BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036628
(254 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356548831|ref|XP_003542802.1| PREDICTED: uncharacterized protein LOC100811151 [Glycine max]
Length = 414
Score = 277 bits (708), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 146/285 (51%), Positives = 178/285 (62%), Gaps = 41/285 (14%)
Query: 7 QKLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY--------- 56
++ Q+F YFVV+DFEATCDK K PHPQEIIEFPSVIVS +TGQ+ CFQ Y
Sbjct: 132 EQYQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSITGQLEACFQTYVRPTCNQLL 191
Query: 57 -----------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESEC 93
AL HD W + G+ +NFAVVTWS+WDC+VMLESEC
Sbjct: 192 SDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNSNFAVVTWSNWDCRVMLESEC 251
Query: 94 RFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARL 148
RFK I KP YFNRWINLR+PF + G V+CNLKEAVE L W GR HCGLDD+ N ARL
Sbjct: 252 RFKKIRKPPYFNRWINLRIPFREVFGAVKCNLKEAVEIAGLAWQGRAHCGLDDAKNTARL 311
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQRKCTFQHTSRDPAEVEEFR 208
LA++M RGFKFSIT S+ T D + W + + + C ++ V+
Sbjct: 312 LALLMHRGFKFSITNSIMWQ---TADRPLMWKQSPEQPIVFPHCPYKAKDITTPVVQYHP 368
Query: 209 YCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSAT 253
+CFCG KS + ++RKPGPK GS FFGCGN T +GA C+YF A+
Sbjct: 369 FCFCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWAS 413
>gi|449458085|ref|XP_004146778.1| PREDICTED: 3'-5' exoribonuclease 1-like [Cucumis sativus]
gi|449511572|ref|XP_004163993.1| PREDICTED: 3'-5' exoribonuclease 1-like [Cucumis sativus]
Length = 414
Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 149/284 (52%), Positives = 177/284 (62%), Gaps = 41/284 (14%)
Query: 8 KLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY---------- 56
+LQ+F YFVV+DFEATCDK + PHPQEIIEFPSVIV+ VTG + CFQ Y
Sbjct: 133 RLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVNSVTGHLEACFQTYVRPTCNQHLS 192
Query: 57 ----------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECR 94
AL HD W + G+ TNFAVVTWS+WDC+VMLESECR
Sbjct: 193 DFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKRGIKNTNFAVVTWSNWDCRVMLESECR 252
Query: 95 FKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLL 149
FK I KP YFNRWINL+VPF + G RCNLKEAVE L W GR HCGLDD+ N ARLL
Sbjct: 253 FKKIRKPPYFNRWINLKVPFREVFGGARCNLKEAVEMAGLDWEGRAHCGLDDAKNTARLL 312
Query: 150 AVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQRKCTFQHTSRDPAEVEEFRY 209
A+IM +GF+FSIT SL T D + W + + + + + V+ F Y
Sbjct: 313 ALIMHKGFRFSITNSLMWQ---TTDCPLQWKQSPETVTFPPQPPMKPKPMHIPIVQYFPY 369
Query: 210 CFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSAT 253
CFCG +S + ++RKPGPK GSFFFGCGN T KGA C+YF AT
Sbjct: 370 CFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWAT 413
>gi|359487133|ref|XP_003633521.1| PREDICTED: uncharacterized protein LOC100853630 [Vitis vinifera]
Length = 415
Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 153/289 (52%), Positives = 176/289 (60%), Gaps = 53/289 (18%)
Query: 9 LQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY----------- 56
LQDF YFVV+DFEATCDK K PHPQEIIEFPSVIVS VTGQ+ CFQ Y
Sbjct: 135 LQDFQYFVVIDFEATCDKGKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQILSD 194
Query: 57 ---------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
AL HD W + G+ TNFAVVTWS+WDC+VMLESECRF
Sbjct: 195 FCKDLTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLESECRF 254
Query: 96 KNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLA 150
K I KP YFNRWINL+VPF + G V CNLKEAVE L W GR HCGLDD+ N ARLLA
Sbjct: 255 KKIRKPPYFNRWINLKVPFREVFGGVWCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLA 314
Query: 151 VIMQRGFKFSITKSLT-----TPQDITQD-SVMTWNRHHQFLVRQRKCTFQHTSRDPAEV 204
+M RGFKFSIT SL P+ Q + ++ +H +R+ H
Sbjct: 315 FLMHRGFKFSITNSLMWQATDHPESWKQSPELSSFPEYHPQKLREPTIPLFHYH------ 368
Query: 205 EEFRYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSAT 253
YC+CG KS K ++RKPGPK GSFFFGCGN T +GA C+YF A+
Sbjct: 369 ---PYCYCGVKSSKGMVRKPGPKQGSFFFGCGNWTAARGARCHYFEWAS 414
>gi|296087843|emb|CBI35099.3| unnamed protein product [Vitis vinifera]
Length = 520
Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 153/289 (52%), Positives = 176/289 (60%), Gaps = 53/289 (18%)
Query: 9 LQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY----------- 56
LQDF YFVV+DFEATCDK K PHPQEIIEFPSVIVS VTGQ+ CFQ Y
Sbjct: 240 LQDFQYFVVIDFEATCDKGKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQILSD 299
Query: 57 ---------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
AL HD W + G+ TNFAVVTWS+WDC+VMLESECRF
Sbjct: 300 FCKDLTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLESECRF 359
Query: 96 KNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLA 150
K I KP YFNRWINL+VPF + G V CNLKEAVE L W GR HCGLDD+ N ARLLA
Sbjct: 360 KKIRKPPYFNRWINLKVPFREVFGGVWCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLA 419
Query: 151 VIMQRGFKFSITKSLT-----TPQDITQD-SVMTWNRHHQFLVRQRKCTFQHTSRDPAEV 204
+M RGFKFSIT SL P+ Q + ++ +H +R+ H
Sbjct: 420 FLMHRGFKFSITNSLMWQATDHPESWKQSPELSSFPEYHPQKLREPTIPLFHYH------ 473
Query: 205 EEFRYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSAT 253
YC+CG KS K ++RKPGPK GSFFFGCGN T +GA C+YF A+
Sbjct: 474 ---PYCYCGVKSSKGMVRKPGPKQGSFFFGCGNWTAARGARCHYFEWAS 519
>gi|356556782|ref|XP_003546701.1| PREDICTED: uncharacterized protein LOC100780340 [Glycine max]
Length = 414
Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 145/285 (50%), Positives = 175/285 (61%), Gaps = 41/285 (14%)
Query: 7 QKLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY--------- 56
++ Q+F YFVV+DFEATCDK K PHPQEIIEFPSVIVS +TGQ+ CFQ Y
Sbjct: 132 EQYQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSITGQLEACFQTYVRPTCNQLL 191
Query: 57 -----------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESEC 93
AL HD W + G+ +NFAVVTWS+WDC+VMLESEC
Sbjct: 192 TDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNSNFAVVTWSNWDCRVMLESEC 251
Query: 94 RFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARL 148
RFK I KP YFNRWINLR+PF + G VRCNLKEAVE L W GR HCGLDD+ N A L
Sbjct: 252 RFKKIRKPPYFNRWINLRIPFREVFGAVRCNLKEAVEIAGLAWQGRAHCGLDDAKNTAHL 311
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQRKCTFQHTSRDPAEVEEFR 208
LA++M RGFKFSIT S+ T D + W + + + ++ V+
Sbjct: 312 LALLMHRGFKFSITNSIMWQ---TADRPLMWKQSPEQPIVFPHSPYKAKDITIPVVQYHP 368
Query: 209 YCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSAT 253
+CFCG KS + ++RKP PK GS FFGCGN T +GACC YF A+
Sbjct: 369 FCFCGVKSSRGMVRKPCPKQGSLFFGCGNWTATRGACCRYFEWAS 413
>gi|357515343|ref|XP_003627960.1| ERI1 exoribonuclease [Medicago truncatula]
gi|355521982|gb|AET02436.1| ERI1 exoribonuclease [Medicago truncatula]
gi|388515457|gb|AFK45790.1| unknown [Medicago truncatula]
Length = 415
Score = 270 bits (689), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 151/292 (51%), Positives = 178/292 (60%), Gaps = 52/292 (17%)
Query: 7 QKLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY--------- 56
++ Q+F FVV+DFEATCDK K PHPQEIIEFPSVIVS VTGQ+ CFQ Y
Sbjct: 132 EQYQEFQNFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQHL 191
Query: 57 -----------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESEC 93
AL HD W + G+ NFAVVTWS+WDC+VMLESEC
Sbjct: 192 SDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNANFAVVTWSNWDCRVMLESEC 251
Query: 94 RFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARL 148
RFK I KP YFNRWINLRVPFS+ G VRCNLKEAVE L W GR HCGLDD+ N ARL
Sbjct: 252 RFKKIRKPPYFNRWINLRVPFSEVFGAVRCNLKEAVEIAGLAWQGRAHCGLDDAKNTARL 311
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQRKCTFQH---TSRD---PA 202
LA++M RGFKFSIT S+ T D + W + ++ + H +RD P
Sbjct: 312 LALLMHRGFKFSITNSIMWQ---TADRSLIWKQ-----SPEQPSAYPHFPFKARDMNTPI 363
Query: 203 EVEEFRYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSATA 254
C+CG KS + ++RKPGPK GS FFGCGN T +GA C+YF A+A
Sbjct: 364 IQYHHPCCYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWASA 415
>gi|225435848|ref|XP_002262814.1| PREDICTED: uncharacterized protein LOC100263388 [Vitis vinifera]
Length = 425
Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 155/309 (50%), Positives = 185/309 (59%), Gaps = 59/309 (19%)
Query: 3 PFLPQKL-----------QDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQIT 50
PFLP K+ Q+F YFVV+DFEATCDK K PHPQEIIEFPSV+V+ +TGQ+
Sbjct: 118 PFLPLKMLSQSHPQDFHFQEFQYFVVIDFEATCDKEKNPHPQEIIEFPSVLVNSMTGQLE 177
Query: 51 VCFQIY--------------------------------ALFLHDNWQQHMGVTPTNFAVV 78
FQIY AL +HD W + G+ TNFAVV
Sbjct: 178 DSFQIYVRPTCNHLLSDFCKELTGIQQIQVDNGVLLSEALLMHDRWLEQKGIKHTNFAVV 237
Query: 79 TWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHG 133
TWSDWDC+VMLESECRFK I KP YFNRWINL+VPF + G++RCNLKEAV+ L W G
Sbjct: 238 TWSDWDCRVMLESECRFKRIRKPPYFNRWINLKVPFHEVFGNIRCNLKEAVQRAGLLWEG 297
Query: 134 RVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQRKCT 193
R HCGLDD+ N ARLLA IM RGF+FSIT SL Q + S+ Q+ Q
Sbjct: 298 RAHCGLDDAKNTARLLAHIMHRGFRFSITNSLIW-QSTERPSIRQQFHDCQYGPIQHPHK 356
Query: 194 FQH-----TSRDPAEVEEFR----YCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGA 244
+H P VE + YCFCG +S ++++RKPGP GSFFFGCGN T +GA
Sbjct: 357 LKHPLGPFMRFHPIPVEPEKDLGTYCFCGVRSSRQMLRKPGPMHGSFFFGCGNWTAARGA 416
Query: 245 CCNYFHSAT 253
C+YF AT
Sbjct: 417 LCSYFEWAT 425
>gi|255578253|ref|XP_002529994.1| conserved hypothetical protein [Ricinus communis]
gi|223530517|gb|EEF32399.1| conserved hypothetical protein [Ricinus communis]
Length = 409
Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 149/287 (51%), Positives = 171/287 (59%), Gaps = 48/287 (16%)
Query: 9 LQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY----------- 56
QDF YFVV+DFEATCDK + PHPQEIIEFPSVIVS VTGQ+ CFQ Y
Sbjct: 130 FQDFQYFVVIDFEATCDKERNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQHLSD 189
Query: 57 ---------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
AL HD W + G+ T+FAVVTWS+WDC+VMLESECRF
Sbjct: 190 FCKDLTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNTSFAVVTWSNWDCRVMLESECRF 249
Query: 96 KNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLA 150
K I KP YFNRWINL+VPF + G VRCNLKEAVE L W GR HCGLDD+ N ARLLA
Sbjct: 250 KKIRKPPYFNRWINLKVPFREVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLA 309
Query: 151 VIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQRKCTFQHTSRDPAEVEEFRY- 209
+M++G KFSIT SL T D + + L +Q V F Y
Sbjct: 310 FLMRKGIKFSITNSLMWQ---TTDGSLALKQSPDRL----PSPYQPCKMKELHVPVFHYY 362
Query: 210 --CFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSATA 254
C+CG KS K ++RKPGPK GSFFFGCGN T +G C YF A+
Sbjct: 363 PICYCGVKSSKAMVRKPGPKQGSFFFGCGNWTAARGPRCQYFEWAST 409
>gi|224072947|ref|XP_002303940.1| predicted protein [Populus trichocarpa]
gi|222841372|gb|EEE78919.1| predicted protein [Populus trichocarpa]
Length = 399
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 176/293 (60%), Gaps = 60/293 (20%)
Query: 8 KLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY---------- 56
+LQDF YFVV+DFEATCDK + PHPQEIIEFPSVIVS VTGQ+ CFQ Y
Sbjct: 119 QLQDFQYFVVIDFEATCDKERNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQHLS 178
Query: 57 ----------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECR 94
AL HD W ++ G+ T+FAVVTWS+WDC+VMLESECR
Sbjct: 179 DFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTSFAVVTWSNWDCRVMLESECR 238
Query: 95 FKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVELG---WHGRVHCGLDDSMNIARLL 149
FK I KP YFNRWINL+VPF + G RC LKEAVE+ W GR HCGLDD+ N ARLL
Sbjct: 239 FKKIRKPPYFNRWINLKVPFCEIFGGARC-LKEAVEMAGLEWQGRAHCGLDDAKNTARLL 297
Query: 150 AVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFL-VRQRKCTFQHTSRDPAEVEEFR 208
A++M RG +FSIT SL WN L +Q + P +++E R
Sbjct: 298 ALLMHRGIRFSITNSL------------MWNTTDSSLPCKQSPENLSFSPHQPQKLKEMR 345
Query: 209 --------YCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSAT 253
