Query 036627
Match_columns 219
No_of_seqs 127 out of 1263
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 03:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02473 glutathione S-transfe 100.0 3.7E-41 8.1E-46 253.6 23.1 208 5-213 3-211 (214)
2 PLN02395 glutathione S-transfe 100.0 4.2E-39 9.2E-44 242.6 22.8 211 1-215 1-212 (215)
3 PRK09481 sspA stringent starva 100.0 2.1E-39 4.5E-44 243.4 20.5 193 4-214 10-203 (211)
4 PRK15113 glutathione S-transfe 100.0 3E-38 6.5E-43 237.6 19.3 206 1-216 1-211 (214)
5 PRK13972 GSH-dependent disulfi 100.0 4.4E-38 9.5E-43 237.0 18.8 201 5-217 2-209 (215)
6 PRK10542 glutathionine S-trans 100.0 4.2E-37 9.2E-42 229.4 19.3 197 5-215 1-199 (201)
7 TIGR01262 maiA maleylacetoacet 100.0 1.9E-36 4.1E-41 227.4 21.3 205 6-217 1-208 (210)
8 PRK11752 putative S-transferas 100.0 1.2E-35 2.6E-40 229.3 21.5 203 4-216 44-261 (264)
9 COG0625 Gst Glutathione S-tran 100.0 1.6E-35 3.5E-40 222.4 21.2 194 5-208 1-199 (211)
10 KOG0868 Glutathione S-transfer 100.0 7.5E-36 1.6E-40 206.4 15.9 207 1-217 2-211 (217)
11 PRK10357 putative glutathione 100.0 2.3E-35 4.9E-40 220.3 19.7 198 5-213 1-200 (202)
12 KOG0406 Glutathione S-transfer 100.0 6.4E-35 1.4E-39 214.3 17.7 197 4-215 9-213 (231)
13 KOG0867 Glutathione S-transfer 100.0 1.2E-34 2.6E-39 218.6 19.1 205 4-213 2-209 (226)
14 PTZ00057 glutathione s-transfe 100.0 1E-33 2.2E-38 211.5 18.4 197 1-216 1-202 (205)
15 TIGR00862 O-ClC intracellular 100.0 6.2E-32 1.4E-36 203.4 18.5 183 11-215 17-222 (236)
16 KOG1695 Glutathione S-transfer 100.0 1.8E-31 3.9E-36 195.0 18.4 201 1-217 1-204 (206)
17 PLN02378 glutathione S-transfe 100.0 9.8E-32 2.1E-36 201.9 15.8 178 10-214 17-200 (213)
18 PRK10387 glutaredoxin 2; Provi 100.0 2.2E-31 4.7E-36 199.9 15.6 188 5-207 1-207 (210)
19 PLN02817 glutathione dehydroge 100.0 6.2E-31 1.3E-35 202.2 17.7 175 12-213 72-251 (265)
20 TIGR02182 GRXB Glutaredoxin, G 100.0 2.2E-29 4.7E-34 188.6 12.7 187 6-207 1-206 (209)
21 KOG4420 Uncharacterized conser 100.0 5.1E-29 1.1E-33 182.4 14.0 209 4-213 26-287 (325)
22 PLN02907 glutamate-tRNA ligase 99.9 3.8E-24 8.2E-29 183.2 18.8 164 1-213 1-172 (722)
23 KOG1422 Intracellular Cl- chan 99.9 1.4E-21 2.9E-26 139.6 14.1 179 12-215 20-207 (221)
24 cd03052 GST_N_GDAP1 GST_N fami 99.9 7.3E-22 1.6E-26 122.8 8.1 73 5-77 1-73 (73)
25 cd03045 GST_N_Delta_Epsilon GS 99.8 6.3E-21 1.4E-25 119.3 8.5 74 5-78 1-74 (74)
26 COG2999 GrxB Glutaredoxin 2 [P 99.8 5.5E-20 1.2E-24 127.8 12.7 186 5-208 1-208 (215)
27 cd03050 GST_N_Theta GST_N fami 99.8 1.7E-20 3.8E-25 117.9 9.0 76 5-80 1-76 (76)
28 PF13417 GST_N_3: Glutathione 99.8 1.8E-20 3.8E-25 117.5 8.6 74 7-83 1-74 (75)
29 cd03053 GST_N_Phi GST_N family 99.8 2E-20 4.3E-25 117.7 8.9 75 5-79 2-76 (76)
30 cd03048 GST_N_Ure2p_like GST_N 99.8 4.7E-20 1E-24 117.4 9.0 77 4-81 1-80 (81)
31 cd03056 GST_N_4 GST_N family, 99.8 4.7E-20 1E-24 115.0 8.1 73 5-77 1-73 (73)
32 cd03041 GST_N_2GST_N GST_N fam 99.8 4.5E-20 9.7E-25 116.2 7.2 75 4-80 1-77 (77)
33 cd03047 GST_N_2 GST_N family, 99.8 8.3E-20 1.8E-24 113.9 8.1 73 5-77 1-73 (73)
34 cd03059 GST_N_SspA GST_N famil 99.8 1.3E-19 2.9E-24 113.0 8.8 73 5-80 1-73 (73)
35 cd03058 GST_N_Tau GST_N family 99.8 1.8E-19 3.8E-24 112.7 8.7 73 5-80 1-74 (74)
36 cd03046 GST_N_GTT1_like GST_N 99.8 2.3E-19 5E-24 112.8 9.0 76 5-81 1-76 (76)
37 PF02798 GST_N: Glutathione S- 99.8 1.8E-19 3.9E-24 113.0 8.2 73 6-78 2-76 (76)
38 cd03061 GST_N_CLIC GST_N famil 99.8 1.5E-19 3.3E-24 115.5 7.9 69 11-82 20-88 (91)
39 cd03057 GST_N_Beta GST_N famil 99.8 2.4E-19 5.1E-24 113.0 8.8 76 5-81 1-77 (77)
40 cd03042 GST_N_Zeta GST_N famil 99.8 1.9E-19 4E-24 112.3 8.1 73 5-77 1-73 (73)
41 cd03076 GST_N_Pi GST_N family, 99.8 1.1E-19 2.5E-24 113.1 7.0 73 4-79 1-73 (73)
42 cd03051 GST_N_GTT2_like GST_N 99.8 1.7E-19 3.7E-24 112.8 7.7 73 5-77 1-74 (74)
43 cd03044 GST_N_EF1Bgamma GST_N 99.8 2.2E-19 4.7E-24 112.5 8.0 72 6-78 2-74 (75)
44 cd03039 GST_N_Sigma_like GST_N 99.8 4.2E-19 9E-24 110.4 6.8 72 5-78 1-72 (72)
45 KOG4244 Failed axon connection 99.8 8.2E-18 1.8E-22 124.5 14.5 183 5-204 46-273 (281)
46 cd03060 GST_N_Omega_like GST_N 99.8 1.2E-18 2.5E-23 108.0 8.1 68 6-76 2-70 (71)
47 cd03037 GST_N_GRX2 GST_N famil 99.8 1.2E-18 2.6E-23 108.0 7.0 70 5-78 1-71 (71)
48 cd03055 GST_N_Omega GST_N fami 99.8 2.8E-18 6.1E-23 110.9 8.3 73 2-77 16-89 (89)
49 cd03075 GST_N_Mu GST_N family, 99.8 2.8E-18 6E-23 109.1 8.0 75 6-80 2-82 (82)
50 PF13409 GST_N_2: Glutathione 99.8 3.4E-18 7.4E-23 105.4 8.1 68 12-79 1-70 (70)
51 cd03049 GST_N_3 GST_N family, 99.8 2.9E-18 6.3E-23 106.9 7.3 70 5-77 1-73 (73)
52 cd03077 GST_N_Alpha GST_N fami 99.7 9.2E-18 2E-22 106.0 8.2 72 4-81 1-77 (79)
53 cd03038 GST_N_etherase_LigE GS 99.7 8.4E-18 1.8E-22 107.6 8.1 70 11-81 14-84 (84)
54 cd03187 GST_C_Phi GST_C family 99.7 4.3E-17 9.2E-22 111.2 11.8 117 95-211 2-118 (118)
55 cd03080 GST_N_Metaxin_like GST 99.7 2.1E-17 4.5E-22 103.5 8.5 67 5-81 2-75 (75)
56 cd03040 GST_N_mPGES2 GST_N fam 99.7 1.9E-17 4.1E-22 104.3 8.0 72 4-80 1-76 (77)
57 cd03043 GST_N_1 GST_N family, 99.7 5.2E-17 1.1E-21 101.0 8.2 68 9-77 6-73 (73)
58 KOG3029 Glutathione S-transfer 99.7 1.1E-16 2.5E-21 119.1 11.1 195 4-203 90-354 (370)
59 cd03181 GST_C_EFB1gamma GST_C 99.7 2.8E-16 6E-21 108.0 10.8 120 96-219 2-122 (123)
60 cd03178 GST_C_Ure2p_like GST_C 99.7 3E-16 6.4E-21 106.2 10.1 112 95-211 1-112 (113)
61 cd03188 GST_C_Beta GST_C famil 99.7 3.2E-16 6.9E-21 106.2 9.0 113 95-211 2-114 (114)
62 COG0435 ECM4 Predicted glutath 99.7 1.2E-15 2.6E-20 113.6 12.5 197 4-213 51-286 (324)
63 cd03186 GST_C_SspA GST_N famil 99.7 8.6E-16 1.9E-20 102.9 10.1 105 94-210 2-106 (107)
64 cd03196 GST_C_5 GST_C family, 99.7 4.9E-16 1.1E-20 105.3 8.9 113 91-211 2-115 (115)
65 cd00570 GST_N_family Glutathio 99.7 4.5E-16 9.7E-21 95.9 7.8 71 5-77 1-71 (71)
66 cd03182 GST_C_GTT2_like GST_C 99.7 1.4E-15 2.9E-20 103.6 10.6 115 92-207 1-117 (117)
67 cd03180 GST_C_2 GST_C family, 99.7 2.4E-15 5.1E-20 101.2 11.5 109 95-207 2-110 (110)
68 cd03189 GST_C_GTT1_like GST_C 99.7 1.9E-15 4.2E-20 103.1 11.2 115 89-205 1-119 (119)
69 cd03191 GST_C_Zeta GST_C famil 99.7 2.5E-15 5.5E-20 102.9 11.6 117 94-214 2-120 (121)
70 cd03183 GST_C_Theta GST_C fami 99.6 1.9E-15 4E-20 104.3 10.4 117 96-213 2-122 (126)
71 cd03190 GST_C_ECM4_like GST_C 99.6 2.8E-15 6.1E-20 105.4 10.5 110 94-213 3-118 (142)
72 cd03054 GST_N_Metaxin GST_N fa 99.6 2.1E-15 4.5E-20 93.6 7.8 65 5-79 1-72 (72)
73 cd03209 GST_C_Mu GST_C family, 99.6 5.1E-15 1.1E-19 101.4 10.3 111 95-216 2-112 (121)
74 cd03185 GST_C_Tau GST_C family 99.6 3.9E-15 8.5E-20 102.7 9.2 110 94-214 2-116 (126)
75 cd03177 GST_C_Delta_Epsilon GS 99.6 6.7E-15 1.5E-19 100.3 9.5 110 95-212 2-111 (118)
76 cd03208 GST_C_Alpha GST_C fami 99.6 1.1E-14 2.4E-19 101.7 9.1 113 95-216 3-118 (137)
77 cd03210 GST_C_Pi GST_C family, 99.6 4.8E-14 1E-18 97.2 10.7 110 95-216 3-115 (126)
78 KOG2903 Predicted glutathione 99.6 3.3E-14 7.1E-19 105.0 10.1 196 4-212 37-287 (319)
79 cd03184 GST_C_Omega GST_C fami 99.6 1.2E-14 2.6E-19 99.9 7.3 108 95-215 2-115 (124)
80 cd03198 GST_C_CLIC GST_C famil 99.5 6.1E-14 1.3E-18 96.4 7.7 84 131-214 22-125 (134)
81 cd03207 GST_C_8 GST_C family, 99.5 2.9E-14 6.4E-19 94.8 6.0 76 135-213 27-102 (103)
82 cd03195 GST_C_4 GST_C family, 99.5 1.1E-13 2.3E-18 93.7 8.5 112 93-213 1-113 (114)
83 PF00043 GST_C: Glutathione S- 99.5 9.3E-14 2E-18 90.9 7.8 74 132-205 22-95 (95)
84 cd03179 GST_C_1 GST_C family, 99.5 6.6E-14 1.4E-18 93.3 6.9 104 95-202 2-105 (105)
85 KOG3027 Mitochondrial outer me 99.5 2.2E-12 4.7E-17 92.3 14.8 179 13-204 34-248 (257)
86 cd03203 GST_C_Lambda GST_C fam 99.5 1.4E-13 3E-18 94.0 8.5 105 92-214 1-112 (120)
87 PF13410 GST_C_2: Glutathione 99.5 3.3E-13 7E-18 83.0 8.1 67 134-200 2-69 (69)
88 cd03204 GST_C_GDAP1 GST_C fami 99.5 3.2E-13 6.9E-18 90.1 8.3 78 129-207 20-111 (111)
89 cd03200 GST_C_JTV1 GST_C famil 99.5 3.6E-13 7.8E-18 88.1 8.4 95 73-203 1-95 (96)
90 cd03206 GST_C_7 GST_C family, 99.5 5.2E-13 1.1E-17 88.3 8.9 99 100-207 2-100 (100)
91 cd03079 GST_N_Metaxin2 GST_N f 99.5 3.3E-13 7.1E-18 82.9 7.1 60 11-79 15-74 (74)
92 cd03194 GST_C_3 GST_C family, 99.4 2.8E-12 6E-17 86.8 10.2 103 105-212 9-113 (114)
93 cd03201 GST_C_DHAR GST_C famil 99.4 7.7E-13 1.7E-17 90.3 6.1 78 137-214 29-111 (121)
94 cd00299 GST_C_family Glutathio 99.3 7.6E-12 1.6E-16 82.3 7.1 98 100-201 2-100 (100)
95 cd03192 GST_C_Sigma_like GST_C 99.3 8.1E-12 1.7E-16 83.1 6.3 100 95-201 2-104 (104)
96 KOG3028 Translocase of outer m 99.3 5.6E-10 1.2E-14 85.3 16.8 180 12-204 16-234 (313)
97 TIGR02190 GlrX-dom Glutaredoxi 99.3 2E-11 4.3E-16 77.0 6.8 72 3-77 8-79 (79)
98 cd03202 GST_C_etherase_LigE GS 99.3 1.7E-11 3.7E-16 84.2 7.0 68 136-203 56-123 (124)
99 PF14497 GST_C_3: Glutathione 99.2 3.4E-11 7.3E-16 79.4 6.4 67 134-203 31-99 (99)
100 cd03193 GST_C_Metaxin GST_C fa 99.2 7.7E-11 1.7E-15 75.9 7.8 68 135-202 16-88 (88)
101 PRK10638 glutaredoxin 3; Provi 99.2 6.4E-11 1.4E-15 75.4 6.9 74 1-77 1-74 (83)
102 cd03078 GST_N_Metaxin1_like GS 99.2 1.5E-10 3.2E-15 71.6 7.7 58 12-79 15-72 (73)
103 cd03029 GRX_hybridPRX5 Glutare 99.1 3.8E-10 8.1E-15 69.8 7.3 71 4-77 2-72 (72)
104 PF14834 GST_C_4: Glutathione 99.1 1E-09 2.2E-14 71.9 9.4 113 92-213 1-114 (117)
105 cd03205 GST_C_6 GST_C family, 99.1 5.5E-10 1.2E-14 73.4 8.0 70 129-201 28-98 (98)
106 cd03211 GST_C_Metaxin2 GST_C f 99.1 2.2E-10 4.9E-15 78.7 5.8 71 132-202 51-126 (126)
107 cd03212 GST_C_Metaxin1_3 GST_C 99.0 1.5E-09 3.2E-14 75.7 7.7 72 132-203 58-134 (137)
108 cd03027 GRX_DEP Glutaredoxin ( 98.9 4.2E-09 9.1E-14 65.2 6.0 69 4-74 2-70 (73)
109 PRK10329 glutaredoxin-like pro 98.9 8.8E-09 1.9E-13 65.0 6.1 62 4-68 2-63 (81)
110 cd03197 GST_C_mPGES2 GST_C fam 98.9 9.1E-09 2E-13 71.6 6.5 64 140-203 81-145 (149)
111 cd02066 GRX_family Glutaredoxi 98.8 1.3E-08 2.8E-13 62.5 6.2 70 4-75 1-70 (72)
112 TIGR02196 GlrX_YruB Glutaredox 98.8 1.4E-08 3.1E-13 62.7 6.1 71 4-76 1-73 (74)
113 cd02976 NrdH NrdH-redoxin (Nrd 98.8 1.5E-08 3.2E-13 62.4 5.4 64 4-69 1-64 (73)
114 cd03418 GRX_GRXb_1_3_like Glut 98.8 2.9E-08 6.3E-13 61.7 6.3 72 4-77 1-73 (75)
115 COG0695 GrxC Glutaredoxin and 98.8 3.3E-08 7.1E-13 62.2 6.4 74 4-77 2-75 (80)
116 TIGR02181 GRX_bact Glutaredoxi 98.7 8.6E-08 1.9E-12 60.2 6.2 72 5-78 1-72 (79)
117 PRK11200 grxA glutaredoxin 1; 98.6 3.4E-07 7.3E-12 58.4 7.0 76 4-81 2-84 (85)
118 TIGR02200 GlrX_actino Glutared 98.6 1.5E-07 3.2E-12 58.7 5.1 65 4-70 1-67 (77)
119 TIGR02189 GlrX-like_plant Glut 98.6 2.9E-07 6.4E-12 60.4 6.5 73 3-75 8-81 (99)
120 TIGR02194 GlrX_NrdH Glutaredox 98.5 2E-07 4.3E-12 57.5 5.3 57 5-64 1-57 (72)
121 cd03419 GRX_GRXh_1_2_like Glut 98.5 3.8E-07 8.3E-12 57.6 6.7 75 4-78 1-76 (82)
122 TIGR02183 GRXA Glutaredoxin, G 98.5 6E-07 1.3E-11 57.3 6.9 75 5-81 2-83 (86)
123 PF00462 Glutaredoxin: Glutare 98.5 1.6E-07 3.5E-12 55.7 3.9 60 5-66 1-60 (60)
124 PHA03050 glutaredoxin; Provisi 98.5 7.1E-07 1.5E-11 59.4 6.8 72 3-74 13-88 (108)
125 TIGR00365 monothiol glutaredox 98.3 3.5E-06 7.5E-11 55.1 6.6 72 3-76 12-88 (97)
126 PF10568 Tom37: Outer mitochon 98.2 6.6E-06 1.4E-10 50.4 6.8 56 12-77 13-72 (72)
127 TIGR02180 GRX_euk Glutaredoxin 98.2 8.3E-06 1.8E-10 51.6 6.9 74 5-78 1-77 (84)
128 cd03028 GRX_PICOT_like Glutare 98.2 9.1E-06 2E-10 52.3 6.5 71 4-76 9-84 (90)
129 PF04399 Glutaredoxin2_C: Glut 98.0 4.6E-05 1E-09 52.3 8.3 68 136-207 57-124 (132)
130 cd03199 GST_C_GRX2 GST_C famil 97.9 0.00013 2.9E-09 49.6 7.9 66 138-207 60-125 (128)
131 cd03031 GRX_GRX_like Glutaredo 97.8 7.5E-05 1.6E-09 52.4 6.4 70 4-75 1-80 (147)
132 PRK12759 bifunctional gluaredo 97.8 9.4E-05 2E-09 61.0 7.1 70 1-74 1-79 (410)
133 PRK10824 glutaredoxin-4; Provi 97.6 0.00032 7E-09 47.0 6.5 72 3-76 15-91 (115)
134 cd02973 TRX_GRX_like Thioredox 97.5 0.0004 8.7E-09 41.8 5.9 58 4-67 2-64 (67)
135 KOG1752 Glutaredoxin and relat 97.5 0.00069 1.5E-08 44.5 6.6 76 2-77 13-89 (104)
136 PTZ00062 glutaredoxin; Provisi 97.4 0.00068 1.5E-08 50.3 6.7 71 3-75 113-188 (204)
137 KOG1147 Glutamyl-tRNA syntheta 97.2 0.00021 4.6E-09 59.2 2.6 119 61-211 43-162 (712)
138 COG4545 Glutaredoxin-related p 97.2 0.0017 3.6E-08 39.2 5.2 66 1-67 1-77 (85)
139 PRK01655 spxA transcriptional 96.9 0.0018 3.9E-08 44.7 4.4 32 5-36 2-33 (131)
140 cd03036 ArsC_like Arsenate Red 96.9 0.0017 3.6E-08 43.5 4.1 33 5-37 1-33 (111)
141 cd02977 ArsC_family Arsenate R 96.9 0.0021 4.4E-08 42.6 4.3 32 5-36 1-32 (105)
142 cd03032 ArsC_Spx Arsenate Redu 96.8 0.0025 5.4E-08 43.0 4.4 32 5-36 2-33 (115)
143 PRK10026 arsenate reductase; P 96.7 0.0032 6.9E-08 43.9 4.6 35 1-36 1-35 (141)
144 cd03030 GRX_SH3BGR Glutaredoxi 96.5 0.015 3.2E-07 37.5 6.2 68 5-74 2-79 (92)
145 PRK12559 transcriptional regul 96.5 0.0058 1.3E-07 42.2 4.5 32 5-36 2-33 (131)
146 PRK13344 spxA transcriptional 96.4 0.0064 1.4E-07 42.0 4.4 32 5-36 2-33 (132)
147 TIGR01617 arsC_related transcr 96.4 0.0061 1.3E-07 41.2 4.2 32 5-36 1-32 (117)
148 PF05768 DUF836: Glutaredoxin- 96.2 0.039 8.4E-07 34.6 6.8 55 4-63 1-57 (81)
149 cd03035 ArsC_Yffb Arsenate Red 96.2 0.0097 2.1E-07 39.4 4.2 32 5-36 1-32 (105)
150 cd03033 ArsC_15kD Arsenate Red 96.0 0.012 2.7E-07 39.4 4.2 32 5-36 2-33 (113)
151 cd03026 AhpF_NTD_C TRX-GRX-lik 95.9 0.034 7.3E-07 35.6 5.6 58 4-67 15-77 (89)
152 COG1393 ArsC Arsenate reductas 95.9 0.018 4E-07 38.8 4.5 33 4-36 2-34 (117)
153 TIGR00412 redox_disulf_2 small 95.8 0.067 1.5E-06 33.0 6.6 55 5-67 3-61 (76)
154 TIGR01616 nitro_assoc nitrogen 95.6 0.025 5.4E-07 38.7 4.4 33 4-36 2-34 (126)
155 PRK10853 putative reductase; P 95.5 0.026 5.7E-07 38.2 4.2 32 5-36 2-33 (118)
156 TIGR00411 redox_disulf_1 small 95.5 0.081 1.8E-06 32.8 6.2 57 4-64 2-62 (82)
157 COG0278 Glutaredoxin-related p 95.3 0.058 1.3E-06 34.8 5.0 71 4-76 16-92 (105)
158 PHA02125 thioredoxin-like prot 95.0 0.12 2.5E-06 31.8 5.7 53 5-64 2-54 (75)
159 cd03034 ArsC_ArsC Arsenate Red 94.9 0.052 1.1E-06 36.3 4.2 32 5-36 1-32 (112)
160 TIGR00014 arsC arsenate reduct 94.8 0.056 1.2E-06 36.3 4.2 32 5-36 1-32 (114)
161 PF13192 Thioredoxin_3: Thiore 94.7 0.23 5E-06 30.5 6.6 57 5-69 3-63 (76)
162 PF11801 Tom37_C: Tom37 C-term 93.5 0.25 5.4E-06 35.7 5.5 39 143-181 113-155 (168)
163 cd01659 TRX_superfamily Thiore 93.1 0.33 7.1E-06 27.5 4.9 53 5-60 1-58 (69)
164 PF11287 DUF3088: Protein of u 92.7 0.56 1.2E-05 31.0 5.7 69 12-83 23-110 (112)
165 PF04908 SH3BGR: SH3-binding, 92.7 0.3 6.5E-06 31.8 4.5 66 5-72 3-83 (99)
166 PF03960 ArsC: ArsC family; I 88.2 0.71 1.5E-05 30.6 3.3 29 8-36 1-29 (110)
167 cd02947 TRX_family TRX family; 86.1 5.6 0.00012 24.3 6.7 55 5-65 14-75 (93)
168 KOG0911 Glutaredoxin-related p 85.5 1.7 3.7E-05 32.6 4.3 65 10-76 151-215 (227)
169 TIGR03143 AhpF_homolog putativ 84.9 2.7 5.8E-05 36.6 5.9 58 4-67 479-541 (555)
170 cd02949 TRX_NTR TRX domain, no 84.3 5.8 0.00012 25.3 6.1 58 5-66 17-80 (97)
171 TIGR01295 PedC_BrcD bacterioci 82.0 13 0.00029 25.1 7.4 62 5-66 27-103 (122)
172 TIGR03140 AhpF alkyl hydropero 81.5 1.5 3.4E-05 37.6 3.2 64 4-68 120-183 (515)
173 cd02953 DsbDgamma DsbD gamma f 81.3 4.1 8.9E-05 26.3 4.6 55 5-60 15-77 (104)
174 PRK15317 alkyl hydroperoxide r 80.7 1.8 3.9E-05 37.2 3.3 72 4-79 119-197 (517)
175 PF00085 Thioredoxin: Thioredo 80.3 12 0.00027 23.6 8.9 70 5-78 21-102 (103)
176 cd02989 Phd_like_TxnDC9 Phosdu 80.2 11 0.00023 25.1 6.3 61 5-69 26-91 (113)
177 PHA03075 glutaredoxin-like pro 78.5 4.9 0.00011 26.8 4.0 69 1-80 1-70 (123)
178 cd02975 PfPDO_like_N Pyrococcu 78.3 7 0.00015 26.0 5.0 52 5-60 25-80 (113)
179 KOG1668 Elongation factor 1 be 72.4 3.3 7E-05 31.3 2.3 59 144-208 10-68 (231)
180 cd02984 TRX_PICOT TRX domain, 71.6 19 0.00041 22.6 5.6 58 5-66 18-81 (97)
181 PTZ00051 thioredoxin; Provisio 71.4 22 0.00047 22.4 5.9 58 5-66 22-84 (98)
182 TIGR02187 GlrX_arch Glutaredox 69.0 13 0.00027 27.9 4.9 53 5-61 137-192 (215)
183 PF09635 MetRS-N: MetRS-N bind 68.8 2.9 6.3E-05 28.2 1.2 26 56-81 36-63 (122)
184 cd02963 TRX_DnaJ TRX domain, D 64.5 37 0.00081 22.2 6.5 57 5-65 28-91 (111)
185 PF11732 Thoc2: Transcription- 62.1 13 0.00028 23.0 3.1 43 157-202 34-76 (77)
186 PF04134 DUF393: Protein of un 61.9 29 0.00062 22.8 5.1 72 7-79 1-77 (114)
187 cd02959 ERp19 Endoplasmic reti 59.6 50 0.0011 22.0 6.3 59 5-67 23-91 (117)
188 TIGR02681 phage_pRha phage reg 59.1 10 0.00023 25.1 2.5 26 56-81 2-28 (108)
189 COG3011 Predicted thiol-disulf 57.0 64 0.0014 22.5 6.1 74 3-80 8-87 (137)
190 cd04911 ACT_AKiii-YclM-BS_1 AC 56.5 13 0.00028 22.9 2.4 26 13-38 15-40 (76)
191 TIGR02187 GlrX_arch Glutaredox 55.5 50 0.0011 24.7 6.0 57 5-65 23-89 (215)
192 COG3019 Predicted metal-bindin 55.1 25 0.00054 24.5 3.8 72 4-81 27-105 (149)
193 cd02962 TMX2 TMX2 family; comp 55.0 73 0.0016 22.5 6.7 60 5-68 51-123 (152)
194 COG2761 FrnE Predicted dithiol 54.8 9.8 0.00021 28.8 2.0 22 4-25 7-28 (225)
195 PRK09381 trxA thioredoxin; Pro 54.4 56 0.0012 21.0 7.4 58 5-66 25-88 (109)
196 PHA02278 thioredoxin-like prot 53.6 60 0.0013 21.1 7.0 62 5-66 18-85 (103)
197 cd02948 TRX_NDPK TRX domain, T 53.4 34 0.00075 21.9 4.3 57 5-66 21-84 (102)
198 cd02956 ybbN ybbN protein fami 51.2 58 0.0013 20.3 7.0 57 5-65 16-78 (96)
199 cd02997 PDI_a_PDIR PDIa family 50.8 38 0.00082 21.4 4.2 58 5-64 21-86 (104)
200 cd02951 SoxW SoxW family; SoxW 49.6 75 0.0016 21.1 5.8 16 5-20 18-33 (125)
201 PRK03731 aroL shikimate kinase 47.7 28 0.00061 24.7 3.5 33 1-33 1-33 (171)
202 cd02955 SSP411 TRX domain, SSP 47.3 85 0.0018 21.3 5.5 65 5-69 19-97 (124)
203 PF01323 DSBA: DSBA-like thior 47.0 47 0.001 23.9 4.6 35 4-38 1-40 (193)
204 PRK10996 thioredoxin 2; Provis 46.9 93 0.002 21.4 7.2 58 5-66 56-119 (139)
205 KOG2824 Glutaredoxin-related p 46.1 27 0.00059 27.3 3.2 68 5-74 133-210 (281)
206 cd03003 PDI_a_ERdj5_N PDIa fam 45.8 76 0.0017 20.1 6.1 56 5-64 22-83 (101)
207 cd03021 DsbA_GSTK DsbA family, 42.9 48 0.001 24.6 4.2 36 3-38 1-40 (209)
208 cd02954 DIM1 Dim1 family; Dim1 42.9 1E+02 0.0022 20.7 6.1 58 5-66 18-81 (114)
209 cd03024 DsbA_FrnE DsbA family, 42.0 38 0.00083 24.7 3.5 34 5-38 1-42 (201)
210 cd03004 PDI_a_ERdj5_C PDIa fam 41.0 91 0.002 19.8 4.9 52 5-60 23-78 (104)
211 PF10022 DUF2264: Uncharacteri 40.6 1.6E+02 0.0035 24.3 7.0 104 57-172 99-206 (361)
212 cd02957 Phd_like Phosducin (Ph 40.2 52 0.0011 21.6 3.6 64 5-73 28-96 (113)
213 TIGR01068 thioredoxin thioredo 39.7 92 0.002 19.3 8.5 56 5-64 18-79 (101)
214 cd03020 DsbA_DsbC_DsbG DsbA fa 38.5 49 0.0011 24.3 3.6 22 4-25 80-101 (197)
215 cd02978 KaiB_like KaiB-like fa 38.2 87 0.0019 19.1 4.0 53 4-60 3-60 (72)
216 PRK11657 dsbG disulfide isomer 37.7 57 0.0012 25.2 3.9 20 5-24 121-140 (251)
217 cd02972 DsbA_family DsbA famil 37.5 56 0.0012 19.9 3.4 22 5-26 1-22 (98)
218 PF15608 PELOTA_1: PELOTA RNA 35.6 82 0.0018 20.6 3.7 31 5-35 58-88 (100)
219 PF13098 Thioredoxin_2: Thiore 35.6 35 0.00075 22.1 2.2 34 5-38 9-49 (112)
220 PF09413 DUF2007: Domain of un 34.8 50 0.0011 19.3 2.6 31 6-36 2-32 (67)
221 PRK10877 protein disulfide iso 34.7 70 0.0015 24.4 4.0 23 4-26 110-132 (232)
222 PRK13947 shikimate kinase; Pro 34.2 59 0.0013 23.0 3.4 32 1-33 1-32 (171)
223 PRK09266 hypothetical protein; 33.9 42 0.0009 26.1 2.7 60 22-81 200-259 (266)
224 COG0703 AroK Shikimate kinase 33.9 68 0.0015 23.3 3.5 35 1-35 1-35 (172)
225 PRK13949 shikimate kinase; Pro 31.9 69 0.0015 22.9 3.4 33 1-34 1-33 (169)
226 TIGR01764 excise DNA binding d 31.8 84 0.0018 16.4 3.1 25 53-77 24-48 (49)
227 PF03514 GRAS: GRAS domain fam 31.4 3E+02 0.0065 22.7 8.9 58 143-203 264-321 (374)
228 KOG4023 Uncharacterized conser 31.3 1E+02 0.0022 20.2 3.6 76 4-79 3-99 (108)
229 TIGR01130 ER_PDI_fam protein d 31.2 3.1E+02 0.0068 22.8 7.9 73 5-81 22-110 (462)
230 cd02987 Phd_like_Phd Phosducin 31.1 1.3E+02 0.0027 21.8 4.6 65 5-74 87-156 (175)
231 TIGR03493 cellullose_BcsF cell 30.2 86 0.0019 18.4 2.8 45 165-209 1-46 (62)
232 cd02994 PDI_a_TMX PDIa family, 30.1 1.4E+02 0.0031 18.7 5.9 53 4-60 19-76 (101)
233 PF13281 DUF4071: Domain of un 29.9 3.3E+02 0.0071 22.7 12.8 20 138-157 117-136 (374)
234 cd03022 DsbA_HCCA_Iso DsbA fam 29.4 93 0.002 22.3 3.8 33 5-37 1-37 (192)
235 cd02999 PDI_a_ERp44_like PDIa 29.3 78 0.0017 20.3 3.0 53 5-60 22-77 (100)
236 PTZ00102 disulphide isomerase; 29.3 3.5E+02 0.0076 22.8 8.4 74 5-82 53-140 (477)
237 cd02965 HyaE HyaE family; HyaE 29.2 1.4E+02 0.0031 19.8 4.3 60 5-68 31-98 (111)
238 cd02950 TxlA TRX-like protein 28.8 1.6E+02 0.0034 20.3 4.7 60 5-66 24-90 (142)
239 PF11823 DUF3343: Protein of u 28.5 1.3E+02 0.0028 18.0 3.8 32 6-37 4-35 (73)
240 cd03005 PDI_a_ERp46 PDIa famil 28.4 1.5E+02 0.0033 18.4 6.3 56 5-64 20-84 (102)
241 PRK15371 effector protein YopJ 28.3 2.2E+02 0.0047 22.7 5.7 45 138-183 23-67 (287)
242 COG3118 Thioredoxin domain-con 28.1 2.7E+02 0.0058 22.3 6.1 74 5-82 47-132 (304)
243 PF12290 DUF3802: Protein of u 28.0 1.2E+02 0.0025 20.3 3.5 26 131-156 57-82 (113)
244 PF12062 HSNSD: heparan sulfat 27.8 1.8E+02 0.0038 25.0 5.3 51 5-70 63-118 (487)
245 PRK09301 circadian clock prote 27.5 1.7E+02 0.0037 19.3 4.2 52 5-60 9-65 (103)
246 PRK14531 adenylate kinase; Pro 27.4 89 0.0019 22.6 3.4 30 1-30 1-30 (183)
247 cd02996 PDI_a_ERp44 PDIa famil 26.7 1.8E+02 0.0039 18.6 5.4 56 5-64 22-89 (108)
248 cd03006 PDI_a_EFP1_N PDIa fami 25.1 1.7E+02 0.0037 19.4 4.1 52 5-60 33-89 (113)
249 PRK14368 Maf-like protein; Pro 25.0 1.4E+02 0.0031 22.1 4.0 36 1-39 1-36 (193)
250 cd02993 PDI_a_APS_reductase PD 24.8 1.6E+02 0.0035 19.0 4.0 53 5-60 25-83 (109)
251 PF00392 GntR: Bacterial regul 24.6 97 0.0021 17.9 2.6 27 145-171 4-31 (64)
252 cd00449 PLPDE_IV PyridoxaL 5'- 24.6 74 0.0016 24.3 2.7 58 22-79 196-255 (256)
253 PRK06092 4-amino-4-deoxychoris 24.6 1E+02 0.0022 23.9 3.4 58 22-80 208-265 (268)
254 cd02961 PDI_a_family Protein D 24.2 1.8E+02 0.0038 17.7 5.9 52 5-60 19-76 (101)
255 PF09314 DUF1972: Domain of un 23.9 79 0.0017 23.3 2.5 20 62-81 154-173 (185)
256 COG3433 Aryl carrier domain [S 23.5 1.5E+02 0.0032 18.2 3.1 36 170-205 32-70 (74)
257 PRK00293 dipZ thiol:disulfide 23.5 5.1E+02 0.011 22.9 7.7 55 5-60 478-539 (571)
258 cd01557 BCAT_beta_family BCAT_ 23.3 57 0.0012 25.6 1.8 59 22-80 211-273 (279)
259 cd02995 PDI_a_PDI_a'_C PDIa fa 22.8 72 0.0016 20.0 2.0 51 5-60 22-78 (104)
260 PF04564 U-box: U-box domain; 22.5 65 0.0014 19.4 1.6 27 53-80 13-39 (73)
261 PF00004 AAA: ATPase family as 22.0 1.9E+02 0.0041 18.9 4.1 30 5-34 1-30 (132)
262 PF07862 Nif11: Nitrogen fixat 21.4 97 0.0021 16.9 2.0 22 192-213 4-25 (49)
263 PF12728 HTH_17: Helix-turn-he 20.7 1.6E+02 0.0034 15.9 3.5 28 52-79 23-50 (51)
264 PRK06217 hypothetical protein; 20.4 1.4E+02 0.0029 21.6 3.2 29 1-30 1-29 (183)
265 PF03421 YopJ: YopJ Serine/Thr 20.4 3E+02 0.0065 20.1 4.9 41 142-183 3-43 (177)
266 PF06110 DUF953: Eukaryotic pr 20.4 1.1E+02 0.0025 20.6 2.5 67 10-76 35-112 (119)
267 cd03000 PDI_a_TMX3 PDIa family 20.3 2.4E+02 0.0053 17.8 6.1 52 5-60 19-77 (104)
268 PRK13356 aminotransferase; Pro 20.1 97 0.0021 24.3 2.5 58 22-80 221-278 (286)
269 cd03025 DsbA_FrnE_like DsbA fa 20.1 2E+02 0.0043 20.6 4.1 35 4-38 2-42 (193)
No 1
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=3.7e-41 Score=253.61 Aligned_cols=208 Identities=40% Similarity=0.766 Sum_probs=175.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhcccCC
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFKEAG 84 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~~~~ 84 (219)
|+||+++.||+++|++++|+++||+|+.+.++...++++.+++..+||.|+||+|+++|.+|+||.+|++||++.++..+
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~~ 82 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQG 82 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCcC
Confidence 89999999999999999999999999999999988888899999999999999999999999999999999999997543
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCC
Q 036627 85 TDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDF 164 (219)
Q Consensus 85 ~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 164 (219)
.+|+ |+++.+++++++|+.+..+.+.......+......+..+...+....+...+++.+.++.||+.|++++|++|++
T Consensus 83 ~~l~-p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~ 161 (214)
T PLN02473 83 TDLL-GKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGDE 161 (214)
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 4689 888999999999999888777655443333333322223344556667777889999999999999889999999
Q ss_pred ccHHHhhhhhHHHHHhhCC-CchhhhcchhHHHHHHHHhcCcchHHHhhc
Q 036627 165 YSLADLHHLPYTYYFMKTP-CASIISERAHVKAWWEDISSRPAFNKVSEG 213 (219)
Q Consensus 165 ~t~AD~~~~~~l~~~~~~~-~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 213 (219)
+|+||+++++.+.++.... ...+.+.+|+|.+|++++.++|+|++++..
