Query 036621
Match_columns 376
No_of_seqs 143 out of 1547
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:52:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 2.2E-33 4.8E-38 246.6 26.9 215 105-330 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 1.2E-15 2.7E-20 126.3 16.9 138 211-350 1-164 (164)
3 PLN03215 ascorbic acid mannose 99.6 1.7E-12 3.7E-17 118.4 24.5 318 4-352 2-373 (373)
4 PF08268 FBA_3: F-box associat 99.5 1.6E-13 3.6E-18 108.9 13.6 105 211-316 1-118 (129)
5 PHA02713 hypothetical protein; 99.4 7.6E-12 1.7E-16 123.2 18.2 211 105-338 299-543 (557)
6 KOG4441 Proteins containing BT 99.4 3.6E-11 7.8E-16 118.2 19.1 212 103-337 326-555 (571)
7 PHA02713 hypothetical protein; 99.4 7.4E-11 1.6E-15 116.3 20.3 196 120-337 273-498 (557)
8 KOG4441 Proteins containing BT 99.3 6.1E-11 1.3E-15 116.6 19.0 208 107-336 282-507 (571)
9 PHA02790 Kelch-like protein; P 99.3 3.7E-10 8E-15 109.7 21.7 194 108-334 270-476 (480)
10 PHA03098 kelch-like protein; P 99.3 4.6E-10 1E-14 111.0 20.2 196 119-337 311-520 (534)
11 PLN02153 epithiospecifier prot 99.2 8.4E-09 1.8E-13 96.1 23.1 204 119-337 50-293 (341)
12 TIGR03548 mutarot_permut cycli 99.1 1.9E-08 4.1E-13 93.0 21.4 150 183-336 88-287 (323)
13 PLN02193 nitrile-specifier pro 99.1 1.6E-08 3.5E-13 98.0 21.6 204 119-337 193-419 (470)
14 TIGR03547 muta_rot_YjhT mutatr 99.1 8.5E-08 1.8E-12 89.6 23.5 215 107-337 15-307 (346)
15 PHA02790 Kelch-like protein; P 99.0 1.3E-08 2.9E-13 98.9 17.5 144 183-337 287-432 (480)
16 PHA03098 kelch-like protein; P 99.0 2E-08 4.3E-13 99.4 18.6 194 120-336 265-472 (534)
17 PF12937 F-box-like: F-box-lik 98.9 5.2E-10 1.1E-14 71.7 2.3 43 6-48 1-43 (47)
18 PRK14131 N-acetylneuraminic ac 98.9 4.9E-07 1.1E-11 85.3 21.4 216 106-337 35-329 (376)
19 PLN02153 epithiospecifier prot 98.8 4E-07 8.7E-12 84.8 19.4 151 183-337 50-234 (341)
20 PRK14131 N-acetylneuraminic ac 98.8 2.7E-06 5.8E-11 80.4 23.5 148 183-333 189-373 (376)
21 PLN02193 nitrile-specifier pro 98.8 1.2E-06 2.6E-11 85.1 21.6 150 183-337 193-360 (470)
22 PF00646 F-box: F-box domain; 98.7 8.2E-09 1.8E-13 66.5 2.7 45 6-50 3-47 (48)
23 smart00256 FBOX A Receptor for 98.7 4.3E-09 9.2E-14 65.3 1.0 39 9-47 1-39 (41)
24 TIGR03547 muta_rot_YjhT mutatr 98.7 7.2E-06 1.6E-10 76.6 22.8 133 183-318 168-329 (346)
25 TIGR03548 mutarot_permut cycli 98.6 2E-06 4.4E-11 79.5 16.7 139 194-337 52-203 (323)
26 KOG4693 Uncharacterized conser 98.2 8.3E-05 1.8E-09 64.0 15.3 219 107-338 32-286 (392)
27 KOG1230 Protein containing rep 98.0 0.00042 9.1E-09 63.3 15.1 210 118-338 97-350 (521)
28 KOG4693 Uncharacterized conser 97.9 0.00028 6.1E-09 60.8 12.7 133 183-318 157-310 (392)
29 KOG2120 SCF ubiquitin ligase, 97.4 6.4E-05 1.4E-09 66.1 1.0 40 6-45 98-137 (419)
30 KOG0379 Kelch repeat-containin 97.2 0.022 4.8E-07 55.6 16.6 151 184-338 89-259 (482)
31 KOG0379 Kelch repeat-containin 97.0 0.041 8.9E-07 53.7 16.5 161 119-296 139-312 (482)
32 KOG1230 Protein containing rep 96.7 0.11 2.4E-06 48.1 15.5 146 183-329 98-276 (521)
33 PF13964 Kelch_6: Kelch motif 96.6 0.006 1.3E-07 39.1 5.1 42 209-250 5-48 (50)
34 KOG2997 F-box protein FBX9 [Ge 96.3 0.0014 3E-08 58.1 1.1 44 6-49 107-155 (366)
35 KOG0281 Beta-TrCP (transducin 96.2 0.0022 4.8E-08 57.3 1.5 43 7-49 76-122 (499)
36 PF01344 Kelch_1: Kelch motif; 95.9 0.023 5E-07 35.7 4.8 41 209-249 5-47 (47)
37 PF02191 OLF: Olfactomedin-lik 95.4 0.8 1.7E-05 40.5 14.3 128 200-338 64-213 (250)
38 smart00284 OLF Olfactomedin-li 95.1 0.94 2E-05 39.9 13.6 128 200-338 69-218 (255)
39 PF08450 SGL: SMP-30/Gluconola 95.1 2.2 4.7E-05 37.5 20.2 196 109-338 11-223 (246)
40 PF07646 Kelch_2: Kelch motif; 94.6 0.1 2.3E-06 33.1 4.8 39 209-247 5-46 (49)
41 smart00612 Kelch Kelch domain. 93.6 0.18 3.8E-06 31.2 4.5 33 183-216 15-47 (47)
42 KOG2055 WD40 repeat protein [G 92.3 9.5 0.00021 36.1 15.1 143 183-335 235-381 (514)
43 PF07893 DUF1668: Protein of u 91.4 7.8 0.00017 36.1 14.2 149 108-273 75-252 (342)
44 COG4257 Vgb Streptogramin lyas 91.2 7.3 0.00016 34.6 12.5 124 103-254 193-320 (353)
45 PF13964 Kelch_6: Kelch motif 91.0 0.45 9.7E-06 30.2 3.9 33 107-139 9-48 (50)
46 PF13418 Kelch_4: Galactose ox 90.6 0.36 7.7E-06 30.5 3.2 41 209-249 5-48 (49)
47 TIGR01640 F_box_assoc_1 F-box 90.4 9.2 0.0002 33.1 13.0 116 213-337 3-136 (230)
48 smart00612 Kelch Kelch domain. 89.9 1.1 2.4E-05 27.5 5.1 36 218-253 2-38 (47)
49 KOG0274 Cdc4 and related F-box 89.1 25 0.00055 34.9 20.7 43 6-48 108-150 (537)
50 PF07762 DUF1618: Protein of u 88.8 3.6 7.7E-05 32.3 8.4 69 231-300 6-100 (131)
51 KOG4341 F-box protein containi 88.8 0.16 3.4E-06 47.3 0.6 37 7-43 73-109 (483)
52 KOG4152 Host cell transcriptio 88.2 10 0.00022 36.5 11.9 201 119-337 57-311 (830)
53 PF05096 Glu_cyclase_2: Glutam 87.9 19 0.00041 32.0 15.1 142 174-335 61-210 (264)
54 PF06433 Me-amine-dh_H: Methyl 87.9 16 0.00035 33.7 12.8 113 215-334 195-326 (342)
55 PF13415 Kelch_3: Galactose ox 87.3 1.3 2.8E-05 28.0 4.0 39 215-253 1-42 (49)
56 PF07250 Glyoxal_oxid_N: Glyox 87.2 13 0.00029 32.6 11.5 166 183-355 46-225 (243)
57 KOG0316 Conserved WD40 repeat- 85.3 24 0.00052 30.7 13.8 182 108-334 27-219 (307)
58 KOG3545 Olfactomedin and relat 84.4 21 0.00045 31.2 11.0 135 193-338 56-212 (249)
59 PF10282 Lactonase: Lactonase, 83.1 39 0.00085 31.4 22.7 147 183-337 166-333 (345)
60 PF07646 Kelch_2: Kelch motif; 83.1 2.4 5.1E-05 26.7 3.8 20 183-202 30-49 (49)
61 KOG0310 Conserved WD40 repeat- 82.2 49 0.0011 31.7 14.3 180 125-338 8-194 (487)
62 COG3055 Uncharacterized protei 82.1 42 0.0009 31.1 12.4 133 183-318 196-357 (381)
63 PF02897 Peptidase_S9_N: Proly 81.3 51 0.0011 31.4 20.3 145 183-336 252-412 (414)
64 COG3055 Uncharacterized protei 81.1 16 0.00036 33.6 9.5 130 200-337 32-213 (381)
65 PF13418 Kelch_4: Galactose ox 81.0 2.5 5.4E-05 26.5 3.3 20 183-202 29-48 (49)
66 COG2706 3-carboxymuconate cycl 80.8 46 0.001 30.6 15.1 117 215-338 155-286 (346)
67 PLN02772 guanylate kinase 80.7 10 0.00023 35.7 8.5 75 209-286 28-107 (398)
68 PF01344 Kelch_1: Kelch motif; 80.5 11 0.00023 23.1 7.3 39 257-295 4-46 (47)
69 COG3490 Uncharacterized protei 79.3 17 0.00036 32.6 8.7 153 211-368 120-301 (366)
70 COG4946 Uncharacterized protei 78.5 41 0.00089 32.3 11.5 56 194-252 217-310 (668)
71 PRK11138 outer membrane biogen 78.2 39 0.00084 32.0 12.0 105 209-333 250-358 (394)
72 PF13415 Kelch_3: Galactose ox 77.1 6.2 0.00013 24.7 4.3 21 183-203 19-39 (49)
73 COG4946 Uncharacterized protei 77.0 24 0.00052 33.8 9.5 106 240-355 215-331 (668)
74 PRK11028 6-phosphogluconolacto 76.3 52 0.0011 30.1 12.0 94 230-329 11-111 (330)
75 PLN00181 protein SPA1-RELATED; 74.1 1.2E+02 0.0026 31.9 22.4 185 111-330 547-740 (793)
76 KOG2437 Muskelin [Signal trans 74.1 9.9 0.00021 36.6 6.3 144 121-272 231-393 (723)
77 KOG2106 Uncharacterized conser 71.9 1E+02 0.0022 30.0 20.5 59 183-253 267-330 (626)
78 COG4257 Vgb Streptogramin lyas 71.8 75 0.0016 28.5 17.9 216 107-338 70-315 (353)
79 PF13360 PQQ_2: PQQ-like domai 70.3 68 0.0015 27.4 22.1 187 108-334 35-236 (238)
80 TIGR03300 assembly_YfgL outer 69.2 1E+02 0.0022 28.9 13.0 104 210-332 60-167 (377)
81 smart00564 PQQ beta-propeller 68.8 18 0.00039 20.1 4.6 25 309-333 5-29 (33)
82 KOG0279 G protein beta subunit 68.6 36 0.00078 30.3 8.1 93 230-331 171-265 (315)
83 PF07893 DUF1668: Protein of u 67.8 1.1E+02 0.0023 28.6 12.8 104 231-337 86-216 (342)
84 PF05096 Glu_cyclase_2: Glutam 67.6 91 0.002 27.8 14.7 106 214-331 54-160 (264)
85 KOG0283 WD40 repeat-containing 67.6 1.4E+02 0.003 30.7 12.9 51 107-167 378-428 (712)
86 PF12458 DUF3686: ATPase invol 67.1 53 0.0012 31.2 9.4 135 109-284 238-383 (448)
87 PF13360 PQQ_2: PQQ-like domai 66.9 81 0.0018 26.9 14.8 134 184-332 4-144 (238)
88 KOG2437 Muskelin [Signal trans 66.2 7.2 0.00016 37.5 3.7 141 192-335 238-419 (723)
89 KOG1332 Vesicle coat complex C 65.8 95 0.0021 27.3 12.0 81 276-363 184-282 (299)
90 KOG0299 U3 snoRNP-associated p 65.6 1.3E+02 0.0028 28.8 17.6 199 101-315 205-441 (479)
91 PF12768 Rax2: Cortical protei 65.4 98 0.0021 27.9 10.7 104 183-294 16-130 (281)
92 PF10282 Lactonase: Lactonase, 64.6 1.2E+02 0.0026 28.1 16.9 115 215-338 154-287 (345)
93 cd01206 Homer Homer type EVH1 62.3 20 0.00044 26.9 4.7 39 119-168 11-50 (111)
94 PF13013 F-box-like_2: F-box-l 61.9 4.3 9.3E-05 30.7 1.2 30 5-34 21-50 (109)
95 KOG0639 Transducin-like enhanc 61.8 40 0.00087 32.6 7.6 102 229-332 438-543 (705)
96 PF01011 PQQ: PQQ enzyme repea 59.9 22 0.00047 20.9 3.8 23 312-334 2-24 (38)
97 PRK11028 6-phosphogluconolacto 59.8 1.4E+02 0.003 27.2 21.5 116 215-337 185-315 (330)
98 PRK11138 outer membrane biogen 57.6 1.7E+02 0.0037 27.6 21.2 183 108-331 119-315 (394)
99 COG1520 FOG: WD40-like repeat 55.6 1.8E+02 0.0039 27.2 12.7 131 184-333 36-176 (370)
100 KOG2502 Tub family proteins [G 55.3 8.5 0.00018 35.2 2.1 38 5-42 44-89 (355)
101 KOG0294 WD40 repeat-containing 53.6 1.8E+02 0.0039 26.6 13.9 114 209-335 46-164 (362)
102 PF13570 PQQ_3: PQQ-like domai 52.8 27 0.00059 20.6 3.5 21 309-329 20-40 (40)
103 KOG0647 mRNA export protein (c 51.8 1.3E+02 0.0029 27.2 8.8 72 264-338 39-112 (347)
104 TIGR03866 PQQ_ABC_repeats PQQ- 51.0 1.7E+02 0.0037 25.6 20.5 179 117-332 9-191 (300)
105 PF03088 Str_synth: Strictosid 49.3 35 0.00075 24.8 4.1 19 319-337 36-54 (89)
106 KOG0301 Phospholipase A2-activ 47.9 3.2E+02 0.0069 27.8 12.2 90 229-329 198-289 (745)
107 PF13854 Kelch_5: Kelch motif 46.7 54 0.0012 19.6 4.2 32 209-240 8-41 (42)
108 KOG0291 WD40-repeat-containing 46.5 3.5E+02 0.0077 28.0 19.7 109 210-330 439-552 (893)
109 KOG2096 WD40 repeat protein [G 46.5 2.4E+02 0.0051 25.9 10.5 110 214-338 96-227 (420)
110 KOG2048 WD40 repeat protein [G 46.1 3.3E+02 0.0072 27.6 12.9 104 264-369 440-551 (691)
111 TIGR03300 assembly_YfgL outer 45.1 2.6E+02 0.0057 26.0 21.1 132 184-331 156-300 (377)
112 TIGR03866 PQQ_ABC_repeats PQQ- 44.5 2.2E+02 0.0047 24.9 20.6 181 116-334 50-243 (300)
113 KOG0649 WD40 repeat protein [G 43.4 2.3E+02 0.0051 25.0 14.8 104 215-333 126-240 (325)
114 KOG2055 WD40 repeat protein [G 41.9 85 0.0018 30.1 6.3 68 267-337 227-297 (514)
115 KOG3926 F-box proteins [Amino 41.8 22 0.00048 31.4 2.4 44 3-46 199-243 (332)
116 KOG0294 WD40 repeat-containing 40.9 2.9E+02 0.0063 25.3 14.7 118 153-286 36-158 (362)
117 PF08450 SGL: SMP-30/Gluconola 40.6 2.4E+02 0.0052 24.4 17.8 109 211-336 5-130 (246)
118 KOG4378 Nuclear protein COP1 [ 39.6 1.3E+02 0.0028 29.3 7.2 53 276-333 186-244 (673)
119 cd01207 Ena-Vasp Enabled-VASP- 39.2 82 0.0018 23.9 4.9 42 119-168 9-50 (111)
120 KOG1963 WD40 repeat protein [G 38.8 2.3E+02 0.0049 29.5 9.2 92 232-329 433-539 (792)
121 KOG0292 Vesicle coat complex C 37.3 2.3E+02 0.005 29.9 8.9 70 261-331 212-283 (1202)
122 PF02239 Cytochrom_D1: Cytochr 36.4 3.7E+02 0.008 25.3 12.7 103 217-332 6-112 (369)
123 KOG0295 WD40 repeat-containing 35.5 3.1E+02 0.0067 25.6 8.7 66 266-335 305-371 (406)
124 TIGR03074 PQQ_membr_DH membran 33.9 5.8E+02 0.013 26.8 12.9 31 209-245 188-220 (764)
125 TIGR03075 PQQ_enz_alc_DH PQQ-d 33.8 4.9E+02 0.011 25.9 11.9 110 209-333 63-194 (527)
126 PF07433 DUF1513: Protein of u 33.8 3.7E+02 0.0081 24.6 14.4 198 153-366 9-236 (305)
127 KOG0289 mRNA splicing factor [ 32.4 4.6E+02 0.01 25.2 12.0 120 183-317 369-494 (506)
128 KOG1310 WD40 repeat protein [G 31.9 3.3E+02 0.0071 27.1 8.6 109 108-240 60-179 (758)
129 PF14339 DUF4394: Domain of un 31.3 1.5E+02 0.0032 26.0 5.8 55 108-168 37-93 (236)
130 KOG0265 U5 snRNP-specific prot 31.2 4.1E+02 0.0089 24.2 8.7 61 264-332 58-124 (338)
131 PF03178 CPSF_A: CPSF A subuni 30.7 4.1E+02 0.0089 24.1 16.3 96 231-338 62-169 (321)
132 KOG0319 WD40-repeat-containing 29.5 6.3E+02 0.014 26.1 10.4 102 215-333 30-140 (775)
133 PTZ00421 coronin; Provisional 28.5 5.8E+02 0.013 25.1 23.4 143 183-334 148-296 (493)
134 PF15525 DUF4652: Domain of un 28.3 3.6E+02 0.0079 22.7 7.4 19 319-337 139-157 (200)
135 KOG4547 WD40 repeat-containing 28.0 6.1E+02 0.013 25.2 10.2 94 230-332 79-176 (541)
136 KOG0293 WD40 repeat-containing 26.5 2.2E+02 0.0048 27.1 6.3 28 264-293 323-353 (519)
137 KOG0289 mRNA splicing factor [ 26.1 6E+02 0.013 24.5 18.9 115 211-337 354-471 (506)
138 PLN02772 guanylate kinase 24.8 5.7E+02 0.012 24.4 8.9 60 258-317 28-93 (398)
139 PF07250 Glyoxal_oxid_N: Glyox 24.7 2.2E+02 0.0048 25.1 5.9 86 232-320 47-138 (243)
140 PTZ00421 coronin; Provisional 24.6 6.9E+02 0.015 24.7 13.2 63 266-332 139-202 (493)
141 KOG0278 Serine/threonine kinas 24.4 3.9E+02 0.0084 23.8 7.1 21 264-286 278-298 (334)
142 PF00568 WH1: WH1 domain; Int 24.1 2E+02 0.0044 21.6 5.0 39 119-169 16-55 (111)
143 PF13088 BNR_2: BNR repeat-lik 23.8 4.9E+02 0.011 22.7 14.3 125 184-314 135-274 (275)
144 KOG0283 WD40 repeat-containing 23.7 1.7E+02 0.0037 30.0 5.5 53 275-333 430-486 (712)
145 cd00260 Sialidase Sialidases o 23.5 5.8E+02 0.013 23.4 11.8 113 183-295 112-241 (351)
146 KOG0293 WD40 repeat-containing 23.1 3.2E+02 0.0069 26.1 6.7 71 264-338 406-480 (519)
147 PF15408 PH_7: Pleckstrin homo 22.8 31 0.00068 24.6 0.2 23 24-46 77-99 (104)
148 KOG1063 RNA polymerase II elon 22.4 6.7E+02 0.014 25.7 9.1 113 251-366 314-437 (764)
149 PF14583 Pectate_lyase22: Olig 22.4 4.6E+02 0.01 24.9 7.8 103 229-335 166-279 (386)
150 KOG1274 WD40 repeat protein [G 22.2 9.6E+02 0.021 25.5 11.4 112 210-332 60-172 (933)
151 KOG1920 IkappaB kinase complex 22.2 1.1E+03 0.024 26.1 12.0 68 231-300 266-336 (1265)
152 KOG0640 mRNA cleavage stimulat 22.1 6.2E+02 0.013 23.3 10.7 131 230-367 237-380 (430)
153 PF14157 YmzC: YmzC-like prote 21.5 1.3E+02 0.0029 20.1 2.9 27 310-336 29-57 (63)
154 PTZ00420 coronin; Provisional 21.3 8.6E+02 0.019 24.6 22.7 116 215-336 178-301 (568)
155 PF15232 DUF4585: Domain of un 21.2 2E+02 0.0042 20.1 3.8 15 154-168 32-46 (75)
156 KOG2321 WD40 repeat protein [G 20.8 8.2E+02 0.018 24.6 9.1 97 230-331 154-261 (703)
157 TIGR02658 TTQ_MADH_Hv methylam 20.7 7E+02 0.015 23.3 23.8 114 214-335 204-338 (352)
158 KOG1539 WD repeat protein [Gen 20.7 4.6E+02 0.01 27.5 7.7 100 216-331 460-567 (910)
159 PLN02919 haloacid dehalogenase 20.6 1.2E+03 0.025 25.8 22.8 114 215-335 694-840 (1057)
160 PF07861 WND: WisP family N-Te 20.5 1.2E+02 0.0026 25.3 3.1 31 103-133 34-64 (263)
161 KOG0281 Beta-TrCP (transducin 20.5 7.1E+02 0.015 23.3 12.3 65 211-286 325-389 (499)
162 cd00200 WD40 WD40 domain, foun 20.3 5.1E+02 0.011 21.6 19.9 94 230-331 156-252 (289)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=2.2e-33 Score=246.60 Aligned_cols=215 Identities=26% Similarity=0.383 Sum_probs=164.0
Q ss_pred ccceeceEEEecCCCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccce
Q 036621 105 KGLYCGIVFIEGLNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSL 184 (376)
Q Consensus 105 ~~s~~Gll~~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
++|||||||+... ..++||||+||+++.||+++....... ...++||||+.+++||||++.. ....... ..
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~---~~~~~~G~d~~~~~YKVv~~~~---~~~~~~~--~~ 71 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKE---SDTYFLGYDPIEKQYKVLCFSD---RSGNRNQ--SE 71 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccc---cceEEEeecccCCcEEEEEEEe---ecCCCCC--cc
Confidence 4799999999876 789999999999999998764211111 0147999999999999999954 1111123 68
Q ss_pred EEEEEcCCCceEeccCCCc-cccCCcceeEeCceEEEEecccCCCCceEEEEEEcCcccee-eecCCCCCCCC-CceEEE
Q 036621 185 VAVYTLRTNSWKNLKPIDY-TMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQ-EIQGPCILESS-LDVTLG 261 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~p~-~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~-~~~~l~ 261 (376)
++||++++++||.++..+. .... ..+|++||++||+...........|++||+.+|+|+ .+++|...... ....|+
T Consensus 72 ~~Vys~~~~~Wr~~~~~~~~~~~~-~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~ 150 (230)
T TIGR01640 72 HQVYTLGSNSWRTIECSPPHHPLK-SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLI 150 (230)
T ss_pred EEEEEeCCCCccccccCCCCcccc-CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEE
Confidence 9999999999999984333 2222 339999999999997643212238999999999999 58999865422 256899
Q ss_pred EECCeEEEEEEecCCCEEEEEEecC---CceeeEEEEccCCc---e---eEeEEEeeCCcEEEEecC--CE-EEEEECCC
Q 036621 262 IYYQSLSLLILDNVDHCFKIWVMRK---KNWIKQLTVGPFIG---I---FQPLLFWKKGAFFVESNS--SQ-LLLYEPGT 329 (376)
Q Consensus 262 ~~~G~L~~~~~~~~~~~l~iW~l~~---~~W~~~~~i~~~~~---~---~~~~~~~~~~~l~~~~~~--~~-~~~yd~~~ 329 (376)
+++|+||++.......+++||+|++ .+|++.++| +... + ..+.++.++|+|++...+ +. +++||+++
T Consensus 151 ~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i-~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~ 229 (230)
T TIGR01640 151 NYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTV-PIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGE 229 (230)
T ss_pred EECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEE-cCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccC
Confidence 9999999999853345699999997 679999999 5422 2 347888899999888764 44 99999998
Q ss_pred C
Q 036621 330 G 330 (376)
Q Consensus 330 ~ 330 (376)
+
T Consensus 230 ~ 230 (230)
T TIGR01640 230 N 230 (230)
T ss_pred C
Confidence 5
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.70 E-value=1.2e-15 Score=126.28 Aligned_cols=138 Identities=25% Similarity=0.502 Sum_probs=102.2
Q ss_pred eeEeCceEEEEecccCCCCceEEEEEEcCccce-eeecCCCCCC-CCCceEEEEE-CCeEEEEEEecCCCEEEEEEecC-
Q 036621 211 RTYFDGAFYWLLKLENDNDSYVILSFNMADEKF-QEIQGPCILE-SSLDVTLGIY-YQSLSLLILDNVDHCFKIWVMRK- 286 (376)
Q Consensus 211 ~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~-~~~~~~l~~~-~G~L~~~~~~~~~~~l~iW~l~~- 286 (376)
+|++||++||++..........|++||+++|+| ..+++|.... ......|.+. +|+||++........++||+|++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 589999999999876433233899999999999 7889998877 2346677555 78999998754456799999994
Q ss_pred ----CceeeEEEEccCCce--------eEeEEEeeCCcEEEEecC-------CEEEEEECCCCCEEEEEEe---eceeEE
Q 036621 287 ----KNWIKQLTVGPFIGI--------FQPLLFWKKGAFFVESNS-------SQLLLYEPGTGELRDFELE---CCWFSV 344 (376)
Q Consensus 287 ----~~W~~~~~i~~~~~~--------~~~~~~~~~~~l~~~~~~-------~~~~~yd~~~~~~~~v~~~---~~~~~~ 344 (376)
++|++..+| +.... ...+.+..++++++..+. ..+++|+ +++..+++.++ ..++.+
T Consensus 81 ~~~~~SWtK~~~i-~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~~ 158 (164)
T PF07734_consen 81 GYGKESWTKLFTI-DLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPSI 158 (164)
T ss_pred ccCcceEEEEEEE-ecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCCE
Confidence 699999999 44432 122334455667665441 3477887 77888888875 357789
Q ss_pred EEeecc
Q 036621 345 YIYTES 350 (376)
Q Consensus 345 ~~y~~s 350 (376)
+.|+||
T Consensus 159 ~~YvpS 164 (164)
T PF07734_consen 159 CNYVPS 164 (164)
T ss_pred EEECCC
Confidence 999997
No 3
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.57 E-value=1.7e-12 Score=118.44 Aligned_cols=318 Identities=14% Similarity=0.131 Sum_probs=165.4
Q ss_pred CCCCCCcHHHHHHHHccCCc-cccccccccchhhHhhcCChHHHHHHHhc-CCCCceEEEEeeeCCCCCCCcceeeeecC
Q 036621 4 LGNDDSPEDITIEILSRLPV-KSLIRLRCVCKSWYALIKDPNFISMHLKN-DVNTRLIVLYAKEDDTEEHSHPKEYFCLF 81 (376)
Q Consensus 4 ~~~~~LP~Dll~~IL~rLp~-~~l~r~r~VcK~W~~lis~p~F~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (376)
+.++.||+|||..|..|||. -+++|+|+|||+||+.+.... + .. .+..|+.++. ... +..++ .
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~--~~~~~~~~~~~~~-~~~--~~~~~-------~ 66 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K--KNPFRTRPLILFN-PIN--PSETL-------T 66 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c--cCCcccccccccC-ccc--CCCCc-------c
Confidence 46899999999999999986 899999999999999876411 0 00 0111211111 000 00011 0
Q ss_pred CCC-CceeccCCCCCCCCcccc-ccccceeceEEEecC---CCeEEEEecCcccceecCCCccCCC-CccccccceEEE-
Q 036621 82 PDE-TLEDLSLQDLSTQEPVLG-SFKGLYCGIVFIEGL---NNRITLWNIATRESITLPKYRAIIP-QYTRVFGTKIGF- 154 (376)
Q Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~-~~~~s~~Gll~~~~~---~~~~~v~NP~T~~~~~LP~~~~~~~-~~~~~~~~~~~~- 154 (376)
++. ..........+. ..++. ..-++..|+|.-... ..++.+.||+++....+|+-..... ..+......+.+
T Consensus 67 ~~~~~~~~~~~~ls~~-~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~ 145 (373)
T PLN03215 67 DDRSYISRPGAFLSRA-AFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVL 145 (373)
T ss_pred ccccccccccceeeee-EEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEE
Confidence 000 000000000000 00001 112356899877653 4789999999999888774322111 011111111222
Q ss_pred eeeCC---CCCeE-EEEEEEEecCCCCCCcccceEEEEEc------CCCceEeccCCCccccCCcceeEeCceEEEEecc
Q 036621 155 GLDPK---TKDYK-VVLILTLWDEKRDSSCAFSLVAVYTL------RTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKL 224 (376)
Q Consensus 155 g~d~~---~~~yk-vv~~~~~~~~~~~~~~~~~~~~vyss------~t~~W~~~~~~p~~~~~~~~~v~~~G~lYwl~~~ 224 (376)
+.+.. ...|+ ++.+. ....+. ... ..+-|+.- ..++|..++.....+. .-++.+|.+|.+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~--~vl~i~~~g~l~~w~~~~Wt~l~~~~~~~~---DIi~~kGkfYAvD~- 217 (373)
T PLN03215 146 DWAKRRETRPGYQRSALVK-VKEGDN-HRD--GVLGIGRDGKINYWDGNVLKALKQMGYHFS---DIIVHKGQTYALDS- 217 (373)
T ss_pred ecccccccccceeEEEEEE-eecCCC-cce--EEEEEeecCcEeeecCCeeeEccCCCceee---EEEEECCEEEEEcC-
Confidence 11100 00121 11111 000000 000 11122211 2478888874333443 48999999999853
Q ss_pred cCCCCceEEEEEEcCccceeeec-C-CCCCCC---CCceEEEEECCeEEEEEEec---------------CCCEEEEEEe
Q 036621 225 ENDNDSYVILSFNMADEKFQEIQ-G-PCILES---SLDVTLGIYYQSLSLLILDN---------------VDHCFKIWVM 284 (376)
Q Consensus 225 ~~~~~~~~il~fD~~~~~~~~i~-~-P~~~~~---~~~~~l~~~~G~L~~~~~~~---------------~~~~l~iW~l 284 (376)
.+.+.++|.+- +.+.+. . ...... .....|+++.|+|.+|.... ....++|+++
T Consensus 218 -----~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vfkl 291 (373)
T PLN03215 218 -----IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKF 291 (373)
T ss_pred -----CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEE
Confidence 34677777432 122221 1 111111 12567999999999998831 1246899999
Q ss_pred cC--CceeeEEEEccCCce---eEeEEEe-------eCCcEEEEecCCEEEEEECCCCCEEEEEEe---eceeEEEEeec
Q 036621 285 RK--KNWIKQLTVGPFIGI---FQPLLFW-------KKGAFFVESNSSQLLLYEPGTGELRDFELE---CCWFSVYIYTE 349 (376)
Q Consensus 285 ~~--~~W~~~~~i~~~~~~---~~~~~~~-------~~~~l~~~~~~~~~~~yd~~~~~~~~v~~~---~~~~~~~~y~~ 349 (376)
+. .+|+++.+++....+ ....++. ..+.|||. ++....+||++.++...+... ....++-.|+|
T Consensus 292 D~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt-dd~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~ 370 (373)
T PLN03215 292 DDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT-EDTMPKVFKLDNGNGSSIETTISESSQSSFEMFVP 370 (373)
T ss_pred cCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE-CCCcceEEECCCCCccceEeecCccccchheeecc
Confidence 87 899999988533221 1111111 23446665 466688999999998877654 33344667777
Q ss_pred ccc
Q 036621 350 SLI 352 (376)
Q Consensus 350 sl~ 352 (376)
|++
T Consensus 371 ~~~ 373 (373)
T PLN03215 371 SFL 373 (373)
T ss_pred ccC
Confidence 764
No 4
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.54 E-value=1.6e-13 Score=108.86 Aligned_cols=105 Identities=30% Similarity=0.441 Sum_probs=80.4
Q ss_pred eeEeCceEEEEecccCCCCceEEEEEEcCccceeeecCCC-CCCCCCceEEEEECCeEEEEEEecC--CCEEEEEEecC-
Q 036621 211 RTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPC-ILESSLDVTLGIYYQSLSLLILDNV--DHCFKIWVMRK- 286 (376)
Q Consensus 211 ~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~-~~~~~~~~~l~~~~G~L~~~~~~~~--~~~l~iW~l~~- 286 (376)
++++||.+||++... ......|++||+.+|+|+.|++|. .........|.+++|+|+++..... ...++||+|+|
T Consensus 1 gicinGvly~~a~~~-~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 1 GICINGVLYWLAWSE-DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred CEEECcEEEeEEEEC-CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 589999999999872 124789999999999999999982 2222247889999999999998432 25799999998
Q ss_pred --CceeeEEEEccCCc-------eeEeEEEeeCCcEEEE
Q 036621 287 --KNWIKQLTVGPFIG-------IFQPLLFWKKGAFFVE 316 (376)
Q Consensus 287 --~~W~~~~~i~~~~~-------~~~~~~~~~~~~l~~~ 316 (376)
++|+++..+-|... ...+.++.++|++++.
T Consensus 80 ~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 80 EKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred ccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 89999877523321 2566777777887766
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.42 E-value=7.6e-12 Score=123.24 Aligned_cols=211 Identities=11% Similarity=0.054 Sum_probs=144.1
Q ss_pred ccceeceEEEecC-------CCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCC
Q 036621 105 KGLYCGIVFIEGL-------NNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRD 177 (376)
Q Consensus 105 ~~s~~Gll~~~~~-------~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~ 177 (376)
.+..+|.|.+.++ ...+..+||.+++|..+|+++...... ....++ =+|..++. + ++.
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-------~~~~~~-----g~IYviGG-~--~~~ 363 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-------SLAVID-----DTIYAIGG-Q--NGT 363 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-------eEEEEC-----CEEEEECC-c--CCC
Confidence 4555777766654 245889999999999999887543221 111222 24555533 2 111
Q ss_pred CCcccceEEEEEcCCCceEeccCCCccccCCcceeEeCceEEEEecccCCC------------------CceEEEEEEcC
Q 036621 178 SSCAFSLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDN------------------DSYVILSFNMA 239 (376)
Q Consensus 178 ~~~~~~~~~vyss~t~~W~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~------------------~~~~il~fD~~ 239 (376)
... ..+++|+..++.|+.+++||..... .+.+.++|.+|.+++..... ....+.+||+.
T Consensus 364 ~~~--~sve~Ydp~~~~W~~~~~mp~~r~~-~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~ 440 (557)
T PHA02713 364 NVE--RTIECYTMGDDKWKMLPDMPIALSS-YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV 440 (557)
T ss_pred CCC--ceEEEEECCCCeEEECCCCCccccc-ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCC
Confidence 122 5799999999999999988885544 55889999999998753210 13569999999
Q ss_pred ccceeee-cCCCCCCCCCceEEEEECCeEEEEEEecCC----CEEEEEEecC-CceeeEEEEccCCceeEeEEEeeCCcE
Q 036621 240 DEKFQEI-QGPCILESSLDVTLGIYYQSLSLLILDNVD----HCFKIWVMRK-KNWIKQLTVGPFIGIFQPLLFWKKGAF 313 (376)
Q Consensus 240 ~~~~~~i-~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~----~~l~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~l 313 (376)
+++|+.+ ++|.... ...+++++|+|+++++.... ..++.+-.+. ++|+.+..| +.+......+ ..+|+|
T Consensus 441 td~W~~v~~m~~~r~---~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~~-~~~~~i 515 (557)
T PHA02713 441 NNIWETLPNFWTGTI---RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHTI-LHDNTI 515 (557)
T ss_pred CCeEeecCCCCcccc---cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-CcccccceeE-EECCEE
Confidence 9999988 6655543 35678999999999874211 2234444444 589999988 7665433233 346788
Q ss_pred EEEec-CC--EEEEEECCCCCEEEEEEe
Q 036621 314 FVESN-SS--QLLLYEPGTGELRDFELE 338 (376)
Q Consensus 314 ~~~~~-~~--~~~~yd~~~~~~~~v~~~ 338 (376)
++..+ ++ .+-.||++|++|..+...
