHHh----cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChH-HH
Q 036619 264 EGLGK-----SASGLNEFQSLMSRIQSS----IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES-VA 333 (352)
Q Consensus 264 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-va 333 (352)
..... ........+.+...+... ..+++.+|||||++..+...++.+...+.....+..+|+||+... +.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 00000 000111122222222221 245689999999987665677888888876666788888887643 22
Q ss_pred H-HhCCCCeeeCCCCCCCc
Q 036619 334 R-MMGSTDIISIEQLAEEE 351 (352)
Q Consensus 334 ~-~~~~~~~~~l~~L~~~e 351 (352)
. .......+++.+|+.+|
T Consensus 171 ~~l~~r~~~i~l~~l~~~e 189 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQ 189 (250)
T ss_dssp HHHHTTSEEEECCCCCHHH
T ss_pred HHHHHHhhhccCCCCCHHH
Confidence 2 22334678999998754
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=2.5e-09 Score=96.82 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=90.1
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccC-CeEEEEEeCCCCCHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 262 (352)
..++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++.-.. ..+ ...++++.+....... ++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCCEEEecCccccChHH-HHHH
Confidence 458999999999999986533 223889999999999999999875211 111 1234444443322221 1122
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhc-CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChH-HHHH-hCCC
Q 036619 263 IEGLGKSASGLNEFQSLMSRIQSSI-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES-VARM-MGST 339 (352)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-va~~-~~~~ 339 (352)
+..+... ...+ .+++.+|||||++......++.|...+.....++.+|+||.... +... ....
T Consensus 93 ~~~~~~~--------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQK--------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHB--------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhc--------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 2211100 0011 45689999999987655567777777776666788888876542 2222 2334
Q ss_pred CeeeCCCCCCCc
Q 036619 340 DIISIEQLAEEE 351 (352)
Q Consensus 340 ~~~~l~~L~~~e 351 (352)
..+++.+++.++
T Consensus 159 ~~i~~~~~~~~~ 170 (323)
T 1sxj_B 159 AILRYSKLSDED 170 (323)
T ss_dssp EEEECCCCCHHH
T ss_pred eEEeecCCCHHH
Confidence 578898888654
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.4e-08 Score=91.46 Aligned_cols=126 Identities=10% Similarity=0.006 Sum_probs=83.7
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhc------cCCeEEEEEeCCCCCHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR------NFEKVIWVCVSDTFDQIR 257 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------~F~~~~wv~vs~~~~~~~ 257 (352)
..+.||++|+++|...|...-. ......+.|+|++|+|||++++.|.+.-.... .| ..+.|++....+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHH
Confidence 3489999999999988865432 14567788999999999999999998532211 12 456777777788889
Q ss_pred HHHHHHHHhCCCCCCc-ccHHHHHHHHHHh--cCCceEEEEecCCCCCCccChhHHHHhh
Q 036619 258 IAKAIIEGLGKSASGL-NEFQSLMSRIQSS--IKGKKNFLVLDDVWDGDYNKWQPFFRCL 314 (352)
Q Consensus 258 ~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~--l~~kr~LlVlDdvw~~~~~~~~~l~~~l 314 (352)
++..|++++.+..... ...+.+...+... -.+++++|+||++..-. .-+.|...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~ 154 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFE 154 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHH
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHH
Confidence 9999999997653222 2233333333332 24678999999997653 234444444
No 17
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.86 E-value=2.1e-08 Score=83.12 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=80.4
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhc-----cCCeEEEEEeCCCCCHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR-----NFEKVIWVCVSDTFDQIRI 258 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----~F~~~~wv~vs~~~~~~~~ 258 (352)
..++||+++++++.+.+.... ...+.|+|++|+|||+||+.+++...... .....++++++. +
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H
T ss_pred cccccchHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H
Confidence 468999999999999986532 34567999999999999999987521110 112333443211 1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHH-hc-CCceEEEEecCCCCCC--------ccChhHHHHhhccCCCCcEEEEecC
Q 036619 259 AKAIIEGLGKSASGLNEFQSLMSRIQS-SI-KGKKNFLVLDDVWDGD--------YNKWQPFFRCLKNGLHGSKILVTTR 328 (352)
Q Consensus 259 ~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l-~~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~IivTTR 328 (352)
. ... ............+.+ .. .+++.+|||||+.... ......+...+..+ +..+|.||.
T Consensus 90 ~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~i~~~~ 159 (195)
T 1jbk_A 90 V-------AGA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGATT 159 (195)
T ss_dssp H-------TTT-CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT--SCCEEEEEC
T ss_pred h-------ccC-CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC--CeEEEEeCC
Confidence 0 000 000111111111211 11 4568899999997642 22344455444332 345777776
Q ss_pred ChHHHH-------HhCCCCeeeCCCCCCCc
Q 036619 329 NESVAR-------MMGSTDIISIEQLAEEE 351 (352)
Q Consensus 329 ~~~va~-------~~~~~~~~~l~~L~~~e 351 (352)
...... .......+.+.+++.++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~ 189 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVED 189 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHH
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHH
Confidence 654322 12223357888877553
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.71 E-value=1.5e-08 Score=91.69 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=86.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccC-CeEEEEEeCCCCCHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 262 (352)
..++|++..++.+..++.... ...+.|+|++|+||||+|+.+++.... ..+ ...+.++.+....... +..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~-~~~- 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNASDERGINV-IRE- 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEETTCHHHHHT-THH-
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCceEEeeccccCchHH-HHH-
Confidence 458999999999998886532 334889999999999999999875211 111 1233333332111110 000
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHh--c-CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChH-HHHH-hC
Q 036619 263 IEGLGKSASGLNEFQSLMSRIQSS--I-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES-VARM-MG 337 (352)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-va~~-~~ 337 (352)
........ + .+++.+||+|+++......++.|...+.....++++|+||.... +... ..
T Consensus 96 ----------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 96 ----------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp ----------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred ----------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 01111111 1 26788999999987665667778888776666788888886642 1111 11
Q ss_pred CCCeeeCCCCCCCc
Q 036619 338 STDIISIEQLAEEE 351 (352)
Q Consensus 338 ~~~~~~l~~L~~~e 351 (352)
....+++.+++.++
T Consensus 160 r~~~~~~~~l~~~~ 173 (327)
T 1iqp_A 160 RCAIFRFRPLRDED 173 (327)
T ss_dssp TEEEEECCCCCHHH
T ss_pred hCcEEEecCCCHHH
Confidence 23478888887654
No 19
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.56 E-value=2.1e-07 Score=76.72 Aligned_cols=45 Identities=24% Similarity=0.207 Sum_probs=37.7
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++||+.+++.+.+.+.... ...+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT------KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999986532 345679999999999999999874
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.54 E-value=2.7e-07 Score=85.08 Aligned_cols=156 Identities=15% Similarity=0.240 Sum_probs=88.8
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..++|++..++.+.+.+.... ....+.|+|++|+||||||+.+.+.......+. ..++........+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 458999999999999886432 234678999999999999999987432111110 00000001111111
Q ss_pred HHhC-------CC-CCCcccHHHHHHHHHHh-cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh-HHH
Q 036619 264 EGLG-------KS-ASGLNEFQSLMSRIQSS-IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVA 333 (352)
Q Consensus 264 ~~l~-------~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va 333 (352)
.... .. .....+...+...+... ..+++.+|||||+...+...++.|...+.....+..+|++|... .+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 1000 00 01122233333332221 24567899999998766566777888887655566777776543 222
Q ss_pred H-HhCCCCeeeCCCCCCCc
Q 036619 334 R-MMGSTDIISIEQLAEEE 351 (352)
Q Consensus 334 ~-~~~~~~~~~l~~L~~~e 351 (352)
. .......+++.+++.++
T Consensus 164 ~~l~sr~~~i~~~~l~~~~ 182 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQ 182 (373)
T ss_dssp HHHHTTSEEEECCCCCHHH
T ss_pred HHHHhheeEeeCCCCCHHH
Confidence 2 22334678888887654
No 21
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.49 E-value=7.9e-08 Score=86.65 Aligned_cols=143 Identities=14% Similarity=0.140 Sum_probs=84.2
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCC-eEEEEEeCCCCCHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 262 (352)
..++|++..++.+.+++.... ...+.++|++|+|||++|+.+.+.-. ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC------CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCCC------CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 358999999998888775432 22378999999999999999987421 11111 1233443332111
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHh--c-CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChH-HHHH-hC
Q 036619 263 IEGLGKSASGLNEFQSLMSRIQSS--I-KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNES-VARM-MG 337 (352)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-va~~-~~ 337 (352)
.........+... + .+++.+||+|++........+.|...+.....++.+|+||.... +... ..
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 1111111111111 1 35688999999977654455666666665556777887776543 2222 22
Q ss_pred CCCeeeCCCCCCCc
Q 036619 338 STDIISIEQLAEEE 351 (352)
Q Consensus 338 ~~~~~~l~~L~~~e 351 (352)
....+++.+++.++
T Consensus 152 r~~~i~~~~~~~~~ 165 (319)
T 2chq_A 152 RCAVFRFKPVPKEA 165 (319)
T ss_dssp TCEEEECCCCCHHH
T ss_pred hCeEEEecCCCHHH
Confidence 34578888887653
No 22
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.45 E-value=6.1e-07 Score=73.98 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=57.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
...+.|+|++|+|||||++.+++.......+. +.++ +...+...+.......... .+...+. +
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~ 100 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKDT-----KFLKTVL-----N 100 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCCS-----HHHHHHH-----T
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchHH-----HHHHHhc-----C
Confidence 46789999999999999999998533222322 3333 3444554444433221111 1122221 4
Q ss_pred eEEEEecCCCCCCccChh--HHHHhhccC-CCCcEEEEecCCh
Q 036619 291 KNFLVLDDVWDGDYNKWQ--PFFRCLKNG-LHGSKILVTTRNE 330 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~IivTTR~~ 330 (352)
.-+|||||++....+.|. .+...+... ..|..||+||...
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 568999999853323443 344444321 2466788888643
No 23
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.35 E-value=9.3e-07 Score=74.24 Aligned_cols=100 Identities=20% Similarity=0.276 Sum_probs=55.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCce
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKK 291 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (352)
..+.|+|++|+|||+||+.+++. .......++|++++ .+...+...+... ....+...+.+ .
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~~-----~ 116 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQDQ-----TMNEKLDYIKK-----V 116 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC---C-----CCHHHHHHHHH-----S
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhccc-----hHHHHHHHhcC-----C
Confidence 67889999999999999999985 33333456666543 4444444433211 12222333322 2
Q ss_pred EEEEecCCCCCCccChhH--HHH-hhccC-CCCcEEEEecCC
Q 036619 292 NFLVLDDVWDGDYNKWQP--FFR-CLKNG-LHGSKILVTTRN 329 (352)
Q Consensus 292 ~LlVlDdvw~~~~~~~~~--l~~-~l~~~-~~gs~IivTTR~ 329 (352)
-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 117 ~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 117 PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 399999997643333322 332 33221 235568888774
No 24
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.34 E-value=1.5e-06 Score=77.91 Aligned_cols=150 Identities=14% Similarity=0.125 Sum_probs=79.9
Q ss_pred ccccccchHHHHHHHHcCcc---------ccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCH
Q 036619 185 EVCGRVDEKSELFSKLLCES---------SEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQ 255 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 255 (352)
.++|.+..++.|.+.+.... -........+.|+|++|+|||+||+.+.+............++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888888887776553210 000133556889999999999999988875322222222223333311
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCC---------CccChhHHHHhhccCCCCcEEEEe
Q 036619 256 IRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG---------DYNKWQPFFRCLKNGLHGSKILVT 326 (352)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivT 326 (352)
.+.....+ .....+...+... +.-+|+||++... .......|...+.....+..||+|
T Consensus 109 ---------~l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 01110000 1111222222222 3459999999743 223445667777666667778888
Q ss_pred cCChHHHHHh--CC------CCeeeCCCCCCC
Q 036619 327 TRNESVARMM--GS------TDIISIEQLAEE 350 (352)
Q Consensus 327 TR~~~va~~~--~~------~~~~~l~~L~~~ 350 (352)
|......... .+ ...+++.+++.+
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~ 207 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDE 207 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHH
Confidence 8654322111 11 256777777654
No 25
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.34 E-value=3.8e-07 Score=72.52 Aligned_cols=114 Identities=15% Similarity=0.026 Sum_probs=68.1
Q ss_pred ccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHH
Q 036619 185 EVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIE 264 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 264 (352)
.++|+...+.++.+.+..-.. ...-|.|+|.+|+|||+||+.+++... +.....+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~v--~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEFV--YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSST-TTTSCCE--EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCCEE--EECCCCCcc---------
Confidence 478999999998887754321 123367999999999999999987421 1111122 555543221
Q ss_pred HhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC
Q 036619 265 GLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN 329 (352)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (352)
... ...+... ..-.|+||++..........+...+.......+||.||..
T Consensus 66 ---------~~~---~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQL---NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCH---HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhh---hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 011 1111111 2347899999876555566677777554445677777764
No 26
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.33 E-value=3.4e-07 Score=78.77 Aligned_cols=114 Identities=13% Similarity=0.140 Sum_probs=64.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
...+.|+|++|+||||||+.+++.. ........|++++...+. +.+ .+ +.+ .+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~--~~~~~~~~~~~~~~~~~~------~~~-----------------~~-~~~-~~ 104 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA--NELERRSFYIPLGIHASI------STA-----------------LL-EGL-EQ 104 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEGGGGGGS------CGG-----------------GG-TTG-GG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEHHHHHHH------HHH-----------------HH-Hhc-cC
Confidence 4678899999999999999998753 222345667766442110 000 00 011 34
Q ss_pred eEEEEecCCCCCCccC--hhHHHHhhccC-CCC-cEEEEecCCh---------HHHHHhCCCCeeeCCCCCCCc
Q 036619 291 KNFLVLDDVWDGDYNK--WQPFFRCLKNG-LHG-SKILVTTRNE---------SVARMMGSTDIISIEQLAEEE 351 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~g-s~IivTTR~~---------~va~~~~~~~~~~l~~L~~~e 351 (352)
..+|||||++...... .+.+...+... ..+ .++|+||+.. .+...+.....+++.+++.++
T Consensus 105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~ 178 (242)
T 3bos_A 105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDE 178 (242)
T ss_dssp SSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGG
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHH
Confidence 6799999997653332 33444443321 113 2477776632 222222223678899888765
No 27
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.29 E-value=1.9e-06 Score=81.44 Aligned_cols=135 Identities=20% Similarity=0.300 Sum_probs=76.1
Q ss_pred CccccccchH---HHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCC-CCHHHHH
Q 036619 184 GEVCGRVDEK---SELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FDQIRIA 259 (352)
Q Consensus 184 ~~~~gr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~ 259 (352)
..++|.+..+ ..|...+... .+..+.|+|++|+||||||+.+.+. ....| +.++.. ..... +
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH-H
Confidence 4578887766 5666666442 2467889999999999999999974 22222 222221 12221 1
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHH-hcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEE-EecCChH--H-HH
Q 036619 260 KAIIEGLGKSASGLNEFQSLMSRIQS-SIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKIL-VTTRNES--V-AR 334 (352)
Q Consensus 260 ~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTTR~~~--v-a~ 334 (352)
+.++ ..... ...+++.+|+||++........+.|...+..+ ...+| .||.+.. + ..
T Consensus 92 r~~~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 REAI-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHH-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHH
T ss_pred HHHH-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHH
Confidence 1111 11111 12467889999999877656667777777653 22333 3555543 2 22
Q ss_pred HhCCCCeeeCCCCCCCc
Q 036619 335 MMGSTDIISIEQLAEEE 351 (352)
Q Consensus 335 ~~~~~~~~~l~~L~~~e 351 (352)
...-..++.+.+++.+|
T Consensus 153 L~sR~~v~~l~~l~~ed 169 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTED 169 (447)
T ss_dssp HHTTEEEEECCCCCHHH
T ss_pred HhCceeEEeeCCcCHHH
Confidence 23335578888887654
No 28
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.29 E-value=1.5e-06 Score=82.07 Aligned_cols=123 Identities=19% Similarity=0.268 Sum_probs=71.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccC--CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (352)
...+.|+|++|+||||||+.+++. ....| ...++++.+ .+...+...+... .. ..+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 567889999999999999999984 33333 234455433 3344444444321 11 22333334
Q ss_pred CceEEEEecCCCCCCc--cChhHHHHhhcc-CCCCcEEEEecCCh---------HHHHHhCCCCeeeCCCCCCC
Q 036619 289 GKKNFLVLDDVWDGDY--NKWQPFFRCLKN-GLHGSKILVTTRNE---------SVARMMGSTDIISIEQLAEE 350 (352)
Q Consensus 289 ~kr~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~IivTTR~~---------~va~~~~~~~~~~l~~L~~~ 350 (352)
.+.-+|+|||++.... ..-+.+...+.. ...|..||+||.+. .+...+....++.+.+++.+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e 266 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHH
Confidence 4677999999976432 123345454432 23467888888762 33443444467778777654
No 29
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=3.7e-06 Score=75.38 Aligned_cols=138 Identities=13% Similarity=0.044 Sum_probs=86.0
Q ss_pred ccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhh-hh-ccCCeEEEEEeCC-CCCHHHHHHHHHHH
Q 036619 189 RVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDE-VK-RNFEKVIWVCVSD-TFDQIRIAKAIIEG 265 (352)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~-~~F~~~~wv~vs~-~~~~~~~~~~i~~~ 265 (352)
-++.++.|.+.+... . ...+.++|++|+||||+|+.+.+... .. .|.+ ..+++.+. ...+..+ +++++.
T Consensus 2 ~~~~~~~L~~~i~~~-----~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 2 AKDQLETLKRIIEKS-----E-GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp --CHHHHHHHHHHTC-----S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHCC-----C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHH
Confidence 345556666666432 2 56888999999999999999986311 11 1333 34454432 2332222 233333
Q ss_pred hCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh-HHHHHhCCCCeeeC
Q 036619 266 LGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVARMMGSTDIISI 344 (352)
Q Consensus 266 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va~~~~~~~~~~l 344 (352)
+...+ ..+++-++|+|++...+....+.|...+....+.+.+|++|.+. .+...+.+. .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 32211 13467789999998877677888888888776677777766443 455555555 8999
Q ss_pred CCCCCCc
Q 036619 345 EQLAEEE 351 (352)
Q Consensus 345 ~~L~~~e 351 (352)
.++++++
T Consensus 137 ~~l~~~~ 143 (305)
T 2gno_A 137 VVNVPKE 143 (305)
T ss_dssp ECCCCHH
T ss_pred CCCCHHH
Confidence 9998764
No 30
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=4.7e-06 Score=76.11 Aligned_cols=155 Identities=11% Similarity=0.084 Sum_probs=85.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCC-eEEEEEeCCCCCHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 262 (352)
..++|+++.++.+..++.... ...+.|+|++|+||||||+.+.+.......+. ....++.+.......+ .+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 468999999999999886543 22378999999999999999987532111111 2333444443232222 222
Q ss_pred HHHhCCC-CCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh-HHHHHh-CCC
Q 036619 263 IEGLGKS-ASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVARMM-GST 339 (352)
Q Consensus 263 ~~~l~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va~~~-~~~ 339 (352)
+..+... ....... .....-.++.-+|++|++..........|...+.......++|++|... .+...+ ...