T Consensus 162 ~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 162 FTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred CCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 9999999999998765432 223468899999999999999999999875
No 2
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=4.2e-39 Score=242.63 Aligned_cols=211 Identities=47% Similarity=0.836 Sum_probs=173.3
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhc
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKF 80 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~ 80 (219)
|+ ++||+.+. ++++|++++|+++|++|+.+.++...+++++++|+++||.|+||+|+++|.+|+||.+|++||++++
T Consensus 1 ~~--~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 1 MV--LKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred Ce--EEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHc
Confidence 65 89999765 5799999999999999999999987777788999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCee
Q 036627 81 KEAGTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYL 160 (219)
Q Consensus 81 ~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 160 (219)
+..+++++ |.++.+++++++|+.+....+...+.............+...++...+...+.+.+.++.||+.|++++|+
T Consensus 78 ~~~~~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 156 (215)
T PLN02395 78 RSQGPDLL-GKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYL 156 (215)
T ss_pred CCCCcCcC-CCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 75434699 88999999999999998887776654443322221111223344556677888999999999999989999
Q ss_pred ccCCccHHHhhhhhHHHHHhhC-CCchhhhcchhHHHHHHHHhcCcchHHHhhccC
Q 036627 161 AGDFYSLADLHHLPYTYYFMKT-PCASIISERAHVKAWWEDISSRPAFNKVSEGMN 215 (219)
Q Consensus 161 ~G~~~t~AD~~~~~~l~~~~~~-~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 215 (219)
+|+++|+||+++++++.++... +.......+|+|.+|++++.++|++++++.+..
T Consensus 157 ~G~~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~~~ 212 (215)
T PLN02395 157 AGDFVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAKYS 212 (215)
T ss_pred cCCCcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHHHhc
Confidence 9999999999999998877532 222346779999999999999999999987643
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=2.1e-39 Score=243.39 Aligned_cols=193 Identities=19% Similarity=0.291 Sum_probs=162.2
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhcccC
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFKEA 83 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~~~ 83 (219)
+|+||+++.||+|++++++|+++||+|+.+.+++. +++++|+++||.|+||+|+++|.+|+||.||++||+++++..
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~ 86 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD---NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHP 86 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc---cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999999874 466899999999999999999999999999999999999854
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccC
Q 036627 84 GTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGD 163 (219)
Q Consensus 84 ~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 163 (219)
.|+ |.++.+++++.+|+.++...+....... . ..++...+...+.+.+.+..+|++|++++|++|+
T Consensus 87 --~l~-p~~~~~ra~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~ 152 (211)
T PRK09481 87 --PLM-PVYPVARGESRLMMHRIEKDWYSLMNKI------V-----NGSASEADAARKQLREELLAIAPVFGEKPYFMSE 152 (211)
T ss_pred --CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH------h-----cCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCC
Confidence 699 8889999999999987665432221111 0 1123455667778889999999999999999999
Q ss_pred CccHHHhhhhhHHHHHhhCCCchhh-hcchhHHHHHHHHhcCcchHHHhhcc
Q 036627 164 FYSLADLHHLPYTYYFMKTPCASII-SERAHVKAWWEDISSRPAFNKVSEGM 214 (219)
Q Consensus 164 ~~t~AD~~~~~~l~~~~~~~~~~~~-~~~p~l~~~~~~~~~~p~~~~~~~~~ 214 (219)
++|+||+++++.+.++...+ ..+. ..+|+|++|++++.+||+|++++...
T Consensus 153 ~~t~AD~~l~~~~~~~~~~~-~~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~ 203 (211)
T PRK09481 153 EFSLVDCYLAPLLWRLPVLG-IELSGPGAKELKGYMTRVFERDSFLASLTEA 203 (211)
T ss_pred CccHHHHHHHHHHHHHHhcC-CCCCCCCChhHHHHHHHHhccHHHHHHcCHH
Confidence 99999999999998877544 2332 57899999999999999999988653
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=3e-38 Score=237.57 Aligned_cols=206 Identities=20% Similarity=0.237 Sum_probs=165.1
Q ss_pred CCC-ceEEEecC--CChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 1 MTT-LIKLYGAP--VSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 1 M~~-~~~Ly~~~--~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
|+. +++||+.+ .||+|+|++++|+++||+|+.+.+++..+++..++|+++||.|+||+|++||.+|+||.||++||+
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 554 58899976 699999999999999999999999998888888999999999999999999999999999999999
Q ss_pred HhcccCC-CCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 036627 78 EKFKEAG-TDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSS 156 (219)
Q Consensus 78 ~~~~~~~-~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~ 156 (219)
++++.+. ++++ |.++.+++++++|+.+....+............ +....+....+...+.+.+.++.+|++|++
T Consensus 81 ~~~~~~~~~~l~-p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~le~~L~~ 155 (214)
T PRK15113 81 ERFAPPAWERIY-PADLQARARARQIQAWLRSDLMPLREERPTDVV----FAGAKKAPLSEAGKAAAEKLFAVAERLLAP 155 (214)
T ss_pred HHcCCCCccccC-CCCHHHHHHHHHHHHHHHhhhHHHhccCccchh----ccCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 9997541 1399 899999999999999887665432211000000 111122334455667788999999999985
Q ss_pred -CCeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhhccCC
Q 036627 157 -AKYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSEGMNF 216 (219)
Q Consensus 157 -~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 216 (219)
++|++|+ +|+||+++++++.++...+ ... .|+|.+|++++.+||+|++++++.+.
T Consensus 156 ~~~~l~G~-~TlADi~l~~~l~~~~~~~-~~~---~p~l~~~~~r~~~rp~~~~~~~~~~~ 211 (214)
T PRK15113 156 GQPNLFGE-WCIADTDLALMLNRLVLHG-DEV---PERLADYATFQWQRASVQRWLALSAK 211 (214)
T ss_pred CCCEeeCC-ccHHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 5799996 9999999999998876543 221 29999999999999999999987664
No 5
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=4.4e-38 Score=236.95 Aligned_cols=201 Identities=28% Similarity=0.447 Sum_probs=162.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEe-----CC--eeeechHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLED-----GD--LTLFESRAMTAYVA 77 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-----~~--~~i~es~aI~~yL~ 77 (219)
++||+.+ +++|++|+++|+++||+|+.+.+++..+++..++|+++||.|+||+|++ +| .+|+||.||++||+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 7899887 7999999999999999999999998877777899999999999999986 45 47999999999999
Q ss_pred HhcccCCCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 036627 78 EKFKEAGTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSA 157 (219)
Q Consensus 78 ~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 157 (219)
+.++ .+. |.++.+++++.+|+.+..+.+.+.+..... +... ....++...+.....+.+.|..||++|+++
T Consensus 81 ~~~~----~l~-p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 151 (215)
T PRK13972 81 EKTG----LFL-SHETRERAATLQWLFWQVGGLGPMLGQNHH--FNHA--APQTIPYAIERYQVETQRLYHVLNKRLENS 151 (215)
T ss_pred HhcC----CCC-CCCHHHHHHHHHHHHHHhhccCcceeeeee--eecc--CCCCCchHHHHHHHHHHHHHHHHHHHhccC
Confidence 9975 366 888999999999999988777654422100 0000 112234455666777889999999999999
Q ss_pred CeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhhccCCC
Q 036627 158 KYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSEGMNFG 217 (219)
Q Consensus 158 ~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 217 (219)
+|++|+++|+|||++++.+....... .. ...+|+|.+|++++.+||+|++++.....+
T Consensus 152 ~~l~Gd~~t~ADi~l~~~~~~~~~~~-~~-~~~~P~l~~w~~r~~~rp~~~~~~~~~~~~ 209 (215)
T PRK13972 152 PWLGGENYSIADIACWPWVNAWTRQR-ID-LAMYPAVKNWHERIRSRPATGQALLKAQLG 209 (215)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhhcC-Cc-chhCHHHHHHHHHHHhCHHHHHHHHHhccc
Confidence 99999999999999988875544332 22 578999999999999999999998876543
No 6
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=4.2e-37 Score=229.44 Aligned_cols=197 Identities=21% Similarity=0.367 Sum_probs=162.1
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCC-CCCcchhhhCCCCCCCeEE-eCCeeeechHHHHHHHHHhccc
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCE-HKQPPFLAKNPFGQIPVLE-DGDLTLFESRAMTAYVAEKFKE 82 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~-~~~~~i~es~aI~~yL~~~~~~ 82 (219)
|+||+.+.| ++++++++|+++||+|+.+.+++..++ ++.++|.++||.|+||||+ +||.+|+||.+|++||+++++.
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 589998865 799999999999999999999987553 4568899999999999998 6889999999999999999985
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeecc
Q 036627 83 AGTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAG 162 (219)
Q Consensus 83 ~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 162 (219)
. .+++|.++.+++++.+|+.+..+.+.+.+...+ .....+.......+.+.+.|+.+|+.|++++|++|
T Consensus 80 ~--~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 148 (201)
T PRK10542 80 R--QLLAPVGSLSRYHTIEWLNYIATELHKGFTPLF---------RPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICG 148 (201)
T ss_pred c--ccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhcc---------CCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeC
Confidence 4 566466788999999999987766654332221 11122334456677889999999999999999999
Q ss_pred CCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhhccC
Q 036627 163 DFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSEGMN 215 (219)
Q Consensus 163 ~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 215 (219)
+++|+||+++++++.+....+ .. ...+|+|.+|++++.++|+|++++.+..
T Consensus 149 ~~~s~ADi~l~~~~~~~~~~~-~~-~~~~p~l~~w~~~~~~~p~~k~~~~~~~ 199 (201)
T PRK10542 149 QRFTIADAYLFTVLRWAYAVK-LN-LEGLEHIAAYMQRVAERPAVAAALKAEG 199 (201)
T ss_pred CCCcHHhHHHHHHHHHhhccC-CC-cccchHHHHHHHHHHcCHHHHHHHHHcc
Confidence 999999999999998886554 22 4679999999999999999999998754
No 7
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=1.9e-36 Score=227.39 Aligned_cols=205 Identities=26% Similarity=0.368 Sum_probs=164.3
Q ss_pred EEEecCCChhHHHHHHHHHHcCCccEEEEecCC-CCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhcccCC
Q 036627 6 KLYGAPVSTCTARVMTCLHEKAVDFALVPVDLF-SCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFKEAG 84 (219)
Q Consensus 6 ~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~-~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~~~~ 84 (219)
+||++..||+++++|++|+++||+|+.+.+++. .+++..+++.++||.|+||+|+++|.+|+||.+|++||++.++..
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~- 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDP- 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCC-
Confidence 589998999999999999999999999999873 235567889999999999999999999999999999999999854
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC--CCeecc
Q 036627 85 TDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSS--AKYLAG 162 (219)
Q Consensus 85 ~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G 162 (219)
.++ |.++.+++++++|+.++...+........... .....+ ..+....+...+.+.+.|+.||++|++ ++|++|
T Consensus 80 -~l~-p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G 155 (210)
T TIGR01262 80 -PLL-PADPIKRARVRALALLIACDIHPLNNLRVLQY-LREKLG-VEEEARNRWYQHWISKGFAALEALLQPHAGAFCVG 155 (210)
T ss_pred -CCC-CCCHHHHHHHHHHHHHHhcccChhhhhhHHHH-HHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeC
Confidence 699 88899999999999988766655322111111 111001 112223444566788999999999986 469999
Q ss_pred CCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhhccCCC
Q 036627 163 DFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSEGMNFG 217 (219)
Q Consensus 163 ~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 217 (219)
+++|+||+++++++.++.... .. .+.+|+|++|+++|.+||++++++....+.
T Consensus 156 ~~~T~ADi~~~~~l~~~~~~~-~~-~~~~p~l~~~~~~~~~rp~~~~~~~~~~~~ 208 (210)
T TIGR01262 156 DTPTLADLCLVPQVYNAERFG-VD-LTPYPTLRRIAAALAALPAFQRAHPENQPD 208 (210)
T ss_pred CCCCHHHHHHHHHHHHHHHcC-CC-cccchHHHHHHHHHhcCHHHHHhCcccCCC
Confidence 999999999999998876543 22 478999999999999999999999887654
No 8
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=1.2e-35 Score=229.34 Aligned_cols=203 Identities=22% Similarity=0.338 Sum_probs=162.0
Q ss_pred ceEEEecCCChhHHHHHHHHHHc------CCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeC----CeeeechHHHH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEK------AVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDG----DLTLFESRAMT 73 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~------gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~----~~~i~es~aI~ 73 (219)
+|+||+.+ ||+|+||+++|+++ |++|+.+.+++..+++..++|.++||.|+||+|+++ |.+|+||.||+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 69999976 99999999999997 899999999988777788999999999999999964 36899999999
Q ss_pred HHHHHhcccCCCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 036627 74 AYVAEKFKEAGTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAK 153 (219)
Q Consensus 74 ~yL~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~ 153 (219)
+||++.++ +|+ |.++.+++++++|+.+..... ..+...+...+.. .....+...+....++.+.|+.||++
T Consensus 123 ~YL~~~~~----~L~-P~~~~era~v~~wl~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~le~~ 193 (264)
T PRK11752 123 LYLAEKFG----AFL-PKDLAARTETLNWLFWQQGSA-PFLGGGFGHFYAY---APEKIEYAINRFTMEAKRQLDVLDKQ 193 (264)
T ss_pred HHHHHhcC----CcC-CCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHh---CCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999986 489 889999999999999876543 2111111111100 11222345566677788999999999
Q ss_pred hcCCCeeccCCccHHHhhhhhHHHHHhhC---CC--chhhhcchhHHHHHHHHhcCcchHHHhhccCC
Q 036627 154 LSSAKYLAGDFYSLADLHHLPYTYYFMKT---PC--ASIISERAHVKAWWEDISSRPAFNKVSEGMNF 216 (219)
Q Consensus 154 L~~~~~l~G~~~t~AD~~~~~~l~~~~~~---~~--~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 216 (219)
|++++|++|+++|+|||++++.+.++... .. ....+.+|+|++|+++|.++|+|++++..++.
T Consensus 194 L~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~~~ 261 (264)
T PRK11752 194 LAEHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVNRT 261 (264)
T ss_pred hccCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcccc
Confidence 99989999999999999999988776432 11 11246799999999999999999999987764
No 9
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-35 Score=222.42 Aligned_cols=194 Identities=32% Similarity=0.571 Sum_probs=168.0
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCe-eeechHHHHHHHHHhcccC
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDL-TLFESRAMTAYVAEKFKEA 83 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~-~i~es~aI~~yL~~~~~~~ 83 (219)
++||+.+.||+|.|+++++.++|++|+.+.++... ++..++|..+||.|+||+|+++|. +|+||.||++||++.++.+
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 58999999999999999999999999999999987 778899999999999999996665 9999999999999999864
Q ss_pred CCCCCCCCChH---HHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHHHHHHHHHhhcCCCe
Q 036627 84 GTDLIRHHDLK---EAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSP-DQGVIDANLEKLSKVLDVYEAKLSSAKY 159 (219)
Q Consensus 84 ~~~l~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~ 159 (219)
+++ |.++. +++++..|+.+....+.+.+....... ... ... +....+.....+...+..+|+.|++++|
T Consensus 80 --~l~-p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 152 (211)
T COG0625 80 --PLL-PADPLARRARALLLWWLFFAASDLHPVIGQRRRAL-LGS---EPELLEAALEAARAEIRALLALLEALLADGPY 152 (211)
T ss_pred --CcC-CCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhh-ccc---cccccHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 388 87764 888999999999888888877666554 222 112 5677888889999999999999999999
Q ss_pred eccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchH
Q 036627 160 LAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFN 208 (219)
Q Consensus 160 l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 208 (219)
++|+++|+||+++++.+.++...+ ... +.+|+|++|++++.++|.++
T Consensus 153 l~G~~~tiAD~~~~~~~~~~~~~~-~~~-~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 153 LAGDRFTIADIALAPLLWRLALLG-EEL-ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred ccCCCCCHHHHHHHHHHHHhhhcC-ccc-ccChHHHHHHHHHHcCCchh
Confidence 999999999999999999976554 222 78999999999999999954
No 10
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-36 Score=206.44 Aligned_cols=207 Identities=23% Similarity=0.285 Sum_probs=174.6
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCC-CCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHh
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSC-EHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEK 79 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~ 79 (219)
|+.+.+||.+=.|.+++|||++|..+||+|+.+++++.++ ++...+|..+||.++||+|++||.+|+||.||++||++.
T Consensus 2 ~~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 2 SAAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEET 81 (217)
T ss_pred CcccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhc
Confidence 3457899988889999999999999999999999999876 455679999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC--C
Q 036627 80 FKEAGTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSS--A 157 (219)
Q Consensus 80 ~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~ 157 (219)
++++ .|+ |+++..|+.++++...+.+.+++.-...+.... ++.....-..++..-+.+.|..||+.|+. +
T Consensus 82 ~P~p--pLL-P~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l-----~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aG 153 (217)
T KOG0868|consen 82 YPDP--PLL-PKDPHKRAKARAISLLIASGIQPLQNLSVLKML-----NEKEPGYGDQWAQHFITKGFTALEKLLKSHAG 153 (217)
T ss_pred CCCC--CCC-CcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHh-----cccccchhhHHHHHHHHHhHHHHHHHHHHccC
Confidence 9976 799 999999999999999999888886544333222 11222122445556677889999999987 8
Q ss_pred CeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhhccCCC
Q 036627 158 KYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSEGMNFG 217 (219)
Q Consensus 158 ~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 217 (219)
+|.+||++|+||+++.+.++....+. .+ +.-||.+.+..+.+...|.|+.++...++-
T Consensus 154 kycvGDevtiADl~L~pqv~nA~rf~-vd-l~PYPti~ri~e~l~elpaFq~ahP~nQPD 211 (217)
T KOG0868|consen 154 KYCVGDEVTIADLCLPPQVYNANRFH-VD-LTPYPTITRINEELAELPAFQAAHPDNQPD 211 (217)
T ss_pred CcccCceeehhhhccchhhhhhhhcc-cc-CCcCchHHHHHHHHHhCHHHHhcCCCCCCC
Confidence 99999999999999999999996654 22 567999999999999999999999887763
No 11
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=2.3e-35 Score=220.26 Aligned_cols=198 Identities=20% Similarity=0.263 Sum_probs=159.0
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE-eCCeeeechHHHHHHHHHhcccC
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE-DGDLTLFESRAMTAYVAEKFKEA 83 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~i~es~aI~~yL~~~~~~~ 83 (219)
++||++..||+++++|++|+++||+|+.+.++... +.+++..+||.|+||+|+ ++|.+++||.+|++||++.++.+
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~---~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYN---ADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCC---CchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999888654 335677789999999998 78899999999999999998643
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccC
Q 036627 84 GTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGD 163 (219)
Q Consensus 84 ~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 163 (219)
.|+ |.++.+++++++|..+..+.+...... +.... .+ ....++...+...+.+.+.|+.||++|++++ ++|+
T Consensus 78 --~l~-p~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~-~~--~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd 149 (202)
T PRK10357 78 --AML-PRDPLAALRVRQLEALADGIMDAALVS-VREQA-RP--AAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTD 149 (202)
T ss_pred --CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-Cc--cccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCC
Confidence 689 888999999999988776655433322 22111 11 2233445556777889999999999999878 9999
Q ss_pred CccHHHhhhhhHHHHHhhCC-CchhhhcchhHHHHHHHHhcCcchHHHhhc
Q 036627 164 FYSLADLHHLPYTYYFMKTP-CASIISERAHVKAWWEDISSRPAFNKVSEG 213 (219)
Q Consensus 164 ~~t~AD~~~~~~l~~~~~~~-~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 213 (219)
++|+||+++++.+.++.... +..+...+|+|++|++++.+||+|+++...
T Consensus 150 ~~t~ADi~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 150 TVNLATIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred CcCHHHHHHHHHHHHHHhcccCcchhhcChHHHHHHHHHhcChhhhhcCCC
Confidence 99999999999998775432 223356799999999999999999997654
No 12
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-35 Score=214.28 Aligned_cols=197 Identities=23% Similarity=0.310 Sum_probs=167.2
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhC-CCCCCCeEEeCCeeeechHHHHHHHHHhccc
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKN-PFGQIPVLEDGDLTLFESRAMTAYVAEKFKE 82 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~-p~~~vP~L~~~~~~i~es~aI~~yL~~~~~~ 82 (219)
.++||++-.|||++|++++|+++||+|+.+.+++.. +++++++.| +.++||||+++|.+|+||..|++||++.++.
T Consensus 9 ~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~---Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~ 85 (231)
T KOG0406|consen 9 TVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN---KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPS 85 (231)
T ss_pred eEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC---CCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccC
Confidence 499999999999999999999999999999999874 789999999 7999999999999999999999999999995
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc-CCCeec
Q 036627 83 AGTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLS-SAKYLA 161 (219)
Q Consensus 83 ~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~ 161 (219)
+++++ |++|.+++..+.|..+++..+......+.. ....+..+.+.+++...|..||+.|. +++|+.
T Consensus 86 -~~~iL-P~DPy~Ra~arfwa~~id~~~~~~~~~~~~----------~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fg 153 (231)
T KOG0406|consen 86 -GPPIL-PSDPYERAQARFWAEYIDKKVFFVGRFVVA----------AKGGEEQEAAKEELREALKVLEEELGKGKDFFG 153 (231)
T ss_pred -CCCCC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHh----------hcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 34899 999999999999999988766443333321 12335566677788899999999999 689999
Q ss_pred cCCccHHHhhhhhHHHHHhhCC----C--chhhhcchhHHHHHHHHhcCcchHHHhhccC
Q 036627 162 GDFYSLADLHHLPYTYYFMKTP----C--ASIISERAHVKAWWEDISSRPAFNKVSEGMN 215 (219)
Q Consensus 162 G~~~t~AD~~~~~~l~~~~~~~----~--~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 215 (219)
|+.+|+.|+++++.+.+..... + .....++|+|.+|.++|.+++.|++++...+
T Consensus 154 G~~~G~vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e 213 (231)
T KOG0406|consen 154 GETIGFVDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSE 213 (231)
T ss_pred CCCcCHhhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHH
Confidence 9999999999997777766432 1 2225789999999999999999999887543
No 13
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=218.55 Aligned_cols=205 Identities=36% Similarity=0.551 Sum_probs=180.5
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhcccC
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFKEA 83 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~~~ 83 (219)
+++||+++.|+.|+++.+++.++|++|+.+.+++..++++.++|+.+||.|+||+|+++|..++||.||+.||.+.+. .
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~-~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYG-P 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcC-C
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred CCC-CCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcc-cCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeec
Q 036627 84 GTD-LIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAP-IQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLA 161 (219)
Q Consensus 84 ~~~-l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~ 161 (219)
... ++ |++...++.+++|+.+..+.+..... ......+ .++...+....+....++.+.++.+|..|.++.|+.
T Consensus 81 ~~~~l~-p~~~~~ra~v~~~l~~~~~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~ 156 (226)
T KOG0867|consen 81 LGGILL-PKDLKERAIVDQWLEFENGVLDPVTF---ERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLA 156 (226)
T ss_pred CCcccC-CcCHHHHHHHHHHHHhhhcccccccc---cceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCccc
Confidence 334 88 99999999999999999988888743 1222233 335566888899999999999999999999999999
Q ss_pred cCCccHHHhhhhhHHHHHhhC-CCchhhhcchhHHHHHHHHhcCcchHHHhhc
Q 036627 162 GDFYSLADLHHLPYTYYFMKT-PCASIISERAHVKAWWEDISSRPAFNKVSEG 213 (219)
Q Consensus 162 G~~~t~AD~~~~~~l~~~~~~-~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 213 (219)
|+++|+||+.+.+.+..+... ........+|++.+|++++.++|++++....