T Consensus 516 yv~Gg~~~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 516 MMLHCYESYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred EEEeeecceeehhhcCcccccccchhhh
Confidence 88765 22 489999999999988765
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.37 E-value=3.6e-11 Score=118.19 Aligned_cols=212 Identities=10% Similarity=0.085 Sum_probs=150.1
Q ss_pred ccccceeceEEEecC-------CCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCC
Q 036621 103 SFKGLYCGIVFIEGL-------NNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEK 175 (376)
Q Consensus 103 ~~~~s~~Gll~~~~~-------~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~ 175 (376)
..++..+|.|.+.++ .+.+..+||.+++|..+|++...+... +.+.- ..++..++. .+
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~--------~v~~l----~g~iYavGG---~d 390 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF--------GVAVL----DGKLYAVGG---FD 390 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc--------eeEEE----CCEEEEEec---cc
Confidence 456677888877663 246899999999999999998753321 22211 234555543 22
Q ss_pred CCCCcccceEEEEEcCCCceEeccCCCccccCCcceeEeCceEEEEecccCCC-CceEEEEEEcCccceeee-cCCCCCC
Q 036621 176 RDSSCAFSLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDN-DSYVILSFNMADEKFQEI-QGPCILE 253 (376)
Q Consensus 176 ~~~~~~~~~~~vyss~t~~W~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~-~~~~il~fD~~~~~~~~i-~~P~~~~ 253 (376)
+.... ..+|.|+..++.|..+++|+..... .+.+.++|.+|-+++..... ....+.+||+.+++|+.+ +++..+.
T Consensus 391 g~~~l--~svE~YDp~~~~W~~va~m~~~r~~-~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~ 467 (571)
T KOG4441|consen 391 GEKSL--NSVECYDPVTNKWTPVAPMLTRRSG-HGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS 467 (571)
T ss_pred ccccc--ccEEEecCCCCcccccCCCCcceee-eEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc
Confidence 22333 6899999999999999988874433 66999999999999865443 457899999999999998 7777665
Q ss_pred CCCceEEEEECCeEEEEEEecC---CCEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCcEEEEecC------CEEEE
Q 036621 254 SSLDVTLGIYYQSLSLLILDNV---DHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNS------SQLLL 324 (376)
Q Consensus 254 ~~~~~~l~~~~G~L~~~~~~~~---~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~ 324 (376)
...+++++|+|+++++.+. ..+++..-.....|+.+..| ...... .-++..++.+|+..+. ..+-.
T Consensus 468 ---~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m-~~~rs~-~g~~~~~~~ly~vGG~~~~~~l~~ve~ 542 (571)
T KOG4441|consen 468 ---GFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM-TSPRSA-VGVVVLGGKLYAVGGFDGNNNLNTVEC 542 (571)
T ss_pred ---cceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC-cccccc-ccEEEECCEEEEEecccCccccceeEE
Confidence 3668999999999999543 22334444444999999777 444422 2222345667776542 24999
Q ss_pred EECCCCCEEEEEE
Q 036621 325 YEPGTGELRDFEL 337 (376)
Q Consensus 325 yd~~~~~~~~v~~ 337 (376)
||+++++|+...-
T Consensus 543 ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 543 YDPETDTWTEVTE 555 (571)
T ss_pred cCCCCCceeeCCC
Confidence 9999999998754
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.36 E-value=7.4e-11 Score=116.32 Aligned_cols=196 Identities=15% Similarity=0.130 Sum_probs=132.5
Q ss_pred eEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEEEEcCCCceEecc
Q 036621 120 RITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNLK 199 (376)
Q Consensus 120 ~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (376)
.+..+||.+++|..+++++...... .. ...+ =+|..++. +... .... ..++.|+..++.|+.++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~------~~-a~l~-----~~IYviGG-~~~~-~~~~--~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINY------AS-AIVD-----NEIIIAGG-YNFN-NPSL--NKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccce------EE-EEEC-----CEEEEEcC-CCCC-CCcc--ceEEEEECCCCeEeeCC
Confidence 5678999999999999887643211 11 1111 14555533 1111 1112 57899999999999999
Q ss_pred CCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeee-cCCCCCCCCCceEEEEECCeEEEEEEecCC--
Q 036621 200 PIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEI-QGPCILESSLDVTLGIYYQSLSLLILDNVD-- 276 (376)
Q Consensus 200 ~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~-- 276 (376)
+|+..+.. ...+.++|++|.+++.........+.+||+.+++|+.+ ++|.... ....++++|+|+++++....
T Consensus 337 ~m~~~R~~-~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~---~~~~~~~~g~IYviGG~~~~~~ 412 (557)
T PHA02713 337 PMIKNRCR-FSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS---SYGMCVLDQYIYIIGGRTEHID 412 (557)
T ss_pred CCcchhhc-eeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc---cccEEEECCEEEEEeCCCcccc
Confidence 88875444 56899999999999864322345799999999999998 6666554 35567889999999884211
Q ss_pred -------------------CEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCcEEEEecC-------CEEEEEECCC-
Q 036621 277 -------------------HCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNS-------SQLLLYEPGT- 329 (376)
Q Consensus 277 -------------------~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~yd~~~- 329 (376)
..++.+-.+.+.|+.+..+ +..... .-.+..+|.||+..+. ..+..||+++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-~~~r~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~ 490 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-WTGTIR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTY 490 (557)
T ss_pred cccccccccccccccccccceEEEECCCCCeEeecCCC-Cccccc-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCC
Confidence 2233333334899998877 555432 2334456788877542 2367999999
Q ss_pred CCEEEEEE
Q 036621 330 GELRDFEL 337 (376)
Q Consensus 330 ~~~~~v~~ 337 (376)
++|+.+..
T Consensus 491 ~~W~~~~~ 498 (557)
T PHA02713 491 NGWELITT 498 (557)
T ss_pred CCeeEccc
Confidence 89998764
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.35 E-value=6.1e-11 Score=116.61 Aligned_cols=208 Identities=13% Similarity=0.140 Sum_probs=149.0
Q ss_pred ceeceEEEecC-------CCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCC
Q 036621 107 LYCGIVFIEGL-------NNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSS 179 (376)
Q Consensus 107 s~~Gll~~~~~-------~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 179 (376)
+..|.|...++ ...+..+||.+++|..+.+++...... +.+.-. -+|..++. ++. + .
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~--------~~~~~~----~~lYv~GG-~~~-~--~ 345 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRV--------GVAVLN----GKLYVVGG-YDS-G--S 345 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccc--------cEEEEC----CEEEEEcc-ccC-C--C
Confidence 45555555442 256789999999999999988654321 222211 15555543 221 1 2
Q ss_pred cccceEEEEEcCCCceEeccCCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeee-cCCCCCCCCCce
Q 036621 180 CAFSLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEI-QGPCILESSLDV 258 (376)
Q Consensus 180 ~~~~~~~vyss~t~~W~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~ 258 (376)
.....++.|++.++.|..+++|+..+.. .+.+.++|.+|.+++.........+..||+.+++|... +++.... ..
T Consensus 346 ~~l~~ve~YD~~~~~W~~~a~M~~~R~~-~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~---~~ 421 (571)
T KOG4441|consen 346 DRLSSVERYDPRTNQWTPVAPMNTKRSD-FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS---GH 421 (571)
T ss_pred cccceEEEecCCCCceeccCCccCcccc-ceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCccee---ee
Confidence 2227899999999999999988885555 66999999999999986544566899999999999998 5766433 57
Q ss_pred EEEEECCeEEEEEEecCC----CEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCcEEEEecCC------EEEEEECC
Q 036621 259 TLGIYYQSLSLLILDNVD----HCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSS------QLLLYEPG 328 (376)
Q Consensus 259 ~l~~~~G~L~~~~~~~~~----~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~yd~~ 328 (376)
..++++|+||++++.+.. ..++.+-...+.|+.+..| +.......++ .-++.||.+.+.. .+-.||++
T Consensus 422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M-~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM-NTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc-ccccccceEE-EECCEEEEECCccCCCccceEEEEcCC
Confidence 788999999999994322 3445555545999999998 6665433333 4457888876622 38999999
Q ss_pred CCCEEEEE
Q 036621 329 TGELRDFE 336 (376)
Q Consensus 329 ~~~~~~v~ 336 (376)
+++|..+.
T Consensus 500 ~~~W~~v~ 507 (571)
T KOG4441|consen 500 TNQWTMVA 507 (571)
T ss_pred CCceeEcc
Confidence 99999996
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=99.31 E-value=3.7e-10 Score=109.68 Aligned_cols=194 Identities=10% Similarity=0.033 Sum_probs=133.7
Q ss_pred eeceEEEecC------CCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcc
Q 036621 108 YCGIVFIEGL------NNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCA 181 (376)
Q Consensus 108 ~~Gll~~~~~------~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~ 181 (376)
.++.|.+.++ ...+..+||.++.|..+|+++...... . +...+ =++..++. .. ..
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~------~-~v~~~-----~~iYviGG-~~-----~~- 330 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA------S-GVPAN-----NKLYVVGG-LP-----NP- 330 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc------e-EEEEC-----CEEEEECC-cC-----CC-
Confidence 4566655543 245788999999999999887643221 1 11122 14444432 11 11
Q ss_pred cceEEEEEcCCCceEeccCCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeee-cCCCCCCCCCceEE
Q 036621 182 FSLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEI-QGPCILESSLDVTL 260 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~l 260 (376)
..++.|+..++.|..+++||..... ...+.++|.+|.+++... ....+.+||+.+++|+.+ ++|.... ....
T Consensus 331 -~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~~g~IYviGG~~~--~~~~ve~ydp~~~~W~~~~~m~~~r~---~~~~ 403 (480)
T PHA02790 331 -TSVERWFHGDAAWVNMPSLLKPRCN-PAVASINNVIYVIGGHSE--TDTTTEYLLPNHDQWQFGPSTYYPHY---KSCA 403 (480)
T ss_pred -CceEEEECCCCeEEECCCCCCCCcc-cEEEEECCEEEEecCcCC--CCccEEEEeCCCCEEEeCCCCCCccc---cceE
Confidence 4689999999999999988875544 668999999999998642 235688999999999998 4544433 3566
Q ss_pred EEECCeEEEEEEecCCCEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCcEEEEecC------CEEEEEECCCCCEEE
Q 036621 261 GIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNS------SQLLLYEPGTGELRD 334 (376)
Q Consensus 261 ~~~~G~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~yd~~~~~~~~ 334 (376)
++.+|+|+++++. .+++-.+.+.|+.+..+ +.+.... -++.-+|+||+..+. ..+..||+++++|+-
T Consensus 404 ~~~~~~IYv~GG~-----~e~ydp~~~~W~~~~~m-~~~r~~~-~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 404 LVFGRRLFLVGRN-----AEFYCESSNTWTLIDDP-IYPRDNP-ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred EEECCEEEEECCc-----eEEecCCCCcEeEcCCC-CCCcccc-EEEEECCEEEEECCcCCCcccceEEEEECCCCeEEe
Confidence 7889999999752 34555555999998877 6554322 233456788887652 358899999999974
No 10
>PHA03098 kelch-like protein; Provisional
Probab=99.27 E-value=4.6e-10 Score=111.00 Aligned_cols=196 Identities=10% Similarity=0.065 Sum_probs=131.4
Q ss_pred CeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEEEEcCCCceEec
Q 036621 119 NRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNL 198 (376)
Q Consensus 119 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
..++.+||.|++|..+|+++...... . ....+ =++..++. +. ..... ..+++|+..+++|+..
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~------~-~~~~~-----~~lyv~GG-~~--~~~~~--~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNP------G-VTVFN-----NRIYVIGG-IY--NSISL--NTVESWKPGESKWREE 373 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccc------e-EEEEC-----CEEEEEeC-CC--CCEec--ceEEEEcCCCCceeeC
Confidence 36899999999999999877542221 1 11111 13444433 11 11122 5789999999999999
Q ss_pred cCCCccccCCcceeEeCceEEEEecccCC-CCceEEEEEEcCccceeee-cCCCCCCCCCceEEEEECCeEEEEEEecCC
Q 036621 199 KPIDYTMRLSSERTYFDGAFYWLLKLEND-NDSYVILSFNMADEKFQEI-QGPCILESSLDVTLGIYYQSLSLLILDNVD 276 (376)
Q Consensus 199 ~~~p~~~~~~~~~v~~~G~lYwl~~~~~~-~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~ 276 (376)
+++|..... ...+.++|.+|.+++.... .....+..||+.+++|+.+ ++|.... ....+..+|+|+++++....
T Consensus 374 ~~lp~~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~---~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 374 PPLIFPRYN-PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY---GGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred CCcCcCCcc-ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc---CceEEEECCEEEEECCccCC
Confidence 888775444 5678899999999875321 1246799999999999988 5665543 34567789999999883211
Q ss_pred C----EEEEEEecC--CceeeEEEEccCCceeEeEEEeeCCcEEEEecC------CEEEEEECCCCCEEEEEE
Q 036621 277 H----CFKIWVMRK--KNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNS------SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 277 ~----~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~yd~~~~~~~~v~~ 337 (376)
. .-.+|..+- .+|+.+..+ +.+......+ ..++.+++..+. ..+..||+++++|+.+.-
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~-~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSL-NFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCC-CcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 1 123666665 899998766 5544322222 336778776542 359999999999988754
No 11
>PLN02153 epithiospecifier protein
Probab=99.19 E-value=8.4e-09 Score=96.06 Aligned_cols=204 Identities=12% Similarity=0.092 Sum_probs=122.7
Q ss_pred CeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEEEEcCCCceEec
Q 036621 119 NRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNL 198 (376)
Q Consensus 119 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
..++++||.+++|..+|+........ ..++...... =+++.++. +.. .... ..+++|+..++.|+.+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~------~~~~~~~~~~--~~iyv~GG-~~~--~~~~--~~v~~yd~~t~~W~~~ 116 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRIS------CLGVRMVAVG--TKLYIFGG-RDE--KREF--SDFYSYDTVKNEWTFL 116 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCc------cCceEEEEEC--CEEEEECC-CCC--CCcc--CcEEEEECCCCEEEEe
Confidence 46999999999999988654221111 0111110001 14555432 111 1112 4789999999999998
Q ss_pred cCC-----CccccCCcceeEeCceEEEEecccCCC------CceEEEEEEcCccceeeecCCCCC-CCCCceEEEEECCe
Q 036621 199 KPI-----DYTMRLSSERTYFDGAFYWLLKLENDN------DSYVILSFNMADEKFQEIQGPCIL-ESSLDVTLGIYYQS 266 (376)
Q Consensus 199 ~~~-----p~~~~~~~~~v~~~G~lYwl~~~~~~~------~~~~il~fD~~~~~~~~i~~P~~~-~~~~~~~l~~~~G~ 266 (376)
+.+ |..+.. ...+..+|.+|.+++..... ....+.+||+.+++|..++.+... .......++..+|+
T Consensus 117 ~~~~~~~~p~~R~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~ 195 (341)
T PLN02153 117 TKLDEEGGPEARTF-HSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGK 195 (341)
T ss_pred ccCCCCCCCCCcee-eEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCe
Confidence 765 333333 55788999999998763210 124688999999999988533211 11113456778999
Q ss_pred EEEEEEecC-----------CCEEEEEEecCCceeeEEEEc--cCCceeEeEEEeeCCcEEEEecC--------------
Q 036621 267 LSLLILDNV-----------DHCFKIWVMRKKNWIKQLTVG--PFIGIFQPLLFWKKGAFFVESNS-------------- 319 (376)
Q Consensus 267 L~~~~~~~~-----------~~~l~iW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~~~l~~~~~~-------------- 319 (376)
|+++..... ...+.++-++..+|+++...+ |...... .++.-++.||+..+.
T Consensus 196 iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 274 (341)
T PLN02153 196 IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVF-AHAVVGKYIIIFGGEVWPDLKGHLGPGTL 274 (341)
T ss_pred EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCccee-eeEEECCEEEEECcccCCccccccccccc
Confidence 999876210 123344444449999987542 3222211 223344667665442
Q ss_pred -CEEEEEECCCCCEEEEEE
Q 036621 320 -SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 320 -~~~~~yd~~~~~~~~v~~ 337 (376)
..++.||+++++|+++..
T Consensus 275 ~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 275 SNEGYALDTETLVWEKLGE 293 (341)
T ss_pred cccEEEEEcCccEEEeccC
Confidence 158999999999998863
No 12
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.11 E-value=1.9e-08 Score=93.02 Aligned_cols=150 Identities=15% Similarity=0.113 Sum_probs=102.8
Q ss_pred ceEEEEEcCCCce----EeccCCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeee-cCCCCCCCCCc
Q 036621 183 SLVAVYTLRTNSW----KNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEI-QGPCILESSLD 257 (376)
Q Consensus 183 ~~~~vyss~t~~W----~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~ 257 (376)
..++.|+..++.| +.++++|..... ..++.++|++|.+++.........+.+||+.+++|+.+ ++|..... .
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~-~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~--~ 164 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFEN-GSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRV--Q 164 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccC-ceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCC--c
Confidence 5788999999887 666677774444 56888999999998753322356799999999999998 46643222 3
Q ss_pred eEEEEECCeEEEEEEecCCCEEEEEEecC--CceeeEEEEccCCc-----eeEeEEEeeCCcEEEEecC-----------
Q 036621 258 VTLGIYYQSLSLLILDNVDHCFKIWVMRK--KNWIKQLTVGPFIG-----IFQPLLFWKKGAFFVESNS----------- 319 (376)
Q Consensus 258 ~~l~~~~G~L~~~~~~~~~~~l~iW~l~~--~~W~~~~~i~~~~~-----~~~~~~~~~~~~l~~~~~~----------- 319 (376)
...+..+|+|+++.........+++..+- .+|+.+..+ +... ......+..++.|++..+.
T Consensus 165 ~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 243 (323)
T TIGR03548 165 PVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADP-TTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVID 243 (323)
T ss_pred ceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCC-CCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhh
Confidence 45678899999999853222334566654 899988765 2211 1111122335667665431
Q ss_pred ---------------------------CEEEEEECCCCCEEEEE
Q 036621 320 ---------------------------SQLLLYEPGTGELRDFE 336 (376)
Q Consensus 320 ---------------------------~~~~~yd~~~~~~~~v~ 336 (376)
..+.+||+++++|+.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 244 LATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred hhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 35999999999999887
No 13
>PLN02193 nitrile-specifier protein
Probab=99.10 E-value=1.6e-08 Score=98.00 Aligned_cols=204 Identities=12% Similarity=0.058 Sum_probs=125.5
Q ss_pred CeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEEEEcCCCceEec
Q 036621 119 NRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNL 198 (376)
Q Consensus 119 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
..++++||.+++|..+|........... ......++ =++..++. +.. .... ..+++|++.++.|+.+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~---~~~~v~~~-----~~lYvfGG-~~~--~~~~--ndv~~yD~~t~~W~~l 259 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCL---GVRMVSIG-----STLYVFGG-RDA--SRQY--NGFYSFDTTTNEWKLL 259 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCccc---ceEEEEEC-----CEEEEECC-CCC--CCCC--ccEEEEECCCCEEEEc
Confidence 3589999999999988754211110000 00111122 13444422 111 1122 5789999999999998
Q ss_pred cCC---CccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeeecCCCCCCCC-CceEEEEECCeEEEEEEec
Q 036621 199 KPI---DYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESS-LDVTLGIYYQSLSLLILDN 274 (376)
Q Consensus 199 ~~~---p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~-~~~~l~~~~G~L~~~~~~~ 274 (376)
+.+ |..+.. ...+..++.+|.+++.........+.+||+.+++|+.++.|...... ....++..+|+++++....
T Consensus 260 ~~~~~~P~~R~~-h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~ 338 (470)
T PLN02193 260 TPVEEGPTPRSF-HSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFN 338 (470)
T ss_pred CcCCCCCCCccc-eEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCC
Confidence 866 333333 55778899999998764322345789999999999988654322111 2356677899999998742
Q ss_pred CCCEEEEEEecC--CceeeEEEEc--cCCceeEeEEEeeCCcEEEEecC---------------CEEEEEECCCCCEEEE
Q 036621 275 VDHCFKIWVMRK--KNWIKQLTVG--PFIGIFQPLLFWKKGAFFVESNS---------------SQLLLYEPGTGELRDF 335 (376)
Q Consensus 275 ~~~~l~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~yd~~~~~~~~v 335 (376)
....-++|+++- .+|+++..++ |..... ..++..++.|++..+. ..+++||++|++|+++
T Consensus 339 g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 339 GCEVDDVHYYDPVQDKWTQVETFGVRPSERSV-FASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCccCceEEEECCCCEEEEeccCCCCCCCcce-eEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 222235566654 8999987653 222222 2233445677665441 1389999999999988
Q ss_pred EE
Q 036621 336 EL 337 (376)
Q Consensus 336 ~~ 337 (376)
..
T Consensus 418 ~~ 419 (470)
T PLN02193 418 DK 419 (470)
T ss_pred cc
Confidence 63
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.05 E-value=8.5e-08 Score=89.55 Aligned_cols=215 Identities=12% Similarity=0.109 Sum_probs=131.1
Q ss_pred ceeceEEEecC--CCeEEEEec--CcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCC--CCc
Q 036621 107 LYCGIVFIEGL--NNRITLWNI--ATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRD--SSC 180 (376)
Q Consensus 107 s~~Gll~~~~~--~~~~~v~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~--~~~ 180 (376)
..++-|.+..+ ...++++|+ .+++|..+|+++....... . ....+ =+|..++. +..... ...
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~-----~-~~~~~-----~~iYv~GG-~~~~~~~~~~~ 82 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQA-----V-AAAID-----GKLYVFGG-IGKANSEGSPQ 82 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccc-----e-EEEEC-----CEEEEEeC-CCCCCCCCcce
Confidence 44566655543 356788885 6788999998773222211 1 11112 14555533 211110 001
Q ss_pred ccceEEEEEcCCCceEecc-CCCccccCCccee-EeCceEEEEecccCCC------------------------------
Q 036621 181 AFSLVAVYTLRTNSWKNLK-PIDYTMRLSSERT-YFDGAFYWLLKLENDN------------------------------ 228 (376)
Q Consensus 181 ~~~~~~vyss~t~~W~~~~-~~p~~~~~~~~~v-~~~G~lYwl~~~~~~~------------------------------ 228 (376)
....++.|+..+++|+.++ .+|..... ...+ .++|++|.+++.....
T Consensus 83 ~~~~v~~Yd~~~~~W~~~~~~~p~~~~~-~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T TIGR03547 83 VFDDVYRYDPKKNSWQKLDTRSPVGLLG-ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPP 161 (346)
T ss_pred ecccEEEEECCCCEEecCCCCCCCcccc-eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCCh
Confidence 1147899999999999987 33333222 2234 6899999998753110
Q ss_pred ----CceEEEEEEcCccceeee-cCCCCCCCCCceEEEEECCeEEEEEEecC--CCEEEEEEec--C--CceeeEEEEcc
Q 036621 229 ----DSYVILSFNMADEKFQEI-QGPCILESSLDVTLGIYYQSLSLLILDNV--DHCFKIWVMR--K--KNWIKQLTVGP 297 (376)
Q Consensus 229 ----~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~l~~~~G~L~~~~~~~~--~~~l~iW~l~--~--~~W~~~~~i~~ 297 (376)
....+.+||+.+++|+.+ ++|..... ...++..+|+|+++..... ....++|..+ . ..|+.+..| +
T Consensus 162 ~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m-~ 238 (346)
T TIGR03547 162 EDYFWNKNVLSYDPSTNQWRNLGENPFLGTA--GSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL-P 238 (346)
T ss_pred hHcCccceEEEEECCCCceeECccCCCCcCC--CceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC-C
Confidence 025799999999999998 56643221 3567788999999998421 2234455543 2 699998887 5
Q ss_pred CCce------eEeEEEeeCCcEEEEecC-----------------------CEEEEEECCCCCEEEEEE
Q 036621 298 FIGI------FQPLLFWKKGAFFVESNS-----------------------SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 298 ~~~~------~~~~~~~~~~~l~~~~~~-----------------------~~~~~yd~~~~~~~~v~~ 337 (376)
.+.. ....++..+++|++..+. ..+.+||+++++|+.+.-
T Consensus 239 ~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~ 307 (346)
T TIGR03547 239 PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK 307 (346)
T ss_pred CCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC
Confidence 5431 111233456788776542 146799999999998864
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=99.03 E-value=1.3e-08 Score=98.87 Aligned_cols=144 Identities=8% Similarity=0.048 Sum_probs=109.3
Q ss_pred ceEEEEEcCCCceEeccCCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeee-cCCCCCCCCCceEEE
Q 036621 183 SLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEI-QGPCILESSLDVTLG 261 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~l~ 261 (376)
..++.|+..++.|..+++|+..... ...+.++|.+|.+++... ...+..||+.+++|..+ ++|..+. ....+
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~---~~~~~ 359 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLY-ASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRC---NPAVA 359 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhc-ceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCc---ccEEE
Confidence 5789999999999999988874443 457889999999998642 34688999999999988 6665544 35678
Q ss_pred EECCeEEEEEEec-CCCEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCcEEEEecCCEEEEEECCCCCEEEEEE
Q 036621 262 IYYQSLSLLILDN-VDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 262 ~~~G~L~~~~~~~-~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~yd~~~~~~~~v~~ 337 (376)
+++|+|+++++.. ....++.+..+.+.|+.+..+ +.+... ..++..+|.||+.. +...+||+++++|+.+..
T Consensus 360 ~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m-~~~r~~-~~~~~~~~~IYv~G--G~~e~ydp~~~~W~~~~~ 432 (480)
T PHA02790 360 SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST-YYPHYK-SCALVFGRRLFLVG--RNAEFYCESSNTWTLIDD 432 (480)
T ss_pred EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC-CCcccc-ceEEEECCEEEEEC--CceEEecCCCCcEeEcCC
Confidence 8999999999842 234567776666999998777 554432 23345667888765 347789999999998863
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.01 E-value=2e-08 Score=99.43 Aligned_cols=194 Identities=13% Similarity=0.133 Sum_probs=127.3
Q ss_pred eEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEEEEcCCCceEecc
Q 036621 120 RITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNLK 199 (376)
Q Consensus 120 ~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (376)
.+.-+|+.+++|..++..+..... .+...+ -+++.++. +... ......++.|+..++.|..++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-----~~lyv~GG-~~~~---~~~~~~v~~yd~~~~~W~~~~ 327 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYCF--------GSVVLN-----NVIYFIGG-MNKN---NLSVNSVVSYDTKTKSWNKVP 327 (534)
T ss_pred eeeecchhhhhcccccCccccccc--------eEEEEC-----CEEEEECC-CcCC---CCeeccEEEEeCCCCeeeECC
Confidence 455678889999888765532110 111111 13444432 1111 111147899999999999998
Q ss_pred CCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeee-cCCCCCCCCCceEEEEECCeEEEEEEecCC--
Q 036621 200 PIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEI-QGPCILESSLDVTLGIYYQSLSLLILDNVD-- 276 (376)
Q Consensus 200 ~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~-- 276 (376)
.++..... ...+.++|.+|.+++.........+..||+.+.+|+.+ ++|.... ....+..+|+|+++++....
T Consensus 328 ~~~~~R~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~---~~~~~~~~~~iYv~GG~~~~~~ 403 (534)
T PHA03098 328 ELIYPRKN-PGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY---NPCVVNVNNLIYVIGGISKNDE 403 (534)
T ss_pred CCCccccc-ceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc---cceEEEECCEEEEECCcCCCCc
Confidence 88764444 56888999999999875322345789999999999988 6665543 35567889999999883211
Q ss_pred --CEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCcEEEEecC---------CEEEEEECCCCCEEEEE
Q 036621 277 --HCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNS---------SQLLLYEPGTGELRDFE 336 (376)
Q Consensus 277 --~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~yd~~~~~~~~v~ 336 (376)
..+..+-.+..+|+.+..+ |..... ..++..++.|++..+. ..+..||+++++|+++.
T Consensus 404 ~~~~v~~yd~~t~~W~~~~~~-p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 404 LLKTVECFSLNTNKWSKGSPL-PISHYG-GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred ccceEEEEeCCCCeeeecCCC-CccccC-ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 3344444444899998777 554432 2334456777776541 23899999999999885
No 17
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.93 E-value=5.2e-10 Score=71.65 Aligned_cols=43 Identities=30% Similarity=0.606 Sum_probs=36.8
Q ss_pred CCCCcHHHHHHHHccCCccccccccccchhhHhhcCChHHHHH
Q 036621 6 NDDSPEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISM 48 (376)
Q Consensus 6 ~~~LP~Dll~~IL~rLp~~~l~r~r~VcK~W~~lis~p~F~~~ 48 (376)
+..||+|++.+||+.|+++++.+++.|||+|+.++.++.+-+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 4689999999999999999999999999999999988755443
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.87 E-value=4.9e-07 Score=85.31 Aligned_cols=216 Identities=12% Similarity=0.113 Sum_probs=128.3
Q ss_pred cceeceEEEecC--CCeEEEEecC--cccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCC--C
Q 036621 106 GLYCGIVFIEGL--NNRITLWNIA--TRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDS--S 179 (376)
Q Consensus 106 ~s~~Gll~~~~~--~~~~~v~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~--~ 179 (376)
+..++-|.+..+ ...++++|+. +++|..+|+.+....... .....+ + +|..++. +...... .
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~------~~v~~~---~--~IYV~GG-~~~~~~~~~~ 102 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQA------VAAFID---G--KLYVFGG-IGKTNSEGSP 102 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccc------eEEEEC---C--EEEEEcC-CCCCCCCCce
Confidence 445666655443 3567888875 578999987653221111 111111 1 3444432 2110000 1
Q ss_pred cccceEEEEEcCCCceEeccC-CCccccCCcceeE-eCceEEEEecccCCC-----------------------------
Q 036621 180 CAFSLVAVYTLRTNSWKNLKP-IDYTMRLSSERTY-FDGAFYWLLKLENDN----------------------------- 228 (376)
Q Consensus 180 ~~~~~~~vyss~t~~W~~~~~-~p~~~~~~~~~v~-~~G~lYwl~~~~~~~----------------------------- 228 (376)
.....++.|+..++.|+.++. .|..... ..++. .+|.||.+++.....
T Consensus 103 ~~~~~v~~YD~~~n~W~~~~~~~p~~~~~-~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~ 181 (376)
T PRK14131 103 QVFDDVYKYDPKTNSWQKLDTRSPVGLAG-HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK 181 (376)
T ss_pred eEcccEEEEeCCCCEEEeCCCCCCCcccc-eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence 111478999999999999884 2332222 33444 799999998753100
Q ss_pred -----CceEEEEEEcCccceeee-cCCCCCCCCCceEEEEECCeEEEEEEec--CCCEEEEEEec--C--CceeeEEEEc
Q 036621 229 -----DSYVILSFNMADEKFQEI-QGPCILESSLDVTLGIYYQSLSLLILDN--VDHCFKIWVMR--K--KNWIKQLTVG 296 (376)
Q Consensus 229 -----~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~l~~~~G~L~~~~~~~--~~~~l~iW~l~--~--~~W~~~~~i~ 296 (376)
....+.+||+.+++|+.+ ++|..... ...++..+++|+++.... .....++|..+ . .+|+++..|
T Consensus 182 ~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~--~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~- 258 (376)
T PRK14131 182 PEDYFFNKEVLSYDPSTNQWKNAGESPFLGTA--GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL- 258 (376)
T ss_pred hhhcCcCceEEEEECCCCeeeECCcCCCCCCC--cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC-
Confidence 024799999999999998 56642221 345677899999999832 22345566543 2 899998887
Q ss_pred cCCce-------eEeEEEeeCCcEEEEecCC-----------------------EEEEEECCCCCEEEEEE
Q 036621 297 PFIGI-------FQPLLFWKKGAFFVESNSS-----------------------QLLLYEPGTGELRDFEL 337 (376)
Q Consensus 297 ~~~~~-------~~~~~~~~~~~l~~~~~~~-----------------------~~~~yd~~~~~~~~v~~ 337 (376)
|.... ....++..+++|++..+.. .+-+||+++++|+.+..
T Consensus 259 p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~ 329 (376)
T PRK14131 259 PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE 329 (376)
T ss_pred CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCc
Confidence 54321 1112334567777765411 24579999999998764
No 19
>PLN02153 epithiospecifier protein
Probab=98.84 E-value=4e-07 Score=84.83 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=97.7
Q ss_pred ceEEEEEcCCCceEeccCCCc---cccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeeec-C-----CCCCC
Q 036621 183 SLVAVYTLRTNSWKNLKPIDY---TMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQ-G-----PCILE 253 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~p~---~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~-~-----P~~~~ 253 (376)
..+++|+..++.|+..+.++. ........+.++|++|.+++.........+.+||+.+++|+.++ + |..+.
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART 129 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence 478999999999998875432 11111457889999999997643223357899999999999873 3 33322
Q ss_pred CCCceEEEEECCeEEEEEEecCCC------E-EEEEEec--CCceeeEEEEcc--CCceeEeEEEeeCCcEEEEec----
Q 036621 254 SSLDVTLGIYYQSLSLLILDNVDH------C-FKIWVMR--KKNWIKQLTVGP--FIGIFQPLLFWKKGAFFVESN---- 318 (376)
Q Consensus 254 ~~~~~~l~~~~G~L~~~~~~~~~~------~-l~iW~l~--~~~W~~~~~i~~--~~~~~~~~~~~~~~~l~~~~~---- 318 (376)
....+..+++|+++....... . -.++.++ ..+|+.+..+.. ...... ..+.-++++++..+
T Consensus 130 ---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~-~~~~~~~~iyv~GG~~~~ 205 (341)
T PLN02153 130 ---FHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA-GFAVVQGKIWVVYGFATS 205 (341)
T ss_pred ---eeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc-eEEEECCeEEEEeccccc
Confidence 355677899999998842111 1 1345544 489998765421 111111 12234566766432
Q ss_pred ----------CCEEEEEECCCCCEEEEEE
Q 036621 319 ----------SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 319 ----------~~~~~~yd~~~~~~~~v~~ 337 (376)
...+..||+++++|+++..
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEEeccc
Confidence 1358999999999999864
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.79 E-value=2.7e-06 Score=80.35 Aligned_cols=148 Identities=16% Similarity=0.103 Sum_probs=99.4
Q ss_pred ceEEEEEcCCCceEeccCCCc-cccCCcceeEeCceEEEEecccCC---CCceEEEEEEcCccceeee-cCCCCCCCC--
Q 036621 183 SLVAVYTLRTNSWKNLKPIDY-TMRLSSERTYFDGAFYWLLKLEND---NDSYVILSFNMADEKFQEI-QGPCILESS-- 255 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~p~-~~~~~~~~v~~~G~lYwl~~~~~~---~~~~~il~fD~~~~~~~~i-~~P~~~~~~-- 255 (376)
..+++|+..++.|+.++.+|. .... ...+.++|.||.+++.... ........||+++.+|+.+ ++|......
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~-~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~ 267 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAG-SAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQ 267 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCc-ceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcC
Confidence 478999999999999988876 3433 5578889999999975221 1233455678889999988 666543211
Q ss_pred ---CceEEEEECCeEEEEEEecCC--------------------CEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCc
Q 036621 256 ---LDVTLGIYYQSLSLLILDNVD--------------------HCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGA 312 (376)
Q Consensus 256 ---~~~~l~~~~G~L~~~~~~~~~--------------------~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ 312 (376)
.....++++|+|+++...... ..++++..+...|+.+..+ |.+.... .++.-+++
T Consensus 268 ~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l-p~~r~~~-~av~~~~~ 345 (376)
T PRK14131 268 EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL-PQGLAYG-VSVSWNNG 345 (376)
T ss_pred CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC-CCCccce-EEEEeCCE
Confidence 012246789999999873210 1245666666999988877 6655333 35556688
Q ss_pred EEEEecC-------CEEEEEECCCCCEE
Q 036621 313 FFVESNS-------SQLLLYEPGTGELR 333 (376)
Q Consensus 313 l~~~~~~-------~~~~~yd~~~~~~~ 333 (376)
||+..+. ..+..|+++++.+.
T Consensus 346 iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 346 VLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred EEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 8877652 14888888876654
No 21
>PLN02193 nitrile-specifier protein
Probab=98.79 E-value=1.2e-06 Score=85.07 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCceEeccC---CCcc-ccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeee-cC---CCCCCC
Q 036621 183 SLVAVYTLRTNSWKNLKP---IDYT-MRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEI-QG---PCILES 254 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~---~p~~-~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i-~~---P~~~~~ 254 (376)
..+++|+.++++|+.++. +|.. ... ...+.+++.||.+++.........+.+||+.+++|+.+ ++ |..+.