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 2211110 0000000 0011112455799999997765455667777776655566777776443 221111 113
Q ss_pred CeeeCCCCCCC
Q 036619 340 DIISIEQLAEE 350 (352)
Q Consensus 340 ~~~~l~~L~~~ 350 (352)
..+++.+++.+
T Consensus 185 ~~i~~~~~~~~ 195 (353)
T 1sxj_D 185 SKFRFKALDAS 195 (353)
T ss_dssp EEEECCCCCHH
T ss_pred ceEEeCCCCHH
Confidence 46778777754
No 31
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=1.3e-06 Score=79.89 Aligned_cols=157 Identities=8% Similarity=0.039 Sum_probs=80.3
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhh-h-c--cCC-----------------
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEV-K-R--NFE----------------- 242 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~-~--~F~----------------- 242 (352)
..++|.+...+.+.+++.... .... +.|+|+.|+|||||++.+...-.- . . .++
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhCC----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 458898888888877762221 1223 889999999999999988763100 0 0 000
Q ss_pred ---eEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC
Q 036619 243 ---KVIWVCVSDTF-DQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL 318 (352)
Q Consensus 243 ---~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~ 318 (352)
..+.+..+... ......++++..+.....- . ... .+. .+..++-++|||++...+....+.+...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~---~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV-D---FQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccc-c---ccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 01111111100 0000122222222111000 0 000 000 023466799999998866556677777776655
Q ss_pred CCcEEEEecCCh-HHHHHh-CCCCeeeCCCCCCCc
Q 036619 319 HGSKILVTTRNE-SVARMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 319 ~gs~IivTTR~~-~va~~~-~~~~~~~l~~L~~~e 351 (352)
.++.+|++|... .+...+ .-...+++.+++.++
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~ 197 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSE 197 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHH
Confidence 567787777653 332222 234678888887653
No 32
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.17 E-value=4.2e-06 Score=75.67 Aligned_cols=137 Identities=17% Similarity=0.180 Sum_probs=83.2
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..++|.+..+..+.+++.... ...++.+.|++|+|||++|+.+.+.. . ...+.++.+. .... .++.++
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~-~~~~-~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSD-CKID-FVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTT-CCHH-HHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEcccc-cCHH-HHHHHH
Confidence 468999999999999887433 24567788999999999999998742 1 1234455443 2222 112211
Q ss_pred HHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCC-ccChhHHHHhhccCCCCcEEEEecCChH-----HHHHhC
Q 036619 264 EGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGD-YNKWQPFFRCLKNGLHGSKILVTTRNES-----VARMMG 337 (352)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~IivTTR~~~-----va~~~~ 337 (352)
...... ....+++.+|+||++.... .+..+.|...+.....+.++|+||.... +...
T Consensus 94 ~~~~~~---------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR-- 156 (324)
T 3u61_B 94 TNFASA---------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR-- 156 (324)
T ss_dssp HHHHHB---------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH--
T ss_pred HHHHhh---------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh--
Confidence 111000 0012478899999997654 3455566666654444667888776543 2222
Q ss_pred CCCeeeCCCCCCC
Q 036619 338 STDIISIEQLAEE 350 (352)
Q Consensus 338 ~~~~~~l~~L~~~ 350 (352)
...+++.+++.+
T Consensus 157 -~~~i~~~~~~~~ 168 (324)
T 3u61_B 157 -CRVITFGQPTDE 168 (324)
T ss_dssp -SEEEECCCCCHH
T ss_pred -CcEEEeCCCCHH
Confidence 246778777644
No 33
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.16 E-value=7.8e-07 Score=70.53 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=62.6
Q ss_pred ccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHH
Q 036619 185 EVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIE 264 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 264 (352)
.++|+...+.++.+.+..... ...-+.|+|.+|+|||++|+.+++... -++.+.-..-....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHh------
Confidence 478988888888887754221 122366999999999999999987421 22322211100010
Q ss_pred HhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccC-CCCcEEEEecCC
Q 036619 265 GLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG-LHGSKILVTTRN 329 (352)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~IivTTR~ 329 (352)
...+.+. .+.-.|+||++.....+....+...+... ..+.+||.||..
T Consensus 67 ---------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ---------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 12347899999776544555666666543 345678777753
No 34
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=6.7e-06 Score=79.35 Aligned_cols=157 Identities=16% Similarity=0.165 Sum_probs=83.8
Q ss_pred CccccccchHHHHHHHHcCcccc-----------CCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCC
Q 036619 184 GEVCGRVDEKSELFSKLLCESSE-----------QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 252 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~-----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 252 (352)
..++|++..+++|.++|...... +....+.+.|+|++|+||||||+.+.+.. .+ ..+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 46899999999999998652100 01134688899999999999999999742 12 2344555554
Q ss_pred CCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCcc---ChhHHHHhhccCCCCcEEEEecCC
Q 036619 253 FDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYN---KWQPFFRCLKNGLHGSKILVTTRN 329 (352)
Q Consensus 253 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~---~~~~l~~~l~~~~~gs~IivTTR~ 329 (352)
.... ++...+........-..-...... .....+++.+|+||++...... .+..|...+... +..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 4432 222222222111000000000000 0012467889999999764322 235566665543 3335555443
Q ss_pred h---HHHHHhCCCCeeeCCCCCCC
Q 036619 330 E---SVARMMGSTDIISIEQLAEE 350 (352)
Q Consensus 330 ~---~va~~~~~~~~~~l~~L~~~ 350 (352)
. .+.........+++.+++.+
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~ 212 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDAN 212 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHH
T ss_pred CCCccchhhHhceEEEEeCCCCHH
Confidence 2 22222122446777777654
No 35
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.13 E-value=2.3e-06 Score=75.84 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=37.6
Q ss_pred CccccccchHHHHHHHHcCcccc-------CCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..+++|.+.+...... +-.....+.|+|++|+|||+||+.+++.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999998877432000 0022455889999999999999999874
No 36
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.13 E-value=3.5e-06 Score=67.23 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=58.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
-..+.|+|+.|+|||||++.++..... ..+ ..+++....-... .. ..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~~~~~-----------------------------~~-~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAASMPLT-----------------------------DA-AFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTTSCCC-----------------------------GG-GGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHHhhHH-----------------------------HH-HhC
Confidence 357889999999999999999985332 122 2556655432221 11 224
Q ss_pred eEEEEecCCCCCCccChhHHHHhhccC-CCCc-EEEEecCC--------hHHHHHhCCCCeeeCC
Q 036619 291 KNFLVLDDVWDGDYNKWQPFFRCLKNG-LHGS-KILVTTRN--------ESVARMMGSTDIISIE 345 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~IivTTR~--------~~va~~~~~~~~~~l~ 345 (352)
.-+|||||+...+...-+.+...+... ..|. .||+||+. +.++..+....+++++
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~l~ 148 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVK 148 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGGGSEECCCC
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHhcCeeEEec
Confidence 568899999764322233344443321 1233 48888874 3444444444445443
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.11 E-value=4.6e-06 Score=76.76 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=35.1
Q ss_pred CccccccchHHH---HHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSE---LFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|++..++. +...+.... .....+.|+|++|+|||+||+.+.+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 469999988766 444444332 22357889999999999999999975
No 38
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.09 E-value=3.4e-06 Score=76.14 Aligned_cols=140 Identities=16% Similarity=0.195 Sum_probs=79.0
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..++|++..+..+...+...... ......+.|+|++|+|||+||+.+++. ... ...+++.+......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~------- 78 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPG------- 78 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChH-------
Confidence 46899999988888877532110 022356789999999999999999874 222 22344433322211
Q ss_pred HHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC------------------CCcEEEE
Q 036619 264 EGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL------------------HGSKILV 325 (352)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~Iiv 325 (352)
.+...+...+ .+..+|+||++..........+...+.... ++.++|.
T Consensus 79 --------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 79 --------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp --------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred --------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1111111111 355689999997764444555655554321 2345666
Q ss_pred ecCChH-HHHHh-CC-CCeeeCCCCCCCc
Q 036619 326 TTRNES-VARMM-GS-TDIISIEQLAEEE 351 (352)
Q Consensus 326 TTR~~~-va~~~-~~-~~~~~l~~L~~~e 351 (352)
||.... +...+ .- ...+++.+++.+|
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e 172 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEE 172 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHH
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHH
Confidence 665432 11111 11 2578888887553
No 39
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.09 E-value=1.1e-05 Score=72.91 Aligned_cols=121 Identities=24% Similarity=0.309 Sum_probs=64.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
...+.|+|++|+||||||+.+++..... . ...++++.. .+...+...+... .... +...+. +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~-~~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-G-YRVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-T-CCEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-C-CEEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHhc-C
Confidence 4567899999999999999999853211 1 234455432 3333333333210 1111 122222 3
Q ss_pred eEEEEecCCCCCCc--cChhHHHHhhcc-CCCCcEEEEecCCh---------HHHHHhCCCCeeeCCCCCCC
Q 036619 291 KNFLVLDDVWDGDY--NKWQPFFRCLKN-GLHGSKILVTTRNE---------SVARMMGSTDIISIEQLAEE 350 (352)
Q Consensus 291 r~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~IivTTR~~---------~va~~~~~~~~~~l~~L~~~ 350 (352)
.-+|+|||+..... .....+...+.. ...|..||+||.+. .+...+....++++.+ +.+
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~ 169 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNK 169 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHH
Confidence 66999999976432 122334444431 12356788877532 2333333345678877 543
No 40
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.08 E-value=2.6e-05 Score=70.90 Aligned_cols=137 Identities=9% Similarity=0.086 Sum_probs=79.1
Q ss_pred cchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhc--------------------cCCeEEEEEe
Q 036619 190 VDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKR--------------------NFEKVIWVCV 249 (352)
Q Consensus 190 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v 249 (352)
++..+.+.+.+.... -...+.++|+.|+|||++|+.+.+.-.... |++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 344556666664432 245688999999999999998886421111 122 122221
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhc-----CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEE
Q 036619 250 SDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSI-----KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKIL 324 (352)
Q Consensus 250 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii 324 (352)
.. .......+++.. +.+.+ .+++-++|+|++...+.+..+.|...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001112222222 22222 3567899999998776566777888887666667777
Q ss_pred EecCCh-HHHHHh-CCCCeeeCCCCCCCc
Q 036619 325 VTTRNE-SVARMM-GSTDIISIEQLAEEE 351 (352)
Q Consensus 325 vTTR~~-~va~~~-~~~~~~~l~~L~~~e 351 (352)
++|.+. .+...+ +-...+++.++++++
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~ 171 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQY 171 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHH
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHH
Confidence 776654 333333 335578888887654
No 41
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.08 E-value=1.7e-05 Score=69.10 Aligned_cols=51 Identities=24% Similarity=0.173 Sum_probs=34.5
Q ss_pred CccccccchHHHHHHHHc---Cccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLL---CESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..++.|.+++. .... -+....+.+.|+|++|+|||+||+.+++.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 468898888777755542 2110 00122455779999999999999999974
No 42
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.05 E-value=1.1e-05 Score=82.71 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++||++++.++++.|.... ...+.++|++|+|||+||+.+.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999986533 234578999999999999999875
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.05 E-value=1.7e-05 Score=69.82 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=33.2
Q ss_pred ccccccchHHHHHH-------HHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 185 EVCGRVDEKSELFS-------KLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 185 ~~~gr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++|.....++++. .+.... ......+.|+|++|+|||+||+.+++.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 46677666666555 232111 145678889999999999999999984
No 44
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=1.1e-05 Score=73.42 Aligned_cols=139 Identities=14% Similarity=0.133 Sum_probs=79.4
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCC-eEEEEEeCCCCCHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 262 (352)
..++|.+..++.|...+.... +..+.++|++|+||||+|+.+...-. ...+. ...-++.+......
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~------ 91 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGID------ 91 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHH------
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHH------
Confidence 347788877788777775432 22378999999999999999987421 11111 12222333222221
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHh------cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCCh-HHHHH
Q 036619 263 IEGLGKSASGLNEFQSLMSRIQSS------IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNE-SVARM 335 (352)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~------l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va~~ 335 (352)
.+...+... +.+.+-++|+|++........+.|...+......+.+|++|... .+...
T Consensus 92 ---------------~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 92 ---------------VVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp ---------------HHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred ---------------HHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 111111111 12347789999997665455667777776555566677766443 22222
Q ss_pred h-CCCCeeeCCCCCCC
Q 036619 336 M-GSTDIISIEQLAEE 350 (352)
Q Consensus 336 ~-~~~~~~~l~~L~~~ 350 (352)
+ +-...+++.+++++
T Consensus 157 i~sR~~~~~~~~l~~~ 172 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQE 172 (340)
T ss_dssp HHTTSEEEECCCCCHH
T ss_pred HHhhceeEeccCCCHH
Confidence 2 22346778777754
No 45
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.03 E-value=1.1e-05 Score=73.34 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=79.4
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..++|++..++.+..++..... .......+.|+|++|+|||+||+.+.+. .... .+.++.+....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~--------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEK--------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCS---------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccc---------
Confidence 4689999999999888864321 0123456789999999999999999864 2222 22233322111
Q ss_pred HHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC------------------CCcEEEE
Q 036619 264 EGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL------------------HGSKILV 325 (352)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~Iiv 325 (352)
...+...+.. ..+..+|+||++..........|...+.... ++..+|.
T Consensus 94 ------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 94 ------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp ------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred ------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 1111111211 2456789999997765445555666665432 1234555
Q ss_pred ecCCh-HHHHHh-CC-CCeeeCCCCCCCc
Q 036619 326 TTRNE-SVARMM-GS-TDIISIEQLAEEE 351 (352)
Q Consensus 326 TTR~~-~va~~~-~~-~~~~~l~~L~~~e 351 (352)
+|... .+...+ .- ...+++.+++.++
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e 188 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSE 188 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHH
Confidence 55442 222111 11 3578888887553
No 46
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.88 E-value=2e-05 Score=70.66 Aligned_cols=124 Identities=14% Similarity=0.261 Sum_probs=68.4
Q ss_pred CccccccchHHHHHHHHcCccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAK 260 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 260 (352)
..++|.+..++.+...+..... ........+.++|++|+|||+||+.+.+. ....-...+.++++...... ...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHH
Confidence 3478888888888777754311 01123467899999999999999999874 22211234555554432211 111
Q ss_pred HHHHHhCCCCC--CcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhcc
Q 036619 261 AIIEGLGKSAS--GLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKN 316 (352)
Q Consensus 261 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~ 316 (352)
.+ ++.... +......+...+. ....-+|+||++..........|...+..
T Consensus 94 ~l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 94 RL---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDD 145 (311)
T ss_dssp HH---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred Hh---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhc
Confidence 11 222111 1111112222222 22346999999977665566777777654
No 47
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.87 E-value=0.00017 Score=60.85 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=55.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCC------------CCCCcccHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGK------------SASGLNEFQ 277 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~------------~~~~~~~~~ 277 (352)
.-.++.|+|.+|+|||||+..+.. ..-..++|+.....++...+.. +...++. ......+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346899999999999999998886 1224688888777666655443 3333221 111222334
Q ss_pred HHHHHHHHhcCCceEEEEecCCCCC
Q 036619 278 SLMSRIQSSIKGKKNFLVLDDVWDG 302 (352)
Q Consensus 278 ~~~~~l~~~l~~kr~LlVlDdvw~~ 302 (352)
.....++..+..+.-+||||.+-..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 4555666666555779999998543
No 48
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.86 E-value=1.7e-05 Score=69.49 Aligned_cols=133 Identities=13% Similarity=0.205 Sum_probs=67.4
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..++|....+.++.+.+..... ....+.|+|.+|+|||+||+.+++... ... ...+.++++.. .. ..+...+
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~-~~~-~~~~~v~~~~~-~~-~~~~~~l 77 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSS-RWQ-GPFISLNCAAL-NE-NLLDSEL 77 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTST-TTT-SCEEEEEGGGS-CH-HHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcC-ccC-CCeEEEecCCC-Ch-hHHHHHh
Confidence 3478999888888877654221 123467999999999999999997421 111 12344555543 22 2222111
Q ss_pred HHhCCCCCCcccH-HHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccC-----------CCCcEEEEecCC
Q 036619 264 EGLGKSASGLNEF-QSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG-----------LHGSKILVTTRN 329 (352)
Q Consensus 264 ~~l~~~~~~~~~~-~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivTTR~ 329 (352)
++......... ......+. ....-+|+||++..........|...+..+ ....+||.||..
T Consensus 78 --~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 78 --FGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp --HCCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred --cCCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 11110000000 00000011 112458999999876544555566666532 124578877765
No 49
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.84 E-value=6.3e-05 Score=67.13 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=36.7
Q ss_pred CccccccchHHHHHHHHcCccc--------cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESS--------EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..++.+...+...-. ........+.|+|++|+|||+||+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999888877754100 00022346779999999999999999874
No 50
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.82 E-value=8e-05 Score=67.22 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=37.4
Q ss_pred CccccccchHHHHHHHHcCcc------ccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCES------SEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..++.|.+.+.... .......+-+.|+|++|+|||+||+.+++.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 468999999998888772110 001123456889999999999999999974
No 51
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.81 E-value=2.5e-05 Score=69.95 Aligned_cols=132 Identities=12% Similarity=0.140 Sum_probs=70.2
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
..++|+...+.++.+.+..... ....+.|+|.+|+|||++|+.+++... +.. ...+.++++.-. ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~-~~~v~v~~~~~~--~~l~~~-- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSA-RSD-RPLVTLNCAALN--ESLLES-- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSS-CSS-SCCCEEECSSCC--HHHHHH--
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCc-ccC-CCeEEEeCCCCC--hHHHHH--
Confidence 3578999898888887755331 123466999999999999999987421 111 122334544322 222222
Q ss_pred HHhCCCCCCc-ccH-HHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC-----------CCcEEEEecCC
Q 036619 264 EGLGKSASGL-NEF-QSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTTRN 329 (352)
Q Consensus 264 ~~l~~~~~~~-~~~-~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTTR~ 329 (352)
.+.+...+. ... ......+... ..-+|+||++..........|...+.... ...+||.||..