T Consensus 157 g~~~tlADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~ 209 (226)
T KOG0867|consen 157 GDQLTLADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKRPAYEEANEK 209 (226)
T ss_pred CCcccHHHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhCccHHHHHHH
Confidence 999999999999999998421 1244578899999999999999999987753
No 14
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=1e-33 Score=211.51 Aligned_cols=197 Identities=17% Similarity=0.144 Sum_probs=144.7
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCC-CCcchh--hhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEH-KQPPFL--AKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~-~~~~~~--~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
|+++++||+++.+++++++|++|+++||+|+.+.++....+. ..+++. ..||+|+||+|++||.+|+||.||++||+
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa 80 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLS 80 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 888899999999999999999999999999999774211000 011112 47999999999999999999999999999
Q ss_pred HhcccCCCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 036627 78 EKFKEAGTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSA 157 (219)
Q Consensus 78 ~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 157 (219)
++++. . +.+..+++.+..+.....+.... + ...... .+...+...+.+.+.+..||+.|+++
T Consensus 81 ~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~--------~~~~~~~~~~~~~~~l~~le~~L~~~ 142 (205)
T PTZ00057 81 KKYKI-----C-GESELNEFYADMIFCGVQDIHYK-F---NNTNLF--------KQNETTFLNEELPKWSGYFENILKKN 142 (205)
T ss_pred HHcCC-----C-CCCHHHHHHHHHHHHHHHHHHHH-H---hhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99973 3 54554555554443322221111 1 000000 11223445677889999999999763
Q ss_pred --CeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhhccCC
Q 036627 158 --KYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSEGMNF 216 (219)
Q Consensus 158 --~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 216 (219)
+|++|+++|+||+++++++.++.... ....+.+|+|.+|++++.++|++++++++++.
T Consensus 143 ~~~~l~Gd~~T~AD~~l~~~~~~~~~~~-~~~l~~~P~l~~~~~r~~~~P~~k~y~~~~~~ 202 (205)
T PTZ00057 143 HCNYFVGDNLTYADLAVFNLYDDIETKY-PNSLKNFPLLKAHNEFISNLPNIKNYISNRKE 202 (205)
T ss_pred CCCeeeCCcccHHHHHHHHHHHHHHHhC-hhhhccChhHHHHHHHHHhChHHHHHHHhCCC
Confidence 79999999999999999988876322 23357899999999999999999999998763
No 15
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=6.2e-32 Score=203.39 Aligned_cols=183 Identities=18% Similarity=0.159 Sum_probs=142.6
Q ss_pred CCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhcccC-CCCCCC
Q 036627 11 PVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFKEA-GTDLIR 89 (219)
Q Consensus 11 ~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~~~-~~~l~~ 89 (219)
..||+|+|++++|+++||+|+.+.+++.. ++++|+++||.|+||||+++|.+|+||.+|++||+++++.+ .+.+.
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~---~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~- 92 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKR---KPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLS- 92 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCC---CCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCC-
Confidence 46899999999999999999999999874 56899999999999999999999999999999999999742 13455
Q ss_pred CCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc--------------
Q 036627 90 HHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLS-------------- 155 (219)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-------------- 155 (219)
|+++..++....+. ..+..++ . ..++...+...+++.+.+..||++|.
T Consensus 93 p~~~~~~~~~~~l~--------~~~~~~~-----~-----~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~ 154 (236)
T TIGR00862 93 PKHPESNTAGLDIF--------AKFSAYI-----K-----NSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAED 154 (236)
T ss_pred CCCHHHHHHHHHHH--------HHHHHHH-----H-----cCCHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 66665544321111 1111111 1 11223334455668889999999987
Q ss_pred ----CCCeeccCCccHHHhhhhhHHHHHhhC----CCchhhhcchhHHHHHHHHhcCcchHHHhhccC
Q 036627 156 ----SAKYLAGDFYSLADLHHLPYTYYFMKT----PCASIISERAHVKAWWEDISSRPAFNKVSEGMN 215 (219)
Q Consensus 156 ----~~~~l~G~~~t~AD~~~~~~l~~~~~~----~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 215 (219)
+++|+.|+.+|+|||++++++.++... .+.++.+.+|+|.+|++++.++|+|+++++..+
T Consensus 155 ~~~~~~~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~~~ 222 (236)
T TIGR00862 155 EKVSRRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDDK 222 (236)
T ss_pred ccccCCCcccCCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCChH
Confidence 479999999999999999999999853 245557899999999999999999999987654
No 16
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-31 Score=194.97 Aligned_cols=201 Identities=23% Similarity=0.233 Sum_probs=163.3
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhc
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKF 80 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~ 80 (219)
|+ +++|+|++..+++..+|++++..|++||+.++....+ +++.+...|+|++|+|..||..|.||.||++||++++
T Consensus 1 m~-~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~---w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~ 76 (206)
T KOG1695|consen 1 MP-PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA---WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKF 76 (206)
T ss_pred CC-ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc---hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHh
Confidence 55 7999999999999999999999999999999998752 4555556999999999999999999999999999999
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHH-HHHHHHHHHHHHHHHhhcC--C
Q 036627 81 KEAGTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVID-ANLEKLSKVLDVYEAKLSS--A 157 (219)
Q Consensus 81 ~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~le~~L~~--~ 157 (219)
+ +. ++++.+.++++.+.+...+.....+...... . .....+...+ .......+.+..+++.|+. +
T Consensus 77 g-----l~-Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~----~--~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~s 144 (206)
T KOG1695|consen 77 G-----LA-GKTEEEEAWVDMIVDQFKDFRWEIFRQPYTA----P--EAGKSEEELDKLYLPAKPKYFKILEKILKKNKS 144 (206)
T ss_pred C-----cC-CCCHHHHHHHHHHHHhhhhHHHHHHHHhhhh----h--hhccchhhhhhhhccchHHHHHHHHHHHHhCCC
Confidence 7 66 9999999999999987666444422222111 1 1122222222 5566677889999999984 5
Q ss_pred CeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhhccCCC
Q 036627 158 KYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSEGMNFG 217 (219)
Q Consensus 158 ~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 217 (219)
+|++||++|+||+.++..+..+......+....+|+|+++.+++.++|.+++++++++..
T Consensus 145 gflvGd~lT~aDl~i~e~l~~l~~~~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~r~~t 204 (206)
T KOG1695|consen 145 GFLVGDKLTWADLVIAEHLDTLEELLDPSALDHFPKLKAFKERVSSIPNIKKYLESRPVT 204 (206)
T ss_pred CeeecCcccHHHHHHHHHHHHHHHhcCchhhccChHHHHHHHHHhcCchHHHHHhcCCCC
Confidence 799999999999999999999998432455778899999999999999999999998764
No 17
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=9.8e-32 Score=201.87 Aligned_cols=178 Identities=23% Similarity=0.287 Sum_probs=136.0
Q ss_pred cCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhcccCCCCCCC
Q 036627 10 APVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFKEAGTDLIR 89 (219)
Q Consensus 10 ~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~~~~~~l~~ 89 (219)
+..||+|+|++++|+++|++|+.+.+++.. ++++|.++||.|+||+|+++|.+|+||.+|++||+++++.. .+.
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~---~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~--~l~- 90 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSD---KPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDP--PLK- 90 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCccc---CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCC--CCC-
Confidence 445999999999999999999999999864 56789999999999999999999999999999999999743 233
Q ss_pred CCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc--CCCeeccCCccH
Q 036627 90 HHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLS--SAKYLAGDFYSL 167 (219)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~ 167 (219)
++.+++++...+. ..+..+. . .... .....+.+.+.|+.+|++|+ +++|++|+++|+
T Consensus 91 --~~~~~a~i~~~~~-------~~~~~~~-----~---~~~~----~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ 149 (213)
T PLN02378 91 --TPAEFASVGSNIF-------GTFGTFL-----K---SKDS----NDGSEHALLVELEALENHLKSHDGPFIAGERVSA 149 (213)
T ss_pred --CHHHHHHHHHHHH-------HHHHHHH-----h---cCCh----hhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCch
Confidence 4556665544321 1111111 1 0011 11233566778999999998 478999999999
Q ss_pred HHhhhhhHHHHHhhC----CCchhhhcchhHHHHHHHHhcCcchHHHhhcc
Q 036627 168 ADLHHLPYTYYFMKT----PCASIISERAHVKAWWEDISSRPAFNKVSEGM 214 (219)
Q Consensus 168 AD~~~~~~l~~~~~~----~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 214 (219)
||+++++++.++... ......+.+|+|++|+++|.++|++++++...
T Consensus 150 ADi~l~~~~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~~ 200 (213)
T PLN02378 150 VDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEE 200 (213)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHhcCCCeecccCCh
Confidence 999999998876532 11223578999999999999999999887654
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.98 E-value=2.2e-31 Score=199.95 Aligned_cols=188 Identities=13% Similarity=0.131 Sum_probs=139.0
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeE-EeCCeeeechHHHHHHHHHhcccC
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVL-EDGDLTLFESRAMTAYVAEKFKEA 83 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L-~~~~~~i~es~aI~~yL~~~~~~~ 83 (219)
|+||++..||+|+|++++|+++||+|+.+.++... +. .....||.|+|||| +++|.+|+||.+|++||+++++.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~--~~--~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDD--EA--TPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCc--hh--hHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 68999999999999999999999999998886432 12 22568999999999 488999999999999999999853
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccC---------------CCCCCH---HHHHHHHHHHHH
Q 036627 84 GTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQ---------------GKSPDQ---GVIDANLEKLSK 145 (219)
Q Consensus 84 ~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~---~~~~~~~~~~~~ 145 (219)
++ + ..+++.+.+|++++...+...+...+... ..+.. .....+ .......+++.+
T Consensus 77 ---~l-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (210)
T PRK10387 77 ---LL-T--GKRSPAIEEWLRKVFGYLNKLLYPRFAKA-DLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINA 149 (210)
T ss_pred ---cC-C--CcccHHHHHHHHHHHHHhhcchhcccccC-CCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHH
Confidence 44 3 12567788888877655544332211100 00000 000000 011345678889
Q ss_pred HHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcch
Q 036627 146 VLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAF 207 (219)
Q Consensus 146 ~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 207 (219)
.|+.+|++|++ +|++|+++|+||+++++.+.++...++. ..+|+|.+|++||.+||++
T Consensus 150 ~l~~le~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~~~~---~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 150 DLRALDPLIVK-PNAVNGELSTDDIHLFPILRNLTLVKGI---EWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHHHHHHHhcC-ccccCCCCCHHHHHHHHHHhcceeecCC---CCCHHHHHHHHHHHHHhCC
Confidence 99999999987 9999999999999999999998764432 2369999999999999986
No 19
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.98 E-value=6.2e-31 Score=202.16 Aligned_cols=175 Identities=24% Similarity=0.284 Sum_probs=135.9
Q ss_pred CChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhcccCCCCCCCCC
Q 036627 12 VSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFKEAGTDLIRHH 91 (219)
Q Consensus 12 ~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~~~~~~l~~p~ 91 (219)
.||+|+|++++|+++||+|+.+.+++.. ++++|.++||.|+||+|+++|.+|+||.+|++||+++++.+ .+.
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~---~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~--~L~--- 143 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN---KPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDP--PLA--- 143 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc---CCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCC--CCC---
Confidence 3899999999999999999999998853 67899999999999999988999999999999999999854 344
Q ss_pred ChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC-CCeeccCCccHHHh
Q 036627 92 DLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSS-AKYLAGDFYSLADL 170 (219)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~AD~ 170 (219)
++.+++.+..++.. .+..+ ... . ... +...+.+.+.|+.||++|++ ++|++|+++|+|||
T Consensus 144 ~~~era~i~~~l~~-------~~~~~-----~~~--~-~~~----~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi 204 (265)
T PLN02817 144 TPPEKASVGSKIFS-------TFIGF-----LKS--K-DPG----DGTEQALLDELTSFDDYIKENGPFINGEKISAADL 204 (265)
T ss_pred CHHHHHHHHHHHHH-------HHHHH-----hcc--C-Ccc----hHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHH
Confidence 35667776654321 01111 111 1 111 12235667789999999985 79999999999999
Q ss_pred hhhhHHHHHhhCC----CchhhhcchhHHHHHHHHhcCcchHHHhhc
Q 036627 171 HHLPYTYYFMKTP----CASIISERAHVKAWWEDISSRPAFNKVSEG 213 (219)
Q Consensus 171 ~~~~~l~~~~~~~----~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 213 (219)
++++.+.++.... +....+.+|+|++|++++.++|+|++++..
T Consensus 205 ~l~p~L~~l~~~~~~~~~~~i~~~~P~L~~w~~ri~~rps~~~~~~~ 251 (265)
T PLN02817 205 SLGPKLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRAL 251 (265)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHhcchhHhhcCCC
Confidence 9999998775321 122347899999999999999999998774
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=2.2e-29 Score=188.56 Aligned_cols=187 Identities=15% Similarity=0.157 Sum_probs=132.6
Q ss_pred EEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE-eCCeeeechHHHHHHHHHhcccCC
Q 036627 6 KLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE-DGDLTLFESRAMTAYVAEKFKEAG 84 (219)
Q Consensus 6 ~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~i~es~aI~~yL~~~~~~~~ 84 (219)
+||++..||+|+|+|++|+++|++|+.+.++... + ....++||.|+||+|+ ++|.+++||.+|++||+++++.+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~--~--~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~- 75 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDD--E--ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEP- 75 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCc--c--hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCc-
Confidence 5899999999999999999999999998765432 1 2347889999999998 88999999999999999999743
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHH-------------HHhcc-cCCCCCC---HHHHHHHHHHHHHHH
Q 036627 85 TDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYE-------------YFVAP-IQGKSPD---QGVIDANLEKLSKVL 147 (219)
Q Consensus 85 ~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~~~~~~---~~~~~~~~~~~~~~l 147 (219)
+++|. .++++.+|+.++...+...+...+.. .+... ..+.... ....+...+.+.+.|
T Consensus 76 --~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 150 (209)
T TIGR02182 76 --LLTGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADL 150 (209)
T ss_pred --cCCCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHH
Confidence 44132 34566777766554443222111100 00000 0000000 000134567788899
Q ss_pred HHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCCCchhhhcch-hHHHHHHHHhcCcch
Q 036627 148 DVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTPCASIISERA-HVKAWWEDISSRPAF 207 (219)
Q Consensus 148 ~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p-~l~~~~~~~~~~p~~ 207 (219)
+.+|++|++++|+.| ++|+||+++++++.++...++. .+| +|.+|++||.+++++
T Consensus 151 ~~le~~L~~~~~l~g-~~TiADi~l~~~l~~~~~~~~~----~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 151 EELDKLIDGPNAVNG-ELSEDDILVFPLLRNLTLVAGI----NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHHHHHhCccccCC-CCCHHHHHHHHHhcCeeeecCC----CCChHHHHHHHHHHHHhCC
Confidence 999999999999955 6999999999999987754322 255 999999999999875
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.96 E-value=5.1e-29 Score=182.35 Aligned_cols=209 Identities=25% Similarity=0.299 Sum_probs=156.1
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhcccC
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFKEA 83 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~~~ 83 (219)
.+.||+++.|-.+||||+++.++||+|+...|++..|++..+||.++||.|.||||+++..+|+++.-|++|+++.+-..
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ge 105 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGE 105 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999998644
Q ss_pred CCCCCCCCChHHHHHHHHHHHHH---------h----------hhcCcchHHH---HHHH--------------------
Q 036627 84 GTDLIRHHDLKEAALVKVWIEVE---------S----------QQFHPAIAPI---VYEY-------------------- 121 (219)
Q Consensus 84 ~~~l~~p~~~~~~~~~~~~~~~~---------~----------~~~~~~~~~~---~~~~-------------------- 121 (219)
..|+|..+..+..++.+.-... . +...+....+ +...
T Consensus 106 -r~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 106 -RVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred -ccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 2477222333333333222211 0 0011111100 0000
Q ss_pred ----HhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC----CCeeccCCccHHHhhhhhHHHHHhhCCCc-h--hhhc
Q 036627 122 ----FVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSS----AKYLAGDFYSLADLHHLPYTYYFMKTPCA-S--IISE 190 (219)
Q Consensus 122 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~----~~~l~G~~~t~AD~~~~~~l~~~~~~~~~-~--~~~~ 190 (219)
..........+....++....+...|+..|..|.+ ..|++|+.+|+||+.+.++|+++...+.. . ....
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~gs 264 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDGS 264 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccCC
Confidence 00000011244456677777888899999999987 57999999999999999999999987621 1 2346
Q ss_pred chhHHHHHHHHhcCcchHHHhhc
Q 036627 191 RAHVKAWWEDISSRPAFNKVSEG 213 (219)
Q Consensus 191 ~p~l~~~~~~~~~~p~~~~~~~~ 213 (219)
.|+|..|++++.+|++|+++++.
T Consensus 265 rpnle~Yf~rvrrR~sf~kvlg~ 287 (325)
T KOG4420|consen 265 RPNLESYFERVRRRFSFRKVLGD 287 (325)
T ss_pred CccHHHHHHHHHhhhHHHHhhhh
Confidence 89999999999999999998874
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.93 E-value=3.8e-24 Score=183.16 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=133.2
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE-eCCeeeechHHHHHHHHHh
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE-DGDLTLFESRAMTAYVAEK 79 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~i~es~aI~~yL~~~ 79 (219)
|+ ++||+.+.|+ +.++.++|++.|++|+... .+|.|+||+|+ ++|.+|+||.||++||++.
T Consensus 1 ~~--~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~ 62 (722)
T PLN02907 1 ME--AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARS 62 (722)
T ss_pred Ce--EEEEECCCCC-hHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHh
Confidence 66 8999999774 7789999999999999864 16899999998 6889999999999999999
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCe
Q 036627 80 FKEAGTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKY 159 (219)
Q Consensus 80 ~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 159 (219)
++.. .|+ |.++.+++++++|+.+..... .. ..+...++.||++|++++|
T Consensus 63 ~p~~--~L~-p~d~~erAqV~qWL~~~~~~~---------------------~~-------~~l~~~L~~LE~~L~~rtY 111 (722)
T PLN02907 63 ASLP--GFY-GQDAFESSQVDEWLDYAPTFS---------------------SG-------SEFENACEYVDGYLASRTF 111 (722)
T ss_pred CCCc--CCC-CCCHHHHHHHHHHHHHHhhcc---------------------cH-------HHHHHHHHHHHHHhccCCe
Confidence 9754 689 889999999999998764311 00 1345678999999999999
Q ss_pred eccCCccHHHhhhhhHHHHHh-hCCCchhhhcchhHHHHHHHHhcCcc------hHHHhhc
Q 036627 160 LAGDFYSLADLHHLPYTYYFM-KTPCASIISERAHVKAWWEDISSRPA------FNKVSEG 213 (219)
Q Consensus 160 l~G~~~t~AD~~~~~~l~~~~-~~~~~~~~~~~p~l~~~~~~~~~~p~------~~~~~~~ 213 (219)
|+|+++|+||+++++.+.... ..........+|+|.+|++++.++|+ ++++.+.
T Consensus 112 LvGd~lTLADIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~arPs~~~~~~~~a~~~~ 172 (722)
T PLN02907 112 LVGYSLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYSDILNEVTAAYVGK 172 (722)
T ss_pred ecCCCCCHHHHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhCCCcchhhHHHHHHHh
Confidence 999999999999999986652 11112235789999999999999999 5555543
No 23
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.4e-21 Score=139.60 Aligned_cols=179 Identities=22% Similarity=0.245 Sum_probs=138.6
Q ss_pred CChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhcccCCCCCCCCC
Q 036627 12 VSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFKEAGTDLIRHH 91 (219)
Q Consensus 12 ~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~~~~~~l~~p~ 91 (219)
.||+|||+.+.|..+|++|.++.||+.. ++++|+++.|.|++|+|..|+.+++||..|-++|++.++.+ ++ +.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~---kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p--~~--~~ 92 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSR---KPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPP--KL--PT 92 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCC---CcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCC--CC--cc
Confidence 4899999999999999999999999875 77899999999999999999999999999999999999865 22 22
Q ss_pred --ChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC---CCeeccCCcc
Q 036627 92 --DLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSS---AKYLAGDFYS 166 (219)
Q Consensus 92 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t 166 (219)
.++-......+. ..+..++. ...+..-+...+.+.+.|+.|+++|+. ++|+.||++|
T Consensus 93 ~~~~E~asag~diF--------~kF~~fi~----------ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt 154 (221)
T KOG1422|consen 93 LAPPESASAGSDIF--------AKFSAFIK----------KSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLT 154 (221)
T ss_pred cCCHHHHhhHHHHH--------HHHHHHHh----------CchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeee
Confidence 221111111111 11222210 112223344555677888999999996 7999999999
Q ss_pred HHHhhhhhHHHHHhhCC----CchhhhcchhHHHHHHHHhcCcchHHHhhccC
Q 036627 167 LADLHHLPYTYYFMKTP----CASIISERAHVKAWWEDISSRPAFNKVSEGMN 215 (219)
Q Consensus 167 ~AD~~~~~~l~~~~~~~----~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 215 (219)
.|||.++|-|+.++... ..+..+..+.+++|+..+.++..|..++...+
T Consensus 155 ~aDcsLlPKL~~i~va~k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~tcp~d~ 207 (221)
T KOG1422|consen 155 LADCSLLPKLHHIKVAAKHYKNFEIPASLTGVWRYLKNAYARDEFTNTCPADQ 207 (221)
T ss_pred eehhhhchhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhHHHhhcCCchHH
Confidence 99999999999988443 45567889999999999999999998877654
No 24
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.87 E-value=7.3e-22 Score=122.78 Aligned_cols=73 Identities=29% Similarity=0.445 Sum_probs=69.1
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
++||+++.|++|+|+|++|+++|++|+.+.+++..++++.++|.++||.|+||+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999999988777788899999999999999999999999999999985
No 25
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.85 E-value=6.3e-21 Score=119.34 Aligned_cols=74 Identities=34% Similarity=0.517 Sum_probs=69.7
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAE 78 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~ 78 (219)
++||+++.||+|++++++|+++|++|+.+.+++..+++..+++.+.||.|+||+|+++|.+++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 68999999999999999999999999999999877777789999999999999999999999999999999974
No 26
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.5e-20 Score=127.77 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=134.1
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE-eCCeeeechHHHHHHHHHhcccC
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE-DGDLTLFESRAMTAYVAEKFKEA 83 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~i~es~aI~~yL~~~~~~~ 83 (219)
|+||.+.+||||.|+|++...+|||++...+..++ .+.-.++-...+||+|+ +||..+.||..|.+|+++..+++
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDD----e~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDD----EETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCc----ccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 68999999999999999999999999999998663 23444566788999997 88999999999999999999864
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCH---------------------HHHHHHHHH
Q 036627 84 GTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQ---------------------GVIDANLEK 142 (219)
Q Consensus 84 ~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 142 (219)
++ . .+-+..+..|++.+.+..+... .+++.+..+.+-..+ ........+
T Consensus 77 ---~l-t--~~~~pai~~wlrkv~~y~nkll----~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~ 146 (215)
T COG2999 77 ---LL-T--GKVRPAIEAWLRKVNGYLNKLL----LPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKR 146 (215)
T ss_pred ---hh-c--cCcCHHHHHHHHHhcchHhhhh----hhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHH
Confidence 44 2 2234566677775554444333 333322222111111 123344556
Q ss_pred HHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchH
Q 036627 143 LSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFN 208 (219)
Q Consensus 143 ~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 208 (219)
+...|+.++..+....-+.| .+|+-|+.+|+.|+.+....+..| ..+++.|..+|++...+.
T Consensus 147 i~~dl~~l~~Li~~~s~~n~-~l~~ddi~vFplLRnlt~v~gi~w---ps~v~dy~~~msektqV~ 208 (215)
T COG2999 147 IQADLRALDKLIVGPSAVNG-ELSEDDILVFPLLRNLTLVAGIQW---PSRVADYRDNMSEKTQVN 208 (215)
T ss_pred HHHHHHHHHHHhcCcchhcc-ccchhhhhhhHHhccceecccCCC---cHHHHHHHHHHHHhhCcc
Confidence 66777778877777554444 599999999999999988776655 467999999999876654
No 27
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.84 E-value=1.7e-20 Score=117.90 Aligned_cols=76 Identities=39% Similarity=0.610 Sum_probs=70.6
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhc
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKF 80 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~ 80 (219)
++||+++.|++|++++++|+++|++|+.+.++...+++..+++.++||.|+||+|+++|.+++||.||++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5799999999999999999999999999999987766667789999999999999999999999999999999864
No 28
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.84 E-value=1.8e-20 Score=117.46 Aligned_cols=74 Identities=41% Similarity=0.669 Sum_probs=69.2
Q ss_pred EEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhcccC
Q 036627 7 LYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFKEA 83 (219)
Q Consensus 7 Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~~~ 83 (219)
||+++.||+|+|+|++|+++||+|+.+.++... +.+++...||.|+||+|++||.+++||.+|++||+++++.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE---KRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS---TSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc---chhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 799999999999999999999999999998654 46899999999999999999999999999999999999854
No 29
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.84 E-value=2e-20 Score=117.69 Aligned_cols=75 Identities=69% Similarity=1.139 Sum_probs=70.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHh
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEK 79 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~ 79 (219)
++||+++.||+|+++|++|+++|++|+.+.++...++++.++|.++||.|+||+|+++|.+++||.||++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 789999999999999999999999999999998766667789999999999999999999999999999999863
No 30
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.83 E-value=4.7e-20 Score=117.37 Aligned_cols=77 Identities=39% Similarity=0.624 Sum_probs=70.7
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeC---CeeeechHHHHHHHHHhc
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDG---DLTLFESRAMTAYVAEKF 80 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~---~~~i~es~aI~~yL~~~~ 80 (219)
+++||+++. |+|++++++|+++||+|+.+.+++..+++..++|.++||.|+||+|+++ |.+|+||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 379999985 9999999999999999999999987666778899999999999999976 899999999999999998
Q ss_pred c
Q 036627 81 K 81 (219)
Q Consensus 81 ~ 81 (219)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 31
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.82 E-value=4.7e-20 Score=115.03 Aligned_cols=73 Identities=40% Similarity=0.590 Sum_probs=68.5
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
++||+++.||+|++++++|+++|++|+.+.+++..++++.+++.+.||.|++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987667788899999999999999999999999999999984
No 32
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.82 E-value=4.5e-20 Score=116.16 Aligned_cols=75 Identities=28% Similarity=0.367 Sum_probs=65.7
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEe--CCeeeechHHHHHHHHHhc
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLED--GDLTLFESRAMTAYVAEKF 80 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~i~es~aI~~yL~~~~ 80 (219)
+++||+++.||+|+|++++|.++||+|+.+.++. +++..+++...||.|+||+|++ +|.+++||.+|++||++++
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~--~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPK--GSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCC--ChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 3799999999999999999999999999988753 3334578899999999999985 4689999999999999874
No 33
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.82 E-value=8.3e-20 Score=113.86 Aligned_cols=73 Identities=34% Similarity=0.550 Sum_probs=67.6
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
++||+++.||++++++++|+++|++|+.+.++...++++.+++.++||.|+||+|+++|..|+||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999999876556677899999999999999999999999999999984
No 34
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.81 E-value=1.3e-19 Score=112.98 Aligned_cols=73 Identities=36% Similarity=0.626 Sum_probs=67.4
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhc
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKF 80 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~ 80 (219)
|+||+.+.||+|++++++|+++|++|+.+.++.. ++.+++++.||.|+||+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999998864 356899999999999999999999999999999999864
No 35
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.81 E-value=1.8e-19 Score=112.69 Aligned_cols=73 Identities=36% Similarity=0.455 Sum_probs=66.6
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCC-CCCCeEEeCCeeeechHHHHHHHHHhc
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPF-GQIPVLEDGDLTLFESRAMTAYVAEKF 80 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~i~es~aI~~yL~~~~ 80 (219)
|+||+++.||+|+|+|++|+++|++|+.+.++.. ++.+++.++||. |+||+|+++|.+++||.+|++||++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999988764 356889999995 999999999999999999999999864
No 36
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.81 E-value=2.3e-19 Score=112.81 Aligned_cols=76 Identities=42% Similarity=0.643 Sum_probs=69.6
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhcc
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFK 81 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~ 81 (219)
++||+++. +++++++++|+++|++|+.+.++...++++.+++.+.||.++||+|+++|.+++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 57999885 68999999999999999999999876667889999999999999999999999999999999999874
No 37
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.81 E-value=1.8e-19 Score=113.00 Aligned_cols=73 Identities=41% Similarity=0.570 Sum_probs=63.5
Q ss_pred EEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCC-CCCCeEEeC-CeeeechHHHHHHHHH
Q 036627 6 KLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPF-GQIPVLEDG-DLTLFESRAMTAYVAE 78 (219)
Q Consensus 6 ~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~-~~~i~es~aI~~yL~~ 78 (219)
+|++++..+++.++|++|+++|++|+.+.+++..++++.++|.+.||. |+||+|+++ |.+++||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 344444445999999999999999999999998888888999999999 999999988 9999999999999985
No 38
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.81 E-value=1.5e-19 Score=115.51 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=64.1
Q ss_pred CCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhccc
Q 036627 11 PVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFKE 82 (219)
Q Consensus 11 ~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~~ 82 (219)
..||||+|+|++|+++||+|+.+.+++.. ++++|.++||.|+||+|+++|.+|+||.+|++||+++++.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~---~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~ 88 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKR---KPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCP 88 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCC---CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccC
Confidence 35899999999999999999999999764 6789999999999999999999999999999999999863
No 39
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.81 E-value=2.4e-19 Score=113.02 Aligned_cols=76 Identities=37% Similarity=0.505 Sum_probs=69.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeC-CeeeechHHHHHHHHHhcc
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDG-DLTLFESRAMTAYVAEKFK 81 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~-~~~i~es~aI~~yL~~~~~ 81 (219)
++||+++.| +++++|++|+++|++|+.+.++...++++.+++.++||.|++|+|+++ |.+++||.+|++||++.++
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 579999966 689999999999999999999988777788999999999999999965 8999999999999999874
No 40
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.81 E-value=1.9e-19 Score=112.34 Aligned_cols=73 Identities=34% Similarity=0.507 Sum_probs=68.6
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
|+||++..|++|+++|++|+++||+|+.+.+++..++++.+++.+.||.|++|+|+++|.+++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987767778999999999999999999999999999999985
No 41
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.80 E-value=1.1e-19 Score=113.10 Aligned_cols=73 Identities=27% Similarity=0.337 Sum_probs=65.9
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHh
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEK 79 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~ 79 (219)
+++||+++.|++|+++|++|+++|++|+.+.++... ..+++..+||.|+||+|+++|.+++||.+|++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~---~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEE---WQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHH---hhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 479999999999999999999999999999998632 3457889999999999999999999999999999863
No 42
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.80 E-value=1.7e-19 Score=112.79 Aligned_cols=73 Identities=45% Similarity=0.710 Sum_probs=67.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE-eCCeeeechHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE-DGDLTLFESRAMTAYVA 77 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~i~es~aI~~yL~ 77 (219)
|+||+++.||+|+|+|++|+++|++|+.+.++...+++..+++.+.||.++||+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999999876666678899999999999998 67889999999999985
No 43
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.80 E-value=2.2e-19 Score=112.52 Aligned_cols=72 Identities=31% Similarity=0.535 Sum_probs=66.8
Q ss_pred EEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEe-CCeeeechHHHHHHHHH
Q 036627 6 KLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLED-GDLTLFESRAMTAYVAE 78 (219)
Q Consensus 6 ~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~i~es~aI~~yL~~ 78 (219)
+||+++.||+|++++++|+++|++|+.+.++...+ ++.++|+++||.|++|+|++ +|.+++||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 79999999999999999999999999999998654 67889999999999999995 68999999999999986
No 44
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.78 E-value=4.2e-19 Score=110.40 Aligned_cols=72 Identities=25% Similarity=0.299 Sum_probs=64.5
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAE 78 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~ 78 (219)
++||+++.|++|+++|++|+++|++|+.+.++...+ ..+++...||.|+||+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~--~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW--PELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh--hhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 589999999999999999999999999999986533 234588899999999999999999999999999974
No 45
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.78 E-value=8.2e-18 Score=124.50 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=128.2
Q ss_pred eEEEecC-------CChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 5 IKLYGAP-------VSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 5 ~~Ly~~~-------~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
+.||.++ .||||.++..+|+..+||||.+.-.+. ..+..|++|.++-||+.+.||..|..+|.