+CFCG KS K ++RKPGPK GS FFGCGN T +GA C+YF A+
Sbjct: 346 IPVFPYHPFCFCGVKSSKGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWAS 398
>gi|118489625|gb|ABK96614.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 409
Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 175/292 (59%), Gaps = 58/292 (19%)
Query: 8 KLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY---------- 56
+ QDF YFVV+DFEATCDK + PHPQEIIEFPSVIVS VTGQ+ CFQ Y
Sbjct: 129 QFQDFQYFVVIDFEATCDKERNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLS 188
Query: 57 ----------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECR 94
AL HD W ++ G+ T FAVVTWS+WDC+VMLESECR
Sbjct: 189 DFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTKFAVVTWSNWDCRVMLESECR 248
Query: 95 FKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVELG---WHGRVHCGLDDSMNIARLL 149
FK I KP YFNRWINL+VPF + G RC LKEAVE+ W GR HCGLDD+ N ARLL
Sbjct: 249 FKKIRKPPYFNRWINLKVPFHEIFGGARC-LKEAVEMAGLHWQGRAHCGLDDAKNTARLL 307
Query: 150 AVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQRKCTFQHTSRDPAEVEEFR- 208
A++M RG +FSIT SL T DS ++ +Q P +++E
Sbjct: 308 ALLMHRGIRFSITNSLMW---HTTDSSLS--------CKQSTENLSLAPHQPHKLKEIHT 356
Query: 209 -------YCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSAT 253
+CFCG KS K ++RKPGPK GS FFGCGN T N+GA C+YF A+
Sbjct: 357 PVFPYHPFCFCGVKSSKGMVRKPGPKQGSLFFGCGNWTANRGARCHYFEWAS 408
>gi|224057242|ref|XP_002299190.1| predicted protein [Populus trichocarpa]
gi|222846448|gb|EEE83995.1| predicted protein [Populus trichocarpa]
Length = 409
Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 174/292 (59%), Gaps = 58/292 (19%)
Query: 8 KLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY---------- 56
+ QDF YFVV+DFEATCDK + PHPQEIIEFPSVIVS VTGQ+ CFQ Y
Sbjct: 129 QFQDFQYFVVIDFEATCDKERNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLS 188
Query: 57 ----------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECR 94
AL HD W ++ G+ T FAVVTWS+WDC+VMLESECR
Sbjct: 189 DFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTKFAVVTWSNWDCRVMLESECR 248
Query: 95 FKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVELG---WHGRVHCGLDDSMNIARLL 149
FK I KP YFNRWINL+VPF G RC LKEAVE+ W GR HCGLDD+ N ARLL
Sbjct: 249 FKKIRKPPYFNRWINLKVPFCDIFGGARC-LKEAVEMAGLHWQGRAHCGLDDAKNTARLL 307
Query: 150 AVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQRKCTFQHTSRDPAEVEEFR- 208
A++M+RG +FSIT SL T DS ++ +Q P +++E
Sbjct: 308 ALLMRRGIRFSITNSLMW---HTTDSSLS--------CKQSAENLSLAPHQPHKLKEIHI 356
Query: 209 -------YCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSAT 253
+CFCG KS K ++RKPGPK GS FFGCGN T +GA C+YF A+
Sbjct: 357 PVFPYHPFCFCGVKSSKGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWAS 408
>gi|242057047|ref|XP_002457669.1| hypothetical protein SORBIDRAFT_03g011390 [Sorghum bicolor]
gi|241929644|gb|EES02789.1| hypothetical protein SORBIDRAFT_03g011390 [Sorghum bicolor]
Length = 424
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/308 (47%), Positives = 177/308 (57%), Gaps = 58/308 (18%)
Query: 1 PNPFLPQ------KLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCF 53
P LPQ +LQ+F YFVV+DFEATCDK P PQEIIEFPSV+V+ TG++ CF
Sbjct: 120 PFKMLPQGHPHDAQLQEFQYFVVIDFEATCDKVNNPFPQEIIEFPSVLVNSATGKLEECF 179
Query: 54 QIY--------------------------------ALFLHDNWQQHMGVTPTNFAVVTWS 81
Q Y AL +HD W + G+ TNFA+VTWS
Sbjct: 180 QTYVRPTYHQFLTDFCKELTGIQQIQVDRGVPLGEALLMHDKWLEDKGIKNTNFAIVTWS 239
Query: 82 DWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVELG---WHGRVH 136
+WDC+ MLESECRFK I KP YFNRWINL+VPF + GDVRCNLKEAV+L W GR H
Sbjct: 240 NWDCRTMLESECRFKRIRKPPYFNRWINLKVPFQEVYGDVRCNLKEAVQLAGLTWEGRAH 299
Query: 137 CGLDDSMNIARLLAVIMQRGFKFSITKSLT---TPQ--------DITQDSVMTWNRHHQF 185
CGLDD+ N ARLLA++M RGFKFSIT SL PQ D + D V + +
Sbjct: 300 CGLDDARNTARLLALMMHRGFKFSITNSLVWQPAPQSTTCQLSPDRSPDPVQQQQKPKEM 359
Query: 186 LVRQRKCTFQHTSRDPAEVEEFRYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGAC 245
L + TS A + YC+CG S ++RKPGP G +FFGCGN T + A
Sbjct: 360 LGSPVQVNPYATS---AGKDRAMYCYCGVLSRWSVVRKPGPMQGRYFFGCGNWTATRRAI 416
Query: 246 CNYFHSAT 253
C YF A+
Sbjct: 417 CPYFAWAS 424
>gi|218187984|gb|EEC70411.1| hypothetical protein OsI_01406 [Oryza sativa Indica Group]
Length = 544
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 140/287 (48%), Positives = 170/287 (59%), Gaps = 45/287 (15%)
Query: 8 KLQDFDYFVVVDFEATCDKKI-PHPQEIIEFPSVIVSGVTGQITVCFQIY---------- 56
+LQ+F YFVV+DFEATCDK+ PHPQEIIEFPSV+V+ TGQ+ FQ Y
Sbjct: 254 QLQEFQYFVVIDFEATCDKENNPHPQEIIEFPSVLVNSATGQLEASFQTYVRPAYNQLLT 313
Query: 57 ----------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECR 94
AL +HD W + G+ NFAVVTWS+WDC+VMLESECR
Sbjct: 314 DFCKELTGIQQIQVDRGVPLSEALLMHDKWLEEKGIKHKNFAVVTWSNWDCRVMLESECR 373
Query: 95 FKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVELG---WHGRVHCGLDDSMNIARLL 149
K I KP YFNRWINL+VPF + G VRCNLKEAV+L W GR HCGLDD+ N ARLL
Sbjct: 374 LKRIRKPPYFNRWINLKVPFQEVFGGVRCNLKEAVQLSGLTWEGRAHCGLDDARNTARLL 433
Query: 150 AVIMQRGFKFSITKSL---TTPQDITQDSVMTW----NRHHQFLVRQRKCTFQHTSRDPA 202
A++M RGFKFSIT SL + PQ IT S N+ H + Q
Sbjct: 434 ALLMHRGFKFSITNSLVWQSAPQSITCQSSPAHSPYPNQSHHKPMEVMGSPVQVNPYAGI 493
Query: 203 EVEEFRYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYF 249
V++ YC CG S K+ +PGP G +F+GCGN T +GA C+Y+
Sbjct: 494 TVKKPMYCHCGVLSQIKVTYRPGPMHGRYFYGCGNWTSTRGANCDYW 540
>gi|296083880|emb|CBI24268.3| unnamed protein product [Vitis vinifera]
Length = 431
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 149/305 (48%), Positives = 180/305 (59%), Gaps = 72/305 (23%)
Query: 3 PFLPQKL-----------QDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQIT 50
PFLP K+ Q+F YFVV+DFEATCDK K PHPQEIIEFPSV+V+ +TGQ+
Sbjct: 145 PFLPLKMLSQSHPQDFHFQEFQYFVVIDFEATCDKEKNPHPQEIIEFPSVLVNSMTGQLE 204
Query: 51 VCFQIY--------------------------------ALFLHDNWQQHMGVTPTNFAVV 78
FQIY AL +HD W + G+ TNFAVV
Sbjct: 205 DSFQIYVRPTCNHLLSDFCKELTGIQQIQVDNGVLLSEALLMHDRWLEQKGIKHTNFAVV 264
Query: 79 TWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHG 133
TWSDWDC+VMLESECRFK I KP YFNRWINL+VPF + G++RCNLKEAV+ L W G
Sbjct: 265 TWSDWDCRVMLESECRFKRIRKPPYFNRWINLKVPFHEVFGNIRCNLKEAVQRAGLLWEG 324
Query: 134 RVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQR--K 191
R HCGLDD+ N ARLLA IM RGF+FSIT SL W + +RQ+
Sbjct: 325 RAHCGLDDAKNTARLLAHIMHRGFRFSITNSL------------IWQSTERPSIRQQFHD 372
Query: 192 CTF---QHTSRDPAEVEEFRYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNY 248
C + QH + + F +S ++++RKPGP GSFFFGCGN T +GA C+Y
Sbjct: 373 CQYGPIQHPHKLKHPLGPF------MRSSRQMLRKPGPMHGSFFFGCGNWTAARGALCSY 426
Query: 249 FHSAT 253
F AT
Sbjct: 427 FEWAT 431
>gi|115435988|ref|NP_001042752.1| Os01g0280000 [Oryza sativa Japonica Group]
gi|56783678|dbj|BAD81090.1| putative 3' exoribonuclease [Oryza sativa Japonica Group]
gi|56784201|dbj|BAD81586.1| putative 3' exoribonuclease [Oryza sativa Japonica Group]
gi|113532283|dbj|BAF04666.1| Os01g0280000 [Oryza sativa Japonica Group]
gi|215737104|dbj|BAG96033.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618206|gb|EEE54338.1| hypothetical protein OsJ_01314 [Oryza sativa Japonica Group]
Length = 411
Score = 256 bits (654), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 140/287 (48%), Positives = 170/287 (59%), Gaps = 45/287 (15%)
Query: 8 KLQDFDYFVVVDFEATCDKKI-PHPQEIIEFPSVIVSGVTGQITVCFQIY---------- 56
+LQ+F YFVV+DFEATCDK+ PHPQEIIEFPSV+V+ TGQ+ FQ Y
Sbjct: 121 QLQEFQYFVVIDFEATCDKENNPHPQEIIEFPSVLVNSATGQLEASFQTYVRPAYNQLLT 180
Query: 57 ----------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECR 94
AL +HD W + G+ NFAVVTWS+WDC+VMLESECR
Sbjct: 181 DFCKELTGIQQIQVDRGVPLSEALLMHDKWLEEKGIKHKNFAVVTWSNWDCRVMLESECR 240
Query: 95 FKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVELG---WHGRVHCGLDDSMNIARLL 149
K I KP YFNRWINL+VPF + G VRCNLKEAV+L W GR HCGLDD+ N ARLL
Sbjct: 241 LKRIRKPPYFNRWINLKVPFQEVFGGVRCNLKEAVQLSGLTWEGRAHCGLDDARNTARLL 300
Query: 150 AVIMQRGFKFSITKSL---TTPQDITQDSVMTW----NRHHQFLVRQRKCTFQHTSRDPA 202
A++M RGFKFSIT SL + PQ IT S N+ H + Q
Sbjct: 301 ALLMHRGFKFSITNSLVWQSAPQSITCQSSPAHSPYPNQSHHKPMEVMGSPVQVNPYAGI 360
Query: 203 EVEEFRYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYF 249
V++ YC CG S K+ +PGP G +F+GCGN T +GA C+Y+
Sbjct: 361 TVKKPMYCHCGVLSQIKVTYRPGPMHGRYFYGCGNWTSTRGANCDYW 407
>gi|357131416|ref|XP_003567334.1| PREDICTED: ERI1 exoribonuclease 2-like [Brachypodium distachyon]
Length = 425
Score = 256 bits (654), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 146/307 (47%), Positives = 180/307 (58%), Gaps = 54/307 (17%)
Query: 1 PNPFLPQ------KLQDFDYFVVVDFEATCDKKI-PHPQEIIEFPSVIVSGVTGQITVCF 53
P LPQ +LQ+F YFVV+DFEATCDK+ PHPQEIIEFPSV+V+ TGQ+ F
Sbjct: 119 PLKMLPQGYPHDAQLQEFQYFVVIDFEATCDKENNPHPQEIIEFPSVLVNSATGQLEASF 178
Query: 54 QIY--------------------------------ALFLHDNWQQHMGVTPTNFAVVTWS 81
Q Y AL +HD W + G+ NFAVVTWS
Sbjct: 179 QTYVRPAYHQNLTDFCKELTGIQQIQVDRGVPLSEALLMHDKWLEDKGIKHKNFAVVTWS 238
Query: 82 DWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVELG---WHGRVH 136
+WDC+VMLESECRFK+I KP YFNRWINL+VPF + G VRCNLK+AV+L W GR H
Sbjct: 239 NWDCRVMLESECRFKSIRKPPYFNRWINLKVPFQEMYGGVRCNLKDAVQLAGLTWEGRAH 298
Query: 137 CGLDDSMNIARLLAVIMQRGFKFSITKSLT---TPQDITQDSVMTWNRHHQFLVRQRKCT 193
CGLDD+ N ARLLA++M RGFKFSIT SL PQ IT + + L ++ K
Sbjct: 299 CGLDDARNTARLLALLMHRGFKFSITNSLVWQPAPQQITCQPLPDRSLEPTQLQQKAKEM 358
Query: 194 F--QHTSRDP-----AEVEEFRYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACC 246
H +P A ++ YC+CG S ++RKPGP G +F+GCGN T + A C
Sbjct: 359 LLGPHVQVNPYAGSTAGKDKPMYCYCGVLSRWSVVRKPGPMQGRYFYGCGNWTVTRRAIC 418
Query: 247 NYFHSAT 253
YF A+
Sbjct: 419 PYFAWAS 425
>gi|195629706|gb|ACG36494.1| histone mRNA exonuclease 1 [Zea mays]
Length = 437
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 147/320 (45%), Positives = 182/320 (56%), Gaps = 67/320 (20%)
Query: 1 PNPFLPQ------KLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCF 53
P LPQ +LQ+F YFVV+DFEATCDK P PQEIIEFPSV+V+ TG++ CF
Sbjct: 118 PFKMLPQGHPHDAQLQEFQYFVVIDFEATCDKVNNPFPQEIIEFPSVLVNSATGKLEECF 177
Query: 54 QIY--------------------------------ALFLHDNWQQHMGVTPTNFAVVTWS 81
Q Y AL +HD W + G+ TNFA+VTWS
Sbjct: 178 QTYVRPTYHQFLTDFCKELTGIQQIQVDRGVPLGEALLMHDKWLEDKGIKNTNFAIVTWS 237
Query: 82 DWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVELG---WHGRVH 136
+WDC++MLESECRFK I KP YFNRWINLRVPF + GDVRCNLKEAV+L W GR H
Sbjct: 238 NWDCRIMLESECRFKRIRKPPYFNRWINLRVPFQEVYGDVRCNLKEAVQLAGLTWEGRAH 297
Query: 137 CGLDDSMNIARLLAVIMQRGFKFSITKSL-----TTPQ----------DITQDSVMTWNR 181
CGLDD+ N ARLLA++M RGFKFSIT SL PQ D + D V+ +
Sbjct: 298 CGLDDARNTARLLALLMHRGFKFSITNSLVWQPAAAPQSTAATCHFSPDRSPDPVVVQLQ 357
Query: 182 HHQFLVRQRKCTFQHTSR-DPAEV-------EEFRYCFCGAKSFKKIIRKPGPKCGSFFF 233
H + ++ S+ +P+ + YC+CG S ++RKPGP G +FF
Sbjct: 358 HQHQQHKPKEALGSPASQVNPSYAATPAGGKDRAMYCYCGVLSRWSVVRKPGPMQGRYFF 417
Query: 234 GCGNLTPNKGACCNYFHSAT 253
GCGN T + A C YF A+
Sbjct: 418 GCGNWTATRRAICPYFAWAS 437
>gi|414877072|tpg|DAA54203.1| TPA: histone mRNA exonuclease 1 [Zea mays]
Length = 436
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/319 (46%), Positives = 182/319 (57%), Gaps = 66/319 (20%)
Query: 1 PNPFLPQ------KLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCF 53
P LPQ +LQ+F YFVV+DFEATCDK P PQEIIEFPSV+V+ TG++ CF
Sbjct: 118 PFKMLPQGHPHDAQLQEFQYFVVIDFEATCDKVNNPFPQEIIEFPSVLVNSATGKLEECF 177
Query: 54 QIY--------------------------------ALFLHDNWQQHMGVTPTNFAVVTWS 81
Q Y AL +HD W + G+ TNFA+VTWS
Sbjct: 178 QTYVRPTYHQFLTDFCKELTGIQQIQVDRGVPLGEALLMHDKWLEDKGIKNTNFAIVTWS 237
Query: 82 DWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVELG---WHGRVH 136
+WDC++MLESECRFK I KP YFNRWINLRVPF + GDVRCNLKEAV+L W GR H
Sbjct: 238 NWDCRIMLESECRFKRIRKPPYFNRWINLRVPFQEVYGDVRCNLKEAVQLAGLTWEGRAH 297
Query: 137 CGLDDSMNIARLLAVIMQRGFKFSITKSL-----TTPQ----------DITQDSVMTWNR 181