T Consensus 72 -~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 72 -ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp -HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred -HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 222211100 000 0000111111 12478999998765445556666665431 24577777765
No 52
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.80 E-value=2.9e-05 Score=73.87 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++||+.++.+++..|.... ..-+.|+|++|+|||+||+.+.+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999986533 233569999999999999999874
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.74 E-value=0.00014 Score=64.87 Aligned_cols=51 Identities=25% Similarity=0.206 Sum_probs=36.8
Q ss_pred CccccccchHHHHHHHHcCcc-------ccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCES-------SEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..+++|.+.+...- .-+-...+.+.|+|++|+|||+||+.+++.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 458899888888877664210 000123457889999999999999999974
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.68 E-value=0.00017 Score=72.86 Aligned_cols=45 Identities=27% Similarity=0.245 Sum_probs=37.6
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++||+.++.++++.|.... ..-+.|+|++|+|||+||+.+.+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999986543 234579999999999999999874
No 55
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.64 E-value=0.00039 Score=61.73 Aligned_cols=51 Identities=24% Similarity=0.246 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHHcCccc------cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESS------EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..++.|.+.+..+.. .-......+.|+|++|+|||+||+.+.+.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4689999999888887632110 00122457789999999999999999874
No 56
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.61 E-value=0.00093 Score=60.19 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=36.4
Q ss_pred CccccccchHHHHHHHHcCc----cc--cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCE----SS--EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|.++.++.|.+.+..+ .- ......+-+.|+|++|+|||+||+.+++.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 46889888888887665311 00 01123467889999999999999999974
No 57
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.60 E-value=0.00012 Score=67.08 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHHcCc----cc--cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCE----SS--EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..++.|.+.+... .- ......+.+.|+|++|+|||+||+.+++.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999888876421 00 00123567889999999999999999874
No 58
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.57 E-value=7.2e-05 Score=67.11 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=26.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEe
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 249 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 249 (352)
...+.|+|++|+|||+||..+++....... ..+.++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g-~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG-VSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC-CCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEH
Confidence 356789999999999999999985321222 33455554
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.57 E-value=0.0002 Score=72.42 Aligned_cols=124 Identities=15% Similarity=0.274 Sum_probs=73.7
Q ss_pred CccccccchHHHHHHHHcCcccc---CCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESSE---QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAK 260 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 260 (352)
..++|.+..++.+...+...... .......+.++|++|+|||+||+.+.+. ....-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 46899999888888777543211 1123457889999999999999999874 22222234455554322100
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccC-----------CCCcEEEEecC
Q 036619 261 AIIEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNG-----------LHGSKILVTTR 328 (352)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivTTR 328 (352)
. .....+...++. ...-+|+||++.....+....|...+..+ ....+||+||.
T Consensus 565 ----------~--~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 565 ----------S--TSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ----------C--CC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ----------c--cccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0 001111112221 23348999999877666677777777652 12457888886
No 60
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.55 E-value=4.5e-05 Score=68.14 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=45.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEe--CCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV--SDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (352)
.+++.|+|++|+|||+||..+... .-..++|+++ ....+. . ..+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHh
Confidence 456789999999999999988864 1123566776 332110 0 0345555666666665
Q ss_pred CceEEEEecCCCCC
Q 036619 289 GKKNFLVLDDVWDG 302 (352)
Q Consensus 289 ~kr~LlVlDdvw~~ 302 (352)
..+ +||+|++...
T Consensus 182 ~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 182 QHR-VIVIDSLKNV 194 (331)
T ss_dssp HCS-EEEEECCTTT
T ss_pred hCC-EEEEeccccc
Confidence 555 9999999653
No 61
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.51 E-value=0.00018 Score=65.80 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=36.7
Q ss_pred CccccccchHHHHHHHHcCc----cc--cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCE----SS--EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..++.|.+.+... .. ......+-+.|+|++|+|||+||+.+++.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999888776311 00 01122345779999999999999999984
No 62
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.51 E-value=0.0005 Score=64.88 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=37.3
Q ss_pred CccccccchHHHHHHHHcCc----c--ccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCE----S--SEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..++.|.+.+..+ . .......+-+.|+|++|+|||+||+.+++.
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999888888776311 0 001123467889999999999999999974
No 63
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.50 E-value=0.0004 Score=59.47 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=54.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhc----cCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CcccHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---------GLNEFQ 277 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 277 (352)
-.++.|+|++|+|||||+..+........ .-..++|+.....++...+. .+++.++.... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46899999999999999998886421211 13568888887765655443 34444443210 011222
Q ss_pred ---HHHHHHHHhcC-CceEEEEecCCCC
Q 036619 278 ---SLMSRIQSSIK-GKKNFLVLDDVWD 301 (352)
Q Consensus 278 ---~~~~~l~~~l~-~kr~LlVlDdvw~ 301 (352)
.+...+.+.+. .+.-+||||.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 23334555553 4677999999865
No 64
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.44 E-value=0.0004 Score=64.33 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=37.4
Q ss_pred CccccccchHHHHHHHHcCccc------cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESS------EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..++.|...+..... ......+-+.|+|++|+|||+||+.+++.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999998887732110 00122457789999999999999999874
No 65
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.43 E-value=0.0002 Score=68.30 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=36.9
Q ss_pred CccccccchHHHHHHHHcCcccc-------CCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSE-------QQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..+++|.+++...-.. +.....-+.|+|++|+|||+||+.+.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999888876432000 0123455789999999999999999874
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.35 E-value=0.00021 Score=72.25 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++||+.++++++..|.... ..-+.++|++|+|||++|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999986533 223679999999999999999874
No 67
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.33 E-value=0.00049 Score=61.14 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+..+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999984
No 68
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.29 E-value=0.0009 Score=56.72 Aligned_cols=115 Identities=17% Similarity=0.076 Sum_probs=62.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------------------
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS------------------- 271 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------------- 271 (352)
-.++.|+|++|+|||||++.+....... -..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 3688999999999999999888542211 23466665543 3444443332 3322110
Q ss_pred ----CcccHHHHHHHHHHhc---CCceEEEEecCCCCC---CccChhHHHHhhcc--CCCCcEEEEecCCh
Q 036619 272 ----GLNEFQSLMSRIQSSI---KGKKNFLVLDDVWDG---DYNKWQPFFRCLKN--GLHGSKILVTTRNE 330 (352)
Q Consensus 272 ----~~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~ 330 (352)
...+..++...+...+ +.+..+||||..-.. +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0114455555555544 223349999998632 22233444444432 12477899998876
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.28 E-value=0.0003 Score=72.05 Aligned_cols=135 Identities=15% Similarity=0.232 Sum_probs=72.8
Q ss_pred ccccccchHHHHHHHHcCcccc---CCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHH
Q 036619 185 EVCGRVDEKSELFSKLLCESSE---QQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKA 261 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 261 (352)
.++|.+..+..+...+.....+ .......+.|+|++|+|||+||+.+.+.- ...-...+.++++...... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~--~~~~~~~i~i~~~~~~~~~-~--- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH-A--- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH--HSSGGGEEEECTTTCCSSG-G---
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhccchh-H---
Confidence 5789998888887777543210 11234678899999999999999998742 1111123444444322210 0
Q ss_pred HHHHhCCCCC---CcccHHHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC-----------CCcEEEEec
Q 036619 262 IIEGLGKSAS---GLNEFQSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVTT 327 (352)
Q Consensus 262 i~~~l~~~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTT 327 (352)
...+.+..+ +......+...++. ...-+|+||++.....+..+.|...+..+. .+..||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 011111111 00111122222222 223589999998776666777777776441 244477777
Q ss_pred CC
Q 036619 328 RN 329 (352)
Q Consensus 328 R~ 329 (352)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 70
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.28 E-value=0.00033 Score=59.50 Aligned_cols=110 Identities=14% Similarity=-0.001 Sum_probs=63.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHHhcC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS--GLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 288 (352)
-.++.|.|..|+||||++..+.... ..+-..++.+...... . ....|+..++.... ......++...+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 4788899999999999997776643 2222234444433321 1 12234444433211 12234556666666665
Q ss_pred CceE-EEEecCCCCCCccChhHHHHhhccCCCCcEEEEecC
Q 036619 289 GKKN-FLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTR 328 (352)
Q Consensus 289 ~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR 328 (352)
+.++ +||+|.+..-..+..+.+ ..+.+. |-.||+|-+
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l-~~L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVA-NILAEN--GFVVIISGL 124 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHH-HHHHHT--TCEEEEECC
T ss_pred CCCCCEEEEecCccCcHHHHHHH-HHHHhC--CCeEEEEec
Confidence 5555 999999976433333333 333332 778999998
No 71
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0031 Score=58.99 Aligned_cols=51 Identities=22% Similarity=0.165 Sum_probs=36.2
Q ss_pred CccccccchHHHHHHHHcC----ccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLC----ESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|-++.+++|.+.+.- ++- -+-..++-+.++|++|+|||+||+.+++.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 5678888888777665432 110 01234567889999999999999999984
No 72
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.25 E-value=0.00096 Score=63.25 Aligned_cols=98 Identities=20% Similarity=0.169 Sum_probs=54.3
Q ss_pred CccccccchHHHHHHHHc---Cccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHH
Q 036619 184 GEVCGRVDEKSELFSKLL---CESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIR 257 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (352)
.+++|.++.++++.+.+. .... -+....+-+.|+|++|+|||+||+.+.+.. ...| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCCe---eeCCHHHHHHH--
Confidence 458898887776655432 2100 000112347799999999999999999842 2222 33443322110
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCC
Q 036619 258 IAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWD 301 (352)
Q Consensus 258 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 301 (352)
+ .+ .....+...+.........+|+||++..
T Consensus 89 --------~----~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 89 --------F----VG-VGAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp --------C----TT-HHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred --------H----hc-ccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 0 00 0112223334444456789999999955
No 73
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.22 E-value=0.00076 Score=58.52 Aligned_cols=51 Identities=27% Similarity=0.227 Sum_probs=33.4
Q ss_pred CccccccchHHHHHHH---HcCcccc---CCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSK---LLCESSE---QQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~---L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..++++.+. +.....- +....+-+.|+|++|+||||||+.+.+.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4688988777766544 3221100 0011334779999999999999999874
No 74
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.21 E-value=0.0014 Score=59.67 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=56.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHHHHHHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSLMSRIQ 284 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (352)
.-.++.|+|++|+|||||+..+..... ..=..++|+.....++.. .++.++.... ...+.+++...+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 457999999999999999988886432 222357888887777654 3445544321 2234556666666
Q ss_pred HhcC-CceEEEEecCCCC
Q 036619 285 SSIK-GKKNFLVLDDVWD 301 (352)
Q Consensus 285 ~~l~-~kr~LlVlDdvw~ 301 (352)
..+. .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5553 4556999999854
No 75
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.17 E-value=0.0034 Score=57.00 Aligned_cols=92 Identities=16% Similarity=0.256 Sum_probs=58.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhc----cCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC------------CC
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFDQIRIAKAIIEGLGKSA------------SG 272 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------~~ 272 (352)
+.-.++.|+|.+|+||||||..+........ .-..++|++....++...+.. ++..++... ..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 4457999999999999999988876422211 234788999988877776543 344444321 11
Q ss_pred cccHHHHHHHHHHhcC---CceEEEEecCCCC
Q 036619 273 LNEFQSLMSRIQSSIK---GKKNFLVLDDVWD 301 (352)
Q Consensus 273 ~~~~~~~~~~l~~~l~---~kr~LlVlDdvw~ 301 (352)
.....++...+...+. .+--|||+|.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 2223344444555553 4566999999853
No 76
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.14 E-value=0.0029 Score=56.30 Aligned_cols=85 Identities=11% Similarity=0.138 Sum_probs=55.5
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHH-HHHHHHh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSL-MSRIQSS 286 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~~ 286 (352)
++-|.|++|+|||||+.++.....-...-..++||+....++.. .+++++.... ...+.+++ ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999997776543221113578999988888764 2566665432 12345554 3333332
Q ss_pred --c-CCceEEEEecCCCCC
Q 036619 287 --I-KGKKNFLVLDDVWDG 302 (352)
Q Consensus 287 --l-~~kr~LlVlDdvw~~ 302 (352)
+ .++.-|||+|-+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 3 456789999998653
No 77
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.10 E-value=0.00069 Score=68.41 Aligned_cols=133 Identities=16% Similarity=0.224 Sum_probs=73.4
Q ss_pred CccccccchHHHHHHHHcCccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHH
Q 036619 184 GEVCGRVDEKSELFSKLLCESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAK 260 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 260 (352)
..++|.+..++.+...+..... ........+.++|++|+|||+||+.+.+.. . ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 4578888888887776643221 011234578899999999999999998742 1 2334455444222100
Q ss_pred HHHHHhCCCCCCcccH---HHHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCC-----------CCcEEEEe
Q 036619 261 AIIEGLGKSASGLNEF---QSLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGL-----------HGSKILVT 326 (352)
Q Consensus 261 ~i~~~l~~~~~~~~~~---~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivT 326 (352)
...+.+..++.... ..+...++ .....+|+||++.....+..+.|...+..+. ....||.|
T Consensus 530 --~~~l~g~~~g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp --CSSSCCCCSCSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred --HhhhcCCCCCCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 00111111111111 11222222 2345799999998776666777777776431 23447777
Q ss_pred cCC
Q 036619 327 TRN 329 (352)
Q Consensus 327 TR~ 329 (352)
|-.
T Consensus 605 sN~ 607 (758)
T 1r6b_X 605 TNA 607 (758)
T ss_dssp ECS
T ss_pred cCc
Confidence 653
No 78
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.10 E-value=0.0017 Score=58.35 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=57.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhc---------cC-----CeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKR---------NF-----EKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---- 271 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---- 271 (352)
.-.++.|+|.+|+||||||..+..+..... .. ..++|++....++..++.. +++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 357899999999999999988775422111 11 4789999888887776654 3455543210
Q ss_pred -----CcccHH---HHHHHHHHhcC--CceEEEEecCCC
Q 036619 272 -----GLNEFQ---SLMSRIQSSIK--GKKNFLVLDDVW 300 (352)
Q Consensus 272 -----~~~~~~---~~~~~l~~~l~--~kr~LlVlDdvw 300 (352)
...+.+ ++...+...+. .+.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 112222 34455656554 456699999984
No 79
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.09 E-value=0.0021 Score=58.56 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=55.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHHHHHHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSLMSRIQ 284 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (352)
.-.++.|+|.+|+||||||..+..... ..=..++|++....++.. .++.++.... ...+.+++...+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 356899999999999999988876422 222468899988777653 2444443211 1234556556665
Q ss_pred HhcC-CceEEEEecCCCC
Q 036619 285 SSIK-GKKNFLVLDDVWD 301 (352)
Q Consensus 285 ~~l~-~kr~LlVlDdvw~ 301 (352)
.... .+.-+||+|.+-.
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 5554 3456999999854
No 80
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.07 E-value=0.0025 Score=58.36 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=55.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHHHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSLMSRIQS 285 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 285 (352)
-.++.|.|.+|+||||||..+..... ..-..++|++....++.. .++.++.... ...+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 45788899999999999987776422 223478999998877654 2344443211 12345666666766
Q ss_pred hcCC-ceEEEEecCCCC
Q 036619 286 SIKG-KKNFLVLDDVWD 301 (352)
Q Consensus 286 ~l~~-kr~LlVlDdvw~ 301 (352)
.++. .--+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 6643 445999999854
No 81
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.04 E-value=0.0014 Score=63.42 Aligned_cols=51 Identities=24% Similarity=0.286 Sum_probs=34.6
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.++-...+.+.+.-..-.......++.++|++|+||||||+.+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 357887777776655442111001123568999999999999999999874
No 82
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.04 E-value=0.0029 Score=56.96 Aligned_cols=90 Identities=20% Similarity=0.268 Sum_probs=57.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhcc----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CcccHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---------GLNEFQ 277 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 277 (352)
-.++.|+|.+|+||||||..+......... -..++|++....++..++.. +++.++.... ...+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468899999999999999888764211110 24789999888887776653 4455543210 111222
Q ss_pred ---HHHHHHHHhcC--CceEEEEecCCCC
Q 036619 278 ---SLMSRIQSSIK--GKKNFLVLDDVWD 301 (352)
Q Consensus 278 ---~~~~~l~~~l~--~kr~LlVlDdvw~ 301 (352)
++...+...+. .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 34455555553 4667999999843
No 83
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.02 E-value=0.0013 Score=54.38 Aligned_cols=117 Identities=15% Similarity=0.055 Sum_probs=65.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCC---CCHHHHHHHHHHHh---CCCCC-Cc-------ccHH
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT---FDQIRIAKAIIEGL---GKSAS-GL-------NEFQ 277 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l---~~~~~-~~-------~~~~ 277 (352)
..|-|++..|.||||+|--..-. .-.+=-.+.++..-+. .....++..+.-.+ +..-. .. ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 45667777789999999665542 2233234555544332 22333333321000 00000 00 0122
Q ss_pred HHHHHHHHhcCCceE-EEEecCCCC---CCccChhHHHHhhccCCCCcEEEEecCCh
Q 036619 278 SLMSRIQSSIKGKKN-FLVLDDVWD---GDYNKWQPFFRCLKNGLHGSKILVTTRNE 330 (352)
Q Consensus 278 ~~~~~l~~~l~~kr~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (352)
.....+++.+.+.+| |||||++-. ...-..+.+...+.......-||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 334556666766666 999999832 12245677878887666677799999986
No 84
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.02 E-value=0.0029 Score=50.87 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=18.6
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 036619 212 QVISLVGLGGIGKTTLAQLA 231 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v 231 (352)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 85
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.92 E-value=0.002 Score=60.94 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=34.6
Q ss_pred CccccccchHHHHHHH---HcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSK---LLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~---L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.++.++.+..+ +.... ...+-+.++|++|+|||+||+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKK----MAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCC----CCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 5689999887765443 33322 22355779999999999999999985
No 86
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.90 E-value=0.0019 Score=58.86 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=54.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHHHHHHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSLMSRIQ 284 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (352)
.-.++.|.|.+|+||||||..+..... ..-..++|++....++... +..++.... ...+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346889999999999999988776432 2224688999888776432 344443211 1123455555555
Q ss_pred HhcC-CceEEEEecCCCC
Q 036619 285 SSIK-GKKNFLVLDDVWD 301 (352)
Q Consensus 285 ~~l~-~kr~LlVlDdvw~ 301 (352)
...+ .+--+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 4442 4455999999854
No 87
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.89 E-value=0.001 Score=55.44 Aligned_cols=43 Identities=30% Similarity=0.316 Sum_probs=33.1
Q ss_pred ccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 189 RVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
|++.++.|.+.+..... ....+++|+|..|+|||||++.+...