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~----------~rSr~G~lPFIELNGe~iaDS~~I~~~L~ 115 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK----------RRSRNGTLPFIELNGEHIADSDLIEDRLR 115 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce----------eeccCCCcceEEeCCeeccccHHHHHHHH
Confidence 5577765 599999999999999999999976542 23788999999999999999999999999
Q ss_pred HhcccCCCCCCCCCChHHHHHHHHHHHHHhhhcCcc----------------------------hHHHHHHHHhcc----
Q 036627 78 EKFKEAGTDLIRHHDLKEAALVKVWIEVESQQFHPA----------------------------IAPIVYEYFVAP---- 125 (219)
Q Consensus 78 ~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~---- 125 (219)
+.++-+ +.+ + +.+++....+....+..+.-. +..+++.+....
T Consensus 116 ~hf~~~--~~L-~--~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~ 190 (281)
T KOG4244|consen 116 KHFKIP--DDL-S--AEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYK 190 (281)
T ss_pred HHcCCC--CCC-C--HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHH
Confidence 998765 325 3 445555555544433222111 111221111100
Q ss_pred -cCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCC-C----chhhhcchhHHHHHH
Q 036627 126 -IQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTP-C----ASIISERAHVKAWWE 199 (219)
Q Consensus 126 -~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~-~----~~~~~~~p~l~~~~~ 199 (219)
..+. ...=..++..+-+.+-|+.+++.|++++||.|+++|-+|+.+++.|..+.. + . .-+.+++|+|.+|++
T Consensus 191 r~~g~-IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~Y-P~~~~i~d~le~d~p~l~eYce 268 (281)
T KOG4244|consen 191 RSTGA-IGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYY-PFRSHISDLLEGDFPNLLEYCE 268 (281)
T ss_pred Hhhcc-ccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheec-cCCCcHHHHHhhhchHHHHHHH
Confidence 0011 111112234455678899999999999999999999999999999999875 3 1 124578999999999
Q ss_pred HHhcC
Q 036627 200 DISSR 204 (219)
Q Consensus 200 ~~~~~ 204 (219)
|+.++
T Consensus 269 RIr~~ 273 (281)
T KOG4244|consen 269 RIRKE 273 (281)
T ss_pred HHHHH
Confidence 99874
No 46
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.78 E-value=1.2e-18 Score=108.01 Aligned_cols=68 Identities=25% Similarity=0.299 Sum_probs=62.8
Q ss_pred EEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEe-CCeeeechHHHHHHH
Q 036627 6 KLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLED-GDLTLFESRAMTAYV 76 (219)
Q Consensus 6 ~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~i~es~aI~~yL 76 (219)
+||+++.||+|+|++++|+++|++|+.+.+++.. +.+++.++||.|+||+|++ ||..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~---~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKN---KPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC---CCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 7999999999999999999999999999998753 4578999999999999986 599999999999997
No 47
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.77 E-value=1.2e-18 Score=108.04 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=60.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeC-CeeeechHHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDG-DLTLFESRAMTAYVAE 78 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~-~~~i~es~aI~~yL~~ 78 (219)
|+||++..||+|+|+|++|+++|++|+.+.++... .....+.||.++||+|+++ |.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~----~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD----EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc----hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999999887432 2344578999999999865 8999999999999974
No 48
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.76 E-value=2.8e-18 Score=110.94 Aligned_cols=73 Identities=27% Similarity=0.467 Sum_probs=65.8
Q ss_pred CCceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeC-CeeeechHHHHHHHH
Q 036627 2 TTLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDG-DLTLFESRAMTAYVA 77 (219)
Q Consensus 2 ~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~-~~~i~es~aI~~yL~ 77 (219)
..+++||+.+.||+|++++++|+++|++|+.+.++... ..+++.+.||.++||+|+++ |.+++||.+|++||+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~---~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD---KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC---CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 45699999999999999999999999999999998753 34678999999999999965 899999999999985
No 49
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.76 E-value=2.8e-18 Score=109.09 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=63.9
Q ss_pred EEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCC-Ccchhh-----hCCCCCCCeEEeCCeeeechHHHHHHHHHh
Q 036627 6 KLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHK-QPPFLA-----KNPFGQIPVLEDGDLTLFESRAMTAYVAEK 79 (219)
Q Consensus 6 ~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~-~~~~~~-----~~p~~~vP~L~~~~~~i~es~aI~~yL~~~ 79 (219)
+||++..++.|+++|++|+++||+|+.+.+++..+++. .+++.. .+|+|+||+|++||.+++||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 78999999999999999999999999999998765432 234432 239999999999999999999999999876
Q ss_pred c
Q 036627 80 F 80 (219)
Q Consensus 80 ~ 80 (219)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 50
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.76 E-value=3.4e-18 Score=105.41 Aligned_cols=68 Identities=38% Similarity=0.539 Sum_probs=58.3
Q ss_pred CChhHHHHHHHHHHcCCccEEEEecC-CCCCCCCcchhhhCCCCCCCeEEe-CCeeeechHHHHHHHHHh
Q 036627 12 VSTCTARVMTCLHEKAVDFALVPVDL-FSCEHKQPPFLAKNPFGQIPVLED-GDLTLFESRAMTAYVAEK 79 (219)
Q Consensus 12 ~s~~~~~~~~~l~~~gi~~~~~~~~~-~~~~~~~~~~~~~~p~~~vP~L~~-~~~~i~es~aI~~yL~~~ 79 (219)
.|||++|++++|+++|++|+...+.. ..+.++.++|.++||.|+||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 48999999999999999999988843 344556689999999999999995 889999999999999975
No 51
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.76 E-value=2.9e-18 Score=106.87 Aligned_cols=70 Identities=36% Similarity=0.567 Sum_probs=63.7
Q ss_pred eEEEecCCChhHHHHHHHHHH--cCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE-eCCeeeechHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHE--KAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE-DGDLTLFESRAMTAYVA 77 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~--~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~i~es~aI~~yL~ 77 (219)
++||+++.||+|+|+|++|++ +|++|+.+.++.. ++.+++.+.||.++||+|+ ++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW---SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc---cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999853 3568899999999999998 68899999999999985
No 52
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.75 E-value=9.2e-18 Score=106.00 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=62.2
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhh-----hCCCCCCCeEEeCCeeeechHHHHHHHHH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLA-----KNPFGQIPVLEDGDLTLFESRAMTAYVAE 78 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~-----~~p~~~vP~L~~~~~~i~es~aI~~yL~~ 78 (219)
+++||+++.|+++++++++|+++|++|+.+.++... ++.. .+|.|+||+|++||.+++||.||++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~------~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAE------DLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHH------HHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHH
Confidence 368999999999999999999999999999987532 2222 24699999999999999999999999999
Q ss_pred hcc
Q 036627 79 KFK 81 (219)
Q Consensus 79 ~~~ 81 (219)
+++
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 886
No 53
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.74 E-value=8.4e-18 Score=107.65 Aligned_cols=70 Identities=21% Similarity=0.345 Sum_probs=61.1
Q ss_pred CCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeC-CeeeechHHHHHHHHHhcc
Q 036627 11 PVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDG-DLTLFESRAMTAYVAEKFK 81 (219)
Q Consensus 11 ~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~-~~~i~es~aI~~yL~~~~~ 81 (219)
+.||+|+|+|++|+++||+|+.+.++...+++..+++ +.||.|+||+|+++ |.+++||.+|++||+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 5799999999999999999999999876544444455 78999999999988 8999999999999999864
No 54
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.74 E-value=4.3e-17 Score=111.18 Aligned_cols=117 Identities=56% Similarity=0.979 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhh
Q 036627 95 EAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLP 174 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~ 174 (219)
+++++.+|+.+....+.+.+..........+..+...++...+.....+.+.++.||+.|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 57889999999888888876655443333332234556777777888999999999999999999999999999999999
Q ss_pred HHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHh
Q 036627 175 YTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVS 211 (219)
Q Consensus 175 ~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 211 (219)
.+.++...+.....+.+|+|++|++++.++|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLMATPFAKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHccchhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 9988764332234568999999999999999998864
No 55
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.73 E-value=2.1e-17 Score=103.47 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=60.7
Q ss_pred eEEEecC-------CChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 5 IKLYGAP-------VSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 5 ~~Ly~~~-------~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
++||.++ .||+|+|++++|+++|++|+.+.++.. +.||.|+||+|+++|.+++||.+|++||+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA----------KRSPKGKLPFIELNGEKIADSELIIDHLE 71 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc----------cCCCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 6899988 689999999999999999999887632 56999999999999999999999999999
Q ss_pred Hhcc
Q 036627 78 EKFK 81 (219)
Q Consensus 78 ~~~~ 81 (219)
++++
T Consensus 72 ~~~~ 75 (75)
T cd03080 72 EKYG 75 (75)
T ss_pred HHcC
Confidence 9874
No 56
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.73 E-value=1.9e-17 Score=104.26 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=62.2
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeC----CeeeechHHHHHHHHHh
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDG----DLTLFESRAMTAYVAEK 79 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~----~~~i~es~aI~~yL~~~ 79 (219)
+++||+++.||+|++++++|+++||+|+.+.++... .++ ...||.++||+|+++ |.+++||.+|++||++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~----~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~ 75 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS----RKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTY 75 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh----HHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHH
Confidence 489999999999999999999999999999886532 123 356999999999854 78999999999999987
Q ss_pred c
Q 036627 80 F 80 (219)
Q Consensus 80 ~ 80 (219)
.
T Consensus 76 ~ 76 (77)
T cd03040 76 L 76 (77)
T ss_pred c
Confidence 5
No 57
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.71 E-value=5.2e-17 Score=101.01 Aligned_cols=68 Identities=26% Similarity=0.466 Sum_probs=61.6
Q ss_pred ecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 9 GAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 9 ~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
+...|++|+|++++|+++|++|+.+.+++..+ ++.++|.++||.|++|+|+++|.+++||.+|++||.
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 45679999999999999999999999997654 356899999999999999999999999999999984
No 58
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=119.14 Aligned_cols=195 Identities=15% Similarity=0.216 Sum_probs=122.1
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhcccC
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFKEA 83 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~~~ 83 (219)
.++||.+..||||-+||.+|.+.||+|+++.|++-.. .+. +.+...+||+|+.+|+.+.||..|+.-|..-...+
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r----~eI-k~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~ 164 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLR----QEI-KWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDK 164 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhh----hhc-cccccccccEEEeccceechhHHHHHHHHHHhccC
Confidence 4899999999999999999999999999999986531 221 23578899999988888999999998874322110
Q ss_pred CC------CCCC----------------------------CCChHHHHHHHHHHHHHhhhcCcchHHHHHHHH-------
Q 036627 84 GT------DLIR----------------------------HHDLKEAALVKVWIEVESQQFHPAIAPIVYEYF------- 122 (219)
Q Consensus 84 ~~------~l~~----------------------------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 122 (219)
+. +++| ..+.+.+..-..|-.|.++-+...+.+-++.+.
T Consensus 165 ~q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletF 244 (370)
T KOG3029|consen 165 RQDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETF 244 (370)
T ss_pred CCCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHH
Confidence 00 0110 001111222333333333333222221111100
Q ss_pred --hc--cc----C-----------CC---------CCCHHHHHHHHHHHHHHHHHHHHhhc-CCCeeccCCccHHHhhhh
Q 036627 123 --VA--PI----Q-----------GK---------SPDQGVIDANLEKLSKVLDVYEAKLS-SAKYLAGDFYSLADLHHL 173 (219)
Q Consensus 123 --~~--~~----~-----------~~---------~~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~~~t~AD~~~~ 173 (219)
+. .. + |. -.....+...++.+.+..+.+-..|+ +++|+.|++|++||++++
T Consensus 245 ewf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvf 324 (370)
T KOG3029|consen 245 EWFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVF 324 (370)
T ss_pred HHHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhh
Confidence 00 00 0 00 00111222344455566666666674 489999999999999999
Q ss_pred hHHHHHhhCCCchhhhcchhHHHHHHHHhc
Q 036627 174 PYTYYFMKTPCASIISERAHVKAWWEDISS 203 (219)
Q Consensus 174 ~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~ 203 (219)
++|+-+..+..+.-.-...++..|+-+|++
T Consensus 325 Gvl~sm~gc~afkd~~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 325 GVLRSMEGCQAFKDCLQNTSIGEWYYRMEA 354 (370)
T ss_pred hhhhHhhhhhHHHHHHhcchHHHHHHHHHH
Confidence 999999987644445567899999999986
No 59
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.70 E-value=2.8e-16 Score=107.97 Aligned_cols=120 Identities=23% Similarity=0.374 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhH
Q 036627 96 AALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPY 175 (219)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~ 175 (219)
++++++|+.+....+.+.+...+.... . ..+.++...+...+++.+.|+.+|+.|+.++|++|+++|+||+++++.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~ 77 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLL-G---IAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGA 77 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHc-C---ccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHH
Confidence 678999999998888887765544322 1 123455677788889999999999999999999999999999999999
Q ss_pred HHHHhhCC-CchhhhcchhHHHHHHHHhcCcchHHHhhccCCCCC
Q 036627 176 TYYFMKTP-CASIISERAHVKAWWEDISSRPAFNKVSEGMNFGEK 219 (219)
Q Consensus 176 l~~~~~~~-~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~ 219 (219)
+.+..... +..+...+|++.+|++++.++|+|++++.+.+.+||
T Consensus 78 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~ 122 (123)
T cd03181 78 LLLGFTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFGEVKLCEK 122 (123)
T ss_pred HHHHHHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcCCCCcCCC
Confidence 98875432 233357899999999999999999999999988886
No 60
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.69 E-value=3e-16 Score=106.21 Aligned_cols=112 Identities=23% Similarity=0.338 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhh
Q 036627 95 EAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLP 174 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~ 174 (219)
+++++.+|+.+....+.+.+...+......+ ..++...+....++.+.|+.+|+.|++++|++|+++|+|||++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 76 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAP----EKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFP 76 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCC----CCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHH
Confidence 3688999999999999987765433322222 344556777888899999999999998999999999999999999
Q ss_pred HHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHh
Q 036627 175 YTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVS 211 (219)
Q Consensus 175 ~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 211 (219)
.+.+..... ......+|+|.+|++++.++|++++++
T Consensus 77 ~~~~~~~~~-~~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 77 WVRRLEWIG-IDDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHHHHhcc-ccchhhchHHHHHHHHHhhCHHHHHhc
Confidence 999987654 224678999999999999999999875
No 61
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.68 E-value=3.2e-16 Score=106.16 Aligned_cols=113 Identities=25% Similarity=0.377 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhh
Q 036627 95 EAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLP 174 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~ 174 (219)
+++++++|+.+..+.+.+.+..........+ ....++...+.....+.+.++.+|+.|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~ 79 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWAT--DEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFV 79 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhccccccccc--ChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHH
Confidence 4789999999998888887654432211100 11223455667788899999999999998899999999999999999
Q ss_pred HHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHh
Q 036627 175 YTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVS 211 (219)
Q Consensus 175 ~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 211 (219)
.+.++...+ .. ..++|+|.+|++++.++|+|++++
T Consensus 80 ~~~~~~~~~-~~-~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 80 VLRWAPGVG-LD-LSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHHhhcC-CC-hhhChHHHHHHHHHHhCHHhHhhC
Confidence 998876543 22 467999999999999999999864
No 62
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.2e-15 Score=113.62 Aligned_cols=197 Identities=18% Similarity=0.187 Sum_probs=146.8
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCc--cEEEEecC--C-CCCCCCcc------------------hhhh----CCCCCC
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVD--FALVPVDL--F-SCEHKQPP------------------FLAK----NPFGQI 56 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~--~~~~~~~~--~-~~~~~~~~------------------~~~~----~p~~~v 56 (219)
.+.||..-.||+++|..+.-+.+|++ ..+..+.+ . .|....++ |..- +..-+|
T Consensus 51 RYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTV 130 (324)
T COG0435 51 RYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTV 130 (324)
T ss_pred eEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeE
Confidence 47899999999999999999999984 22222222 1 11101111 1111 335679
Q ss_pred CeEEeC---CeeeechHHHHHHHHHhccc---CCCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCC
Q 036627 57 PVLEDG---DLTLFESRAMTAYVAEKFKE---AGTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKS 130 (219)
Q Consensus 57 P~L~~~---~~~i~es~aI~~yL~~~~~~---~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (219)
|||-|. ..+=.||..|++.+...+.+ ...+++ | ...+.+++.+..++.+.++..+... |..
T Consensus 131 PVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dly-P--~~Lr~eId~~n~~Iy~~vNNGVYk~----------GFA 197 (324)
T COG0435 131 PVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLY-P--EALRTEIDELNKWIYDTVNNGVYKA----------GFA 197 (324)
T ss_pred EEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccC-C--HHHHHHHHHHHhhhcccccCceeee----------ccc
Confidence 999643 35568999999999877653 234688 6 4468899999998888777765332 556
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCCC------chhhhcchhHHHHHHHHhcC
Q 036627 131 PDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTPC------ASIISERAHVKAWWEDISSR 204 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~------~~~~~~~p~l~~~~~~~~~~ 204 (219)
..+++-+++.+.+-..|+.||+.|+++.|++|+++|-||+-+++.|-++..... ..-..+||+|..|+..+.+.
T Consensus 198 ~tq~aYeea~~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~ 277 (324)
T COG0435 198 TTQEAYEEAVKKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQL 277 (324)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcC
Confidence 678888888889999999999999999999999999999999999999875431 11245699999999999999
Q ss_pred cchHHHhhc
Q 036627 205 PAFNKVSEG 213 (219)
Q Consensus 205 p~~~~~~~~ 213 (219)
|+|.++..-
T Consensus 278 pg~~~T~df 286 (324)
T COG0435 278 PGFAETVDF 286 (324)
T ss_pred cccccccch
Confidence 999987653
No 63
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.67 E-value=8.6e-16 Score=102.94 Aligned_cols=105 Identities=15% Similarity=0.214 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhh
Q 036627 94 KEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHL 173 (219)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~ 173 (219)
.++++++.|+.++...+.+.+..+.. + .++..+...+.+.+.|..||+.|++++|++|+++|+|||+++
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~ 70 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEK-----G------RKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALA 70 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-----C------cHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHH
Confidence 47899999999998887776644431 1 134456678889999999999999999999999999999999
Q ss_pred hHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHH
Q 036627 174 PYTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKV 210 (219)
Q Consensus 174 ~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 210 (219)
+.+.++...+ ......+|+|++|++++.+||+++++
T Consensus 71 ~~~~~~~~~~-~~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 71 PLLWRLPALG-IELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHHHHHHHcC-CCCcccchHHHHHHHHHHCCHHHHHh
Confidence 9987665333 23335799999999999999999875
No 64
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.67 E-value=4.9e-16 Score=105.35 Aligned_cols=113 Identities=20% Similarity=0.256 Sum_probs=88.7
Q ss_pred CChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHh
Q 036627 91 HDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADL 170 (219)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~ 170 (219)
.++..++++++|+.+....+.+.+....+.... ..+..+...+++.+.++.||+.|++++|++|+++|+||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi 73 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRY--------PEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADW 73 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhc--------CcccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHH
Confidence 368899999999999888887766554433211 112366778889999999999999999999999999999
Q ss_pred hhhhHHHHHhhCCC-chhhhcchhHHHHHHHHhcCcchHHHh
Q 036627 171 HHLPYTYYFMKTPC-ASIISERAHVKAWWEDISSRPAFNKVS 211 (219)
Q Consensus 171 ~~~~~l~~~~~~~~-~~~~~~~p~l~~~~~~~~~~p~~~~~~ 211 (219)
++++.+.++..... ......+|+|.+|++++.++|+|++++
T Consensus 74 ~l~~~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 74 AIFPFVRQFAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred HHHHHHHHHHHhhhcccCcccCHHHHHHHHHHHcChHHHhhC
Confidence 99998877653321 112478999999999999999999863
No 65
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.66 E-value=4.5e-16 Score=95.89 Aligned_cols=71 Identities=52% Similarity=0.732 Sum_probs=63.0
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
++||+++.||+|++++++|+++||+|+.+.++..... ..++.+.+|.+++|+|+++|.+++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGE--QEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCC--CHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5799999999999999999999999999999865432 1257889999999999999999999999999984
No 66
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.66 E-value=1.4e-15 Score=103.60 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhccc--CCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHH
Q 036627 92 DLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPI--QGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLAD 169 (219)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD 169 (219)
++.+++++++|+.++...+.+.+...+........ .....++...+...+++.+.|+.||+.|++++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 36689999999999888877766554433211110 0124557778888999999999999999998999999999999
Q ss_pred hhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcch
Q 036627 170 LHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAF 207 (219)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 207 (219)
|++++.+.++...+ .++...+|+|.+|++++.++|++
T Consensus 81 i~l~~~~~~~~~~~-~~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKVVK-LRVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHhcC-CCCccccHHHHHHHHHHHhccCC
Confidence 99999999887644 33456899999999999999974
No 67
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.66 E-value=2.4e-15 Score=101.19 Aligned_cols=109 Identities=26% Similarity=0.511 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhh
Q 036627 95 EAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLP 174 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~ 174 (219)
+++++.+|+.+..+.+.+.+..++......+ ....++...+...+++.+.|+.+|+.|++++|++|+++|+||+++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~ 79 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTP--PEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGC 79 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCC--cccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHH
Confidence 4788999999999999888766544432221 22345566777888999999999999999999999999999999999
Q ss_pred HHHHHhhCCCchhhhcchhHHHHHHHHhcCcch
Q 036627 175 YTYYFMKTPCASIISERAHVKAWWEDISSRPAF 207 (219)
Q Consensus 175 ~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 207 (219)
++....... ....++|+|++|++++.++|+|
T Consensus 80 ~~~~~~~~~--~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 80 SAYRWFELP--IERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHHcc--cccccCchHHHHHHHHHhCCCC
Confidence 986544332 2357899999999999999975
No 68
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.66 E-value=1.9e-15 Score=103.14 Aligned_cols=115 Identities=20% Similarity=0.238 Sum_probs=87.5
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccC----CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCC
Q 036627 89 RHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQ----GKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDF 164 (219)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 164 (219)
||.++.+++++++|+.+....+.+.+..........+.. +...++...+....++.+.|+.||+.|++++|++|++
T Consensus 1 ~~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~ 80 (119)
T cd03189 1 PPPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDK 80 (119)
T ss_pred CCCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCC
Confidence 477899999999999999888887755332221111100 0012344555667789999999999999999999999
Q ss_pred ccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCc
Q 036627 165 YSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRP 205 (219)
Q Consensus 165 ~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 205 (219)
+|+|||++++.+.++.... . ....+|+|.+|+++++++|
T Consensus 81 ~t~ADi~l~~~~~~~~~~~-~-~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 81 LTAADIMMSFPLEAALARG-P-LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CCHHHHHHHHHHHHHHHcC-c-ccccCchHHHHHHHHhcCC
Confidence 9999999999998886544 2 3678999999999999987
No 69
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.65 E-value=2.5e-15 Score=102.89 Aligned_cols=117 Identities=20% Similarity=0.210 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc--CCCeeccCCccHHHhh
Q 036627 94 KEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLS--SAKYLAGDFYSLADLH 171 (219)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~AD~~ 171 (219)
.+++++++|+.++.+.+.+.+........... .+ ...+...+...+.+.+.|+.+|+.|+ +++|++|+++|+|||+
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~ 79 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEE-LG-LDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADIC 79 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHH
Confidence 47899999999999889876443333221110 01 01233344455678899999999998 4579999999999999
Q ss_pred hhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhhcc
Q 036627 172 HLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSEGM 214 (219)
Q Consensus 172 ~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 214 (219)
+++.+.+....+ .. ...+|+|.+|++++.++|+|+++++.+
T Consensus 80 ~~~~~~~~~~~~-~~-~~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 80 LVPQVYNARRFG-VD-LSPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHHHHHHhC-CC-cccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 999998776543 22 478999999999999999999987754
No 70
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.65 E-value=1.9e-15 Score=104.32 Aligned_cols=117 Identities=21% Similarity=0.326 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhhhcCcchHHHHHHHHhcccC-CCCCCHHHHHHHHHHHHHHHHHHHHh-hcCCCeeccCCccHHHhhhh
Q 036627 96 AALVKVWIEVESQQFHPAIAPIVYEYFVAPIQ-GKSPDQGVIDANLEKLSKVLDVYEAK-LSSAKYLAGDFYSLADLHHL 173 (219)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~le~~-L~~~~~l~G~~~t~AD~~~~ 173 (219)
++++.+|+.+....+...+...+......+.+ +...++...+...+.+.+.++.+|+. +++++|++|+++|+|||+++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 46788888888877776655443333222221 23456677788888999999999997 45578999999999999999
Q ss_pred hHHHHHhhCCCchhhhcchhHHHHHHHHhc--CcchHHHhhc
Q 036627 174 PYTYYFMKTPCASIISERAHVKAWWEDISS--RPAFNKVSEG 213 (219)
Q Consensus 174 ~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~--~p~~~~~~~~ 213 (219)
+.+.+....+ .+..+++|+|.+|++++.+ ||+|+++++.
T Consensus 82 ~~~~~~~~~~-~~~~~~~p~l~~w~~~~~~~~~p~~~~~~~~ 122 (126)
T cd03183 82 CEIMQPEAAG-YDVFEGRPKLAAWRKRVKEAGNPLFDEAHKI 122 (126)
T ss_pred HHHHHHHhcC-CcccccCchHHHHHHHHHHhcchhHHHHHHH
Confidence 9988876544 3345789999999999999 9999987753
No 71
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.64 E-value=2.8e-15 Score=105.44 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhh
Q 036627 94 KEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHL 173 (219)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~ 173 (219)
..++++++|+++..+.+.+.+.... ...+++..+.....+.+.|+.||+.|++++|++|+++|+||++++
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~ 72 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAG----------FATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLF 72 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHh----------hccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHH
Confidence 4578899999999887766543211 123456677788899999999999999999999999999999999
Q ss_pred hHHHHHhhCC------CchhhhcchhHHHHHHHHhcCcchHHHhhc
Q 036627 174 PYTYYFMKTP------CASIISERAHVKAWWEDISSRPAFNKVSEG 213 (219)
Q Consensus 174 ~~l~~~~~~~------~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 213 (219)
+.+.++.... +......+|+|.+|+++|.++|++++++..
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~ 118 (142)
T cd03190 73 TTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNF 118 (142)
T ss_pred HHHHHHHHHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcCH
Confidence 9988764311 112246899999999999999999998765
No 72
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.63 E-value=2.1e-15 Score=93.62 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=57.6
Q ss_pred eEEEecC-------CChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 5 IKLYGAP-------VSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 5 ~~Ly~~~-------~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
+.||.++ .||+|++++++|+++||+|+.+.++.. .+||.|+||+|+++|..+.||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~----------~~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP----------WRSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc----------ccCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 3577766 899999999999999999999988743 16899999999999999999999999998
Q ss_pred Hh
Q 036627 78 EK 79 (219)
Q Consensus 78 ~~ 79 (219)
++
T Consensus 71 ~~ 72 (72)
T cd03054 71 KK 72 (72)
T ss_pred hC
Confidence 74
No 73
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.62 E-value=5.1e-15 Score=101.40 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhh
Q 036627 95 EAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLP 174 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~ 174 (219)
++++++++++.+.+.... +..++. . +..+...+.....+.+.+..||+.|++++|++|+++|+||+++++
T Consensus 2 e~~~id~~~~~~~d~~~~-~~~~~~----~-----~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~ 71 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMG-LARICY----S-----PDFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYE 71 (121)
T ss_pred chHHHHHHHHHHHHHHHH-HHHhhc----C-----cchHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHH
Confidence 467788887766553322 222211 1 122345566777889999999999999999999999999999999
Q ss_pred HHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhhccCC
Q 036627 175 YTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSEGMNF 216 (219)
Q Consensus 175 ~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 216 (219)
++.++.... ......+|+|.+|++++.++|++++++++++.
T Consensus 72 ~~~~~~~~~-~~~~~~~P~l~~~~~rv~~~p~vk~~~~~~~~ 112 (121)
T cd03209 72 ALDQHRIFE-PDCLDAFPNLKDFLERFEALPKISAYMKSDRF 112 (121)
T ss_pred HHHHHHHhC-ccccccChHHHHHHHHHHHCHHHHHHHhcccC
Confidence 999987643 23357899999999999999999999998865
No 74
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.62 E-value=3.9e-15 Score=102.65 Aligned_cols=110 Identities=17% Similarity=0.233 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhh
Q 036627 94 KEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHL 173 (219)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~ 173 (219)
.+++++++|+.++...+.+.+..++. . .+...+.....+.+.++.||+.|++++|++|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~ 70 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLA-----A------KGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALG 70 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHc-----c------chHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHH
Confidence 46899999999988877766544321 1 134556678889999999999999999999999999999999
Q ss_pred hHHHHHhhC---CCch--hhhcchhHHHHHHHHhcCcchHHHhhcc
Q 036627 174 PYTYYFMKT---PCAS--IISERAHVKAWWEDISSRPAFNKVSEGM 214 (219)
Q Consensus 174 ~~l~~~~~~---~~~~--~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 214 (219)
+.+.++... .+.+ ....+|+|.+|++++.++|++++++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 116 (126)
T cd03185 71 SFLGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDR 116 (126)
T ss_pred HHHHHHHHHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCCCH
Confidence 999887532 1222 2467999999999999999999988764
No 75
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.61 E-value=6.7e-15 Score=100.35 Aligned_cols=110 Identities=22% Similarity=0.371 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhh
Q 036627 95 EAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLP 174 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~ 174 (219)
+++++.+|+.+....+.+.+...+....... . ...+...+++.+.|+.||+.|++++|++|+++|+||+++++
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~ 74 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGG----A---EPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVA 74 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcC----C---CCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHH
Confidence 4788999999887777766655544432211 1 23445677889999999999998899999999999999999
Q ss_pred HHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhh
Q 036627 175 YTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSE 212 (219)
Q Consensus 175 ~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 212 (219)
++.++....+.. ...+|+|.+|+++|.++|++++...