CGLDD+ N ARLLA++M RGFKFSIT SL PQ D + D V+ +
Sbjct: 298 CGLDDARNTARLLALLMHRGFKFSITNSLVWQPAAAPQSTAATCHFSPDRSPDPVVVQLQ 357
Query: 182 HHQFLVRQRKCTFQHTSR-DPAEV------EEFRYCFCGAKSFKKIIRKPGPKCGSFFFG 234
H Q + ++ S +P+ + YC+CG S ++RKPGP G +FFG
Sbjct: 358 HQQQQHKPKEALGSPASLVNPSYATPAGGKDRAMYCYCGVLSRWSVVRKPGPMQGRYFFG 417
Query: 235 CGNLTPNKGACCNYFHSAT 253
CGN T + A C YF A+
Sbjct: 418 CGNWTATRRAICPYFAWAS 436
>gi|414877071|tpg|DAA54202.1| TPA: hypothetical protein ZEAMMB73_728544 [Zea mays]
Length = 433
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/319 (46%), Positives = 182/319 (57%), Gaps = 66/319 (20%)
Query: 1 PNPFLPQ------KLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCF 53
P LPQ +LQ+F YFVV+DFEATCDK P PQEIIEFPSV+V+ TG++ CF
Sbjct: 115 PFKMLPQGHPHDAQLQEFQYFVVIDFEATCDKVNNPFPQEIIEFPSVLVNSATGKLEECF 174
Query: 54 QIY--------------------------------ALFLHDNWQQHMGVTPTNFAVVTWS 81
Q Y AL +HD W + G+ TNFA+VTWS
Sbjct: 175 QTYVRPTYHQFLTDFCKELTGIQQIQVDRGVPLGEALLMHDKWLEDKGIKNTNFAIVTWS 234
Query: 82 DWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVELG---WHGRVH 136
+WDC++MLESECRFK I KP YFNRWINLRVPF + GDVRCNLKEAV+L W GR H
Sbjct: 235 NWDCRIMLESECRFKRIRKPPYFNRWINLRVPFQEVYGDVRCNLKEAVQLAGLTWEGRAH 294
Query: 137 CGLDDSMNIARLLAVIMQRGFKFSITKSL-----TTPQ----------DITQDSVMTWNR 181
CGLDD+ N ARLLA++M RGFKFSIT SL PQ D + D V+ +
Sbjct: 295 CGLDDARNTARLLALLMHRGFKFSITNSLVWQPAAAPQSTAATCHFSPDRSPDPVVVQLQ 354
Query: 182 HHQFLVRQRKCTFQHTSR-DPAEV------EEFRYCFCGAKSFKKIIRKPGPKCGSFFFG 234
H Q + ++ S +P+ + YC+CG S ++RKPGP G +FFG
Sbjct: 355 HQQQQHKPKEALGSPASLVNPSYATPAGGKDRAMYCYCGVLSRWSVVRKPGPMQGRYFFG 414
Query: 235 CGNLTPNKGACCNYFHSAT 253
CGN T + A C YF A+
Sbjct: 415 CGNWTATRRAICPYFAWAS 433
>gi|226492270|ref|NP_001146741.1| uncharacterized protein LOC100280343 [Zea mays]
gi|219888569|gb|ACL54659.1| unknown [Zea mays]
Length = 427
Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 148/319 (46%), Positives = 182/319 (57%), Gaps = 66/319 (20%)
Query: 1 PNPFLPQ------KLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCF 53
P LPQ +LQ+F YFVV+DFEATCDK P PQEIIEFPSV+V+ TG++ CF
Sbjct: 109 PFKMLPQGHPHDAQLQEFQYFVVIDFEATCDKVNNPFPQEIIEFPSVLVNSATGKLEECF 168
Query: 54 QIY--------------------------------ALFLHDNWQQHMGVTPTNFAVVTWS 81
Q Y AL +HD W + G+ TNFA+VTWS
Sbjct: 169 QTYVRPTYHQFLTDFCKELTGIQQIQVDRGVPLGEALLMHDKWLEDKGIKNTNFAIVTWS 228
Query: 82 DWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVELG---WHGRVH 136
+WDC++MLESECRFK I KP YFNRWINLRVPF + GDVRCNLKEAV+L W GR H
Sbjct: 229 NWDCRIMLESECRFKRIRKPPYFNRWINLRVPFQEVYGDVRCNLKEAVQLAGLTWEGRAH 288
Query: 137 CGLDDSMNIARLLAVIMQRGFKFSITKSL-----TTPQ----------DITQDSVMTWNR 181
CGLDD+ N ARLLA++M RGFKFSIT SL PQ D + D V+ +
Sbjct: 289 CGLDDARNTARLLALLMHRGFKFSITNSLVWQPAAAPQSTAATCHFSPDRSPDPVVVQLQ 348
Query: 182 HHQFLVRQRKCTFQHTSR-DPAEV------EEFRYCFCGAKSFKKIIRKPGPKCGSFFFG 234
H Q + ++ S +P+ + YC+CG S ++RKPGP G +FFG
Sbjct: 349 HQQQQHKPKEALGSPASLVNPSYATPAGGKDRAMYCYCGVLSRWSVVRKPGPMQGRYFFG 408
Query: 235 CGNLTPNKGACCNYFHSAT 253
CGN T + A C YF A+
Sbjct: 409 CGNWTATRRAICPYFAWAS 427
>gi|294461520|gb|ADE76321.1| unknown [Picea sitchensis]
Length = 436
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/297 (45%), Positives = 165/297 (55%), Gaps = 57/297 (19%)
Query: 8 KLQDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQITVCFQIY---------- 56
+LQDF YFVV+DFEATCD PQEIIEFPSV+V+G+TG++ F Y
Sbjct: 137 QLQDFQYFVVIDFEATCDMGTRLSPQEIIEFPSVLVNGMTGRLEGHFHTYIKPVYHPVLT 196
Query: 57 ----------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECR 94
AL +HDNW + GV TNFAVVTWSDWDC+VMLESEC
Sbjct: 197 DFCKELTGIQQSQVIGGVSLSEALLMHDNWLEERGVKNTNFAVVTWSDWDCKVMLESECN 256
Query: 95 FKNIPKPSYFNRWINLRVPF--SKGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLL 149
K I KP+YFNRWINL++PF S G +RCNLK AVE L W GR H GLDD+ N ARLL
Sbjct: 257 LKGIRKPNYFNRWINLKLPFYDSFGQLRCNLKGAVEFAGLTWEGRAHSGLDDAKNTARLL 316
Query: 150 AVIMQRGFKFSITKSL--------TTPQDITQDSVMTWNRHHQFLVRQRKCTFQHTSRDP 201
+M+RG K +IT S+ T P + + +R LV Q + Q P
Sbjct: 317 LDLMRRGIKLTITNSMLYASANGSTLPLPMQEPPKTGVSRS---LVSQ--GSGQSLDSGP 371
Query: 202 ------AEVEEFRYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSA 252
E + CFCG S K +I+KPGP+ G FFGCG + +GA C +F A
Sbjct: 372 WLNTTDVEKDTGALCFCGVPSNKCVIKKPGPRHGKTFFGCGKWSITRGAACEFFEWA 428
>gi|215692771|dbj|BAG88201.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 206
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 127/202 (62%), Gaps = 12/202 (5%)
Query: 60 LHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--G 117
+HD W + G+ NFAVVTWS+WDC+VMLESECR K I KP YFNRWINL+VPF + G
Sbjct: 1 MHDKWLEEKGIKHKNFAVVTWSNWDCRVMLESECRLKRIRKPPYFNRWINLKVPFQEVFG 60
Query: 118 DVRCNLKEAVELG---WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL---TTPQDI 171
VRCNLKEAV+L W GR HCGLDD+ N ARLLA++M RGFKFSIT SL + PQ I
Sbjct: 61 GVRCNLKEAVQLSGLTWEGRAHCGLDDARNTARLLALLMHRGFKFSITNSLVWQSAPQSI 120
Query: 172 TQDSVMTW----NRHHQFLVRQRKCTFQHTSRDPAEVEEFRYCFCGAKSFKKIIRKPGPK 227
T S N+ H + Q V++ YC CG S K+ +PGP
Sbjct: 121 TCQSSPAHSPYPNQSHHKPMEVMGSPVQVNPYAGITVKKPMYCHCGVLSQIKVTYRPGPM 180
Query: 228 CGSFFFGCGNLTPNKGACCNYF 249
G +F+GCGN T +GA C+Y+
Sbjct: 181 HGRYFYGCGNWTSTRGANCDYW 202
>gi|238015266|gb|ACR38668.1| unknown [Zea mays]
Length = 221
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 128/221 (57%), Gaps = 27/221 (12%)
Query: 60 LHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--G 117
+HD W + G+ TNFA+VTWS+WDC++MLESECRFK I KP YFNRWINLRVPF + G
Sbjct: 1 MHDKWLEDKGIKNTNFAIVTWSNWDCRIMLESECRFKRIRKPPYFNRWINLRVPFQEVYG 60
Query: 118 DVRCNLKEAVELG---WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLT-TPQDITQ 173
DVRCNLKEAV+L W GR HCGLDD+ N ARLLA++M RGFKFSIT SL P Q
Sbjct: 61 DVRCNLKEAVQLAGLTWEGRAHCGLDDARNTARLLALLMHRGFKFSITNSLVWQPAAAPQ 120
Query: 174 DSVMTWN---------------------RHHQFLVRQRKCTFQHTSRDPAEVEEFRYCFC 212
+ T + + + L + + YC+C
Sbjct: 121 STAATCHFSPDRSPDPVVVQLQHQQQQHKPKEALGSPASLVNPSYATPAGGKDRAMYCYC 180
Query: 213 GAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSAT 253
G S ++RKPGP G +FFGCGN T + A C YF A+
Sbjct: 181 GVLSRWSVVRKPGPMQGRYFFGCGNWTATRRAICPYFAWAS 221
>gi|357122926|ref|XP_003563164.1| PREDICTED: ERI1 exoribonuclease 2-like [Brachypodium distachyon]
Length = 310
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/284 (41%), Positives = 150/284 (52%), Gaps = 46/284 (16%)
Query: 8 KLQDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQITVCFQIY---------- 56
++Q+FD FVVVDFEA C+K +PQEIIEFPSV+V G TG++ F+ Y
Sbjct: 23 QVQEFDCFVVVDFEAICEKDARIYPQEIIEFPSVLVDGATGRLASAFRRYVRPRHHPVLT 82
Query: 57 ----------------------ALFLHDNW-QQHMGVTPTN--FAVVTWSDWDCQVMLES 91
AL LHD W ++ M T FAVVTW DWDC+ ML+
Sbjct: 83 DFCRELTGIRQEDVDGGVDLAEALRLHDAWLEETMLATKKGGRFAVVTWGDWDCRSMLDK 142
Query: 92 ECRFKNIPKPSYFNRWINLRVPFSK---GDVRCNLKEAVE---LGWHGRVHCGLDDSMNI 145
ECRFK + KP+YF+RWINLRVPF G R L+EAV L W GR+HCGLDD++N
Sbjct: 143 ECRFKGLTKPAYFDRWINLRVPFQAAFGGSGRVTLQEAVRAAGLEWEGRLHCGLDDAINT 202
Query: 146 ARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQRKCTFQHTSRDPAEVE 205
LL +MQ+G + +IT SL P Q V+ Q R H A
Sbjct: 203 EYLLVEVMQQGVQLAITGSLALPPPSKQQVVLPPPPQPQLQEILRPQPRLHNGGAVA--- 259
Query: 206 EFRYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYF 249
C+CG + + ++ GP G +F+GCGNLTP C+YF
Sbjct: 260 -VGCCYCGLLARRGVVVASGPMQGKYFYGCGNLTPAMRPMCHYF 302
>gi|302755050|ref|XP_002960949.1| hypothetical protein SELMODRAFT_73963 [Selaginella moellendorffii]
gi|300171888|gb|EFJ38488.1| hypothetical protein SELMODRAFT_73963 [Selaginella moellendorffii]
Length = 397
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 149/287 (51%), Gaps = 45/287 (15%)
Query: 5 LPQKL--QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------ 56
+ QKL Q FDYFVV+DFEATCD + PQEIIEFPSV+V+ + + FQ Y
Sbjct: 100 IDQKLVEQAFDYFVVIDFEATCDSTVFFPQEIIEFPSVLVAVHSLSVEDSFQTYVKPTFN 159
Query: 57 --------------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLE 90
AL HD W + GV F V+TW+DWDC+VML+
Sbjct: 160 PQLTDFCKRLTGIEQTQVDNGMALAEALVKHDKWLEDKGVKSKRFGVITWTDWDCKVMLD 219
Query: 91 SECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHGRVHCGLDDSMNI 145
ECR K + KPSYFN+WINL+ F + GD + NLK+AV+ L W GR HCGLDD+ N
Sbjct: 220 FECRLKGLTKPSYFNKWINLKSCFQEKFGD-KFNLKKAVQHAGLQWQGREHCGLDDAKNT 278
Query: 146 ARLLAVIMQRGFKFSITKSLTTPQ-DITQDSVMTWNRHHQFL-VRQRKCTFQHTSRDPAE 203
A L +++RG + T+ ++ + IT S + + L R TS
Sbjct: 279 ASLAMELVRRGMQIGFTQHQSSRKPAITNISSEFMPKLKKILEALPRSSDIDETS---IT 335
Query: 204 VEEFRYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFH 250
V C+CG K +++RK GP G FF CGN T +G C YF
Sbjct: 336 VGADNLCYCGVKCKTRLVRKAGPNQGKFFLSCGNWTLTEGGKCTYFE 382
>gi|302767276|ref|XP_002967058.1| hypothetical protein SELMODRAFT_87763 [Selaginella moellendorffii]
gi|300165049|gb|EFJ31657.1| hypothetical protein SELMODRAFT_87763 [Selaginella moellendorffii]
Length = 397
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/280 (39%), Positives = 145/280 (51%), Gaps = 43/280 (15%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
Q FDYFVV+DFEATCD + PQEIIEFPSV+V+ + + FQ Y
Sbjct: 107 QAFDYFVVIDFEATCDSTVFFPQEIIEFPSVLVAVHSLSVEDSFQTYVKPTFNPQLTDFC 166
Query: 57 -------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKN 97
AL HD W + GV F V+TW+DWDC+VML+ ECR K
Sbjct: 167 KRLTGIEQTQVDNGMALAEALVKHDKWLEDKGVKSKRFGVITWTDWDCKVMLDFECRLKG 226
Query: 98 IPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVI 152
+ KPSYFN+WINL+ F + GD + NLK+AV+ L W GR HCGLDD+ N A L +
Sbjct: 227 LTKPSYFNKWINLKSCFQEKFGD-KFNLKKAVQHAGLQWQGREHCGLDDAKNTASLAMEL 285
Query: 153 MQRGFKFSITKSLTTPQ-DITQDSVMTWNRHHQFL-VRQRKCTFQHTSRDPAEVEEFRYC 210
++RG + T+ ++ + IT S + + L R TS V C
Sbjct: 286 VKRGMQIGFTQHQSSRKPAITNISSEFMPKLKKILEALPRSSDIDETS---ITVGADNLC 342
Query: 211 FCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFH 250
+CG K +++RK GP G FF CGN T +G C YF
Sbjct: 343 YCGVKCKTRLVRKAGPNQGKFFLSCGNWTLTEGGKCTYFE 382
>gi|242087831|ref|XP_002439748.1| hypothetical protein SORBIDRAFT_09g019420 [Sorghum bicolor]
gi|241945033|gb|EES18178.1| hypothetical protein SORBIDRAFT_09g019420 [Sorghum bicolor]
Length = 283
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 143/285 (50%), Gaps = 48/285 (16%)
Query: 12 FDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY-------------- 56
FD+FVV+DFEATC + + +PQEIIEFPSV+V G TG+ F+ Y
Sbjct: 2 FDFFVVIDFEATCQEGSVIYPQEIIEFPSVLVDGATGRTLSTFRTYVRPRHHPRLTDFCR 61
Query: 57 ------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNI 98
AL +HD W + G AVVTW DWDC+ MLE ECRFK I
Sbjct: 62 DLTGITQGDVDAGVTLAEALGMHDRWLEAHGAKLGKLAVVTWGDWDCRTMLEGECRFKGI 121
Query: 99 PKPSYFNRWINLRVPFSK----GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAV 151
KP YF+ WINLR+PFS G+VR L++A+ L W GR+HCGLDD++N A LL
Sbjct: 122 EKPHYFDDWINLRLPFSAAFGVGNVRFTLQDAIRKAGLQWEGRLHCGLDDALNTAHLLVE 181
Query: 152 IMQRGFKFSITKSL----TTPQDITQDSVMTWNRHHQFLVRQRKCTFQHTSRDPAEVEEF 207
+M+RG IT SL + P+ + ++ + ++
Sbjct: 182 LMRRGTLLKITGSLAPKRSPPRPEPKAALPCVGPRSVVPTLPPQPQVPLPCAAATGMDTV 241
Query: 208 RYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSA 252
CFCG S ++ PG G +F+GCG TP C++F A
Sbjct: 242 PCCFCGVASKLGVVATPGQMQGHYFYGCGWWTPT----CSFFMWA 282
>gi|242078557|ref|XP_002444047.1| hypothetical protein SORBIDRAFT_07g006360 [Sorghum bicolor]
gi|241940397|gb|EES13542.1| hypothetical protein SORBIDRAFT_07g006360 [Sorghum bicolor]
Length = 287
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 146/294 (49%), Gaps = 60/294 (20%)
Query: 12 FDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY-------------- 56
FD+FVV+DFEATC + + +PQEIIEFPSV+V G TG+ F+ Y
Sbjct: 2 FDFFVVIDFEATCQEGSVIYPQEIIEFPSVLVDGATGRTLSTFRTYVRPRHHPRLTDFCR 61
Query: 57 ------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNI 98
AL +HD+W + G AVVTW DWDC+ MLE ECRFK I
Sbjct: 62 DLTGITQGDVDAGVSLAEALEMHDHWLEAHGAKLGKLAVVTWGDWDCRTMLEGECRFKGI 121