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~-~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~- 270 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLG-VRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS- 270 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccc-eEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCcc-
Confidence 468999999999998763 3322 222 45788999999999764322345789999999999998 44 33332
Q ss_pred CCceEEEEECCeEEEEEEecC---CCEEEEEEecCCceeeEEEEc--cCCceeEeEEEeeCCcEEEEec-C----CEEEE
Q 036621 255 SLDVTLGIYYQSLSLLILDNV---DHCFKIWVMRKKNWIKQLTVG--PFIGIFQPLLFWKKGAFFVESN-S----SQLLL 324 (376)
Q Consensus 255 ~~~~~l~~~~G~L~~~~~~~~---~~~l~iW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~~~l~~~~~-~----~~~~~ 324 (376)
...++..+++|+++..... ...+..+-+...+|+.+...+ +...... ..+..++++++..+ + ..+.+
T Consensus 271 --~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~~~gkiyviGG~~g~~~~dv~~ 347 (470)
T PLN02193 271 --FHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEVVQGKVWVVYGFNGCEVDDVHY 347 (470)
T ss_pred --ceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEEECCcEEEEECCCCCccCceEE
Confidence 3556678999999988421 123333434448999775421 1111112 22234567776644 1 45999
Q ss_pred EECCCCCEEEEEE
Q 036621 325 YEPGTGELRDFEL 337 (376)
Q Consensus 325 yd~~~~~~~~v~~ 337 (376)
||+++++|+++..
T Consensus 348 yD~~t~~W~~~~~ 360 (470)
T PLN02193 348 YDPVQDKWTQVET 360 (470)
T ss_pred EECCCCEEEEecc
Confidence 9999999999864
No 22
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.72 E-value=8.2e-09 Score=66.47 Aligned_cols=45 Identities=38% Similarity=0.596 Sum_probs=38.1
Q ss_pred CCCCcHHHHHHHHccCCccccccccccchhhHhhcCChHHHHHHH
Q 036621 6 NDDSPEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISMHL 50 (376)
Q Consensus 6 ~~~LP~Dll~~IL~rLp~~~l~r~r~VcK~W~~lis~p~F~~~~~ 50 (376)
+..||+|++.+||.+|+.+++.+++.|||+|+.++.++.+...+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 457999999999999999999999999999999999998876653
No 23
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.71 E-value=4.3e-09 Score=65.31 Aligned_cols=39 Identities=46% Similarity=0.772 Sum_probs=36.7
Q ss_pred CcHHHHHHHHccCCccccccccccchhhHhhcCChHHHH
Q 036621 9 SPEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFIS 47 (376)
Q Consensus 9 LP~Dll~~IL~rLp~~~l~r~r~VcK~W~~lis~p~F~~ 47 (376)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.69 E-value=7.2e-06 Score=76.59 Aligned_cols=133 Identities=13% Similarity=0.094 Sum_probs=88.8
Q ss_pred ceEEEEEcCCCceEeccCCCc-cccCCcceeEeCceEEEEecccCCC-CceEEEEE--EcCccceeee-cCCCCCCC---
Q 036621 183 SLVAVYTLRTNSWKNLKPIDY-TMRLSSERTYFDGAFYWLLKLENDN-DSYVILSF--NMADEKFQEI-QGPCILES--- 254 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~p~-~~~~~~~~v~~~G~lYwl~~~~~~~-~~~~il~f--D~~~~~~~~i-~~P~~~~~--- 254 (376)
..+++|+..+++|+.++.+|. .... ...+.++|+||.+++..... ....+..| |+++++|+.+ ++|.....
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~ 246 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAG-SAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE 246 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCC-ceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccc
Confidence 479999999999999998876 3333 55778899999998753211 12234445 4567799888 66543211
Q ss_pred C-CceEEEEECCeEEEEEEecC--------------------CCEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCcE
Q 036621 255 S-LDVTLGIYYQSLSLLILDNV--------------------DHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAF 313 (376)
Q Consensus 255 ~-~~~~l~~~~G~L~~~~~~~~--------------------~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~l 313 (376)
. .....++++|+|+++..... ...+++|..+.+.|+.+..+ |..... ..++.-++.|
T Consensus 247 ~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l-p~~~~~-~~~~~~~~~i 324 (346)
T TIGR03547 247 GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL-PQGLAY-GVSVSWNNGV 324 (346)
T ss_pred cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC-CCCcee-eEEEEcCCEE
Confidence 1 12335678999999988320 02567888877999999888 665432 2344456777
Q ss_pred EEEec
Q 036621 314 FVESN 318 (376)
Q Consensus 314 ~~~~~ 318 (376)
++..+
T Consensus 325 yv~GG 329 (346)
T TIGR03547 325 LLIGG 329 (346)
T ss_pred EEEec
Confidence 77654
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.62 E-value=2e-06 Score=79.51 Aligned_cols=139 Identities=12% Similarity=0.173 Sum_probs=95.4
Q ss_pred ceEeccCCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccce----eee-cCCCCCCCCCceEEEEECCeEE
Q 036621 194 SWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKF----QEI-QGPCILESSLDVTLGIYYQSLS 268 (376)
Q Consensus 194 ~W~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~----~~i-~~P~~~~~~~~~~l~~~~G~L~ 268 (376)
.|....++|..... ..++.+++.+|.+++.........+..||+.+++| ..+ ++|.... ....++.+|+|+
T Consensus 52 ~W~~~~~lp~~r~~-~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~---~~~~~~~~~~iY 127 (323)
T TIGR03548 52 KWVKDGQLPYEAAY-GASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFE---NGSACYKDGTLY 127 (323)
T ss_pred eEEEcccCCccccc-eEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCcc---CceEEEECCEEE
Confidence 69998888875444 45788899999999764322346789999999988 444 5555443 355678899999
Q ss_pred EEEEe-cCCCEEEEEEecC--CceeeEEEEccCCceeEeEEEeeCCcEEEEecC-----CEEEEEECCCCCEEEEEE
Q 036621 269 LLILD-NVDHCFKIWVMRK--KNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNS-----SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 269 ~~~~~-~~~~~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~yd~~~~~~~~v~~ 337 (376)
++... .....-++|+++- .+|+++..+ +...-....++..+++|++..+. ..+..||+++++|+++..
T Consensus 128 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 128 VGGGNRNGKPSNKSYLFNLETQEWFELPDF-PGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVAD 203 (323)
T ss_pred EEeCcCCCccCceEEEEcCCCCCeeECCCC-CCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCC
Confidence 99883 1112225566654 899998877 53222233444556788776542 237899999999998863
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.23 E-value=8.3e-05 Score=63.95 Aligned_cols=219 Identities=12% Similarity=0.093 Sum_probs=131.6
Q ss_pred ceeceEEEecCCCeEEEEecCcccceecCCCccCCC--Ccc-ccccceEE---EeeeCCCCCeEEEEEEEEecCCCCCCc
Q 036621 107 LYCGIVFIEGLNNRITLWNIATRESITLPKYRAIIP--QYT-RVFGTKIG---FGLDPKTKDYKVVLILTLWDEKRDSSC 180 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~v~NP~T~~~~~LP~~~~~~~--~~~-~~~~~~~~---~g~d~~~~~ykvv~~~~~~~~~~~~~~ 180 (376)
-|.|-.--..++-.+.+.|-.+=+|.++|+-..+.. ..+ ....+++| ..|+ =|+...+. +++.+...
T Consensus 32 YCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~-----d~~yvWGG--RND~egaC 104 (392)
T KOG4693|consen 32 YCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ-----DKAYVWGG--RNDDEGAC 104 (392)
T ss_pred cccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc-----ceEEEEcC--ccCccccc
Confidence 344544334456789999999999999998432211 110 00001111 1111 12333322 23334455
Q ss_pred ccceEEEEEcCCCceEecc---CCCccccCCcceeEeCceEEEEecccCCC--CceEEEEEEcCccceeee---cCCCCC
Q 036621 181 AFSLVAVYTLRTNSWKNLK---PIDYTMRLSSERTYFDGAFYWLLKLENDN--DSYVILSFNMADEKFQEI---QGPCIL 252 (376)
Q Consensus 181 ~~~~~~vyss~t~~W~~~~---~~p~~~~~~~~~v~~~G~lYwl~~~~~~~--~~~~il~fD~~~~~~~~i---~~P~~~ 252 (376)
....-|+.+++.|+..+ -+|..... +++++++..+|-.++..... -...+.++|+++.+|+.+ ..|+.-
T Consensus 105 --N~Ly~fDp~t~~W~~p~v~G~vPgaRDG-HsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw 181 (392)
T KOG4693|consen 105 --NLLYEFDPETNVWKKPEVEGFVPGARDG-HSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRW 181 (392)
T ss_pred --ceeeeeccccccccccceeeecCCccCC-ceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchh
Confidence 68889999999999876 33444444 77888899999998764321 245689999999999998 344433
Q ss_pred CCCCceEEEEECCeEEEEEEec------------CCCEEEEEEecCCceeeEEEEccCCce--eEeEEEeeCCcEEEEec
Q 036621 253 ESSLDVTLGIYYQSLSLLILDN------------VDHCFKIWVMRKKNWIKQLTVGPFIGI--FQPLLFWKKGAFFVESN 318 (376)
Q Consensus 253 ~~~~~~~l~~~~G~L~~~~~~~------------~~~~l~iW~l~~~~W~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~ 318 (376)
.+ ...-.+++|..+++.... ...+|...-++-+.|+.-..- +.... ..-..+.-++++++..+
T Consensus 182 RD--FH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~-~~~P~GRRSHS~fvYng~~Y~FGG 258 (392)
T KOG4693|consen 182 RD--FHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPEN-TMKPGGRRSHSTFVYNGKMYMFGG 258 (392)
T ss_pred hh--hhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCC-CcCCCcccccceEEEcceEEEecc
Confidence 32 444566788888888731 123444444444889876322 11111 22233345677766533
Q ss_pred -C-------CEEEEEECCCCCEEEEEEe
Q 036621 319 -S-------SQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 319 -~-------~~~~~yd~~~~~~~~v~~~ 338 (376)
. ..++.||++|..|..|...
T Consensus 259 Yng~ln~HfndLy~FdP~t~~W~~I~~~ 286 (392)
T KOG4693|consen 259 YNGTLNVHFNDLYCFDPKTSMWSVISVR 286 (392)
T ss_pred cchhhhhhhcceeecccccchheeeecc
Confidence 1 2499999999999999875
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.95 E-value=0.00042 Score=63.27 Aligned_cols=210 Identities=10% Similarity=0.113 Sum_probs=126.6
Q ss_pred CCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEE-EEEecCC-CCCCcccceEEEEEcCCCce
Q 036621 118 NNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLI-LTLWDEK-RDSSCAFSLVAVYTLRTNSW 195 (376)
Q Consensus 118 ~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~-~~~~~~~-~~~~~~~~~~~vyss~t~~W 195 (376)
.+.+|.+|.-+.+|+.+-.+....+.. .......++. ++.+ +..|.+. .+...+-..+++|++.++.|
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRs------shq~va~~s~----~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkw 166 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRS------SHQAVAVPSN----ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKW 166 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCc------cceeEEeccC----eEEEeccccCCcchhhhhhhhheeeeeeccchh
Confidence 467999999999999875544433222 1223333332 2222 1112111 11111114689999999999
Q ss_pred Eecc--CCCccccCCcceeEeCceEEEEecccCCC----CceEEEEEEcCccceeeecCCCCCCCC-CceEEEEE-CCeE
Q 036621 196 KNLK--PIDYTMRLSSERTYFDGAFYWLLKLENDN----DSYVILSFNMADEKFQEIQGPCILESS-LDVTLGIY-YQSL 267 (376)
Q Consensus 196 ~~~~--~~p~~~~~~~~~v~~~G~lYwl~~~~~~~----~~~~il~fD~~~~~~~~i~~P~~~~~~-~~~~l~~~-~G~L 267 (376)
..++ .-|..++. +..|.....|.-.++..... ..+-+.+||+++-+|+.+..+...... ...++.+. +|.+
T Consensus 167 eql~~~g~PS~RSG-HRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 167 EQLEFGGGPSPRSG-HRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGI 245 (521)
T ss_pred eeeccCCCCCCCcc-ceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcE
Confidence 9998 44554444 55666666666555432221 345689999999999999443321111 24566666 8888
Q ss_pred EEEEEec----------CCCEEEEEEecC-------CceeeEEEEc--cCCceeEeEEEeeCCc-EEEEe--c-------
Q 036621 268 SLLILDN----------VDHCFKIWVMRK-------KNWIKQLTVG--PFIGIFQPLLFWKKGA-FFVES--N------- 318 (376)
Q Consensus 268 ~~~~~~~----------~~~~l~iW~l~~-------~~W~~~~~i~--~~~~~~~~~~~~~~~~-l~~~~--~------- 318 (376)
++.++.+ +...-++|.|+. -.|+++..++ |-+....-++++.+++ ++|-. +
T Consensus 246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEs 325 (521)
T KOG1230|consen 246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEES 325 (521)
T ss_pred EEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchh
Confidence 8888732 344568999987 4688887664 2333344456666654 44421 1
Q ss_pred -----CCEEEEEECCCCCEEEEEEe
Q 036621 319 -----SSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 319 -----~~~~~~yd~~~~~~~~v~~~ 338 (376)
-..++.||+..++|.+-++.
T Consensus 326 l~g~F~NDLy~fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 326 LSGEFFNDLYFFDLTRNRWSEGQLQ 350 (521)
T ss_pred hhhhhhhhhhheecccchhhHhhhc
Confidence 11499999999999987764
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.92 E-value=0.00028 Score=60.76 Aligned_cols=133 Identities=12% Similarity=0.147 Sum_probs=91.7
Q ss_pred ceEEEEEcCCCceEecc--CCCccccCCcceeEeCceEEEEecccCCC---------CceEEEEEEcCccceeee----c
Q 036621 183 SLVAVYTLRTNSWKNLK--PIDYTMRLSSERTYFDGAFYWLLKLENDN---------DSYVILSFNMADEKFQEI----Q 247 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~--~~p~~~~~~~~~v~~~G~lYwl~~~~~~~---------~~~~il~fD~~~~~~~~i----~ 247 (376)
..+++++..|..|+.+. .-|..|++.+.++.++|.+|-.+++.+.. .-..|++||+.++.|..- .
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~ 236 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM 236 (392)
T ss_pred ccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCc
Confidence 57788899999999998 44444444477899999999999875421 345799999999999765 2
Q ss_pred CCCCCCCCCceEEEEECCeEEEEEEec---CCCEEEEEEecC--CceeeEEEEccCCce-eEeEEEeeCCcEEEEec
Q 036621 248 GPCILESSLDVTLGIYYQSLSLLILDN---VDHCFKIWVMRK--KNWIKQLTVGPFIGI-FQPLLFWKKGAFFVESN 318 (376)
Q Consensus 248 ~P~~~~~~~~~~l~~~~G~L~~~~~~~---~~~~l~iW~l~~--~~W~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~ 318 (376)
.|.++. .....+.+|+++++.... ....-++|..+- ..|+++..=+..+.. .+-.++-.++++++..+
T Consensus 237 ~P~GRR---SHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGG 310 (392)
T KOG4693|consen 237 KPGGRR---SHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGG 310 (392)
T ss_pred CCCccc---ccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecC
Confidence 344433 355678899999999842 133447888887 889998755433332 33344455567665543
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=6.4e-05 Score=66.06 Aligned_cols=40 Identities=35% Similarity=0.617 Sum_probs=36.8
Q ss_pred CCCCcHHHHHHHHccCCccccccccccchhhHhhcCChHH
Q 036621 6 NDDSPEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNF 45 (376)
Q Consensus 6 ~~~LP~Dll~~IL~rLp~~~l~r~r~VcK~W~~lis~p~F 45 (376)
+..||||+++.||+.|+.|+|.++..|||+|+++.++...
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 5789999999999999999999999999999999887554
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.19 E-value=0.022 Score=55.55 Aligned_cols=151 Identities=9% Similarity=0.048 Sum_probs=101.7
Q ss_pred eEEEEEcCCCceEecc---CCCccccCCcceeEeCceEEEEecccCC-CCceEEEEEEcCccceeeec----CCCCCCCC
Q 036621 184 LVAVYTLRTNSWKNLK---PIDYTMRLSSERTYFDGAFYWLLKLEND-NDSYVILSFNMADEKFQEIQ----GPCILESS 255 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~---~~p~~~~~~~~~v~~~G~lYwl~~~~~~-~~~~~il~fD~~~~~~~~i~----~P~~~~~~ 255 (376)
.+++++.++..|.... ..|..... ...+.++..||.+++.... .....+.+||+.+.+|..+. .|..+.
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g-~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~-- 165 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYG-HSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRA-- 165 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccc-eeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcc--
Confidence 5888888888897766 23333333 6688899999999987531 13458999999999999873 244433
Q ss_pred CceEEEEECCeEEEEEEecCC--CEEEEEEecC--CceeeEEEEccCCce-eEeEEEeeCCcEEEEec-C------CEEE
Q 036621 256 LDVTLGIYYQSLSLLILDNVD--HCFKIWVMRK--KNWIKQLTVGPFIGI-FQPLLFWKKGAFFVESN-S------SQLL 323 (376)
Q Consensus 256 ~~~~l~~~~G~L~~~~~~~~~--~~l~iW~l~~--~~W~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~-~------~~~~ 323 (376)
...++..+.+|++++..... ..-++|+++- ..|.++.+.++.+.- ....++..++++++..+ + ..+.
T Consensus 166 -~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~ 244 (482)
T KOG0379|consen 166 -GHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVH 244 (482)
T ss_pred -cceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceE
Confidence 45677778889888884322 3557788776 889999888643331 23333333444444332 2 1499
Q ss_pred EEECCCCCEEEEEEe
Q 036621 324 LYEPGTGELRDFELE 338 (376)
Q Consensus 324 ~yd~~~~~~~~v~~~ 338 (376)
.+|+.+.+|+++...
T Consensus 245 ~ldl~~~~W~~~~~~ 259 (482)
T KOG0379|consen 245 ILDLSTWEWKLLPTG 259 (482)
T ss_pred eeecccceeeecccc
Confidence 999999999966543
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.00 E-value=0.041 Score=53.71 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=100.7
Q ss_pred CeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEEEEcCCCceEec
Q 036621 119 NRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNL 198 (376)
Q Consensus 119 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
..+..+|+.|++|..+........... ...+... ++ |++.++. +.... ... ..++||+..+..|.++
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~-----~Hs~~~~---g~-~l~vfGG-~~~~~-~~~--ndl~i~d~~~~~W~~~ 205 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRA-----GHSATVV---GT-KLVVFGG-IGGTG-DSL--NDLHIYDLETSTWSEL 205 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcc-----cceEEEE---CC-EEEEECC-ccCcc-cce--eeeeeeccccccceec
Confidence 389999999999999876554211110 1111111 12 3333322 11111 123 7899999999999999
Q ss_pred cC---CCccccCCcceeEeCceEEEEeccc-CCCCceEEEEEEcCccceeee----cCCCCCCCCCceEEEEECCeEEEE
Q 036621 199 KP---IDYTMRLSSERTYFDGAFYWLLKLE-NDNDSYVILSFNMADEKFQEI----QGPCILESSLDVTLGIYYQSLSLL 270 (376)
Q Consensus 199 ~~---~p~~~~~~~~~v~~~G~lYwl~~~~-~~~~~~~il~fD~~~~~~~~i----~~P~~~~~~~~~~l~~~~G~L~~~ 270 (376)
.. .|..... +..+.+++.++.+.+.. ......-+..||+.+.+|..+ ..|..+. ...++..+..+.++
T Consensus 206 ~~~g~~P~pR~g-H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~---~h~~~~~~~~~~l~ 281 (482)
T KOG0379|consen 206 DTQGEAPSPRYG-HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRS---GHSLTVSGDHLLLF 281 (482)
T ss_pred ccCCCCCCCCCC-ceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcc---eeeeEEECCEEEEE
Confidence 82 2334444 66777777777777654 222466799999999999854 2333332 45556667778888
Q ss_pred EEecCC---CEEEEEEecC--CceeeEEEEc
Q 036621 271 ILDNVD---HCFKIWVMRK--KNWIKQLTVG 296 (376)
Q Consensus 271 ~~~~~~---~~l~iW~l~~--~~W~~~~~i~ 296 (376)
+..... .--++|.|+. ..|.++...+
T Consensus 282 gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 282 GGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cCCcccccccccccccccccccceeeeeccc
Confidence 885332 3457788777 8999988774
No 32
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.73 E-value=0.11 Score=48.06 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=94.2
Q ss_pred ceEEEEEcCCCceEeccCC--CccccCCcceeEeC-ceEEEEecccCCC------CceEEEEEEcCccceeeecCCCCCC
Q 036621 183 SLVAVYTLRTNSWKNLKPI--DYTMRLSSERTYFD-GAFYWLLKLENDN------DSYVILSFNMADEKFQEIQGPCILE 253 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~--p~~~~~~~~~v~~~-G~lYwl~~~~~~~------~~~~il~fD~~~~~~~~i~~P~~~~ 253 (376)
....+|+-+.+.|+.+... |..+.. +.+|.+- |.+|..++....+ ...-+-.||+.+.+|..+.++....
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRss-hq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS 176 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSS-HQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS 176 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCcc-ceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence 3567899999999999832 223333 4455555 7666666544332 2345789999999999997766544
Q ss_pred CCCceEEEEECCeEEEEEE-ec------CCCEEEEEEecCCceeeEEEEc--cCCceeEeEEEeeCCcEEEEec------
Q 036621 254 SSLDVTLGIYYQSLSLLIL-DN------VDHCFKIWVMRKKNWIKQLTVG--PFIGIFQPLLFWKKGAFFVESN------ 318 (376)
Q Consensus 254 ~~~~~~l~~~~G~L~~~~~-~~------~~~~l~iW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~~~l~~~~~------ 318 (376)
......++..+.+|.++++ ++ ...-+.++-|+...|+++..-+ |.+...+-+.+..+|.|++..+
T Consensus 177 ~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~ 256 (521)
T KOG1230|consen 177 PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRV 256 (521)
T ss_pred CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhh
Confidence 3345778888999888888 32 1223344445559999987533 4444344455566777777543
Q ss_pred ---------CCEEEEEECCC
Q 036621 319 ---------SSQLLLYEPGT 329 (376)
Q Consensus 319 ---------~~~~~~yd~~~ 329 (376)
...++..++++
T Consensus 257 kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 257 KKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred hhhhhcCceeeeeeeecCCc
Confidence 11388888887
No 33
>PF13964 Kelch_6: Kelch motif
Probab=96.61 E-value=0.006 Score=39.15 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=34.9
Q ss_pred cceeEeCceEEEEecccC-CCCceEEEEEEcCccceeee-cCCC
Q 036621 209 SERTYFDGAFYWLLKLEN-DNDSYVILSFNMADEKFQEI-QGPC 250 (376)
Q Consensus 209 ~~~v~~~G~lYwl~~~~~-~~~~~~il~fD~~~~~~~~i-~~P~ 250 (376)
.+.+.++|.||.+++... ......+..||+.+++|+.+ ++|.
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 568999999999998865 33567899999999999999 5553
No 34
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.35 E-value=0.0014 Score=58.07 Aligned_cols=44 Identities=23% Similarity=0.539 Sum_probs=39.0
Q ss_pred CCCCcHHHHHHHHccCC-----ccccccccccchhhHhhcCChHHHHHH
Q 036621 6 NDDSPEDITIEILSRLP-----VKSLIRLRCVCKSWYALIKDPNFISMH 49 (376)
Q Consensus 6 ~~~LP~Dll~~IL~rLp-----~~~l~r~r~VcK~W~~lis~p~F~~~~ 49 (376)
+..||||+|.+||.++= ..+|.++.+|||.|+-...+|.|.+.-
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 46899999999998765 489999999999999999999997764
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.18 E-value=0.0022 Score=57.27 Aligned_cols=43 Identities=30% Similarity=0.428 Sum_probs=39.3
Q ss_pred CCCc----HHHHHHHHccCCccccccccccchhhHhhcCChHHHHHH
Q 036621 7 DDSP----EDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISMH 49 (376)
Q Consensus 7 ~~LP----~Dll~~IL~rLp~~~l~r~r~VcK~W~~lis~p~F~~~~ 49 (376)
..|| +++.+.||+.|...+|..|..|||+|+++++++-.-++.
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 4689 999999999999999999999999999999999876654
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=95.86 E-value=0.023 Score=35.69 Aligned_cols=41 Identities=7% Similarity=0.221 Sum_probs=34.5
Q ss_pred cceeEeCceEEEEecccC-CCCceEEEEEEcCccceeee-cCC
Q 036621 209 SERTYFDGAFYWLLKLEN-DNDSYVILSFNMADEKFQEI-QGP 249 (376)
Q Consensus 209 ~~~v~~~G~lYwl~~~~~-~~~~~~il~fD~~~~~~~~i-~~P 249 (376)
...+.++|.+|.+++... ......+..||+.+++|..+ ++|
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 568999999999998765 34678999999999999988 544
No 37
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.40 E-value=0.8 Score=40.46 Aligned_cols=128 Identities=12% Similarity=0.215 Sum_probs=84.9
Q ss_pred CCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCcccee-eecCCCCCCCC---------CceEEEEECCeEEE
Q 036621 200 PIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQ-EIQGPCILESS---------LDVTLGIYYQSLSL 269 (376)
Q Consensus 200 ~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~---------~~~~l~~~~G~L~~ 269 (376)
.+|..+.. ...|+.||.+|+-... ...|+.||+.+++-. ...+|...... ..+.+++-+..|-+
T Consensus 64 ~Lp~~~~G-tG~vVYngslYY~~~~-----s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWv 137 (250)
T PF02191_consen 64 KLPYPWQG-TGHVVYNGSLYYNKYN-----SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWV 137 (250)
T ss_pred EEeceecc-CCeEEECCcEEEEecC-----CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEE
Confidence 45555555 6688899999999874 669999999999988 77887765442 14667777777888
Q ss_pred EEEecC-CCEEEEEEecC------CceeeEEEEccCCceeEeEEEeeCCcEEEEecC-----CEEEEEECCCCCEEEEEE
Q 036621 270 LILDNV-DHCFKIWVMRK------KNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNS-----SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 270 ~~~~~~-~~~l~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~yd~~~~~~~~v~~ 337 (376)
+-.... ...+.|=+|+. +.|.-- + +.... --++--+|.++..... .-.++||..+++-+.+.+
T Consensus 138 IYat~~~~g~ivvskld~~tL~v~~tw~T~--~-~k~~~--~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 138 IYATEDNNGNIVVSKLDPETLSVEQTWNTS--Y-PKRSA--GNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred EEecCCCCCcEEEEeeCcccCceEEEEEec--c-Cchhh--cceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceee
Confidence 877432 34688888876 556532 2 21111 1233334556555432 247899999998887776
Q ss_pred e
Q 036621 338 E 338 (376)
Q Consensus 338 ~ 338 (376)
.
T Consensus 213 ~ 213 (250)
T PF02191_consen 213 P 213 (250)
T ss_pred e
Confidence 5
No 38
>smart00284 OLF Olfactomedin-like domains.
Probab=95.08 E-value=0.94 Score=39.88 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=83.5
Q ss_pred CCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeee-cCCCCCCC---------CCceEEEEECCeEEE
Q 036621 200 PIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEI-QGPCILES---------SLDVTLGIYYQSLSL 269 (376)
Q Consensus 200 ~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~---------~~~~~l~~~~G~L~~ 269 (376)
.+|..+.. ...|+.||.+|+.... ...|+.||+.+++.... .+|...-. ...+.|++-+..|-+
T Consensus 69 ~Lp~~~~G-tG~VVYngslYY~~~~-----s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWv 142 (255)
T smart00284 69 PLPHAGQG-TGVVVYNGSLYFNKFN-----SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWV 142 (255)
T ss_pred ECCCcccc-ccEEEECceEEEEecC-----CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEE
Confidence 46665555 6699999999997654 56899999999998644 56653211 125778888888888
Q ss_pred EEEe-cCCCEEEEEEecC------CceeeEEEEccCCceeEeEEEeeCCcEEEEec-----CCEEEEEECCCCCEEEEEE
Q 036621 270 LILD-NVDHCFKIWVMRK------KNWIKQLTVGPFIGIFQPLLFWKKGAFFVESN-----SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 270 ~~~~-~~~~~l~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~yd~~~~~~~~v~~ 337 (376)
+-.. .....|.|=+|+. +.|..-+ +.... --++--+|.++.... .+-.++||..|++-+.+.+
T Consensus 143 IYat~~~~g~ivvSkLnp~tL~ve~tW~T~~---~k~sa--~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 143 IYATEQNAGKIVISKLNPATLTIENTWITTY---NKRSA--SNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred EEeccCCCCCEEEEeeCcccceEEEEEEcCC---Ccccc--cccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 8773 2357788888887 5666522 22211 122233455655542 2348899999988776666
Q ss_pred e
Q 036621 338 E 338 (376)
Q Consensus 338 ~ 338 (376)
.
T Consensus 218 ~ 218 (255)
T smart00284 218 P 218 (255)
T ss_pred e
Confidence 4
No 39
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.07 E-value=2.2 Score=37.46 Aligned_cols=196 Identities=14% Similarity=0.077 Sum_probs=109.2
Q ss_pred eceEEEec-CCCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEE
Q 036621 109 CGIVFIEG-LNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAV 187 (376)
Q Consensus 109 ~Gll~~~~-~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
+|.|.+.+ ...+++.++|.+++...+..+. ..|+.++...+.+ +++. . ....+
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~l-~v~~-----~--------~~~~~ 64 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG------------PNGMAFDRPDGRL-YVAD-----S--------GGIAV 64 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS------------EEEEEEECTTSEE-EEEE-----T--------TCEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC------------CceEEEEccCCEE-EEEE-----c--------CceEE
Confidence 55555555 5788999999999876644333 2466666333332 2221 1 35566
Q ss_pred EEcCCCceEeccCCC-----ccccCCcceeEeCceEEEEecccCCC-Cc--eEEEEEEcCccceeeecCCCCCCCCCceE
Q 036621 188 YTLRTNSWKNLKPID-----YTMRLSSERTYFDGAFYWLLKLENDN-DS--YVILSFNMADEKFQEIQGPCILESSLDVT 259 (376)
Q Consensus 188 yss~t~~W~~~~~~p-----~~~~~~~~~v~~~G~lYwl~~~~~~~-~~--~~il~fD~~~~~~~~i~~P~~~~~~~~~~ 259 (376)
++..++.++.+...+ ....+ .-.+--+|.+|+-....... .. ..|..+|.. .+...+.- ... ....
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~--~pNG 138 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLG--FPNG 138 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EES--SEEE
T ss_pred EecCCCcEEEEeeccCCCcccCCCc-eEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccc--cccc
Confidence 688888888877442 12222 33555588987766543211 12 689999999 55444411 111 1233
Q ss_pred EEEE-CCe-EEEEEEecCCCEEEEEEecC--CceeeEEEEccCCc---eeEeEEEeeCCcEEEEec-CCEEEEEECCCCC
Q 036621 260 LGIY-YQS-LSLLILDNVDHCFKIWVMRK--KNWIKQLTVGPFIG---IFQPLLFWKKGAFFVESN-SSQLLLYEPGTGE 331 (376)
Q Consensus 260 l~~~-~G~-L~~~~~~~~~~~l~iW~l~~--~~W~~~~~i~~~~~---~~~~~~~~~~~~l~~~~~-~~~~~~yd~~~~~ 331 (376)
|+.. +|+ |++.... ...+..+.++. ..+.....+-.... ...-+++..+|.|++... .+++.+||++.+.
T Consensus 139 i~~s~dg~~lyv~ds~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~ 216 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSF--NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKL 216 (246)
T ss_dssp EEEETTSSEEEEEETT--TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCE
T ss_pred eEECCcchheeecccc--cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccE
Confidence 4444 565 5554443 44444444443 33554332212222 234466677888877654 6889999999777
Q ss_pred EEEEEEe
Q 036621 332 LRDFELE 338 (376)
Q Consensus 332 ~~~v~~~ 338 (376)
.+++...
T Consensus 217 ~~~i~~p 223 (246)
T PF08450_consen 217 LREIELP 223 (246)
T ss_dssp EEEEE-S
T ss_pred EEEEcCC
Confidence 8878775
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=94.56 E-value=0.1 Score=33.12 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=32.3
Q ss_pred cceeEeCceEEEEecc---cCCCCceEEEEEEcCccceeeec
Q 036621 209 SERTYFDGAFYWLLKL---ENDNDSYVILSFNMADEKFQEIQ 247 (376)
Q Consensus 209 ~~~v~~~G~lYwl~~~---~~~~~~~~il~fD~~~~~~~~i~ 247 (376)
..++.++|++|.+++. ........+..||+++.+|+.++
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 5688999999999988 22235778999999999999884
No 41
>smart00612 Kelch Kelch domain.
Probab=93.56 E-value=0.18 Score=31.23 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCceEeccCCCccccCCcceeEeCc
Q 036621 183 SLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDG 216 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~p~~~~~~~~~v~~~G 216 (376)
..+++|+.+++.|+..++|+..... ...+.++|
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~~~g 47 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPTPRSG-HGVAVING 47 (47)
T ss_pred eeEEEECCCCCeEccCCCCCCcccc-ceEEEeCC
Confidence 6789999999999999888774433 33555544
No 42
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.26 E-value=9.5 Score=36.13 Aligned_cols=143 Identities=8% Similarity=0.168 Sum_probs=81.7
Q ss_pred ceEEEEEcCCCceEeccCCCc-cccCCcceeEeCce-EEEEecccCCCCceEEEEEEcCccceeeecCCCCCCCCCceEE
Q 036621 183 SLVAVYTLRTNSWKNLKPIDY-TMRLSSERTYFDGA-FYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTL 260 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~p~-~~~~~~~~v~~~G~-lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~l 260 (376)
..+.+|......=..+..+-. .++-....+.-+|. .-...++ ...+.+||+.+.+...+..|...........
T Consensus 235 ~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~k~~~~~g~e~~~~e~F 309 (514)
T KOG2055|consen 235 GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVTKLKPPYGVEEKSMERF 309 (514)
T ss_pred CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeeccccccccccCCCCcccchhhee
Confidence 356677765443333332211 11111234444676 4444444 6699999999999999988887764322222
Q ss_pred EEE-CCeEEEEEEecCCCEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCc-EEEEecCCEEEEEECCCCCEEEE
Q 036621 261 GIY-YQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 261 ~~~-~G~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~yd~~~~~~~~v 335 (376)
.+. +|...++.+. ...|.+--.+-.+|.--..| .....-+++..+++ |+....++.++++|++++.....
T Consensus 310 eVShd~~fia~~G~--~G~I~lLhakT~eli~s~Ki---eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 310 EVSHDSNFIAIAGN--NGHIHLLHAKTKELITSFKI---EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred EecCCCCeEEEccc--CceEEeehhhhhhhhheeee---ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 222 4443333333 44555544444677666655 33344566667776 45555678999999999865443
No 43
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=91.44 E-value=7.8 Score=36.09 Aligned_cols=149 Identities=14% Similarity=0.169 Sum_probs=83.4
Q ss_pred eeceEEEecCCCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCc-ccceEE
Q 036621 108 YCGIVFIEGLNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSC-AFSLVA 186 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~-~~~~~~ 186 (376)
.+.-|+.........|+|+.|+....+|.......... .+..| ++ +..+.. ......... ....+|
T Consensus 75 ~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~~pi-----sv~VG-----~~--LY~m~~-~~~~~~~~~~~~~~FE 141 (342)
T PF07893_consen 75 HGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKRCPI-----SVSVG-----DK--LYAMDR-SPFPEPAGRPDFPCFE 141 (342)
T ss_pred cCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCcceE-----EEEeC-----Ce--EEEeec-cCccccccCccceeEE
Confidence 45555555555779999999999999998765433321 12221 11 333322 111100000 001344
Q ss_pred EE--E--------cCCCceEeccCCCccc-c------CCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeee---
Q 036621 187 VY--T--------LRTNSWKNLKPIDYTM-R------LSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEI--- 246 (376)
Q Consensus 187 vy--s--------s~t~~W~~~~~~p~~~-~------~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i--- 246 (376)
++ . .++.+|+.+++.|+.. . -...+|+ +|.--|+...+. ...-.+||..+.+|+..
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~---~~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR---RWGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred EeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCC---ceEEEEEEcCCcceeeccce
Confidence 44 3 2345788887655511 1 1144666 898888865421 23689999999999987
Q ss_pred cCCCCCCCCC----ceEEEEE--C--CeEEEEEEe
Q 036621 247 QGPCILESSL----DVTLGIY--Y--QSLSLLILD 273 (376)
Q Consensus 247 ~~P~~~~~~~----~~~l~~~--~--G~L~~~~~~ 273 (376)
.||..-...+ ...++.+ + |.||.+...
T Consensus 218 ~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~ 252 (342)
T PF07893_consen 218 MLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVS 252 (342)
T ss_pred ecCcCCccEECCCcCeEEEeccCCCCcEEEEEecc
Confidence 7887654332 3444443 3 367776663
No 44
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.21 E-value=7.3 Score=34.60 Aligned_cols=124 Identities=17% Similarity=0.181 Sum_probs=80.7
Q ss_pred ccccceeceEEEec-CCCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcc
Q 036621 103 SFKGLYCGIVFIEG-LNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCA 181 (376)
Q Consensus 103 ~~~~s~~Gll~~~~-~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~ 181 (376)
.+++.-+|-|-+.. ..+-+...||.++.--.+|.|....... -....|+.. -+.+.+ +..