T Consensus 75 ~~~~~~~~~~~~-~~~~p~l~~w~~~~~~~p~~~~~~~ 111 (118)
T cd03177 75 TVSTLEALLPLD-LSKYPNVRAWLERLKALPPYEEANG 111 (118)
T ss_pred HHHHHHHhcCCC-hhhCchHHHHHHHHHcccchHHHHH
Confidence 999887522222 4679999999999999999998663
No 76
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.58 E-value=1.1e-14 Score=101.68 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHH-HHHHHHHHHHHHHHHHHhhc--CCCeeccCCccHHHhh
Q 036627 95 EAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGV-IDANLEKLSKVLDVYEAKLS--SAKYLAGDFYSLADLH 171 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~AD~~ 171 (219)
+.++++++++.+.+.....+... . . ......+. .......+.+.|+.||+.|+ +++|++|+++|+||++
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~-~---~----~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~ 74 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLP-F---L----PPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIH 74 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-c---C----ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHH
Confidence 56788888877665443332111 1 0 11111112 22333356789999999998 6789999999999999
Q ss_pred hhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhhccCC
Q 036627 172 HLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSEGMNF 216 (219)
Q Consensus 172 ~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 216 (219)
+++.+.++.... ......+|+|.+|++++.++|++++++++...
T Consensus 75 l~~~l~~~~~~~-~~~l~~~P~l~~~~~rv~~~P~vk~~~~~~~~ 118 (137)
T cd03208 75 LLEAILMVEELD-PSLLSDFPLLQAFKTRISNLPTIKKFLQPGSP 118 (137)
T ss_pred HHHHHHHHHHhc-hhhhccChHHHHHHHHHHcCHHHHHHHhcCCC
Confidence 999999887543 23467899999999999999999999987653
No 77
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.56 E-value=4.8e-14 Score=97.19 Aligned_cols=110 Identities=22% Similarity=0.277 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC---CCeeccCCccHHHhh
Q 036627 95 EAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSS---AKYLAGDFYSLADLH 171 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~AD~~ 171 (219)
+.++++.++..+.+.. ..+..++. ...+.......+.+.+.|..||+.|++ ++|++|+++|+||++
T Consensus 3 e~~~vd~~~~~~~d~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~ 71 (126)
T cd03210 3 EAALIDMVNDGVEDLR-LKYVRMIY----------QNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYN 71 (126)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHH
Confidence 5677777776654432 22211111 011334456667788999999999974 589999999999999
Q ss_pred hhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhhccCC
Q 036627 172 HLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSEGMNF 216 (219)
Q Consensus 172 ~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 216 (219)
+++.+.++.... ......+|+|.+|+++|.++|+|++++..++.
T Consensus 72 l~~~~~~~~~~~-~~~~~~~P~l~~~~~rv~~~p~v~~~~~~~~~ 115 (126)
T cd03210 72 LFDLLDIHLVLA-PGCLDAFPLLKAFVERLSARPKLKAYLESDAF 115 (126)
T ss_pred HHHHHHHHHHhC-hHhhhcChHHHHHHHHHHhCcHHHHHHhCcCC
Confidence 999998887543 23467899999999999999999999987764
No 78
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.3e-14 Score=105.04 Aligned_cols=196 Identities=17% Similarity=0.168 Sum_probs=139.6
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCc----cEEEEe-cCCCCCCCCc-------------c-------------hhhh--
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVD----FALVPV-DLFSCEHKQP-------------P-------------FLAK-- 50 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~----~~~~~~-~~~~~~~~~~-------------~-------------~~~~-- 50 (219)
.+.||..-.|||++|..++++.+|+. +..+.. .-..|....+ + |..-
T Consensus 37 ryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p 116 (319)
T KOG2903|consen 37 RYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASP 116 (319)
T ss_pred eEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCC
Confidence 47799888999999999999999984 333222 1011100000 0 0001
Q ss_pred --CCCCCCCeEEe---CCeeeechHHHHHHHHHhcc---c----CCCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHH
Q 036627 51 --NPFGQIPVLED---GDLTLFESRAMTAYVAEKFK---E----AGTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIV 118 (219)
Q Consensus 51 --~p~~~vP~L~~---~~~~i~es~aI~~yL~~~~~---~----~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (219)
+..-+||||=| ...+=.||..|++.+...+. . +.-+|+ | +..++.++.+..|+.+.+...+...
T Consensus 117 ~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~-P--~~L~~~Ide~N~wvy~~INNGVYk~- 192 (319)
T KOG2903|consen 117 NYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLY-P--SSLRAQIDETNSWVYDKINNGVYKC- 192 (319)
T ss_pred CCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccC-C--HHHHHHHhhhhceecccccCceeee-
Confidence 22446999954 45667899999999993332 1 122577 5 4578899999998888777655332
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC--eeccCCccHHHhhhhhHHHHHhhCC-------Cchhhh
Q 036627 119 YEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAK--YLAGDFYSLADLHHLPYTYYFMKTP-------CASIIS 189 (219)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~AD~~~~~~l~~~~~~~-------~~~~~~ 189 (219)
|....++.-+....++-+.|+.+|+.|+++. |++|+.+|.||+.+++.+-++.... ...+..
T Consensus 193 ---------GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~ 263 (319)
T KOG2903|consen 193 ---------GFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRD 263 (319)
T ss_pred ---------ccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhc
Confidence 4456677777778888889999999999965 9999999999999999998876443 122356
Q ss_pred cchhHHHHHHHHhc-CcchHHHhh
Q 036627 190 ERAHVKAWWEDISS-RPAFNKVSE 212 (219)
Q Consensus 190 ~~p~l~~~~~~~~~-~p~~~~~~~ 212 (219)
+||+|..|..++.+ .|+++.+..
T Consensus 264 ~Yp~l~~~lk~iY~~~~~~~~Ttd 287 (319)
T KOG2903|consen 264 EYPNLHNWLKNIYWNIPGFSSTTD 287 (319)
T ss_pred cCcHHHHHHHHHHhhccchhhccc
Confidence 89999999999999 798887654
No 79
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.56 E-value=1.2e-14 Score=99.94 Aligned_cols=108 Identities=16% Similarity=0.203 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC--CCeeccCCccHHHhhh
Q 036627 95 EAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSS--AKYLAGDFYSLADLHH 172 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~AD~~~ 172 (219)
++++.+.|++++...+.+....+. . ++..+...+.+.+.|+.+|+.|++ ++|++|+++|+||+++
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~ 68 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLLG----------A---PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMI 68 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHh----------c---cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHh
Confidence 478889999888644333332221 0 234456777888999999999986 7999999999999999
Q ss_pred hhHHHHHhhCCC----chhhhcchhHHHHHHHHhcCcchHHHhhccC
Q 036627 173 LPYTYYFMKTPC----ASIISERAHVKAWWEDISSRPAFNKVSEGMN 215 (219)
Q Consensus 173 ~~~l~~~~~~~~----~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 215 (219)
++++.++..... ....+.+|+|++|+++|.++|++++++...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~ 115 (124)
T cd03184 69 WPWFERLEALKLLLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTDTE 115 (124)
T ss_pred hHHHHHHHHHHhhccccCCcccChHHHHHHHHhccChHHHHHhCCHH
Confidence 999988764331 1235789999999999999999999987653
No 80
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.52 E-value=6.1e-14 Score=96.44 Aligned_cols=84 Identities=20% Similarity=0.223 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcC----------------CCeeccCCccHHHhhhhhHHHHHhhCC----Cchhhhc
Q 036627 131 PDQGVIDANLEKLSKVLDVYEAKLSS----------------AKYLAGDFYSLADLHHLPYTYYFMKTP----CASIISE 190 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~le~~L~~----------------~~~l~G~~~t~AD~~~~~~l~~~~~~~----~~~~~~~ 190 (219)
.+++..+...+.+.+.|+.||++|++ ++|++|+++|+|||++++.+.++.... +..+...
T Consensus 22 ~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~ 101 (134)
T cd03198 22 SNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPAD 101 (134)
T ss_pred CChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 45566777788899999999999986 679999999999999999998775321 2333578
Q ss_pred chhHHHHHHHHhcCcchHHHhhcc
Q 036627 191 RAHVKAWWEDISSRPAFNKVSEGM 214 (219)
Q Consensus 191 ~p~l~~~~~~~~~~p~~~~~~~~~ 214 (219)
+|+|.+|++++.+||+|++++...
T Consensus 102 ~P~L~aw~~ri~aRPsfk~t~~~~ 125 (134)
T cd03198 102 LTGLWRYLKNAYQREEFTNTCPAD 125 (134)
T ss_pred CHHHHHHHHHHHCCHHHHHHcCCH
Confidence 999999999999999999998765
No 81
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.51 E-value=2.9e-14 Score=94.77 Aligned_cols=76 Identities=24% Similarity=0.334 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhhc
Q 036627 135 VIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSEG 213 (219)
Q Consensus 135 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 213 (219)
..+...+++...++.||+.|++++|++|+++|+|||++++.+.+....+ ....+|+|++|++++.++|+++++.+.
T Consensus 27 ~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~---~~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 27 ARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFG---LLPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred hhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 4556677899999999999999999999999999999999999987643 246799999999999999999998764
No 82
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.51 E-value=1.1e-13 Score=93.71 Aligned_cols=112 Identities=16% Similarity=0.125 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC-CCeeccCCccHHHhh
Q 036627 93 LKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSS-AKYLAGDFYSLADLH 171 (219)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~AD~~ 171 (219)
|.+++++..|+.++.+.+.+............ + .......+...+.+.+.++.+|..|++ ++|++| ++|+||++
T Consensus 1 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~ 75 (114)
T cd03195 1 PRQRARARQVQAWLRSDLLPIRVERSTEVVFA---G-AKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTD 75 (114)
T ss_pred CHhhHHHHHHHHHHHhhHHHHHHhCCccceec---C-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHH
Confidence 35789999999999998876521111011001 1 111133456677778889999999964 589999 59999999
Q ss_pred hhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhhc
Q 036627 172 HLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSEG 213 (219)
Q Consensus 172 ~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 213 (219)
+++++.++...+ .++ . |++.+|++++.+||+|+++++.
T Consensus 76 l~~~~~~~~~~g-~~l-~--p~l~ay~~r~~~rPa~~~~~~~ 113 (114)
T cd03195 76 LALMLNRLVLNG-DPV-P--ERLRDYARRQWQRPSVQAWLAL 113 (114)
T ss_pred HHHHHHHHHHcC-CCC-C--HHHHHHHHHHHCCHHHHHHHhc
Confidence 999999998875 333 2 9999999999999999998853
No 83
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.51 E-value=9.3e-14 Score=90.92 Aligned_cols=74 Identities=24% Similarity=0.517 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCc
Q 036627 132 DQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRP 205 (219)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 205 (219)
+++..+....++.+.|+.+|+.|++++|++|+++|+||+++++.+.++.........+++|+|.+|++++.+||
T Consensus 22 ~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 22 DEEMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTTHTTSHHHHHHHHHHHTSH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHcCC
Confidence 45567788888999999999999999999999999999999999999987763222389999999999999997
No 84
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.50 E-value=6.6e-14 Score=93.31 Aligned_cols=104 Identities=25% Similarity=0.331 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhh
Q 036627 95 EAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLP 174 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~ 174 (219)
+++++++|+.+..+.+.+.+..+.......+ ....+++..+...+++.+.++.||+.|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~ 79 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLG--LGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAA 79 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeecc--CCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHH
Confidence 5789999999988888877654332222111 23556677888899999999999999988899999999999999999
Q ss_pred HHHHHhhCCCchhhhcchhHHHHHHHHh
Q 036627 175 YTYYFMKTPCASIISERAHVKAWWEDIS 202 (219)
Q Consensus 175 ~l~~~~~~~~~~~~~~~p~l~~~~~~~~ 202 (219)
.+.++...+ .+ ..++|+|.+|+++++
T Consensus 80 ~~~~~~~~~-~~-~~~~p~l~~~~~~~~ 105 (105)
T cd03179 80 YTHVADEGG-FD-LADYPAIRAWLARIE 105 (105)
T ss_pred HHHhccccC-CC-hHhCccHHHHHHhhC
Confidence 999987544 23 577999999999874
No 85
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2.2e-12 Score=92.32 Aligned_cols=179 Identities=17% Similarity=0.230 Sum_probs=132.1
Q ss_pred ChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhcccCCCCCCCCCC
Q 036627 13 STCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFKEAGTDLIRHHD 92 (219)
Q Consensus 13 s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~~~~~~l~~p~~ 92 (219)
...|..|..+|+++++||.++.-+ +.+| ++|.|+||.|..+...+.|-.+|..+..++--.- .+++ +
T Consensus 34 ~ascLAVqtfLrMcnLPf~v~~~~-------Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l-~s~l---s 100 (257)
T KOG3027|consen 34 NASCLAVQTFLRMCNLPFNVRQRA-------NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTL-TSWL---S 100 (257)
T ss_pred chhHHHHHHHHHHcCCCceeeecC-------Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhccch-hhhh---h
Confidence 447899999999999999988664 2344 3899999999999999999999999999985321 1233 4
Q ss_pred hHHHHHHHHHHHHHhhhcCcchHHHHHHH----------------------------Hh---cccCCCCCCHHHHHHHHH
Q 036627 93 LKEAALVKVWIEVESQQFHPAIAPIVYEY----------------------------FV---APIQGKSPDQGVIDANLE 141 (219)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~---~~~~~~~~~~~~~~~~~~ 141 (219)
..+++.++..++.++..+-.+=....|.. .. +-.....++....+...+
T Consensus 101 E~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie 180 (257)
T KOG3027|consen 101 EDQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIE 180 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHH
Confidence 55778888777766544332211111100 00 000022355566778888
Q ss_pred HHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCCCc-----hhhhcchhHHHHHHHHhcC
Q 036627 142 KLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTPCA-----SIISERAHVKAWWEDISSR 204 (219)
Q Consensus 142 ~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~-----~~~~~~p~l~~~~~~~~~~ 204 (219)
+...+.+.|+..|+..+||.|++||-+|..+++.+..+...... ...++|++|-+++.|+.+.
T Consensus 181 ~vdkc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 181 QVDKCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999998866522 2467899999999999873
No 86
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.50 E-value=1.4e-13 Score=94.05 Aligned_cols=105 Identities=20% Similarity=0.356 Sum_probs=72.1
Q ss_pred ChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc---CCCeeccCCccHH
Q 036627 92 DLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLS---SAKYLAGDFYSLA 168 (219)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~t~A 168 (219)
++..|+++++++.+. ..+...+..... .... .+++.+.++.||+.|+ +++|++| ++|+|
T Consensus 1 d~~~ra~~~~~~~~~-----~~~~~~~~~~~~----~~~~--------~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlA 62 (120)
T cd03203 1 DPAKREFADELLAYT-----DAFTKALYSSLI----KGDP--------SAEAAAALDYIENALSKFDDGPFFLG-QFSLV 62 (120)
T ss_pred CHHHHHHHHHHHHHH-----HHHHHHHHHHHh----cCCc--------hHHHHHHHHHHHHHHHhcCCCCCcCC-CccHH
Confidence 467899999999872 111111211111 1111 1123456777777776 4799999 99999
Q ss_pred HhhhhhHHHHHhh----CCCchhhhcchhHHHHHHHHhcCcchHHHhhcc
Q 036627 169 DLHHLPYTYYFMK----TPCASIISERAHVKAWWEDISSRPAFNKVSEGM 214 (219)
Q Consensus 169 D~~~~~~l~~~~~----~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 214 (219)
||++++++.++.. ..+.++.+++|+|.+|+++|.++|+|+++....
T Consensus 63 Di~l~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~~ 112 (120)
T cd03203 63 DIAYVPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQDP 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCCH
Confidence 9999999987642 123444568999999999999999999998753
No 87
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.47 E-value=3.3e-13 Score=82.96 Aligned_cols=67 Identities=24% Similarity=0.444 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCC-CchhhhcchhHHHHHHH
Q 036627 134 GVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTP-CASIISERAHVKAWWED 200 (219)
Q Consensus 134 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~-~~~~~~~~p~l~~~~~~ 200 (219)
...+...+.+.+.|+.||+.|++++|++|+++|+||+++++++.++...+ ...+.+.+|+|++|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 46778889999999999999999999999999999999999999999876 33467899999999986
No 88
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.47 E-value=3.2e-13 Score=90.08 Aligned_cols=78 Identities=24% Similarity=0.323 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcCC----------CeeccCCccHHHhhhhhHHHHHhhCCCchh----hhcchhH
Q 036627 129 KSPDQGVIDANLEKLSKVLDVYEAKLSSA----------KYLAGDFYSLADLHHLPYTYYFMKTPCASI----ISERAHV 194 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~----------~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~----~~~~p~l 194 (219)
...+.+..+....++.+.|+.||++|+++ +|++|+++|+|||++++++.++...+ ... ...+|+|
T Consensus 20 ~~~~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~-~~~~~~~~~~~P~l 98 (111)
T cd03204 20 DHDNVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLG-LSRRYWGNGKRPNL 98 (111)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcC-ccccccccccChHH
Confidence 46778888999999999999999999864 49999999999999999999987644 221 3579999
Q ss_pred HHHHHHHhcCcch
Q 036627 195 KAWWEDISSRPAF 207 (219)
Q Consensus 195 ~~~~~~~~~~p~~ 207 (219)
.+|++++.+||+|
T Consensus 99 ~~w~~rv~aRpsf 111 (111)
T cd03204 99 EAYFERVLQRESF 111 (111)
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999986
No 89
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.47 E-value=3.6e-13 Score=88.11 Aligned_cols=95 Identities=14% Similarity=0.254 Sum_probs=74.1
Q ss_pred HHHHHHhcccCCCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 036627 73 TAYVAEKFKEAGTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEA 152 (219)
Q Consensus 73 ~~yL~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~ 152 (219)
++||++.. .+. |+++.+.+.+++|++.....+.. ...+++.+.++.+|+
T Consensus 1 ~r~~~~~~-----~~~-~~~~~~~~~vd~~~d~~~~~l~~-------------------------~~~~~~~~~l~~le~ 49 (96)
T cd03200 1 ARFLYRLL-----GPA-PNAPNAATNIDSWVDTAIFQLAE-------------------------GSSKEKAAVLRALNS 49 (96)
T ss_pred CchHHHHh-----ccc-CCCchHHHHHHHHHHHHHHHHhc-------------------------CCHHHHHHHHHHHHH
Confidence 47899983 378 89999999999999965533320 123345567888999
Q ss_pred hhcCCCeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhc
Q 036627 153 KLSSAKYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISS 203 (219)
Q Consensus 153 ~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~ 203 (219)
+|++++|++|+++|+|||++++.+.+. + .. ...+|+|.+|++++.+
T Consensus 50 ~L~~~~fl~Gd~~tiADi~l~~~l~~~---~-~~-~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 50 ALGRSPWLVGSEFTVADIVSWCALLQT---G-LA-SAAPANVQRWLKSCEN 95 (96)
T ss_pred HHcCCCccCCCCCCHHHHHHHHHHHHc---c-cc-cccChHHHHHHHHHHh
Confidence 999999999999999999999988753 1 11 3579999999999975
No 90
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.46 E-value=5.2e-13 Score=88.26 Aligned_cols=99 Identities=18% Similarity=0.348 Sum_probs=72.2
Q ss_pred HHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHH
Q 036627 100 KVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYF 179 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~ 179 (219)
++|+.+..+.+.+............ .....+....++.+.++.+|+.|++++|++|+++|+||+++++++.+.
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~ 74 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFG-------APLDKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALA 74 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhC-------CHhHHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHH
Confidence 4566777777665433322211111 112345677889999999999999999999999999999999998765
Q ss_pred hhCCCchhhhcchhHHHHHHHHhcCcch
Q 036627 180 MKTPCASIISERAHVKAWWEDISSRPAF 207 (219)
Q Consensus 180 ~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 207 (219)
...+ . ....+|+|++|++++.++|+|
T Consensus 75 ~~~~-~-~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 75 PEGG-V-DLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred hccC-C-ChhhCcHHHHHHHHHHhCcCC
Confidence 4422 2 246899999999999999975
No 91
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.46 E-value=3.3e-13 Score=82.93 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=49.6
Q ss_pred CCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHh
Q 036627 11 PVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEK 79 (219)
Q Consensus 11 ~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~ 79 (219)
+.+++|.+++++|++.|+||+.+.. .. .+ ..+|.|+||+|++||.+|+||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~--~~-----~~--~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCR--AN-----AE--FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEec--CC-----cc--ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 3467899999999999999998843 21 11 1478899999999999999999999999863
No 92
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.42 E-value=2.8e-12 Score=86.76 Aligned_cols=103 Identities=16% Similarity=0.252 Sum_probs=66.3
Q ss_pred HHhhhcCcchHHHHHHHHhcccC--CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhC
Q 036627 105 VESQQFHPAIAPIVYEYFVAPIQ--GKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKT 182 (219)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~ 182 (219)
+..+.+...+..++......+.. .....++.......++...++.+.+.+++++|++|+ +|+||+++++++.+....
T Consensus 9 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~ 87 (114)
T cd03194 9 SAAAEMHSGFAALRSECPMNLRARVPGFELSEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTY 87 (114)
T ss_pred HHHHHHHCcHHHHHHhCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHc
Confidence 44445555555554432222111 112223344444444445555544444567899999 999999999999988754
Q ss_pred CCchhhhcchhHHHHHHHHhcCcchHHHhh
Q 036627 183 PCASIISERAHVKAWWEDISSRPAFNKVSE 212 (219)
Q Consensus 183 ~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 212 (219)
+ .+. .|+|.+|++++.++|+|+++++
T Consensus 88 ~-~~~---~P~l~~~~~rv~~rPsv~~~~~ 113 (114)
T cd03194 88 G-LPL---SPAAQAYVDALLAHPAMQEWIA 113 (114)
T ss_pred C-CCC---CHHHHHHHHHHHCCHHHHHHHh
Confidence 3 222 3999999999999999999875
No 93
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.39 E-value=7.7e-13 Score=90.33 Aligned_cols=78 Identities=23% Similarity=0.287 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHhhcC-CCeeccCCccHHHhhhhhHHHHHhhC-C---CchhhhcchhHHHHHHHHhcCcchHHHh
Q 036627 137 DANLEKLSKVLDVYEAKLSS-AKYLAGDFYSLADLHHLPYTYYFMKT-P---CASIISERAHVKAWWEDISSRPAFNKVS 211 (219)
Q Consensus 137 ~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~AD~~~~~~l~~~~~~-~---~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 211 (219)
....+.+.+.|..||+.|++ ++|++|+++|+||+++++++.++... + +....+.+|+|.+|++++.+||+|++++
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t~ 108 (121)
T cd03201 29 DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKTK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhcC
Confidence 44556788899999999985 79999999999999999988776532 1 1222478999999999999999999988
Q ss_pred hcc
Q 036627 212 EGM 214 (219)
Q Consensus 212 ~~~ 214 (219)
...
T Consensus 109 ~~~ 111 (121)
T cd03201 109 AEK 111 (121)
T ss_pred CCH
Confidence 754
No 94
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.31 E-value=7.6e-12 Score=82.28 Aligned_cols=98 Identities=27% Similarity=0.455 Sum_probs=73.8
Q ss_pred HHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHH
Q 036627 100 KVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYF 179 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~ 179 (219)
+.|+.++.+.+...+......... .....+...+...+++.+.++.||+.|++++|++|+++|+||+++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~ 77 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFV----GPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARL 77 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeecc----CCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHH
Confidence 456667776666665544332211 1133566778888899999999999999999999999999999999999999
Q ss_pred hhCCCch-hhhcchhHHHHHHHH
Q 036627 180 MKTPCAS-IISERAHVKAWWEDI 201 (219)
Q Consensus 180 ~~~~~~~-~~~~~p~l~~~~~~~ 201 (219)
....... +.+.+|+|.+|++++
T Consensus 78 ~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 78 DLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHhhhhhhhhccCccHHHHHHhC
Confidence 8765221 357899999999875
No 95
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.29 E-value=8.1e-12 Score=83.09 Aligned_cols=100 Identities=23% Similarity=0.267 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC--CCeeccCCccHHHhhh
Q 036627 95 EAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSS--AKYLAGDFYSLADLHH 172 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~AD~~~ 172 (219)
++++++.+++.+.+........+ +.. .+....+...+...+.+.+.++.||+.|++ ++|++|+++|+||+++
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l 75 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYF-YEK-----DGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVV 75 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-hcC-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHH
Confidence 46778888877554333332222 110 011123566777788899999999999987 8999999999999999
Q ss_pred hhHHHHHhhCCCchh-hhcchhHHHHHHHH
Q 036627 173 LPYTYYFMKTPCASI-ISERAHVKAWWEDI 201 (219)
Q Consensus 173 ~~~l~~~~~~~~~~~-~~~~p~l~~~~~~~ 201 (219)
++++.++.... ... ...+|+|.+|++++
T Consensus 76 ~~~~~~~~~~~-~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 76 FDVLDYLLYLD-PKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHHHHHHhhC-chhhHHhChhHHHHHHhC
Confidence 99999987654 233 67899999999875
No 96
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=5.6e-10 Score=85.32 Aligned_cols=180 Identities=17% Similarity=0.192 Sum_probs=129.2
Q ss_pred CChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE-eCCeeeechHHHHHHHHHhcccCCCCCCCC
Q 036627 12 VSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE-DGDLTLFESRAMTAYVAEKFKEAGTDLIRH 90 (219)
Q Consensus 12 ~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~i~es~aI~~yL~~~~~~~~~~l~~p 90 (219)
.++-|.++.+++++++-|.+....+. ++. .|.|++|+|+ ++|..+.+-.-|..+|.+....- .+- +
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN-------~~~---s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky--~~d-~ 82 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN-------PWR---SPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKY--NLD-A 82 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC-------CCC---CCCCCCCeEEecCCceeccHHHHHHHHHHhcccC--CcC-c
Confidence 57899999999999997777666542 332 7899999998 55699999999999999952211 111 2
Q ss_pred C-ChHHHHHHHHHHHHHhhhcCcchHHHHHHH----------Hh-----------ccc-----------CCCCCCHHHHH
Q 036627 91 H-DLKEAALVKVWIEVESQQFHPAIAPIVYEY----------FV-----------API-----------QGKSPDQGVID 137 (219)
Q Consensus 91 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-----------~~~-----------~~~~~~~~~~~ 137 (219)
. +..+.+....+++++...+.+++...+|-. +. .+. .-.+......+
T Consensus 83 dl~~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~ 162 (313)
T KOG3028|consen 83 DLSAKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTERED 162 (313)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHH
Confidence 2 266788889999988888877765544421 00 000 00012223455
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCCCc--h---hhhcchhHHHHHHHHhcC
Q 036627 138 ANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTPCA--S---IISERAHVKAWWEDISSR 204 (219)
Q Consensus 138 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~--~---~~~~~p~l~~~~~~~~~~ 204 (219)
.......+.++.|.+.|++.+|++|+++|--|+.+++.+..+.....+ . -...+++|.++++++.+.
T Consensus 163 ~i~~~Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s~ 234 (313)
T KOG3028|consen 163 QIYKDASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRSL 234 (313)
T ss_pred HHHHHHHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHHH
Confidence 566677889999999999999999999999999999999996544311 1 133499999999998763
No 97
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.27 E-value=2e-11 Score=76.96 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=62.0
Q ss_pred CceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 3 TLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 3 ~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
.+++||+.+.||+|.+++.+|...||+|+.+.++-.. ...++...++..+||++..+|..+.++..|.+||+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~---~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDA---RGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCCh---HHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 4699999999999999999999999999998876331 22455666788999999999999999999999984
No 98
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.27 E-value=1.7e-11 Score=84.17 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhc
Q 036627 136 IDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISS 203 (219)
Q Consensus 136 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~ 203 (219)
.+...+.+.+.|+.+|+.|++++|+.|+++|+||+++++++.+.....+....+.+|+|.+|+++|.+
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhc
Confidence 44667778999999999999999999999999999999999998875444456789999999999976
No 99
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.22 E-value=3.4e-11 Score=79.37 Aligned_cols=67 Identities=24% Similarity=0.373 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC--eeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhc
Q 036627 134 GVIDANLEKLSKVLDVYEAKLSSAK--YLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISS 203 (219)
Q Consensus 134 ~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~ 203 (219)
...+...+++.+.+..+++.|++++ |++|++||+||+++++.|..+... ...+++|+|.+|++||.+
T Consensus 31 ~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~---~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 31 ASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWA---DFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCC---HHTTTCHHHHHHHHHHHT
T ss_pred hhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcC
Confidence 3556777788999999999999876 999999999999999999777732 222689999999999974
No 100
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.22 E-value=7.7e-11 Score=75.91 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCC--Cc---hhhhcchhHHHHHHHHh
Q 036627 135 VIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTP--CA---SIISERAHVKAWWEDIS 202 (219)
Q Consensus 135 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~--~~---~~~~~~p~l~~~~~~~~ 202 (219)
......+++.+.++.+|+.|++++|++|+++|+|||++++.+.++.... .. .....+|+|++|++++.
T Consensus 16 ~~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 16 LTREIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 3446677889999999999999999999999999999999999887532 11 13567999999999973
No 101
>PRK10638 glutaredoxin 3; Provisional
Probab=99.21 E-value=6.4e-11 Score=75.40 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=63.1
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
|+ ++++|..+.||+|++++.+|+..||+|+.+.++... ....++.+.++..++|++..+|..+.+...+..+-.
T Consensus 1 m~-~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~--~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MA-NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA--AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CC-cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 66 799999999999999999999999999999886432 134567888999999999999999999887776543
No 102
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.19 E-value=1.5e-10 Score=71.58 Aligned_cols=58 Identities=19% Similarity=0.364 Sum_probs=50.3
Q ss_pred CChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHh
Q 036627 12 VSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEK 79 (219)
Q Consensus 12 ~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~ 79 (219)
.||+|.++.++|+++|+||+.+...- + ..+|.|++|+|+++|+.+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n-------~---~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN-------P---WRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC-------C---CCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 57999999999999999998875431 1 2278999999999999999999999999875
No 103
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.12 E-value=3.8e-10 Score=69.80 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=60.6
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
++++|..+.||+|.+++-+|...||+|+.+.++-.. ....+.......++|++..+|..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~---~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI---TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh---hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 689999999999999999999999999999887432 12344455778899999999999999999999974
No 104
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=99.12 E-value=1e-09 Score=71.86 Aligned_cols=113 Identities=15% Similarity=0.081 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC-CCeeccCCccHHHh
Q 036627 92 DLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANLEKLSKVLDVYEAKLSS-AKYLAGDFYSLADL 170 (219)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~AD~ 170 (219)
+..++++.+++..++.++|.+.....-.+-.+ ......+..+.....+.+.+...+..|.. ++||+|+ .|+||.
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf----~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~ 75 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVF----RGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADA 75 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHH----S--------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhh----cCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHH
Confidence 45789999999999999987765543222211 12333455667777778888888888887 7899997 999999
Q ss_pred hhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchHHHhhc
Q 036627 171 HHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFNKVSEG 213 (219)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 213 (219)
.+++++.++..++. .-.+.+..|.++.-++|++++++..
T Consensus 76 dlA~ml~Rl~~~gd----~vP~~l~~Ya~~qwqrpsVQ~Wla~ 114 (117)
T PF14834_consen 76 DLALMLNRLVTYGD----PVPERLADYAERQWQRPSVQRWLAL 114 (117)
T ss_dssp HHHHHHHHHHTTT--------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCC----CCCHHHHHHHHHHHCCHHHHHHHHH
Confidence 99999999998772 2357899999999999999999864
No 105
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.10 E-value=5.5e-10 Score=73.40 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhC-CCchhhhcchhHHHHHHHH
Q 036627 129 KSPDQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKT-PCASIISERAHVKAWWEDI 201 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~-~~~~~~~~~p~l~~~~~~~ 201 (219)
...++...+....++.+.|+.+|++|++++| +++|+|||++++.+.+.... .+..+...+|+|.+|+++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 28 EKRSQPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred hhhChHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 4566778889999999999999999998888 89999999999999988753 2334467899999999985
No 106
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.09 E-value=2.2e-10 Score=78.70 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhC-----CCchhhhcchhHHHHHHHHh
Q 036627 132 DQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKT-----PCASIISERAHVKAWWEDIS 202 (219)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~-----~~~~~~~~~p~l~~~~~~~~ 202 (219)
.....++..+.+.+.|+.|++.|++++||+|++||.||+++++.+..+... ........+|+|.+|++||.