T Consensus 3 ~~~~~~~l~~~~~~~~~---~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKT---AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHHTSCC---SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44566777777765431 34689999999999999999998863
No 88
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.88 E-value=0.0048 Score=54.79 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+++++|.+|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999888764
No 89
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0028 Score=59.12 Aligned_cols=51 Identities=24% Similarity=0.180 Sum_probs=36.5
Q ss_pred CccccccchHHHHHHHHcCccc-------cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESS-------EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|-++.+++|.+.+.-+-. -+-..++-+.++|++|+|||+||+.+.+.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5678888888887665532100 01234566889999999999999999984
No 90
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.0023 Score=59.00 Aligned_cols=51 Identities=22% Similarity=0.143 Sum_probs=35.6
Q ss_pred CccccccchHHHHHHHHcC----ccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLC----ESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|-++.+++|.+.+.- ++- -+-..++-+.++|++|.|||.||+.+.+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 4678888887777655421 110 01233566789999999999999999984
No 91
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.78 E-value=0.0056 Score=54.19 Aligned_cols=39 Identities=21% Similarity=0.107 Sum_probs=27.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 250 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 250 (352)
-.++.|+|.+|+|||||++.+........ -..++|+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence 46899999999999999998887532221 1146666543
No 92
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0021 Score=60.00 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=36.8
Q ss_pred CccccccchHHHHHHHHc----Cccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLL----CESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|-++.+++|.+.+. .++- -+-..++-+.++|++|+|||.||+.+.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 568888888888776542 2110 01234567889999999999999999984
No 93
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.74 E-value=0.0038 Score=57.37 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+.++|++|+|||+||+.+.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999974
No 94
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.72 E-value=0.013 Score=51.84 Aligned_cols=55 Identities=16% Similarity=0.098 Sum_probs=33.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhc-cCCeEEEEEeCCCCCHHHHHHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKR-NFEKVIWVCVSDTFDQIRIAKAII 263 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~ 263 (352)
....+|+|+|..|+||||||+.+........ .......|+...-+-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 4578999999999999999998876432211 123344445444333333444443
No 95
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.67 E-value=0.0038 Score=62.78 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=56.9
Q ss_pred CccccccchHHHHHHHHc----Cccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHH
Q 036619 184 GEVCGRVDEKSELFSKLL----CESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQI 256 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (352)
.++.|-++.+++|.+.+. .++- -+-..++-|.++|++|+|||+||+.+++. ...+ .+.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH-----
Confidence 457788888877766542 2211 01234567889999999999999999984 2222 23343221
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCceEEEEecCCCC
Q 036619 257 RIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKKNFLVLDDVWD 301 (352)
Q Consensus 257 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 301 (352)
+... ........+...+.......+.+|+||++..
T Consensus 274 -----l~sk-----~~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 274 -----IMSK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp -----HHSS-----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred -----hhcc-----cchHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 1110 0011122233333444467789999999854
No 96
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.66 E-value=0.019 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|.|||||.+.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 97
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.63 E-value=0.0018 Score=54.32 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=28.4
Q ss_pred HHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 193 KSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++|.+.+.... ....+++|+|+.|+|||||++.+..-
T Consensus 8 ~~~~~~~~~~~~----~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 8 CQGVLERLDPRQ----PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHSCTTC----CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345555554331 45689999999999999999998864
No 98
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.63 E-value=0.019 Score=49.33 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 99
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.61 E-value=0.012 Score=56.12 Aligned_cols=51 Identities=29% Similarity=0.281 Sum_probs=33.3
Q ss_pred CccccccchHHHHHHHH---cCcccc---CCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKL---LCESSE---QQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L---~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+++|.++.+.++.+.. .....- +-.-.+-+.|+|++|+||||||+.+...
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46889887766665543 221100 0011223889999999999999999974
No 100
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0023 Score=59.87 Aligned_cols=51 Identities=25% Similarity=0.193 Sum_probs=36.0
Q ss_pred CccccccchHHHHHHHHc----Cccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLL----CESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|-++.+++|.+.+. .++- -+-..++-|.++|++|+|||.||+.+.+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 467888888887766532 1110 01234667789999999999999999984
No 101
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.57 E-value=0.0026 Score=64.49 Aligned_cols=51 Identities=22% Similarity=0.174 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHHcCc----cc---cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCE----SS---EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..+++|.+++... .- -.-.....+.|+|++|+||||||+.+...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999998888876421 00 01123456889999999999999999873
No 102
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.54 E-value=0.026 Score=50.97 Aligned_cols=119 Identities=9% Similarity=0.005 Sum_probs=75.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-hcCC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQS-SIKG 289 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~ 289 (352)
..+..++|+.|.||++.++.+..... ...|+....+.+....+.. ++.+.+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------------------~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWN---------------------AIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHH---------------------HHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHH---------------------HHHHHhcCcCCcc
Confidence 56888999999999999988887422 2345432222333333333 33333322 1245
Q ss_pred ceEEEEecCCCC-CCccChhHHHHhhccCCCCcEEEEecCC-------hHHHHHhCC-CCeeeCCCCCCCc
Q 036619 290 KKNFLVLDDVWD-GDYNKWQPFFRCLKNGLHGSKILVTTRN-------ESVARMMGS-TDIISIEQLAEEE 351 (352)
Q Consensus 290 kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~IivTTR~-------~~va~~~~~-~~~~~l~~L~~~e 351 (352)
.+-++|+|++.. ...+.++.|...+....+++.+|++|.. ..+...+.. ...++..++++++
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~ 146 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQ 146 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHH
Confidence 677888999976 5556788898888876667777766532 345555443 5678888887654
No 103
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.53 E-value=0.013 Score=53.28 Aligned_cols=92 Identities=24% Similarity=0.308 Sum_probs=54.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccC----CeEEEEEeCCCCCHHHHHHHHHHHhCCCC------------CC
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNF----EKVIWVCVSDTFDQIRIAKAIIEGLGKSA------------SG 272 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------~~ 272 (352)
+.-.++.|+|+.|+|||||+..+.......... ..++|++....+....+ ..+.+..+... ..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 346899999999999999999888642111111 24588887766544433 33444333211 00
Q ss_pred cccHHHHHHHHHHhcC------CceEEEEecCCCC
Q 036619 273 LNEFQSLMSRIQSSIK------GKKNFLVLDDVWD 301 (352)
Q Consensus 273 ~~~~~~~~~~l~~~l~------~kr~LlVlDdvw~ 301 (352)
.....++...+...+. .+.-|||||.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 1112334445555553 4677999999854
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.47 E-value=0.00084 Score=55.27 Aligned_cols=107 Identities=13% Similarity=0.024 Sum_probs=51.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC--CCcccHHHHHHHHHHhcCC
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSA--SGLNEFQSLMSRIQSSIKG 289 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~ 289 (352)
.++.|+|+.|+||||++..+....... .. .++.+...... ......+...++... ....+. ..+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~-~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~~~~----~~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-KK-KVAVFKPKIDS--RYHSTMIVSHSGNGVEAHVIERP----EEMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TC-EEEEEEEC-------CCCEECC----CEECEEESSG----GGGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEeecccc--ccCcccEEecCCCceeeEEECCH----HHHHHHhcC
Confidence 477899999999999995555432222 22 23333322110 000000000111100 001111 122233344
Q ss_pred ceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC
Q 036619 290 KKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN 329 (352)
Q Consensus 290 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (352)
+.-+|++|.+..-+. .|......+.+. |..|++|.++
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEES
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeec
Confidence 566999999977643 355544434333 6779988774
No 105
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.46 E-value=0.015 Score=53.90 Aligned_cols=91 Identities=16% Similarity=0.243 Sum_probs=53.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhc----cCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CcccH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---------GLNEF 276 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 276 (352)
.-.++.|+|++|+|||||+..++-...... .-..++|++....++...+. .+++.++.... ...+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCCh
Confidence 346899999999999999987653211111 23468889887776665543 35555553211 01112
Q ss_pred ---HHHHHHHHHhc-CCceEEEEecCCCC
Q 036619 277 ---QSLMSRIQSSI-KGKKNFLVLDDVWD 301 (352)
Q Consensus 277 ---~~~~~~l~~~l-~~kr~LlVlDdvw~ 301 (352)
..+...+...+ ..+.-+||+|.+-.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 22333333333 34677999999754
No 106
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.44 E-value=0.0016 Score=59.01 Aligned_cols=50 Identities=30% Similarity=0.368 Sum_probs=34.4
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..++.+...+..... ....+..+.|+|++|+||||||+.+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3577877666666555532210 0123467899999999999999999984
No 107
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.43 E-value=0.01 Score=53.11 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=32.0
Q ss_pred ccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 187 CGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 187 ~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
+|....+..+...++.... ...+.+++|.|+.|+|||||++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4444455555555554431 25678999999999999999998875
No 108
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.39 E-value=0.0022 Score=52.70 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++.|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999863
No 109
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.35 E-value=0.008 Score=52.69 Aligned_cols=21 Identities=43% Similarity=0.534 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (352)
+.|+|++|+||||||+.+...
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999999974
No 110
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.28 E-value=0.0025 Score=51.62 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 111
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.27 E-value=0.0022 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.146 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+|.|.|+.|+||||+++.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998864
No 112
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.25 E-value=0.56 Score=43.98 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=53.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHH-hC----------------------
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEG-LG---------------------- 267 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~---------------------- 267 (352)
-.++.|.|.+|+|||||+..+..+.... .-..++|++... +...+...++.. .+
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a 279 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMA 279 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 4688899999999999998888753322 223577776543 334444443321 11
Q ss_pred -----CC-----CCCcccHHHHHHHHHHhcC-CceEEEEecCCCCC
Q 036619 268 -----KS-----ASGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWDG 302 (352)
Q Consensus 268 -----~~-----~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~ 302 (352)
.. .....+..++...++.... .+.-+||+|.+...
T Consensus 280 ~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 280 MGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGS
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHh
Confidence 00 1112245666666666553 34569999988553
No 113
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.21 E-value=0.0025 Score=52.94 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|+|++|+||||+++.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999863
No 114
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.20 E-value=0.0025 Score=51.70 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999863
No 115
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.20 E-value=0.0028 Score=51.79 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999863
No 116
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.0039 Score=57.86 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=36.0
Q ss_pred CccccccchHHHHHHHHcC----ccc---cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLC----ESS---EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|-++.+++|.+.+.- ++- -+-..++-|.++|++|.|||.||+.+.+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 4677888887777665421 110 01234567889999999999999999984
No 117
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.16 E-value=0.015 Score=54.64 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=54.1
Q ss_pred HHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCC-HHHHHHHHHHHhC-------
Q 036619 196 LFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFD-QIRIAKAIIEGLG------- 267 (352)
Q Consensus 196 l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~------- 267 (352)
.++.|..-.. -..++|+|..|+|||||++.+..+.... +-+.++++.+.+..+ ...++.++...-.
T Consensus 141 ~ID~L~pi~k-----Gq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv 214 (473)
T 1sky_E 141 VVDLLAPYIK-----GGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMV 214 (473)
T ss_dssp HHHHHSCEET-----TCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEE
T ss_pred HHHHHhhhcc-----CCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEE
Confidence 4566644331 2357899999999999999988753322 234556666666543 3444444443200
Q ss_pred -CCCCCcccHHH----HHHHHHHhc---CCceEEEEecCC
Q 036619 268 -KSASGLNEFQS----LMSRIQSSI---KGKKNFLVLDDV 299 (352)
Q Consensus 268 -~~~~~~~~~~~----~~~~l~~~l---~~kr~LlVlDdv 299 (352)
........... ..-.+.+++ ++++.||++||+
T Consensus 215 ~~~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 215 FGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECT
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 00011000111 111233333 589999999999
No 118
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.15 E-value=0.0035 Score=52.05 Aligned_cols=25 Identities=40% Similarity=0.352 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+|.|+|+.|+|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999874
No 119
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.13 E-value=0.034 Score=51.91 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+.+|.++|.+|+||||++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999877753
No 120
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.13 E-value=0.0062 Score=57.61 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+.|.|.+|+||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 7889999999999999888874
No 121
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.11 E-value=0.06 Score=50.30 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+++|.++|.+|+||||++..+...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999877754
No 122
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.10 E-value=0.0042 Score=56.75 Aligned_cols=50 Identities=28% Similarity=0.254 Sum_probs=34.9
Q ss_pred ccccccchHHHHHHHHcCc-------c--ccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 185 EVCGRVDEKSELFSKLLCE-------S--SEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3688888888877766210 0 000123456789999999999999999974
No 123
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.10 E-value=0.0039 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+|.|.|++|+||||+++.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999863
No 124
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.10 E-value=0.0039 Score=56.86 Aligned_cols=113 Identities=12% Similarity=0.181 Sum_probs=61.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
-.+++|+|+.|+|||||.+.+.... .......+ +++.++.... .......+..... ..+.......|...|...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~--~~~~~~~i-~t~ed~~e~~--~~~~~~~v~q~~~-~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL--NNTKYHHI-LTIEDPIEFV--HESKKCLVNQREV-HRDTLGFSEALRSALRED 196 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH--HHHCCCEE-EEEESSCCSC--CCCSSSEEEEEEB-TTTBSCHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc--cCCCCcEE-EEccCcHHhh--hhccccceeeeee-ccccCCHHHHHHHHhhhC
Confidence 3589999999999999999887632 21111122 2222221100 0000000000000 001123345788888888
Q ss_pred eEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHHH
Q 036619 291 KNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVAR 334 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 334 (352)
.=+|++|.+-+ .+.++.+..... .|.-||+||...+.+.
T Consensus 197 PdvillDEp~d--~e~~~~~~~~~~---~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMRD--LETIRLALTAAE---TGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCCS--HHHHHHHHHHHH---TTCEEEEEESCSSHHH
T ss_pred cCEEecCCCCC--HHHHHHHHHHHh---cCCEEEEEEccChHHH
Confidence 88999999953 244555444432 3666999998876554
No 125
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.10 E-value=0.024 Score=50.43 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....++.|+|++|+||||++..+...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 34689999999999999999888864
No 126
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.09 E-value=0.0027 Score=51.25 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+|.|+|+.|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999863
No 127
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.07 E-value=0.008 Score=54.97 Aligned_cols=97 Identities=10% Similarity=0.055 Sum_probs=52.2
Q ss_pred HHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhh-ccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC---
Q 036619 194 SELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS--- 269 (352)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~--- 269 (352)
-+.++.+..-. .-..++|+|.+|+|||||++.+.+..... ..+. ++++-+.+...... ++.+.+...
T Consensus 162 iraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~---~~~~~~~~~vV~ 232 (422)
T 3ice_A 162 ARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVT---EMQRLVKGEVVA 232 (422)
T ss_dssp HHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHH---HHHTTCSSEEEE
T ss_pred ceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHH---HHHHHhCeEEEE
Confidence 35666666543 23578999999999999999887642211 1233 33466665443221 233333211
Q ss_pred -CCCcccHH-----HHHHHHHHhc--CCceEEEEecCC
Q 036619 270 -ASGLNEFQ-----SLMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 270 -~~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdv 299 (352)
..+..... ...-.+.+++ +++..||++||+
T Consensus 233 atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 233 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 01111011 1111122333 689999999998
No 128
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.06 E-value=0.0044 Score=50.08 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...++.|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998863
No 129
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.05 E-value=0.022 Score=51.82 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=35.2
Q ss_pred HHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC--CCCcEEEEecCChHHHHHh
Q 036619 280 MSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG--LHGSKILVTTRNESVARMM 336 (352)
Q Consensus 280 ~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~IivTTR~~~va~~~ 336 (352)
.-.|...|..+.=+|++|.--+. |...-..+...+..- ..|..||++|.+-+++..+
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~ 230 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRI 230 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 34455667777888999987443 222233344444421 2377799999998777654
No 130
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.05 E-value=0.079 Score=49.40 Aligned_cols=25 Identities=40% Similarity=0.280 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...++.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999888764
No 131
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.03 E-value=0.0036 Score=56.37 Aligned_cols=43 Identities=21% Similarity=0.170 Sum_probs=35.1
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|++..+..+...+... .-+.++|++|+|||+||+.+.+.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH
Confidence 45889999888888877642 24779999999999999999873
No 132
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.03 E-value=0.0069 Score=53.47 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=27.8
Q ss_pred HHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 194 SELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
++++..++.... ......+|.|.|++|+||||+|+.+...
T Consensus 17 ~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 17 NDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344444443321 2245688999999999999999999863
No 133
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.03 E-value=0.0042 Score=51.90 Aligned_cols=25 Identities=40% Similarity=0.330 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+++|+|+.|+|||||++.+..-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 134
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.02 E-value=0.069 Score=47.64 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=34.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIE 264 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 264 (352)
.-.++.|.|.+|+||||||..+..+.... . ..++|++.. .+...+...++.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g-~~vl~~slE--~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDN-D-DVVNLHSLE--MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTT-T-CEEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc-C-CeEEEEECC--CCHHHHHHHHHH
Confidence 34688899999999999998877653222 2 567777765 344555555443
No 135
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.02 E-value=0.0042 Score=50.88 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+|.|.|++|+||||+++.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 136
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.02 E-value=0.0027 Score=55.29 Aligned_cols=51 Identities=24% Similarity=0.233 Sum_probs=34.6
Q ss_pred CccccccchHHHHHHHHcCcccc------CCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSE------QQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..++.+.+.+..-... +....+-+.|+|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46899988888877655310000 0011233679999999999999999984
No 137
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.00 E-value=0.0036 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+++|+|+.|+|||||++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999864
No 138
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.00 E-value=0.0038 Score=51.80 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+++|+|+.|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 358999999999999999999863
No 139
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.99 E-value=0.0057 Score=52.87 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=29.0
Q ss_pred HHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 193 KSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+.++..++.... ......+|.|+|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 15 LARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3444444554332 2345689999999999999999999863
No 140
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.98 E-value=0.0034 Score=50.85 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=20.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 47899999999999999996543
No 141
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.98 E-value=0.004 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3568999999999999999999864
No 142
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.97 E-value=0.005 Score=50.96 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.+..+|+|+|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999886
No 143
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.97 E-value=0.0037 Score=51.01 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+.|.|+|++|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999763
No 144
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.96 E-value=0.019 Score=52.72 Aligned_cols=112 Identities=12% Similarity=0.156 Sum_probs=56.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGK 290 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (352)
-.+++|+|+.|+|||||.+.+....... .-..+.++.-.-.+.... .+ ..+.....+. +...+...++..|...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~~~~~---~~-~~v~Q~~~g~-~~~~~~~~l~~~L~~~ 209 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYVFKH---KK-SIVNQREVGE-DTKSFADALRAALRED 209 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCSCCCC---SS-SEEEEEEBTT-TBSCSHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhhhhcc---Cc-eEEEeeecCC-CHHHHHHHHHHHhhhC
Confidence 4689999999999999999988642211 012233333111100000 00 0000000000 0112245667777667
Q ss_pred eEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHH
Q 036619 291 KNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVA 333 (352)
Q Consensus 291 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va 333 (352)
.=+|++|.+-+. +.... ++.....|.-|+.|+...++.