Query: 99 PKPSYFNRWINLRVPFSK----GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAV 151
KP YF+ WINLR+PFS G+VR L++A+ L W GR+HCGLDD++N A LL
Sbjct: 122 EKPHYFDHWINLRLPFSAAFGVGNVRFTLQDAIRKAGLQWEGRLHCGLDDALNTAHLLVE 181
Query: 152 IMQRGFKFSITKSLTTPQD------------ITQDSVMTWNRHHQFLVRQRKCTFQHTSR 199
+M+RG IT SL Q + SV++ Q +
Sbjct: 182 LMRRGTLLKITASLAPTQSPPRPQPKAALPCVGPRSVVS----TLPTQPQPQPQLPLPCA 237
Query: 200 DPAEVEEFRYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSAT 253
++ CFCG S ++ PG G +F+GCG TP C++F AT
Sbjct: 238 AATGMDTVPCCFCGVASKLGVVATPGQMQGHYFYGCGWWTP----ICSFFMWAT 287
>gi|242078527|ref|XP_002444032.1| hypothetical protein SORBIDRAFT_07g006140 [Sorghum bicolor]
gi|241940382|gb|EES13527.1| hypothetical protein SORBIDRAFT_07g006140 [Sorghum bicolor]
Length = 283
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 144/285 (50%), Gaps = 48/285 (16%)
Query: 12 FDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY-------------- 56
FD+FVV+DFEATC + + +PQEIIEFPSV+V G TG+ F+ Y
Sbjct: 2 FDFFVVIDFEATCQEGSVIYPQEIIEFPSVLVDGATGRTLSTFRTYVRPRHHPRLTDFCR 61
Query: 57 ------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNI 98
AL +HD W + G AVVTW DWDC+ ML+ ECRFK I
Sbjct: 62 DLTGITQGDVDAGVTLAEALDMHDRWLEAHGAKLGKLAVVTWGDWDCRTMLDRECRFKGI 121
Query: 99 PKPSYFNRWINLRVPFSK----GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAV 151
KP YF+ WINLR+PFS G+VR L++A+ L W GR+HCGLDD++N A LL
Sbjct: 122 EKPHYFDDWINLRLPFSAAFGVGNVRFTLQDAIRKAGLQWEGRLHCGLDDALNTAHLLVE 181
Query: 152 IMQRGFKFSITKSL----TTPQDITQDSVMTWNRHHQFLVRQRKCTFQHTSRDPAEVEEF 207
+M+RG IT SL + P+ + ++ + A ++
Sbjct: 182 LMRRGTLLKITGSLEPKRSPPRPEPKAALPCVGPRSVVPTLPPQPQAPLPCAAAAGMDTV 241
Query: 208 RYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSA 252
CFCG S ++ PG G +F+GCG TP C++F A
Sbjct: 242 PCCFCGVASKLGVVATPGQMQGHYFYGCGWWTPT----CSFFMWA 282
>gi|326490993|dbj|BAK05596.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 285
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 118/213 (55%), Gaps = 46/213 (21%)
Query: 7 QKLQDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQITVCFQIY--------- 56
Q QDFD+F+VVDFEATC+K +PQEIIEFP+V+V G TG + F+ Y
Sbjct: 46 QLQQDFDFFLVVDFEATCEKDARIYPQEIIEFPAVLVDGATGHLASAFRCYIRPKHHPAL 105
Query: 57 -----------------------ALFLHDNWQQHMGVTPTN-------FAVVTWSDWDCQ 86
AL LHD W + T AVVTW DWDC+
Sbjct: 106 TKFCRDLTGIRQEDVDGGVDLGQALRLHDAWLKAATTTGAGTKRCDGRLAVVTWGDWDCR 165
Query: 87 VMLESECRFKNIPKPSYFNRWINLRVPFSKG---DVRCNLKEAVE---LGWHGRVHCGLD 140
MLE ECRFK I KPSYF+RWINLRVPF R NL+EAV L W GR+HCGLD
Sbjct: 166 TMLEFECRFKGIEKPSYFDRWINLRVPFQAALGSGGRVNLQEAVRVAGLDWEGRLHCGLD 225
Query: 141 DSMNIARLLAVIMQRGFKFSITKSLTTPQDITQ 173
D+ N ARLLA +M RG K SIT SL P I +
Sbjct: 226 DARNTARLLADLMLRGVKMSITDSLALPPPIQR 258
>gi|115438614|ref|NP_001043587.1| Os01g0618000 [Oryza sativa Japonica Group]
gi|54290428|dbj|BAD61298.1| unknown protein [Oryza sativa Japonica Group]
gi|113533118|dbj|BAF05501.1| Os01g0618000 [Oryza sativa Japonica Group]
gi|215693971|dbj|BAG89138.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 304
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 140/282 (49%), Gaps = 57/282 (20%)
Query: 11 DFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
+FD+FVVVDFEATC++ + +PQEIIEFP+V+V TG++ F+ Y
Sbjct: 26 EFDHFVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPRLTDFC 85
Query: 57 -------------------ALFLHDNWQQHMGVTPTN--FAVVTWSDWDCQVMLESECRF 95
AL HD W + GV FAVVTW D DC+ MLE ECRF
Sbjct: 86 RELTGIAQGDVDAGVGLAEALLRHDEWLRAAGVVEGGGRFAVVTWGDADCRTMLEQECRF 145
Query: 96 KNIPKPSYFNRWINLRV----PFSKGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARL 148
K I KP+YF+RW++LRV F G R L+EAV L W GR+HCGLDD+ N ARL
Sbjct: 146 KGIAKPAYFDRWVDLRVHFEAAFGGGGQRVKLQEAVRAAGLEWVGRLHCGLDDACNTARL 205
Query: 149 LAVIMQRGFKFSITKSL-TTPQDITQDSVMTWNRHHQFLVRQRKCTFQHTSRDPAEVEEF 207
L +++RG SIT SL P + Q + Q L+
Sbjct: 206 LVELLRRGVPISITGSLPAAPPPLEQARKQQQQQEMQQLL--------------VPCGAA 251
Query: 208 RYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYF 249
C+CG S ++ PG F+GCGN T GA C +F
Sbjct: 252 VCCYCGVASTGGVMAMPGSTQRRCFYGCGNWTAVSGATCPFF 293
>gi|125571192|gb|EAZ12707.1| hypothetical protein OsJ_02624 [Oryza sativa Japonica Group]
Length = 304
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 139/282 (49%), Gaps = 57/282 (20%)
Query: 11 DFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
+FD+FVVVDFEATC++ + +PQEIIEFP+V+V TG++ F+ Y
Sbjct: 26 EFDHFVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPRLTDFC 85
Query: 57 -------------------ALFLHDNWQQHMGVTPTN--FAVVTWSDWDCQVMLESECRF 95
AL HD W + GV FAVVTW D DC+ MLE ECRF
Sbjct: 86 RELTGIAQGDVDAGVGLAEALLRHDEWLRAAGVVEGGGRFAVVTWGDADCRTMLEQECRF 145
Query: 96 KNIPKPSYFNRWINLRV----PFSKGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARL 148
K I KP+YF+RW++LRV F G R L+EAV L W GR+HCGLDD+ ARL
Sbjct: 146 KGIAKPAYFDRWVDLRVHFEAAFGGGGQRVKLQEAVRAAGLEWVGRLHCGLDDACKTARL 205
Query: 149 LAVIMQRGFKFSITKSL-TTPQDITQDSVMTWNRHHQFLVRQRKCTFQHTSRDPAEVEEF 207
L +++RG SIT SL P + Q + Q L+
Sbjct: 206 LVELLRRGVPISITGSLPAAPPPLEQARKQQQQQEMQQLL--------------VPCGAA 251
Query: 208 RYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYF 249
C+CG S ++ PG F+GCGN T GA C +F
Sbjct: 252 VCCYCGVASTGGVMAMPGSTQRRCFYGCGNWTAVSGATCPFF 293
>gi|125526866|gb|EAY74980.1| hypothetical protein OsI_02878 [Oryza sativa Indica Group]
Length = 304
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 139/282 (49%), Gaps = 57/282 (20%)
Query: 11 DFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
+FD+FVVVDFEATC++ + +PQEIIEFP+V+V TG++ F+ Y
Sbjct: 26 EFDHFVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPRLTDFC 85
Query: 57 -------------------ALFLHDNWQQHMGVTPTN--FAVVTWSDWDCQVMLESECRF 95
AL HD W + GV FAVVTW D DC+ MLE ECRF
Sbjct: 86 RELTGIAQGDVDAGVGLAEALLRHDEWLRAAGVVEGGGRFAVVTWGDADCRTMLEQECRF 145
Query: 96 KNIPKPSYFNRWINLRV----PFSKGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARL 148
K I KP+YF+RW++LRV F G R L+EAV L W GR+HCGLDD+ N ARL
Sbjct: 146 KGIAKPAYFDRWVDLRVHFEAAFGGGGRRVKLQEAVRAAGLEWVGRLHCGLDDACNTARL 205
Query: 149 LAVIMQRGFKFSITKSL-TTPQDITQDSVMTWNRHHQFLVRQRKCTFQHTSRDPAEVEEF 207
L +++RG SIT SL P + Q + Q L+
Sbjct: 206 LVELLRRGVPISITGSLPAAPPPLEQARKQQQQQEMQQLL--------------VPCGAA 251
Query: 208 RYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYF 249
C+CG S ++ G F+GCGN T GA C +F
Sbjct: 252 VCCYCGVASTGGVMAMRGSTQRRCFYGCGNWTAVSGATCPFF 293
>gi|115485705|ref|NP_001067996.1| Os11g0525900 [Oryza sativa Japonica Group]
gi|77551213|gb|ABA94010.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
gi|113645218|dbj|BAF28359.1| Os11g0525900 [Oryza sativa Japonica Group]
Length = 319
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 145/297 (48%), Gaps = 62/297 (20%)
Query: 8 KLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTG-QITVCFQIY--------- 56
+LQ+F YFVV+D EATC++ + +PQEIIEF SV+V G TG Q+ F+ Y
Sbjct: 16 QLQEFAYFVVIDLEATCERGRRIYPQEIIEFASVVVDGATGEQLAEAFRAYVRPLHHREL 75
Query: 57 -----------------------ALFLHDNWQQHMGVTPT--------NFAVVTWSDWDC 85
AL HD W GV FAVVTW DWDC
Sbjct: 76 TDYCRELTGIAQADVDAGVDLREALRAHDAWLDARGVKNAAGGGGGGGGFAVVTWGDWDC 135
Query: 86 QVMLESECRFKNI---PKPSYFNRWINLRVPFSK-----GDVRCNLKEAVE---LGWHGR 134
+ MLE ECRFK I KP YF+RWINL+VPF + G R L+EA+ L + GR
Sbjct: 136 RTMLEGECRFKGIIGDGKPEYFDRWINLKVPFRQVFDRGGARRIGLEEALAVAGLAFEGR 195
Query: 135 VHCGLDDSMNIARLLAVIMQR--GFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQRKC 192
H GLDD+ N ARLLA++M+R G + +IT SL P V
Sbjct: 196 PHSGLDDARNTARLLALLMRRRGGVRLAITGSLPPPPRPPSQLVAIGASAAATPAAAAPG 255
Query: 193 TFQHTSRDPAEVEEFRYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYF 249
+R YC CG S + R+PGP G FFGCG TP +GA C+YF
Sbjct: 256 VGGGGAR-------VHYCQCGVASRVGVARRPGPTQGRRFFGCGRWTPARGAVCSYF 305
>gi|326518256|dbj|BAJ92491.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 321
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 94/198 (47%), Positives = 112/198 (56%), Gaps = 46/198 (23%)
Query: 21 EATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY---------------------- 56
EATC D +I +PQEIIEFP+V+V G +G+I F+ Y
Sbjct: 25 EATCVKDARI-YPQEIIEFPAVLVDGASGRIESSFRRYVRPKHHPVLTQFCRKLTGIRQE 83
Query: 57 ----------ALFLHDNWQQHMGVTPTN-----FAVVTWSDWDCQVMLESECRFKNIPKP 101
AL+LHD W + + AVVTW DWDC+ MLE ECRFK I KP
Sbjct: 84 DVDGGVDLGEALWLHDAWLKAATAGAGSSRRVQLAVVTWGDWDCRTMLEFECRFKGIEKP 143
Query: 102 SYFNRWINLRVPFSK---GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVIMQR 155
SYF+RWINLRVPF G R NL+EAV L W GR+HCGLDD++N ARLLA IM+R
Sbjct: 144 SYFDRWINLRVPFQAALGGGGRVNLEEAVRAAGLDWEGRLHCGLDDALNTARLLAEIMRR 203
Query: 156 GFKFSITKSLTTPQDITQ 173
G K +IT SL P I Q
Sbjct: 204 GVKMTITGSLAPPAPIQQ 221
>gi|326529429|dbj|BAK04661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 345
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/191 (48%), Positives = 108/191 (56%), Gaps = 46/191 (24%)
Query: 21 EATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY---------------------- 56
EATC D +I PQEIIEFP+V+V G TG+I F+ Y
Sbjct: 25 EATCLKDARI-FPQEIIEFPAVLVDGATGRIESAFRRYVRPKHHPVLTQFCRELTGIRQE 83
Query: 57 ----------ALFLHDNWQQHMGVTPTN-----FAVVTWSDWDCQVMLESECRFKNIPKP 101
AL+LHD W + N AVVTW DWDC+ MLE ECRFK I KP
Sbjct: 84 DVDGGVDLGEALWLHDAWLKAATAGAGNRRSGRLAVVTWGDWDCRTMLEFECRFKGIEKP 143
Query: 102 SYFNRWINLRVPFS---KGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVIMQR 155
SYF++WINLRVPF G R NL+EAV L W GR+HCGLDD++N ARLLA IM+R
Sbjct: 144 SYFDQWINLRVPFQVALGGGGRVNLQEAVRAAGLDWEGRLHCGLDDALNTARLLAEIMRR 203
Query: 156 GFKFSITKSLT 166
G K +IT SL
Sbjct: 204 GVKMTITGSLA 214
>gi|326487924|dbj|BAJ89801.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 271
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/206 (49%), Positives = 121/206 (58%), Gaps = 46/206 (22%)
Query: 8 KLQDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY--------- 56
+LQDFD+FVVVDFEATC D +I PQEIIEFP+V+V G TG++ F+ Y
Sbjct: 8 QLQDFDFFVVVDFEATCVKDARI-FPQEIIEFPAVLVDGATGRMESAFRRYVRPKHHPLL 66
Query: 57 -----------------------ALFLHDNWQQHMGVTPTN-----FAVVTWSDWDCQVM 88
AL+LHD+W + N AVVTW DWDC+ M
Sbjct: 67 TQFCRELTGIRQEDVDGGVDLGEALWLHDDWLKEATAGAGNKRSVRLAVVTWGDWDCRTM 126
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFSK---GDVRCNLKEAVE---LGWHGRVHCGLDDS 142
LE ECRFK I KPSYF++WINLRVPF G R NL+EAV L W GR+HCGLDD+
Sbjct: 127 LEFECRFKGIEKPSYFDQWINLRVPFQAAFGGGGRVNLQEAVRAAGLDWEGRLHCGLDDA 186
Query: 143 MNIARLLAVIMQRGFKFSITKSLTTP 168
+ ARLL IM+RG K +IT SL P
Sbjct: 187 LKTARLLVAIMRRGVKITITGSLAPP 212
>gi|326508370|dbj|BAJ99452.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 343
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/190 (48%), Positives = 108/190 (56%), Gaps = 46/190 (24%)
Query: 21 EATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY---------------------- 56
EATC D +I PQEIIEFP+V+V G TG+I F+ Y
Sbjct: 25 EATCLKDARI-FPQEIIEFPAVLVDGATGRIESAFRRYVRPKHHPVLTQFCRELTGIRQE 83
Query: 57 ----------ALFLHDNWQQHMGVTPTN-----FAVVTWSDWDCQVMLESECRFKNIPKP 101
AL+LHD W + N AVVTW DWDC+ MLE ECRFK I KP
Sbjct: 84 DVDGGVDLGEALWLHDAWLKAATAGAGNRRSGRLAVVTWGDWDCRTMLEFECRFKGIEKP 143
Query: 102 SYFNRWINLRVPFS---KGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVIMQR 155
SYF++WINLRVPF G R NL+EAV L W GR+HCGLDD++N ARLLA IM+R
Sbjct: 144 SYFDQWINLRVPFQVALGGGGRVNLQEAVRAAGLDWEGRLHCGLDDALNTARLLAEIMRR 203
Query: 156 GFKFSITKSL 165
G K +IT SL
Sbjct: 204 GVKMTITGSL 213
>gi|326499798|dbj|BAJ90734.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 343
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/191 (48%), Positives = 107/191 (56%), Gaps = 46/191 (24%)
Query: 21 EATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY---------------------- 56
EATC D +I PQEIIEFP+V+V G TG I F+ Y
Sbjct: 25 EATCLKDARI-FPQEIIEFPAVLVDGATGCIESAFRRYVRPKHHPVLTQFCRELTGIRQE 83
Query: 57 ----------ALFLHDNWQQHMGVTPTN-----FAVVTWSDWDCQVMLESECRFKNIPKP 101