T Consensus 51 gr~~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 51 DDKTLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 344567788888999999999999999999999999999999999887643 11123678999999999973
No 107
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=99.02 E-value=1.5e-09 Score=75.68 Aligned_cols=72 Identities=15% Similarity=0.250 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCCCc-----hhhhcchhHHHHHHHHhc
Q 036627 132 DQGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTPCA-----SIISERAHVKAWWEDISS 203 (219)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~-----~~~~~~p~l~~~~~~~~~ 203 (219)
++...+...++..+.++.|++.|++++|++|+++|.+|+++++.+..+...... .....+|+|.+|++||.+
T Consensus 58 ~~~~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 58 ETEVEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 345567778888899999999999999999999999999999998877643311 236789999999999975
No 108
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.91 E-value=4.2e-09 Score=65.25 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=57.9
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTA 74 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~ 74 (219)
+++||+.+.||+|.+++.+|+..||+|+.+.++-. ....+++.+.++..++|++..+|..|.+-.+..+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~--~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF--PERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 58999999999999999999999999999988633 2234567888999999999999998887666544
No 109
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.86 E-value=8.8e-09 Score=64.96 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=49.0
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeec
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFE 68 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~e 68 (219)
++++|+.+.||+|.+++-+|..+||+|+.+.++-.. ...+....++..+||+++.++..+.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~---~~~~~~~~~g~~~vPvv~i~~~~~~G 63 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP---EAAETLRAQGFRQLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHHcCCCCcCEEEECCEEEec
Confidence 589999999999999999999999999999987331 11222344688999999987766543
No 110
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.85 E-value=9.1e-09 Score=71.61 Aligned_cols=64 Identities=22% Similarity=0.313 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhhc-CCCeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhc
Q 036627 140 LEKLSKVLDVYEAKLS-SAKYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISS 203 (219)
Q Consensus 140 ~~~~~~~l~~le~~L~-~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~ 203 (219)
++.+...++.+-+.+. +++|+.|++||+||+++++++..+....+..-+..+|+|.+|+++|.+
T Consensus 81 r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 81 REWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPAFKDMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhccccchhhCcCHHHHHHHHHH
Confidence 3334444444434444 478999999999999999999999877544225689999999999976
No 111
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.83 E-value=1.3e-08 Score=62.46 Aligned_cols=70 Identities=7% Similarity=0.059 Sum_probs=58.9
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAY 75 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~y 75 (219)
++++|+.+.||+|++++.+|...+++|+.+.++-.. ....++...++..++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~--~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDG--ELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 478999999999999999999999999988776331 1335667789999999999999999999888764
No 112
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.82 E-value=1.4e-08 Score=62.71 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=55.6
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeee--echHHHHHHH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTL--FESRAMTAYV 76 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i--~es~aI~~yL 76 (219)
+++||+.+.||+|++++.+|...|++|..+.++-. ....+++...++.+.+|+++.+|..+ +++..|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD--SAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC--HHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 47999999999999999999999999988877532 11224566778999999999888877 5556666554
No 113
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.79 E-value=1.5e-08 Score=62.45 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=52.9
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeech
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFES 69 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es 69 (219)
++++|+.+.||+|.+++.+|.+.|++|..+.++.. .+..+++.+.||.+++|+++.+|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~--~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED--PEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC--HHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 47899999999999999999999999998887643 22335677789999999999888776553
No 114
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.77 E-value=2.9e-08 Score=61.74 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=56.8
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCC-CCCeEEeCCeeeechHHHHHHHH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFG-QIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~-~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
+++||+.+.||+|.+++-+|+..||+|+.+.++... ....++....... ++|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~--~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDP--ALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 478999999999999999999999999999887431 1123333444444 89999999999999988887643
No 115
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.3e-08 Score=62.16 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=57.0
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
++++|..+.||||.++.-+|..+|++|+.+.++....+.........++..+||++..+|..+.....+-++..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~ 75 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEA 75 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHh
Confidence 48999999999999999999999999999999866432122223344589999999999988776555555443
No 116
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.67 E-value=8.6e-08 Score=60.25 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=59.1
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAE 78 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~ 78 (219)
+++|+.+.||+|.+++-+|+..||+|+.+.++... ....++........+|++..+|..+.+...+.++-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~--~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP--ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH--HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 57999999999999999999999999999987432 1224555667789999999999999988888776554
No 117
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.57 E-value=3.4e-07 Score=58.41 Aligned_cols=76 Identities=13% Similarity=0.216 Sum_probs=61.3
Q ss_pred ceEEEecCCChhHHHHHHHHHH-----cCCccEEEEecCCCCCCCCcchhhhCC--CCCCCeEEeCCeeeechHHHHHHH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHE-----KAVDFALVPVDLFSCEHKQPPFLAKNP--FGQIPVLEDGDLTLFESRAMTAYV 76 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~-----~gi~~~~~~~~~~~~~~~~~~~~~~~p--~~~vP~L~~~~~~i~es~aI~~yL 76 (219)
.+++|+.+.||+|.+++-+|.. .|++|+.+.++-... ...++..... ..+||++..||..+.+...|.+++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~--~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGI--SKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChH--HHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHH
Confidence 4899999999999999999999 899999998874311 1223443333 368999999999999999999999
Q ss_pred HHhcc
Q 036627 77 AEKFK 81 (219)
Q Consensus 77 ~~~~~ 81 (219)
...++
T Consensus 80 ~~~~~ 84 (85)
T PRK11200 80 KENLG 84 (85)
T ss_pred HHhcc
Confidence 88764
No 118
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.56 E-value=1.5e-07 Score=58.71 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=50.4
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhC-CCCCCCeEE-eCCeeeechH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKN-PFGQIPVLE-DGDLTLFESR 70 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~-p~~~vP~L~-~~~~~i~es~ 70 (219)
+++||+.++||+|++++-+|...|++|+.+.++-. ......+..+| +...+|+++ ++|..+.++.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~--~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEED--EGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCC--HhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 47899999999999999999999999998776522 22234555666 899999996 6777766543
No 119
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.56 E-value=2.9e-07 Score=60.35 Aligned_cols=73 Identities=11% Similarity=0.023 Sum_probs=57.9
Q ss_pred CceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCC-CCCcchhhhCCCCCCCeEEeCCeeeechHHHHHH
Q 036627 3 TLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCE-HKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAY 75 (219)
Q Consensus 3 ~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~y 75 (219)
.++++|..+.||+|.+++-+|...||+|+.+.++..... .....+...+...+||++..+|..|.+...+.+.
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 469999999999999999999999999999988743210 0112344557889999999999999988777764
No 120
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.55 E-value=2e-07 Score=57.49 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=44.4
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCe
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDL 64 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~ 64 (219)
+++|+.+.||+|.+++-+|...||+|+.+.++-.. ...+....++..+||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~---~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP---EAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHHcCCcccCEEEECCC
Confidence 57999999999999999999999999999887331 1122233457779999987654
No 121
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.54 E-value=3.8e-07 Score=57.62 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=60.9
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCC-CCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCE-HKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAE 78 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~ 78 (219)
++++|+.+.||+|.+++-+|...+++|+...++..... .......+.+...++|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 47899999999999999999999999999998865321 0112344667788999999999999999999887654
No 122
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.51 E-value=6e-07 Score=57.34 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=58.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcC-----CccEEEEecCCCCCCCCcchhhhCCC--CCCCeEEeCCeeeechHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKA-----VDFALVPVDLFSCEHKQPPFLAKNPF--GQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~p~--~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
+++|+.+.||+|.+++-+|...+ ++|+.+.++-.. ....++...... .+||++..+|..+.++..|.+++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~--~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG--ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 58999999999999999999985 567777765321 012344444433 689999999999999999999998
Q ss_pred Hhcc
Q 036627 78 EKFK 81 (219)
Q Consensus 78 ~~~~ 81 (219)
+.++
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 8764
No 123
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.50 E-value=1.6e-07 Score=55.67 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=49.4
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeee
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTL 66 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i 66 (219)
+++|+.+.||+|.+++-+|...|++|+...++-.. ...+++...+...++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 57999999999999999999999999999998542 1234555566889999999888764
No 124
>PHA03050 glutaredoxin; Provisional
Probab=98.47 E-value=7.1e-07 Score=59.40 Aligned_cols=72 Identities=8% Similarity=0.093 Sum_probs=58.0
Q ss_pred CceEEEecCCChhHHHHHHHHHHcCC---ccEEEEecCCC-CCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHH
Q 036627 3 TLIKLYGAPVSTCTARVMTCLHEKAV---DFALVPVDLFS-CEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTA 74 (219)
Q Consensus 3 ~~~~Ly~~~~s~~~~~~~~~l~~~gi---~~~~~~~~~~~-~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~ 74 (219)
.++++|..+.||||.+++-+|...|| +|+.+.++-.. +.....++.+.+...+||.+..+|..|.+...+.+
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 46999999999999999999999999 78888887421 11112456677888899999999999988877766
No 125
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.29 E-value=3.5e-06 Score=55.06 Aligned_cols=72 Identities=19% Similarity=0.114 Sum_probs=55.6
Q ss_pred CceEEEec-----CCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHH
Q 036627 3 TLIKLYGA-----PVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYV 76 (219)
Q Consensus 3 ~~~~Ly~~-----~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL 76 (219)
.++.+|.. +.||||.+++-+|...||+|+.+.++-. .....+....+...+||.+..+|..|.+...+.+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~--~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED--PEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 46788865 7899999999999999999998877522 112234445677889999999999988887777643
No 126
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.25 E-value=6.6e-06 Score=50.40 Aligned_cols=56 Identities=25% Similarity=0.422 Sum_probs=48.4
Q ss_pred CChhHHHHHHHHHHcCCc---cEEEEecCCCCCCCCcchhhhCCCCCCCeEEe-CCeeeechHHHHHHHH
Q 036627 12 VSTCTARVMTCLHEKAVD---FALVPVDLFSCEHKQPPFLAKNPFGQIPVLED-GDLTLFESRAMTAYVA 77 (219)
Q Consensus 12 ~s~~~~~~~~~l~~~gi~---~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~i~es~aI~~yL~ 77 (219)
.+|.|.++.++|+..+.+ |+.+..+ +++ ++|.|++|+|.+ +++.+.+-..|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~-------n~~---~Sptg~LP~L~~~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN-------NPW---LSPTGELPALIDSGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC-------CCC---cCCCCCCCEEEECCCcEEECHHHHHHhhC
Confidence 689999999999999999 7777664 222 389999999998 9999999999999983
No 127
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.20 E-value=8.3e-06 Score=51.62 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=57.8
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCc--cEEEEecCCCCCC-CCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVD--FALVPVDLFSCEH-KQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAE 78 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~--~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~ 78 (219)
+++|+.++||+|.+++-+|...+++ |+...++-..... ......+.....++|++..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 8888887542110 011244556778999999999999999888876654
No 128
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.17 E-value=9.1e-06 Score=52.35 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=56.0
Q ss_pred ceEEEec-----CCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHH
Q 036627 4 LIKLYGA-----PVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYV 76 (219)
Q Consensus 4 ~~~Ly~~-----~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL 76 (219)
++.+|.. +.||+|.+++-+|...||+|+.+.++-. .....+....+...++|++..+|..|.+...+.+..
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 5778865 6899999999999999999999998632 112234455677889999999999999888877744
No 129
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=98.05 E-value=4.6e-05 Score=52.27 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcch
Q 036627 136 IDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAF 207 (219)
Q Consensus 136 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 207 (219)
.....++++..|..++..+.......| ++|+-||.+|+.|+.+....+..+ -|++++|+++|++...+
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivkgi~~---P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVKGIQW---PPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCTTS------HHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhccCCcC---CHHHHHHHHHHHHHcCC
Confidence 456667788888888888886555555 899999999999999988775544 68999999999986554
No 130
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.86 E-value=0.00013 Score=49.60 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcch
Q 036627 138 ANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAF 207 (219)
Q Consensus 138 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 207 (219)
...++++..|..++..+..... +++.+|+-||.+|+.|+.+....+..+ .|++++|+++|++..++
T Consensus 60 ~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~vkgi~~---P~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 60 QYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLTLVKGLVF---PPKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhhhhcCCCC---CHHHHHHHHHHHHHhCC
Confidence 5566777888888888855444 455799999999999999988765443 58999999999987654
No 131
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.82 E-value=7.5e-05 Score=52.39 Aligned_cols=70 Identities=14% Similarity=-0.010 Sum_probs=54.7
Q ss_pred ceEEEecC------CChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCC----CCCCCeEEeCCeeeechHHHH
Q 036627 4 LIKLYGAP------VSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNP----FGQIPVLEDGDLTLFESRAMT 73 (219)
Q Consensus 4 ~~~Ly~~~------~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p----~~~vP~L~~~~~~i~es~aI~ 73 (219)
.++||..+ ++|+|.+++-+|+..+|+|+++.+++... ..++..+... ..+||.+..+|..|.+...+.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~--~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~ 78 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSG--FREELRELLGAELKAVSLPRVFVDGRYLGGAEEVL 78 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHH--HHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHH
Confidence 37899999 89999999999999999999999875421 1233444433 378999999999998887777
Q ss_pred HH
Q 036627 74 AY 75 (219)
Q Consensus 74 ~y 75 (219)
+.
T Consensus 79 ~L 80 (147)
T cd03031 79 RL 80 (147)
T ss_pred HH
Confidence 63
No 132
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.76 E-value=9.4e-05 Score=61.02 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=54.9
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcch---------hhhCCCCCCCeEEeCCeeeechHH
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPF---------LAKNPFGQIPVLEDGDLTLFESRA 71 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~---------~~~~p~~~vP~L~~~~~~i~es~a 71 (219)
|. ++++|..+.||+|.++.-+|...||+|+.+.++-.. ...++ ...+...+||++..+|..|.+-..
T Consensus 1 m~-~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~---~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~ 76 (410)
T PRK12759 1 MV-EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDV---KRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDN 76 (410)
T ss_pred CC-cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCh---hHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchH
Confidence 55 699999999999999999999999999999997221 11121 122467789999999999888877
Q ss_pred HHH
Q 036627 72 MTA 74 (219)
Q Consensus 72 I~~ 74 (219)
+..
T Consensus 77 l~~ 79 (410)
T PRK12759 77 LMA 79 (410)
T ss_pred HHH
Confidence 765
No 133
>PRK10824 glutaredoxin-4; Provisional
Probab=97.59 E-value=0.00032 Score=47.03 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=56.4
Q ss_pred CceEEEec-----CCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHH
Q 036627 3 TLIKLYGA-----PVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYV 76 (219)
Q Consensus 3 ~~~~Ly~~-----~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL 76 (219)
.++.+|.. +.||||.++.-+|...|++|..+.++-. ......+...+...+||-+-.+|+.|.+...+.+..
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d--~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN--PDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 35777766 5899999999999999999998877532 112234556788899999999999999987777743
No 134
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.54 E-value=0.0004 Score=41.79 Aligned_cols=58 Identities=9% Similarity=0.184 Sum_probs=42.3
Q ss_pred ceEEEecCCChhHHHHHHHHHHc-----CCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeee
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEK-----AVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLF 67 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~ 67 (219)
++++|+.++||+|.++.-+|+.. +++|..+.++ ..++.........+|++..+|+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~------~~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA------EFPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc------cCHhHHHHcCCcccCEEEECCEEEE
Confidence 47899999999999999998875 5666555543 2244444455667999988887654
No 135
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00069 Score=44.52 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=59.4
Q ss_pred CCceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCC-CCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHH
Q 036627 2 TTLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCE-HKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 2 ~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
..+..+|.-..||+|.++.-+|...|+++..+.+|-.... +-.....++.-..+||.+..+|+.|.+...+..+-.
T Consensus 13 ~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 13 ENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred cCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 3568899999999999999999999999999999865311 111223345667799999999999999888877543
No 136
>PTZ00062 glutaredoxin; Provisional
Probab=97.39 E-value=0.00068 Score=50.33 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=54.9
Q ss_pred CceEEEec-----CCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHH
Q 036627 3 TLIKLYGA-----PVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAY 75 (219)
Q Consensus 3 ~~~~Ly~~-----~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~y 75 (219)
.++.||.. +.||+|.++.-+|...||+|+...++-. +.........+...++|.+..+|+.|.+...+.+.
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d--~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED--PDLREELKVYSNWPTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 46778855 6899999999999999999998877622 21223455667788999999999998887776663
No 137
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.00021 Score=59.19 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=80.4
Q ss_pred eCCeeeechHHHHHHHHHhcccCCCCCCCCCChHHHHHHHHHHHHHhhhcCcchHHHHHHHHhcccCCCCCCHHHHHHHH
Q 036627 61 DGDLTLFESRAMTAYVAEKFKEAGTDLIRHHDLKEAALVKVWIEVESQQFHPAIAPIVYEYFVAPIQGKSPDQGVIDANL 140 (219)
Q Consensus 61 ~~~~~i~es~aI~~yL~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (219)
.+|..+.++..+..|....... .+.++ +.+ .++.+++.|.++... ...
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~-~~~lf-~~~-~d~~~vd~w~~~s~~-----------------------------~~~ 90 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKA-DPKLF-GNN-IDRSQVDHWVSFSST-----------------------------FSF 90 (712)
T ss_pred cccccccCCccchhhhhhhccc-CHhHc-CCc-ccHHHHHHHHHHhhh-----------------------------cch
Confidence 4567777777777887744332 23588 665 789999999986433 122
Q ss_pred HHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCC-CchhhhcchhHHHHHHHHhcCcchHHHh
Q 036627 141 EKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTP-CASIISERAHVKAWWEDISSRPAFNKVS 211 (219)
Q Consensus 141 ~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~-~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 211 (219)
..+...+..++..|.-+.||+|.++|+||+++|+.+..-.... .....+.+-++.+|++-....+..+.++
T Consensus 91 ~~~s~~~~~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~~~~~~~a~~~v~ 162 (712)
T KOG1147|consen 91 DEISSSLSELDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYDLPEFQEAHNKVL 162 (712)
T ss_pred HHHHHHHHHHHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcCcHhHHHHHHHHH
Confidence 2345667778888888899999999999999999988753322 1112346788999998444444444443
No 138
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0017 Score=39.21 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=48.6
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCC--------CCCCCcchhh--hCCCCCCCeEE-eCCeeee
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFS--------CEHKQPPFLA--KNPFGQIPVLE-DGDLTLF 67 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~--------~~~~~~~~~~--~~p~~~vP~L~-~~~~~i~ 67 (219)
|+++ +||+...||-|.-..-.|+-.+++|+.+.+.-.- --+..++|-+ .|.+--+|+|. +||+++.
T Consensus 1 mskp-~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKP-KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCCc-eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 7755 9999999999999999999999999999885210 0012344443 35566799995 7787766
No 139
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.90 E-value=0.0018 Score=44.70 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=30.7
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
+++|+.+.|++|.+++-+|...||+|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 89999999999999999999999999999885
No 140
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.88 E-value=0.0017 Score=43.50 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=30.7
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecC
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDL 37 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~ 37 (219)
++||+.+.||+|.+++-+|+..||+|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999998863
No 141
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.85 E-value=0.0021 Score=42.57 Aligned_cols=32 Identities=19% Similarity=0.552 Sum_probs=30.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
+++|+.+.||+|++++-+|+..||+|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 57999999999999999999999999999885
No 142
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.79 E-value=0.0025 Score=42.95 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=30.4
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
+++|+.+.|+.|.+++-+|...||+|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 78999999999999999999999999999885
No 143
>PRK10026 arsenate reductase; Provisional
Probab=96.74 E-value=0.0032 Score=43.87 Aligned_cols=35 Identities=11% Similarity=0.279 Sum_probs=32.5
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
|+ ++++|+.+.|.-|++++-.|+..|++|+.+.+-
T Consensus 1 m~-~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 1 MS-NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CC-EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 64 799999999999999999999999999999874
No 144
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.50 E-value=0.015 Score=37.48 Aligned_cols=68 Identities=21% Similarity=0.161 Sum_probs=50.1
Q ss_pred eEEEecCCCh------hHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhC----CCCCCCeEEeCCeeeechHHHHH
Q 036627 5 IKLYGAPVST------CTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKN----PFGQIPVLEDGDLTLFESRAMTA 74 (219)
Q Consensus 5 ~~Ly~~~~s~------~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~----p~~~vP~L~~~~~~i~es~aI~~ 74 (219)
+++|+...++ .|++++.+|.-+||+|+.+.++.... ...+..... +..+||-+..++..+.+...+.+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~--~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEE--NRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHH--HHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 6788877653 67889999999999999999986421 223433333 45789999888988888755554
No 145
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.47 E-value=0.0058 Score=42.16 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=30.7
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
+++|+.+.|+.|.++.-+|...||+|+.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 78999999999999999999999999999886
No 146
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.40 E-value=0.0064 Score=42.01 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=30.7
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
+++|+.+.|+.|++++-.|...||+|+.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 78999999999999999999999999999886
No 147
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.38 E-value=0.0061 Score=41.17 Aligned_cols=32 Identities=22% Similarity=0.573 Sum_probs=29.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
+++|+.+.||+|++++-+|...||+|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 57999999999999999999999999988875
No 148
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.19 E-value=0.039 Score=34.57 Aligned_cols=55 Identities=29% Similarity=0.367 Sum_probs=39.1
Q ss_pred ceEEEecCCChhHHHHHHHHHHcC--CccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCC
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKA--VDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGD 63 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~g--i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~ 63 (219)
+++||+.++|+.|..+.-.|+... .+|+...+|..+ +++.....- -.||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THHHHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHHHHHHhc-CCCCEEEEcC
Confidence 489999999999999999999654 466777777663 344433332 4899998666
No 149
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.18 E-value=0.0097 Score=39.36 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=30.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
+++|+.+.|+.|++++-.|...||+|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999999885
No 150
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.04 E-value=0.012 Score=39.41 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=30.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
++||+.+.|+.|++++-.|+..||+|+.+.+-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 78999999999999999999999999999875
No 151
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.91 E-value=0.034 Score=35.57 Aligned_cols=58 Identities=7% Similarity=0.003 Sum_probs=41.3
Q ss_pred ceEEEecCCChhHHHHHHHHHHc-----CCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeee
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEK-----AVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLF 67 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~ 67 (219)
.+.+|..++|++|..+.-++... +|.++.+.++ ..++......-..+|+++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~------~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA------LFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH------hCHHHHHHcCCccCCEEEECCEEEE
Confidence 37899999999999888777665 5666666554 2344555566678999987776654
No 152
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.87 E-value=0.018 Score=38.79 Aligned_cols=33 Identities=18% Similarity=0.549 Sum_probs=30.8
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
++++|+.+.|.-|++++-.|+..||+|+.+.+-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 499999999999999999999999999988774
No 153
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.80 E-value=0.067 Score=32.99 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=40.5
Q ss_pred eEEEecCCChhHHHH----HHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeee
Q 036627 5 IKLYGAPVSTCTARV----MTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLF 67 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~----~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~ 67 (219)
+.+|. ++||.|..+ .-++.+.|++++...++- .++ ....-...+|++..||..++
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~-a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNE-ILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHH-HHHcCCCcCCEEEECCEEEE
Confidence 77777 899999998 668888999999888871 122 22245678999987876653
No 154
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.62 E-value=0.025 Score=38.70 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=31.0
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
.++||+.+.|.-|++++-.|+..||+|+.+.+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 589999999999999999999999999999874
No 155
>PRK10853 putative reductase; Provisional
Probab=95.52 E-value=0.026 Score=38.15 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=30.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
+++|+.+.|.-|++++-.|+..||+|+.+.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 79999999999999999999999999988774
No 156
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.47 E-value=0.081 Score=32.76 Aligned_cols=57 Identities=11% Similarity=0.163 Sum_probs=40.0
Q ss_pred ceEEEecCCChhHHHHHHHHHH----cCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCe
Q 036627 4 LIKLYGAPVSTCTARVMTCLHE----KAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDL 64 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~ 64 (219)
++++|+.++||+|..+.-.++. .+..+....++... .++.........+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME----NPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc----CHHHHHHcCCccCCEEEECCE
Confidence 4789999999999988888764 35446666666542 234444456668999986665
No 157
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.058 Score=34.78 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=51.5
Q ss_pred ceEEEe-----cCCChhHHHHHHHHHHcC-CccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHH
Q 036627 4 LIKLYG-----APVSTCTARVMTCLHEKA-VDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYV 76 (219)
Q Consensus 4 ~~~Ly~-----~~~s~~~~~~~~~l~~~g-i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL 76 (219)
++.||- .|-|+||.++--+|...| ++|..+.| ...+.-....+..+-..+.|=|=.+|..+.+|.-|.+..
T Consensus 16 ~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnV--L~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~ 92 (105)
T COG0278 16 PVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDV--LQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMY 92 (105)
T ss_pred ceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEee--ccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHH
Confidence 455662 567999999999999999 56655554 322223445556688999999988999998887666644
No 158
>PHA02125 thioredoxin-like protein
Probab=95.00 E-value=0.12 Score=31.75 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=38.7
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCe
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDL 64 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~ 64 (219)
+.+|+.++|+.|.++.-.|+ ++.++...++.. ...+......-..+|++. +|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~----~~~~l~~~~~v~~~PT~~-~g~ 54 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTD----EGVELTAKHHIRSLPTLV-NTS 54 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCC----CCHHHHHHcCCceeCeEE-CCE
Confidence 78999999999998887775 456766666643 234555666677899998 443
No 159
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.90 E-value=0.052 Score=36.32 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=29.6
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
+++|+.+.|.-|++++-.|+..|++|+.+.+-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988764
No 160
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=94.83 E-value=0.056 Score=36.32 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=29.6
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
+++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988764
No 161
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.75 E-value=0.23 Score=30.53 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=37.8
Q ss_pred eEEEecCCChhHHHHHH----HHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeech
Q 036627 5 IKLYGAPVSTCTARVMT----CLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFES 69 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~----~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es 69 (219)
+++ ..+.||+|.++.- ++...|+.++...+. ..++. .......+|+++.||...+..
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~------~~~~~-~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIE------DFEEI-EKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETT------THHHH-HHTT-SSSSEEEETTEEEEES
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc------CHHHH-HHcCCCCCCEEEECCEEEEEe
Confidence 677 4566999996665 555677777666652 12333 556788999999888775543
No 162
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=93.48 E-value=0.25 Score=35.66 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhcCC---CeeccCC-ccHHHhhhhhHHHHHhh
Q 036627 143 LSKVLDVYEAKLSSA---KYLAGDF-YSLADLHHLPYTYYFMK 181 (219)
Q Consensus 143 ~~~~l~~le~~L~~~---~~l~G~~-~t~AD~~~~~~l~~~~~ 181 (219)
..+++..|++.|+.. +|+.|+. +|-+||.+++.|.-+..
T Consensus 113 a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l~ 155 (168)
T PF11801_consen 113 AMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLLV 155 (168)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHhc
Confidence 467899999999987 9999987 99999999999998774
No 163
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.10 E-value=0.33 Score=27.47 Aligned_cols=53 Identities=26% Similarity=0.304 Sum_probs=35.5
Q ss_pred eEEEecCCChhHHHHHHHHH-----HcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE
Q 036627 5 IKLYGAPVSTCTARVMTCLH-----EKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE 60 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~-----~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 60 (219)
+.+|+...|+.|.+.+-.+. ..++.+..+.++-.. ........++...+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP---ALEKELKRYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh---HHhhHHHhCCCccccEEE
Confidence 46788889999999999999 455555555554321 111112357888999996
No 164
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=92.73 E-value=0.56 Score=31.03 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=45.1
Q ss_pred CChhHHHHHHHHHHc---CCccEEEEecCCCCCCCCcchhhh-C-CCCCCCeEE-eCC-------------eeeechHHH
Q 036627 12 VSTCTARVMTCLHEK---AVDFALVPVDLFSCEHKQPPFLAK-N-PFGQIPVLE-DGD-------------LTLFESRAM 72 (219)
Q Consensus 12 ~s~~~~~~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~-~-p~~~vP~L~-~~~-------------~~i~es~aI 72 (219)
.||.|..+.=+|... .-..++++|++.. -..+...+ . .....|+|+ .+| ..|.++..|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R---PR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR---PRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC---chHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 377777777777653 3356777777653 11222222 1 256789998 433 268999999
Q ss_pred HHHHHHhcccC
Q 036627 73 TAYVAEKFKEA 83 (219)
Q Consensus 73 ~~yL~~~~~~~ 83 (219)
++||.++++-+
T Consensus 100 ~~~La~r~g~p 110 (112)
T PF11287_consen 100 LRYLAERHGFP 110 (112)
T ss_pred HHHHHHHcCCC
Confidence 99999999853
No 165
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=92.72 E-value=0.3 Score=31.83 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=37.4
Q ss_pred eEEEecCCCh------hHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhh---------CCCCCCCeEEeCCeeeech
Q 036627 5 IKLYGAPVST------CTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAK---------NPFGQIPVLEDGDLTLFES 69 (219)
Q Consensus 5 ~~Ly~~~~s~------~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~---------~p~~~vP~L~~~~~~i~es 69 (219)
+++|....|+ ..+++..+|+.++|+|+.+.+.... ....+..+. ++....|-+..++.-+.+-
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e--~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdy 80 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDE--EARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDY 80 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-H--HHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCH--HHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeH
Confidence 8999887653 5789999999999999999887532 111222222 2333456676667665554
Q ss_pred HHH
Q 036627 70 RAM 72 (219)
Q Consensus 70 ~aI 72 (219)
-.+
T Consensus 81 e~f 83 (99)
T PF04908_consen 81 EDF 83 (99)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 166
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=88.16 E-value=0.71 Score=30.64 Aligned_cols=29 Identities=17% Similarity=0.555 Sum_probs=23.0
Q ss_pred EecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 8 YGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 8 y~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
|+.+.|.-|++++-.|+..||+|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78899999999999999999999988774
No 167
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=86.15 E-value=5.6 Score=24.32 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=36.1
Q ss_pred eEEEecCCChhHHHHHHHHHH-----cCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCee
Q 036627 5 IKLYGAPVSTCTARVMTCLHE-----KAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLT 65 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~-----~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 65 (219)
+.+|+.+.|+.|+...-.+.. .++.+-.+..+ ...++........+|+++ .+|..