T Consensus 210 pd~illdE~~d~--e~~~~---~l~~~~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 210 PDVIFVGEMRDL--ETVET---ALRAAETGHLVFGTLHTNTAI 247 (372)
T ss_dssp CSEEEESCCCSH--HHHHH---HHHHHTTTCEEEECCCCCSHH
T ss_pred cCEEEECCCCCH--HHHHH---HHHHHhcCCEEEEEECcchHH
Confidence 778999998532 32322 222223466788888876544
No 145
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.94 E-value=0.0033 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|.|+.|+||||||+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 146
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.93 E-value=0.0046 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.++.|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 147
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.93 E-value=0.039 Score=51.37 Aligned_cols=24 Identities=42% Similarity=0.325 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++.++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999888764
No 148
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.91 E-value=0.0055 Score=51.06 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....+|+|+|+.|+|||||++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999998863
No 149
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.90 E-value=0.0045 Score=51.40 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+++|+|+.|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998764
No 150
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.90 E-value=0.0046 Score=50.50 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNND 235 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (352)
.++|+|+.|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 151
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.87 E-value=0.0057 Score=50.72 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....+|.|.|+.|+||||+++.+...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44678999999999999999999863
No 152
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.85 E-value=0.0054 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=23.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+.++|.|.|++|+||+|.|+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999875
No 153
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.85 E-value=0.049 Score=48.92 Aligned_cols=26 Identities=38% Similarity=0.363 Sum_probs=22.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....+++|+|+.|+|||||++.+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999988864
No 154
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.84 E-value=0.0054 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|.|++|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 155
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.82 E-value=0.0037 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999863
No 156
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.81 E-value=0.0054 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++.|+|++|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999864
No 157
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.80 E-value=0.0052 Score=50.23 Aligned_cols=23 Identities=43% Similarity=0.738 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+|.|.|++|+||||+++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 158
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.80 E-value=0.0054 Score=50.91 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999875
No 159
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.79 E-value=0.0055 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|.|++|+||||+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999863
No 160
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.78 E-value=0.0063 Score=58.05 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=34.9
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..++.+...+... .-+.|+|++|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 35889988888887777542 24679999999999999999974
No 161
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.78 E-value=0.0058 Score=52.79 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999998763
No 162
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.78 E-value=0.0053 Score=50.78 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5889999999999999999874
No 163
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.77 E-value=0.0052 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+|+|+|+.|+||||+++.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988753
No 164
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.75 E-value=0.0047 Score=50.20 Aligned_cols=24 Identities=42% Similarity=0.517 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|+|++|+||||+++.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999999864
No 165
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.75 E-value=0.0044 Score=56.08 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=32.2
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..+..+...+.... ..-+.|+|++|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458898876665544444322 122789999999999999999874
No 166
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.74 E-value=0.0042 Score=51.59 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++++|+|+.|+|||||++.+...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999998763
No 167
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.73 E-value=0.0059 Score=49.95 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998863
No 168
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.72 E-value=0.0045 Score=51.56 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|+|++|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 568899999999999999998764
No 169
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.72 E-value=0.0055 Score=49.19 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=21.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....+|.|.|+.|+||||+++.+...
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999863
No 170
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.71 E-value=0.0071 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|.|++|+||||+++.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999863
No 171
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.71 E-value=0.034 Score=50.14 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=34.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIE 264 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 264 (352)
-.++.|.|.+|+||||||..+..+... +=..++|++.. .+...+...++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHH
Confidence 468889999999999999888765333 22356666653 455555555543
No 172
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.70 E-value=0.0064 Score=50.57 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 173
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.70 E-value=0.0082 Score=51.57 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+|.|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 174
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.69 E-value=0.0056 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
..+++|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 175
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.69 E-value=0.0076 Score=49.26 Aligned_cols=25 Identities=40% Similarity=0.364 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 176
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.68 E-value=0.0067 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999863
No 177
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.67 E-value=0.0086 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|.|++|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999863
No 178
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.66 E-value=0.0071 Score=50.13 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+|.|.|++|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 179
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.64 E-value=0.098 Score=44.33 Aligned_cols=90 Identities=19% Similarity=0.293 Sum_probs=47.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhh-hccC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------------Cc-
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSDTFDQIRIAKAIIEGLGKSAS---------------GL- 273 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------------~~- 273 (352)
..+.|.|..|+||||+.....-+... .... ...+.+......-...+...+...++.... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 46889999999999877544432222 2222 223333333333333444555544432210 00
Q ss_pred ----ccHHHHHHHHHHhcCCceEEEEecCCCCC
Q 036619 274 ----NEFQSLMSRIQSSIKGKKNFLVLDDVWDG 302 (352)
Q Consensus 274 ----~~~~~~~~~l~~~l~~kr~LlVlDdvw~~ 302 (352)
...+.+...+...+.+-+ +||+|.++..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~~-~lVlDEah~~ 188 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGIS-HVIVDEIHER 188 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCC-EEEECCTTSC
T ss_pred eEEEECHHHHHHHHHhhhcCCc-EEEEECCccC
Confidence 134566666666554443 7899999763
No 180
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.63 E-value=0.0072 Score=54.02 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....+++|+|+.|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45689999999999999999998863
No 181
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.62 E-value=0.0075 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|.|++|+||||+++.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 182
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.61 E-value=0.043 Score=51.88 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....+++|+|..|+|||||++.+...
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 34679999999999999999998864
No 183
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.61 E-value=0.0056 Score=49.54 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999999864
No 184
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.60 E-value=0.0067 Score=48.98 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...++.|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999998874
No 185
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.60 E-value=0.002 Score=54.49 Aligned_cols=104 Identities=18% Similarity=0.285 Sum_probs=55.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CcccHHHHHHH
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS----------GLNEFQSLMSR 282 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------~~~~~~~~~~~ 282 (352)
.|.+.|.||+||||+|..+.... ....++ +..+.+....+... ..++..+...+. ...++..+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l-~~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~--- 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ-LRQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL--- 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH-HHTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH---
Confidence 46688999999999997777642 333443 34444444333321 122232222110 01122221
Q ss_pred HHHhcCCceEEEEecCCCCCC------ccChhHHHHhhccCCCCcEEEEecCCh
Q 036619 283 IQSSIKGKKNFLVLDDVWDGD------YNKWQPFFRCLKNGLHGSKILVTTRNE 330 (352)
Q Consensus 283 l~~~l~~kr~LlVlDdvw~~~------~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (352)
+..+.=++|+|++-..+ ..-|..+...++. |.-|+.|+..+
T Consensus 81 ----L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 81 ----LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp ----HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred ----HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 22244599999876431 1257777665554 55688888744
No 186
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.59 E-value=0.0056 Score=50.31 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|+|+.|+|||||++.+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4779999999999999998763
No 187
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.59 E-value=0.046 Score=51.52 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=61.1
Q ss_pred HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCC-HHHHHHHHHHHhCCC----
Q 036619 195 ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFD-QIRIAKAIIEGLGKS---- 269 (352)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~---- 269 (352)
+.++.|..-. +-.-++|+|..|+|||+|+..+.++. .+.+-+.++++-+.+... +..+.+++...-...
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 4566665433 23467899999999999998888752 234557888888877654 556666666532111
Q ss_pred ---CC-------Cccc-----HHHHHHHHHHhc---CCceEEEEecCC
Q 036619 270 ---AS-------GLNE-----FQSLMSRIQSSI---KGKKNFLVLDDV 299 (352)
Q Consensus 270 ---~~-------~~~~-----~~~~~~~l~~~l---~~kr~LlVlDdv 299 (352)
.. +... .....-.+.+++ +++..||++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 00 0000 112223344555 468999999998
No 188
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.59 E-value=0.0068 Score=50.60 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999988753
No 189
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.58 E-value=0.0068 Score=49.94 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|.|++|+||||+|+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 190
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.58 E-value=0.008 Score=51.63 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+++|.|+.|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999988763
No 191
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.55 E-value=0.059 Score=47.70 Aligned_cols=24 Identities=46% Similarity=0.386 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++.++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999888764
No 192
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.54 E-value=0.0071 Score=50.95 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999864
No 193
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.52 E-value=0.0052 Score=50.08 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+|.|.|++|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999863
No 194
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.52 E-value=0.0095 Score=47.55 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|.|||||.+.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999864
No 195
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.52 E-value=0.005 Score=50.03 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=17.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999763
No 196
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.51 E-value=0.012 Score=53.15 Aligned_cols=43 Identities=23% Similarity=0.195 Sum_probs=28.6
Q ss_pred cchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 190 VDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 190 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+.-.+++++.+...-. ......|.|+|++|+||||+++.+...
T Consensus 5 ~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3444555555532211 134567889999999999999988764
No 197
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.48 E-value=0.056 Score=51.62 Aligned_cols=89 Identities=15% Similarity=0.070 Sum_probs=52.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC--------------------
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS-------------------- 269 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-------------------- 269 (352)
.-.++.|.|.+|+||||||..+..+.... +=..++|++... +...+...++......
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 317 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ 317 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHH
Confidence 34678899999999999998877653222 123577776644 4455555443221110
Q ss_pred ---------------CCCcccHHHHHHHHHHhcC-CceEEEEecCCCC
Q 036619 270 ---------------ASGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWD 301 (352)
Q Consensus 270 ---------------~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~ 301 (352)
.....+.+++...++.... .+--+||+|.+..
T Consensus 318 ~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~ 365 (503)
T 1q57_A 318 WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISI 365 (503)
T ss_dssp HHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTC
T ss_pred HHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchh
Confidence 0111345666666666543 3445999999854
No 198
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.48 E-value=0.0094 Score=48.36 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+|.|.|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999874
No 199
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.47 E-value=0.0084 Score=53.63 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=28.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 251 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 251 (352)
++.+||+|.|-||+||||.+-.+.-- ....=..+.=|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 35799999999999999999777652 222222455566553
No 200
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.46 E-value=0.011 Score=48.94 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....+|+|.|+.|+||||+++.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998863
No 201
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.45 E-value=0.0092 Score=49.48 Aligned_cols=25 Identities=20% Similarity=0.575 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+++.|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3578999999999999999998864
No 202
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.44 E-value=0.0089 Score=49.87 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|.|+.|+||||+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 203
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.42 E-value=0.0065 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999863
No 204
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.41 E-value=0.0084 Score=53.37 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+++|+|+.|+|||||++.+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999988754
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.41 E-value=0.014 Score=49.15 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4688899999999999999888764
No 206
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.40 E-value=0.032 Score=61.27 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=56.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHHHHHHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSLMSRIQ 284 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (352)
..+++.|+|++|+|||+||.++.... ...=..++|+.+...++... ++.++.... .....++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45788999999999999998887642 22334678888888777655 344442211 1223345556666
Q ss_pred Hhc-CCceEEEEecCCC
Q 036619 285 SSI-KGKKNFLVLDDVW 300 (352)
Q Consensus 285 ~~l-~~kr~LlVlDdvw 300 (352)
... +.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 554 3566799999984
No 207
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.40 E-value=0.17 Score=48.06 Aligned_cols=26 Identities=38% Similarity=0.387 Sum_probs=21.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....+|+|+|.+|+||||++..+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999887753
No 208
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.39 E-value=0.096 Score=49.14 Aligned_cols=65 Identities=23% Similarity=0.196 Sum_probs=44.9
Q ss_pred HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCC-HHHHHHHHHHH
Q 036619 195 ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFD-QIRIAKAIIEG 265 (352)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~ 265 (352)
+.++.|..-. +-.-++|+|.+|+|||+|+..+.++. .+.+-+.++++-+.+... +..+.+++...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 5677776533 23568899999999999999888752 234446677777777553 45666666654
No 209
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.39 E-value=0.0068 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 467999999999999999998863
No 210
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.38 E-value=0.0092 Score=47.71 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 211
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.37 E-value=0.0091 Score=48.86 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+|.|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999874
No 212
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.37 E-value=0.034 Score=50.08 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=56.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCce
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQSSIKGKK 291 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (352)
.+++|+|+.|.|||||.+.+..-. ..-...+.+.-......... . +.++... + ........|...|..+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~---~~~~g~i~i~~~~e~~~~~~-~---~~i~~~~-g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI---PKEERIISIEDTEEIVFKHH-K---NYTQLFF-G--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS---CTTSCEEEEESSCCCCCSSC-S---SEEEEEC-B--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---cCCCcEEEECCeeccccccc-h---hEEEEEe-C--CChhHHHHHHHHhhhCC
Confidence 478999999999999999998742 12233444442221110000 0 0000000 0 11122345566677777
Q ss_pred EEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHH
Q 036619 292 NFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVA 333 (352)
Q Consensus 292 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va 333 (352)
=+|+||.+-.. +.++.+ ..+..+ +.-+|+||...+..
T Consensus 242 ~ilildE~~~~--e~~~~l-~~~~~g--~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 242 DRIILGELRSS--EAYDFY-NVLCSG--HKGTLTTLHAGSSE 278 (330)
T ss_dssp SEEEECCCCST--HHHHHH-HHHHTT--CCCEEEEEECSSHH
T ss_pred CEEEEcCCChH--HHHHHH-HHHhcC--CCEEEEEEcccHHH
Confidence 88999998553 344433 333332 22367777665443
No 213
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.34 E-value=0.067 Score=47.85 Aligned_cols=26 Identities=42% Similarity=0.528 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....+++|+|.+|+||||++..+...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999888764
No 214
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.34 E-value=0.0091 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|.|++|+||||+++.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999863
No 215
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.33 E-value=0.0091 Score=51.58 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
..+|+|+|+.|+|||||++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 216
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.33 E-value=0.019 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
....+++|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999886
No 217
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.32 E-value=0.0096 Score=49.58 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|.|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 218
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.31 E-value=0.011 Score=51.89 Aligned_cols=25 Identities=44% Similarity=0.707 Sum_probs=22.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999873
No 219
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.31 E-value=0.0055 Score=51.19 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998864
No 220
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.30 E-value=0.011 Score=49.85 Aligned_cols=48 Identities=27% Similarity=0.300 Sum_probs=32.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhh---c-cCCeEEEEEeCCCCCHHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVK---R-NFEKVIWVCVSDTFDQIR 257 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~ 257 (352)
.-.+++|+|+.|+|||||++.+....... . .-...+|+.....+....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~ 75 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 75 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH
Confidence 35799999999999999999997632111 0 134578887665544433
No 221
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.27 E-value=0.009 Score=51.49 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (352)
+.|+|++|+|||||++.++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999974
No 222
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.26 E-value=0.11 Score=48.78 Aligned_cols=88 Identities=10% Similarity=0.077 Sum_probs=53.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC---------------------
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS--------------------- 269 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~--------------------- 269 (352)
-.++.|.|.+|+||||||..+..+.... +=..++|++.. .+...+...++.....-
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a 276 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDV 276 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHH
Confidence 4688899999999999998887653322 22357777664 34455555554322110
Q ss_pred ------------CCCcccHHHHHHHHHHhcC-CceEEEEecCCCC
Q 036619 270 ------------ASGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWD 301 (352)
Q Consensus 270 ------------~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~ 301 (352)
.....+..++...+++... .+.-+||+|-+..
T Consensus 277 ~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~ 321 (444)
T 2q6t_A 277 ASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQL 321 (444)
T ss_dssp HHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhh
Confidence 0111245566666665542 3455999998854
No 223
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.25 E-value=0.01 Score=50.19 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.-.+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999999998864
No 224
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.22 E-value=0.013 Score=49.02 Aligned_cols=24 Identities=38% Similarity=0.311 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|.|+.|+||||+++.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999874
No 225
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.22 E-value=0.094 Score=46.31 Aligned_cols=24 Identities=42% Similarity=0.325 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+++|+|.+|+||||++..+...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999988864
No 226
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.21 E-value=0.01 Score=50.66 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=26.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 250 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 250 (352)
-.+++|+|+.|+|||||++.+....... .-....++...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~ 68 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEcc
Confidence 4689999999999999999888432211 12345555543
No 227
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.20 E-value=0.012 Score=52.26 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+++|+|+.|+|||||++.+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999999999999988764
No 228
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.20 E-value=0.015 Score=48.63 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...++.|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888764
No 229
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.016 Score=47.22 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.....|.|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34557889999999999999888764
No 230
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.17 E-value=0.0097 Score=50.17 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|.|++|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999874
No 231
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.17 E-value=0.012 Score=48.70 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|.|+.|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 232
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.16 E-value=0.012 Score=49.35 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 233
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.16 E-value=0.014 Score=49.01 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 234
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.14 E-value=0.012 Score=48.33 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 235
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.13 E-value=0.0099 Score=49.00 Aligned_cols=23 Identities=39% Similarity=0.392 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHhhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNND 235 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (352)
+++|+|+.|+|||||.+.+....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68899999999999999988754
No 236
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.11 E-value=0.012 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.. .+++|+|+.|+|||||.+.+..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 34 7899999999999999999875
No 237
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.10 E-value=0.059 Score=49.23 Aligned_cols=56 Identities=16% Similarity=-0.004 Sum_probs=35.8
Q ss_pred chHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhh-ccCCeEEEEEeCCC
Q 036619 191 DEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSDT 252 (352)
Q Consensus 191 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~ 252 (352)
.---+.++.|..-. .-..++|+|.+|+|||+|+..+.+..... ..+. ++++-+.+.
T Consensus 160 ~tGiraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 160 IYSTRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp CHHHHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hccchhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 33456778776533 23467899999999999999888753221 1232 345555543
No 238
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.10 E-value=0.012 Score=49.96 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=31.3
Q ss_pred HHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChHHH
Q 036619 282 RIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNESVA 333 (352)
Q Consensus 282 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~va 333 (352)
.|...|-.++=+|+||.--.. |...-..+...+..- ..|..||++|.+.+.+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 345556667779999987443 222233344444321 1266799999998766
No 239
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.10 E-value=0.021 Score=51.96 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=28.1
Q ss_pred HHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 193 KSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...++..+.... ....+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 445555554333 45789999999999999999887653
No 240
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.10 E-value=0.021 Score=54.95 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=59.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCC---------------CCCcc
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKS---------------ASGLN 274 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~---------------~~~~~ 274 (352)
.-.++.|+|..|+|||||++.++...... =..++++..... ...+...+ ..++.. .+..-
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccC
Confidence 34789999999999999999988643221 123455544332 33333322 112111 01111
Q ss_pred cHHHHH-HHHHHhcCCceEEEEecCCCCCCcc-----ChhHHHHhhcc-CCCCcEEEEecCCh
Q 036619 275 EFQSLM-SRIQSSIKGKKNFLVLDDVWDGDYN-----KWQPFFRCLKN-GLHGSKILVTTRNE 330 (352)
Q Consensus 275 ~~~~~~-~~l~~~l~~kr~LlVlDdvw~~~~~-----~~~~l~~~l~~-~~~gs~IivTTR~~ 330 (352)
+..+.+ ..+...+..+.-+||||-+..-+.. ....+...+.. ...|..||+||.+.
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 233333 3344555677789999954322222 22222222221 12366788887664
No 241
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.08 E-value=0.0075 Score=48.85 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998864
No 242
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.06 E-value=0.012 Score=50.40 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=31.9
Q ss_pred HHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC--CCCcEEEEecCChHHHH
Q 036619 282 RIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG--LHGSKILVTTRNESVAR 334 (352)
Q Consensus 282 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~IivTTR~~~va~ 334 (352)
.|...|-.++=+|+||.--.. |...-..+...+..- ..|..||++|.+.+++.