AL+LHD W + N AVVTW DWDC+ MLE ECRFK I KP
Sbjct: 84 DLDGGVDLGEALWLHDAWLKAATAGAGNRRSGRLAVVTWGDWDCRTMLEFECRFKGIEKP 143
Query: 102 SYFNRWINLRVPFS---KGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVIMQR 155
SYF++WINLRVPF G R NL+EAV L W GR+HCGLDD++N ARLLA IM+R
Sbjct: 144 SYFDQWINLRVPFQVALGGGGRVNLQEAVRAAGLDWEGRLHCGLDDALNTARLLAEIMRR 203
Query: 156 GFKFSITKSLT 166
G K +IT SL
Sbjct: 204 GVKMTITGSLA 214
>gi|326504778|dbj|BAK06680.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 343
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/191 (48%), Positives = 107/191 (56%), Gaps = 46/191 (24%)
Query: 21 EATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY---------------------- 56
EATC D +I PQEIIEFP+V+V G TG I F+ Y
Sbjct: 25 EATCLKDARI-FPQEIIEFPAVLVDGATGCIESAFRRYVRPKHHPVLTQFCRELTGIRQE 83
Query: 57 ----------ALFLHDNWQQHMGVTPTN-----FAVVTWSDWDCQVMLESECRFKNIPKP 101
AL+LHD W + N AVVTW DWDC+ MLE ECRFK I KP
Sbjct: 84 DVDGGVDLGEALWLHDAWLKAATAGAGNRRSGRLAVVTWGDWDCRTMLEFECRFKGIEKP 143
Query: 102 SYFNRWINLRVPFS---KGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVIMQR 155
SYF++WINLRVPF G R NL+EAV L W GR+HCGLDD++N ARLLA IM+R
Sbjct: 144 SYFDQWINLRVPFQVALGGGGRVNLQEAVRAAGLDWEGRLHCGLDDALNTARLLAEIMRR 203
Query: 156 GFKFSITKSLT 166
G K +IT SL
Sbjct: 204 GVKMTITGSLA 214
>gi|326492964|dbj|BAJ90338.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 280
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 81/120 (67%), Gaps = 11/120 (9%)
Query: 57 ALFLHDNWQQHMGVTPTN-----FAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLR 111
AL+LHD W + N AVVTW DWDC+ MLE ECRFK I KPSYF++WINLR
Sbjct: 31 ALWLHDAWLKAATAGAGNRRSGRLAVVTWGDWDCRTMLEFECRFKGIEKPSYFDQWINLR 90
Query: 112 VPFS---KGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
VPF G R NL+EAV L W GR+HCGLDD++N ARLLA IM+RG K +IT SL
Sbjct: 91 VPFQVALGGGGRVNLQEAVRAAGLDWEGRLHCGLDDALNTARLLAEIMRRGVKMTITGSL 150
>gi|242084190|ref|XP_002442520.1| hypothetical protein SORBIDRAFT_08g021270 [Sorghum bicolor]
gi|241943213|gb|EES16358.1| hypothetical protein SORBIDRAFT_08g021270 [Sorghum bicolor]
Length = 238
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 97/191 (50%), Gaps = 43/191 (22%)
Query: 19 DFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY--------------------- 56
DF+ATC K K +PQEIIEF SV+VSG TGQ+ F Y
Sbjct: 40 DFKATCKKGKQINPQEIIEFSSVLVSGSTGQLESTFHTYVRPRLHPKLTDYCRDLNGIRQ 99
Query: 57 -----------ALFLHDNWQQHMGVTPTN---FAVVTWSDWDCQVMLESECRFKNIPKPS 102
AL +H W Q MG ++ F VVTW +WDC+ MLE ECR K I +P
Sbjct: 100 KDVDAGMELAVALRMHGTWLQEMGTKKSSHFCFVVVTWGNWDCRSMLEPECRLKGIDRPL 159
Query: 103 YFNRWINLRVP----FSKGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVIMQR 155
YF+RWINLR+P F + +L +AV + W GR DD+ N A LL +M+R
Sbjct: 160 YFDRWINLRIPFVATFGGSKPKADLADAVRMVGMEWEGRPRGASDDARNTALLLRELMRR 219
Query: 156 GFKFSITKSLT 166
G + IT SL
Sbjct: 220 GVELGITSSLV 230
>gi|11138061|dbj|BAB17734.1| OSJNBa0036E02.8 [Oryza sativa Japonica Group]
Length = 161
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 91/155 (58%), Gaps = 12/155 (7%)
Query: 107 WINLRVPFSK--GDVRCNLKEAVELG---WHGRVHCGLDDSMNIARLLAVIMQRGFKFSI 161
WINL+VPF + G VRCNLKEAV+L W GR HCGLDD+ N ARLLA++M RGFKFSI
Sbjct: 3 WINLKVPFQEVFGGVRCNLKEAVQLSGLTWEGRAHCGLDDARNTARLLALLMHRGFKFSI 62
Query: 162 TKSL---TTPQDITQDSVMTW----NRHHQFLVRQRKCTFQHTSRDPAEVEEFRYCFCGA 214
T SL + PQ IT S N+ H + Q V++ YC CG
Sbjct: 63 TNSLVWQSAPQSITCQSSPAHSPYPNQSHHKPMEVMGSPVQVNPYAGITVKKPMYCHCGV 122
Query: 215 KSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYF 249
S K+ +PGP G +F+GCGN T +GA C+Y+
Sbjct: 123 LSQIKVTYRPGPMHGRYFYGCGNWTSTRGANCDYW 157
>gi|357119528|ref|XP_003561489.1| PREDICTED: ERI1 exoribonuclease 2-like [Brachypodium distachyon]
Length = 244
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 99/198 (50%), Gaps = 44/198 (22%)
Query: 12 FDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQI-TVCFQIY------------- 56
DYFVVVDF+ATC+K + +PQEIIEF SV+V VTG + F Y
Sbjct: 32 LDYFVVVDFKATCEKGLMFNPQEIIEFSSVLVDPVTGNSESPPFHSYLRPQERPVLTDFC 91
Query: 57 -------------------ALFLHDNWQQHMGVT---PTNFAVVTWSDWDCQVMLESECR 94
AL H+ W + FA+VTW DWDC+ ML+ ECR
Sbjct: 92 REYNGIQQTDVDKGIVLAEALPKHEAWLKEAETKKGRALRFAIVTWGDWDCRSMLDRECR 151
Query: 95 FKNIPKPSYFNRWINLRVPFSKGDVR-----CNLKEAVELG--WHGRVHCGLDDSMNIAR 147
K + P YF++WI+L++PF R LK E G W GR + G ++ N AR
Sbjct: 152 HKGVASPQYFHQWIDLKIPFMDKFGREYIPGSALKALTEAGLLWEGRRNGGFYNAHNKAR 211
Query: 148 LLAVIMQRGFKFSITKSL 165
LL ++Q+G +FSIT L
Sbjct: 212 LLGFLVQQGVQFSITSKL 229
>gi|125534582|gb|EAY81130.1| hypothetical protein OsI_36313 [Oryza sativa Indica Group]
Length = 192
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 80/154 (51%), Gaps = 45/154 (29%)
Query: 8 KLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTG-QITVCFQIY--------- 56
+LQ+F YFVV+D EATC++ + +PQEIIEF SV+V G TG Q+ F+ Y
Sbjct: 16 QLQEFAYFVVIDLEATCERGRRIYPQEIIEFASVVVDGATGEQLAEAFRAYVRPLHHREL 75
Query: 57 -----------------------ALFLHDNWQQHMGVTPT--------NFAVVTWSDWDC 85
AL HD W GV FAVVTW DWDC
Sbjct: 76 TDYCRELTGIAQADVDAGVDLREALRAHDAWLDARGVKNAAGGGGGGGGFAVVTWGDWDC 135
Query: 86 QVMLESECRFKNI---PKPSYFNRWINLRVPFSK 116
+ MLE ECRFK I KP YF+RWINL+VPF +
Sbjct: 136 RTMLEGECRFKGIIGDGKPEYFDRWINLKVPFRQ 169
>gi|242014471|ref|XP_002427913.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis]
gi|212512397|gb|EEB15175.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis]
Length = 386
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 106/220 (48%), Gaps = 51/220 (23%)
Query: 12 FDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY--------------- 56
F Y+VV+DFEATCD K QEIIEFP+V+V+ +I CF++Y
Sbjct: 102 FPYYVVIDFEATCDNKKIDRQEIIEFPAVLVNSKKQKIEDCFRMYCKPRINPKLSQYCME 161
Query: 57 -----------------ALFLHDNW--QQHMGVTPTNFAVVTWSDWDCQVMLESECRFKN 97
L ++NW + ++G +AVVT +WD L S+C + N
Sbjct: 162 LTGITQEQVDNAETFDKVLSHYNNWLKKHNLGTKNKRYAVVTDGNWDMSKFLVSQCHYSN 221
Query: 98 IPKPSYFNRWINLRVPFS----KGDVRCNLK---EAVELGWHGRVHCGLDDSMNIARLLA 150
+P P + W+NL+ F KG+ R LK E + + + GR HCGLDD+ NIAR+L
Sbjct: 222 VPIPKWGKTWVNLKKTFKNFYQKGENRICLKTMLEMLNMEFIGRPHCGLDDAKNIARILL 281
Query: 151 VIMQRGFKFSITKSLTTPQ----------DITQDSVMTWN 180
++ G I + L + + D T+DS T N
Sbjct: 282 KMIYDGSNIQINERLASVRRVNINKNINDDDTEDSRTTLN 321
>gi|291233033|ref|XP_002736458.1| PREDICTED: Eri3 protein-like [Saccoglossus kowalevskii]
Length = 216
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 98/198 (49%), Gaps = 41/198 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQITVCFQIY------------ 56
QD++YF+V+DFEATC+K +PQEIIE P + + T + F Y
Sbjct: 18 QDYNYFLVLDFEATCEKSTKIYPQEIIEIPVLKIHAKTFETEAIFHTYVQPTANPILTPF 77
Query: 57 --------------------ALFLHDNWQQHMGVT--PTNFAVVTWSDWDCQVMLESECR 94
AL + D W G+ T F VT DWD + ML +C+
Sbjct: 78 CTELTGITQDVVCGKPKIEEALKMLDKWMLDQGLLDGETAFVFVTCGDWDLKTMLPGQCK 137
Query: 95 FKNIPKPSYFNRWINLRVPFS---KGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARL 148
+ +P +YF WIN++ PFS + ++R +L E ++ L HGR H G+DD+ NIA +
Sbjct: 138 YFRLPIANYFKSWINIKRPFSEVVRPNIRVDLMEMLQMLDLEHHGRHHSGIDDTKNIANI 197
Query: 149 LAVIMQRGFKFSITKSLT 166
L + +RG KF T LT
Sbjct: 198 LQELAKRGCKFKATSGLT 215
>gi|427781641|gb|JAA56272.1| Putative eri1 exoribonuclease 3 [Rhipicephalus pulchellus]
Length = 256
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 39/190 (20%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA---------- 57
Q +DYF+++DFEATC +K +P PQEIIEFP + V+G T + F Y
Sbjct: 67 QAYDYFLMLDFEATCSAEKGVPTPQEIIEFPVLKVNGRTFETESTFHTYVQPQAHPQLTA 126
Query: 58 ----------------------LFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
L D+W + G+ +T+ DWD Q ML S+C +
Sbjct: 127 FCTELTGIVQDMVDDQPHLQEVLSRFDDWMREQGLLQARTVFITFGDWDLQKMLPSQCAY 186
Query: 96 KNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAV---ELGWHGRVHCGLDDSMNIARLLA 150
IP P Y RWINL+ F++ G L +A+ L GR H G+DD N+ +L+A
Sbjct: 187 LGIPVPPYMTRWINLKRAFAECTGHWPKTLLDALRFCRLPHLGRHHSGIDDCRNLTQLVA 246
Query: 151 VIMQRGFKFS 160
+ RG++F+
Sbjct: 247 WLASRGYQFA 256
>gi|443705651|gb|ELU02084.1| hypothetical protein CAPTEDRAFT_224647 [Capitella teleta]
Length = 394
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 126/302 (41%), Gaps = 78/302 (25%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL-----FLHD 62
Q F Y +V+DFE+TC D K PQEIIEFP+V+++ G+I FQ Y + L
Sbjct: 33 QPFAYLIVLDFESTCWQDTKF-KPQEIIEFPAVLLNTSNGEIEAHFQKYVVPLEYPILSA 91
Query: 63 NWQQHMGVT--------PTNFAV-------------------------------VTWSDW 83
QQ G+T P N + VTWSDW
Sbjct: 92 FCQQLTGITQAQVDDGIPINHCLRSFTTWLQKIKQERNLVFNSVTDATSKGCTFVTWSDW 151
Query: 84 DCQVMLESECRFKNIPKPSYFNRWINLRVPFSK------GDVRCNLKEAVELGWHGRVHC 137
D V L +ECR K + P+ N WI+LR + + +LK+ + + + GR HC
Sbjct: 152 DLGVCLRNECRRKQLRCPAELNSWIDLRAAYKTFYGRQPNGLNGSLKD-LGMDYDGREHC 210
Query: 138 GLDDSMNIARLLAVIMQRGFKFSITKSL---TTPQDIT--QDSVMTWNRH--HQFLVRQR 190
GLDD+ N A+L +M G +ITK+L + P +T Q V R
Sbjct: 211 GLDDAKNTAKLAWRMMCDGCILNITKTLDQGSIPIQLTALQPRVPANKRQAPAPLTSHMS 270
Query: 191 KCTFQHTSRDPAEVEEFRY-----------------CFCGAKSFKKIIRKPGPKCGSFFF 233
C+ + S V E Y C CG ++ + + + PGP G FF
Sbjct: 271 NCSSVNDSVIGVTVNESSYRTPCNGLAPPLKRTPPMCQCGRRAKRHVTQTPGPNSGRTFF 330
Query: 234 GC 235
C
Sbjct: 331 SC 332
>gi|148698603|gb|EDL30550.1| prion protein interacting protein 1, isoform CRA_a [Mus musculus]
Length = 259
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 92/200 (46%), Gaps = 43/200 (21%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA----- 57
PF PQ+ + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 59 PFPPQR---YHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVH 115
Query: 58 ---------------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVM 88
L D W G+ N VT DWD +VM
Sbjct: 116 PQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVM 175
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDS 142
L +C + +P YF +WINL+ +S + ++ + + L GR H G+DD
Sbjct: 176 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 235
Query: 143 MNIARLLAVIMQRGFKFSIT 162
NIA ++ + RGF F T
Sbjct: 236 KNIANIMKTLAYRGFIFKQT 255
>gi|187469812|gb|AAI67080.1| Unknown (protein for IMAGE:8363520) [Rattus norvegicus]
Length = 292
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 92/200 (46%), Gaps = 43/200 (21%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA----- 57
PF PQ+ + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 92 PFPPQR---YHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVH 148
Query: 58 ---------------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVM 88
L D W G+ N VT DWD +VM
Sbjct: 149 PQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVM 208
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDS 142
L +C + +P YF +WINL+ +S + ++ + + L GR H G+DD
Sbjct: 209 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 268
Query: 143 MNIARLLAVIMQRGFKFSIT 162
NIA ++ + RGF F T
Sbjct: 269 KNIANIMKTLAYRGFIFKQT 288
>gi|109730985|gb|AAI17541.1| Eri3 protein [Mus musculus]
Length = 296
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 92/200 (46%), Gaps = 43/200 (21%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA----- 57
PF PQ+ + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 96 PFPPQR---YHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVH 152
Query: 58 ---------------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVM 88
L D W G+ N VT DWD +VM
Sbjct: 153 PQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVM 212
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDS 142
L +C + +P YF +WINL+ +S + ++ + + L GR H G+DD
Sbjct: 213 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 272
Query: 143 MNIARLLAVIMQRGFKFSIT 162
NIA ++ + RGF F T
Sbjct: 273 KNIANIMKTLAYRGFIFKQT 292
>gi|28174986|gb|AAH21405.2| Eri3 protein [Mus musculus]
Length = 264
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 92/200 (46%), Gaps = 43/200 (21%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA----- 57