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVD------ENPELAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECC------CChhHHHhcCcccccEEEEEECCEE
Confidence 567788899999988888877 55555444433 234455555566799985 45653
No 168
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.47 E-value=1.7 Score=32.62 Aligned_cols=65 Identities=11% Similarity=0.078 Sum_probs=49.8
Q ss_pred cCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHH
Q 036627 10 APVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYV 76 (219)
Q Consensus 10 ~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL 76 (219)
.|.|+|++++--+|...|++|+...|--+ +.-....+..+-..+.|=|-.+|..+.+..-|.+.+
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL~D--eelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVLTD--EELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEeccCC--HHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHh
Confidence 45799999999999999999988887532 112344556788999999988999888866655543
No 169
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=84.88 E-value=2.7 Score=36.56 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=40.6
Q ss_pred ceEEEecCCChhHHHHHHH----HHHc-CCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeee
Q 036627 4 LIKLYGAPVSTCTARVMTC----LHEK-AVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLF 67 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~----l~~~-gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~ 67 (219)
.+++|..+.||+|..+.-+ +.+. +|..+.+.+.. .++......-..||.++.||++++
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~------~~~~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH------FPDLKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc------cHHHHHhCCceecCEEEECCEEEE
Confidence 3788989999999876553 3444 67777776653 255555566888999998876543
No 170
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=84.25 E-value=5.8 Score=25.33 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=35.4
Q ss_pred eEEEecCCChhHHHHHHHHHH----cCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeee
Q 036627 5 IKLYGAPVSTCTARVMTCLHE----KAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTL 66 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i 66 (219)
+.+|+.++|+.|....-.+.. .+-.+....+|.. ..+++....--..+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d----~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID----EDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC----CCHHHHHHCCCeeccEEEEEECCeEE
Confidence 567788999999988766654 1112444455543 234444444456889885 566554
No 171
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=81.97 E-value=13 Score=25.09 Aligned_cols=62 Identities=8% Similarity=0.075 Sum_probs=33.9
Q ss_pred eEEEecCCChhHHHHHHHH----HHcCCccEEEEecCCCCCCCC-----cchhhhC----CCCCCCeEE--eCCeee
Q 036627 5 IKLYGAPVSTCTARVMTCL----HEKAVDFALVPVDLFSCEHKQ-----PPFLAKN----PFGQIPVLE--DGDLTL 66 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l----~~~gi~~~~~~~~~~~~~~~~-----~~~~~~~----p~~~vP~L~--~~~~~i 66 (219)
+..|+.++||+|+.+.=.| +..++++-.+.++-....... .++.... ....+|+++ .+|+.+
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 5567899999999855444 334455555555432110011 1333322 344599996 577554
No 172
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.50 E-value=1.5 Score=37.59 Aligned_cols=64 Identities=8% Similarity=0.008 Sum_probs=41.8
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeec
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFE 68 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~e 68 (219)
.+++|..+.||+|-.+.-+++...+....+..++-+ .+.-++.........||.+..++..+++
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id-~~~~~~~~~~~~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMID-GALFQDEVEALGIQGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE-chhCHHHHHhcCCcccCEEEECCcEEEe
Confidence 378999999999998887777665542222222221 1133555555667799999877766554
No 173
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=81.34 E-value=4.1 Score=26.34 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=32.8
Q ss_pred eEEEecCCChhHHHHHHHH--------HHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE
Q 036627 5 IKLYGAPVSTCTARVMTCL--------HEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE 60 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l--------~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 60 (219)
+..|+.++|+.|++..-.+ ...+ .+....++.........++.....-..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 5677889999999876332 2222 45666666543211124455555567799885
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=80.73 E-value=1.8 Score=37.23 Aligned_cols=72 Identities=11% Similarity=-0.003 Sum_probs=46.7
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCc---cEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeech----HHHHHHH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVD---FALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFES----RAMTAYV 76 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~---~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es----~aI~~yL 76 (219)
.+++|..+.||+|-.+.-+++..-+. .+...++- +..++.........||.+..++..+.+. ..+++.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~----~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~ 194 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG----ALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKL 194 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc----hhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 37899999999999887777665553 23333332 2345666666778999998777665542 2455555
Q ss_pred HHh
Q 036627 77 AEK 79 (219)
Q Consensus 77 ~~~ 79 (219)
.+.
T Consensus 195 ~~~ 197 (517)
T PRK15317 195 DTG 197 (517)
T ss_pred hcc
Confidence 543
No 175
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=80.28 E-value=12 Score=23.63 Aligned_cols=70 Identities=10% Similarity=0.157 Sum_probs=44.8
Q ss_pred eEEEecCCChhHHHHHHHHHH----cCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeee------echHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHE----KAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTL------FESRAM 72 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i------~es~aI 72 (219)
+..|+.++|+.|+...=.+.. .+-++....+|.. +.+.+.....-..+|++. .+|..+ .....|
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD----ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT----TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhh----ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 567788899999988744432 2215666666654 345666666788899996 566543 244466
Q ss_pred HHHHHH
Q 036627 73 TAYVAE 78 (219)
Q Consensus 73 ~~yL~~ 78 (219)
.++|.+
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666654
No 176
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=80.25 E-value=11 Score=25.11 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=39.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCC---ccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeeeech
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAV---DFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTLFES 69 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i~es 69 (219)
+..|+.++|+.|+.+.-.++...- ......+|.. +.++..+...-..+|++. .+|..+...
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~----~~~~l~~~~~v~~vPt~l~fk~G~~v~~~ 91 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE----KAPFLVEKLNIKVLPTVILFKNGKTVDRI 91 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc----cCHHHHHHCCCccCCEEEEEECCEEEEEE
Confidence 456778899999988766644221 1345556544 334555656777899996 678776543
No 177
>PHA03075 glutaredoxin-like protein; Provisional
Probab=78.47 E-value=4.9 Score=26.85 Aligned_cols=69 Identities=20% Similarity=0.364 Sum_probs=49.7
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEe-CCeeeechHHHHHHHHHh
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLED-GDLTLFESRAMTAYVAEK 79 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~i~es~aI~~yL~~~ 79 (219)
|-..+.|++-|.|+-|..+.-+|....=+|+..+|+..+-- +-.|.|-+|.. .+..+ -..+.+||+..
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSfF---------sK~g~v~~lg~d~~y~l--Inn~~~~lgne 69 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSFF---------SKDGQVKVLGMDKGYTL--INNFFKHLGNE 69 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeeee---------ccCCceEEEecccceeh--HHHHHHhhccc
Confidence 56679999999999999999999999999999999855311 22456666653 23222 23577777765
Q ss_pred c
Q 036627 80 F 80 (219)
Q Consensus 80 ~ 80 (219)
+
T Consensus 70 ~ 70 (123)
T PHA03075 70 Y 70 (123)
T ss_pred E
Confidence 4
No 178
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=78.33 E-value=7 Score=25.95 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=33.5
Q ss_pred eEEE-ecCCChhHHHHHHHHHHcCCc---cEEEEecCCCCCCCCcchhhhCCCCCCCeEE
Q 036627 5 IKLY-GAPVSTCTARVMTCLHEKAVD---FALVPVDLFSCEHKQPPFLAKNPFGQIPVLE 60 (219)
Q Consensus 5 ~~Ly-~~~~s~~~~~~~~~l~~~gi~---~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 60 (219)
+.++ +.++|++|+.++-+++...-. .+...++.. ..++......-..+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d----~~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD----EDKEKAEKYGVERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC----cCHHHHHHcCCCcCCEEE
Confidence 4455 567999999888777654432 233444433 345666666678899996
No 179
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=72.44 E-value=3.3 Score=31.28 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhcCcchH
Q 036627 144 SKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISSRPAFN 208 (219)
Q Consensus 144 ~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 208 (219)
...+..++..|.+.+|..|..++-+|+.++..+.-- .....+++..+|+..+.+...+.
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~e------p~s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGVE------PQSARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhcccC------cchhhhhHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999988665331 22345667777877776654443
No 180
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=71.64 E-value=19 Score=22.62 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=35.4
Q ss_pred eEEEecCCChhHHHHHHHHHHc----CCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeee
Q 036627 5 IKLYGAPVSTCTARVMTCLHEK----AVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTL 66 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i 66 (219)
+..|+.++|+.|+++.-.+... +-.+....++.. ..++...-.....+|++. .+|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE----ELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc----cCHHHHHhcCCccccEEEEEECCEEE
Confidence 5677888999999887766542 334555566543 233443333356699885 566543
No 181
>PTZ00051 thioredoxin; Provisional
Probab=71.42 E-value=22 Score=22.42 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=34.0
Q ss_pred eEEEecCCChhHHHHHHHHHHcCC---ccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeee
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAV---DFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTL 66 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i 66 (219)
+..|+.++|+.|++..-.++...- .+....++.. ..........-..+|+++ .+|..+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD----ELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc----chHHHHHHCCCceeeEEEEEeCCeEE
Confidence 557788899999987665554211 2333444433 234444445567889885 456543
No 182
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=68.99 E-value=13 Score=27.92 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=34.6
Q ss_pred eEEEecCCChhHHHHHHHHHHcCC---ccEEEEecCCCCCCCCcchhhhCCCCCCCeEEe
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAV---DFALVPVDLFSCEHKQPPFLAKNPFGQIPVLED 61 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~ 61 (219)
+.+|+.++||+|..+.-+++..-- ......+|.. ..++......-..+|+++.
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~i 192 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIVI 192 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEEE
Confidence 667899999999988877775432 1223334433 3355555566678999973
No 183
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=68.77 E-value=2.9 Score=28.22 Aligned_cols=26 Identities=35% Similarity=0.695 Sum_probs=13.6
Q ss_pred CCeEE--eCCeeeechHHHHHHHHHhcc
Q 036627 56 IPVLE--DGDLTLFESRAMTAYVAEKFK 81 (219)
Q Consensus 56 vP~L~--~~~~~i~es~aI~~yL~~~~~ 81 (219)
-|-|. .+|..++|+.||++||..-+.
T Consensus 36 ~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 36 GPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp S--EEE-S--S----HHHHHHHHTT--T
T ss_pred cceeeecCCceEEecccHHHHHHHhhcC
Confidence 47784 578999999999999999886
No 184
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=64.47 E-value=37 Score=22.22 Aligned_cols=57 Identities=5% Similarity=-0.004 Sum_probs=33.6
Q ss_pred eEEEecCCChhHHHHHHHH-----HHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCee
Q 036627 5 IKLYGAPVSTCTARVMTCL-----HEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLT 65 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l-----~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 65 (219)
+..|+.++|+.|+...=.+ ++.+..+....++.. ..+.......-..+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d----~~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG----HERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc----ccHHHHHHcCCccCCEEEEEECCEE
Confidence 5677888999997665333 222223444455543 224455555667899885 56644
No 185
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=62.07 E-value=13 Score=23.01 Aligned_cols=43 Identities=9% Similarity=0.247 Sum_probs=31.4
Q ss_pred CCeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHh
Q 036627 157 AKYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDIS 202 (219)
Q Consensus 157 ~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~ 202 (219)
-+|+. .+++ |+..++.+.++-........++--++..|.+++.
T Consensus 34 ~ky~t--~l~~-DvL~~~ll~~L~~~~r~~~k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 34 LKYFT--DLGY-DVLTFCLLERLSNPGRSRLKDDGTNISQWLQSLA 76 (77)
T ss_pred Hhhcc--hhhH-HHHHHHHHHHHhcccchhcCcCCCCHHHHHHHHh
Confidence 46663 2443 8999999999886554455666789999999875
No 186
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=61.94 E-value=29 Score=22.83 Aligned_cols=72 Identities=13% Similarity=0.010 Sum_probs=40.5
Q ss_pred EEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCC-cchhhh---CCCCCCCeEEeCCe-eeechHHHHHHHHHh
Q 036627 7 LYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQ-PPFLAK---NPFGQIPVLEDGDL-TLFESRAMTAYVAEK 79 (219)
Q Consensus 7 Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~-~~~~~~---~p~~~vP~L~~~~~-~i~es~aI~~yL~~~ 79 (219)
|++...||+|.+..-.+...+..=....++....+... .....+ +....+-+ ..+|. ...++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 46677799999888777777653333333332111000 011111 22333433 55665 899999998876665
No 187
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=59.58 E-value=50 Score=22.02 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=31.7
Q ss_pred eEEEecCCChhHHHHHHHHHH------cCCccEEEEecCCCCCCCCcchhhhCCCC-CCCeEE--e-CCeeee
Q 036627 5 IKLYGAPVSTCTARVMTCLHE------KAVDFALVPVDLFSCEHKQPPFLAKNPFG-QIPVLE--D-GDLTLF 67 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~------~gi~~~~~~~~~~~~~~~~~~~~~~~p~~-~vP~L~--~-~~~~i~ 67 (219)
+..|+.++|+.|++..-.+.. .+..|-.+.++ ... .+.....+..| .+|+++ + +|+.+.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd--~~~--~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLE--DDE--EPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEec--CCC--CchhhhcccCCCccceEEEECCCCCCch
Confidence 455678899999888555544 22234443333 211 11112345554 499995 3 565544
No 188
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=59.15 E-value=10 Score=25.11 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=22.1
Q ss_pred CCeE-EeCCeeeechHHHHHHHHHhcc
Q 036627 56 IPVL-EDGDLTLFESRAMTAYVAEKFK 81 (219)
Q Consensus 56 vP~L-~~~~~~i~es~aI~~yL~~~~~ 81 (219)
+|.+ ..+|.+++.|..|+++.++.+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 3555 4799999999999999999975
No 189
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=57.03 E-value=64 Score=22.46 Aligned_cols=74 Identities=11% Similarity=0.002 Sum_probs=40.6
Q ss_pred CceEEEecCCChhHHH-HHHHHHH-cCCccEEEEecCCCCCCCCcchhhhC---CCC-CCCeEEeCCeeeechHHHHHHH
Q 036627 3 TLIKLYGAPVSTCTAR-VMTCLHE-KAVDFALVPVDLFSCEHKQPPFLAKN---PFG-QIPVLEDGDLTLFESRAMTAYV 76 (219)
Q Consensus 3 ~~~~Ly~~~~s~~~~~-~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~---p~~-~vP~L~~~~~~i~es~aI~~yL 76 (219)
+.+++++.-.|+.|-. +++++.. .+=-+....+.-..+ ....... |.. ..=+++.+|..+.+|.|+++-+
T Consensus 8 p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g----~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~ 83 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPG----QALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRIL 83 (137)
T ss_pred CCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchh----hhHHhhcCCChhhhheeeEecCCceEeccHHHHHHH
Confidence 3467788888986655 4555444 222333333321111 1111112 211 1223457899999999999988
Q ss_pred HHhc
Q 036627 77 AEKF 80 (219)
Q Consensus 77 ~~~~ 80 (219)
...-
T Consensus 84 ~~L~ 87 (137)
T COG3011 84 RLLP 87 (137)
T ss_pred HHCC
Confidence 8775
No 190
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.47 E-value=13 Score=22.92 Aligned_cols=26 Identities=8% Similarity=0.321 Sum_probs=22.3
Q ss_pred ChhHHHHHHHHHHcCCccEEEEecCC
Q 036627 13 STCTARVMTCLHEKAVDFALVPVDLF 38 (219)
Q Consensus 13 s~~~~~~~~~l~~~gi~~~~~~~~~~ 38 (219)
-+|++|+.-+++..||+||..+-.-+
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PSGID 40 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPSGID 40 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecCCCc
Confidence 36999999999999999999976543
No 191
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=55.54 E-value=50 Score=24.69 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=35.0
Q ss_pred eEEEec---CCChhHHHHHHHHHHcC-----CccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCee
Q 036627 5 IKLYGA---PVSTCTARVMTCLHEKA-----VDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLT 65 (219)
Q Consensus 5 ~~Ly~~---~~s~~~~~~~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 65 (219)
+.+|+. ++||.|..+.=.++... +.+....++.. ..++.....--..+|++. .+|..
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~----~~~~l~~~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP----EDKEEAEKYGVERVPTTIILEEGKD 89 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc----ccHHHHHHcCCCccCEEEEEeCCee
Confidence 567777 78999998877776553 33333344322 234555556677899996 45533
No 192
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=55.09 E-value=25 Score=24.48 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=46.1
Q ss_pred ceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhh-hC-C--CCCCCeEEeCCeeeec---hHHHHHHH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLA-KN-P--FGQIPVLEDGDLTLFE---SRAMTAYV 76 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~-~~-p--~~~vP~L~~~~~~i~e---s~aI~~yL 76 (219)
.+.+|..|.|++|..=.-.|+.+|.....+..+-. ...++ ++ | ...==+.+.+|..+-+ -.+|.+.|
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~------~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll 100 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF------LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLL 100 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH------HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHH
Confidence 58899999999998888888888877766655321 11111 10 1 1122245667766544 45889999
Q ss_pred HHhcc
Q 036627 77 AEKFK 81 (219)
Q Consensus 77 ~~~~~ 81 (219)
++..+
T Consensus 101 ~~~pd 105 (149)
T COG3019 101 AEKPD 105 (149)
T ss_pred hCCCC
Confidence 88863
No 193
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=55.05 E-value=73 Score=22.53 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=34.8
Q ss_pred eEEEecCCChhHHHHHHHHHHc-----CCccEEEEecCCCCCCCCcchhhhCCC------CCCCeEE--eCCeeeec
Q 036627 5 IKLYGAPVSTCTARVMTCLHEK-----AVDFALVPVDLFSCEHKQPPFLAKNPF------GQIPVLE--DGDLTLFE 68 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~p~------~~vP~L~--~~~~~i~e 68 (219)
+..|+.++|+.|+...-.++.. +-.+....++... .++..+..-- ..+|++. .+|+.+..
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~----~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR----FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC----CHHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 6677888999998776544332 2235555666543 2333322222 3489996 67776653
No 194
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.83 E-value=9.8 Score=28.84 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=15.7
Q ss_pred ceEEEecCCChhHHHHHHHHHH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHE 25 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~ 25 (219)
.|.+|....||||....--|+.
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~k 28 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEK 28 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHH
Confidence 5778899999999754444443
No 195
>PRK09381 trxA thioredoxin; Provisional
Probab=54.39 E-value=56 Score=21.03 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=34.5
Q ss_pred eEEEecCCChhHHHHHHHHHH----cCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeee
Q 036627 5 IKLYGAPVSTCTARVMTCLHE----KAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTL 66 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i 66 (219)
+..++.++||.|+...-.++. .+-.+....++... .+.......-..+|+++ .+|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ----NPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC----ChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 456778889999877644432 22235556666543 23444444567899985 566554
No 196
>PHA02278 thioredoxin-like protein
Probab=53.56 E-value=60 Score=21.13 Aligned_cols=62 Identities=8% Similarity=0.014 Sum_probs=34.4
Q ss_pred eEEEecCCChhHHHHHHHHHHc----CCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeee
Q 036627 5 IKLYGAPVSTCTARVMTCLHEK----AVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTL 66 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i 66 (219)
+.-|+.++|+.|+.+.=.++.. +.......++........++.....--..+|++. .+|+.+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 4456788999998766444332 2222344444442111123454555667799996 577654
No 197
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=53.45 E-value=34 Score=21.94 Aligned_cols=57 Identities=5% Similarity=-0.133 Sum_probs=31.0
Q ss_pred eEEEecCCChhHHHHHHHHHHc----C-CccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeee
Q 036627 5 IKLYGAPVSTCTARVMTCLHEK----A-VDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTL 66 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~----g-i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i 66 (219)
+..|+.++|+.|+...=.+... + -......++.+ .++...-.--..+|++. .+|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 4567888999998776444332 1 11233334332 12334444466788875 566543
No 198
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=51.18 E-value=58 Score=20.28 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=35.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCC----ccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCee
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAV----DFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLT 65 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi----~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 65 (219)
+..|+.++|+.|++..-.++...- .+....++.. ..+.+.....-..+|+++ .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~----~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD----AQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc----CCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 556678889999887666544322 2444555544 334555555667899996 56654
No 199
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=50.77 E-value=38 Score=21.41 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=30.7
Q ss_pred eEEEecCCChhHHHHHHHH----HHcC--CccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCe
Q 036627 5 IKLYGAPVSTCTARVMTCL----HEKA--VDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDL 64 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l----~~~g--i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 64 (219)
+.+|+.++|+.|+...=.+ .... -.+....++... +....+.....-..+|+++ .+|.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--PEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--CccHHHHHhCCCccccEEEEEeCCC
Confidence 5677888999998774222 2211 123333444332 1234444444455789885 4444
No 200
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=49.58 E-value=75 Score=21.09 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=13.1
Q ss_pred eEEEecCCChhHHHHH
Q 036627 5 IKLYGAPVSTCTARVM 20 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~ 20 (219)
+..|+.++|++|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 5677888999999875
No 201
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=47.66 E-value=28 Score=24.70 Aligned_cols=33 Identities=24% Similarity=0.095 Sum_probs=28.9
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEE
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALV 33 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~ 33 (219)
|++++.|.+.++|+-+...+.+.+..|++|-..
T Consensus 1 ~~~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 1 MTQPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 777899999999999999999999999987543
No 202
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=47.26 E-value=85 Score=21.30 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=36.3
Q ss_pred eEEEecCCChhHHHHHH-------HHHHcCCccEEEEecCCCCCCCCcchhh----hCCCCCCCeEE---eCCeeeech
Q 036627 5 IKLYGAPVSTCTARVMT-------CLHEKAVDFALVPVDLFSCEHKQPPFLA----KNPFGQIPVLE---DGDLTLFES 69 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~-------~l~~~gi~~~~~~~~~~~~~~~~~~~~~----~~p~~~vP~L~---~~~~~i~es 69 (219)
+..++..+|++|++..- +....+-.|..+.+|..+.......+.. .+..+-+|+++ .+|..+..+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 34467788999987742 2222334677777776532111111111 22355688885 467887775
No 203
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=46.96 E-value=47 Score=23.93 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=26.7
Q ss_pred ceEEEecCCChhHHHHH----HHHHHc-CCccEEEEecCC
Q 036627 4 LIKLYGAPVSTCTARVM----TCLHEK-AVDFALVPVDLF 38 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~----~~l~~~-gi~~~~~~~~~~ 38 (219)
++++|+...||||.... -+++.. ++.++.+++.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 47899999999997554 444455 888888888766
No 204
>PRK10996 thioredoxin 2; Provisional
Probab=46.87 E-value=93 Score=21.38 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=35.6
Q ss_pred eEEEecCCChhHHHHHHHHHH----cCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeee
Q 036627 5 IKLYGAPVSTCTARVMTCLHE----KAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTL 66 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i 66 (219)
+..|+.++|+.|++..-.+.. .+-.+....++.. ..+++....--..+|+++ .+|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~----~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE----AERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC----CCHHHHHhcCCCccCEEEEEECCEEE
Confidence 567788899999876544433 2223445555544 335555555567899985 566644
No 205
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.13 E-value=27 Score=27.27 Aligned_cols=68 Identities=10% Similarity=-0.030 Sum_probs=46.8
Q ss_pred eEEEecCCC------hhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhC----CCCCCCeEEeCCeeeechHHHHH
Q 036627 5 IKLYGAPVS------TCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKN----PFGQIPVLEDGDLTLFESRAMTA 74 (219)
Q Consensus 5 ~~Ly~~~~s------~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~----p~~~vP~L~~~~~~i~es~aI~~ 74 (219)
+.+|..... =.|..||.+|+-.+|.|+++.|.+... ..++...+. -...+|.+-.+|.-|.+.-.|.+
T Consensus 133 VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~--fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~ 210 (281)
T KOG2824|consen 133 VVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSE--FREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVR 210 (281)
T ss_pred EEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHH--HHHHHHHHHhcccccCccCeEEEccEEeccHHHhhh
Confidence 566665532 257899999999999999999998742 223333322 24568866688888777666655
No 206
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=45.79 E-value=76 Score=20.06 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=33.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCc----cEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCe
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVD----FALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDL 64 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~----~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 64 (219)
+..|+.++|+.|+...-.++...-. +....++... .+...+...-..+|++. .+|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD----DRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc----cHHHHHHcCCCccCEEEEEcCCC
Confidence 5677888999998766555433222 3444555542 24444444567889885 4453
No 207
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=42.86 E-value=48 Score=24.60 Aligned_cols=36 Identities=31% Similarity=0.209 Sum_probs=26.6
Q ss_pred CceEEEecCCChhHHHH----HHHHHHcCCccEEEEecCC
Q 036627 3 TLIKLYGAPVSTCTARV----MTCLHEKAVDFALVPVDLF 38 (219)
Q Consensus 3 ~~~~Ly~~~~s~~~~~~----~~~l~~~gi~~~~~~~~~~ 38 (219)
++|.+|+...||||.-. .-++...+++++.+++.+.
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L~ 40 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFLG 40 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 36889999999998754 4455567788787787653
No 208
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=42.85 E-value=1e+02 Score=20.66 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=36.1
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCc----cEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeee
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVD----FALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTL 66 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~----~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i 66 (219)
+.-|+.++|+.|+.+.=.++..--. .....+|.+ ..++.....--..+|++. .+|+.+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD----~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID----EVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC----CCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 3447888999998776655443322 234455554 345666555666799995 567654
No 209
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=42.00 E-value=38 Score=24.67 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=22.6
Q ss_pred eEEEecCCChhHHHHH----HHHHHc----CCccEEEEecCC
Q 036627 5 IKLYGAPVSTCTARVM----TCLHEK----AVDFALVPVDLF 38 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~----~~l~~~----gi~~~~~~~~~~ 38 (219)
|.+|+...||||.... -++... ++.++.+++.+.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~ 42 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELN 42 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeC
Confidence 4689999999998444 444454 566666666544
No 210
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=41.04 E-value=91 Score=19.75 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=30.8
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCc----cEEEEecCCCCCCCCcchhhhCCCCCCCeEE
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVD----FALVPVDLFSCEHKQPPFLAKNPFGQIPVLE 60 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~----~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 60 (219)
+..|+.++|+.|++..=.++...-. +....++.. ..++......-..+|++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ----KYESLCQQANIRAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC----chHHHHHHcCCCcccEEE
Confidence 5677888999998765444332222 334455544 234454445567789885
No 211
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.55 E-value=1.6e+02 Score=24.28 Aligned_cols=104 Identities=16% Similarity=0.101 Sum_probs=63.5
Q ss_pred CeEEeCCeeeechHHHHHHHHHhcccCCCCCCCCCChHHHHHHHHHHHHHhhhcCcc-hHHHHH---HHHhcccCCCCCC
Q 036627 57 PVLEDGDLTLFESRAMTAYVAEKFKEAGTDLIRHHDLKEAALVKVWIEVESQQFHPA-IAPIVY---EYFVAPIQGKSPD 132 (219)
Q Consensus 57 P~L~~~~~~i~es~aI~~yL~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~ 132 (219)
+.+.+.+..+.|+.+|..-|...-. .++.+=+..++.++..|+.-....-.+. -..+|. ...+. ..+.+.+
T Consensus 99 ~~~~~~dQ~~VEaa~la~aL~~a~~----~lW~~L~~~~k~~l~~wL~~~~~~~~~~nNW~lF~v~v~~~L~-~~G~~~d 173 (361)
T PF10022_consen 99 GFIGDYDQRLVEAASLALALLRAPE----WLWDPLDEEEKENLVDWLKQIRGIKPPDNNWLLFRVMVEAFLK-KVGEEYD 173 (361)
T ss_pred CCcccchhhHhHHHHHHHHHHHCHH----HHHhhCCHHHHHHHHHHHHhcCcCCCccchhHHHHHHHHHHHH-HcCCCCc
Confidence 3444556899999999999988743 3553556778888888887554322221 111111 11111 1144555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhh
Q 036627 133 QGVIDANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHH 172 (219)
Q Consensus 133 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~ 172 (219)
+ ..+...++.+++...+.+|+..+.-.-.|...
T Consensus 174 ~-------~~i~~~l~~~e~~Y~GdGWY~DG~~~~~DYYn 206 (361)
T PF10022_consen 174 E-------ERIDYDLERIEEWYLGDGWYSDGPEFQFDYYN 206 (361)
T ss_pred H-------HHHHHHHHHHHHHhccCCccccCCccCCcchH
Confidence 5 45666777788887777888766666777766
No 212
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=40.21 E-value=52 Score=21.56 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=36.4
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCcc---EEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeeeechHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDF---ALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTLFESRAMT 73 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~---~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i~es~aI~ 73 (219)
+..|+.++|+.|+.+.-.++..--.| ....++... . ...+..--..+|++. .+|..+.......
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~----~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK----A-FLVNYLDIKVLPTLLVYKNGELIDNIVGFE 96 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh----h-HHHHhcCCCcCCEEEEEECCEEEEEEecHH
Confidence 45678889998987765554322222 334444331 1 444444556899996 6777665544333
No 213
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=39.73 E-value=92 Score=19.25 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=32.3
Q ss_pred eEEEecCCChhHHHHHHHHHHc----CCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCe
Q 036627 5 IKLYGAPVSTCTARVMTCLHEK----AVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDL 64 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 64 (219)
+..++.++|+.|+...-.++.. +-.+....++.. ..+.+....--..+|++. .+|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD----ENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC----CCHHHHHHcCCCcCCEEEEEeCCc
Confidence 4566777899898776554332 223455555543 234444444556799885 4554
No 214
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=38.50 E-value=49 Score=24.28 Aligned_cols=22 Identities=9% Similarity=0.233 Sum_probs=18.4
Q ss_pred ceEEEecCCChhHHHHHHHHHH
Q 036627 4 LIKLYGAPVSTCTARVMTCLHE 25 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~ 25 (219)
.+.+|..+.||+|++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 3678888999999999888764
No 215
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=38.20 E-value=87 Score=19.09 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=34.8
Q ss_pred ceEEEecCCChhHHHHH-----HHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE
Q 036627 4 LIKLYGAPVSTCTARVM-----TCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE 60 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~-----~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 60 (219)
.++||-...+|.|++.. ++=++.+-+|+...+|..+ .++.....----.|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~----~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK----QPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc----CHhHHhhCCEEEechhh
Confidence 47899888878776653 3333457789999999874 35554444445567665
No 216
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=37.65 E-value=57 Score=25.21 Aligned_cols=20 Identities=5% Similarity=0.167 Sum_probs=16.6
Q ss_pred eEEEecCCChhHHHHHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLH 24 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~ 24 (219)
+.+|..+.||||++..--+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 67888999999999876654
No 217
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=37.51 E-value=56 Score=19.93 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=17.7
Q ss_pred eEEEecCCChhHHHHHHHHHHc
Q 036627 5 IKLYGAPVSTCTARVMTCLHEK 26 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~ 26 (219)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678888999999888777664
No 218
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=35.62 E-value=82 Score=20.61 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=24.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEe
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPV 35 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~ 35 (219)
-.|......|...-++.+++++|||.+..+-
T Consensus 58 ~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d 88 (100)
T PF15608_consen 58 KVLVRDPDDPDLAHLLLLAEEKGVPVEVYPD 88 (100)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCcEEEeCC
Confidence 3455556678888999999999999888753
No 219
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=35.58 E-value=35 Score=22.09 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=20.3
Q ss_pred eEEEecCCChhHHHHHHHHHH-------cCCccEEEEecCC
Q 036627 5 IKLYGAPVSTCTARVMTCLHE-------KAVDFALVPVDLF 38 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~-------~gi~~~~~~~~~~ 38 (219)
+.+|+.+.||+|++..-.+.. ..-.+..+.++..
T Consensus 9 v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 667789999999988555542 1114556666654
No 220
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=34.78 E-value=50 Score=19.30 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=20.2
Q ss_pred EEEecCCChhHHHHHHHHHHcCCccEEEEec
Q 036627 6 KLYGAPVSTCTARVMTCLHEKAVDFALVPVD 36 (219)
Q Consensus 6 ~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~ 36 (219)
++|......-+..++-+|+..||++....-.
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 6777777778999999999999999887654
No 221
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=34.67 E-value=70 Score=24.38 Aligned_cols=23 Identities=4% Similarity=0.157 Sum_probs=18.3
Q ss_pred ceEEEecCCChhHHHHHHHHHHc
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEK 26 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~ 26 (219)
.+.+|..+.||||++..--+...
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHH
Confidence 37788999999999987666553
No 222
>PRK13947 shikimate kinase; Provisional
Probab=34.24 E-value=59 Score=22.97 Aligned_cols=32 Identities=19% Similarity=-0.006 Sum_probs=27.8
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEE
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALV 33 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~ 33 (219)
|. ++.|.+.++|+-+...+.+.+..|++|-..