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~ 210 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR 210 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHT
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 344555566778999987443 222233444444432 22677999999988764
No 243
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.06 E-value=0.013 Score=49.09 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 244
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.00 E-value=0.042 Score=45.56 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=18.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAY 232 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~ 232 (352)
..+..|.|.+|.|||++|....
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHH
Confidence 3477899999999999996643
No 245
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.97 E-value=0.013 Score=49.23 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999874
No 246
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.94 E-value=0.019 Score=55.85 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+++.|.|.+|+||||++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 57789999999999999888764
No 247
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.94 E-value=0.011 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+++|+|+.|+|||||.+.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998864
No 248
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.93 E-value=0.0089 Score=50.76 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=16.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAY 232 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~ 232 (352)
..+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999998
No 249
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.92 E-value=0.013 Score=51.29 Aligned_cols=50 Identities=28% Similarity=0.310 Sum_probs=31.6
Q ss_pred CccccccchHHHHHHHHcCccc-------cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESS-------EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..+.++.+....-.. +-..... +.|+|++|+|||||++.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 4577877666655443321100 0001123 889999999999999999974
No 250
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.90 E-value=0.014 Score=48.69 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+|.|.|++|+||+|+|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999875
No 251
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.86 E-value=0.14 Score=49.72 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998753
No 252
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.84 E-value=0.016 Score=49.17 Aligned_cols=26 Identities=23% Similarity=0.095 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....+|+|.|+.|+|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44679999999999999999998863
No 253
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.84 E-value=0.014 Score=49.86 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|+|||||.+.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999863
No 254
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.84 E-value=0.014 Score=50.72 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 255
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.84 E-value=0.014 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999875
No 256
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.83 E-value=0.017 Score=52.54 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+++|+|+.|+|||||++.+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4689999999999999999988764
No 257
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.77 E-value=0.013 Score=50.65 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.+|.|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 258
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.77 E-value=0.015 Score=49.78 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999876
No 259
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.75 E-value=0.017 Score=47.77 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+|+|.|+.|+||||+++.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999998763
No 260
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.75 E-value=0.016 Score=49.34 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|.|++|+||||+++.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998863
No 261
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.74 E-value=0.015 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999875
No 262
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.74 E-value=0.019 Score=47.06 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.-.++|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567899999999999999988764
No 263
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.74 E-value=0.017 Score=49.84 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 264
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.72 E-value=0.016 Score=50.53 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999999875
No 265
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.71 E-value=0.016 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46899999999999999999875
No 266
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.70 E-value=0.018 Score=46.76 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++.|+|..|+|||||++.+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999988864
No 267
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.68 E-value=0.019 Score=47.98 Aligned_cols=22 Identities=36% Similarity=0.351 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 268
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.65 E-value=0.018 Score=50.18 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=32.6
Q ss_pred HHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChHHHHH
Q 036619 283 IQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNESVARM 335 (352)
Q Consensus 283 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~va~~ 335 (352)
|...|-.++-+|+||.--.. |...-..+...+..- ..|..||++|.+.+.+..
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~ 229 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDY 229 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGT
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHh
Confidence 34444556668999987543 323344455555542 347779999998776543
No 269
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.64 E-value=0.014 Score=49.05 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=62.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhh-c--cC---------CeEEEEEeCC----CCCHHH----------------HH
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVK-R--NF---------EKVIWVCVSD----TFDQIR----------------IA 259 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~-~--~F---------~~~~wv~vs~----~~~~~~----------------~~ 259 (352)
.+++|+|+.|+|||||.+.++.-.... . .| ..+.++.-.. ..++.+ -.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 115 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI 115 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence 578999999999999999987631110 0 00 1133332111 112211 12
Q ss_pred HHHHHHhCCCCCC-----cccHHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC-CCCcEEEEecCChHH
Q 036619 260 KAIIEGLGKSASG-----LNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG-LHGSKILVTTRNESV 332 (352)
Q Consensus 260 ~~i~~~l~~~~~~-----~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v 332 (352)
..+++.++..... .+.-+.-.-.|...|-.++=+|+||.--.. |...-..+...+... ..|..||++|.+.+.
T Consensus 116 ~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 195 (214)
T 1sgw_A 116 MDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195 (214)
T ss_dssp HHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT
T ss_pred HHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 3344444432211 111222223344555667778999987543 334444555555432 125568888877554
Q ss_pred H
Q 036619 333 A 333 (352)
Q Consensus 333 a 333 (352)
+
T Consensus 196 ~ 196 (214)
T 1sgw_A 196 Y 196 (214)
T ss_dssp T
T ss_pred H
Confidence 3
No 270
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.63 E-value=0.017 Score=49.70 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|+|||||.+.+..-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998753
No 271
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.62 E-value=0.02 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+|.|.|+.|+||||||..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998864
No 272
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.61 E-value=0.02 Score=48.67 Aligned_cols=24 Identities=33% Similarity=0.217 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|.|+.|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999874
No 273
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.61 E-value=0.018 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999976
No 274
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.59 E-value=0.02 Score=48.37 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.|.|++|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 275
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.58 E-value=0.024 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|+|+.|+|||||+..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 276
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.56 E-value=0.033 Score=52.04 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=35.0
Q ss_pred CccccccchHHHHHHHHcCc--------cccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCE--------SSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.++.++.|...+... ........+-+.++|++|+||||+|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45788888777776655321 0000113456889999999999999999874
No 277
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.56 E-value=0.018 Score=50.30 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=32.6
Q ss_pred HHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCC--CCcEEEEecCChHHHH
Q 036619 283 IQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGL--HGSKILVTTRNESVAR 334 (352)
Q Consensus 283 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~--~gs~IivTTR~~~va~ 334 (352)
|...|-.++-+|+||.--.. |...-..+...+.... .|..||++|.+.+.+.
T Consensus 167 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE 221 (271)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 44455566778899987543 2233444555555432 3777999999877664
No 278
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.52 E-value=0.041 Score=46.75 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=61.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC--------------------
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSA-------------------- 270 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-------------------- 270 (352)
-.++.|.|.+|+|||||+..+..... . .=..++|++.... ...+...+ ..++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~-~-~~~~v~~~~~e~~--~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~ 97 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL-K-MGEPGIYVALEEH--PVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFTAGIG 97 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH-H-TTCCEEEEESSSC--HHHHHHHH-HTTTCCCHHHHHHTSEEEEECSTTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEccCC--HHHHHHHH-HHcCCCHHHHhhCCcEEEEecchhhcc
Confidence 46889999999999999977765321 2 2235777775543 34443332 2222110
Q ss_pred ----------CCcccHHHHHHHHHHhcC-CceEEEEecCCCCCC---ccChhHHHHhhcc--CCCCcEEEEecCChH
Q 036619 271 ----------SGLNEFQSLMSRIQSSIK-GKKNFLVLDDVWDGD---YNKWQPFFRCLKN--GLHGSKILVTTRNES 331 (352)
Q Consensus 271 ----------~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~~---~~~~~~l~~~l~~--~~~gs~IivTTR~~~ 331 (352)
....+..++...+.+.+. .+.-++|+|.+.... ......+...+.. ...|..||+|+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 98 KSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV 174 (247)
T ss_dssp C--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred cccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 011244555666666553 234489999985431 1122222222211 123667888876543
No 279
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.52 E-value=0.019 Score=49.86 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|+|||||.+.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999998753
No 280
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.50 E-value=0.019 Score=49.44 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.+++|+|+.|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999875
No 281
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.50 E-value=0.022 Score=50.30 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999886
No 282
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.49 E-value=0.025 Score=49.11 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=55.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEE-EeCCCCCHHHHHHHHHH--HhCCCCCCcccHHHHHHHHHHh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV-CVSDTFDQIRIAKAIIE--GLGKSASGLNEFQSLMSRIQSS 286 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv-~vs~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~ 286 (352)
.-.+++|+|+.|+|||||.+.+..-.. ..+...+++ ...-.+-.... ..++. .++. .. ..+...+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHH
Confidence 357899999999999999999886422 111223322 21100000000 00000 0000 01 1224455555
Q ss_pred cCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCChHHHH
Q 036619 287 IKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRNESVAR 334 (352)
Q Consensus 287 l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 334 (352)
|..++=+|++|..- +.+....+.... ..|.-|++||.+.+++.
T Consensus 95 L~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 95 LREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred HhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 55566688889885 223332322222 23667888888765443
No 283
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.49 E-value=0.027 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999988764
No 284
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.48 E-value=0.027 Score=48.55 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....++.+.|.||+|||||+..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45788899999999999999888753
No 285
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.48 E-value=0.09 Score=57.80 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=58.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHHHHHHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSLMSRIQ 284 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (352)
.-.++.|.|++|+||||||.++..... ..-..++|++....++... ++.++.... ...+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 357899999999999999988876532 2224688998888776542 455554322 2345666666666
Q ss_pred Hhc-CCceEEEEecCCCCC
Q 036619 285 SSI-KGKKNFLVLDDVWDG 302 (352)
Q Consensus 285 ~~l-~~kr~LlVlDdvw~~ 302 (352)
... +.+.-+||+|-+...
T Consensus 455 ~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCcEEEECCHHHh
Confidence 554 345569999998543
No 286
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.46 E-value=0.02 Score=49.90 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999875
No 287
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.45 E-value=0.081 Score=57.36 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=57.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHHHHHHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSLMSRIQ 284 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (352)
.-+++.|.|.+|+||||||.++..... ..=..++|++....++... ++.++.... ...+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 357889999999999999988776432 2234789998888777542 455554321 1234566666666
Q ss_pred Hhc-CCceEEEEecCCCCC
Q 036619 285 SSI-KGKKNFLVLDDVWDG 302 (352)
Q Consensus 285 ~~l-~~kr~LlVlDdvw~~ 302 (352)
... +.+.-+||+|-+...
T Consensus 455 ~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHhcCCCEEEECCHHHh
Confidence 554 345569999998653
No 288
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.45 E-value=0.02 Score=49.47 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 289
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.45 E-value=0.22 Score=51.21 Aligned_cols=122 Identities=17% Similarity=0.210 Sum_probs=66.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCC---eEEEEEeCCCC-------CHH-----------HHHHHHHHHhCCC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE---KVIWVCVSDTF-------DQI-----------RIAKAIIEGLGKS 269 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~~-------~~~-----------~~~~~i~~~l~~~ 269 (352)
-.+++|+|+.|+|||||.+.+..- .+. .|+ ..-.+.+.+.. ++. .-...+++.++..
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 358899999999999999999841 121 111 00112333221 111 2233445555442
Q ss_pred C-------CCcccHHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccCCCCcEEEEecCChHHHHHh
Q 036619 270 A-------SGLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNGLHGSKILVTTRNESVARMM 336 (352)
Q Consensus 270 ~-------~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 336 (352)
. ...+..+.-.-.|...|-.+.=+|+||.--+. |...-..+...+.. .|..||++|.+...+..+
T Consensus 539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNV 611 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHH
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHh
Confidence 0 01122222233344555566778999987543 22334456666655 466788899887666543
No 290
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.44 E-value=0.02 Score=50.26 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|+|||||.+.+..-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999998763
No 291
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.43 E-value=0.019 Score=46.63 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999988863
No 292
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.43 E-value=0.12 Score=44.01 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=53.7
Q ss_pred EEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCC---C--------CCC-----cccHH
Q 036619 214 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGK---S--------ASG-----LNEFQ 277 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~---~--------~~~-----~~~~~ 277 (352)
+.|+|+.|.|||.+|..+.... . ..++++. .. ..+..++.+.+.. . ... ....+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-PT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-SS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-CC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 6689999999999998776532 1 2344443 22 1233333333221 1 000 11234
Q ss_pred HHHHHHHHhcCCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEec
Q 036619 278 SLMSRIQSSIKGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTT 327 (352)
Q Consensus 278 ~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT 327 (352)
.+..... .+.++--+||+|.+.......+..+...++ ...++++|.
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 4443333 333445699999998865566777666554 233455443
No 293
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.41 E-value=0.024 Score=50.64 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|+|+.|+||||||+.+...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998864
No 294
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.41 E-value=0.027 Score=44.19 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.-|.++|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999888764
No 295
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.40 E-value=0.021 Score=46.96 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.-.++|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999988864
No 296
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.39 E-value=0.022 Score=53.02 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999998864
No 297
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.36 E-value=0.027 Score=50.07 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|+|+.|+||||||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368899999999999999998763
No 298
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.34 E-value=0.12 Score=42.74 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=43.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHHhc
Q 036619 213 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASG-----LNEFQSLMSRIQSSI 287 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~l 287 (352)
.|+|=|.-|+||||.++.+++. .+.....+.+..-.........++.++..-...+.. ..+..+....+...|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999999999874 333322333333333223334444444321111000 011233445566666
Q ss_pred CCceEEEEecCC
Q 036619 288 KGKKNFLVLDDV 299 (352)
Q Consensus 288 ~~kr~LlVlDdv 299 (352)
...+ .+|.|-.
T Consensus 80 ~~g~-~Vi~DRy 90 (197)
T 3hjn_A 80 SEGY-AVLLDRY 90 (197)
T ss_dssp TTTC-EEEEESC
T ss_pred HCCC-eEEeccc
Confidence 5554 4566754
No 299
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.34 E-value=0.025 Score=49.37 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 300
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.33 E-value=0.03 Score=49.65 Aligned_cols=25 Identities=32% Similarity=0.178 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+|.|+|+.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4578999999999999999998864
No 301
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.30 E-value=0.023 Score=50.42 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 346899999999999999998875
No 302
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.29 E-value=0.32 Score=45.56 Aligned_cols=40 Identities=15% Similarity=0.048 Sum_probs=28.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 251 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 251 (352)
.-.++.|.|.+|+||||||..+..+.... =..++|++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm 235 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM 235 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC
Confidence 34688899999999999998887753332 23566665543
No 303
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.29 E-value=0.098 Score=49.34 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=55.1
Q ss_pred HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHH-HHHHhhhhhhccCC-eEEEEEeCCCCC-HHHHHHHHHHHhCCC--
Q 036619 195 ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLA-QLAYNNDEVKRNFE-KVIWVCVSDTFD-QIRIAKAIIEGLGKS-- 269 (352)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~-- 269 (352)
+.++.|..-. +-..++|+|.+|+|||+|| ..+.+.. +-+ .++++-+.+..+ +..+.+.+...-...
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 4566665433 2345789999999999996 6777742 345 346676776543 445555555422111
Q ss_pred -----CCCcccHHH-----HHHHHHHhc--CCceEEEEecCC
Q 036619 270 -----ASGLNEFQS-----LMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 270 -----~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 299 (352)
..+...... ..-.+.+++ +++..||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 011111111 112233333 689999999998
No 304
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.26 E-value=0.075 Score=50.20 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=55.1
Q ss_pred HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHH-HHHHhhhhhhccCC-eEEEEEeCCCCC-HHHHHHHHHHHhCCC--
Q 036619 195 ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLA-QLAYNNDEVKRNFE-KVIWVCVSDTFD-QIRIAKAIIEGLGKS-- 269 (352)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~-- 269 (352)
+.++.|..-. .-..++|+|.+|+|||+|| ..+.+.. .-+ .++++-+.+..+ +..+.+.+...=...
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 4567675433 2245789999999999996 6777742 245 356666776543 445555555421110
Q ss_pred -----CCCcccHH-----HHHHHHHHhc--CCceEEEEecCC
Q 036619 270 -----ASGLNEFQ-----SLMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 270 -----~~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdv 299 (352)
..+..... ...-.+.+++ +++..||++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11111111 1112233333 689999999998
No 305
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.26 E-value=0.052 Score=46.05 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNND 235 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (352)
....|.|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999753
No 306
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.25 E-value=0.19 Score=42.01 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|-|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999999874
No 307
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.22 E-value=0.014 Score=51.62 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=18.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+..+|+|.|..|+||||+|+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998863
No 308
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.22 E-value=0.034 Score=52.00 Aligned_cols=25 Identities=44% Similarity=0.441 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+.+|.|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999887764
No 309
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.20 E-value=0.034 Score=44.98 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|+|+|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999998864
No 310
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.17 E-value=0.028 Score=44.09 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4779999999999999888764
No 311
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.16 E-value=0.028 Score=49.17 Aligned_cols=118 Identities=19% Similarity=0.185 Sum_probs=61.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhc---------cCCeEEEEEeCCCCCHHHHHHH---H------------HHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKR---------NFEKVIWVCVSDTFDQIRIAKA---I------------IEGL 266 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~F~~~~wv~vs~~~~~~~~~~~---i------------~~~l 266 (352)
-.++.|+|++|+|||||+..+..... .. .-..+++++..... ..+... + ++.+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~~~~~l 106 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQAVADGL 106 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHHHHHHE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhhccCce
Confidence 46899999999999999988876322 11 01346677766543 222111 1 2222
Q ss_pred CCCC-----CCcccHHHHHHHHHHhcCCceEEEEecCCCC--C-CccCh---hHHHHhhccC--CCCcEEEEecCChHHH
Q 036619 267 GKSA-----SGLNEFQSLMSRIQSSIKGKKNFLVLDDVWD--G-DYNKW---QPFFRCLKNG--LHGSKILVTTRNESVA 333 (352)
Q Consensus 267 ~~~~-----~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~--~-~~~~~---~~l~~~l~~~--~~gs~IivTTR~~~va 333 (352)
.... ....+..+ ...+...+.+ .-+||||.+-. . +.... ..+...|... ..|+.||++|.....+
T Consensus 107 ~l~~~~~~~~~~ls~g~-~~~i~~l~~~-~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 107 LIQPLIGSLPNIMAPEW-FDGLKRAAEG-RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp EECCCTTSCCCTTSHHH-HHHHHHHHTT-CSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred EEeecCCCCcccCCHHH-HHHHHHhcCC-CCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 2111 11111222 3445555554 56899999865 2 21112 3444444321 2377799988776543
No 312
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.15 E-value=0.45 Score=47.89 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=17.0
Q ss_pred EEEEEEecCCCcHHHHHHHHH
Q 036619 212 QVISLVGLGGIGKTTLAQLAY 232 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~ 232 (352)
.++.|+|+.|.||||++..+.
T Consensus 110 ~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478899999999999665543
No 313
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.12 E-value=0.029 Score=47.72 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999998876
No 314
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.10 E-value=0.037 Score=43.65 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 455779999999999999988764
No 315
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.06 E-value=0.044 Score=44.30 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3567789999999999999988864
No 316
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.05 E-value=0.027 Score=48.92 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999985
No 317
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.98 E-value=0.038 Score=47.14 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999874
No 318
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.96 E-value=0.033 Score=49.83 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999854
No 319
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.96 E-value=0.031 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.158 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
...+++|+|+.|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999986
No 320
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.93 E-value=0.048 Score=50.88 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=55.4
Q ss_pred HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCC----eEEEEEeCCCC-CHHHHHHHHHHHhCCC
Q 036619 195 ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFE----KVIWVCVSDTF-DQIRIAKAIIEGLGKS 269 (352)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~~~~~i~~~l~~~ 269 (352)
+.++.|..-.. -..++|+|..|+|||+|+..+.+.... +-+ .++++-+.+.. .+..+.+++...=...