PF PQ+ + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 64 PFPPQR---YHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVH 120
Query: 58 ---------------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVM 88
L D W G+ N VT DWD +VM
Sbjct: 121 PQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVM 180
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDS 142
L +C + +P YF +WINL+ +S + ++ + + L GR H G+DD
Sbjct: 181 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 240
Query: 143 MNIARLLAVIMQRGFKFSIT 162
NIA ++ + RGF F T
Sbjct: 241 KNIANIMKTLAYRGFIFKQT 260
>gi|392340620|ref|XP_003754131.1| PREDICTED: ERI1 exoribonuclease 3 isoform 2 [Rattus norvegicus]
gi|392348244|ref|XP_003750052.1| PREDICTED: ERI1 exoribonuclease 3 isoform 1 [Rattus norvegicus]
Length = 296
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 92/200 (46%), Gaps = 43/200 (21%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA----- 57
PF PQ+ + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 96 PFPPQR---YHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVH 152
Query: 58 ---------------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVM 88
L D W G+ N VT DWD +VM
Sbjct: 153 PQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVM 212
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDS 142
L +C + +P YF +WINL+ +S + ++ + + L GR H G+DD
Sbjct: 213 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 272
Query: 143 MNIARLLAVIMQRGFKFSIT 162
NIA ++ + RGF F T
Sbjct: 273 KNIANIMKTLAYRGFIFKQT 292
>gi|354470182|ref|XP_003497438.1| PREDICTED: ERI1 exoribonuclease 3-like [Cricetulus griseus]
Length = 296
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 92/200 (46%), Gaps = 43/200 (21%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA----- 57
PF PQ+ + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 96 PFPPQR---YHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVH 152
Query: 58 ---------------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVM 88
L D W G+ N VT DWD +VM
Sbjct: 153 PQLTPFCTELTGIIQAMVDGQPRLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVM 212
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDS 142
L +C + +P YF +WINL+ +S + ++ + + L GR H G+DD
Sbjct: 213 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 272
Query: 143 MNIARLLAVIMQRGFKFSIT 162
NIA ++ + RGF F T
Sbjct: 273 KNIANIMKTLAYRGFIFKQT 292
>gi|195585608|ref|XP_002082573.1| GD11641 [Drosophila simulans]
gi|194194582|gb|EDX08158.1| GD11641 [Drosophila simulans]
Length = 281
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 103/217 (47%), Gaps = 54/217 (24%)
Query: 9 LQDFDYFVVVDFEATC--DKKIPH--PQEIIEFPSVIVSGVTGQITVCFQIY-------- 56
+Q + Y + VDFEATC ++ PH EIIEFP+V+V+ TG+I F Y
Sbjct: 59 MQPYSYVIAVDFEATCWENQAPPHWREAEIIEFPAVLVNLKTGKIESEFHQYILPIESPR 118
Query: 57 ------------------------ALFLHDNWQQHMGVTPT-------------NFAVVT 79
A+ + + W +H T N A VT
Sbjct: 119 LSTYCTELTGIQQKTVDSGIPLTTAIVMFNEWLRHEIRTRNLTLPKMNKSNVLGNCAFVT 178
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-SKGDVR-CNLKEA---VELGWHGR 134
W+DWD + L EC K I KP+YFN+WI++R + S R CN +A V L + GR
Sbjct: 179 WTDWDFGICLAKECNRKGIRKPAYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGR 238
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDI 171
H G+DD+ N+ L+ +M+ G FSITK LT Q +
Sbjct: 239 AHSGIDDAKNLGALMCKMMRDGALFSITKDLTPYQQL 275
>gi|387913954|gb|AFK10586.1| prion protein interacting protein [Callorhinchus milii]
Length = 276
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 93/196 (47%), Gaps = 42/196 (21%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
Q + F+V+DFEA CDK++ PQEIIEFP V + G T +I F Y
Sbjct: 80 QLYHNFLVLDFEAACDKELIKPQEIIEFPVVRLHGRTLEIQSVFHTYVQPEAHPQLTPFC 139
Query: 57 -------------------ALFLHDNWQQHMGVTPTNF--AVVTWSDWDCQVMLESECRF 95
AL + D W ++ G+ N VT DWD + ML +C++
Sbjct: 140 TELTGIVQSMVDGQPTLQRALQMVDEWMKNEGLLDPNVNSIFVTCGDWDLRKMLPGQCQY 199
Query: 96 KNIPKPSYFNRWINLRVPFS-------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+P P YF +WINL+ + K + C + E + L GR+H G+DD NIA +
Sbjct: 200 LKLPVPDYFKKWINLKKAYGTAMETYPKSGLPC-MVEGLALSHIGRLHSGIDDCKNIANI 258
Query: 149 LAVIMQRGFKFSITKS 164
+ + ++GF F T S
Sbjct: 259 MKELARKGFIFKETGS 274
>gi|344238514|gb|EGV94617.1| Prion protein-interacting protein [Cricetulus griseus]
Length = 206
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 92/200 (46%), Gaps = 43/200 (21%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA----- 57
PF PQ+ + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 6 PFPPQR---YHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVH 62
Query: 58 ---------------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVM 88
L D W G+ N VT DWD +VM
Sbjct: 63 PQLTPFCTELTGIIQAMVDGQPRLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVM 122
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDS 142
L +C + +P YF +WINL+ +S + ++ + + L GR H G+DD
Sbjct: 123 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 182
Query: 143 MNIARLLAVIMQRGFKFSIT 162
NIA ++ + RGF F T
Sbjct: 183 KNIANIMKTLAYRGFIFKQT 202
>gi|33859765|ref|NP_536717.2| ERI1 exoribonuclease 3 [Mus musculus]
gi|81913994|sp|Q8C460.1|ERI3_MOUSE RecName: Full=ERI1 exoribonuclease 3; AltName: Full=Prion
interactor 1; AltName: Full=Prion protein-interacting
protein
gi|26350187|dbj|BAC38733.1| unnamed protein product [Mus musculus]
gi|74184336|dbj|BAE25703.1| unnamed protein product [Mus musculus]
gi|109733321|gb|AAI16686.1| Exoribonuclease 3 [Mus musculus]
Length = 337
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 92/201 (45%), Gaps = 43/201 (21%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA----- 57
PF PQ+ + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 137 PFPPQR---YHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVH 193
Query: 58 ---------------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVM 88
L D W G+ N VT DWD +VM
Sbjct: 194 PQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVM 253
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDS 142
L +C + +P YF +WINL+ +S + ++ + + L GR H G+DD
Sbjct: 254 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313
Query: 143 MNIARLLAVIMQRGFKFSITK 163
NIA ++ + RGF F T
Sbjct: 314 KNIANIMKTLAYRGFIFKQTS 334
>gi|293347578|ref|XP_001071982.2| PREDICTED: ERI1 exoribonuclease 3 isoform 1 [Rattus norvegicus]
gi|392348242|ref|XP_233435.5| PREDICTED: ERI1 exoribonuclease 3 isoform 2 [Rattus norvegicus]
gi|149035532|gb|EDL90213.1| similar to prion protein interacting protein 1, isoform CRA_a
[Rattus norvegicus]
Length = 337
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 92/201 (45%), Gaps = 43/201 (21%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA----- 57
PF PQ+ + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 137 PFPPQR---YHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVH 193
Query: 58 ---------------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVM 88
L D W G+ N VT DWD +VM
Sbjct: 194 PQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVM 253
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDS 142
L +C + +P YF +WINL+ +S + ++ + + L GR H G+DD
Sbjct: 254 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313
Query: 143 MNIARLLAVIMQRGFKFSITK 163
NIA ++ + RGF F T
Sbjct: 314 KNIANIMKTLAYRGFIFKQTS 334
>gi|441634258|ref|XP_004089825.1| PREDICTED: ERI1 exoribonuclease 3 isoform 2 [Nomascus leucogenys]
Length = 314
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 118 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 177
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 178 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 237
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 238 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 297
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 298 KTLAYRGFIFKQT 310
>gi|403291855|ref|XP_003936978.1| PREDICTED: ERI1 exoribonuclease 3 isoform 3 [Saimiri boliviensis
boliviensis]
Length = 314
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 118 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 177
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 178 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 237
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 238 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 297
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 298 KTLAYRGFIFKQT 310
>gi|410032833|ref|XP_003949440.1| PREDICTED: ERI1 exoribonuclease 3 isoform 1 [Pan troglodytes]
Length = 314
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 118 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 177
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 178 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 237
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 238 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 297
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 298 KTLAYRGFIFKQT 310
>gi|397483348|ref|XP_003812865.1| PREDICTED: ERI1 exoribonuclease 3 [Pan paniscus]
Length = 314
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 118 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 177
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 178 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 237
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 238 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 297
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 298 KTLAYRGFIFKQT 310
>gi|387015834|gb|AFJ50036.1| ERI1 exoribonuclease 3-like [Crotalus adamanteus]
Length = 257
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 92/193 (47%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 61 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 120
Query: 58 --------------------LFLHDNWQQHMGVT-PTNFAV-VTWSDWDCQVMLESECRF 95
L D W G+ PT ++ VT DWD +VML +C++
Sbjct: 121 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPTVKSIFVTCGDWDLKVMLPGQCQY 180
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 181 LGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNKGLNLQHIGRPHSGIDDCKNIANIM 240
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 241 KTLAHRGFIFKQT 253
>gi|73977201|ref|XP_862517.1| PREDICTED: ERI1 exoribonuclease 3 isoform 4 [Canis lupus
familiaris]
gi|301781887|ref|XP_002926358.1| PREDICTED: ERI1 exoribonuclease 3-like isoform 1 [Ailuropoda
melanoleuca]
Length = 259
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 93/200 (46%), Gaps = 43/200 (21%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA----- 57
PF PQ+ + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 59 PFPPQR---YHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVH 115
Query: 58 ---------------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVM 88
L D W G+ N VT DWD +VM
Sbjct: 116 PQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVM 175
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDS 142
L +C++ +P YF +WINL+ +S + ++ + + L GR H G+DD
Sbjct: 176 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 235
Query: 143 MNIARLLAVIMQRGFKFSIT 162
NIA ++ + +GF F T
Sbjct: 236 KNIANIMKTLAYQGFIFKQT 255
>gi|426215380|ref|XP_004001950.1| PREDICTED: ERI1 exoribonuclease 3 isoform 2 [Ovis aries]
Length = 259
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 63 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 122
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 123 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 182
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 183 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 242
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 243 KTLAYRGFIFKQT 255
>gi|297278522|ref|XP_002801563.1| PREDICTED: ERI1 exoribonuclease 3 isoform 2 [Macaca mulatta]