T Consensus 1 m~-~I~l~G~~GsGKst~a~~La~~lg~~~id~ 32 (171)
T PRK13947 1 MK-NIVLIGFMGTGKTTVGKRVATTLSFGFIDT 32 (171)
T ss_pred CC-eEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 55 699999999999999999999999987443
No 223
>PRK09266 hypothetical protein; Provisional
Probab=33.88 E-value=42 Score=26.06 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=40.3
Q ss_pred HHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhcc
Q 036627 22 CLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKFK 81 (219)
Q Consensus 22 ~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~~ 81 (219)
.++..|+++++..+.+.+-.+-.+-|.--+-.|-+||-..|+..+.....|.+.|.+.+.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 456679999999887643221223333334468899998888777655678888877764
No 224
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=33.87 E-value=68 Score=23.32 Aligned_cols=35 Identities=11% Similarity=-0.107 Sum_probs=30.5
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEEEe
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALVPV 35 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~ 35 (219)
|..++.|.++.+++-+-.-+.++..+|.+|-+..-
T Consensus 1 ~~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 1 RNMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred CCccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 45679999999999999999999999999876643
No 225
>PRK13949 shikimate kinase; Provisional
Probab=31.86 E-value=69 Score=22.93 Aligned_cols=33 Identities=21% Similarity=0.048 Sum_probs=28.1
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEEE
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALVP 34 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~ 34 (219)
|. ++.|.+.++|+-+.-.+.+.+..|++|-...
T Consensus 1 m~-~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 1 MA-RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred Cc-EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 54 6999999999999999999999998765543
No 226
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=31.80 E-value=84 Score=16.44 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=19.8
Q ss_pred CCCCCeEEeCCeeeechHHHHHHHH
Q 036627 53 FGQIPVLEDGDLTLFESRAMTAYVA 77 (219)
Q Consensus 53 ~~~vP~L~~~~~~i~es~aI~~yL~ 77 (219)
.|.+|....++..++....|.+|+.
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 5778887667788888888888875
No 227
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=31.39 E-value=3e+02 Score=22.75 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCCCchhhhcchhHHHHHHHHhc
Q 036627 143 LSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTPCASIISERAHVKAWWEDISS 203 (219)
Q Consensus 143 ~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~~~~~~~~~p~l~~~~~~~~~ 203 (219)
....|+-|+..+.... .++..+--.++..-+..+....+.+-.+....+..|.++|..
T Consensus 264 Ysalfdsle~~~~~~~---~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~~~ 321 (374)
T PF03514_consen 264 YSALFDSLEACLPRDS---EERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRMRR 321 (374)
T ss_pred HHHHHHHHhhcCCCCC---HHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHHHh
Confidence 3344555555544422 344555555566666666665544445667788899988865
No 228
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.26 E-value=1e+02 Score=20.15 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=45.9
Q ss_pred ceEEEecCCChh------HHHHHHHHHHcCCccEEEEecCCCC------CCCCcchhhhCCCCCCCeEEeCC-----e--
Q 036627 4 LIKLYGAPVSTC------TARVMTCLHEKAVDFALVPVDLFSC------EHKQPPFLAKNPFGQIPVLEDGD-----L-- 64 (219)
Q Consensus 4 ~~~Ly~~~~s~~------~~~~~~~l~~~gi~~~~~~~~~~~~------~~~~~~~~~~~p~~~vP~L~~~~-----~-- 64 (219)
.+++|....++. .+.+-.+|....|+|+.+.+..... .+.+++.+..|.....|-++.++ .
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 588887665543 3457788999999999988764321 12334444455555667676322 1
Q ss_pred --eeechHHHHHHHHHh
Q 036627 65 --TLFESRAMTAYVAEK 79 (219)
Q Consensus 65 --~i~es~aI~~yL~~~ 79 (219)
.-.|...|.++|.-.
T Consensus 83 F~ea~E~ntl~eFL~la 99 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLGLA 99 (108)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 112667777777544
No 229
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=31.19 E-value=3.1e+02 Score=22.84 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=43.8
Q ss_pred eEEEecCCChhHHHHHHHHH-----H--cCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCee-------eec
Q 036627 5 IKLYGAPVSTCTARVMTCLH-----E--KAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLT-------LFE 68 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~-----~--~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~-------i~e 68 (219)
+.+|+.++|+.|.+..-.+. . .+-.+....++... ..+..+...-..+|++. .+|.. -.+
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~ 97 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE----EKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRD 97 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC----cHHHHHhCCCccccEEEEEeCCccceeEecCCCC
Confidence 66788899999987653222 2 23234555555442 24444445556688884 44443 135
Q ss_pred hHHHHHHHHHhcc
Q 036627 69 SRAMTAYVAEKFK 81 (219)
Q Consensus 69 s~aI~~yL~~~~~ 81 (219)
...|.+++.+..+
T Consensus 98 ~~~l~~~i~~~~~ 110 (462)
T TIGR01130 98 ADGIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHHHhcC
Confidence 6678888888765
No 230
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=31.14 E-value=1.3e+02 Score=21.84 Aligned_cols=65 Identities=12% Similarity=-0.003 Sum_probs=36.1
Q ss_pred eEEEecCCChhHHHHHHHHHHcCC---ccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeeeechHHHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAV---DFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTLFESRAMTA 74 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i~es~aI~~ 74 (219)
+..|+.++|+.|..+--.|...-- ......++... . ......+-..+|++. .+|..+..-....+
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~----~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~ 156 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA----T-GASDEFDTDALPALLVYKGGELIGNFVRVTE 156 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc----h-hhHHhCCCCCCCEEEEEECCEEEEEEechHH
Confidence 445677889988766433322211 23444454331 1 344445677899995 67877655444433
No 231
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=30.19 E-value=86 Score=18.38 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=27.5
Q ss_pred ccHHHhhhhhHHHHHhhCC-CchhhhcchhHHHHHHHHhcCcchHH
Q 036627 165 YSLADLHHLPYTYYFMKTP-CASIISERAHVKAWWEDISSRPAFNK 209 (219)
Q Consensus 165 ~t~AD~~~~~~l~~~~~~~-~~~~~~~~p~l~~~~~~~~~~p~~~~ 209 (219)
+|+.||.-...+-.+...+ +.-....+|.++.+.+.....|.+-+
T Consensus 1 M~i~DilQli~lcALIf~pLgyl~~r~~~r~r~~~r~~~~~pRYlK 46 (62)
T TIGR03493 1 MNISDILQLVLLCALIFFPLGYLARRSLRRIRTTLRLRLASPRYLK 46 (62)
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhcCCccccC
Confidence 4677877555555554444 22234457888888887776666543
No 232
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=30.12 E-value=1.4e+02 Score=18.65 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=31.5
Q ss_pred ceEEEecCCChhHHHHHHHHHHc-----CCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE
Q 036627 4 LIKLYGAPVSTCTARVMTCLHEK-----AVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE 60 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 60 (219)
.+..|+.++|+.|+...=.+... +..+....++.. ..+.......-..+|++.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~----~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT----QEPGLSGRFFVTALPTIY 76 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc----CCHhHHHHcCCcccCEEE
Confidence 36678888999998766444332 333444455543 234444445567788885
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=29.89 E-value=3.3e+02 Score=22.67 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 036627 138 ANLEKLSKVLDVYEAKLSSA 157 (219)
Q Consensus 138 ~~~~~~~~~l~~le~~L~~~ 157 (219)
...+++.+.|..+.+.|.+-
T Consensus 117 g~~~~l~~~L~~i~~rLd~~ 136 (374)
T PF13281_consen 117 GARKELAKELRRIRQRLDDP 136 (374)
T ss_pred hHHHHHHHHHHHHHHhhCCH
Confidence 34466777788888888763
No 234
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=29.43 E-value=93 Score=22.34 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=23.0
Q ss_pred eEEEecCCChhHHHH----HHHHHHcCCccEEEEecC
Q 036627 5 IKLYGAPVSTCTARV----MTCLHEKAVDFALVPVDL 37 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~----~~~l~~~gi~~~~~~~~~ 37 (219)
+.+|+...||||... +-+....++.++.+++.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~l 37 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPILL 37 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeeeH
Confidence 468889999998764 334445677777777654
No 235
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=29.30 E-value=78 Score=20.26 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=29.1
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCc---cEEEEecCCCCCCCCcchhhhCCCCCCCeEE
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVD---FALVPVDLFSCEHKQPPFLAKNPFGQIPVLE 60 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~---~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 60 (219)
+..|+.++|+.|++..=.++...-. +....++... ..+......--..+|++.
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~---~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESS---IKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCC---CCHHHHHhcCCeecCEEE
Confidence 5677888999998877555433222 2233343220 223333334456789885
No 236
>PTZ00102 disulphide isomerase; Provisional
Probab=29.26 E-value=3.5e+02 Score=22.82 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=44.1
Q ss_pred eEEEecCCChhHHHHHHHH-------HHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeee-----echH
Q 036627 5 IKLYGAPVSTCTARVMTCL-------HEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTL-----FESR 70 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l-------~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i-----~es~ 70 (219)
+..|+.++|+.|++..=.+ ...+-++....++... ..+......-..+|++. .+|..+ ....
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~----~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~ 128 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE----EMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTAD 128 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC----CHHHHHhcCCCcccEEEEEECCceEEecCCCCHH
Confidence 6678889999998764211 2223345555555442 23444444455689884 444332 3456
Q ss_pred HHHHHHHHhccc
Q 036627 71 AMTAYVAEKFKE 82 (219)
Q Consensus 71 aI~~yL~~~~~~ 82 (219)
.|.+|+.+..+.
T Consensus 129 ~l~~~l~~~~~~ 140 (477)
T PTZ00102 129 GIVSWIKKLTGP 140 (477)
T ss_pred HHHHHHHHhhCC
Confidence 789999988653
No 237
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=29.17 E-value=1.4e+02 Score=19.84 Aligned_cols=60 Identities=15% Similarity=0.019 Sum_probs=38.0
Q ss_pred eEEEecC--CChhHHHHHHHHHHcCCccE----EEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeeeec
Q 036627 5 IKLYGAP--VSTCTARVMTCLHEKAVDFA----LVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTLFE 68 (219)
Q Consensus 5 ~~Ly~~~--~s~~~~~~~~~l~~~gi~~~----~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i~e 68 (219)
+.+|+.. .||-|..+.-.++..--.|. ...++.. ..++.....--..+|+++ .+|+.+..
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid----~~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRA----DEQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECC----CCHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 4556666 39999988877766544443 2344433 335666666677899996 67876544
No 238
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=28.83 E-value=1.6e+02 Score=20.34 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=32.7
Q ss_pred eEEEecCCChhHHHHHHHHHHc----CCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--e-CCeee
Q 036627 5 IKLYGAPVSTCTARVMTCLHEK----AVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--D-GDLTL 66 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~-~~~~i 66 (219)
+..|+.++|+.|++..=.+... +-.+....++.... .........--..+|+++ + +|..+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~--~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP--KWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc--ccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 4566778899998776555432 22234455554321 122333444456789885 3 46544
No 239
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.49 E-value=1.3e+02 Score=17.99 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=25.9
Q ss_pred EEEecCCChhHHHHHHHHHHcCCccEEEEecC
Q 036627 6 KLYGAPVSTCTARVMTCLHEKAVDFALVPVDL 37 (219)
Q Consensus 6 ~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~ 37 (219)
.+..++....+.++.-+|...|++++.++++.
T Consensus 4 ~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 4 YLITFPSTHDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 34555656789999999999999999998863
No 240
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=28.37 E-value=1.5e+02 Score=18.40 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=31.5
Q ss_pred eEEEecCCChhHHHHHHHH-----HHcC--CccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCe
Q 036627 5 IKLYGAPVSTCTARVMTCL-----HEKA--VDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDL 64 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l-----~~~g--i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 64 (219)
+..|+.++|+.|+...=.+ ...+ -.+....++... .........-..+|++. .+|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----HRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----ChhhHhhcCCCcCCEEEEEeCCC
Confidence 5667888899998764333 2222 134555555442 23333334456789885 4554
No 241
>PRK15371 effector protein YopJ; Provisional
Probab=28.35 E-value=2.2e+02 Score=22.70 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCC
Q 036627 138 ANLEKLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTP 183 (219)
Q Consensus 138 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~ 183 (219)
...+++...++.||+.++++.|+ -+.++..|+-..+.|.......
T Consensus 23 ~~~~~L~~~i~~le~~~~~G~~~-~~~~~~~Di~~lp~lv~~~N~r 67 (287)
T PRK15371 23 ISNEELKNIITQLEDDIADGSWI-HKNYARTDLEVMPALVAQANNK 67 (287)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCC-CchhHHhhHHhhHHHHHHHhcc
Confidence 45667889999999999999888 4459999999999999887544
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.10 E-value=2.7e+02 Score=22.34 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=52.0
Q ss_pred eEEEecCCChhHHHHHHHHH----HcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCeeeec------hHHH
Q 036627 5 IKLYGAPVSTCTARVMTCLH----EKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDLTLFE------SRAM 72 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~----~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~i~e------s~aI 72 (219)
+.+|+.++|+-|....=.|+ +.+=.|....++.+ ..+....-..-..+|+.. .+|..+.+ -..|
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D----~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesql 122 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCD----AEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQL 122 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCC----cchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHH
Confidence 66788899998887665554 34446777778766 346666666677899885 67766533 2478
Q ss_pred HHHHHHhccc
Q 036627 73 TAYVAEKFKE 82 (219)
Q Consensus 73 ~~yL~~~~~~ 82 (219)
-++|++..+.
T Consensus 123 r~~ld~~~~~ 132 (304)
T COG3118 123 RQFLDKVLPA 132 (304)
T ss_pred HHHHHHhcCh
Confidence 8999988764
No 243
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=28.01 E-value=1.2e+02 Score=20.29 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcC
Q 036627 131 PDQGVIDANLEKLSKVLDVYEAKLSS 156 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~le~~L~~ 156 (219)
-+....-...++......-|++.|++
T Consensus 57 L~~~~R~~iirE~Daiv~DLeEVLa~ 82 (113)
T PF12290_consen 57 LEFSQRFQIIREADAIVYDLEEVLAS 82 (113)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667777788888888876
No 244
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=27.82 E-value=1.8e+02 Score=24.95 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=37.1
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCC-----eeeechH
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGD-----LTLFESR 70 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~-----~~i~es~ 70 (219)
+.++..-.|...+.+..+|+...++|+....+ -.|.+|+|.+++ .+|+|..
T Consensus 63 LVFvES~YS~lGq~Iv~ILes~Rf~y~~ei~~---------------~kg~lP~LT~~~kGRy~lII~ENl 118 (487)
T PF12062_consen 63 LVFVESQYSQLGQDIVAILESNRFKYKVEIAS---------------GKGDLPVLTDNDKGRYSLIIFENL 118 (487)
T ss_pred EEEEeeccchhhHHHHHHHHhceeeEEEEEcc---------------CCCCCCccccCCCCcEEEEEehhH
Confidence 34445556889999999999999999888764 235689998553 4566653
No 245
>PRK09301 circadian clock protein KaiB; Provisional
Probab=27.51 E-value=1.7e+02 Score=19.27 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=34.5
Q ss_pred eEEEecCCChhHHHHHHHH-----HHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE
Q 036627 5 IKLYGAPVSTCTARVMTCL-----HEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE 60 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l-----~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 60 (219)
++||....+|.|++..--+ ++.+=.|+...+|..+ .++.....----.|+|+
T Consensus 9 LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~----qPelAE~~~IvATPTLI 65 (103)
T PRK09301 9 LKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLK----NPQLAEEDKILATPTLA 65 (103)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc----CHhHHhHCCeEEecHHh
Confidence 7899888888777653322 2444469999998773 45555555555677775
No 246
>PRK14531 adenylate kinase; Provisional
Probab=27.38 E-value=89 Score=22.56 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=26.8
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCcc
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDF 30 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~ 30 (219)
|...+.+.+.|+|+-+-..+.+.+..|+++
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~~~g~~~ 30 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCAAHGLRH 30 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 777899999999999999999999998875
No 247
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=26.74 E-value=1.8e+02 Score=18.60 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=32.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcC------C----ccEEEEecCCCCCCCCcchhhhCCCCCCCeEE--eCCe
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKA------V----DFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE--DGDL 64 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~g------i----~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 64 (219)
+..|+.++|+.|++..-.+...- . .+....++.. ...+......-..+|++. .+|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d----~~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD----KESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC----CCHHHHHhCCCCcCCEEEEEeCCc
Confidence 56778889999988765553221 1 1334445443 234454445567889885 4554
No 248
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=25.09 E-value=1.7e+02 Score=19.39 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=30.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCcc----EEEEecCCCCCCCCcchh-hhCCCCCCCeEE
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDF----ALVPVDLFSCEHKQPPFL-AKNPFGQIPVLE 60 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~----~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~ 60 (219)
+..|+.++|+.|+...-.++...-.+ ....+|.. ...... ...--..+|++.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d----~~~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW----WPQGKCRKQKHFFYFPVIH 89 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC----CChHHHHHhcCCcccCEEE
Confidence 56788999999998877666654333 33445543 223333 223345688885
No 249
>PRK14368 Maf-like protein; Provisional
Probab=24.99 E-value=1.4e+02 Score=22.10 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=25.1
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCccEEEEecCCC
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDFALVPVDLFS 39 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~~~~~~ 39 (219)
|+.+.+|.--+.|| +| +-+|...|++|+.++.+.++
T Consensus 1 ~~~~~~lILAS~Sp--rR-~eLL~~~g~~f~v~~~~iDE 36 (193)
T PRK14368 1 MMANSPIVLASASP--RR-SELLASAGIEFDVVPADIPE 36 (193)
T ss_pred CCCCCcEEEeCCCH--HH-HHHHHHCCCCeEEEcCCCCC
Confidence 55566666666565 33 34478899999998887765
No 250
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=24.79 E-value=1.6e+02 Score=18.96 Aligned_cols=53 Identities=11% Similarity=0.153 Sum_probs=30.5
Q ss_pred eEEEecCCChhHHHHHHHHHH-----cCCccEEEEecCCCCCCCCcchh-hhCCCCCCCeEE
Q 036627 5 IKLYGAPVSTCTARVMTCLHE-----KAVDFALVPVDLFSCEHKQPPFL-AKNPFGQIPVLE 60 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~-----~gi~~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~ 60 (219)
+..|+.++||.|++..-.+.. .+..+....++... ....+. +...-..+|++.
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~---~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG---EQREFAKEELQLKSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc---cchhhHHhhcCCCcCCEEE
Confidence 677889999999877654433 23334444555432 112222 234566789885
No 251
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=24.65 E-value=97 Score=17.86 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=19.6
Q ss_pred HHHHHHHHhhcCCCeeccCCc-cHHHhh
Q 036627 145 KVLDVYEAKLSSAKYLAGDFY-SLADLH 171 (219)
Q Consensus 145 ~~l~~le~~L~~~~~l~G~~~-t~AD~~ 171 (219)
...+.|.+.+..+.|-.|+++ |.++++
T Consensus 4 ~i~~~l~~~I~~g~~~~g~~lps~~~la 31 (64)
T PF00392_consen 4 QIYDQLRQAILSGRLPPGDRLPSERELA 31 (64)
T ss_dssp HHHHHHHHHHHTTSS-TTSBE--HHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCEeCCHHHHH
Confidence 455667777888889999998 888875
No 252
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=24.64 E-value=74 Score=24.31 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=36.8
Q ss_pred HHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeee--echHHHHHHHHHh
Q 036627 22 CLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTL--FESRAMTAYVAEK 79 (219)
Q Consensus 22 ~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i--~es~aI~~yL~~~ 79 (219)
.++..|+++++..+...+-.+-.+-|.--+..|-+||-..++..+ .....|.+.|.+.
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~~ 255 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLREL 255 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHHh
Confidence 567789999999887653222233344334567889998777665 3445666666543
No 253
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=24.64 E-value=1e+02 Score=23.88 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=37.8
Q ss_pred HHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhc
Q 036627 22 CLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKF 80 (219)
Q Consensus 22 ~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~ 80 (219)
+++..|+++++..+...+-..-.+-|.--+-.|-+||...|+..+ ++..+.+.|.+.+
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id~~~~-~~g~~~~~l~~~~ 265 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGETSY-SSGTLTRYLQPLC 265 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEECCEEc-cchHHHHHHHHHH
Confidence 456789999999887653222333444334578889998777765 4457777776554
No 254
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=24.21 E-value=1.8e+02 Score=17.68 Aligned_cols=52 Identities=10% Similarity=0.073 Sum_probs=32.4
Q ss_pred eEEEecCCChhHHHHHHHHHHc------CCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE
Q 036627 5 IKLYGAPVSTCTARVMTCLHEK------AVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE 60 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~------gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 60 (219)
+.+|+.+.|+.|+...-.+... +-.+....++.. ....+.....-..+|++.
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT----ANNDLCSEYGVRGYPTIK 76 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc----chHHHHHhCCCCCCCEEE
Confidence 6678888899998876666442 234455555543 234454444556789885
No 255
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=23.92 E-value=79 Score=23.25 Aligned_cols=20 Identities=20% Similarity=0.556 Sum_probs=18.2
Q ss_pred CCeeeechHHHHHHHHHhcc
Q 036627 62 GDLTLFESRAMTAYVAEKFK 81 (219)
Q Consensus 62 ~~~~i~es~aI~~yL~~~~~ 81 (219)
.+..|+||..|-+|+.++++
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 45789999999999999998
No 256
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.49 E-value=1.5e+02 Score=18.15 Aligned_cols=36 Identities=17% Similarity=0.391 Sum_probs=21.1
Q ss_pred hhhhhHHHHHhhCC---CchhhhcchhHHHHHHHHhcCc
Q 036627 170 LHHLPYTYYFMKTP---CASIISERAHVKAWWEDISSRP 205 (219)
Q Consensus 170 ~~~~~~l~~~~~~~---~~~~~~~~p~l~~~~~~~~~~p 205 (219)
|-+...+.+.+..+ ++..+...|.|.+|.+-+..+.
T Consensus 32 iR~M~L~~~wR~~G~~i~F~~La~~PTl~aW~qLl~~~~ 70 (74)
T COG3433 32 IRMMALLERWRKRGADIDFAQLAANPTLAAWWQLLSTRS 70 (74)
T ss_pred HHHHHHHHHHHHcCCcccHHHHHhCccHHHHHHHHHhcc
Confidence 33444455555443 2223556788889988887653
No 257
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=23.49 E-value=5.1e+02 Score=22.91 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=30.8
Q ss_pred eEEEecCCChhHHHHHHH-H------HHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE
Q 036627 5 IKLYGAPVSTCTARVMTC-L------HEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE 60 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~-l------~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 60 (219)
+.-++.++|+.|+...-. + +..+ .+....+|..+.+....++.+......+|++.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTIL 539 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEE
Confidence 445678889999875322 1 1122 35666677654322233444444555689985
No 258
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=23.25 E-value=57 Score=25.55 Aligned_cols=59 Identities=12% Similarity=-0.033 Sum_probs=37.6
Q ss_pred HHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeee----echHHHHHHHHHhc
Q 036627 22 CLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTL----FESRAMTAYVAEKF 80 (219)
Q Consensus 22 ~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i----~es~aI~~yL~~~~ 80 (219)
+++..|++++...+.+.+-.+-.+-|.--+..|-+||-..++..+ .....|.+.|.+.+
T Consensus 211 ~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i~~~~~~~~~~~~gp~~~~l~~~~ 273 (279)
T cd01557 211 LARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRGKEPGEGEVGPVTKKLYDLL 273 (279)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEEccccccCCCCCCCHHHHHHHHHH
Confidence 567789999999887653222333444344567789998777665 34456666665544
No 259
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=22.84 E-value=72 Score=20.00 Aligned_cols=51 Identities=12% Similarity=0.060 Sum_probs=28.6
Q ss_pred eEEEecCCChhHHHHHHHHHHcCC------ccEEEEecCCCCCCCCcchhhhCCCCCCCeEE
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAV------DFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE 60 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi------~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 60 (219)
+.+|+.++|+.|++..-.+....- .+....++... .+-....+ ...+|++.
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~----~~~~~~~~-~~~~Pt~~ 78 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA----NDVPSEFV-VDGFPTIL 78 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc----hhhhhhcc-CCCCCEEE
Confidence 567888999999887555443322 24445555432 11111122 26889885
No 260
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=22.48 E-value=65 Score=19.40 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=21.8
Q ss_pred CCCCCeEEeCCeeeechHHHHHHHHHhc
Q 036627 53 FGQIPVLEDGDLTLFESRAMTAYVAEKF 80 (219)
Q Consensus 53 ~~~vP~L~~~~~~i~es~aI~~yL~~~~ 80 (219)
..+=||+..+| ..+|-.+|.+||.+..
T Consensus 13 lM~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 13 LMRDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp B-SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred HhhCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 45569999888 7799999999999943
No 261
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=22.02 E-value=1.9e+02 Score=18.88 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=25.1
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCccEEEE
Q 036627 5 IKLYGAPVSTCTARVMTCLHEKAVDFALVP 34 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~~gi~~~~~~ 34 (219)
+.|++.++++-+.-++.+++..|.++-...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~ 30 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEID 30 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccc
Confidence 468999999999999999999997764443
No 262
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=21.44 E-value=97 Score=16.85 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.3
Q ss_pred hhHHHHHHHHhcCcchHHHhhc
Q 036627 192 AHVKAWWEDISSRPAFNKVSEG 213 (219)
Q Consensus 192 p~l~~~~~~~~~~p~~~~~~~~ 213 (219)
..+.++++++.+.|.+++-+..
T Consensus 4 ~~l~~Fl~~~~~d~~l~~~l~~ 25 (49)
T PF07862_consen 4 ESLKAFLEKVKSDPELREQLKA 25 (49)
T ss_pred HHHHHHHHHHhcCHHHHHHHHh
Confidence 4578888888888888876665
No 263
>PF12728 HTH_17: Helix-turn-helix domain
Probab=20.73 E-value=1.6e+02 Score=15.88 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=22.2
Q ss_pred CCCCCCeEEeCCeeeechHHHHHHHHHh
Q 036627 52 PFGQIPVLEDGDLTLFESRAMTAYVAEK 79 (219)
Q Consensus 52 p~~~vP~L~~~~~~i~es~aI~~yL~~~ 79 (219)
-.|.+|....++...+.-.+|.+|+.++
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 23 RQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 3567888877778888889999998764
No 264
>PRK06217 hypothetical protein; Validated
Probab=20.44 E-value=1.4e+02 Score=21.56 Aligned_cols=29 Identities=21% Similarity=0.108 Sum_probs=25.3
Q ss_pred CCCceEEEecCCChhHHHHHHHHHHcCCcc
Q 036627 1 MTTLIKLYGAPVSTCTARVMTCLHEKAVDF 30 (219)
Q Consensus 1 M~~~~~Ly~~~~s~~~~~~~~~l~~~gi~~ 30 (219)
|+ ++.|.+.++|+-+-..+.+.+..|+++
T Consensus 1 ~~-~I~i~G~~GsGKSTla~~L~~~l~~~~ 29 (183)
T PRK06217 1 MM-RIHITGASGSGTTTLGAALAERLDIPH 29 (183)
T ss_pred Ce-EEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 54 688999999999999999999999875
No 265
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp. causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.
Probab=20.42 E-value=3e+02 Score=20.06 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhcCCCeeccCCccHHHhhhhhHHHHHhhCC
Q 036627 142 KLSKVLDVYEAKLSSAKYLAGDFYSLADLHHLPYTYYFMKTP 183 (219)
Q Consensus 142 ~~~~~l~~le~~L~~~~~l~G~~~t~AD~~~~~~l~~~~~~~ 183 (219)
.+....+.+++.++.++|+ .+.++.-|+...+.|-......
T Consensus 3 ~L~~y~~~~~~~~~~g~~~-~~~~~~~D~~~lp~lv~~~N~r 43 (177)
T PF03421_consen 3 SLKEYIERLEDDIKNGSWP-NESYAELDIKMLPALVAAENAR 43 (177)
T ss_pred HHHHHHHHHHHHHHhCCCC-CcchhhhhHHHHHHHHHHHhhc
Confidence 4667788899999999998 7779999999999998887544
No 266
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=20.42 E-value=1.1e+02 Score=20.62 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=27.9
Q ss_pred cCCChhHHHHHHHHH----HcCCccEEEEecCCC---CCCCCcchhh--hCCCCCCCeEE--eCCeeeechHHHHHHH
Q 036627 10 APVSTCTARVMTCLH----EKAVDFALVPVDLFS---CEHKQPPFLA--KNPFGQIPVLE--DGDLTLFESRAMTAYV 76 (219)
Q Consensus 10 ~~~s~~~~~~~~~l~----~~gi~~~~~~~~~~~---~~~~~~~~~~--~~p~~~vP~L~--~~~~~i~es~aI~~yL 76 (219)
.++||.|.++.-.++ ...-....+.+.... |.+..-.|+. .--...||+|. ..+..+.|....-+-|
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~~~~~l 112 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEECLNEDL 112 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHHH-HHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhhccHHH
Confidence 347899988774443 322233333333221 1111112222 12355699996 4456666655444333
No 267
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=20.25 E-value=2.4e+02 Score=17.81 Aligned_cols=52 Identities=10% Similarity=0.085 Sum_probs=29.6
Q ss_pred eEEEecCCChhHHHHHHHHHH----c---CCccEEEEecCCCCCCCCcchhhhCCCCCCCeEE
Q 036627 5 IKLYGAPVSTCTARVMTCLHE----K---AVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLE 60 (219)
Q Consensus 5 ~~Ly~~~~s~~~~~~~~~l~~----~---gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 60 (219)
+..|+.++||.|++..-.+.. . +..+....++... .+...+..--..+|++.
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA----YSSIASEFGVRGYPTIK 77 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc----CHhHHhhcCCccccEEE
Confidence 566788889999866544422 1 3334444455432 23444444456789985
No 268
>PRK13356 aminotransferase; Provisional
Probab=20.15 E-value=97 Score=24.34 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=36.6
Q ss_pred HHHHcCCccEEEEecCCCCCCCCcchhhhCCCCCCCeEEeCCeeeechHHHHHHHHHhc
Q 036627 22 CLHEKAVDFALVPVDLFSCEHKQPPFLAKNPFGQIPVLEDGDLTLFESRAMTAYVAEKF 80 (219)
Q Consensus 22 ~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~i~es~aI~~yL~~~~ 80 (219)
+++..|+++++..+.+.+-..-.+-|.--+..+-+||-..|+..+. ...|.+.|.+.+
T Consensus 221 ~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~id~~~~~-~g~~~~~l~~~~ 278 (286)
T PRK13356 221 LLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRFDDRSLQ-PGPVTRRARELY 278 (286)
T ss_pred HHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEEECCEEec-CChHHHHHHHHH
Confidence 5678899999998876432222344443445677899987777663 345555555443
No 269
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=20.08 E-value=2e+02 Score=20.60 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=22.7
Q ss_pred ceEEEecCCChhHHHHHHHH----HHc--CCccEEEEecCC
Q 036627 4 LIKLYGAPVSTCTARVMTCL----HEK--AVDFALVPVDLF 38 (219)
Q Consensus 4 ~~~Ly~~~~s~~~~~~~~~l----~~~--gi~~~~~~~~~~ 38 (219)
+|.+|..+.||||....-.+ +.. +++++.+...+.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L~ 42 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGLL 42 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEecccc
Confidence 37899999999997554333 343 566666554443
Done!