T Consensus 140 raID~l~pigr-----GQr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~ 212 (465)
T 3vr4_D 140 SAIDHLNTLVR-----GQKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAID 212 (465)
T ss_dssp HHHHTTSCCBT-----TCBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGG
T ss_pred eEEeccccccc-----CCEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCcc
Confidence 45666654331 234678999999999999988875332 223 56666666543 3455556554431010
Q ss_pred -------CCCcccH-----HHHHHHHHHhc---CCceEEEEecCC
Q 036619 270 -------ASGLNEF-----QSLMSRIQSSI---KGKKNFLVLDDV 299 (352)
Q Consensus 270 -------~~~~~~~-----~~~~~~l~~~l---~~kr~LlVlDdv 299 (352)
..+.... ....-.+.+++ +++..||++||+
T Consensus 213 rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 213 RSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp GEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 0111111 11122344444 379999999998
No 321
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.92 E-value=0.043 Score=43.61 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456789999999999999888765
No 322
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.91 E-value=0.037 Score=54.17 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=33.8
Q ss_pred CccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 45788887777766666432 36889999999999999999873
No 323
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.90 E-value=0.026 Score=46.91 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+.|+|++|+||||+|..+.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999888874
No 324
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.90 E-value=0.052 Score=50.67 Aligned_cols=100 Identities=9% Similarity=0.079 Sum_probs=55.3
Q ss_pred HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhh--------ccCC-eEEEEEeCCCC-CHHHHHHHHHH
Q 036619 195 ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVK--------RNFE-KVIWVCVSDTF-DQIRIAKAIIE 264 (352)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~~~~~i~~ 264 (352)
+.++.|..-.. -.-++|+|..|+|||+|+..+.+..... ++=+ .++++-+.+.. .+..+.+++.+
T Consensus 136 raID~l~pigr-----GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTLVR-----GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCCBT-----TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeeccccccc-----CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 45666654331 2346789999999999999888764331 1111 56666666543 34455555444
Q ss_pred HhCCC-------CCCcccH-----HHHHHHHHHhc---CCceEEEEecCC
Q 036619 265 GLGKS-------ASGLNEF-----QSLMSRIQSSI---KGKKNFLVLDDV 299 (352)
Q Consensus 265 ~l~~~-------~~~~~~~-----~~~~~~l~~~l---~~kr~LlVlDdv 299 (352)
.-... ..+.... ....-.+.+++ +++..||++||+
T Consensus 211 ~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 211 TGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp TSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 21000 0111111 11222344444 378999999998
No 325
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.87 E-value=0.032 Score=49.21 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|+|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999999999863
No 326
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.84 E-value=0.063 Score=48.43 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
....+++|+|++|+|||||.+.+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999875
No 327
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.83 E-value=0.13 Score=43.38 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=26.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEE
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVI 245 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~ 245 (352)
.....|.|.|+.|+||||+++.+.+.-.....+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 3467899999999999999999987533213444443
No 328
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.83 E-value=0.089 Score=46.54 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=28.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 251 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 251 (352)
...++|+|+|-||+||||+|..+...- ...=..++-|....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCC
Confidence 457899999999999999998777632 22222455565544
No 329
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.81 E-value=0.14 Score=42.86 Aligned_cols=108 Identities=12% Similarity=0.080 Sum_probs=51.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHHhcC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS--GLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 288 (352)
-.+..++|..|.||||.+-....+... ....+.+ +..... ...-...+...++.... ...+.. .+.+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli-~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIV-FKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEE-EECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEE-EEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 468889999999999999666554332 2333333 332211 11111233343332211 111111 2223333
Q ss_pred CceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC
Q 036619 289 GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN 329 (352)
Q Consensus 289 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (352)
++--+|++|.+..-+.+..+.+ ..+.+ .|-.||+|-++
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLD 137 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECS
T ss_pred cCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEecc
Confidence 3333999999977543444333 33322 26789999984
No 330
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.79 E-value=0.023 Score=50.52 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999875
No 331
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.78 E-value=0.036 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999986
No 332
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.77 E-value=0.11 Score=49.00 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=56.2
Q ss_pred HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHH-HHHHhhhhh----hccCC-eEEEEEeCCCCC-HHHHHHHHHHHhC
Q 036619 195 ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLA-QLAYNNDEV----KRNFE-KVIWVCVSDTFD-QIRIAKAIIEGLG 267 (352)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~ 267 (352)
+.++.|..-. .-..++|+|.+|+|||+|| ..+.+.... .++-+ .++++-+.+..+ +..+.+.+...-.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 4567776533 2245789999999999995 677775322 02334 466777776543 4455555554211
Q ss_pred CC-------CCCcccHHH-----HHHHHHHhc--CCceEEEEecCC
Q 036619 268 KS-------ASGLNEFQS-----LMSRIQSSI--KGKKNFLVLDDV 299 (352)
Q Consensus 268 ~~-------~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 299 (352)
.. ..+...... ..-.+.+++ +++..||++||+
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 10 111111111 112233333 689999999998
No 333
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.76 E-value=0.044 Score=44.61 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3566789999999999999988765
No 334
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.76 E-value=0.042 Score=43.91 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999888764
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.72 E-value=0.057 Score=43.12 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=21.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....-|.|+|..|+|||||...+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567889999999999999888765
No 336
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.72 E-value=0.036 Score=44.99 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
--|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45779999999999999888764
No 337
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.71 E-value=0.037 Score=51.37 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999999999987
No 338
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.67 E-value=0.038 Score=43.70 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34679999999999999888764
No 339
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.65 E-value=0.043 Score=44.38 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.+..|+|+.|.|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3788999999999999988864
No 340
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.63 E-value=0.039 Score=43.45 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34789999999999999888764
No 341
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.62 E-value=0.14 Score=43.55 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=27.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEE
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 248 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 248 (352)
...|.|.|+.|+||||+++.+.+... ..++.......
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 46899999999999999999987532 33455344333
No 342
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.62 E-value=0.038 Score=43.69 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999888764
No 343
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.61 E-value=0.075 Score=48.00 Aligned_cols=25 Identities=20% Similarity=0.229 Sum_probs=21.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
....+++|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3468899999999999999988864
No 344
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.59 E-value=0.058 Score=42.36 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..-|.++|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999888764
No 345
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.58 E-value=0.051 Score=43.56 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998864
No 346
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.58 E-value=0.04 Score=43.25 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=19.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999888754
No 347
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.57 E-value=0.04 Score=43.45 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4679999999999999988653
No 348
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.57 E-value=0.04 Score=43.53 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999888765
No 349
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.55 E-value=0.04 Score=43.45 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999888764
No 350
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.55 E-value=0.049 Score=44.17 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|+|..|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999988875
No 351
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.54 E-value=0.091 Score=46.11 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=28.0
Q ss_pred HHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 194 SELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+++.+.|.............|+|+|.+|+|||||...+...
T Consensus 9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 44455554322212234668899999999999999998864
No 352
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.54 E-value=0.2 Score=47.81 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=40.9
Q ss_pred HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCH-HHHHHHH
Q 036619 195 ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQ-IRIAKAI 262 (352)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i 262 (352)
+.++.|..-. +-..++|+|..|+|||+|+..+.+. .+-+.++++-+.+..+- ..+++++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 5677776533 2356889999999999999988763 23457888888876653 3444443
No 353
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.52 E-value=0.054 Score=43.31 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...-|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567889999999999999888764
No 354
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.52 E-value=0.071 Score=42.50 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999888764
No 355
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.50 E-value=0.043 Score=43.16 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (352)
|.++|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999888754
No 356
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.49 E-value=0.041 Score=49.94 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999875
No 357
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.48 E-value=0.045 Score=45.54 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....|.|+|.+|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999888764
No 358
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.48 E-value=0.042 Score=44.68 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=19.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 456789999999999999777653
No 359
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.48 E-value=0.05 Score=49.35 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+++|+|.+|+|||||...+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988863
No 360
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.45 E-value=0.059 Score=43.54 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456779999999999999888764
No 361
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.45 E-value=0.042 Score=44.59 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=19.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456779999999999999777654
No 362
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.42 E-value=0.044 Score=44.27 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4679999999999999888765
No 363
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.40 E-value=0.044 Score=43.72 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999888754
No 364
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.38 E-value=0.05 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.266 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+.+.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999988764
No 365
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.35 E-value=0.059 Score=42.55 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=18.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999988864
No 366
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.33 E-value=0.044 Score=49.99 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...++|+|..|+|||||++.+..-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999988763
No 367
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.32 E-value=0.045 Score=50.10 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 35899999999999999999986
No 368
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.31 E-value=0.046 Score=44.44 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456779999999999999887764
No 369
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.30 E-value=0.046 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 36899999999999999999986
No 370
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.29 E-value=0.056 Score=49.77 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+|.|.|+.|+||||||..+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58899999999999999988864
No 371
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.28 E-value=0.048 Score=43.00 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=20.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 455789999999999999888754
No 372
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.28 E-value=0.19 Score=41.98 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=31.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHH
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIE 264 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 264 (352)
..|.+-|+.|+||||+++.+.+.-. ...+..+....-.........+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5788999999999999999987532 234433333332222223444455544
No 373
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.27 E-value=0.081 Score=44.90 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=31.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAI 262 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 262 (352)
-.++.|.|.+|+|||+||.++..+. ....-..+++++... +...+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 4688899999999999997765432 222234566665543 445555443
No 374
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.27 E-value=0.032 Score=48.30 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+...|.|.|..|+||||+++.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999988864
No 375
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.27 E-value=0.094 Score=45.42 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=25.8
Q ss_pred HHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 196 LFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 196 l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+..||.... ++...+.++|++|.|||.||..+.+.
T Consensus 93 l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 555554321 23456889999999999999999873
No 376
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.26 E-value=0.047 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 36899999999999999999876
No 377
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.25 E-value=0.05 Score=44.36 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..|.|+|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999888763
No 378
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.23 E-value=0.066 Score=50.18 Aligned_cols=100 Identities=9% Similarity=0.052 Sum_probs=56.2
Q ss_pred HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhcc--CCeEEEEEeCCCC-CHHHHHHHHHHHhCCC--
Q 036619 195 ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSDTF-DQIRIAKAIIEGLGKS-- 269 (352)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-- 269 (352)
+.++.|..-.. -.-++|+|.+|+|||+|+..+.++....+. =+.++++-+.+.. .+..+.+++...-...
T Consensus 141 r~ID~l~pigr-----GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLVR-----GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCBT-----TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeecccc-----CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 45666654331 234678899999999999999886443221 1345666665543 3556666665431111
Q ss_pred -----CCCcccH-----HHHHHHHHHhc---CCceEEEEecCC
Q 036619 270 -----ASGLNEF-----QSLMSRIQSSI---KGKKNFLVLDDV 299 (352)
Q Consensus 270 -----~~~~~~~-----~~~~~~l~~~l---~~kr~LlVlDdv 299 (352)
..+.... -...-.+.+++ +++..||++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 0011111 11122334444 479999999997
No 379
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.23 E-value=0.15 Score=47.44 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
...++..|.|.+|.||||+.+...+
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 5689999999999999999988875
No 380
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.23 E-value=0.12 Score=52.98 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=19.6
Q ss_pred eEEEEEEecCCCcHHHHHHHH
Q 036619 211 LQVISLVGLGGIGKTTLAQLA 231 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v 231 (352)
-.+++|+|+.|.|||||.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 578999999999999999988
No 381
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.22 E-value=0.065 Score=44.24 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999888754
No 382
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.21 E-value=0.051 Score=43.77 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456789999999999999888764
No 383
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.19 E-value=0.052 Score=43.25 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
--|.|+|..|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999888754
No 384
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.19 E-value=0.049 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 35899999999999999999985
No 385
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.18 E-value=0.046 Score=48.48 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
+.+ +|+|..|+|||||.+.++.
T Consensus 19 ~~I-~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTL-MVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEE-EEEEETTSSHHHHHHHHHC
T ss_pred EEE-EEECCCCCCHHHHHHHHhC
Confidence 444 8999999999999999775
No 386
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.17 E-value=0.091 Score=49.63 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=47.7
Q ss_pred EEEEEEecCCCcHHHHH-HHHHhhhhhhccCC-eEEEEEeCCCCC-HHHHHHHHHHHhCC--------CCCC--ccc---
Q 036619 212 QVISLVGLGGIGKTTLA-QLAYNNDEVKRNFE-KVIWVCVSDTFD-QIRIAKAIIEGLGK--------SASG--LNE--- 275 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~--------~~~~--~~~--- 275 (352)
..++|+|.+|+|||+|| ..+.+.. .-+ .++++-+.+... +..+.+.+...-.. ..+. ...
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45689999999999996 6777753 234 356676776543 34444444332100 0010 000
Q ss_pred ---HHHHHHHHHHhcCCceEEEEecCC
Q 036619 276 ---FQSLMSRIQSSIKGKKNFLVLDDV 299 (352)
Q Consensus 276 ---~~~~~~~l~~~l~~kr~LlVlDdv 299 (352)
.-.+.+.+++ +++..||++||+
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 1223344444 689999999997
No 387
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.17 E-value=0.05 Score=43.88 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 345779999999999999988765
No 388
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.14 E-value=0.071 Score=42.02 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999888754
No 389
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.14 E-value=0.032 Score=46.18 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...++|+|..|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999888754
No 390
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.13 E-value=0.24 Score=46.74 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=55.1
Q ss_pred HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHH-HHHHhhhhhhccCC-eEEEEEeCCCCC-HHHHHHHHHHHhCCC--
Q 036619 195 ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLA-QLAYNNDEVKRNFE-KVIWVCVSDTFD-QIRIAKAIIEGLGKS-- 269 (352)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~-- 269 (352)
+.++.|..-.. -..++|+|..|+|||+|+ ..+.+. .+-+ .++++-+.+..+ +..+.+.+.+.-...