gi|390465850|ref|XP_003733476.1| PREDICTED: ERI1 exoribonuclease 3 isoform 2 [Callithrix jacchus]
gi|390465852|ref|XP_003733477.1| PREDICTED: ERI1 exoribonuclease 3 isoform 3 [Callithrix jacchus]
gi|403291851|ref|XP_003936976.1| PREDICTED: ERI1 exoribonuclease 3 isoform 1 [Saimiri boliviensis
boliviensis]
gi|403291853|ref|XP_003936977.1| PREDICTED: ERI1 exoribonuclease 3 isoform 2 [Saimiri boliviensis
boliviensis]
gi|403291857|ref|XP_003936979.1| PREDICTED: ERI1 exoribonuclease 3 isoform 4 [Saimiri boliviensis
boliviensis]
gi|426329369|ref|XP_004025713.1| PREDICTED: ERI1 exoribonuclease 3 isoform 2 [Gorilla gorilla
gorilla]
gi|119627449|gb|EAX07044.1| prion protein interacting protein, isoform CRA_c [Homo sapiens]
gi|194387402|dbj|BAG60065.1| unnamed protein product [Homo sapiens]
Length = 259
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 63 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 122
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 123 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 182
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 183 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 242
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 243 KTLAYRGFIFKQT 255
>gi|194882086|ref|XP_001975144.1| GG22157 [Drosophila erecta]
gi|190658331|gb|EDV55544.1| GG22157 [Drosophila erecta]
Length = 223
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 104/223 (46%), Gaps = 54/223 (24%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIY-------- 56
+Q + Y + VDFEATC +K PQ EIIEFP+V+V+ TG+I F Y
Sbjct: 1 MQPYSYVIAVDFEATCWEKQAPPQWREAEIIEFPAVLVNLKTGKIEAEFHKYILPIESPR 60
Query: 57 ------------------------ALFLHDNW-------------QQHMGVTPTNFAVVT 79
AL + W + + N A VT
Sbjct: 61 LSTYCTELTGIQQKTVDSGVPLQTALMMFHEWLRKELRARNLTLPKMNKSNIMGNCAFVT 120
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-SKGDVR-CNLKEAVE---LGWHGR 134
W+DWD + L EC K + K +YFN+WI++R + S R CN +A+E L + GR
Sbjct: 121 WTDWDFGICLSKECTRKRMRKAAYFNQWIDVRAVYRSWYQYRPCNFTDALEHVGLAFEGR 180
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
H G+DD+ N+ L+ +++ G FSITK LT Q + + V+
Sbjct: 181 AHSGIDDAKNLGALMCKMVRDGALFSITKDLTPYQQLNPNCVL 223
>gi|345780904|ref|XP_850849.2| PREDICTED: ERI1 exoribonuclease 3 isoform 2 [Canis lupus
familiaris]
gi|410967106|ref|XP_003990063.1| PREDICTED: ERI1 exoribonuclease 3 [Felis catus]
Length = 337
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 93/201 (46%), Gaps = 43/201 (21%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA----- 57
PF PQ+ + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 137 PFPPQR---YHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVH 193
Query: 58 ---------------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVM 88
L D W G+ N VT DWD +VM
Sbjct: 194 PQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVM 253
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDS 142
L +C++ +P YF +WINL+ +S + ++ + + L GR H G+DD
Sbjct: 254 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313
Query: 143 MNIARLLAVIMQRGFKFSITK 163
NIA ++ + +GF F T
Sbjct: 314 KNIANIMKTLAYQGFIFKQTS 334
>gi|307776322|pdb|2XRI|A Chain A, Crystal Structure Of Human Eri1 Exoribonuclease 3
Length = 224
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 28 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 87
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 88 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 147
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 148 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 207
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 208 KTLAYRGFIFKQT 220
>gi|164420717|ref|NP_001106713.1| ERI1 exoribonuclease 3 isoform 1 [Bos taurus]
gi|166989902|sp|A6QLH5.1|ERI3_BOVIN RecName: Full=ERI1 exoribonuclease 3; AltName: Full=Prion
interactor 1; AltName: Full=Prion protein-interacting
protein
gi|151556386|gb|AAI47968.1| ERI3 protein [Bos taurus]
gi|296488926|tpg|DAA31039.1| TPA: ERI1 exoribonuclease 3 isoform 1 [Bos taurus]
gi|440907277|gb|ELR57437.1| ERI1 exoribonuclease 3 [Bos grunniens mutus]
Length = 337
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 200
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 201 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 260
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 261 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 320
Query: 150 AVIMQRGFKFSITK 163
+ RGF F T
Sbjct: 321 KTLAYRGFIFKQTS 334
>gi|149693719|ref|XP_001497227.1| PREDICTED: ERI1 exoribonuclease 3 [Equus caballus]
Length = 337
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 200
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 201 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 260
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 261 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 320
Query: 150 AVIMQRGFKFSITK 163
+ RGF F T
Sbjct: 321 KTLAYRGFIFKQTS 334
>gi|344287723|ref|XP_003415602.1| PREDICTED: ERI1 exoribonuclease 3 [Loxodonta africana]
Length = 337
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 200
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 201 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 260
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 261 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 320
Query: 150 AVIMQRGFKFSITK 163
+ RGF F T
Sbjct: 321 KTLAYRGFIFKQTS 334
>gi|291399043|ref|XP_002715197.1| PREDICTED: prion protein interacting protein [Oryctolagus
cuniculus]
Length = 337
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 200
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 201 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 260
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 261 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 320
Query: 150 AVIMQRGFKFSITK 163
+ RGF F T
Sbjct: 321 KTLAYRGFIFKQTS 334
>gi|449266425|gb|EMC77478.1| Prion protein-interacting protein [Columba livia]
Length = 274
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 92/193 (47%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 78 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 137
Query: 58 --------------------LFLHDNWQQHMGVT-PTNFAV-VTWSDWDCQVMLESECRF 95
L D W G+ P+ ++ VT DWD +VML +C++
Sbjct: 138 TELTGIIQGMVDGQPSLQQVLERVDEWMAKEGLLDPSVKSIFVTCGDWDLKVMLPGQCQY 197
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 198 LGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNKGLNLQHIGRPHSGIDDCKNIANIM 257
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 258 KTLAHRGFIFKQT 270
>gi|348552232|ref|XP_003461932.1| PREDICTED: ERI1 exoribonuclease 3-like [Cavia porcellus]
Length = 337
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 200
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 201 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 260
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 261 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 320
Query: 150 AVIMQRGFKFSITK 163
+ RGF F T
Sbjct: 321 KTLAYRGFIFKQTS 334
>gi|74136559|ref|NP_076971.1| ERI1 exoribonuclease 3 [Homo sapiens]
gi|332259224|ref|XP_003278687.1| PREDICTED: ERI1 exoribonuclease 3 isoform 1 [Nomascus leucogenys]
gi|332808745|ref|XP_513102.3| PREDICTED: ERI1 exoribonuclease 3 isoform 2 [Pan troglodytes]
gi|426329367|ref|XP_004025712.1| PREDICTED: ERI1 exoribonuclease 3 isoform 1 [Gorilla gorilla
gorilla]
gi|172045564|sp|O43414.2|ERI3_HUMAN RecName: Full=ERI1 exoribonuclease 3; AltName: Full=Prion
interactor 1; AltName: Full=Prion protein-interacting
protein
gi|158254566|dbj|BAF83256.1| unnamed protein product [Homo sapiens]
gi|162319286|gb|AAI56813.1| Exoribonuclease 3 [synthetic construct]
gi|261860912|dbj|BAI46978.1| exoribonuclease 3 [synthetic construct]
gi|380816434|gb|AFE80091.1| ERI1 exoribonuclease 3 [Macaca mulatta]
gi|384949372|gb|AFI38291.1| ERI1 exoribonuclease 3 [Macaca mulatta]
gi|410207994|gb|JAA01216.1| ERI1 exoribonuclease family member 3 [Pan troglodytes]
gi|410250276|gb|JAA13105.1| ERI1 exoribonuclease family member 3 [Pan troglodytes]
gi|410290452|gb|JAA23826.1| ERI1 exoribonuclease family member 3 [Pan troglodytes]
gi|410333785|gb|JAA35839.1| ERI1 exoribonuclease family member 3 [Pan troglodytes]
gi|410333787|gb|JAA35840.1| ERI1 exoribonuclease family member 3 [Pan troglodytes]
gi|410333789|gb|JAA35841.1| ERI1 exoribonuclease family member 3 [Pan troglodytes]
Length = 337
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 200
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 201 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 260
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 261 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 320
Query: 150 AVIMQRGFKFSITK 163
+ RGF F T
Sbjct: 321 KTLAYRGFIFKQTS 334
>gi|119627448|gb|EAX07043.1| prion protein interacting protein, isoform CRA_b [Homo sapiens]
Length = 206
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 10 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 69
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 70 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 129
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 130 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 189
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 190 KTLAYRGFIFKQT 202
>gi|390465848|ref|XP_002750780.2| PREDICTED: ERI1 exoribonuclease 3 isoform 1 [Callithrix jacchus]
Length = 337
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 200
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 201 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 260
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 261 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 320
Query: 150 AVIMQRGFKFSITK 163
+ RGF F T
Sbjct: 321 KTLAYRGFIFKQTS 334
>gi|297278520|ref|XP_001093178.2| PREDICTED: ERI1 exoribonuclease 3 isoform 1 [Macaca mulatta]
Length = 335
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 139 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 198
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 199 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 258
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 259 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 318
Query: 150 AVIMQRGFKFSITK 163
+ RGF F T
Sbjct: 319 KTLAYRGFIFKQTS 332
>gi|431910041|gb|ELK13128.1| Prion protein-interacting protein [Pteropus alecto]
Length = 337
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 200
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 201 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 260
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 261 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 320
Query: 150 AVIMQRGFKFSITK 163
+ RGF F T
Sbjct: 321 KTLAYRGFIFKQTS 334
>gi|118094519|ref|XP_422418.2| PREDICTED: ERI1 exoribonuclease 3 [Gallus gallus]
Length = 265
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 92/193 (47%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 69 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 128
Query: 58 --------------------LFLHDNWQQHMGVT-PTNFAV-VTWSDWDCQVMLESECRF 95
L D W G+ P+ ++ VT DWD +VML +C++
Sbjct: 129 TELTGIIQGMVDGQPSLQQVLERVDEWMAKEGLLDPSVKSIFVTCGDWDLKVMLPGQCQY 188
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 189 LGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNKGLNLQHIGRPHSGIDDCKNIANIM 248
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 249 KTLAHRGFIFKQT 261
>gi|351696855|gb|EHA99773.1| Prion protein-interacting protein [Heterocephalus glaber]
Length = 337
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 200
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 201 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 260