T Consensus 193 Gi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gs-------Rriwsdpig----~~witt-wg~------- 253 (353)
T COG4257 193 GICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGS-------RRIWSDPIG----RAWITT-WGT------- 253 (353)
T ss_pred ceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccc-------cccccCccC----cEEEec-cCC-------
Confidence 46666788887665 3466888999999888888887632222 133334321 122211 111
Q ss_pred cceEEEEEcCCCceEeccCCCc--cccCCcceeEeCc-eEEEEecccCCCCceEEEEEEcCccceeeecCCCCCCC
Q 036621 182 FSLVAVYTLRTNSWKNLKPIDY--TMRLSSERTYFDG-AFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILES 254 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~p~--~~~~~~~~v~~~G-~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~ 254 (376)
-.+.-|+..+.+|.+-. +|. .... +.++|. -.-|+..- ..+.|..||+++++|+++++|.....
T Consensus 254 -g~l~rfdPs~~sW~eyp-LPgs~arpy---s~rVD~~grVW~sea----~agai~rfdpeta~ftv~p~pr~n~g 320 (353)
T COG4257 254 -GSLHRFDPSVTSWIEYP-LPGSKARPY---SMRVDRHGRVWLSEA----DAGAIGRFDPETARFTVLPIPRPNSG 320 (353)
T ss_pred -ceeeEeCcccccceeee-CCCCCCCcc---eeeeccCCcEEeecc----ccCceeecCcccceEEEecCCCCCCC
Confidence 47888999998998875 333 2222 444443 34577655 47799999999999999998887654
No 45
>PF13964 Kelch_6: Kelch motif
Probab=90.95 E-value=0.45 Score=30.21 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=24.8
Q ss_pred ceeceEEEecC-------CCeEEEEecCcccceecCCCcc
Q 036621 107 LYCGIVFIEGL-------NNRITLWNIATRESITLPKYRA 139 (376)
Q Consensus 107 s~~Gll~~~~~-------~~~~~v~NP~T~~~~~LP~~~~ 139 (376)
+.+|-|.+..+ .+.+.++||.|++|..+|+++.
T Consensus 9 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 9 VVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred EECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 34555555442 3679999999999999998875
No 46
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=90.59 E-value=0.36 Score=30.48 Aligned_cols=41 Identities=10% Similarity=0.223 Sum_probs=24.7
Q ss_pred cceeEe-CceEEEEecccCC-CCceEEEEEEcCccceeee-cCC
Q 036621 209 SERTYF-DGAFYWLLKLEND-NDSYVILSFNMADEKFQEI-QGP 249 (376)
Q Consensus 209 ~~~v~~-~G~lYwl~~~~~~-~~~~~il~fD~~~~~~~~i-~~P 249 (376)
+.++.+ +|.+|..++.... .....+..||+.+++|+.+ ++|
T Consensus 5 h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 5 HSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred EEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 446666 5899998876432 2345789999999999998 444
No 47
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=90.35 E-value=9.2 Score=33.13 Aligned_cols=116 Identities=9% Similarity=0.098 Sum_probs=69.1
Q ss_pred EeCceEEEEecccCCCCceEEEEEEcCccceeeecCCCCC---CCCCceEEEEE--CC--eEEEEEEe---cCCCEEEEE
Q 036621 213 YFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCIL---ESSLDVTLGIY--YQ--SLSLLILD---NVDHCFKIW 282 (376)
Q Consensus 213 ~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~---~~~~~~~l~~~--~G--~L~~~~~~---~~~~~l~iW 282 (376)
.+||.+. +.. ...+.++|+.++++..+|.|... .......++-. .+ |+..+... .....++|+
T Consensus 3 sCnGLlc-~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vy 75 (230)
T TIGR01640 3 PCDGLIC-FSY------GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVY 75 (230)
T ss_pred ccceEEE-Eec------CCcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEE
Confidence 4688883 332 24799999999999999766542 11111222221 12 22222221 124578899
Q ss_pred EecCCceeeEEEEccCCce-eEeEEEeeCCcEEEEecC------CEEEEEECCCCCEEE-EEE
Q 036621 283 VMRKKNWIKQLTVGPFIGI-FQPLLFWKKGAFFVESNS------SQLLLYEPGTGELRD-FEL 337 (376)
Q Consensus 283 ~l~~~~W~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~------~~~~~yd~~~~~~~~-v~~ 337 (376)
.++..+|..+... +.... ... ++.-+|.++..... ..++.||+++.++++ +..
T Consensus 76 s~~~~~Wr~~~~~-~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~ 136 (230)
T TIGR01640 76 TLGSNSWRTIECS-PPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPL 136 (230)
T ss_pred EeCCCCccccccC-CCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeec
Confidence 9988999998743 22111 222 55567777665431 169999999999995 543
No 48
>smart00612 Kelch Kelch domain.
Probab=89.92 E-value=1.1 Score=27.48 Aligned_cols=36 Identities=8% Similarity=0.153 Sum_probs=23.5
Q ss_pred EEEEecccCCCCceEEEEEEcCccceeee-cCCCCCC
Q 036621 218 FYWLLKLENDNDSYVILSFNMADEKFQEI-QGPCILE 253 (376)
Q Consensus 218 lYwl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~ 253 (376)
+|.+++.........+..||+.+.+|+.+ ++|....
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~ 38 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRS 38 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccc
Confidence 45555442211345789999999999988 5555443
No 49
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=89.14 E-value=25 Score=34.92 Aligned_cols=43 Identities=28% Similarity=0.514 Sum_probs=38.4
Q ss_pred CCCCcHHHHHHHHccCCccccccccccchhhHhhcCChHHHHH
Q 036621 6 NDDSPEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISM 48 (376)
Q Consensus 6 ~~~LP~Dll~~IL~rLp~~~l~r~r~VcK~W~~lis~p~F~~~ 48 (376)
+..||.++...||..|+.+++++++.||+.|+.++.+-....+
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~ 150 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR 150 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence 4679999999999999999999999999999999987666553
No 50
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=88.84 E-value=3.6 Score=32.26 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=50.9
Q ss_pred eEEEEEEcCcc--ceeeecCCCCCCCC-----------CceEEEEECCeEEEEEEec--------CCCEEEEEEecC---
Q 036621 231 YVILSFNMADE--KFQEIQGPCILESS-----------LDVTLGIYYQSLSLLILDN--------VDHCFKIWVMRK--- 286 (376)
Q Consensus 231 ~~il~fD~~~~--~~~~i~~P~~~~~~-----------~~~~l~~~~G~L~~~~~~~--------~~~~l~iW~l~~--- 286 (376)
..|+..|+..+ .++-++||...... ....+++.+|+|-++.... ....+.+|.|..
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 36888998765 56667888765322 2456788899999988832 356799999887
Q ss_pred --CceeeEEEEccCCc
Q 036621 287 --KNWIKQLTVGPFIG 300 (376)
Q Consensus 287 --~~W~~~~~i~~~~~ 300 (376)
.+|.+-+++ +...
T Consensus 86 ~~~~W~~d~~v-~~~d 100 (131)
T PF07762_consen 86 SSWEWKKDCEV-DLSD 100 (131)
T ss_pred CCCCEEEeEEE-Ehhh
Confidence 789999988 5544
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.78 E-value=0.16 Score=47.32 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=34.5
Q ss_pred CCCcHHHHHHHHccCCccccccccccchhhHhhcCCh
Q 036621 7 DDSPEDITIEILSRLPVKSLIRLRCVCKSWYALIKDP 43 (376)
Q Consensus 7 ~~LP~Dll~~IL~rLp~~~l~r~r~VcK~W~~lis~p 43 (376)
-.||.|++.+||+-|..+++.|++.+|+.|+.+..|.
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 4799999999999999999999999999999988763
No 52
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.17 E-value=10 Score=36.55 Aligned_cols=201 Identities=18% Similarity=0.197 Sum_probs=97.3
Q ss_pred CeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEEEEcCCCc--eE
Q 036621 119 NRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNS--WK 196 (376)
Q Consensus 119 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~--W~ 196 (376)
.++.++|..|+||.. |....+-.... +++||.+|. =+++.++. . .+.+. +.=+.|.+.... |+
T Consensus 57 DELHvYNTatnqWf~-PavrGDiPpgc----AA~GfvcdG----trilvFGG-M---vEYGk--YsNdLYELQasRWeWk 121 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDIPPGC----AAFGFVCDG----TRILVFGG-M---VEYGK--YSNDLYELQASRWEWK 121 (830)
T ss_pred hhhhhhccccceeec-chhcCCCCCch----hhcceEecC----ceEEEEcc-E---eeecc--ccchHHHhhhhhhhHh
Confidence 579999999999974 43332222221 245666663 24444421 1 11222 455667777655 55
Q ss_pred eccC-CC-----c-cccCCcceeEeCceEEEEecccCCC-----------CceEEEEEEcCcc--ceeee----cCCCCC
Q 036621 197 NLKP-ID-----Y-TMRLSSERTYFDGAFYWLLKLENDN-----------DSYVILSFNMADE--KFQEI----QGPCIL 252 (376)
Q Consensus 197 ~~~~-~p-----~-~~~~~~~~v~~~G~lYwl~~~~~~~-----------~~~~il~fD~~~~--~~~~i----~~P~~~ 252 (376)
.+.+ .| . .+-. ++-+.++.+.|.+++-.++. +..+++-+-.... -|... .+|..+
T Consensus 122 rlkp~~p~nG~pPCPRlG-HSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pR 200 (830)
T KOG4152|consen 122 RLKPKTPKNGPPPCPRLG-HSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPR 200 (830)
T ss_pred hcCCCCCCCCCCCCCccC-ceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCc
Confidence 5551 11 1 2222 44556667888888642211 2223333332332 23221 455554
Q ss_pred CCCCceEEEEECC---eEEEEEEecCCCEEEEEEecC--CceeeEEEEc--cCCce-eEeEEEeeCCcEEEEe-------
Q 036621 253 ESSLDVTLGIYYQ---SLSLLILDNVDHCFKIWVMRK--KNWIKQLTVG--PFIGI-FQPLLFWKKGAFFVES------- 317 (376)
Q Consensus 253 ~~~~~~~l~~~~G---~L~~~~~~~~~~~l~iW~l~~--~~W~~~~~i~--~~~~~-~~~~~~~~~~~l~~~~------- 317 (376)
..+....-.+-|. ++++...-.+..-=++|.|+- ..|++...-+ |++.. ....-+ +++.|+..
T Consensus 201 ESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~I--GnKMyvfGGWVPl~~ 278 (830)
T KOG4152|consen 201 ESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTI--GNKMYVFGGWVPLVM 278 (830)
T ss_pred ccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceee--cceeEEecceeeeec
Confidence 4421111112222 344444432233447899987 8999864322 44432 111111 12222110
Q ss_pred -------c------CCEEEEEECCCCCEEEEEE
Q 036621 318 -------N------SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 318 -------~------~~~~~~yd~~~~~~~~v~~ 337 (376)
. ...+-+.|+.+..|+.+..
T Consensus 279 ~~~~~~~hekEWkCTssl~clNldt~~W~tl~~ 311 (830)
T KOG4152|consen 279 DDVKVATHEKEWKCTSSLACLNLDTMAWETLLM 311 (830)
T ss_pred cccccccccceeeeccceeeeeecchheeeeee
Confidence 0 1237888999999998865
No 53
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.95 E-value=19 Score=32.00 Aligned_cols=142 Identities=12% Similarity=0.089 Sum_probs=79.2
Q ss_pred CCCCCCcccceEEEEEcCCCceEeccCCCc-cccCCcceeEeCceEEEEecccCCCCceEEEEEEcCcc-ceeeecCCCC
Q 036621 174 EKRDSSCAFSLVAVYTLRTNSWKNLKPIDY-TMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADE-KFQEIQGPCI 251 (376)
Q Consensus 174 ~~~~~~~~~~~~~vyss~t~~W~~~~~~p~-~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~-~~~~i~~P~~ 251 (376)
+.+..++ ..+..|++.++.=.....+|. .|. .....+++.+|-+.-. ....+.||..+- .-..++.|.
T Consensus 61 STG~yG~--S~l~~~d~~tg~~~~~~~l~~~~Fg--EGit~~~d~l~qLTWk-----~~~~f~yd~~tl~~~~~~~y~~- 130 (264)
T PF05096_consen 61 STGLYGQ--SSLRKVDLETGKVLQSVPLPPRYFG--EGITILGDKLYQLTWK-----EGTGFVYDPNTLKKIGTFPYPG- 130 (264)
T ss_dssp EECSTTE--EEEEEEETTTSSEEEEEE-TTT--E--EEEEEETTEEEEEESS-----SSEEEEEETTTTEEEEEEE-SS-
T ss_pred eCCCCCc--EEEEEEECCCCcEEEEEECCccccc--eeEEEECCEEEEEEec-----CCeEEEEccccceEEEEEecCC-
Confidence 3444555 789999999987555556666 555 3467789999999976 568899999752 223334442
Q ss_pred CCCCCceEEEEECCeEEEEEEecCCCEEEEEEecCCceeeEEEEccCCceeEeEEEe-----eCCcEEEEec-CCEEEEE
Q 036621 252 LESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFW-----KKGAFFVESN-SSQLLLY 325 (376)
Q Consensus 252 ~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~-----~~~~l~~~~~-~~~~~~y 325 (376)
+ ...|+.-+..|.+..++ . .|+.++-+....+.+| .......|+... -+|.|+--.. ...++..
T Consensus 131 --E--GWGLt~dg~~Li~SDGS---~--~L~~~dP~~f~~~~~i-~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 131 --E--GWGLTSDGKRLIMSDGS---S--RLYFLDPETFKEVRTI-QVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRI 200 (264)
T ss_dssp --S----EEEECSSCEEEE-SS---S--EEEEE-TTT-SEEEEE-E-EETTEE---EEEEEEETTEEEEEETTSSEEEEE
T ss_pred --c--ceEEEcCCCEEEEECCc---c--ceEEECCcccceEEEE-EEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEE
Confidence 2 34455444445444432 3 4555655556666666 333222222111 2566665444 5679999
Q ss_pred ECCCCCEEEE
Q 036621 326 EPGTGELRDF 335 (376)
Q Consensus 326 d~~~~~~~~v 335 (376)
|++|++....
T Consensus 201 dp~tG~V~~~ 210 (264)
T PF05096_consen 201 DPETGKVVGW 210 (264)
T ss_dssp ETTT-BEEEE
T ss_pred eCCCCeEEEE
Confidence 9999987654
No 54
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=87.88 E-value=16 Score=33.67 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=68.2
Q ss_pred CceEEEEecccCCCCceEEEEEEcCccceeee---cCCCC--CCCCC---ceEEEEE---CCeEEEEEEec-----CCCE
Q 036621 215 DGAFYWLLKLENDNDSYVILSFNMADEKFQEI---QGPCI--LESSL---DVTLGIY---YQSLSLLILDN-----VDHC 278 (376)
Q Consensus 215 ~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i---~~P~~--~~~~~---~~~l~~~---~G~L~~~~~~~-----~~~~ 278 (376)
+|.+||+... +.|...|++.+.-... .+-.. ....+ ..++..+ .|+|+++.-.+ ....
T Consensus 195 ~~~~~F~Sy~------G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpg 268 (342)
T PF06433_consen 195 GGRLYFVSYE------GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPG 268 (342)
T ss_dssp TTEEEEEBTT------SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-E
T ss_pred CCeEEEEecC------CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCc
Confidence 3578888754 5889999988764443 11111 11111 2233333 57888766522 3567
Q ss_pred EEEEEecCCceeeEEEEccCCceeEeEEEeeCCc-EEE-Ee-cCCEEEEEECCCCCEEE
Q 036621 279 FKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGA-FFV-ES-NSSQLLLYEPGTGELRD 334 (376)
Q Consensus 279 l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-l~~-~~-~~~~~~~yd~~~~~~~~ 334 (376)
-+||+++-..=.++.+| +++.-..-+.+..+++ +++ .. .++.+++||..|++...
T Consensus 269 teVWv~D~~t~krv~Ri-~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARI-PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEEETTTTEEEEEE-EEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred eEEEEEECCCCeEEEEE-eCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 89999988777778888 6655444567777666 444 33 35789999999986543
No 55
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=87.26 E-value=1.3 Score=27.96 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=27.4
Q ss_pred CceEEEEeccc--CCCCceEEEEEEcCccceeee-cCCCCCC
Q 036621 215 DGAFYWLLKLE--NDNDSYVILSFNMADEKFQEI-QGPCILE 253 (376)
Q Consensus 215 ~G~lYwl~~~~--~~~~~~~il~fD~~~~~~~~i-~~P~~~~ 253 (376)
++.+|..++.. .......+.+||+.+.+|+.+ ++|..+.
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~ 42 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRS 42 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCcc
Confidence 35667766654 222456789999999999999 6666554
No 56
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.16 E-value=13 Score=32.62 Aligned_cols=166 Identities=14% Similarity=0.091 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCceEeccCCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCc----cceeeecCCCCCCCC-Cc
Q 036621 183 SLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMAD----EKFQEIQGPCILESS-LD 257 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~----~~~~~i~~P~~~~~~-~~ 257 (376)
....+|+..+++++.+.-....|-. ...+.-||.+.-.++... ....+-.|++.+ ..|... +..+... +.
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCS-gg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~--~~~m~~~RWY 120 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCS-GGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTES--PNDMQSGRWY 120 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCccc-CcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceEC--cccccCCCcc
Confidence 4678899999999988633223332 446667888887766543 345677788765 445443 2222221 23
Q ss_pred eEEEEE-CCeEEEEEEecCCCEEEEEEecC-----CceeeEEEEc--cCCceeEeEEEeeCCcEEEEecCCEEEEEECCC
Q 036621 258 VTLGIY-YQSLSLLILDNVDHCFKIWVMRK-----KNWIKQLTVG--PFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGT 329 (376)
Q Consensus 258 ~~l~~~-~G~L~~~~~~~~~~~l~iW~l~~-----~~W~~~~~i~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~yd~~~ 329 (376)
.....+ +|++.++.... ....+.|=-+. ..|....... ....++-.+.+..+|+||+..+. +-..||.++
T Consensus 121 pT~~~L~DG~vlIvGG~~-~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-~s~i~d~~~ 198 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSN-NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-GSIIYDYKT 198 (243)
T ss_pred ccceECCCCCEEEEeCcC-CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-CcEEEeCCC
Confidence 344444 89999998853 44455554322 2222221110 01123555666788998887764 467779999
Q ss_pred CCE-EEEEEeeceeEEEEeeccccccC
Q 036621 330 GEL-RDFELECCWFSVYIYTESLIPLK 355 (376)
Q Consensus 330 ~~~-~~v~~~~~~~~~~~y~~sl~s~~ 355 (376)
++. +.+.--+.-.+.++...+-+-++
T Consensus 199 n~v~~~lP~lPg~~R~YP~sgssvmLP 225 (243)
T PF07250_consen 199 NTVVRTLPDLPGGPRNYPASGSSVMLP 225 (243)
T ss_pred CeEEeeCCCCCCCceecCCCcceEEec
Confidence 966 45432222234555555544444
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.33 E-value=24 Score=30.65 Aligned_cols=182 Identities=16% Similarity=0.122 Sum_probs=98.2
Q ss_pred eeceEEEecC-CCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEE
Q 036621 108 YCGIVFIEGL-NNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVA 186 (376)
Q Consensus 108 ~~Gll~~~~~-~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
.+|--|+..+ ...+-+|||..+..++-=.... .... .+...+|.+ |+ ... .+. ..+.
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG---~EVl----D~~~s~Dns----kf-------~s~--GgD--k~v~ 84 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG---HEVL----DAALSSDNS----KF-------ASC--GGD--KAVQ 84 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecCCC---ceee----ecccccccc----cc-------ccC--CCC--ceEE
Confidence 3677777764 5679999999887764211111 1100 123333422 11 111 112 4677
Q ss_pred EEEcCCC----ceEecc-CCCc-cccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeeecCCCCCCCCCceEE
Q 036621 187 VYTLRTN----SWKNLK-PIDY-TMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTL 260 (376)
Q Consensus 187 vyss~t~----~W~~~~-~~p~-~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~l 260 (376)
+++..|+ .||-.. .... .+.. .++|.+.|.+ ...+-+||-.+..+.+|+.-....+. ..-
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~Sgsf-----------D~s~r~wDCRS~s~ePiQildea~D~--V~S 150 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSF-----------DSSVRLWDCRSRSFEPIQILDEAKDG--VSS 150 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecC-cceEEEeccc-----------cceeEEEEcccCCCCccchhhhhcCc--eeE
Confidence 8888774 466544 2333 3433 5577777765 45889999999999988765555442 222
Q ss_pred EEECCeEEEEEEecCCCEEEEEEecCCceeeEEEEccCCce---eEeEEEeeCCcEE-EEecCCEEEEEECCCCCEEE
Q 036621 261 GIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGI---FQPLLFWKKGAFF-VESNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 261 ~~~~G~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~---~~~~~~~~~~~l~-~~~~~~~~~~yd~~~~~~~~ 334 (376)
....+..-+...- +.+++.+-+.. -++ ..+.+ ..-+.+.+++... ...-+..+-..|-+|+++-.
T Consensus 151 i~v~~heIvaGS~--DGtvRtydiR~------G~l-~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 151 IDVAEHEIVAGSV--DGTVRTYDIRK------GTL-SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred EEecccEEEeecc--CCcEEEEEeec------cee-ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 3334554444443 45555555432 222 22222 3335666666643 33446667777777766543
No 58
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=84.41 E-value=21 Score=31.25 Aligned_cols=135 Identities=13% Similarity=0.206 Sum_probs=80.9
Q ss_pred CceEeccCCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccc-eeeecCCCCCCCC---------CceEEEE
Q 036621 193 NSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEK-FQEIQGPCILESS---------LDVTLGI 262 (376)
Q Consensus 193 ~~W~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~-~~~i~~P~~~~~~---------~~~~l~~ 262 (376)
+.|...-.+|..+.. ..-|+.+|.+|+.... ...|+.||+.++. .....+|...... ..+.+++
T Consensus 56 ~~~~~~~~lp~~~~g-Tg~VVynGs~yynk~~-----t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~av 129 (249)
T KOG3545|consen 56 GRKAEKYRLPYSWDG-TGHVVYNGSLYYNKAG-----TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAV 129 (249)
T ss_pred cCcceEEeCCCCccc-cceEEEcceEEeeccC-----CcceEEEEeecceeeeeeeccccccCCCcccccCCCcccccee
Confidence 445555567776665 6789999999998854 5689999999843 3333555443221 1456667
Q ss_pred ECCeEEEEEE-ecCCCEEEEEEecC------CceeeEEEEccCCceeEeEEEeeCCcEEEEec----CCEE-EEEECCCC
Q 036621 263 YYQSLSLLIL-DNVDHCFKIWVMRK------KNWIKQLTVGPFIGIFQPLLFWKKGAFFVESN----SSQL-LLYEPGTG 330 (376)
Q Consensus 263 ~~G~L~~~~~-~~~~~~l~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~----~~~~-~~yd~~~~ 330 (376)
.+.-|.++-. ......+.|=+|+. ..|.--..=.... -++.-+|.++.... +..+ ++||..++
T Consensus 130 DE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~-----~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~ 204 (249)
T KOG3545|consen 130 DENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTTLPKRSAG-----NAFMICGVLYVVHSYNCTHTQISYAYDTTTG 204 (249)
T ss_pred cccceeEEecccccCCcEEeeccCHHHhheeeeeccccCCCCcC-----ceEEEeeeeEEEeccccCCceEEEEEEcCCC
Confidence 6666777766 33356666677765 5563322110111 12223355554432 2334 79999999
Q ss_pred CEEEEEEe
Q 036621 331 ELRDFELE 338 (376)
Q Consensus 331 ~~~~v~~~ 338 (376)
+-+.+.+.
T Consensus 205 ~~~~~~ip 212 (249)
T KOG3545|consen 205 TQERIDLP 212 (249)
T ss_pred ceeccccc
Confidence 88777754
No 59
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=83.14 E-value=39 Score=31.35 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=82.9
Q ss_pred ceEEEEEcCCCc--eEecc--CCCc-cccCCcceeEeCc-eEEEEecccCCCCceEEEEEEcC--ccceeee----cCCC
Q 036621 183 SLVAVYTLRTNS--WKNLK--PIDY-TMRLSSERTYFDG-AFYWLLKLENDNDSYVILSFNMA--DEKFQEI----QGPC 250 (376)
Q Consensus 183 ~~~~vyss~t~~--W~~~~--~~p~-~~~~~~~~v~~~G-~lYwl~~~~~~~~~~~il~fD~~--~~~~~~i----~~P~ 250 (376)
..+.+|+...+. ..... .++. .-++ +-.+.-+| .+|..... ...|.+|+.. +.++..+ .+|.
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR-h~~f~pdg~~~Yv~~e~-----s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPR-HLAFSPDGKYAYVVNEL-----SNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEE-EEEE-TTSSEEEEEETT-----TTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCc-EEEEcCCcCEEEEecCC-----CCcEEEEeecccCCceeEEEEeeeccc
Confidence 578888887655 55433 2222 1111 11222255 46665543 4567777766 6666554 4555
Q ss_pred CCCCC-CceEEEEE-CCeEEEEEEecCCCEEEEEEecC--CceeeEEEEccCCc-eeEeEEEeeCCcEEEEec--CCEEE
Q 036621 251 ILESS-LDVTLGIY-YQSLSLLILDNVDHCFKIWVMRK--KNWIKQLTVGPFIG-IFQPLLFWKKGAFFVESN--SSQLL 323 (376)
Q Consensus 251 ~~~~~-~~~~l~~~-~G~L~~~~~~~~~~~l~iW~l~~--~~W~~~~~i~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~ 323 (376)
..... ....+... +|+..++... ....|.++.++. ..-+++..+ +... .-+-+.+..+|+.++..+ +..+.
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr-~~~sI~vf~~d~~~g~l~~~~~~-~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNR-GSNSISVFDLDPATGTLTLVQTV-PTGGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEEC-TTTEEEEEEECTTTTTEEEEEEE-EESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred cccccCCceeEEEecCCCEEEEEec-cCCEEEEEEEecCCCceEEEEEE-eCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 43322 24455555 6764444332 278999999965 567777777 4432 245566677888766554 45566
Q ss_pred EE--ECCCCCEEEEEE
Q 036621 324 LY--EPGTGELRDFEL 337 (376)
Q Consensus 324 ~y--d~~~~~~~~v~~ 337 (376)
+| |.+++.++.+.-
T Consensus 318 vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 318 VFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCcEEEecc
Confidence 55 678889998864
No 60
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=83.10 E-value=2.4 Score=26.70 Aligned_cols=20 Identities=35% Similarity=0.672 Sum_probs=17.6
Q ss_pred ceEEEEEcCCCceEeccCCC
Q 036621 183 SLVAVYTLRTNSWKNLKPID 202 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~p 202 (376)
..+++|+.++++|+.++.++
T Consensus 30 ~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 30 NDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred ceeEEEECCCCEEeecCCCC
Confidence 78999999999999987653
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.15 E-value=49 Score=31.72 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=96.0
Q ss_pred ecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEEEEcCCCceEe-ccCCCc
Q 036621 125 NIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKN-LKPIDY 203 (376)
Q Consensus 125 NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~p~ 203 (376)
+|-++-|.+.-.++.....+. ...+.+.|. ..|..+..++ ..+.+|++.+..=+. +..+..
T Consensus 8 t~e~~~w~~~~~~~~~ke~~~-----vssl~fsp~-~P~d~aVt~S------------~rvqly~~~~~~~~k~~srFk~ 69 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEHNS-----VSSLCFSPK-HPYDFAVTSS------------VRVQLYSSVTRSVRKTFSRFKD 69 (487)
T ss_pred CccchhhhhhcccccccccCc-----ceeEecCCC-CCCceEEecc------------cEEEEEecchhhhhhhHHhhcc
Confidence 455666666544443333322 235555443 2344444422 689999988743222 222211
Q ss_pred cccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccce-eee---cCCCCCCCCCceEEEEECCeEEEEEEecCCCEE
Q 036621 204 TMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKF-QEI---QGPCILESSLDVTLGIYYQSLSLLILDNVDHCF 279 (376)
Q Consensus 204 ~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~-~~i---~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l 279 (376)
... ...+.-||.|...+.. .+.+-.||..+... ..+ ..|.+. ......++.+.+.+.. +...
T Consensus 70 ~v~--s~~fR~DG~LlaaGD~-----sG~V~vfD~k~r~iLR~~~ah~apv~~-----~~f~~~d~t~l~s~sD--d~v~ 135 (487)
T KOG0310|consen 70 VVY--SVDFRSDGRLLAAGDE-----SGHVKVFDMKSRVILRQLYAHQAPVHV-----TKFSPQDNTMLVSGSD--DKVV 135 (487)
T ss_pred cee--EEEeecCCeEEEccCC-----cCcEEEeccccHHHHHHHhhccCceeE-----EEecccCCeEEEecCC--CceE
Confidence 110 2244557999887764 67899999655222 222 233322 2223345555555555 7889
Q ss_pred EEEEecCCceeeEEEEccCCceeEeEEEee-CCcEEEEe-cCCEEEEEECCCCCEEEEEEe
Q 036621 280 KIWVMRKKNWIKQLTVGPFIGIFQPLLFWK-KGAFFVES-NSSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 280 ~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~~~l~~~~-~~~~~~~yd~~~~~~~~v~~~ 338 (376)
.+|.+.... . ...+.-.....+-..+.. ++-+++.. +|+.+-.||.++..-+-+.++
T Consensus 136 k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln 194 (487)
T KOG0310|consen 136 KYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN 194 (487)
T ss_pred EEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec
Confidence 999998843 2 444422222233334443 34466553 478899999999873444454
No 62
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.06 E-value=42 Score=31.07 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=79.9
Q ss_pred ceEEEEEcCCCceEeccCCCccccCCcceeEeCceEEEEecccC----CCCceEEEEEEcCccceeee-cCCCCCCCCC-
Q 036621 183 SLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLEN----DNDSYVILSFNMADEKFQEI-QGPCILESSL- 256 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~----~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~- 256 (376)
..+-+|+..++.|+.....|+.-.. .+++...|..-++..-.. ........-|.-...+|... ++|......-
T Consensus 196 ~ev~sy~p~~n~W~~~G~~pf~~~a-Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~e 274 (381)
T COG3055 196 KEVLSYDPSTNQWRNLGENPFYGNA-GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKE 274 (381)
T ss_pred ccccccccccchhhhcCcCcccCcc-CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCcc
Confidence 4678899999999998877772222 235555554333332211 11344566666778999888 6766654431
Q ss_pred ---ceEEEEECCeEEEEEEe--c------------------CCCEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCcE
Q 036621 257 ---DVTLGIYYQSLSLLILD--N------------------VDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAF 313 (376)
Q Consensus 257 ---~~~l~~~~G~L~~~~~~--~------------------~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~l 313 (376)
...-..++|.+-+.... + ..-+=+||.+++..|..+..+ |. .+..-+.+.-++.|
T Consensus 275 GvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeL-p~-~l~YG~s~~~nn~v 352 (381)
T COG3055 275 GVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGEL-PQ-GLAYGVSLSYNNKV 352 (381)
T ss_pred ccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeeccc-CC-CccceEEEecCCcE
Confidence 11122334444444431 0 123448999999999999999 77 33444566667778
Q ss_pred EEEec
Q 036621 314 FVESN 318 (376)
Q Consensus 314 ~~~~~ 318 (376)
+++.+
T Consensus 353 l~IGG 357 (381)
T COG3055 353 LLIGG 357 (381)
T ss_pred EEEcc
Confidence 77754
No 63
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=81.30 E-value=51 Score=31.37 Aligned_cols=145 Identities=14% Similarity=0.063 Sum_probs=79.2
Q ss_pred ceEEEEEcCCC-----ceEecc-CCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccc---eeeecCCCCCC
Q 036621 183 SLVAVYTLRTN-----SWKNLK-PIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEK---FQEIQGPCILE 253 (376)
Q Consensus 183 ~~~~vyss~t~-----~W~~~~-~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~---~~~i~~P~~~~ 253 (376)
..+.+.+..++ .|+.+. ..+.... ..-..++.+|.++..+. ....|+..|+.+-. |..+-.|....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~---~v~~~~~~~yi~Tn~~a--~~~~l~~~~l~~~~~~~~~~~l~~~~~~ 326 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEY---YVDHHGDRLYILTNDDA--PNGRLVAVDLADPSPAEWWTVLIPEDED 326 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EE---EEEEETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEE---EEEccCCEEEEeeCCCC--CCcEEEEecccccccccceeEEcCCCCc
Confidence 45666666654 677665 2222111 13344778888876432 46799999998765 55332222211
Q ss_pred CCCceEEEEECCeEEEEEEecCCCEEEEEEecCCceeeEEEEccCCceeEeEEEe--e-CCcEEEEec----CCEEEEEE
Q 036621 254 SSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFW--K-KGAFFVESN----SSQLLLYE 326 (376)
Q Consensus 254 ~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~--~-~~~l~~~~~----~~~~~~yd 326 (376)
. ....+...++.|.+.........|.++.++ ..|..... ++.....+.++. . .++++|... -..++.||
T Consensus 327 ~-~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~~~~~~~--~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d 402 (414)
T PF02897_consen 327 V-SLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DGKESREI--PLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYD 402 (414)
T ss_dssp E-EEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEEEEE--ESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEE
T ss_pred e-eEEEEEEECCEEEEEEEECCccEEEEEECC-CCcEEeee--cCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 0 123444568888888887555666666665 24554443 233222222332 2 334655543 24699999
Q ss_pred CCCCCEEEEE
Q 036621 327 PGTGELRDFE 336 (376)
Q Consensus 327 ~~~~~~~~v~ 336 (376)
+++++.+.+.
T Consensus 403 ~~t~~~~~~k 412 (414)
T PF02897_consen 403 LATGELTLLK 412 (414)
T ss_dssp TTTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999998764
No 64
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.11 E-value=16 Score=33.60 Aligned_cols=130 Identities=12% Similarity=0.155 Sum_probs=83.9
Q ss_pred CCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcC--ccceeee-cCCCCCCCCCceEEEEECCeEEEEEEecCC
Q 036621 200 PIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMA--DEKFQEI-QGPCILESSLDVTLGIYYQSLSLLILDNVD 276 (376)
Q Consensus 200 ~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~--~~~~~~i-~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~ 276 (376)
++|..+.+ ..+...+..+|.-.+. ....-...|+. ...|+.+ .+|-.... ...-+.++|+|++.......
T Consensus 32 dlPvg~Kn-G~Ga~ig~~~YVGLGs----~G~afy~ldL~~~~k~W~~~a~FpG~~rn--qa~~a~~~~kLyvFgG~Gk~ 104 (381)
T COG3055 32 DLPVGFKN-GAGALIGDTVYVGLGS----AGTAFYVLDLKKPGKGWTKIADFPGGARN--QAVAAVIGGKLYVFGGYGKS 104 (381)
T ss_pred CCCccccc-cccceecceEEEEecc----CCccceehhhhcCCCCceEcccCCCcccc--cchheeeCCeEEEeeccccC
Confidence 33444554 5577777789988765 34456666665 4699998 77776554 56677889999999983212
Q ss_pred C------EEEEEEecC--CceeeEEEEccCCceeEeEEEeeCC-cEEEEec-----------------------------
Q 036621 277 H------CFKIWVMRK--KNWIKQLTVGPFIGIFQPLLFWKKG-AFFVESN----------------------------- 318 (376)
Q Consensus 277 ~------~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~-~l~~~~~----------------------------- 318 (376)
. .-++++++. .+|.++.+. ....+....++..++ .++|..+
T Consensus 105 ~~~~~~~~nd~Y~y~p~~nsW~kl~t~-sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~ 183 (381)
T COG3055 105 VSSSPQVFNDAYRYDPSTNSWHKLDTR-SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAH 183 (381)
T ss_pred CCCCceEeeeeEEecCCCChhheeccc-cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHH
Confidence 1 235566666 999999888 333333333333333 3433210
Q ss_pred -----------CCEEEEEECCCCCEEEEEE
Q 036621 319 -----------SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 319 -----------~~~~~~yd~~~~~~~~v~~ 337 (376)
.+.+..||++++.|+.++.