T Consensus 151 kaID~l~Pigr-----GQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~t 221 (513)
T 3oaa_A 151 KAVDSMIPIGR-----GQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANT 221 (513)
T ss_dssp HHHHHHSCCBT-----TCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTE
T ss_pred eeecccccccc-----CCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccce
Confidence 45666655331 245789999999999996 667763 2233 457777777654 455555554431111
Q ss_pred -----CCCcccH---------HHHHHHHHHhcCCceEEEEecCC
Q 036619 270 -----ASGLNEF---------QSLMSRIQSSIKGKKNFLVLDDV 299 (352)
Q Consensus 270 -----~~~~~~~---------~~~~~~l~~~l~~kr~LlVlDdv 299 (352)
..+.... -.+.+.+++ +++..||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 222 IVVVATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 0111111 122333333 689999999998
No 391
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.13 E-value=0.05 Score=49.71 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 36899999999999999999875
No 392
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.11 E-value=0.059 Score=44.28 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..|.|+|.+|+|||||.+.+.+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999988763
No 393
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.08 E-value=0.06 Score=43.17 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 567789999999999999888754
No 394
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.08 E-value=0.14 Score=44.21 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=26.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 251 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 251 (352)
++|+|.|-||+||||+|..+...- ...-..++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l--a~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL--HAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH--HHCCCcEEEEcCCC
Confidence 578889999999999998877632 22222455565543
No 395
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.07 E-value=0.04 Score=44.08 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=20.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.++|.+|+|||||...+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345779999999999999888764
No 396
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.06 E-value=0.071 Score=42.14 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999888754
No 397
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.03 E-value=0.24 Score=47.44 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=39.5
Q ss_pred HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCC-CHHHHHHH
Q 036619 195 ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-DQIRIAKA 261 (352)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~ 261 (352)
+.++.|..-. +-..++|.|..|+|||+|+..+.+. .+-+.++++-+.+.. .+.+++++
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 5677776543 2356889999999999999998874 234577777777653 33344433
No 398
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.01 E-value=0.055 Score=45.88 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....++|.|++|+||||+|+.+...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999874
No 399
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.00 E-value=0.072 Score=42.41 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...-|.|+|.+|+|||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3566889999999999999888765
No 400
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.00 E-value=0.063 Score=47.72 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
+....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 56899999999999999999888764
No 401
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.99 E-value=0.066 Score=46.96 Aligned_cols=39 Identities=28% Similarity=0.299 Sum_probs=26.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 251 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 251 (352)
.++|+|.|-||+||||+|..+...-. ..=..++-|....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La--~~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALA--EMGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHH--HCCCeEEEEecCC
Confidence 46888899999999999988776422 2212455555543
No 402
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.99 E-value=0.055 Score=43.74 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..--|.|+|.+|+|||||...+.+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999888764
No 403
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.98 E-value=0.041 Score=49.81 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=64.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhc---cCC------------eEEEEEeCCCC------CHH-------------
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKR---NFE------------KVIWVCVSDTF------DQI------------- 256 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F~------------~~~wv~vs~~~------~~~------------- 256 (352)
-.+++|+|+.|+|||||.+.+..-..... .|+ .+.+| .+.+ ++.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~enl~~~~~~~~~~ 103 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV--YQNYSLFPHMNVKKNLEFGMRMKKIK 103 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE--CTTCCCCTTSCHHHHHHHHHHHHCCC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE--ecCcccCCCCCHHHHHHHHHHHcCCC
Confidence 35899999999999999999986311100 000 12222 2221 221
Q ss_pred --HHHHHHHHHhCCCCC------CcccHHHHHHHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC--CCCcEEEE
Q 036619 257 --RIAKAIIEGLGKSAS------GLNEFQSLMSRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG--LHGSKILV 325 (352)
Q Consensus 257 --~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~Iiv 325 (352)
.-..++++.++.... ..+.-+.-.-.|...|-.++=+|+||.--+. |...-..+...+..- ..|..||+
T Consensus 104 ~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~ 183 (348)
T 3d31_A 104 DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183 (348)
T ss_dssp CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 112334555543211 1122232233455666677778999987443 222223344444321 23667888
Q ss_pred ecCChHHHHHh
Q 036619 326 TTRNESVARMM 336 (352)
Q Consensus 326 TTR~~~va~~~ 336 (352)
+|.+.+.+..+
T Consensus 184 vTHd~~~~~~~ 194 (348)
T 3d31_A 184 ITHDQTEARIM 194 (348)
T ss_dssp EESCHHHHHHH
T ss_pred EeCCHHHHHHh
Confidence 99887766544
No 404
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.96 E-value=0.056 Score=43.31 Aligned_cols=23 Identities=35% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
--|.|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45679999999999999888764
No 405
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.96 E-value=0.057 Score=44.19 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=19.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 445679999999999999877663
No 406
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.95 E-value=0.056 Score=43.42 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..-|.|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456789999999999999888764
No 407
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.94 E-value=0.061 Score=43.82 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.....|.|+|.+|+|||||...+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 44677889999999999999988765
No 408
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.94 E-value=0.056 Score=43.24 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999888764
No 409
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.93 E-value=0.057 Score=44.19 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=19.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.--|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999988764
No 410
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.93 E-value=0.06 Score=42.97 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..--|.|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4566789999999999999988765
No 411
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.93 E-value=0.06 Score=48.78 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|..|+|||||.+.+.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999985
No 412
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.92 E-value=0.061 Score=43.74 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 345779999999999999888865
No 413
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.91 E-value=0.081 Score=43.33 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...-|.|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567889999999999999888754
No 414
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.90 E-value=0.059 Score=44.63 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456779999999999999888764
No 415
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.90 E-value=0.061 Score=47.64 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....++|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999888764
No 416
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.89 E-value=0.057 Score=44.11 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345779999999999999888764
No 417
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.89 E-value=0.06 Score=43.85 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|..|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999888764
No 418
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.88 E-value=0.088 Score=42.23 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..--|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999888864
No 419
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.88 E-value=0.066 Score=51.35 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+|.++|++|.||||+|+.+...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999764
No 420
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.87 E-value=0.086 Score=43.64 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=21.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
....+|+|+|++|+||+|+|..+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHH
Confidence 3467999999999999999988865
No 421
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.84 E-value=0.23 Score=53.92 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=59.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CcccHHHHHHHH
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS-----GLNEFQSLMSRI 283 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 283 (352)
+.-++|-|+|+.|+||||||-++... ....=..++|+.+.+..+..- ++.++.... .....++....+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 34589999999999999999888863 344456799999888777653 666665422 223335555556
Q ss_pred HHhcC-CceEEEEecCCC
Q 036619 284 QSSIK-GKKNFLVLDDVW 300 (352)
Q Consensus 284 ~~~l~-~kr~LlVlDdvw 300 (352)
...++ +.--+||+|-|-
T Consensus 1502 ~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHcCCCCEEEEccHH
Confidence 66664 455699999883
No 422
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.83 E-value=0.078 Score=43.06 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|..|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999888764
No 423
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.81 E-value=0.063 Score=44.09 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...-|.|+|.+|+|||||...+.+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3556789999999999999888865
No 424
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.79 E-value=0.075 Score=44.71 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....|.|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567789999999999999988765
No 425
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.78 E-value=0.039 Score=45.41 Aligned_cols=108 Identities=11% Similarity=0.082 Sum_probs=53.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHHhcC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSAS--GLNEFQSLMSRIQSSIK 288 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 288 (352)
-.+..++|..|.||||.+..+.++.. ...+.+.++-..-.. ..-...+...++.... ...+.. .+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~~d~---r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPEIDN---RYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC----------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccCc---cchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 46889999999999999976666533 233334333222111 1001112222221100 011111 2333444
Q ss_pred CceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC
Q 036619 289 GKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN 329 (352)
Q Consensus 289 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (352)
++-=+|++|.+..-+.+..+.+....+ .|..||+|.++
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~ 117 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLD 117 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEecc
Confidence 333499999986643333443433322 26789999874
No 426
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.77 E-value=0.062 Score=42.93 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999888764
No 427
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.76 E-value=0.081 Score=42.43 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=20.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999888754
No 428
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.75 E-value=0.064 Score=49.36 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 46899999999999999999875
No 429
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.73 E-value=0.064 Score=43.98 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=19.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHH
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAY 232 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~ 232 (352)
..-.|.|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999999998885
No 430
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.72 E-value=0.038 Score=50.16 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=33.4
Q ss_pred HHHHHhcCCceEEEEecCCCCC-CccChhHHHHhhccC--CCCcEEEEecCChHHHHHh
Q 036619 281 SRIQSSIKGKKNFLVLDDVWDG-DYNKWQPFFRCLKNG--LHGSKILVTTRNESVARMM 336 (352)
Q Consensus 281 ~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~IivTTR~~~va~~~ 336 (352)
-.|...|-.+.=+|+||.--+. |...-..+...+..- ..|..||++|.+.+.+..+
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ 207 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAI 207 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3455566667778999986443 323333444444321 1266788899987766544
No 431
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.72 E-value=0.055 Score=45.23 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.+|.|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 432
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.70 E-value=0.054 Score=49.35 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+++|+|+.|+|||||++.+..-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 57899999999999999999874
No 433
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.69 E-value=0.082 Score=43.38 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....|.|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567889999999999999888764
No 434
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.68 E-value=0.033 Score=54.35 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-+.++|++|+|||+||+.+.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 4779999999999999999863
No 435
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.63 E-value=0.066 Score=43.92 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999888765
No 436
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.60 E-value=0.066 Score=43.38 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999888765
No 437
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.60 E-value=0.085 Score=44.79 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567889999999999999988865
No 438
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.60 E-value=0.068 Score=43.91 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=20.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999888754
No 439
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.60 E-value=0.066 Score=43.59 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456779999999999999988865
No 440
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.58 E-value=0.066 Score=44.38 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456789999999999999888764
No 441
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.58 E-value=0.067 Score=43.47 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..--|.|+|..|+|||||...+.+.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3556889999999999999888865
No 442
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.56 E-value=0.068 Score=43.34 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 455789999999999999888764
No 443
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.56 E-value=0.084 Score=43.53 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=20.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345679999999999999888764
No 444
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.54 E-value=0.071 Score=42.89 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.-.|.|+|..|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356779999999999999888764
No 445
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.52 E-value=0.13 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|+|||||.+.+...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999988763
No 446
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.51 E-value=0.068 Score=43.43 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 455779999999999999888764
No 447
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.50 E-value=0.068 Score=43.77 Aligned_cols=24 Identities=38% Similarity=0.349 Sum_probs=19.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 455779999999999999888765
No 448
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.45 E-value=0.073 Score=43.78 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999888764
No 449
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.44 E-value=0.15 Score=44.29 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....|.++|.+|+|||||...+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999888865
No 450
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.43 E-value=0.066 Score=42.97 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=20.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|+|.+|+|||||...+...
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456779999999999999888753
No 451
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.41 E-value=0.074 Score=44.26 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=20.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999888764
No 452
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.41 E-value=0.097 Score=49.88 Aligned_cols=25 Identities=12% Similarity=-0.053 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...+|.+.|+.|+||||+|+.+...
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 453
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.39 E-value=0.14 Score=44.19 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....|+|+|..|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999888765
No 454
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.39 E-value=0.071 Score=43.68 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..-|.|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 466789999999999999888754
No 455
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.38 E-value=0.091 Score=45.62 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999988764
No 456
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.38 E-value=0.073 Score=43.13 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356789999999999999888764
No 457
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.36 E-value=0.27 Score=41.48 Aligned_cols=104 Identities=11% Similarity=0.056 Sum_probs=52.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHHhc
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFDQIRIAKAIIEGLGKSAS--GLNEFQSLMSRIQSSI 287 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 287 (352)
-.+..++|.-|.||||.+-....+.. .....+.++-..-+ .+. . .+...++.... ...+..++... .
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~D~Ryg-~----~i~sr~G~~~~a~~i~~~~di~~~----~ 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAKDTRYS-S----SFCTHDRNTMEALPACLLRDVAQE----A 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETTCCCC----------------CEEEEESSGGGGHHH----H
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecCCccch-H----HHHhhcCCeeEEEecCCHHHHHHH----h
Confidence 46888999999999988844444322 22333444332222 222 3 33444332211 01111122222 2
Q ss_pred CCceEEEEecCCCCCCccChhHHHHhhccCCCCcEEEEecCC
Q 036619 288 KGKKNFLVLDDVWDGDYNKWQPFFRCLKNGLHGSKILVTTRN 329 (352)
Q Consensus 288 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (352)
++--+|++|.+.--. ....+...+.+ .|-.||+|-++
T Consensus 89 -~~~dvViIDEaQF~~--~v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 89 -LGVAVIGIDEGQFFP--DIVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp -TTCSEEEESSGGGCT--THHHHHHHHHH--TTCEEEEECCS
T ss_pred -ccCCEEEEEchhhhh--hHHHHHHHHHh--CCCEEEEEecc
Confidence 222399999997653 25555565554 47789999988
No 458
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.36 E-value=0.1 Score=42.35 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345779999999999999888865
No 459
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.36 E-value=0.11 Score=42.29 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456789999999999999888763
No 460
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.33 E-value=0.18 Score=42.61 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=18.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNND 235 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (352)
...|.|-|+.|+||||+++.+.+.-
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999998753
No 461
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.31 E-value=0.23 Score=49.91 Aligned_cols=51 Identities=25% Similarity=0.207 Sum_probs=34.1
Q ss_pred CccccccchHHHHHHHHcCccc-------cCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 184 GEVCGRVDEKSELFSKLLCESS-------EQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 184 ~~~~gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+.|.++.+++|.+.+.-+-. .+-...+-+.++|++|.|||.||+.+.+.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 4566777777776655432110 01123455779999999999999999984
No 462
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.30 E-value=0.11 Score=41.84 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
...|.|+|.+|+|||||...+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999888854
No 463
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.28 E-value=0.68 Score=49.55 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-..++|||+.|.|||||++.+..-
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CcEEEEEecCCCcHHHHHHHhccc
Confidence 468999999999999999999864
No 464
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.28 E-value=0.076 Score=44.37 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=19.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999988763
No 465
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.27 E-value=0.08 Score=43.70 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..-|.|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999888764
No 466
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.25 E-value=0.082 Score=42.98 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999888765
No 467
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.24 E-value=0.1 Score=42.18 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..-|.|+|..|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999888754
No 468
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.23 E-value=0.066 Score=43.62 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=20.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|..|+|||||...+.+.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 445779999999999999988765
No 469
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.22 E-value=0.092 Score=42.30 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNND 235 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (352)
...|.|+|.+|+|||||...+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999988653
No 470
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.21 E-value=0.083 Score=43.45 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..--|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3566889999999999999888754
No 471
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.20 E-value=0.068 Score=49.66 Aligned_cols=21 Identities=43% Similarity=0.648 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (352)
++|+|..|+|||||.+.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999998763
No 472
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.19 E-value=0.079 Score=44.46 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=18.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 036619 213 VISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-|.|+|.+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3568999999999999877654
No 473
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.18 E-value=0.088 Score=49.78 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.++|++|+||||+++.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999998864
No 474
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.17 E-value=0.081 Score=48.00 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+++|+|+.|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999999864
No 475
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.17 E-value=0.068 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|+|||||++.+..-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 468999999999999999998874
No 476
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.16 E-value=0.084 Score=43.65 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=20.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999888754
No 477
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.11 E-value=0.1 Score=42.54 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=20.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 355789999999999999988753
No 478
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.10 E-value=0.59 Score=42.85 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=31.6
Q ss_pred ccccccchHHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 185 EVCGRVDEKSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 185 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.++|....+.++.+.+..-.. ....| .|.|..|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~v-li~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECPV-LITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSCE-EEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCCe-EEecCCCcCHHHHHHHHHHh
Confidence 356666666666665543221 23444 79999999999999999864
No 479
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.10 E-value=0.068 Score=51.56 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.-.++.|+|+.|+|||||++.+...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3478999999999999999999874
No 480
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.09 E-value=0.087 Score=43.25 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..-|.|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999888764
No 481
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.08 E-value=0.098 Score=43.34 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..+|.|.|+.|+||||+++.+...
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 482
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.05 E-value=0.066 Score=43.42 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNND 235 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (352)
.-.|.|+|..|+|||||...+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457799999999999999888654
No 483
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.99 E-value=0.17 Score=44.69 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 209 NGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.....|+|+|..|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45778999999999999999988764
No 484
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.97 E-value=0.086 Score=43.49 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
..-|.|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999888754
No 485
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.96 E-value=0.09 Score=46.60 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=24.7
Q ss_pred HHHHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHH
Q 036619 193 KSELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAY 232 (352)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 232 (352)
+++|.+.+. -.+++|+|+.|+|||||.+.+.
T Consensus 156 i~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE---------GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH
Confidence 556666553 2478999999999999999988
No 486
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.93 E-value=0.11 Score=40.67 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (352)
.+..|+|+.|.|||||...++-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999988763
No 487
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.87 E-value=0.19 Score=49.07 Aligned_cols=42 Identities=17% Similarity=0.024 Sum_probs=26.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhh-ccCCeEEEEEeCCCC
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSDTF 253 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~ 253 (352)
+++.|.|.+|.||||++..+...-... ..-...+.+.....-
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~ 207 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGK 207 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChh
Confidence 578899999999999997776532111 111345666655543
No 488
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.86 E-value=0.12 Score=44.52 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 210 GLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999888754
No 489
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.84 E-value=0.22 Score=40.79 Aligned_cols=41 Identities=27% Similarity=0.205 Sum_probs=27.0
Q ss_pred EEEEEE-ecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCC
Q 036619 212 QVISLV-GLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFD 254 (352)
Q Consensus 212 ~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 254 (352)
++|+|+ +-||+||||+|..+...- ...-..++-|......+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l--a~~g~~vlliD~D~~~~ 43 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL--SRSGYNIAVVDTDPQMS 43 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCTTCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEECCCCCC
Confidence 578888 669999999998877642 22223456666654443
No 490
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=91.84 E-value=0.18 Score=41.52 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=16.7
Q ss_pred EEEEecCCCcHHHHHHHHHh
Q 036619 214 ISLVGLGGIGKTTLAQLAYN 233 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~ 233 (352)
+.|+++.|.|||.++.....
T Consensus 51 ~li~~~tGsGKT~~~~~~~~ 70 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAK 70 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 66899999999999866654
No 491
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.82 E-value=0.092 Score=43.72 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=20.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 345679999999999999888764
No 492
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.81 E-value=0.19 Score=41.67 Aligned_cols=31 Identities=26% Similarity=0.550 Sum_probs=23.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHhhhhhhccCCeE
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKV 244 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~ 244 (352)
+-|+|-|.-|+||||+++.+.+. ....++.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~--L~~~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR--LVKDYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH--HTTTSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHH--HHCCCCEE
Confidence 46888999999999999999874 33445443
No 493
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.79 E-value=0.053 Score=43.58 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=10.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 556889999999999999887654
No 494
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.79 E-value=0.17 Score=47.40 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=32.4
Q ss_pred ccccchHHHHHHHHcCcc-c--c--CCCCeEEEEEEecCCCcHHHHHHHHHhh
Q 036619 187 CGRVDEKSELFSKLLCES-S--E--QQNGLQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 187 ~gr~~~~~~l~~~L~~~~-~--~--~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.|.++-++.+.+.+.... . . .......++|+|.+|+|||||.+.+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 355566666666664221 0 0 0234567899999999999999998765
No 495
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.77 E-value=0.24 Score=45.25 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=28.4
Q ss_pred CCCeEEEEEEe-cCCCcHHHHHHHHHhhhhhhccCCeEEEEEeC
Q 036619 208 QNGLQVISLVG-LGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 250 (352)
Q Consensus 208 ~~~~~vi~I~G-~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 250 (352)
....++|+|+| -||+||||+|..+...- ...-..++-|...
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~L--a~~g~rVlliD~D 181 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAH--ANMGKKVFYLNIE 181 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHH--HHHTCCEEEEECC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHH--HhCCCCEEEEECC
Confidence 35679999986 89999999998777532 2222346666644
No 496
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.77 E-value=0.52 Score=53.63 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=50.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-hcCC
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFDQIRIAKAIIEGLGKSASGLNEFQSLMSRIQS-SIKG 289 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~ 289 (352)
.+-+.+||.||+||++|++.+..- .+ + ..+=+.++..++..+.-.+ +...++. -.++
T Consensus 1609 ~G~~LLvGvgGsGkqSltrLaa~i---~~-~-~~fqi~~~~~Y~~~~f~eD-----------------Lk~l~~~aG~~~ 1666 (2695)
T 4akg_A 1609 QGHMMLIGASRTGKTILTRFVAWL---NG-L-KIVQPKIHRHSNLSDFDMI-----------------LKKAISDCSLKE 1666 (2695)
T ss_dssp SEEEEEECTTTSCHHHHHHHHHHH---TT-C-EEECCCCCTTCCHHHHHHH-----------------HHHHHHHHHHSC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHH---hC-C-eeEEEEeeCCCCHHHHHHH-----------------HHHHHHHcCCCC
Confidence 356779999999999999988752 11 1 1233556777766554322 2222222 2478
Q ss_pred ceEEEEecCCCCCCccChhHHHHhhcc
Q 036619 290 KKNFLVLDDVWDGDYNKWQPFFRCLKN 316 (352)
Q Consensus 290 kr~LlVlDdvw~~~~~~~~~l~~~l~~ 316 (352)
++..++|+|-.-.+..-.+.+...|..
T Consensus 1667 ~~~vFL~tD~qi~~e~FLE~IN~lL~s 1693 (2695)
T 4akg_A 1667 SRTCLIIDESNILETAFLERMNTLLAN 1693 (2695)
T ss_dssp CCEEEEEETTTCCSHHHHHHHHHHHHS
T ss_pred CceEEEEeccccccHHHHHHHHHHHcc
Confidence 888888888755443344555554443
No 497
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=91.75 E-value=0.24 Score=47.27 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=35.6
Q ss_pred HHHHHHcCccccCCCCeEEEEEEecCCCcHHHHHHHHHhhhhhhccCCeEEEEEeCCCC
Q 036619 195 ELFSKLLCESSEQQNGLQVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF 253 (352)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 253 (352)
+.++.|..-. +-..++|.|..|+|||+|+..+.+. .+-+.++++-+.+..
T Consensus 210 rvID~l~Pig-----rGqr~~Ifg~~g~GKT~l~~~ia~~----~~~~v~V~~~iGER~ 259 (578)
T 3gqb_A 210 RILDVLFPVA-----MGGTAAIPGPFGSGKSVTQQSLAKW----SNADVVVYVGSGERG 259 (578)
T ss_dssp HHHHTTSCEE-----TTCEEEECCCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECH
T ss_pred hhhhhccccc-----CCCEEeeeCCCCccHHHHHHHHHhc----cCCCEEEEEEecccH
Confidence 4566665433 2356889999999999999998874 233567777777653
No 498
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.75 E-value=0.099 Score=48.91 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHhh
Q 036619 211 LQVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
-.+++|+|+.|+|||||.+.+...
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999874
No 499
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.58 E-value=0.088 Score=48.92 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.0
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 036619 214 ISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (352)
|+|+|..|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 489999999999999999864
No 500
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.58 E-value=0.091 Score=50.56 Aligned_cols=23 Identities=39% Similarity=0.748 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHhh
Q 036619 212 QVISLVGLGGIGKTTLAQLAYNN 234 (352)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (352)
.+++|+|+.|+|||||++.++.-
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
Done!