T Consensus 184 yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~ 213 (381)
T COG3055 184 YFDKKAEDYFFNKEVLSYDPSTNQWRNLGE 213 (381)
T ss_pred HhCCCHHHhcccccccccccccchhhhcCc
Confidence 2359999999999999874
No 65
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=80.96 E-value=2.5 Score=26.48 Aligned_cols=20 Identities=20% Similarity=0.576 Sum_probs=14.0
Q ss_pred ceEEEEEcCCCceEeccCCC
Q 036621 183 SLVAVYTLRTNSWKNLKPID 202 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~p 202 (376)
..+++|+..+++|+.++.+|
T Consensus 29 ~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 29 NDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --EEEEETTTTEEEE--SS-
T ss_pred CCEEEEECCCCEEEECCCCC
Confidence 57899999999999998766
No 66
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=80.82 E-value=46 Score=30.61 Aligned_cols=117 Identities=13% Similarity=0.152 Sum_probs=72.5
Q ss_pred CceEEEEecccCCCCceEEEEEEcCccceeee---cCCCCCCCCCceEEEEECCeEEEEEEecCCCEEEEEEecC--Cce
Q 036621 215 DGAFYWLLKLENDNDSYVILSFNMADEKFQEI---QGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRK--KNW 289 (376)
Q Consensus 215 ~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i---~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~--~~W 289 (376)
+|..-|.+.- ....|..||++..+.... .+++.... +..+.--+|+++.+.... ..++.+|..+. .+-
T Consensus 155 ~~~~l~v~DL----G~Dri~~y~~~dg~L~~~~~~~v~~G~GP--RHi~FHpn~k~aY~v~EL-~stV~v~~y~~~~g~~ 227 (346)
T COG2706 155 DGRYLVVPDL----GTDRIFLYDLDDGKLTPADPAEVKPGAGP--RHIVFHPNGKYAYLVNEL-NSTVDVLEYNPAVGKF 227 (346)
T ss_pred CCCEEEEeec----CCceEEEEEcccCccccccccccCCCCCc--ceEEEcCCCcEEEEEecc-CCEEEEEEEcCCCceE
Confidence 5555555544 356788888887666544 34444332 122222378876665532 68999999998 667
Q ss_pred eeEEEEccCCce------eEeEEEeeCCcEEEEecCC----EEEEEECCCCCEEEEEEe
Q 036621 290 IKQLTVGPFIGI------FQPLLFWKKGAFFVESNSS----QLLLYEPGTGELRDFELE 338 (376)
Q Consensus 290 ~~~~~i~~~~~~------~~~~~~~~~~~l~~~~~~~----~~~~yd~~~~~~~~v~~~ 338 (376)
..+.+|..++.. ..-+-+..+|.++...+.+ .++..|+.+++++-+...
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 666666323221 4455667788877766532 366678888888888764
No 67
>PLN02772 guanylate kinase
Probab=80.66 E-value=10 Score=35.74 Aligned_cols=75 Identities=9% Similarity=0.072 Sum_probs=52.3
Q ss_pred cceeEeCceEEEEecccCCC-CceEEEEEEcCccceeee----cCCCCCCCCCceEEEEECCeEEEEEEecCCCEEEEEE
Q 036621 209 SERTYFDGAFYWLLKLENDN-DSYVILSFNMADEKFQEI----QGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWV 283 (376)
Q Consensus 209 ~~~v~~~G~lYwl~~~~~~~-~~~~il~fD~~~~~~~~i----~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~ 283 (376)
..++.++.++|.++++.... ....+.+||..+.+|..- ..|..+.. ......-+++|.++.... ...=+||-
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~G--hSa~v~~~~rilv~~~~~-~~~~~~w~ 104 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKG--YSAVVLNKDRILVIKKGS-APDDSIWF 104 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCc--ceEEEECCceEEEEeCCC-CCccceEE
Confidence 55899999999999765432 356899999999999764 34444432 233334478888888732 34578999
Q ss_pred ecC
Q 036621 284 MRK 286 (376)
Q Consensus 284 l~~ 286 (376)
|+-
T Consensus 105 l~~ 107 (398)
T PLN02772 105 LEV 107 (398)
T ss_pred EEc
Confidence 875
No 68
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=80.54 E-value=11 Score=23.12 Aligned_cols=39 Identities=5% Similarity=-0.031 Sum_probs=28.9
Q ss_pred ceEEEEECCeEEEEEEec--CCCEEEEEEecC--CceeeEEEE
Q 036621 257 DVTLGIYYQSLSLLILDN--VDHCFKIWVMRK--KNWIKQLTV 295 (376)
Q Consensus 257 ~~~l~~~~G~L~~~~~~~--~~~~l~iW~l~~--~~W~~~~~i 295 (376)
....+..+++|+++++.. ....-.+|+++- ..|+.+..|
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 356788999999999932 344445666655 999999887
No 69
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.31 E-value=17 Score=32.61 Aligned_cols=153 Identities=15% Similarity=0.102 Sum_probs=93.7
Q ss_pred eeEeCceEEEEecccCCCCceEEEEEEcCccceeee-cCCCCCCCCCceEEE-EECCeEEEEEEec-------CCCEEEE
Q 036621 211 RTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEI-QGPCILESSLDVTLG-IYYQSLSLLILDN-------VDHCFKI 281 (376)
Q Consensus 211 ~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~l~-~~~G~L~~~~~~~-------~~~~l~i 281 (376)
...-+|.+.+-+..+...+...|=+||.. +.|+.+ ++|.+-... ..+. .-||++.++...+ ...++.|
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r-~~fqrvgE~~t~GiGp--Hev~lm~DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAR-EGFQRVGEFSTHGIGP--HEVTLMADGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecc-cccceecccccCCcCc--ceeEEecCCcEEEEeCCceecccccCccccch
Confidence 44457766666665555567889999998 888887 777654331 2222 3367765554421 1223333
Q ss_pred EEecC---------CceeeEEEEcc--CCce-eEeEEEeeCCcEEEEe-cC------CEEEEEECCCCCEEEEEEe-ece
Q 036621 282 WVMRK---------KNWIKQLTVGP--FIGI-FQPLLFWKKGAFFVES-NS------SQLLLYEPGTGELRDFELE-CCW 341 (376)
Q Consensus 282 W~l~~---------~~W~~~~~i~~--~~~~-~~~~~~~~~~~l~~~~-~~------~~~~~yd~~~~~~~~v~~~-~~~ 341 (376)
=.|+- ..=..++++ | +..+ .+-+.+..+|.|++-+ +. -.++.--.+++.++-+... ..+
T Consensus 197 dsMePSlvlld~atG~liekh~L-p~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTL-PASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred hhcCccEEEEeccccchhhhccC-chhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence 33322 333444555 4 2222 5667777888887743 21 1377777888888888876 456
Q ss_pred eEEEEeeccccccCCCCceeeeeceee
Q 036621 342 FSVYIYTESLIPLKGGDGVFDFDIPWH 368 (376)
Q Consensus 342 ~~~~~y~~sl~s~~~~~~~~~~~~~~~ 368 (376)
..+-.|+-|+ -..+.++.+.++||.-
T Consensus 276 ~~~anYigsi-A~n~~~glV~lTSP~G 301 (366)
T COG3490 276 AAFANYIGSI-AANRRDGLVALTSPRG 301 (366)
T ss_pred HHHHhhhhhe-eecccCCeEEEecCCC
Confidence 6677888887 4555788888888864
No 70
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=78.55 E-value=41 Score=32.33 Aligned_cols=56 Identities=13% Similarity=0.219 Sum_probs=36.3
Q ss_pred ceEeccCCCccccCCcceeEeCceEEEEecccC-------------------------------C-----CCceEEEEEE
Q 036621 194 SWKNLKPIDYTMRLSSERTYFDGAFYWLLKLEN-------------------------------D-----NDSYVILSFN 237 (376)
Q Consensus 194 ~W~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~-------------------------------~-----~~~~~il~fD 237 (376)
..+.+-+|+... ++++.+.+.+|++..... + .....|..||
T Consensus 217 tFeK~vdl~~~v---S~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylyd 293 (668)
T COG4946 217 TFEKFVDLDGNV---SSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYD 293 (668)
T ss_pred ceeeeeecCCCc---CCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeC
Confidence 455444555434 348999999999986531 0 1355678888
Q ss_pred cCccceeee--cCCCCC
Q 036621 238 MADEKFQEI--QGPCIL 252 (376)
Q Consensus 238 ~~~~~~~~i--~~P~~~ 252 (376)
+++++...+ .+|-..
T Consensus 294 P~td~lekldI~lpl~r 310 (668)
T COG4946 294 PETDSLEKLDIGLPLDR 310 (668)
T ss_pred CCcCcceeeecCCcccc
Confidence 888888765 566653
No 71
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=78.22 E-value=39 Score=32.00 Aligned_cols=105 Identities=11% Similarity=0.143 Sum_probs=58.0
Q ss_pred cceeEeCceEEEEecccCCCCceEEEEEEcCcc--ceeeecCCCCCCCCCceEEEEECCeEEEEEEecCCCEEEEEEecC
Q 036621 209 SERTYFDGAFYWLLKLENDNDSYVILSFNMADE--KFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRK 286 (376)
Q Consensus 209 ~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~--~~~~i~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~ 286 (376)
..++..+|.+|.... ...+.++|..+. .|+. +.... ..++..+|.|++.... ..+.....+.
T Consensus 250 ~sP~v~~~~vy~~~~------~g~l~ald~~tG~~~W~~-~~~~~------~~~~~~~~~vy~~~~~---g~l~ald~~t 313 (394)
T PRK11138 250 TTPVVVGGVVYALAY------NGNLVALDLRSGQIVWKR-EYGSV------NDFAVDGGRIYLVDQN---DRVYALDTRG 313 (394)
T ss_pred CCcEEECCEEEEEEc------CCeEEEEECCCCCEEEee-cCCCc------cCcEEECCEEEEEcCC---CeEEEEECCC
Confidence 347788999998763 348999999875 4543 22110 1233445666655432 2233333322
Q ss_pred --CceeeEEEEccCCceeEeEEEeeCCcEEEEecCCEEEEEECCCCCEE
Q 036621 287 --KNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 287 --~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~yd~~~~~~~ 333 (376)
..|.... . .......|.. .++.|++...++.++++|.++++..
T Consensus 314 G~~~W~~~~-~-~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 314 GVELWSQSD-L-LHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred CcEEEcccc-c-CCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 3454321 1 0011122332 3577888777888999999998643
No 72
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=77.13 E-value=6.2 Score=24.71 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCceEeccCCCc
Q 036621 183 SLVAVYTLRTNSWKNLKPIDY 203 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~p~ 203 (376)
..+++|+..+++|+++..+|.
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred cCEEEEECCCCEEEECCCCCC
Confidence 688999999999999987666
No 73
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=77.03 E-value=24 Score=33.83 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=58.5
Q ss_pred ccceeee-cCCCCCCCCCceEEEEECCeEEEEEEecCCCEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCc-EEEEe
Q 036621 240 DEKFQEI-QGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGA-FFVES 317 (376)
Q Consensus 240 ~~~~~~i-~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-l~~~~ 317 (376)
...|..+ .++.+... + +..+++++.+.-..+..++.-=-|+...=. .++ ++.. +.|.-+..+|+ |+|+
T Consensus 215 g~tFeK~vdl~~~vS~---P--mIV~~RvYFlsD~eG~GnlYSvdldGkDlr-rHT--nFtd-YY~R~~nsDGkrIvFq- 284 (668)
T COG4946 215 GKTFEKFVDLDGNVSS---P--MIVGERVYFLSDHEGVGNLYSVDLDGKDLR-RHT--NFTD-YYPRNANSDGKRIVFQ- 284 (668)
T ss_pred CcceeeeeecCCCcCC---c--eEEcceEEEEecccCccceEEeccCCchhh-hcC--Cchh-ccccccCCCCcEEEEe-
Confidence 3367666 77777654 2 345788888777533332211112111100 010 1111 45555555665 5665
Q ss_pred cCCEEEEEECCCCCEEEEEEe-e--------ceeEEEEeeccccccC
Q 036621 318 NSSQLLLYEPGTGELRDFELE-C--------CWFSVYIYTESLIPLK 355 (376)
Q Consensus 318 ~~~~~~~yd~~~~~~~~v~~~-~--------~~~~~~~y~~sl~s~~ 355 (376)
..+.++.|||+|.+++++.|+ + .......|.+.+...+
T Consensus 285 ~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~ 331 (668)
T COG4946 285 NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVN 331 (668)
T ss_pred cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCC
Confidence 567799999999999999997 1 1223455666554443
No 74
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=76.25 E-value=52 Score=30.13 Aligned_cols=94 Identities=10% Similarity=0.019 Sum_probs=55.1
Q ss_pred ceEEEEEEcCc-cceeee-cCCCCCCCCCceEEEEE-CCe-EEEEEEecCCCEEEEEEecC-CceeeEEEEccCCceeEe
Q 036621 230 SYVILSFNMAD-EKFQEI-QGPCILESSLDVTLGIY-YQS-LSLLILDNVDHCFKIWVMRK-KNWIKQLTVGPFIGIFQP 304 (376)
Q Consensus 230 ~~~il~fD~~~-~~~~~i-~~P~~~~~~~~~~l~~~-~G~-L~~~~~~~~~~~l~iW~l~~-~~W~~~~~i~~~~~~~~~ 304 (376)
...|..||+.+ .+...+ .++.... ...+... +|+ |++.... ...+.+|..++ ..++.+..+ +......-
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~---~~~l~~spd~~~lyv~~~~--~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~ 84 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQ---VQPMVISPDKRHLYVGVRP--EFRVLSYRIADDGALTFAAES-PLPGSPTH 84 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCC---CccEEECCCCCEEEEEECC--CCcEEEEEECCCCceEEeeee-cCCCCceE
Confidence 45788888863 455554 2222111 1223333 566 4554433 67888999976 677777777 54433344
Q ss_pred EEEeeCCcEEEEec--CCEEEEEECCC
Q 036621 305 LLFWKKGAFFVESN--SSQLLLYEPGT 329 (376)
Q Consensus 305 ~~~~~~~~l~~~~~--~~~~~~yd~~~ 329 (376)
+++..+++.++... ++.+.+||+++
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 66667777555433 56788888864
No 75
>PLN00181 protein SPA1-RELATED; Provisional
Probab=74.11 E-value=1.2e+02 Score=31.85 Aligned_cols=185 Identities=9% Similarity=0.070 Sum_probs=93.3
Q ss_pred eEEEecCCCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEEEEc
Q 036621 111 IVFIEGLNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTL 190 (376)
Q Consensus 111 ll~~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
.|........+.|||..+++....-. .+... ...+.+++..+.+-+.+- .+ ..+.+|+.
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~~~~----~H~~~-----V~~l~~~p~~~~~L~Sgs-----~D-------g~v~iWd~ 605 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVTEMK----EHEKR-----VWSIDYSSADPTLLASGS-----DD-------GSVKLWSI 605 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEec----CCCCC-----EEEEEEcCCCCCEEEEEc-----CC-------CEEEEEEC
Confidence 44444456789999988776432111 11111 356667665444322221 22 47788887
Q ss_pred CCCc-eEeccCCCccccCCcceeEe---CceEEEEecccCCCCceEEEEEEcCccceeeecCCCCCCCCCceEEEEECCe
Q 036621 191 RTNS-WKNLKPIDYTMRLSSERTYF---DGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLGIYYQS 266 (376)
Q Consensus 191 ~t~~-W~~~~~~p~~~~~~~~~v~~---~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~l~~~~G~ 266 (376)
+++. ...+..... -..+.+ +|.....+.. .+.|..||+.+.+-....+..+... -..+.-.+|.
T Consensus 606 ~~~~~~~~~~~~~~-----v~~v~~~~~~g~~latgs~-----dg~I~iwD~~~~~~~~~~~~~h~~~--V~~v~f~~~~ 673 (793)
T PLN00181 606 NQGVSIGTIKTKAN-----ICCVQFPSESGRSLAFGSA-----DHKVYYYDLRNPKLPLCTMIGHSKT--VSYVRFVDSS 673 (793)
T ss_pred CCCcEEEEEecCCC-----eEEEEEeCCCCCEEEEEeC-----CCeEEEEECCCCCccceEecCCCCC--EEEEEEeCCC
Confidence 6532 222211000 011111 3444444432 4588999987653211112111111 1223334666
Q ss_pred EEEEEEecCCCEEEEEEecC----CceeeEEEEccCCceeEeEEEeeCCcEEEEe-cCCEEEEEECCCC
Q 036621 267 LSLLILDNVDHCFKIWVMRK----KNWIKQLTVGPFIGIFQPLLFWKKGAFFVES-NSSQLLLYEPGTG 330 (376)
Q Consensus 267 L~~~~~~~~~~~l~iW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~yd~~~~ 330 (376)
..+.... +..+.||.+.. ..|..+..+.........+++..++.++... .++.+.+|+..+.
T Consensus 674 ~lvs~s~--D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 674 TLVSSST--DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEEEEC--CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 5555545 77899999875 3566666662222223345555566655544 4678999987755
No 76
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=74.06 E-value=9.9 Score=36.61 Aligned_cols=144 Identities=7% Similarity=0.002 Sum_probs=79.6
Q ss_pred EEEEecCcccceecCCCccCCC--CccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEEEEcCCCceEec
Q 036621 121 ITLWNIATRESITLPKYRAIIP--QYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNL 198 (376)
Q Consensus 121 ~~v~NP~T~~~~~LP~~~~~~~--~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
+..-.|.+-.|-++|+...... ......+....+.+++.+.--.+..- + + +.+....+++|+-+.+.|..+
T Consensus 231 ~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGG---W--d--G~~~l~DFW~Y~v~e~~W~~i 303 (723)
T KOG2437|consen 231 YISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGG---W--D--GTQDLADFWAYSVKENQWTCI 303 (723)
T ss_pred hhhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecC---c--c--cchhHHHHHhhcCCcceeEEe
Confidence 4455678888888876653211 01111122345556554432111111 1 1 122225789999999999988
Q ss_pred c---CCCccccCCcceeEeCc--eEEEEecccCC------CCceEEEEEEcCccceeeecCCCCCCCC----CceEEEEE
Q 036621 199 K---PIDYTMRLSSERTYFDG--AFYWLLKLEND------NDSYVILSFNMADEKFQEIQGPCILESS----LDVTLGIY 263 (376)
Q Consensus 199 ~---~~p~~~~~~~~~v~~~G--~lYwl~~~~~~------~~~~~il~fD~~~~~~~~i~~P~~~~~~----~~~~l~~~ 263 (376)
. ..|..... +..|.-.. ++|.++..-.. +...-+-.||.+++.|..+..-.....+ +..++++.
T Consensus 304 N~~t~~PG~RsC-HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd 382 (723)
T KOG2437|consen 304 NRDTEGPGARSC-HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVD 382 (723)
T ss_pred ecCCCCCcchhh-hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEe
Confidence 7 24542222 22333333 77877754321 1466799999999999998543222111 34455665
Q ss_pred CCe--EEEEEE
Q 036621 264 YQS--LSLLIL 272 (376)
Q Consensus 264 ~G~--L~~~~~ 272 (376)
+++ ||+.++
T Consensus 383 ~~k~~iyVfGG 393 (723)
T KOG2437|consen 383 SEKHMIYVFGG 393 (723)
T ss_pred cCcceEEEecC
Confidence 444 888877
No 77
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=71.87 E-value=1e+02 Score=30.01 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCceEeccCCCccccCCcceeEeCceEEEEecccCCC-----CceEEEEEEcCccceeeecCCCCCC
Q 036621 183 SLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDN-----DSYVILSFNMADEKFQEIQGPCILE 253 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~-----~~~~il~fD~~~~~~~~i~~P~~~~ 253 (376)
-.+.||+.+++.=.... -..+|-+|-|+.-+.+. ....|..+|-.=.+-+.+++|....
T Consensus 267 G~i~Iw~~~~~~~~k~~------------~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 267 GNILIWSKGTNRISKQV------------HAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFG 330 (626)
T ss_pred ceEEEEeCCCceEEeEe------------eecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcC
Confidence 36777877666543322 13344444444322111 3557888885556667778887654
No 78
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=71.79 E-value=75 Score=28.49 Aligned_cols=216 Identities=13% Similarity=0.098 Sum_probs=114.8
Q ss_pred ceeceEEEec-CCCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCC----CCCeEEEEEEE------EecCC
Q 036621 107 LYCGIVFIEG-LNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPK----TKDYKVVLILT------LWDEK 175 (376)
Q Consensus 107 s~~Gll~~~~-~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~----~~~ykvv~~~~------~~~~~ 175 (376)
+-+|-|-+.. +...+-=.||.|++....|-........ +.+|-|.. +..--|.++.. +|.-.
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phg-------iv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHG-------IVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred CCCCceEEecCccccceecCCCCCceEEEecCCCCCCce-------EEECCCCCeeEecCcceeEEecCcccceEEeecc
Confidence 4467665554 3445666899999999988666443322 22222211 00112333211 01001
Q ss_pred CCCCcccceEEEEEcCCCceEecc-----CCCc------cc----cCCcc--eeEeCceEEEEecccCCCCceEEEEEEc
Q 036621 176 RDSSCAFSLVAVYTLRTNSWKNLK-----PIDY------TM----RLSSE--RTYFDGAFYWLLKLENDNDSYVILSFNM 238 (376)
Q Consensus 176 ~~~~~~~~~~~vyss~t~~W~~~~-----~~p~------~~----~~~~~--~v~~~G~lYwl~~~~~~~~~~~il~fD~ 238 (376)
.+.....+...||+-..+.|=+-. .+.. .+ +.... ++.-||.+|+-... .+.|.-.|+
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla-----gnaiaridp 217 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLA-----GNAIARIDP 217 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEecc-----ccceEEccc
Confidence 111112267788998888895443 1211 11 11122 44448999887544 568999999
Q ss_pred CccceeeecCCCCCCCCCceEEEEECCeEEEEEEecCCCEEEEEEecCCceeeEEEEccCCc-eeEeEEEeeCCcEEEE-
Q 036621 239 ADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIG-IFQPLLFWKKGAFFVE- 316 (376)
Q Consensus 239 ~~~~~~~i~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~-~~~~~~~~~~~~l~~~- 316 (376)
.+..-.+++.|..........-....|++-+.... ...+.-..-...+|.. +.+ |-.. --.-+.+...+.|.+.
T Consensus 218 ~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg--~g~l~rfdPs~~sW~e-ypL-Pgs~arpys~rVD~~grVW~se 293 (353)
T COG4257 218 FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG--TGSLHRFDPSVTSWIE-YPL-PGSKARPYSMRVDRHGRVWLSE 293 (353)
T ss_pred ccCCcceecCCCcccccccccccCccCcEEEeccC--CceeeEeCccccccee-eeC-CCCCCCcceeeeccCCcEEeec
Confidence 99988999999885443111112223444443332 2222222222244543 223 2111 1223455666777663
Q ss_pred ecCCEEEEEECCCCCEEEEEEe
Q 036621 317 SNSSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 317 ~~~~~~~~yd~~~~~~~~v~~~ 338 (376)
...+.+..||++|.++..+.+.
T Consensus 294 a~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 294 ADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred cccCceeecCcccceEEEecCC
Confidence 3456799999999999999875
No 79
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=70.29 E-value=68 Score=27.39 Aligned_cols=187 Identities=14% Similarity=0.093 Sum_probs=92.3
Q ss_pred eeceEEEecCCCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEE
Q 036621 108 YCGIVFIEGLNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAV 187 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
.+|.+++......++.+|+.||+...--..+....... ... +=+|+... .+ ..+..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--------~~~-----~~~v~v~~----~~-------~~l~~ 90 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--------VVD-----GGRVYVGT----SD-------GSLYA 90 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE--------EEE-----TTEEEEEE----TT-------SEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee--------eec-----cccccccc----ce-------eeeEe
Confidence 67888888788899999999998653222221100100 000 11122220 11 24555
Q ss_pred EEcCCC--ceEe-ccCCCc--cccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccce--ee-ecCCCCCCC-----
Q 036621 188 YTLRTN--SWKN-LKPIDY--TMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKF--QE-IQGPCILES----- 254 (376)
Q Consensus 188 yss~t~--~W~~-~~~~p~--~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~--~~-i~~P~~~~~----- 254 (376)
++..++ .|+. ....+. .... ......++.+|.... ...|.++|+.+.+- .. +..|.....
T Consensus 91 ~d~~tG~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSPPAGVRSS-SSPAVDGDRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp EETTTSCEEEEEEE-SSCTCSTB---SEEEEETTEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred cccCCcceeeeeccccccccccccc-cCceEecCEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence 665443 5883 433222 2222 334444666766653 45899999886544 33 233332111
Q ss_pred CCceEEEEECCeEEEEEEecCCCEEEEEEecCC--ceeeEEEEccCCceeEeEEEeeCCcEEEEecCCEEEEEECCCCCE
Q 036621 255 SLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKK--NWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGEL 332 (376)
Q Consensus 255 ~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~~--~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~yd~~~~~~ 332 (376)
.....+...+|.+++.... ...+.+ -++.. .|+.. + ... .......++.+++...++.++.+|++|++.
T Consensus 164 ~~~~~~~~~~~~v~~~~~~--g~~~~~-d~~tg~~~w~~~--~---~~~-~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 164 DINGSPVISDGRVYVSSGD--GRVVAV-DLATGEKLWSKP--I---SGI-YSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp TEEEEEECCTTEEEEECCT--SSEEEE-ETTTTEEEEEEC--S---S-E-CECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred ccccceEEECCEEEEEcCC--CeEEEE-ECCCCCEEEEec--C---CCc-cCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 0123333346766665554 223444 44442 36222 3 111 111223444556655688999999999975
Q ss_pred EE
Q 036621 333 RD 334 (376)
Q Consensus 333 ~~ 334 (376)
..
T Consensus 235 ~W 236 (238)
T PF13360_consen 235 VW 236 (238)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 80
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=69.23 E-value=1e+02 Score=28.87 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=54.9
Q ss_pred ceeEeCceEEEEecccCCCCceEEEEEEcCccc--eeeecCCCCCCCCCceEEEEECCeEEEEEEecCCCEEEEEEecC-
Q 036621 210 ERTYFDGAFYWLLKLENDNDSYVILSFNMADEK--FQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRK- 286 (376)
Q Consensus 210 ~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~- 286 (376)
.++..+|.+|.... ...+.+||..+++ |+ .+++..... ..+..++.+++... ...+..+-.+.
T Consensus 60 ~p~v~~~~v~v~~~------~g~v~a~d~~tG~~~W~-~~~~~~~~~----~p~v~~~~v~v~~~---~g~l~ald~~tG 125 (377)
T TIGR03300 60 QPAVAGGKVYAADA------DGTVVALDAETGKRLWR-VDLDERLSG----GVGADGGLVFVGTE---KGEVIALDAEDG 125 (377)
T ss_pred ceEEECCEEEEECC------CCeEEEEEccCCcEeee-ecCCCCccc----ceEEcCCEEEEEcC---CCEEEEEECCCC
Confidence 46788899988764 3479999987654 43 244433221 12333444443332 23344443332
Q ss_pred -CceeeEEEEccCCceeEeEEEeeCCcEEEEecCCEEEEEECCCCCE
Q 036621 287 -KNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGEL 332 (376)
Q Consensus 287 -~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~yd~~~~~~ 332 (376)
..|... + +-.....|. ..++.+++...++.++.+|+++++.
T Consensus 126 ~~~W~~~--~-~~~~~~~p~--v~~~~v~v~~~~g~l~a~d~~tG~~ 167 (377)
T TIGR03300 126 KELWRAK--L-SSEVLSPPL--VANGLVVVRTNDGRLTALDAATGER 167 (377)
T ss_pred cEeeeec--c-CceeecCCE--EECCEEEEECCCCeEEEEEcCCCce
Confidence 456432 1 111111122 1345666666678899999988753
No 81
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=68.85 E-value=18 Score=20.08 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=19.3
Q ss_pred eCCcEEEEecCCEEEEEECCCCCEE
Q 036621 309 KKGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 309 ~~~~l~~~~~~~~~~~yd~~~~~~~ 333 (376)
.++.+++...++.++++|.++++..
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEE
Confidence 4456777777889999999988754
No 82
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=68.60 E-value=36 Score=30.30 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=60.2
Q ss_pred ceEEEEEEcCccceeeecCCCCCCCCCceEEEEE-CCeEEEEEEecCCCEEEEEEecC-CceeeEEEEccCCceeEeEEE
Q 036621 230 SYVILSFNMADEKFQEIQGPCILESSLDVTLGIY-YQSLSLLILDNVDHCFKIWVMRK-KNWIKQLTVGPFIGIFQPLLF 307 (376)
Q Consensus 230 ~~~il~fD~~~~~~~~i~~P~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~l~iW~l~~-~~W~~~~~i~~~~~~~~~~~~ 307 (376)
...+-++|+.+-+-... .|.+. ++...+.++ ||.||..+.. +.++-+|-|++ +. .+.. ........+++
T Consensus 171 DktvKvWnl~~~~l~~~-~~gh~--~~v~t~~vSpDGslcasGgk--dg~~~LwdL~~~k~---lysl-~a~~~v~sl~f 241 (315)
T KOG0279|consen 171 DKTVKVWNLRNCQLRTT-FIGHS--GYVNTVTVSPDGSLCASGGK--DGEAMLWDLNEGKN---LYSL-EAFDIVNSLCF 241 (315)
T ss_pred CceEEEEccCCcchhhc-ccccc--ccEEEEEECCCCCEEecCCC--CceEEEEEccCCce---eEec-cCCCeEeeEEe
Confidence 44677777777543222 22221 234555555 8999999777 88999999999 33 4555 33333556677
Q ss_pred eeCCcEEEEecCCEEEEEECCCCC
Q 036621 308 WKKGAFFVESNSSQLLLYEPGTGE 331 (376)
Q Consensus 308 ~~~~~l~~~~~~~~~~~yd~~~~~ 331 (376)
..+.-.+....+..+-++|++++.
T Consensus 242 spnrywL~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 242 SPNRYWLCAATATSIKIWDLESKA 265 (315)
T ss_pred cCCceeEeeccCCceEEEeccchh
Confidence 776655666666778899998874
No 83
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=67.77 E-value=1.1e+02 Score=28.58 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=58.9
Q ss_pred eEEEEEEcCccceeeecCCCCCCCCCceEEEEECCeEEEEEEecCC--C------EEEEEEec--------CCceeeEEE
Q 036621 231 YVILSFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVD--H------CFKIWVMR--------KKNWIKQLT 294 (376)
Q Consensus 231 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~--~------~l~iW~l~--------~~~W~~~~~ 294 (376)
...+.||.++...... |.-.........+..+|+|+++...... . .++.-... ...|.-..
T Consensus 86 ~~t~vyDt~t~av~~~--P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~- 162 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATG--PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS- 162 (342)
T ss_pred CCeEEEECCCCeEecc--CCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-
Confidence 4689999888877644 4322222234444558889999883211 1 55555433 14444433
Q ss_pred Ec--cCCce-------eEeEEEeeCCcEEEEecCC--EEEEEECCCCCEEEEEE
Q 036621 295 VG--PFIGI-------FQPLLFWKKGAFFVESNSS--QLLLYEPGTGELRDFEL 337 (376)
Q Consensus 295 i~--~~~~~-------~~~~~~~~~~~l~~~~~~~--~~~~yd~~~~~~~~v~~ 337 (376)
+. |+... ..-.++.++..|++...+. ..+.||.++.+|++++-
T Consensus 163 LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 163 LPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred CCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccc
Confidence 31 22111 1122333234577756555 79999999999999854
No 84
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=67.63 E-value=91 Score=27.78 Aligned_cols=106 Identities=18% Similarity=0.108 Sum_probs=65.9
Q ss_pred eCceEEEEecccCCCCceEEEEEEcCcccee-eecCCCCCCCCCceEEEEECCeEEEEEEecCCCEEEEEEecCCceeeE
Q 036621 214 FDGAFYWLLKLENDNDSYVILSFNMADEKFQ-EIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQ 292 (376)
Q Consensus 214 ~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~~~W~~~ 292 (376)
-+|.+|=-++.. ....|..+|+.+++.. ..++|...- .-.++..+++|+.++.. ....-++-. ....++
T Consensus 54 ~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~F---gEGit~~~d~l~qLTWk--~~~~f~yd~--~tl~~~ 123 (264)
T PF05096_consen 54 DDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYF---GEGITILGDKLYQLTWK--EGTGFVYDP--NTLKKI 123 (264)
T ss_dssp ETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT-----EEEEEEETTEEEEEESS--SSEEEEEET--TTTEEE
T ss_pred CCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCcccc---ceeEEEECCEEEEEEec--CCeEEEEcc--ccceEE
Confidence 356777655543 4678999999998775 458887653 45678889999999986 444444443 445666
Q ss_pred EEEccCCceeEeEEEeeCCcEEEEecCCEEEEEECCCCC
Q 036621 293 LTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGE 331 (376)
Q Consensus 293 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~yd~~~~~ 331 (376)
.++ +++.-..-++ ..+..+++..+..++...||++-+
T Consensus 124 ~~~-~y~~EGWGLt-~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 124 GTF-PYPGEGWGLT-SDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EEE-E-SSS--EEE-ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred EEE-ecCCcceEEE-cCCCEEEEECCccceEEECCcccc
Confidence 666 5543222233 233457777778899999999854
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=67.63 E-value=1.4e+02 Score=30.66 Aligned_cols=51 Identities=10% Similarity=0.217 Sum_probs=39.9
Q ss_pred ceeceEEEecCCCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEE
Q 036621 107 LYCGIVFIEGLNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVL 167 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~ 167 (376)
|-|++||-..-+..+-+|+|-++++...-.-+ ++ ..+..|+|.+++|-|=.
T Consensus 378 SKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn-----df-----VTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 378 SKNNFLLSSSMDKTVRLWHPGRKECLKVFSHN-----DF-----VTCVAFNPVDDRYFISG 428 (712)
T ss_pred ccCCeeEeccccccEEeecCCCcceeeEEecC-----Ce-----eEEEEecccCCCcEeec
Confidence 67999998887889999999999998764332 22 56888889988877654
No 86
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=67.05 E-value=53 Score=31.16 Aligned_cols=135 Identities=16% Similarity=0.242 Sum_probs=69.8
Q ss_pred eceEEEecC-----CCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccc
Q 036621 109 CGIVFIEGL-----NNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFS 183 (376)
Q Consensus 109 ~Gll~~~~~-----~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 183 (376)
+.||+++-. .-+++|+|..|++..++.........-+-...-.+.-||--.++.+|++-...
T Consensus 238 G~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~~------------- 304 (448)
T PF12458_consen 238 GNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTDM------------- 304 (448)
T ss_pred CcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeecccC-------------
Confidence 556677652 23899999999999888755532110000000012233333445555544311
Q ss_pred eEEEEEcCCCceEeccCCCc--cccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeeecCCCCCCCCCceEEE
Q 036621 184 LVAVYTLRTNSWKNLKPIDY--TMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLG 261 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~~~p~--~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~l~ 261 (376)
. +|-+ ... +-.-+..+|..-.... ....++.||+-+.+ +.-|-.+.. . -.
T Consensus 305 ---------~------~l~F~r~vr----SPNGEDvLYvF~~~~~--g~~~Ll~YN~I~k~---v~tPi~chG---~-al 356 (448)
T PF12458_consen 305 ---------D------GLEFERKVR----SPNGEDVLYVFYAREE--GRYLLLPYNLIRKE---VATPIICHG---Y-AL 356 (448)
T ss_pred ---------C------CceEEEEec----CCCCceEEEEEEECCC--CcEEEEechhhhhh---hcCCeeccc---e-eE
Confidence 0 1111 011 1111336777765543 46788999987755 333332221 1 12
Q ss_pred EECCeEEEEEEe-c---CCCEEEEEEe
Q 036621 262 IYYQSLSLLILD-N---VDHCFKIWVM 284 (376)
Q Consensus 262 ~~~G~L~~~~~~-~---~~~~l~iW~l 284 (376)
--+|+|+++... . ...-|+||+.
T Consensus 357 f~DG~l~~fra~~~EptrvHp~QiWqT 383 (448)
T PF12458_consen 357 FEDGRLVYFRAEGDEPTRVHPMQIWQT 383 (448)
T ss_pred ecCCEEEEEecCCCCcceeccceeecC
Confidence 338999998884 2 2356788985
No 87
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=66.88 E-value=81 Score=26.92 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=70.6
Q ss_pred eEEEEEcCCC--ceEeccCCCccccCC-cceeEeCceEEEEecccCCCCceEEEEEEcCcccee-eecCCCCCCCCCceE
Q 036621 184 LVAVYTLRTN--SWKNLKPIDYTMRLS-SERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQ-EIQGPCILESSLDVT 259 (376)
Q Consensus 184 ~~~vyss~t~--~W~~~~~~p~~~~~~-~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~ 259 (376)
.+..++..++ .|+.--.-. .... ...+.-+|.+|... ....|.++|..+.+-. ...++..... .
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~~~~v~~~~------~~~~l~~~d~~tG~~~W~~~~~~~~~~---~- 71 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPG--IGGPVATAVPDGGRVYVAS------GDGNLYALDAKTGKVLWRFDLPGPISG---A- 71 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSS--CSSEEETEEEETTEEEEEE------TTSEEEEEETTTSEEEEEEECSSCGGS---G-
T ss_pred EEEEEECCCCCEEEEEECCCC--CCCccceEEEeCCEEEEEc------CCCEEEEEECCCCCEEEEeeccccccc---e-
Confidence 4566666554 477632100 1110 11445788888874 3569999998665432 2344444332 1
Q ss_pred EEEECCeEEEEEEecCCCEEEEEEecC--Cceee-EEEEccCCceeEeEEEeeCCcEEEEecCCEEEEEECCCCCE
Q 036621 260 LGIYYQSLSLLILDNVDHCFKIWVMRK--KNWIK-QLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGEL 332 (376)
Q Consensus 260 l~~~~G~L~~~~~~~~~~~l~iW~l~~--~~W~~-~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~yd~~~~~~ 332 (376)
....+|.+++... +..+..+-.+. ..|.. ...-++............++.+++...++.++.+|+++++.
T Consensus 72 ~~~~~~~v~v~~~---~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 72 PVVDGGRVYVGTS---DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp EEEETTEEEEEET---TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE
T ss_pred eeecccccccccc---eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE
Confidence 3566777776663 23333333333 77884 33221112112222222345566666688999999998875
No 88
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=66.24 E-value=7.2 Score=37.48 Aligned_cols=141 Identities=12% Similarity=0.125 Sum_probs=83.2
Q ss_pred CCceEeccCCC----c-----cccCCcceeEeCc--eEEEEecccCCCCceEEEEEEcCccceeeec----CCCCCCCCC
Q 036621 192 TNSWKNLKPID----Y-----TMRLSSERTYFDG--AFYWLLKLENDNDSYVILSFNMADEKFQEIQ----GPCILESSL 256 (376)
Q Consensus 192 t~~W~~~~~~p----~-----~~~~~~~~v~~~G--~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~----~P~~~~~~~ 256 (376)
+-.|.++..-. . ..+..+..|+-.| ++|..++-+.-..-.-.-.|+...+.|+.+. .|..+..+
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH- 316 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCH- 316 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhh-
Confidence 35788776221 1 1222267888888 9998887543222334567888999999983 45544432
Q ss_pred ceEEEEECCeEEEEEEe-------cCCCEEEEEEecC--CceeeEEEEccCCce-------eEeEEEeeCCcEEEEecC-
Q 036621 257 DVTLGIYYQSLSLLILD-------NVDHCFKIWVMRK--KNWIKQLTVGPFIGI-------FQPLLFWKKGAFFVESNS- 319 (376)
Q Consensus 257 ~~~l~~~~G~L~~~~~~-------~~~~~l~iW~l~~--~~W~~~~~i~~~~~~-------~~~~~~~~~~~l~~~~~~- 319 (376)
...+-++..+|++++.. ..+..-++|+.+. ..|+... + +.... -.-.++..+..++.+.++
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls-~-dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLS-E-DTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEec-c-cccccCCcceeecceeeEecCcceEEEecCe
Confidence 22233345577777662 1345668999988 8998864 2 11111 222333443434333321
Q ss_pred ---------CEEEEEECCCCCEEEE
Q 036621 320 ---------SQLLLYEPGTGELRDF 335 (376)
Q Consensus 320 ---------~~~~~yd~~~~~~~~v 335 (376)
+++++||.+...|+.+
T Consensus 395 ~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 395 ILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred eccCCCccccceEEEecCCccHHHH
Confidence 3599999999988754
No 89
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.76 E-value=95 Score=27.30 Aligned_cols=81 Identities=16% Similarity=0.313 Sum_probs=49.1
Q ss_pred CCEEEEEEecCCceeeEEEEccCCce--------------eEeEEEeeCCcEEEEecCCEEEEEECCCCCEEEEEEe---
Q 036621 276 DHCFKIWVMRKKNWIKQLTVGPFIGI--------------FQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFELE--- 338 (376)
Q Consensus 276 ~~~l~iW~l~~~~W~~~~~i~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~yd~~~~~~~~v~~~--- 338 (376)
+..+.||..++.+|.+.+++.-.... ..+...+.+|.+++... +.+...|+.--..
T Consensus 184 Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~-------~~e~e~wk~tll~~f~ 256 (299)
T KOG1332|consen 184 DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK-------DEEYEPWKKTLLEEFP 256 (299)
T ss_pred ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe-------cCccCcccccccccCC
Confidence 78899999999999988776322221 22222334444444332 2334455543333
Q ss_pred -eceeEEEEeeccccccCCCCceeee
Q 036621 339 -CCWFSVYIYTESLIPLKGGDGVFDF 363 (376)
Q Consensus 339 -~~~~~~~~y~~sl~s~~~~~~~~~~ 363 (376)
..|.-.+...-+++++..|+..+-+
T Consensus 257 ~~~w~vSWS~sGn~LaVs~GdNkvtl 282 (299)
T KOG1332|consen 257 DVVWRVSWSLSGNILAVSGGDNKVTL 282 (299)
T ss_pred cceEEEEEeccccEEEEecCCcEEEE
Confidence 3466677888888888888877654
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=65.62 E-value=1.3e+02 Score=28.82 Aligned_cols=199 Identities=17% Similarity=0.125 Sum_probs=100.9
Q ss_pred ccccccceeceEEEecC-CCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCC---------CeEEEEEEE
Q 036621 101 LGSFKGLYCGIVFIEGL-NNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTK---------DYKVVLILT 170 (376)
Q Consensus 101 ~~~~~~s~~Gll~~~~~-~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~---------~ykvv~~~~ 170 (376)
...+..|++|-.+...+ ...+.||++-|++.+.--.- .... ..++++-..++ .-|+..+..
T Consensus 205 il~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g---hr~~------V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKG---HRGA------VSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred eEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccc---cccc------eeeeeeecCccceeeeecCCceEEEehhH
Confidence 34566688999988875 45677999999998865111 1111 23444422221 223333211
Q ss_pred -EecCC--C--------CCCcccceEEEEEcC-C-CceEeccCCCcccc---CCcceeEeCceEEEEecccCCCCceEEE
Q 036621 171 -LWDEK--R--------DSSCAFSLVAVYTLR-T-NSWKNLKPIDYTMR---LSSERTYFDGAFYWLLKLENDNDSYVIL 234 (376)
Q Consensus 171 -~~~~~--~--------~~~~~~~~~~vyss~-t-~~W~~~~~~p~~~~---~~~~~v~~~G~lYwl~~~~~~~~~~~il 234 (376)
.|... + +....+..+-|+-.. | .-|+..+.-.-.+. .+-.+|.+=..-|++.+. ..+.|-
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGS----dnG~Ia 351 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGS----DNGSIA 351 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeecc----CCceEE
Confidence 00000 0 000011233444221 2 45776441111111 112234443444555544 244566
Q ss_pred EEEcCccceeee-cCCCCCCCC--------CceEEEEECCe-EEEEEEecCCCEEEEEEecC--CceeeEEEEccCCcee
Q 036621 235 SFNMADEKFQEI-QGPCILESS--------LDVTLGIYYQS-LSLLILDNVDHCFKIWVMRK--KNWIKQLTVGPFIGIF 302 (376)
Q Consensus 235 ~fD~~~~~~~~i-~~P~~~~~~--------~~~~l~~~~G~-L~~~~~~~~~~~l~iW~l~~--~~W~~~~~i~~~~~~~ 302 (376)
-+++.+.+---+ +.+.+.... +...|+++.|. |...+.. ...+.+|+..+ ..=..++.+ ++..+.
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~--~G~vrLW~i~~g~r~i~~l~~l-s~~GfV 428 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW--SGCVRLWKIEDGLRAINLLYSL-SLVGFV 428 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCC--CCceEEEEecCCccccceeeec-ccccEE
Confidence 666655543222 322222111 34567777766 5555555 78999999999 466677777 777767
Q ss_pred EeEEEeeCCcEEE
Q 036621 303 QPLLFWKKGAFFV 315 (376)
Q Consensus 303 ~~~~~~~~~~l~~ 315 (376)
.-+++..+|+-++
T Consensus 429 Nsl~f~~sgk~iv 441 (479)
T KOG0299|consen 429 NSLAFSNSGKRIV 441 (479)
T ss_pred EEEEEccCCCEEE
Confidence 7777777777443
No 91
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=65.37 E-value=98 Score=27.91 Aligned_cols=104 Identities=9% Similarity=0.136 Sum_probs=62.8
Q ss_pred ceEEEEEcCCCceEecc-CCCc-----cccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeeecC-C-CCCCC
Q 036621 183 SLVAVYTLRTNSWKNLK-PIDY-----TMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQG-P-CILES 254 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~-~~p~-----~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~-P-~~~~~ 254 (376)
..+.+|+..+.+|.... .+.. .|-. ..-+++.|.+-.-.. ....+..||+.+.+|+.+.. . .....
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~-----~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGT-----NSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCC-----CceeEEEEecCCCeeeecCCcccccCCC
Confidence 68999999999999887 4332 2333 446777776654432 25689999999999988744 2 11111
Q ss_pred CCceEEEE--ECC-eEEEEEEecCCCEEEEEEecCCceeeEEE
Q 036621 255 SLDVTLGI--YYQ-SLSLLILDNVDHCFKIWVMRKKNWIKQLT 294 (376)
Q Consensus 255 ~~~~~l~~--~~G-~L~~~~~~~~~~~l~iW~l~~~~W~~~~~ 294 (376)
. ...+.. .++ ++.+.... ....-.|...+...|..+..
T Consensus 90 p-v~a~~~~~~d~~~~~~aG~~-~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 90 P-VTALTFISNDGSNFWVAGRS-ANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred c-EEEEEeeccCCceEEEecee-cCCCceEEEEcCCceEeccc
Confidence 1 112222 233 35555552 23333444446799998865
No 92
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=64.57 E-value=1.2e+02 Score=28.09 Aligned_cols=115 Identities=15% Similarity=0.190 Sum_probs=70.2
Q ss_pred CceEEEEecccCCCCceEEEEEEcCccc--eee---ecCCCCCCCCCceEEEEE-CCe-EEEEEEecCCCEEEEEEecC-
Q 036621 215 DGAFYWLLKLENDNDSYVILSFNMADEK--FQE---IQGPCILESSLDVTLGIY-YQS-LSLLILDNVDHCFKIWVMRK- 286 (376)
Q Consensus 215 ~G~lYwl~~~~~~~~~~~il~fD~~~~~--~~~---i~~P~~~~~~~~~~l~~~-~G~-L~~~~~~~~~~~l~iW~l~~- 286 (376)
+|...|.... ....|..|+++.+. ... +.+|.... ...++.. +|+ ++++... ...+.++.++.
T Consensus 154 dg~~v~v~dl----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~G---PRh~~f~pdg~~~Yv~~e~--s~~v~v~~~~~~ 224 (345)
T PF10282_consen 154 DGRFVYVPDL----GADRVYVYDIDDDTGKLTPVDSIKVPPGSG---PRHLAFSPDGKYAYVVNEL--SNTVSVFDYDPS 224 (345)
T ss_dssp TSSEEEEEET----TTTEEEEEEE-TTS-TEEEEEEEECSTTSS---EEEEEE-TTSSEEEEEETT--TTEEEEEEEETT
T ss_pred CCCEEEEEec----CCCEEEEEEEeCCCceEEEeeccccccCCC---CcEEEEcCCcCEEEEecCC--CCcEEEEeeccc
Confidence 5666666655 35678888887665 533 46666654 2344443 555 4555444 78899999983
Q ss_pred -CceeeEEEEccCCc------eeEeEEEeeCCcEEEEec--CCEEEEEEC--CCCCEEEEEEe
Q 036621 287 -KNWIKQLTVGPFIG------IFQPLLFWKKGAFFVESN--SSQLLLYEP--GTGELRDFELE 338 (376)
Q Consensus 287 -~~W~~~~~i~~~~~------~~~~~~~~~~~~l~~~~~--~~~~~~yd~--~~~~~~~v~~~ 338 (376)
..++.+.++..++. ...-+.+..+|+.++..+ ...+.+|++ ++++++.+...
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~ 287 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV 287 (345)
T ss_dssp TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE
T ss_pred CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE
Confidence 77888777732211 134466677788655543 456788876 66788888653
No 93
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=62.32 E-value=20 Score=26.92 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=29.4
Q ss_pred CeEEEEecCcc-cceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEE
Q 036621 119 NRITLWNIATR-ESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLI 168 (376)
Q Consensus 119 ~~~~v~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~ 168 (376)
..+.++||.|+ .|+..-+. . ..+.+-+|+..+.|+||.+
T Consensus 11 A~V~~yd~~tKk~WvPs~~~-----~------~~V~~y~~~~~ntfRIi~~ 50 (111)
T cd01206 11 AHVFQIDPKTKKNWIPASKH-----A------VTVSYFYDSTRNVYRIISV 50 (111)
T ss_pred eEEEEECCCCcceeEeCCCC-----c------eeEEEEecCCCcEEEEEEe
Confidence 46789999996 77744321 1 1578889999999999997
No 94
>PF13013 F-box-like_2: F-box-like domain
Probab=61.89 E-value=4.3 Score=30.73 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=24.6
Q ss_pred CCCCCcHHHHHHHHccCCccccccccccch
Q 036621 5 GNDDSPEDITIEILSRLPVKSLIRLRCVCK 34 (376)
Q Consensus 5 ~~~~LP~Dll~~IL~rLp~~~l~r~r~VcK 34 (376)
...+||+||+..|+..-..+.+...-..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 456899999999999999988866655555
No 95
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=61.78 E-value=40 Score=32.59 Aligned_cols=102 Identities=7% Similarity=0.035 Sum_probs=60.7
Q ss_pred CceEEEEEEcCcc--ceeeecCCCCCCCCC-ceEEEEECCeEEEEEEecCCCEEEEEEecCCceeeEEEEccCCceeEeE
Q 036621 229 DSYVILSFNMADE--KFQEIQGPCILESSL-DVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPL 305 (376)
Q Consensus 229 ~~~~il~fD~~~~--~~~~i~~P~~~~~~~-~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~ 305 (376)
....|-++|+..- ++-+-.+++-..+.+ .....--+|+-.+++.. ..++.||-|....=..+..+..-......+
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe--astlsiWDLAapTprikaeltssapaCyAL 515 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE--ASTLSIWDLAAPTPRIKAELTSSAPACYAL 515 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc--cceeeeeeccCCCcchhhhcCCcchhhhhh
Confidence 4668888998642 332236666655443 23333448888788777 789999999873222222221111113445
Q ss_pred EEeeCCcEEEE-ecCCEEEEEECCCCCE
Q 036621 306 LFWKKGAFFVE-SNSSQLLLYEPGTGEL 332 (376)
Q Consensus 306 ~~~~~~~l~~~-~~~~~~~~yd~~~~~~ 332 (376)
++..+.++.|. +.++++.+||+.++.+
T Consensus 516 a~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 516 AISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred hcCCccceeeeeccCCcEEEEEccccee
Confidence 56667777554 4477788888887654
No 96
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=59.86 E-value=22 Score=20.87 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=17.8
Q ss_pred cEEEEecCCEEEEEECCCCCEEE
Q 036621 312 AFFVESNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 312 ~l~~~~~~~~~~~yd~~~~~~~~ 334 (376)
.+++...++.++++|.+|++...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEE
Confidence 45666667899999999997653
No 97
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=59.81 E-value=1.4e+02 Score=27.24 Aligned_cols=116 Identities=9% Similarity=0.101 Sum_probs=63.7
Q ss_pred CceEEEEecccCCCCceEEEEEEcC--ccceeee----cCCCCCCCC-CceEEEEE-CCe-EEEEEEecCCCEEEEEEec
Q 036621 215 DGAFYWLLKLENDNDSYVILSFNMA--DEKFQEI----QGPCILESS-LDVTLGIY-YQS-LSLLILDNVDHCFKIWVMR 285 (376)
Q Consensus 215 ~G~lYwl~~~~~~~~~~~il~fD~~--~~~~~~i----~~P~~~~~~-~~~~l~~~-~G~-L~~~~~~~~~~~l~iW~l~ 285 (376)
+|...+.... ....|.+||+. ++++..+ ..|...... +...+... +|+ |++.... ...+.+|.++
T Consensus 185 dg~~lyv~~~----~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~--~~~I~v~~i~ 258 (330)
T PRK11028 185 NQQYAYCVNE----LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT--ASLISVFSVS 258 (330)
T ss_pred CCCEEEEEec----CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC--CCeEEEEEEe
Confidence 5554444433 25688888886 3454433 234332111 11122222 565 4444223 6789999987
Q ss_pred C--CceeeEEEEccCCceeEeEEEeeCCcEEEEec--CCEEEEE--ECCCCCEEEEEE
Q 036621 286 K--KNWIKQLTVGPFIGIFQPLLFWKKGAFFVESN--SSQLLLY--EPGTGELRDFEL 337 (376)
Q Consensus 286 ~--~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y--d~~~~~~~~v~~ 337 (376)
. ..++.+..+ +.....+-+.+..+|+.++..+ ++.+.+| |.+++.++.+..
T Consensus 259 ~~~~~~~~~~~~-~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~ 315 (330)
T PRK11028 259 EDGSVLSFEGHQ-PTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGR 315 (330)
T ss_pred CCCCeEEEeEEE-eccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccc
Confidence 6 577777777 4332233456667777655443 4556666 556777877653
No 98
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=57.59 E-value=1.7e+02 Score=27.59 Aligned_cols=183 Identities=13% Similarity=0.080 Sum_probs=94.6
Q ss_pred eeceEEEecCCCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEE
Q 036621 108 YCGIVFIEGLNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAV 187 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
.+|.|.+......++.+|+.||+.+.--..+......+ .+ . + . +|+.. . .+ -.+.-
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP-----~v--~-~----~-~v~v~-~---~~-------g~l~a 174 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRP-----VV--S-D----G-LVLVH-T---SN-------GMLQA 174 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCC-----EE--E-C----C-EEEEE-C---CC-------CEEEE
Confidence 46777777667789999999988443111111100110 11 1 1 1 22221 1 11 35666
Q ss_pred EEcCCC--ceEeccCCCc--cccCCcceeEeCceEEEEecccCCCCceEEEEEEcCcc--ceee-ecCCCCCCC-----C
Q 036621 188 YTLRTN--SWKNLKPIDY--TMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADE--KFQE-IQGPCILES-----S 255 (376)
Q Consensus 188 yss~t~--~W~~~~~~p~--~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~--~~~~-i~~P~~~~~-----~ 255 (376)
++..++ .|+.-...+. .... ..++..+|.+|+-.. ...+.++|..+. .|+. +..|..... .
T Consensus 175 ld~~tG~~~W~~~~~~~~~~~~~~-~sP~v~~~~v~~~~~------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~ 247 (394)
T PRK11138 175 LNESDGAVKWTVNLDVPSLTLRGE-SAPATAFGGAIVGGD------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVD 247 (394)
T ss_pred EEccCCCEeeeecCCCCcccccCC-CCCEEECCEEEEEcC------CCEEEEEEccCChhhheeccccCCCccchhcccc
Confidence 776654 4877543332 1222 446778888888653 347899998775 4542 222321110 0
Q ss_pred CceEEEEECCeEEEEEEecCCCEEEEEEecC--CceeeEEEEccCCceeEeEEEeeCCcEEEEecCCEEEEEECCCCC
Q 036621 256 LDVTLGIYYQSLSLLILDNVDHCFKIWVMRK--KNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGE 331 (376)
Q Consensus 256 ~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~yd~~~~~ 331 (376)
....-+..+|.|++.... ..+.....+. ..|+.... .. ..+ +..++.||+...++.++.+|.++++
T Consensus 248 ~~~sP~v~~~~vy~~~~~---g~l~ald~~tG~~~W~~~~~--~~---~~~--~~~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 248 VDTTPVVVGGVVYALAYN---GNLVALDLRSGQIVWKREYG--SV---NDF--AVDGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred cCCCcEEECCEEEEEEcC---CeEEEEECCCCCEEEeecCC--Cc---cCc--EEECCEEEEEcCCCeEEEEECCCCc
Confidence 011123346666665542 3333333333 55665321 11 111 2345678887778899999999875
No 99
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=55.58 E-value=1.8e+02 Score=27.19 Aligned_cols=131 Identities=15% Similarity=0.053 Sum_probs=71.0
Q ss_pred eEEEEEcCCCceEecc-CCC-ccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccc--eeeecCC--CCCCCCCc
Q 036621 184 LVAVYTLRTNSWKNLK-PID-YTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEK--FQEIQGP--CILESSLD 257 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~-~~p-~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~--~~~i~~P--~~~~~~~~ 257 (376)
.......++..|.... ... ..+.. ...++.+|++|..... ..|.++|.++.+ |+.-... ....
T Consensus 36 ~~~~~~~g~~~W~~~~~~~~~~~~~~-~~~~~~dg~v~~~~~~------G~i~A~d~~~g~~~W~~~~~~~~~~~~---- 104 (370)
T COG1520 36 AVANNTSGTLLWSVSLGSGGGGIYAG-PAPADGDGTVYVGTRD------GNIFALNPDTGLVKWSYPLLGAVAQLS---- 104 (370)
T ss_pred EEEcccCcceeeeeecccCccceEec-cccEeeCCeEEEecCC------CcEEEEeCCCCcEEecccCcCcceecc----
Confidence 4455555667786432 211 13332 1159999999998533 389999998876 6554333 1111
Q ss_pred eEEEEECCeEEEEEEecCCCEEEEEEecC----CceeeEEEEccCCceeEeEEEeeCCcEEEEecCCEEEEEECCCCCEE
Q 036621 258 VTLGIYYQSLSLLILDNVDHCFKIWVMRK----KNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 258 ~~l~~~~G~L~~~~~~~~~~~l~iW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~yd~~~~~~~ 333 (376)
.-+...+|+|++-.... .++.++. ..|.....- . ..... -.+..++.+++...++.++..|.+|++..
T Consensus 105 ~~~~~~~G~i~~g~~~g-----~~y~ld~~~G~~~W~~~~~~-~-~~~~~-~~v~~~~~v~~~s~~g~~~al~~~tG~~~ 176 (370)
T COG1520 105 GPILGSDGKIYVGSWDG-----KLYALDASTGTLVWSRNVGG-S-PYYAS-PPVVGDGTVYVGTDDGHLYALNADTGTLK 176 (370)
T ss_pred CceEEeCCeEEEecccc-----eEEEEECCCCcEEEEEecCC-C-eEEec-CcEEcCcEEEEecCCCeEEEEEccCCcEE
Confidence 11223378766555542 5666665 445443322 1 00111 12233455555546788999999877653
No 100
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=55.34 E-value=8.5 Score=35.21 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=32.2
Q ss_pred CCCCCcHHHHHHHHccCCc--------cccccccccchhhHhhcCC
Q 036621 5 GNDDSPEDITIEILSRLPV--------KSLIRLRCVCKSWYALIKD 42 (376)
Q Consensus 5 ~~~~LP~Dll~~IL~rLp~--------~~l~r~r~VcK~W~~lis~ 42 (376)
.++.||.++|.+|+.|..- ++.+.+..|||.|+.+.++
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 4568999999999999864 3688999999999997654
No 101
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.58 E-value=1.8e+02 Score=26.60 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=64.9
Q ss_pred cceeEeCceEEEEecccCCCCceEEEEEEcCccceeee-cCCCCCCCCCceEEEEECCeE---EEEEEecCCCEEEEEEe
Q 036621 209 SERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEI-QGPCILESSLDVTLGIYYQSL---SLLILDNVDHCFKIWVM 284 (376)
Q Consensus 209 ~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~l~~~~G~L---~~~~~~~~~~~l~iW~l 284 (376)
-.++.++|..-.-++ ....|..||+.+..=..+ -.|.+ .+.-....+.+ .++... .++.|.||.-
T Consensus 46 itavAVs~~~~aSGs-----sDetI~IYDm~k~~qlg~ll~Hag-----sitaL~F~~~~S~shLlS~s-dDG~i~iw~~ 114 (362)
T KOG0294|consen 46 ITALAVSGPYVASGS-----SDETIHIYDMRKRKQLGILLSHAG-----SITALKFYPPLSKSHLLSGS-DDGHIIIWRV 114 (362)
T ss_pred eeEEEecceeEeccC-----CCCcEEEEeccchhhhcceecccc-----ceEEEEecCCcchhheeeec-CCCcEEEEEc
Confidence 447777776544333 356899999987653332 22221 22223333433 444442 2788999977
Q ss_pred cCCceeeEEEEccCCceeEeEEEeeCCcEEEEe-cCCEEEEEECCCCCEEEE
Q 036621 285 RKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVES-NSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~yd~~~~~~~~v 335 (376)
+ .|..+.++.+...-..-+.++..+++-+.. +|..+-.+|+-+++-..+
T Consensus 115 ~--~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v 164 (362)
T KOG0294|consen 115 G--SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV 164 (362)
T ss_pred C--CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee
Confidence 4 588888774444334556677777775543 345566666665544433
No 102
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=52.76 E-value=27 Score=20.58 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=15.7
Q ss_pred eCCcEEEEecCCEEEEEECCC
Q 036621 309 KKGAFFVESNSSQLLLYEPGT 329 (376)
Q Consensus 309 ~~~~l~~~~~~~~~~~yd~~~ 329 (376)
.++.||+...++.++++|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456778888889999999875
No 103
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=51.80 E-value=1.3e+02 Score=27.22 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=44.6
Q ss_pred CCeEEEEEEecCCCEEEEEEecC-CceeeEEEEccCCceeEeEEEeeCCc-EEEEecCCEEEEEECCCCCEEEEEEe
Q 036621 264 YQSLSLLILDNVDHCFKIWVMRK-KNWIKQLTVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 264 ~G~L~~~~~~~~~~~l~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~yd~~~~~~~~v~~~ 338 (376)
.+.+..+... +.+++||.+++ ..=.-+... .+..-..-++-.++|. ++.-..++.+-.||+.+++...|...
T Consensus 39 ~~~~~~A~SW--D~tVR~wevq~~g~~~~ka~~-~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H 112 (347)
T KOG0647|consen 39 ADNLLAAGSW--DGTVRIWEVQNSGQLVPKAQQ-SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAH 112 (347)
T ss_pred cCceEEeccc--CCceEEEEEecCCcccchhhh-ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeec
Confidence 3444445555 78999999987 222222222 2222122244445554 45555588999999999999998875
No 104
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=50.98 E-value=1.7e+02 Score=25.58 Aligned_cols=179 Identities=12% Similarity=0.037 Sum_probs=82.0
Q ss_pred CCCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEEEEcCCCceE
Q 036621 117 LNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWK 196 (376)
Q Consensus 117 ~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~ 196 (376)
....+.+||+.|++....-... .. ..++.+++.. ++ ++.... .+ ..+.+|+..++...
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~----~~------~~~l~~~~dg-~~-l~~~~~---~~-------~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVG----QR------PRGITLSKDG-KL-LYVCAS---DS-------DTIQVIDLATGEVI 66 (300)
T ss_pred CCCEEEEEECCCCceEEEEECC----CC------CCceEECCCC-CE-EEEEEC---CC-------CeEEEEECCCCcEE
Confidence 4568899999887754422111 11 1234444432 22 222211 11 46778888776543
Q ss_pred eccCCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccce-eeecCCCCCCCCCceEEEE-ECCeEEEEEEec
Q 036621 197 NLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKF-QEIQGPCILESSLDVTLGI-YYQSLSLLILDN 274 (376)
Q Consensus 197 ~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~l~~-~~G~L~~~~~~~ 274 (376)
..-..... .. .-.+.-+|...+.... ....|..+|+.+.+- ..++.+... ..+.. -+|++.++....
T Consensus 67 ~~~~~~~~-~~-~~~~~~~g~~l~~~~~----~~~~l~~~d~~~~~~~~~~~~~~~~-----~~~~~~~dg~~l~~~~~~ 135 (300)
T TIGR03866 67 GTLPSGPD-PE-LFALHPNGKILYIANE----DDNLVTVIDIETRKVLAEIPVGVEP-----EGMAVSPDGKIVVNTSET 135 (300)
T ss_pred EeccCCCC-cc-EEEECCCCCEEEEEcC----CCCeEEEEECCCCeEEeEeeCCCCc-----ceEEECCCCCEEEEEecC
Confidence 31111000 00 1112224543333332 234789999987542 222321111 12222 267666655531
Q ss_pred CCCEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCcEEEEe--cCCEEEEEECCCCCE
Q 036621 275 VDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVES--NSSQLLLYEPGTGEL 332 (376)
Q Consensus 275 ~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~yd~~~~~~ 332 (376)
...+.+|..+. ......+ ........+.+..++..++.. .++.+..||+++++.
T Consensus 136 -~~~~~~~d~~~--~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 136 -TNMAHFIDTKT--YEIVDNV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred -CCeEEEEeCCC--CeEEEEE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 23344444433 2333333 222112224556667655433 267799999998754
No 105
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=49.30 E-value=35 Score=24.79 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=15.1
Q ss_pred CCEEEEEECCCCCEEEEEE
Q 036621 319 SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 319 ~~~~~~yd~~~~~~~~v~~ 337 (376)
.++++.|||+|++.+.+--
T Consensus 36 ~GRll~ydp~t~~~~vl~~ 54 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLD 54 (89)
T ss_dssp -EEEEEEETTTTEEEEEEE
T ss_pred CcCEEEEECCCCeEEEehh
Confidence 3579999999999877644
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=47.86 E-value=3.2e+02 Score=27.84 Aligned_cols=90 Identities=11% Similarity=0.191 Sum_probs=56.5
Q ss_pred CceEEEEEEcCccceeeecCCCCCCCCCceEEE-EECCeEEEEEEecCCCEEEEEEecCCceeeEEEEccCCce-eEeEE
Q 036621 229 DSYVILSFNMADEKFQEIQGPCILESSLDVTLG-IYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGI-FQPLL 306 (376)
Q Consensus 229 ~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~l~-~~~G~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~-~~~~~ 306 (376)
+...|.-.|++.|...++-.... +...+. ..++.+.+.++. +.+++||.-++ .+..| .++.. ..-..
T Consensus 198 NDg~Ir~w~~~ge~l~~~~ghtn----~vYsis~~~~~~~Ivs~gE--DrtlriW~~~e----~~q~I-~lPttsiWsa~ 266 (745)
T KOG0301|consen 198 NDGSIRLWDLDGEVLLEMHGHTN----FVYSISMALSDGLIVSTGE--DRTLRIWKKDE----CVQVI-TLPTTSIWSAK 266 (745)
T ss_pred CCceEEEEeccCceeeeeeccce----EEEEEEecCCCCeEEEecC--CceEEEeecCc----eEEEE-ecCccceEEEE
Confidence 35577777777766555432211 122333 336667777766 89999999873 55555 44432 33355
Q ss_pred EeeCCcEEEEecCCEEEEEECCC
Q 036621 307 FWKKGAFFVESNSSQLLLYEPGT 329 (376)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~yd~~~ 329 (376)
+..+|+|+.-..|+.+.+|-.+.
T Consensus 267 ~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 267 VLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EeeCCCEEEeccCceEEEEEecc
Confidence 56789998888888888886663
No 107
>PF13854 Kelch_5: Kelch motif
Probab=46.73 E-value=54 Score=19.61 Aligned_cols=32 Identities=6% Similarity=0.112 Sum_probs=22.5
Q ss_pred cceeEeCceEEEEecccC--CCCceEEEEEEcCc
Q 036621 209 SERTYFDGAFYWLLKLEN--DNDSYVILSFNMAD 240 (376)
Q Consensus 209 ~~~v~~~G~lYwl~~~~~--~~~~~~il~fD~~~ 240 (376)
.+++.+++.+|..++... ......+..||+.+
T Consensus 8 hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 8 HSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred eEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 668889999999998752 22344677777654
No 108
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=46.54 E-value=3.5e+02 Score=27.96 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=71.0
Q ss_pred ceeEeC--ceEEEEecccCCCCceEEEEEEcCccceeee-cCCCCCCCCCceEE-EEECCeEEEEEEecCCCEEEEEEec
Q 036621 210 ERTYFD--GAFYWLLKLENDNDSYVILSFNMADEKFQEI-QGPCILESSLDVTL-GIYYQSLSLLILDNVDHCFKIWVMR 285 (376)
Q Consensus 210 ~~v~~~--G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~l-~~~~G~L~~~~~~~~~~~l~iW~l~ 285 (376)
.++.+| |-+-..+.- +...|.++++.+++--.+ .-..+.. ..| ..-.|.+.+.... +.+++||..=
T Consensus 439 scvavD~sGelV~AG~~----d~F~IfvWS~qTGqllDiLsGHEgPV----s~l~f~~~~~~LaS~SW--DkTVRiW~if 508 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQ----DSFEIFVWSVQTGQLLDILSGHEGPV----SGLSFSPDGSLLASGSW--DKTVRIWDIF 508 (893)
T ss_pred eEEEEcCCCCEEEeecc----ceEEEEEEEeecCeeeehhcCCCCcc----eeeEEccccCeEEeccc--cceEEEEEee
Confidence 367777 888777765 477899999999887665 2211111 112 2235665444445 7899999764
Q ss_pred CCceeeEEEEccCCceeEeEEEeeCCc-EEEEecCCEEEEEECCCC
Q 036621 286 KKNWIKQLTVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTG 330 (376)
Q Consensus 286 ~~~W~~~~~i~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~yd~~~~ 330 (376)
.+|..+.++ ........+.+..+|+ +-+..-++++-.||.+.+
T Consensus 509 -~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 509 -SSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred -ccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 467777777 5655556666666554 666666788888888754
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=46.53 E-value=2.4e+02 Score=25.95 Aligned_cols=110 Identities=9% Similarity=0.073 Sum_probs=60.2
Q ss_pred eCceEEEEecccCCCCceEEEEEEcCcc-----ceeeecCCCCCCCCCceEEEEE-CCeEEEEEEecCCCEEEEEEecC-
Q 036621 214 FDGAFYWLLKLENDNDSYVILSFNMADE-----KFQEIQGPCILESSLDVTLGIY-YQSLSLLILDNVDHCFKIWVMRK- 286 (376)
Q Consensus 214 ~~G~lYwl~~~~~~~~~~~il~fD~~~~-----~~~~i~~P~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~l~iW~l~~- 286 (376)
-||+-...+.. ...|..||+.+- ++-.+.+|.+ .+++++. .+.-.++...-.+..+.++.+..
T Consensus 96 SdGK~lat~~~-----Dr~Ir~w~~~DF~~~eHr~~R~nve~d-----hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~ 165 (420)
T KOG2096|consen 96 SDGKKLATISG-----DRSIRLWDVRDFENKEHRCIRQNVEYD-----HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKK 165 (420)
T ss_pred CCCceeEEEeC-----CceEEEEecchhhhhhhhHhhccccCC-----CceEEEECCCcceEEEEEccCCEEEEEEeeec
Confidence 35554444432 447777877652 2333455544 2334443 33322222211266777777765
Q ss_pred ---------Ccee-----eEEEEccCCceeEeEEEeeCCcEEEEec-CCEEEEEECCCCCEEEEEEe
Q 036621 287 ---------KNWI-----KQLTVGPFIGIFQPLLFWKKGAFFVESN-SSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 287 ---------~~W~-----~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~yd~~~~~~~~v~~~ 338 (376)
-.|. +++.+ + ..-+++..++++++... +..++.|+++.+.+..|..+
T Consensus 166 ~dG~~~~~~v~~D~~~f~~kh~v-~----~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtn 227 (420)
T KOG2096|consen 166 TDGSGSHHFVHIDNLEFERKHQV-D----IINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTN 227 (420)
T ss_pred ccCCCCcccccccccccchhccc-c----eEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccc
Confidence 1122 22222 1 33367777777766554 67899999999999988764
No 110
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=46.12 E-value=3.3e+02 Score=27.56 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=57.5
Q ss_pred CCeEEEEEEecCCCEEEEEEecCCceeeEEEEccCCce--eEeEEEeeCCc-EEEEecCCEEEEEECCCCCEEEEEEe-e
Q 036621 264 YQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGI--FQPLLFWKKGA-FFVESNSSQLLLYEPGTGELRDFELE-C 339 (376)
Q Consensus 264 ~G~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~--~~~~~~~~~~~-l~~~~~~~~~~~yd~~~~~~~~v~~~-~ 339 (376)
+.+|.++... ...+.+..++...-.....+.+.... ..-+.+..+|+ +......+.+++||+++++.+.+... +
T Consensus 440 ~~k~~~~s~~--~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln 517 (691)
T KOG2048|consen 440 KNKLFLVSKN--IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLN 517 (691)
T ss_pred CceEEEEecc--cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccC
Confidence 4455555534 45566666655443343333222111 33355566776 55556678899999999999887643 1
Q ss_pred ce---eEEEEe-eccccccCCCCceeeeeceeee
Q 036621 340 CW---FSVYIY-TESLIPLKGGDGVFDFDIPWHV 369 (376)
Q Consensus 340 ~~---~~~~~y-~~sl~s~~~~~~~~~~~~~~~~ 369 (376)
.. ..+.++ .++++.-....+..++.+++.-
T Consensus 518 ~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 518 IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred cceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 11 112212 2445544445666777776543
No 111
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=45.06 E-value=2.6e+02 Score=26.02 Aligned_cols=132 Identities=11% Similarity=0.137 Sum_probs=69.1
Q ss_pred eEEEEEcCCC--ceEeccCCCc-cccCCcceeEeCceEEEEecccCCCCceEEEEEEcCcc--ceee-ecCCCCCCC---
Q 036621 184 LVAVYTLRTN--SWKNLKPIDY-TMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADE--KFQE-IQGPCILES--- 254 (376)
Q Consensus 184 ~~~vyss~t~--~W~~~~~~p~-~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~--~~~~-i~~P~~~~~--- 254 (376)
.+..++..++ .|+.....+. .......++..+|.+|.-.. ...+.++|+.++ .|+. +..|.....
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFA------GGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECC------CCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 5666776554 5876442222 11111446777887776442 358999998765 4532 222321110
Q ss_pred --CCceEEEEECCeEEEEEEecCCCEEEEEEecC--CceeeEEEEccCCceeEeEEEeeCCcEEEEecCCEEEEEECCCC
Q 036621 255 --SLDVTLGIYYQSLSLLILDNVDHCFKIWVMRK--KNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTG 330 (376)
Q Consensus 255 --~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~yd~~~~ 330 (376)
.........+|.+++... ...+..+..+. ..|... . . ....|. ..++.+++...++.++.+|.+++
T Consensus 230 ~~~~~~~p~~~~~~vy~~~~---~g~l~a~d~~tG~~~W~~~--~-~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 230 LVDVDGDPVVDGGQVYAVSY---QGRVAALDLRSGRVLWKRD--A-S--SYQGPA--VDDNRLYVTDADGVVVALDRRSG 299 (377)
T ss_pred hhccCCccEEECCEEEEEEc---CCEEEEEECCCCcEEEeec--c-C--CccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence 001112234566665443 34455555544 556553 1 1 111122 23566777777788999999887
Q ss_pred C
Q 036621 331 E 331 (376)
Q Consensus 331 ~ 331 (376)
+
T Consensus 300 ~ 300 (377)
T TIGR03300 300 S 300 (377)
T ss_pred c
Confidence 5
No 112
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=44.50 E-value=2.2e+02 Score=24.90 Aligned_cols=181 Identities=13% Similarity=0.059 Sum_probs=83.7
Q ss_pred cCCCeEEEEecCccccee-cCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEEEEcCCCc
Q 036621 116 GLNNRITLWNIATRESIT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNS 194 (376)
Q Consensus 116 ~~~~~~~v~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~ 194 (376)
.....+.+||+.+++... ++.... ...+.+++..+ +++.... .+ ..+.+|+.++..
T Consensus 50 ~~~~~v~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~g~--~l~~~~~---~~-------~~l~~~d~~~~~ 106 (300)
T TIGR03866 50 SDSDTIQVIDLATGEVIGTLPSGPD-----------PELFALHPNGK--ILYIANE---DD-------NLVTVIDIETRK 106 (300)
T ss_pred CCCCeEEEEECCCCcEEEeccCCCC-----------ccEEEECCCCC--EEEEEcC---CC-------CeEEEEECCCCe
Confidence 356789999999887654 332111 12344554432 2222110 11 367777776642
Q ss_pred eEeccCCCc-cccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceee-ecCCCCCCCCCceEEEE-ECCeEEEEE
Q 036621 195 WKNLKPIDY-TMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQE-IQGPCILESSLDVTLGI-YYQSLSLLI 271 (376)
Q Consensus 195 W~~~~~~p~-~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~l~~-~~G~L~~~~ 271 (376)
= +..++. .... .-.+.-+|.+.+.+.. ....+..+|..+.+... +..+.. ...+.. -+|+..++.
T Consensus 107 ~--~~~~~~~~~~~-~~~~~~dg~~l~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 107 V--LAEIPVGVEPE-GMAVSPDGKIVVNTSE----TTNMAHFIDTKTYEIVDNVLVDQR-----PRFAEFTADGKELWVS 174 (300)
T ss_pred E--EeEeeCCCCcc-eEEECCCCCEEEEEec----CCCeEEEEeCCCCeEEEEEEcCCC-----ccEEEECCCCCEEEEE
Confidence 1 111111 0001 1122235666655543 12346667876654322 221111 112222 256544443
Q ss_pred EecCCCEEEEEEecCCceeeEEEEc-cC-----Cce-eEeEEEeeCCcEEEE-e-cCCEEEEEECCCCCEEE
Q 036621 272 LDNVDHCFKIWVMRKKNWIKQLTVG-PF-----IGI-FQPLLFWKKGAFFVE-S-NSSQLLLYEPGTGELRD 334 (376)
Q Consensus 272 ~~~~~~~l~iW~l~~~~W~~~~~i~-~~-----~~~-~~~~~~~~~~~l~~~-~-~~~~~~~yd~~~~~~~~ 334 (376)
.. ....+.+|-++..+ .+.++. .. ... ..-+.+..+++.++. . .+..+.+||.++.+...
T Consensus 175 ~~-~~~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 175 SE-IGGTVSVIDVATRK--VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred cC-CCCEEEEEEcCcce--eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 31 25789999887632 222220 10 010 112445666765433 2 34579999998876543
No 113
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=43.37 E-value=2.3e+02 Score=24.97 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=60.6
Q ss_pred CceEEEEecccCCCCceEEEEEEcCccceeee-cCCCCCCCCCceEEE--EECCeEEEEEEecCCCEEEEEEecCCceee
Q 036621 215 DGAFYWLLKLENDNDSYVILSFNMADEKFQEI-QGPCILESSLDVTLG--IYYQSLSLLILDNVDHCFKIWVMRKKNWIK 291 (376)
Q Consensus 215 ~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~l~--~~~G~L~~~~~~~~~~~l~iW~l~~~~W~~ 291 (376)
.|.+...++ .+.|...|++++++++. +-..+.. ..++ +.+|.+ +.. .++.+++||-++... .
T Consensus 126 enSi~~AgG------D~~~y~~dlE~G~i~r~~rGHtDYv----H~vv~R~~~~qi--lsG-~EDGtvRvWd~kt~k--~ 190 (325)
T KOG0649|consen 126 ENSILFAGG------DGVIYQVDLEDGRIQREYRGHTDYV----HSVVGRNANGQI--LSG-AEDGTVRVWDTKTQK--H 190 (325)
T ss_pred CCcEEEecC------CeEEEEEEecCCEEEEEEcCCccee----eeeeecccCcce--eec-CCCccEEEEeccccc--e
Confidence 366666553 45899999999999765 4333221 1221 223332 112 237899999998721 1
Q ss_pred EEEEccCCc--e------eEeEEEeeCCcEEEEecCCEEEEEECCCCCEE
Q 036621 292 QLTVGPFIG--I------FQPLLFWKKGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 292 ~~~i~~~~~--~------~~~~~~~~~~~l~~~~~~~~~~~yd~~~~~~~ 333 (376)
+..|++.+. . ..+-++..+.+-+++..+.++-.++++..+-.
T Consensus 191 v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t 240 (325)
T KOG0649|consen 191 VSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSEST 240 (325)
T ss_pred eEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCce
Confidence 223333322 1 33455556667777777778999999876544
No 114
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=41.86 E-value=85 Score=30.08 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=43.3
Q ss_pred EEEEEEecCCCEEEEEEecCCceeeEEEEccCCce-eEeEEEeeCCc-EEEEec-CCEEEEEECCCCCEEEEEE
Q 036621 267 LSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGI-FQPLLFWKKGA-FFVESN-SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 267 L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~-~~~~~~~~~~~-l~~~~~-~~~~~~yd~~~~~~~~v~~ 337 (376)
|.++... +..++|+..+.+.=.++..| -+... ..-.++..+|. .++..+ .+-++.||+++.+..++.-
T Consensus 227 lllvaG~--d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~ 297 (514)
T KOG2055|consen 227 LLLVAGL--DGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP 297 (514)
T ss_pred eEEEecC--CCcEEEEEecCccChhheee-eeccCccceeeecCCCceEEEecccceEEEEeeccccccccccC
Confidence 4444444 67888888887333366666 44432 23345556676 555444 4569999999999988864
No 115
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=41.83 E-value=22 Score=31.44 Aligned_cols=44 Identities=23% Similarity=0.223 Sum_probs=34.0
Q ss_pred cCCCCCCcHHHHHHHHccCCc-cccccccccchhhHhhcCChHHH
Q 036621 3 LLGNDDSPEDITIEILSRLPV-KSLIRLRCVCKSWYALIKDPNFI 46 (376)
Q Consensus 3 ~~~~~~LP~Dll~~IL~rLp~-~~l~r~r~VcK~W~~lis~p~F~ 46 (376)
.....+||.+++.+||.|||= .+|..++.|-..-..++.+...-
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iW 243 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIW 243 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHH
Confidence 345568999999999999997 89998888866666666654443
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.85 E-value=2.9e+02 Score=25.33 Aligned_cols=118 Identities=13% Similarity=0.157 Sum_probs=63.2
Q ss_pred EEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEEEEcCCCceEeccCCCccccCCcceeEeCceE---EEEecccCCCC
Q 036621 153 GFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAF---YWLLKLENDND 229 (376)
Q Consensus 153 ~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~p~~~~~~~~~v~~~G~l---Ywl~~~~~~~~ 229 (376)
-|.|....+.-+-|++..+|...++.. .+++||+...+. ++..+...-.. -.+.-+.+.+ |.+... .
T Consensus 36 lF~~~aH~~sitavAVs~~~~aSGssD---etI~IYDm~k~~--qlg~ll~Hags-itaL~F~~~~S~shLlS~s----d 105 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVSGPYVASGSSD---ETIHIYDMRKRK--QLGILLSHAGS-ITALKFYPPLSKSHLLSGS----D 105 (362)
T ss_pred cccccccccceeEEEecceeEeccCCC---CcEEEEeccchh--hhcceeccccc-eEEEEecCCcchhheeeec----C
Confidence 455555566777777765565554444 489999987642 11111110000 1122222322 444444 4
Q ss_pred ceEEEEEEcCccceeee-cCCCCCCCCCceEEEEE-CCeEEEEEEecCCCEEEEEEecC
Q 036621 230 SYVILSFNMADEKFQEI-QGPCILESSLDVTLGIY-YQSLSLLILDNVDHCFKIWVMRK 286 (376)
Q Consensus 230 ~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~l~iW~l~~ 286 (376)
.+.|..+|... |..+ .+-.+... -..|..- .|+|.+..+. +..+.+|.|..
T Consensus 106 DG~i~iw~~~~--W~~~~slK~H~~~--Vt~lsiHPS~KLALsVg~--D~~lr~WNLV~ 158 (362)
T KOG0294|consen 106 DGHIIIWRVGS--WELLKSLKAHKGQ--VTDLSIHPSGKLALSVGG--DQVLRTWNLVR 158 (362)
T ss_pred CCcEEEEEcCC--eEEeeeecccccc--cceeEecCCCceEEEEcC--Cceeeeehhhc
Confidence 56888887654 5444 22222221 1223322 6888888887 78899998876
No 117
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=40.64 E-value=2.4e+02 Score=24.35 Aligned_cols=109 Identities=13% Similarity=0.128 Sum_probs=68.5
Q ss_pred eeEe--CceEEEEecccCCCCceEEEEEEcCccceeeecCCCCCCCCCceEEEEE--CCeEEEEEEecCCCEEEEEEecC
Q 036621 211 RTYF--DGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLGIY--YQSLSLLILDNVDHCFKIWVMRK 286 (376)
Q Consensus 211 ~v~~--~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~l~~~--~G~L~~~~~~~~~~~l~iW~l~~ 286 (376)
+++- +|.|||.... ...|..+|+.+++...+.+|.. ..++.. +|+|+++... .+.+..++.
T Consensus 5 p~~d~~~g~l~~~D~~-----~~~i~~~~~~~~~~~~~~~~~~------~G~~~~~~~g~l~v~~~~----~~~~~d~~~ 69 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIP-----GGRIYRVDPDTGEVEVIDLPGP------NGMAFDRPDGRLYVADSG----GIAVVDPDT 69 (246)
T ss_dssp EEEETTTTEEEEEETT-----TTEEEEEETTTTEEEEEESSSE------EEEEEECTTSEEEEEETT----CEEEEETTT
T ss_pred eEEECCCCEEEEEEcC-----CCEEEEEECCCCeEEEEecCCC------ceEEEEccCCEEEEEEcC----ceEEEecCC
Confidence 4444 6999999765 5699999999999988877772 223333 6777666542 233333344
Q ss_pred CceeeEEEEccC-C-ceeEe--EEEeeCCcEEEEecC---------CEEEEEECCCCCEEEEE
Q 036621 287 KNWIKQLTVGPF-I-GIFQP--LLFWKKGAFFVESNS---------SQLLLYEPGTGELRDFE 336 (376)
Q Consensus 287 ~~W~~~~~i~~~-~-~~~~~--~~~~~~~~l~~~~~~---------~~~~~yd~~~~~~~~v~ 336 (376)
.+++.+... +. . ....+ +++..+|.+++-... ++++.++++ ++.+.+.
T Consensus 70 g~~~~~~~~-~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 70 GKVTVLADL-PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp TEEEEEEEE-ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred CcEEEEeec-cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 788888777 32 1 22333 555677888776431 458999999 6555553
No 118
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=39.57 E-value=1.3e+02 Score=29.28 Aligned_cols=53 Identities=11% Similarity=0.222 Sum_probs=39.0
Q ss_pred CCEEEEEEecC----CceeeEEEEccCCceeEeEEEeeCCcE-EE-EecCCEEEEEECCCCCEE
Q 036621 276 DHCFKIWVMRK----KNWIKQLTVGPFIGIFQPLLFWKKGAF-FV-ESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 276 ~~~l~iW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~yd~~~~~~~ 333 (376)
.+.+.+|-... ..|.+.+.- |-.. +|+....+. ++ +..+++++.||...++..
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsA-P~~g----icfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSA-PCRG----ICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccC-CcCc----ceecCCccceEEEecccceEEEeeccccccc
Confidence 68899999887 789999887 6433 666665553 33 345889999999977543
No 119
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=39.16 E-value=82 Score=23.95 Aligned_cols=42 Identities=7% Similarity=0.128 Sum_probs=29.0
Q ss_pred CeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEE
Q 036621 119 NRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLI 168 (376)
Q Consensus 119 ~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~ 168 (376)
..+.++||.|+.|... ........ .+.+.+++..+.|+|+..
T Consensus 9 A~Vm~~d~~tk~W~P~--~~~~~~ls------~V~~~~~~~~~~yrIvg~ 50 (111)
T cd01207 9 ASVMVYDDSNKKWVPA--GGGSQGFS------RVQIYHHPRNNTFRVVGR 50 (111)
T ss_pred EEeeEEcCCCCcEEcC--CCCCCCcc------eEEEEEcCCCCEEEEEEe
Confidence 3578899999997644 22111111 467888888899999987
No 120
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=38.80 E-value=2.3e+02 Score=29.45 Aligned_cols=92 Identities=21% Similarity=0.295 Sum_probs=58.5
Q ss_pred EEEEEEcCccceee---ecCCCCCCCCCceEEEEEC--Ce-EEEEEEecCCCEEEEEEecC--------CceeeEEEEcc
Q 036621 232 VILSFNMADEKFQE---IQGPCILESSLDVTLGIYY--QS-LSLLILDNVDHCFKIWVMRK--------KNWIKQLTVGP 297 (376)
Q Consensus 232 ~il~fD~~~~~~~~---i~~P~~~~~~~~~~l~~~~--G~-L~~~~~~~~~~~l~iW~l~~--------~~W~~~~~i~~ 297 (376)
..-.||.....|.. |..|.+... .....++ -+ -|+.... +..+.||.+.+ ..|+.+..= .
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~~---vat~~~~~~rs~~~vta~~--dg~~KiW~~~~~~n~~k~~s~W~c~~i~-s 506 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNAF---VATIFLNPTRSVRCVTASV--DGDFKIWVFTDDSNIYKKSSNWTCKAIG-S 506 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCcee---EEEEEecCcccceeEEecc--CCeEEEEEEecccccCcCccceEEeeee-c
Confidence 44566777777744 467776542 2222221 12 2333324 78899999955 789987633 4
Q ss_pred CCce-eEeEEEeeCCcEEEEecCCEEEEEECCC
Q 036621 298 FIGI-FQPLLFWKKGAFFVESNSSQLLLYEPGT 329 (376)
Q Consensus 298 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~yd~~~ 329 (376)
+... ....++..+|.++....+..+-.||..+
T Consensus 507 y~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 507 YHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred cccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 4322 3446667888888888888899999998
No 121
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.32 E-value=2.3e+02 Score=29.95 Aligned_cols=70 Identities=16% Similarity=0.389 Sum_probs=41.0
Q ss_pred EEECCeEEEEEEecCCCEEEEEEecC-CceeeEEEEccCCceeEeEEEeeCCcEEEEec-CCEEEEEECCCCC
Q 036621 261 GIYYQSLSLLILDNVDHCFKIWVMRK-KNWIKQLTVGPFIGIFQPLLFWKKGAFFVESN-SSQLLLYEPGTGE 331 (376)
Q Consensus 261 ~~~~G~L~~~~~~~~~~~l~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~yd~~~~~ 331 (376)
+...+.|=++.+...+..+.+|+|.+ +.|+.-..=+-...+.+ +-++.+.++++... ++.+-+||+..++
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVss-vlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSS-VLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcce-EEecCccceeEecCCCccEEEEeccccc
Confidence 34455544444433388999999999 99988644322223222 33344445555443 5667777777654
No 122
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=36.39 E-value=3.7e+02 Score=25.28 Aligned_cols=103 Identities=12% Similarity=0.072 Sum_probs=57.1
Q ss_pred eEEEEecccCCCCceEEEEEEcCccc-eeeecCCCCCCCCCceEEEEE-CCeEEEEEEecCCCEEEEEEecCCceeeEEE
Q 036621 217 AFYWLLKLENDNDSYVILSFNMADEK-FQEIQGPCILESSLDVTLGIY-YQSLSLLILDNVDHCFKIWVMRKKNWIKQLT 294 (376)
Q Consensus 217 ~lYwl~~~~~~~~~~~il~fD~~~~~-~~~i~~P~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~l~iW~l~~~~W~~~~~ 294 (376)
.++....+ ..+.+..+|..+.+ -..|+..... ...+... +|+..++... +..+.++-+...+ .+.+
T Consensus 6 ~l~~V~~~----~~~~v~viD~~t~~~~~~i~~~~~~----h~~~~~s~Dgr~~yv~~r--dg~vsviD~~~~~--~v~~ 73 (369)
T PF02239_consen 6 NLFYVVER----GSGSVAVIDGATNKVVARIPTGGAP----HAGLKFSPDGRYLYVANR--DGTVSVIDLATGK--VVAT 73 (369)
T ss_dssp GEEEEEEG----GGTEEEEEETTT-SEEEEEE-STTE----EEEEE-TT-SSEEEEEET--TSEEEEEETTSSS--EEEE
T ss_pred cEEEEEec----CCCEEEEEECCCCeEEEEEcCCCCc----eeEEEecCCCCEEEEEcC--CCeEEEEECCccc--EEEE
Confidence 34444444 36689999988754 3445543221 1222222 5774444444 5677777766533 7777
Q ss_pred EccCCceeEeEEEeeCCcEEEEec--CCEEEEEECCCCCE
Q 036621 295 VGPFIGIFQPLLFWKKGAFFVESN--SSQLLLYEPGTGEL 332 (376)
Q Consensus 295 i~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~yd~~~~~~ 332 (376)
| .......-++++.+|+.++..+ ...+.++|.+|.+.
T Consensus 74 i-~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~ 112 (369)
T PF02239_consen 74 I-KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP 112 (369)
T ss_dssp E-E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E
T ss_pred E-ecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccc
Confidence 7 5555455577778888666543 67899999998653
No 123
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=35.46 E-value=3.1e+02 Score=25.65 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=42.6
Q ss_pred eEEEEEEecCCCEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCcEEEE-ecCCEEEEEECCCCCEEEE
Q 036621 266 SLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 266 ~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~yd~~~~~~~~v 335 (376)
..+..... +..|.+|.+.-. ..+.++.-.....+-+++..+|+.++. .+++.+-+||+++++-.+.
T Consensus 305 ~~l~s~Sr--DktIk~wdv~tg--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 305 QVLGSGSR--DKTIKIWDVSTG--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred cEEEeecc--cceEEEEeccCC--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 35554445 788999987653 123333233444666777888886655 4567799999998765443
No 124
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=33.93 E-value=5.8e+02 Score=26.83 Aligned_cols=31 Identities=13% Similarity=0.226 Sum_probs=23.7
Q ss_pred cceeEeCceEEEEecccCCCCceEEEEEEcCc--cceee
Q 036621 209 SERTYFDGAFYWLLKLENDNDSYVILSFNMAD--EKFQE 245 (376)
Q Consensus 209 ~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~--~~~~~ 245 (376)
..++.++|.+|.... ...+.++|..+ +.|+.
T Consensus 188 ~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKF 220 (764)
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCCcEEEEE
Confidence 558999999999764 34899999875 56654
No 125
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=33.83 E-value=4.9e+02 Score=25.91 Aligned_cols=110 Identities=17% Similarity=0.242 Sum_probs=55.8
Q ss_pred cceeEeCceEEEEecccCCCCceEEEEEEcCc--cceeee-cCCCCCCCC-----CceEEEEECCeEEEEEEecCCCEEE
Q 036621 209 SERTYFDGAFYWLLKLENDNDSYVILSFNMAD--EKFQEI-QGPCILESS-----LDVTLGIYYQSLSLLILDNVDHCFK 280 (376)
Q Consensus 209 ~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~--~~~~~i-~~P~~~~~~-----~~~~l~~~~G~L~~~~~~~~~~~l~ 280 (376)
..+++.+|.+|..... ..|.++|..+ +.|+.- ..|...... ....++..+|++++.... . .
T Consensus 63 stPvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d---g--~ 131 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD---A--R 131 (527)
T ss_pred cCCEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC---C--E
Confidence 4478899999986643 4799999876 456543 333221110 011234445666554432 1 2
Q ss_pred EEEecC----CceeeEEEEccCC----ceeEeEEEeeCCcEEEEec------CCEEEEEECCCCCEE
Q 036621 281 IWVMRK----KNWIKQLTVGPFI----GIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELR 333 (376)
Q Consensus 281 iW~l~~----~~W~~~~~i~~~~----~~~~~~~~~~~~~l~~~~~------~~~~~~yd~~~~~~~ 333 (376)
+..++- ..|..... ... ....|+. .++.|++... ++.++.||.+|++..
T Consensus 132 l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNG--DYKAGYTITAAPLV--VKGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred EEEEECCCCCEEeecccc--cccccccccCCcEE--ECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 223322 44544321 111 0122322 2345555432 467999999998644
No 126
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.81 E-value=3.7e+02 Score=24.56 Aligned_cols=198 Identities=13% Similarity=0.064 Sum_probs=0.0
Q ss_pred EEeeeCCCCCeEEEEEEEEecCCCCCCcccceEEEEEcCCCceEeccCCCc--cccCCcceeEeCceEEEEecccCCCCc
Q 036621 153 GFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNLKPIDY--TMRLSSERTYFDGAFYWLLKLENDNDS 230 (376)
Q Consensus 153 ~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~p~--~~~~~~~~v~~~G~lYwl~~~~~~~~~ 230 (376)
++..+|.....-++. -+.. ..+.+|+..++.=...-..+. .+.. +....-+|..-+.+..+.....
T Consensus 9 ~~a~~p~~~~avafa----RRPG-------~~~~v~D~~~g~~~~~~~a~~gRHFyG-Hg~fs~dG~~LytTEnd~~~g~ 76 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFA----RRPG-------TFALVFDCRTGQLLQRLWAPPGRHFYG-HGVFSPDGRLLYTTENDYETGR 76 (305)
T ss_pred ceeeCCCCCeEEEEE----eCCC-------cEEEEEEcCCCceeeEEcCCCCCEEec-CEEEcCCCCEEEEeccccCCCc
Q ss_pred eEEEEEEcCccceeee-cCCCCCCCCCceEEEEECCeEEEEEE------ecCCCEEEEEEecC-------------Ccee
Q 036621 231 YVILSFNMADEKFQEI-QGPCILESSLDVTLGIYYQSLSLLIL------DNVDHCFKIWVMRK-------------KNWI 290 (376)
Q Consensus 231 ~~il~fD~~~~~~~~i-~~P~~~~~~~~~~l~~~~G~L~~~~~------~~~~~~l~iW~l~~-------------~~W~ 290 (376)
..|-+||.. +.+..+ ++|..--......+.--+..|.+... .....++.+=.|+- +.|.
T Consensus 77 G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 77 GVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred EEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Q ss_pred eEEEEccCCceeEeEEEeeCCcEEEEecCCE-------EEEEECCCCCEEEEEEe-eceeEEEEeeccccccCCCCceee
Q 036621 291 KQLTVGPFIGIFQPLLFWKKGAFFVESNSSQ-------LLLYEPGTGELRDFELE-CCWFSVYIYTESLIPLKGGDGVFD 362 (376)
Q Consensus 291 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~yd~~~~~~~~v~~~-~~~~~~~~y~~sl~s~~~~~~~~~ 362 (376)
+-... .....+-+++..+|.+++-.-... ++...-+.+.++.+... ..+.....|.-|+ ......+.+.
T Consensus 156 Lp~~~--~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSI-a~~~~g~~ia 232 (305)
T PF07433_consen 156 LPPDL--HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSI-AADRDGRLIA 232 (305)
T ss_pred cCccc--cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEE-EEeCCCCEEE
Q ss_pred eece
Q 036621 363 FDIP 366 (376)
Q Consensus 363 ~~~~ 366 (376)
+++|
T Consensus 233 ~tsP 236 (305)
T PF07433_consen 233 VTSP 236 (305)
T ss_pred EECC
No 127
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=32.38 E-value=4.6e+02 Score=25.19 Aligned_cols=120 Identities=14% Similarity=0.260 Sum_probs=67.0
Q ss_pred ceEEEEEcCCCceEeccCCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCc-cceeeecCCCCCCCCCceEEE
Q 036621 183 SLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMAD-EKFQEIQGPCILESSLDVTLG 261 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~-~~~~~i~~P~~~~~~~~~~l~ 261 (376)
..+.||++.+.. .+..+|..-. +-..+-+.-.=||+.... +...+..||+.. +.|..++++.... ..-.
T Consensus 369 ~~vkiwdlks~~--~~a~Fpght~-~vk~i~FsENGY~Lat~a---dd~~V~lwDLRKl~n~kt~~l~~~~~----v~s~ 438 (506)
T KOG0289|consen 369 GVVKIWDLKSQT--NVAKFPGHTG-PVKAISFSENGYWLATAA---DDGSVKLWDLRKLKNFKTIQLDEKKE----VNSL 438 (506)
T ss_pred ceEEEEEcCCcc--ccccCCCCCC-ceeEEEeccCceEEEEEe---cCCeEEEEEehhhcccceeecccccc----ceeE
Confidence 466677766654 3344444111 123455555559998653 244699999976 5667777776532 1112
Q ss_pred EE--CCeEEEEEEecCCCEEEEEEecC--CceeeEEEEccCCc-eeEeEEEeeCCcEEEEe
Q 036621 262 IY--YQSLSLLILDNVDHCFKIWVMRK--KNWIKQLTVGPFIG-IFQPLLFWKKGAFFVES 317 (376)
Q Consensus 262 ~~--~G~L~~~~~~~~~~~l~iW~l~~--~~W~~~~~i~~~~~-~~~~~~~~~~~~l~~~~ 317 (376)
.+ .|....+. ...++|+..+. .+|+++... .... ....+.+.++..++...
T Consensus 439 ~fD~SGt~L~~~----g~~l~Vy~~~k~~k~W~~~~~~-~~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 439 SFDQSGTYLGIA----GSDLQVYICKKKTKSWTEIKEL-ADHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred EEcCCCCeEEee----cceeEEEEEecccccceeeehh-hhcccccceeeecccceEEeec
Confidence 22 34443333 35678888776 999998877 3322 33334444444444443
No 128
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=31.92 E-value=3.3e+02 Score=27.09 Aligned_cols=109 Identities=14% Similarity=0.210 Sum_probs=59.8
Q ss_pred eeceEEEec-CCCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccceEE
Q 036621 108 YCGIVFIEG-LNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVA 186 (376)
Q Consensus 108 ~~Gll~~~~-~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
.+|-+++.+ +..++.||||..++ .|-........+ .+...|-|.+++-.|+... .+ ..+.
T Consensus 60 ~dG~lL~SGSDD~r~ivWd~~~~K--llhsI~TgHtaN------IFsvKFvP~tnnriv~sgA----gD-------k~i~ 120 (758)
T KOG1310|consen 60 ADGELLASGSDDTRLIVWDPFEYK--LLHSISTGHTAN------IFSVKFVPYTNNRIVLSGA----GD-------KLIK 120 (758)
T ss_pred CCCCEEeecCCcceEEeecchhcc--eeeeeecccccc------eeEEeeeccCCCeEEEecc----Cc-------ceEE
Confidence 478887776 57899999999444 333333333334 3455566777665555431 11 5777
Q ss_pred EEEcCCCceEecc-CCCc---cc-----cCCcceeEeCc-eEEEEecccCCCCceEEEEEEcCc
Q 036621 187 VYTLRTNSWKNLK-PIDY---TM-----RLSSERTYFDG-AFYWLLKLENDNDSYVILSFNMAD 240 (376)
Q Consensus 187 vyss~t~~W~~~~-~~p~---~~-----~~~~~~v~~~G-~lYwl~~~~~~~~~~~il~fD~~~ 240 (376)
+|+....+=+-.+ .+-. .| +-+.-++.=+| ..+|-+.. .+.|..||+..
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE-----DGtirQyDiRE 179 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE-----DGTIRQYDIRE 179 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC-----CcceeeecccC
Confidence 7777642222111 1110 11 11112333345 67888765 45788888865
No 129
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=31.34 E-value=1.5e+02 Score=25.97 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=38.3
Q ss_pred eeceEEEecCCCeEEEEecCcccceec--CCCccCCCCccccccceEEEeeeCCCCCeEEEEE
Q 036621 108 YCGIVFIEGLNNRITLWNIATRESITL--PKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLI 168 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~v~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~ 168 (376)
.+|.|.--....++|-.||.|+.-..+ .+........ .++|-|+|.-++-+||.-
T Consensus 37 a~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~------~~gvDFNP~aDRlRvvs~ 93 (236)
T PF14339_consen 37 ANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGT------AFGVDFNPAADRLRVVSN 93 (236)
T ss_pred CCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCc------eEEEecCcccCcEEEEcc
Confidence 467776666678999999999997766 3222222121 468888898888888853
No 130
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=31.19 E-value=4.1e+02 Score=24.21 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=37.8
Q ss_pred CCeEEEEEEecCCCEEEEEEec-C--CceeeEEEEccCCceeEeEE--EeeCCcEEEEe-cCCEEEEEECCCCCE
Q 036621 264 YQSLSLLILDNVDHCFKIWVMR-K--KNWIKQLTVGPFIGIFQPLL--FWKKGAFFVES-NSSQLLLYEPGTGEL 332 (376)
Q Consensus 264 ~G~L~~~~~~~~~~~l~iW~l~-~--~~W~~~~~i~~~~~~~~~~~--~~~~~~l~~~~-~~~~~~~yd~~~~~~ 332 (376)
+|.+.+..+. +..+-+|... + .-|.++-.- ..+.. ...++..++.+ .|+.+..+|.+|++-
T Consensus 58 ~gs~~aSgG~--Dr~I~LWnv~gdceN~~~lkgHs------gAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 58 DGSCFASGGS--DRAIVLWNVYGDCENFWVLKGHS------GAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR 124 (338)
T ss_pred CCCeEeecCC--cceEEEEeccccccceeeecccc------ceeEeeeeccCCCEEEEecCCceEEEEeccccee
Confidence 5655555555 8899999944 4 778776211 11122 23455555554 478899999999853
No 131
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=30.72 E-value=4.1e+02 Score=24.10 Aligned_cols=96 Identities=11% Similarity=0.098 Sum_probs=58.2
Q ss_pred eEEEEEEcCcc-----ceeee---cCCCCCCCCCceEEEEECCeEEEEEEecCCCEEEEEEecCCc-eeeEEEEccCCce
Q 036621 231 YVILSFNMADE-----KFQEI---QGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKN-WIKQLTVGPFIGI 301 (376)
Q Consensus 231 ~~il~fD~~~~-----~~~~i---~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~~~-W~~~~~i~~~~~~ 301 (376)
+.|+.|+..+. ++..+ +.+.. -..+...+|+|.+.. ...+.++.++... +..+... ....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~-----V~ai~~~~~~lv~~~----g~~l~v~~l~~~~~l~~~~~~-~~~~- 130 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGP-----VTAICSFNGRLVVAV----GNKLYVYDLDNSKTLLKKAFY-DSPF- 130 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS------EEEEEEETTEEEEEE----TTEEEEEEEETTSSEEEEEEE--BSS-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCc-----ceEhhhhCCEEEEee----cCEEEEEEccCcccchhhhee-cceE-
Confidence 67888888774 44443 22211 356777888833333 4789999999966 8888877 3333
Q ss_pred eEeEEEeeCCcEEEEec-CC--EEEEEECCCCCEEEEEEe
Q 036621 302 FQPLLFWKKGAFFVESN-SS--QLLLYEPGTGELRDFELE 338 (376)
Q Consensus 302 ~~~~~~~~~~~l~~~~~-~~--~~~~yd~~~~~~~~v~~~ 338 (376)
.+..+...++.++..+ .+ .++.|+.+.+++..+.-.
T Consensus 131 -~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d 169 (321)
T PF03178_consen 131 -YITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARD 169 (321)
T ss_dssp -SEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEE
T ss_pred -EEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEec
Confidence 3344444355444443 23 366778877888888765
No 132
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.46 E-value=6.3e+02 Score=26.05 Aligned_cols=102 Identities=10% Similarity=0.205 Sum_probs=0.0
Q ss_pred Cc-eEEEEecccCCCCceEEEEEEcCccceeeecCCCCCCCCC---ceEEEEECCeEEEEEEecCCCEEEEEEecC----
Q 036621 215 DG-AFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSL---DVTLGIYYQSLSLLILDNVDHCFKIWVMRK---- 286 (376)
Q Consensus 215 ~G-~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~---~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~---- 286 (376)
|| .+|-.+.+ .|...|+.+.+-. +|....... .....+.++...+.... ..-+++|.+..
T Consensus 30 nG~~L~t~~~d-------~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a~r--s~llrv~~L~tgk~i 97 (775)
T KOG0319|consen 30 NGQHLYTACGD-------RVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTASR--SQLLRVWSLPTGKLI 97 (775)
T ss_pred CCCEEEEecCc-------eEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEeec--cceEEEEEcccchHh
Q ss_pred CceeeEEEEccCCceeEeEEEeeCCcEEEEec-CCEEEEEECCCCCEE
Q 036621 287 KNWIKQLTVGPFIGIFQPLLFWKKGAFFVESN-SSQLLLYEPGTGELR 333 (376)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~yd~~~~~~~ 333 (376)
.+|.-.+.= | ...+.+...+.++-..+ ++.+-++|.+.+...
T Consensus 98 rswKa~He~-P----vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 98 RSWKAIHEA-P----VITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred HhHhhccCC-C----eEEEEEcCCCceEEeccccceEEEEEeeCCEEE
No 133
>PTZ00421 coronin; Provisional
Probab=28.50 E-value=5.8e+02 Score=25.14 Aligned_cols=143 Identities=12% Similarity=0.044 Sum_probs=64.7
Q ss_pred ceEEEEEcCCCce-EeccCCCccccCCcceeEeCceEEEEecccCCCCceEEEEEEcCccceeeecCCCCCCCCCceEEE
Q 036621 183 SLVAVYTLRTNSW-KNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLG 261 (376)
Q Consensus 183 ~~~~vyss~t~~W-~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~l~ 261 (376)
..+.+++.+++.- ..+........ .-...-+|.+...+.. ...|-.||+.+.+... .+..+........+.
T Consensus 148 gtVrIWDl~tg~~~~~l~~h~~~V~--sla~spdG~lLatgs~-----Dg~IrIwD~rsg~~v~-tl~~H~~~~~~~~~w 219 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCHSDQIT--SLEWNLDGSLLCTTSK-----DKKLNIIDPRDGTIVS-SVEAHASAKSQRCLW 219 (493)
T ss_pred CEEEEEECCCCeEEEEEcCCCCceE--EEEEECCCCEEEEecC-----CCEEEEEECCCCcEEE-EEecCCCCcceEEEE
Confidence 4788888876532 11111111000 0011225655444433 4578899998765321 222211110011111
Q ss_pred EECCeEEEEEE-e-cCCCEEEEEEecCCceeeEEEEc-cCCceeEeEEEeeCCcEEEEe--cCCEEEEEECCCCCEEE
Q 036621 262 IYYQSLSLLIL-D-NVDHCFKIWVMRKKNWIKQLTVG-PFIGIFQPLLFWKKGAFFVES--NSSQLLLYEPGTGELRD 334 (376)
Q Consensus 262 ~~~G~L~~~~~-~-~~~~~l~iW~l~~~~W~~~~~i~-~~~~~~~~~~~~~~~~l~~~~--~~~~~~~yd~~~~~~~~ 334 (376)
..++.+.+... . ..+..+.+|-+....- ....++ ..........+..++.+++.. +++.+.+||+.+++...
T Consensus 220 ~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 220 AKRKDLIITLGCSKSQQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred cCCCCeEEEEecCCCCCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 22333333332 2 3467899999876211 111220 111111222334556655543 36778899988876543
No 134
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=28.26 E-value=3.6e+02 Score=22.70 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.3
Q ss_pred CCEEEEEECCCCCEEEEEE
Q 036621 319 SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 319 ~~~~~~yd~~~~~~~~v~~ 337 (376)
++.||.||+.|++.+.+.-
T Consensus 139 GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 139 GGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred CCeEEEEEccCCceeEeee
Confidence 5679999999999988865
No 135
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=28.03 E-value=6.1e+02 Score=25.19 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=51.0
Q ss_pred ceEEEEEEcCccceeeecCCCCCCCCCceEEEEECCeEEEEEEecCCCEEEEEEecC----CceeeEEEEccCCceeEeE
Q 036621 230 SYVILSFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRK----KNWIKQLTVGPFIGIFQPL 305 (376)
Q Consensus 230 ~~~il~fD~~~~~~~~i~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~----~~W~~~~~i~~~~~~~~~~ 305 (376)
.+.|+.|+....+.+..-.-..... .........++.++...+.+..+..|..++ -.|.... ..+.-+
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~--~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~------~~~~sl 150 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYG--NVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK------PLVSSL 150 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCC--cceeeecccccCceEecCCceeEEEEecccceeeeeeccCC------CccceE
Confidence 5678888877765544311010000 112222345565555544567788888877 2222211 113446
Q ss_pred EEeeCCcEEEEecCCEEEEEECCCCCE
Q 036621 306 LFWKKGAFFVESNSSQLLLYEPGTGEL 332 (376)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~yd~~~~~~ 332 (376)
++..++++++.. .+.+-.||.++++.
T Consensus 151 ~is~D~~~l~~a-s~~ik~~~~~~kev 176 (541)
T KOG4547|consen 151 CISPDGKILLTA-SRQIKVLDIETKEV 176 (541)
T ss_pred EEcCCCCEEEec-cceEEEEEccCceE
Confidence 667777776654 46688888888653
No 136
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.51 E-value=2.2e+02 Score=27.08 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=19.2
Q ss_pred CCeEEEEEEecCCCEEEEEEecC---CceeeEE
Q 036621 264 YQSLSLLILDNVDHCFKIWVMRK---KNWIKQL 293 (376)
Q Consensus 264 ~G~L~~~~~~~~~~~l~iW~l~~---~~W~~~~ 293 (376)
||.=.++++. +..+..|-+++ +.|.-+.
T Consensus 323 Dg~~~V~Gs~--dr~i~~wdlDgn~~~~W~gvr 353 (519)
T KOG0293|consen 323 DGFRFVTGSP--DRTIIMWDLDGNILGNWEGVR 353 (519)
T ss_pred CCceeEecCC--CCcEEEecCCcchhhcccccc
Confidence 5544444444 68889999988 7887765
No 137
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=26.10 E-value=6e+02 Score=24.48 Aligned_cols=115 Identities=14% Similarity=0.142 Sum_probs=72.0
Q ss_pred eeEeCceEEEEecccCCCCceEEEEEEcCccceeeecCCCCCCCCCceEEEEECCeEEEEEEecCCCEEEEEEecCCcee
Q 036621 211 RTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWI 290 (376)
Q Consensus 211 ~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~~~W~ 290 (376)
.+.=||.++-.+.. ...+-.||+.+.. ..-.+|.+... -..+.-.+..-+++...+ +..+.+|-|....
T Consensus 354 ~fHpDgLifgtgt~-----d~~vkiwdlks~~-~~a~Fpght~~--vk~i~FsENGY~Lat~ad-d~~V~lwDLRKl~-- 422 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTP-----DGVVKIWDLKSQT-NVAKFPGHTGP--VKAISFSENGYWLATAAD-DGSVKLWDLRKLK-- 422 (506)
T ss_pred eEcCCceEEeccCC-----CceEEEEEcCCcc-ccccCCCCCCc--eeEEEeccCceEEEEEec-CCeEEEEEehhhc--
Confidence 44457777766654 4578899999887 66688886553 233444444445555531 5569999997722
Q ss_pred eEEEEccCCce--eEeEEEeeCCcEEEEec-CCEEEEEECCCCCEEEEEE
Q 036621 291 KQLTVGPFIGI--FQPLLFWKKGAFFVESN-SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 291 ~~~~i~~~~~~--~~~~~~~~~~~l~~~~~-~~~~~~yd~~~~~~~~v~~ 337 (376)
...++ .++.- ..-+.+...|..+...+ +-+++.|+-++++|.++..
T Consensus 423 n~kt~-~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 423 NFKTI-QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred cccee-eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 22333 33322 33455566677655544 3468888999999999865
No 138
>PLN02772 guanylate kinase
Probab=24.76 E-value=5.7e+02 Score=24.39 Aligned_cols=60 Identities=13% Similarity=0.126 Sum_probs=39.3
Q ss_pred eEEEEECCeEEEEEE-ecCC-CEEEEEEecC--CceeeEEEEc--cCCceeEeEEEeeCCcEEEEe
Q 036621 258 VTLGIYYQSLSLLIL-DNVD-HCFKIWVMRK--KNWIKQLTVG--PFIGIFQPLLFWKKGAFFVES 317 (376)
Q Consensus 258 ~~l~~~~G~L~~~~~-~~~~-~~l~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~l~~~~ 317 (376)
...++.++++++++. ++.. ....+|.++. ..|+.-...| |......-.++..++.|++..
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~ 93 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIK 93 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEe
Confidence 456778999999998 3322 5678899988 8998876554 344434444545556665543
No 139
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=24.72 E-value=2.2e+02 Score=25.08 Aligned_cols=86 Identities=9% Similarity=0.036 Sum_probs=55.1
Q ss_pred EEEEEEcCccceeeecCCCCCCCCCceEEEEECCeEEEEEEe-cCCCEEEEEEecC----CceeeEE-EEccCCceeEeE
Q 036621 232 VILSFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILD-NVDHCFKIWVMRK----KNWIKQL-TVGPFIGIFQPL 305 (376)
Q Consensus 232 ~il~fD~~~~~~~~i~~P~~~~~~~~~~l~~~~G~L~~~~~~-~~~~~l~iW~l~~----~~W~~~~-~i~~~~~~~~~~ 305 (376)
.-..||+.+.+++.+..+.+.-.. .....-+|+|...... .+...+++..-.. ..|.... .| .....+.-.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCS--gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m-~~~RWYpT~ 123 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCS--GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM-QSGRWYPTA 123 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCccc--CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc-cCCCccccc
Confidence 457899999999998876554432 2222347888877773 3345566665433 5787764 46 555555556
Q ss_pred EEeeCCcEEEEecCC
Q 036621 306 LFWKKGAFFVESNSS 320 (376)
Q Consensus 306 ~~~~~~~l~~~~~~~ 320 (376)
....+|+++++.+..
T Consensus 124 ~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSN 138 (243)
T ss_pred eECCCCCEEEEeCcC
Confidence 666788888876643
No 140
>PTZ00421 coronin; Provisional
Probab=24.63 E-value=6.9e+02 Score=24.65 Aligned_cols=63 Identities=13% Similarity=0.239 Sum_probs=37.1
Q ss_pred eEEEEEEecCCCEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCcEEEE-ecCCEEEEEECCCCCE
Q 036621 266 SLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGEL 332 (376)
Q Consensus 266 ~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~yd~~~~~~ 332 (376)
.+.+.... +..+.||-++... .+..+........-+.+..++.+++. ..++.+.+||+++++.
T Consensus 139 ~iLaSgs~--DgtVrIWDl~tg~--~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 139 NVLASAGA--DMVVNVWDVERGK--AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred CEEEEEeC--CCEEEEEECCCCe--EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence 34444444 7889999987632 23334112222333455556776554 4477899999998753
No 141
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=24.43 E-value=3.9e+02 Score=23.75 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=18.8
Q ss_pred CCeEEEEEEecCCCEEEEEEecC
Q 036621 264 YQSLSLLILDNVDHCFKIWVMRK 286 (376)
Q Consensus 264 ~G~L~~~~~~~~~~~l~iW~l~~ 286 (376)
+|.+|..... +.++.||++.-
T Consensus 278 dGE~yAsGSE--DGTirlWQt~~ 298 (334)
T KOG0278|consen 278 DGELYASGSE--DGTIRLWQTTP 298 (334)
T ss_pred CCceeeccCC--CceEEEEEecC
Confidence 8999988887 88999999987
No 142
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=24.08 E-value=2e+02 Score=21.61 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=29.0
Q ss_pred CeEEEEecCccc-ceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEE
Q 036621 119 NRITLWNIATRE-SITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLIL 169 (376)
Q Consensus 119 ~~~~v~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 169 (376)
-+++..||-+++ |... .... .+.+..|...+.|.|..+.
T Consensus 16 A~v~~~~p~~~~~W~~~------~~~g------~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV------KGTG------VVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES------SSEE------EEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC------CeEE------EEEEEEECCCCEEEEEEEE
Confidence 468899999888 8876 1111 4678889888889888873
No 143
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=23.77 E-value=4.9e+02 Score=22.70 Aligned_cols=125 Identities=14% Similarity=0.200 Sum_probs=68.7
Q ss_pred eEEEEEcCC-CceEeccCCCc-cccCCcceeE--eCceEEEEecccCCCCceEEEEEEcC-ccceeee---cCCCCCCCC
Q 036621 184 LVAVYTLRT-NSWKNLKPIDY-TMRLSSERTY--FDGAFYWLLKLENDNDSYVILSFNMA-DEKFQEI---QGPCILESS 255 (376)
Q Consensus 184 ~~~vyss~t-~~W~~~~~~p~-~~~~~~~~v~--~~G~lYwl~~~~~~~~~~~il~fD~~-~~~~~~i---~~P~~~~~~ 255 (376)
...+|+... ..|+.....+. .... ...+. -+|.+|.+.... . .....++.-.+ .++|+.. .+|....
T Consensus 135 ~~~~~S~D~G~tW~~~~~~~~~~~~~-e~~~~~~~dG~l~~~~R~~-~-~~~~~~~~S~D~G~TWs~~~~~~~~~~~~-- 209 (275)
T PF13088_consen 135 AFVYYSDDGGKTWSSGSPIPDGQGEC-EPSIVELPDGRLLAVFRTE-G-NDDIYISRSTDGGRTWSPPQPTNLPNPNS-- 209 (275)
T ss_dssp EEEEEESSTTSSEEEEEECECSEEEE-EEEEEEETTSEEEEEEEEC-S-STEEEEEEESSTTSS-EEEEEEECSSCCE--
T ss_pred eEEEEeCCCCceeeccccccccCCcc-eeEEEECCCCcEEEEEEcc-C-CCcEEEEEECCCCCcCCCceecccCcccC--
Confidence 333445443 46988874422 1111 12332 478888887652 1 12334444333 4678764 4554432
Q ss_pred CceEEEEE-CCeEEEEEEe-cCCCEEEEEEecC--CceeeEEEEccCC---ceeEeEEEeeCCcEE
Q 036621 256 LDVTLGIY-YQSLSLLILD-NVDHCFKIWVMRK--KNWIKQLTVGPFI---GIFQPLLFWKKGAFF 314 (376)
Q Consensus 256 ~~~~l~~~-~G~L~~~~~~-~~~~~l~iW~l~~--~~W~~~~~i~~~~---~~~~~~~~~~~~~l~ 314 (376)
...+..+ +|++.++... .....+.|+.-.+ ..|.....|.+-. .-+.-+....+|+|.
T Consensus 210 -~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~ 274 (275)
T PF13088_consen 210 -SISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLY 274 (275)
T ss_dssp -EEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEE
T ss_pred -CceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCC
Confidence 3444554 6888888883 2467899988777 9999998884322 123334444555654
No 144
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.66 E-value=1.7e+02 Score=29.97 Aligned_cols=53 Identities=13% Similarity=0.270 Sum_probs=40.6
Q ss_pred CCCEEEEEEecC---CceeeEEEEccCCceeEeEEEeeCCcEEE-EecCCEEEEEECCCCCEE
Q 036621 275 VDHCFKIWVMRK---KNWIKQLTVGPFIGIFQPLLFWKKGAFFV-ESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 275 ~~~~l~iW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~yd~~~~~~~ 333 (376)
.+..++||-..+ ..|.-+..| ...+|+..+|+-.+ -..++....|+.+..+++
T Consensus 430 LD~KvRiWsI~d~~Vv~W~Dl~~l------ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVDWNDLRDL------ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred cccceEEeecCcCeeEeehhhhhh------heeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 378899999887 778776655 56677788888544 445788999999988876
No 145
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=23.53 E-value=5.8e+02 Score=23.40 Aligned_cols=113 Identities=11% Similarity=0.111 Sum_probs=63.7
Q ss_pred ceEEEEEcCC--CceEeccCCCc---------cccCCcceeEeC-ceEEEEecccCCC--CceEEEEEEcCccceeeecC
Q 036621 183 SLVAVYTLRT--NSWKNLKPIDY---------TMRLSSERTYFD-GAFYWLLKLENDN--DSYVILSFNMADEKFQEIQG 248 (376)
Q Consensus 183 ~~~~vyss~t--~~W~~~~~~p~---------~~~~~~~~v~~~-G~lYwl~~~~~~~--~~~~il~fD~~~~~~~~i~~ 248 (376)
..+.+..|.+ ..|.....+.. .......++.++ |.+.+........ ....++..|-..++|+....
T Consensus 112 ~~~~~~~S~D~G~tW~~p~~l~~~~~~~~~~~~~~~~g~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~ 191 (351)
T cd00260 112 AYLVLVYSDDDGITWSSPRDLTPSVKGDNWAALFTGPGSGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEG 191 (351)
T ss_pred eEEEEEEEEcCCceecCCccCCccccCcceeEEEecCcCeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCC
Confidence 3455555544 37875442222 122223456664 8887766542211 23455556666789987644
Q ss_pred CCCCCCCCceEEEEE-CCeEEEEEEecCCCEEEEEEecC--CceeeEEEE
Q 036621 249 PCILESSLDVTLGIY-YQSLSLLILDNVDHCFKIWVMRK--KNWIKQLTV 295 (376)
Q Consensus 249 P~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~l~iW~l~~--~~W~~~~~i 295 (376)
+..........++++ +|+|.++..........+..-.| ..|+.....
T Consensus 192 ~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~D~G~tWs~~~~~ 241 (351)
T cd00260 192 VNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYESRDMGTTWTEALGT 241 (351)
T ss_pred CCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEEcCCCcCcccCcCC
Confidence 432111124678888 89998877653135555666556 899987654
No 146
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.12 E-value=3.2e+02 Score=26.09 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=43.8
Q ss_pred CCeEEEEEEecCCCEEEEEEecCCceeeEEEE-ccC-CceeEeEEEeeCC-cEEEEe-cCCEEEEEECCCCCEEEEEEe
Q 036621 264 YQSLSLLILDNVDHCFKIWVMRKKNWIKQLTV-GPF-IGIFQPLLFWKKG-AFFVES-NSSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 264 ~G~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i-~~~-~~~~~~~~~~~~~-~l~~~~-~~~~~~~yd~~~~~~~~v~~~ 338 (376)
+|++.++... ..++.+|-+++ |.++... |-. .....-.|++..+ +++... .+.+++.++.++++.-.+-.+
T Consensus 406 d~k~~LvnL~--~qei~LWDl~e--~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 406 DGKLALVNLQ--DQEIHLWDLEE--NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred CCcEEEEEcc--cCeeEEeecch--hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 7889999887 78999999985 4443222 111 1112223444444 344433 267899999999887665444
No 147
>PF15408 PH_7: Pleckstrin homology domain
Probab=22.81 E-value=31 Score=24.56 Aligned_cols=23 Identities=26% Similarity=0.739 Sum_probs=18.7
Q ss_pred cccccccccchhhHhhcCChHHH
Q 036621 24 KSLIRLRCVCKSWYALIKDPNFI 46 (376)
Q Consensus 24 ~~l~r~r~VcK~W~~lis~p~F~ 46 (376)
+-++..+-|||+|-....+|+|.
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhh
Confidence 34566778999999999999884
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=22.42 E-value=6.7e+02 Score=25.74 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCCCCCceEEEEECCeEEEEEEecCCCEEEEEEecC-CceeeEEEEccCCce-eEeEEEeeCCcEEEEec---CCEEEEE
Q 036621 251 ILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRK-KNWIKQLTVGPFIGI-FQPLLFWKKGAFFVESN---SSQLLLY 325 (376)
Q Consensus 251 ~~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~-~~W~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~---~~~~~~y 325 (376)
+...++...+..-++...+..+. .+.+.+|.-++ ..|++...| .-... ..-+.=...|++++... ..++|+=
T Consensus 314 g~a~GF~g~lw~~n~~~ii~~g~--~Gg~hlWkt~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 314 GSAGGFWGGLWSPNSNVIIAHGR--TGGFHLWKTKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFAR 390 (764)
T ss_pred ccccceeeEEEcCCCCEEEEecc--cCcEEEEeccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeecc
Q ss_pred ECCCCCEEEEEEe---eceeEEEEeec-cccccCCCCce--eeeece
Q 036621 326 EPGTGELRDFELE---CCWFSVYIYTE-SLIPLKGGDGV--FDFDIP 366 (376)
Q Consensus 326 d~~~~~~~~v~~~---~~~~~~~~y~~-sl~s~~~~~~~--~~~~~~ 366 (376)
.-+..+|+++.-. ..-.....+++ .+--++..+|+ +.+..|
T Consensus 391 wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 391 WGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred cccccceeeecccccccccceeeehccCCceeeecccceeeeeecCc
No 149
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=22.41 E-value=4.6e+02 Score=24.87 Aligned_cols=103 Identities=13% Similarity=0.152 Sum_probs=46.2
Q ss_pred CceEEEEEEcCccceeee-cCCCCCCCCCceEEEEECCeEEEEEEecCCCEE--EEEEecC---CceeeEEEEccCCcee
Q 036621 229 DSYVILSFNMADEKFQEI-QGPCILESSLDVTLGIYYQSLSLLILDNVDHCF--KIWVMRK---KNWIKQLTVGPFIGIF 302 (376)
Q Consensus 229 ~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l--~iW~l~~---~~W~~~~~i~~~~~~~ 302 (376)
..+.|+..|+.+.+...+ .-..-.. .....-.+..|.+.+..+....+ +||.++. ..|...... +.+..-
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlg---H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~g 241 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLG---HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVG 241 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EE---EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEE
T ss_pred CCceEEEEECCCCceeEEEecCcccc---CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccc
Confidence 467899999999888777 3222211 11111125555555553323443 6899987 556555554 433222
Q ss_pred EeEEEeeCCcEEEEec-----CCEEEEEECCCCCEEEE
Q 036621 303 QPLLFWKKGAFFVESN-----SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 303 ~~~~~~~~~~l~~~~~-----~~~~~~yd~~~~~~~~v 335 (376)
...-..++..|++... +..+..||++|..-+.+
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 2222223333444322 22589999999876654
No 150
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=22.22 E-value=9.6e+02 Score=25.50 Aligned_cols=112 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred ceeEeCceEEEEecccCCCCceEEEEEEcCccceeeecCCCCCCCCCceEEEEECCeEEEEEEecCCCEEEEEEecCCce
Q 036621 210 ERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNW 289 (376)
Q Consensus 210 ~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~~~W 289 (376)
.++-+++. |++.+. ....|.+|.+.+.+...|-.+..... ....+.-+|+..+++.. +..+.+=.+++.+=
T Consensus 60 ~~ia~~s~-~f~~~s----~~~tv~~y~fps~~~~~iL~Rftlp~--r~~~v~g~g~~iaagsd--D~~vK~~~~~D~s~ 130 (933)
T KOG1274|consen 60 SSIACYSN-HFLTGS----EQNTVLRYKFPSGEEDTILARFTLPI--RDLAVSGSGKMIAAGSD--DTAVKLLNLDDSSQ 130 (933)
T ss_pred EEEeeccc-ceEEee----ccceEEEeeCCCCCccceeeeeeccc--eEEEEecCCcEEEeecC--ceeEEEEeccccch
Q ss_pred eeEEEEccCCceeEeEEEeeCCcEEEEec-CCEEEEEECCCCCE
Q 036621 290 IKQLTVGPFIGIFQPLLFWKKGAFFVESN-SSQLLLYEPGTGEL 332 (376)
Q Consensus 290 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~yd~~~~~~ 332 (376)
.++.+ ..+.-..-+.+..+++++-... ++.+.+||++++..
T Consensus 131 ~~~lr--gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 131 EKVLR--GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL 172 (933)
T ss_pred heeec--ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh
No 151
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=22.16 E-value=1.1e+03 Score=26.13 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=40.8
Q ss_pred eEEEEEEcCccceeee--cCCCCCCCCCceEEEEECCe-EEEEEEecCCCEEEEEEecCCceeeEEEEccCCc
Q 036621 231 YVILSFNMADEKFQEI--QGPCILESSLDVTLGIYYQS-LSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIG 300 (376)
Q Consensus 231 ~~il~fD~~~~~~~~i--~~P~~~~~~~~~~l~~~~G~-L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~ 300 (376)
..|.-|.-...+=..+ +.|.+... .....-..++. |.++........+++|..+...|-++..+ .++.
T Consensus 266 ~~IvffErNGL~hg~f~l~~p~de~~-ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l-~~~~ 336 (1265)
T KOG1920|consen 266 SDIVFFERNGLRHGEFVLPFPLDEKE-VEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQEL-QFSQ 336 (1265)
T ss_pred CcEEEEecCCccccccccCCcccccc-hheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEE-eccc
Confidence 3677777666555544 44444332 11111233454 45545444466799999999999999888 5443
No 152
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=22.14 E-value=6.2e+02 Score=23.26 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=76.3
Q ss_pred ceEEEEEEcCccceeeecCCCCCCCCCceEEEEE--CCeEEEEEEecCCCEEEEEEecCCceeeEEEEccC-C-ceeEeE
Q 036621 230 SYVILSFNMADEKFQEIQGPCILESSLDVTLGIY--YQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPF-I-GIFQPL 305 (376)
Q Consensus 230 ~~~il~fD~~~~~~~~i~~P~~~~~~~~~~l~~~--~G~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~-~-~~~~~~ 305 (376)
...+-.||..+-+...-.-|...... .+.-+.. .|+|++-... ++.+.||---...= +.+|+.- . .-.+-.
T Consensus 237 Hp~~rlYdv~T~QcfvsanPd~qht~-ai~~V~Ys~t~~lYvTaSk--DG~IklwDGVS~rC--v~t~~~AH~gsevcSa 311 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSANPDDQHTG-AITQVRYSSTGSLYVTASK--DGAIKLWDGVSNRC--VRTIGNAHGGSEVCSA 311 (430)
T ss_pred CCceeEEeccceeEeeecCccccccc-ceeEEEecCCccEEEEecc--CCcEEeeccccHHH--HHHHHhhcCCceeeeE
Confidence 34677899988776555445554322 2222332 6899998887 78899996432000 0111000 0 013334
Q ss_pred EEeeCCcEEEEec-CCEEEEEECCCCCEEEEEEe--------eceeEEEEeeccccccCCCCceeeeecee
Q 036621 306 LFWKKGAFFVESN-SSQLLLYEPGTGELRDFELE--------CCWFSVYIYTESLIPLKGGDGVFDFDIPW 367 (376)
Q Consensus 306 ~~~~~~~l~~~~~-~~~~~~yd~~~~~~~~v~~~--------~~~~~~~~y~~sl~s~~~~~~~~~~~~~~ 367 (376)
-+.++++.++..+ +.-+..+.+.|++.-+...+ ...-.++.+.|..|-++ ||+......|
T Consensus 312 ~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~p--DEas~slcsW 380 (430)
T KOG0640|consen 312 VFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFP--DEASNSLCSW 380 (430)
T ss_pred EEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcc--ccccCceeec
Confidence 4567787666554 56688889999887766654 12345788888888887 5543333333
No 153
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=21.53 E-value=1.3e+02 Score=20.10 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=17.2
Q ss_pred CCcEEEEecCC--EEEEEECCCCCEEEEE
Q 036621 310 KGAFFVESNSS--QLLLYEPGTGELRDFE 336 (376)
Q Consensus 310 ~~~l~~~~~~~--~~~~yd~~~~~~~~v~ 336 (376)
++.+-+...++ ++|.||++++.++-+.
T Consensus 29 ~N~Fav~~e~~~iKIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 29 HNHFAVVDEDGQIKIFKYDEDTNEITLKK 57 (63)
T ss_dssp TTEEEEE-ETTEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEecCCeEEEEEeCCCCCeEEEEE
Confidence 34444442333 6999999999877553
No 154
>PTZ00420 coronin; Provisional
Probab=21.29 E-value=8.6e+02 Score=24.56 Aligned_cols=116 Identities=8% Similarity=0.045 Sum_probs=58.2
Q ss_pred CceEEEEecccCCCCceEEEEEEcCccceeeecCCCCCCCCC--ceEEEE--ECCeEEEEEEec--CCCEEEEEEecC-C
Q 036621 215 DGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSL--DVTLGI--YYQSLSLLILDN--VDHCFKIWVMRK-K 287 (376)
Q Consensus 215 ~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~--~~~l~~--~~G~L~~~~~~~--~~~~l~iW~l~~-~ 287 (376)
+|.+...+.. ...|..||+.+.+-.. .++.+..... ...+.. .++...+..+.+ ...++.||-+.. .
T Consensus 178 dG~lLat~s~-----D~~IrIwD~Rsg~~i~-tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~ 251 (568)
T PTZ00420 178 KGNLLSGTCV-----GKHMHIIDPRKQEIAS-SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT 251 (568)
T ss_pred CCCEEEEEec-----CCEEEEEECCCCcEEE-EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC
Confidence 5665543332 3478999998765321 2222221100 111111 244444444421 235899999886 4
Q ss_pred ceeeEEEEccCCceeEeEEEeeCCcEEEEe-cCCEEEEEECCCCCEEEEE
Q 036621 288 NWIKQLTVGPFIGIFQPLLFWKKGAFFVES-NSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 288 ~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~yd~~~~~~~~v~ 336 (376)
.=.....++.......|.+-..++.+|+.. +++.+.+|+..++.+..+.
T Consensus 252 ~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 252 SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 322233331111112334433445666554 4778999999887766654
No 155
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=21.23 E-value=2e+02 Score=20.06 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=6.5
Q ss_pred EeeeCCCCCeEEEEE
Q 036621 154 FGLDPKTKDYKVVLI 168 (376)
Q Consensus 154 ~g~d~~~~~ykvv~~ 168 (376)
.-||+.++.|-=|.+
T Consensus 32 ~lfDPETGqYVeV~i 46 (75)
T PF15232_consen 32 TLFDPETGQYVEVLI 46 (75)
T ss_pred eeecCCCCcEEEEeC
Confidence 334444444444443
No 156
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=20.82 E-value=8.2e+02 Score=24.61 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=47.4
Q ss_pred ceEEEEEEcCcccee-eecCCCCCCCCCceEEEEECCeEEEEEEecCCCEEEEEEecCCceee----EEEEccCCce---
Q 036621 230 SYVILSFNMADEKFQ-EIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIK----QLTVGPFIGI--- 301 (376)
Q Consensus 230 ~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~~~W~~----~~~i~~~~~~--- 301 (376)
...+..||++.++|- ++..-. ..-..+.+.+++|-|++ +.. ...++.|-....+=.. ...|+..+..
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~--~~lN~v~in~~hgLla~-Gt~--~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~ 228 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDS--GELNVVSINEEHGLLAC-GTE--DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAA 228 (703)
T ss_pred CcceEEEEcccccccccccccc--ccceeeeecCccceEEe-ccc--CceEEEecchhhhhheeeecccccCCCcccccc
Confidence 457899999999882 222111 11012333444553332 222 6788999876621111 1122111111
Q ss_pred --eEeEEEeeCCc-EEEEecCCEEEEEECCCCC
Q 036621 302 --FQPLLFWKKGA-FFVESNSSQLLLYEPGTGE 331 (376)
Q Consensus 302 --~~~~~~~~~~~-l~~~~~~~~~~~yd~~~~~ 331 (376)
...+.+.++|- +-+-...+.+++||+++.+
T Consensus 229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred CcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 22233333332 2333346789999999865
No 157
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=20.71 E-value=7e+02 Score=23.35 Aligned_cols=114 Identities=10% Similarity=0.124 Sum_probs=69.8
Q ss_pred eCceEEEEecccCCCCceEEEEEEcCcc------ceeeecCC---CCCCCCCceE-EEEE--CCeEEEEEEec-----CC
Q 036621 214 FDGAFYWLLKLENDNDSYVILSFNMADE------KFQEIQGP---CILESSLDVT-LGIY--YQSLSLLILDN-----VD 276 (376)
Q Consensus 214 ~~G~lYwl~~~~~~~~~~~il~fD~~~~------~~~~i~~P---~~~~~~~~~~-l~~~--~G~L~~~~~~~-----~~ 276 (376)
.+|..+|.... ..|..+|+++. .|..+..- ...... ..+ ++.- +++|++..... ..
T Consensus 204 ~dg~~~~vs~e------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~-g~q~ia~~~dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 204 KSGRLVWPTYT------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG-GWQQVAYHRARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred CCCcEEEEecC------CeEEEEecCCCcceecceeeeccccccccccCCC-cceeEEEcCCCCEEEEEecCCccccccC
Confidence 37899998854 58888886543 23333111 111111 112 2332 35567644211 12
Q ss_pred CEEEEEEecCCceeeEEEEccCCceeEeEEEeeCCc-EEEEec--CCEEEEEECCCCC-EEEE
Q 036621 277 HCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGA-FFVESN--SSQLLLYEPGTGE-LRDF 335 (376)
Q Consensus 277 ~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-l~~~~~--~~~~~~yd~~~~~-~~~v 335 (376)
..=+||+++-..+..+.+| +...-...+.+..+++ .++..+ ++.+.++|..+++ .+.+
T Consensus 277 ~~~~V~ViD~~t~kvi~~i-~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 277 ASRFLFVVDAKTGKRLRKI-ELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCEEEEEECCCCeEEEEE-eCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 2238999988999999999 7766566677888888 666554 4569999999874 4555
No 158
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=20.68 E-value=4.6e+02 Score=27.46 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=55.1
Q ss_pred ceEEEEecccCCCCceEEEEEEcCccceee-e-cCCCCCCCCCceEEEEEC--CeEEEEEEecCCCEEEEEEecC----C
Q 036621 216 GAFYWLLKLENDNDSYVILSFNMADEKFQE-I-QGPCILESSLDVTLGIYY--QSLSLLILDNVDHCFKIWVMRK----K 287 (376)
Q Consensus 216 G~lYwl~~~~~~~~~~~il~fD~~~~~~~~-i-~~P~~~~~~~~~~l~~~~--G~L~~~~~~~~~~~l~iW~l~~----~ 287 (376)
|.+-+++.. .+.|-.||+.++.-.. + +-|.+-.. ..-..+| +++.+.+.. ++-+..|.++. .
T Consensus 460 GNF~~IG~S-----~G~Id~fNmQSGi~r~sf~~~~ah~~~---V~gla~D~~n~~~vsa~~--~Gilkfw~f~~k~l~~ 529 (910)
T KOG1539|consen 460 GNFVFIGYS-----KGTIDRFNMQSGIHRKSFGDSPAHKGE---VTGLAVDGTNRLLVSAGA--DGILKFWDFKKKVLKK 529 (910)
T ss_pred CceEEEecc-----CCeEEEEEcccCeeecccccCccccCc---eeEEEecCCCceEEEccC--cceEEEEecCCcceee
Confidence 445555443 5688899987764322 1 33433321 2223344 345555555 78899999988 3
Q ss_pred ceeeEEEEccCCceeEeEEEeeCCcEEEEecCCEEEEEECCCCC
Q 036621 288 NWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGE 331 (376)
Q Consensus 288 ~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~yd~~~~~ 331 (376)
.|.+-+.+ ..+++....+-+.+..++-.+.+||..|++
T Consensus 530 ~l~l~~~~------~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k 567 (910)
T KOG1539|consen 530 SLRLGSSI------TGIVYHRVSDLLAIALDDFSIRVVDVVTRK 567 (910)
T ss_pred eeccCCCc------ceeeeeehhhhhhhhcCceeEEEEEchhhh
Confidence 44443333 333443333334455566678888887654
No 159
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=20.64 E-value=1.2e+03 Score=25.81 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=62.8
Q ss_pred CceEEEEecccCCCCceEEEEEEcCccceeeecCCC-----------CCCCCCceEEEEE-CCe-EEEEEEecCCCEEEE
Q 036621 215 DGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPC-----------ILESSLDVTLGIY-YQS-LSLLILDNVDHCFKI 281 (376)
Q Consensus 215 ~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~-----------~~~~~~~~~l~~~-~G~-L~~~~~~~~~~~l~i 281 (376)
+|.+|+.... .+.|..+|..+.....+.... .........++.. +|+ |+++... ...+.+
T Consensus 694 ~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--n~~Irv 766 (1057)
T PLN02919 694 NEKVYIAMAG-----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--SSSIRA 766 (1057)
T ss_pred CCeEEEEECC-----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--CCeEEE
Confidence 5788876543 557888998776654431100 0000012234443 444 7777665 678888
Q ss_pred EEecCCceeeEE-----------EEccCC------ceeEe--EEEeeCCcEEEEec-CCEEEEEECCCCCEEEE
Q 036621 282 WVMRKKNWIKQL-----------TVGPFI------GIFQP--LLFWKKGAFFVESN-SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 282 W~l~~~~W~~~~-----------~i~~~~------~~~~~--~~~~~~~~l~~~~~-~~~~~~yd~~~~~~~~v 335 (376)
|-++...-..+. .++..+ .+..| +++..+|++|+... +.++..||++++....+
T Consensus 767 ~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 767 LDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred EECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 887762222111 110000 01233 34456777877654 57899999998877654
No 160
>PF07861 WND: WisP family N-Terminal Region; InterPro: IPR012503 This family is found at the N terminus of the Tropheryma whipplei WisP family proteins [].
Probab=20.54 E-value=1.2e+02 Score=25.28 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=25.9
Q ss_pred ccccceeceEEEecCCCeEEEEecCccccee
Q 036621 103 SFKGLYCGIVFIEGLNNRITLWNIATRESIT 133 (376)
Q Consensus 103 ~~~~s~~Gll~~~~~~~~~~v~NP~T~~~~~ 133 (376)
.-+.-.||..|+....+..+..+|.||+...
T Consensus 34 s~VS~~~~~~C~s~~~~~~~~vDP~Tgra~s 64 (263)
T PF07861_consen 34 SSVSFAGGRACLSDTAGSVYTVDPLTGRAVS 64 (263)
T ss_pred EEEecCCceEEEecCCCceEEeccccccccc
Confidence 4566679999999988899999999987653
No 161
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=20.48 E-value=7.1e+02 Score=23.28 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=42.4
Q ss_pred eeEeCceEEEEecccCCCCceEEEEEEcCccceeeecCCCCCCCCCceEEEEECCeEEEEEEecCCCEEEEEEecC
Q 036621 211 RTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRK 286 (376)
Q Consensus 211 ~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~l~iW~l~~ 286 (376)
.|-++.+ |-.... ....|-++|.++.+|-.+-- .+. ..+.-...+|+|.+.+.+ +.++.+|....
T Consensus 325 vVdfd~k-yIVsAS----gDRTikvW~~st~efvRtl~-gHk---RGIAClQYr~rlvVSGSS--DntIRlwdi~~ 389 (499)
T KOG0281|consen 325 VVDFDDK-YIVSAS----GDRTIKVWSTSTCEFVRTLN-GHK---RGIACLQYRDRLVVSGSS--DNTIRLWDIEC 389 (499)
T ss_pred eeccccc-eEEEec----CCceEEEEeccceeeehhhh-ccc---ccceehhccCeEEEecCC--CceEEEEeccc
Confidence 4445556 333333 35588999999888755421 111 135556679999888887 88999998765
No 162
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=20.34 E-value=5.1e+02 Score=21.61 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=48.0
Q ss_pred ceEEEEEEcCccce-eeecCCCCCCCCCceEEEEE-CCeEEEEEEecCCCEEEEEEecCCceeeEEEEccCCceeEeEEE
Q 036621 230 SYVILSFNMADEKF-QEIQGPCILESSLDVTLGIY-YQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLF 307 (376)
Q Consensus 230 ~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~ 307 (376)
...|..||+.+.+. ..+...... ...+... +|+..++... +..+.+|.+.... .+..+........-+.+
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTGHTGE----VNSVAFSPDGEKLLSSSS--DGTIKLWDLSTGK--CLGTLRGHENGVNSVAF 227 (289)
T ss_pred CCcEEEEEccccccceeEecCccc----cceEEECCCcCEEEEecC--CCcEEEEECCCCc--eecchhhcCCceEEEEE
Confidence 34788888875432 223321110 1222222 4444444444 6789999886522 22222011111222444
Q ss_pred eeCCcEEEEec-CCEEEEEECCCCC
Q 036621 308 WKKGAFFVESN-SSQLLLYEPGTGE 331 (376)
Q Consensus 308 ~~~~~l~~~~~-~~~~~~yd~~~~~ 331 (376)
..++.+++... ++.+..||.++++
T Consensus 228 ~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 228 SPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred cCCCcEEEEEcCCCcEEEEEcCCce
Confidence 45566766665 7889999998654
Done!