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 261 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 320
Query: 150 AVIMQRGFKFSITK 163
+ RGF F T
Sbjct: 321 KTLAYRGFIFKQTS 334
>gi|2852640|gb|AAC19158.1| unknown [Homo sapiens]
Length = 397
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 201 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 260
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 261 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 320
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 321 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 380
Query: 150 AVIMQRGFKFSITK 163
+ RGF F T
Sbjct: 381 KTLAYRGFIFKQTS 394
>gi|395857747|ref|XP_003801246.1| PREDICTED: ERI1 exoribonuclease 3 [Otolemur garnettii]
Length = 337
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 200
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 201 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 260
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 261 LGLPIADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 320
Query: 150 AVIMQRGFKFSITK 163
+ RGF F T
Sbjct: 321 KTLAYRGFIFKQTS 334
>gi|449508749|ref|XP_002190758.2| PREDICTED: ERI1 exoribonuclease 3 [Taeniopygia guttata]
Length = 278
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 92/193 (47%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 82 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 141
Query: 58 --------------------LFLHDNWQQHMGVT-PTNFAV-VTWSDWDCQVMLESECRF 95
L D W G+ P+ ++ VT DWD +VML +C++
Sbjct: 142 TELTGIIQGMVDGQPSLQQVLERVDEWMAKEGLLDPSVKSIFVTCGDWDLKVMLPGQCQY 201
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 202 LGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNKGLNLQHIGRPHSGIDDCKNIANIM 261
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 262 KTLAHRGFIFKQT 274
>gi|327271053|ref|XP_003220302.1| PREDICTED: ERI1 exoribonuclease 3-like [Anolis carolinensis]
Length = 229
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 92/193 (47%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 33 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHSQLTPFC 92
Query: 58 --------------------LFLHDNWQQHMGVT-PTNFAV-VTWSDWDCQVMLESECRF 95
L D W G+ P+ ++ VT DWD +VML +C++
Sbjct: 93 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPSVKSIFVTCGDWDLKVMLPGQCQY 152
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 153 LGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNKGLNLQHIGRPHSGIDDCKNIANIM 212
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 213 KTLAHRGFIFKQT 225
>gi|332224715|ref|XP_003261514.1| PREDICTED: ERI1 exoribonuclease 2 [Nomascus leucogenys]
Length = 689
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 100/226 (44%), Gaps = 55/226 (24%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQH-----MGVT-PTNFAV-----VT 79
++H QQ GV+ P+ V VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKSCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWN 180
H GLDDS N A L +++ G IT+SL S++ N
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSLNKVPTKKNSSILARN 257
>gi|426381460|ref|XP_004057358.1| PREDICTED: ERI1 exoribonuclease 2 [Gorilla gorilla gorilla]
Length = 691
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 99/226 (43%), Gaps = 55/226 (24%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQH-----MGVTPTNF------AVVT 79
++H QQ GV+ + A VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSASEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWN 180
H GLDDS N A L +++ G IT+SL S++ N
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSLNKVPTKKNSSILARN 257
>gi|332845430|ref|XP_003315043.1| PREDICTED: ERI1 exoribonuclease 2 isoform 1 [Pan troglodytes]
gi|410218774|gb|JAA06606.1| ERI1 exoribonuclease family member 2 [Pan troglodytes]
gi|410257124|gb|JAA16529.1| ERI1 exoribonuclease family member 2 [Pan troglodytes]
gi|410290502|gb|JAA23851.1| ERI1 exoribonuclease family member 2 [Pan troglodytes]
Length = 691
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 99/226 (43%), Gaps = 55/226 (24%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQH-----MGVTPTNF------AVVT 79
++H QQ GV+ + A VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSASEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWN 180
H GLDDS N A L +++ G IT+SL S++ N
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSLNKVPTKKNSSILARN 257
>gi|296219709|ref|XP_002756006.1| PREDICTED: ERI1 exoribonuclease 2 [Callithrix jacchus]
Length = 687
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 100/226 (44%), Gaps = 55/226 (24%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI------------------ 49
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI
Sbjct: 32 QLFDYLIVIDFESTCWNDGKRHHSQEIIEFPAVLLNTSTGQIESEFHAYVQPQEHPILSE 91
Query: 50 -------------------TVCFQIYALFLHDNWQQH-----MGVT-PTNFAV-----VT 79
+C + ++H QQ GV+ P+ V VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFAAGVSEPSTSEVNLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWN 180
H GLDDS N A L +++ G IT+SL S++ N
Sbjct: 212 EHSGLDDSRNTALLAWKMIKDGCLMKITRSLNKVPTKKNSSILARN 257
>gi|290992875|ref|XP_002679059.1| exonuclease III protein [Naegleria gruberi]
gi|284092674|gb|EFC46315.1| exonuclease III protein [Naegleria gruberi]
Length = 220
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 39/204 (19%)
Query: 10 QDFDYFVVVDFEATCDKKIPH-PQEIIEFPSVIVSGVTGQITVCFQIYA----------- 57
Q FDYF+V+DFEA+CD KI + EIIEFP+V ++ T +I F Y
Sbjct: 12 QKFDYFLVLDFEASCDDKIKNFRNEIIEFPTVAINAKTVKIDHEFHYYVKPKANPILTDF 71
Query: 58 ---------------------LFLHDNWQQHMGVTPT-NFAVVTWSDWDCQVMLESECRF 95
L H+ W ++ FA VT DWD + M+ +CR
Sbjct: 72 CKELTGIQQDWIDNGVEFEDVLKFHNQWMMDNFISKNLTFAFVTCGDWDLKTMITKQCRK 131
Query: 96 KNIPKPSYFNRWINLRVPFSKGDVR-----CNLKEAVELGWHGRVHCGLDDSMNIARLLA 150
+NI PSYF+ W+N++ +++ + ++ ++L G+ H G+DD NIAR+L
Sbjct: 132 ENIKVPSYFSSWVNIKKKYTEIYSKHVHGMTDMLNHMKLELIGKHHSGIDDCKNIARILC 191
Query: 151 VIMQRGFKFSITKSLTTPQDITQD 174
++++G + IT + +D+ D
Sbjct: 192 EMLKQGKQIDITAHIDDFKDMYVD 215
>gi|14714721|gb|AAH10503.1| Exoribonuclease 2 [Homo sapiens]
gi|123996651|gb|ABM85927.1| exonuclease domain containing 1 [synthetic construct]
gi|123996653|gb|ABM85928.1| exonuclease domain containing 1 [synthetic construct]
gi|307684634|dbj|BAJ20357.1| ERI1 exoribonuclease family member 2 [synthetic construct]
Length = 328
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 104/242 (42%), Gaps = 59/242 (24%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQHMGVTPTNF-----------AVVT 79
++H QQ + T A VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDI----TQDSVMTWNRHHQFLVRQR 190
H GLDDS N A L +++ G IT+SL + T +S + H FL ++
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSLNKGPFLLPSWTWNSDLASGDQHAFLKQEF 271
Query: 191 KC 192
C
Sbjct: 272 GC 273
>gi|218505674|ref|NP_542394.2| ERI1 exoribonuclease 2 isoform 2 [Homo sapiens]
gi|119587240|gb|EAW66836.1| similar to RIKEN cDNA 4933424N09 gene, isoform CRA_a [Homo sapiens]
Length = 328
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 104/242 (42%), Gaps = 59/242 (24%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQHMGVTPTNF-----------AVVT 79
++H QQ + T A VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDI----TQDSVMTWNRHHQFLVRQR 190
H GLDDS N A L +++ G IT+SL + T +S + H FL ++
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSLNKGPFLLPSWTWNSDLASGDQHAFLQQEF 271
Query: 191 KC 192
C
Sbjct: 272 GC 273
>gi|355756611|gb|EHH60219.1| ERI1 exoribonuclease 2 [Macaca fascicularis]
Length = 690
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 93/211 (44%), Gaps = 55/211 (26%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKRHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQHMGVTPTNF-----------AVVT 79
++H QQ + T A VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H GLDDS N A L +++ G IT+SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSL 242
>gi|297283615|ref|XP_001084714.2| PREDICTED: ERI1 exoribonuclease 2-like [Macaca mulatta]
gi|355710023|gb|EHH31487.1| ERI1 exoribonuclease 2 [Macaca mulatta]
Length = 690
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 93/211 (44%), Gaps = 55/211 (26%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKRHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQHMGVTPTNF-----------AVVT 79
++H QQ + T A VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H GLDDS N A L +++ G IT+SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSL 242
>gi|428181691|gb|EKX50554.1| hypothetical protein GUITHDRAFT_103781 [Guillardia theta CCMP2712]
Length = 656
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 90/186 (48%), Gaps = 38/186 (20%)
Query: 12 FDYFVVVDFEATCD-KKIPHPQEIIEFPSVIV-SGVTGQITVCFQIY---------ALFL 60
FDY VV+DFE TCD KK P EIIEFPSV+V + +I FQ A+ +
Sbjct: 26 FDYLVVLDFEWTCDNKKKLEPLEIIEFPSVLVRTSFPPKIVSEFQEMVDAGVHLEDAIEM 85
Query: 61 HDNWQQHMGVTP------TNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRV-- 112
H W + G+ P + F VTWSD D L SE I +PSYFN WINL+V
Sbjct: 86 HRQWLEQHGLLPAEGAASSTFTFVTWSDADIMFALHSEFSRLKIARPSYFNNWINLKVSL 145
Query: 113 ---PFS-------------KGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVIM 153
P S K D L+ VE + + GR H GL DS N A ++ ++
Sbjct: 146 PSLPHSLLSRQQLLYKSHFKKDAVGGLQACVERLGISFQGRAHSGLVDSRNTAAIVMKML 205
Query: 154 QRGFKF 159
GF+F
Sbjct: 206 NEGFQF 211
>gi|383415517|gb|AFH30972.1| ERI1 exoribonuclease 2 isoform 1 [Macaca mulatta]
Length = 690
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 93/211 (44%), Gaps = 55/211 (26%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKRHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQHMGVTPTNF-----------AVVT 79
++H QQ + T A VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H GLDDS N A L +++ G IT+SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSL 242
>gi|194756028|ref|XP_001960281.1| GF13284 [Drosophila ananassae]
gi|190621579|gb|EDV37103.1| GF13284 [Drosophila ananassae]
Length = 284
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 102/223 (45%), Gaps = 54/223 (24%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIY-------- 56
+Q + Y + VDFEATC +K PQ EIIEFP+V+V+ TG+I F Y
Sbjct: 62 MQPYTYVIAVDFEATCWEKQAPPQWREAEIIEFPAVLVNLKTGKIEAEFHKYIMPIESPR 121
Query: 57 ------------------------ALFLHDNW-------------QQHMGVTPTNFAVVT 79
AL + W + + N A VT
Sbjct: 122 LSTYCTELTGIQQKTVDGGVPLQTALMMFHEWLRKELRARNLTLPKMNKSNVLGNCAFVT 181
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-SKGDVR-CNLKEA---VELGWHGR 134
W+DWD + L EC K + K +YFN+WI++R + S R CN +A V L + GR
Sbjct: 182 WTDWDFGICLAKECTRKRMRKAAYFNQWIDVRAIYRSWYKYRPCNFSDALSHVGLAFEGR 241
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
H G+DD+ N+ L+ ++ G FSITK LT Q + + V+
Sbjct: 242 AHSGIDDAKNLGALMCKMVSDGALFSITKDLTPYQQLNANCVL 284
>gi|402907864|ref|XP_003916681.1| PREDICTED: LOW QUALITY PROTEIN: ERI1 exoribonuclease 2 [Papio
anubis]
Length = 690
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 96/211 (45%), Gaps = 55/211 (26%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKRHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQH-----MGVT-PTNFAV-----VT 79
++H QQ GV+ P+ V VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H GLDDS N A L +++ G IT+SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSL 242
>gi|332845434|ref|XP_003315045.1| PREDICTED: ERI1 exoribonuclease 2 isoform 3 [Pan troglodytes]
gi|397481790|ref|XP_003812120.1| PREDICTED: ERI1 exoribonuclease 2 isoform 2 [Pan paniscus]
Length = 328
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 104/242 (42%), Gaps = 59/242 (24%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQHMGVTPTNF-----------AVVT 79
++H QQ + T A VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSASEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDI----TQDSVMTWNRHHQFLVRQR 190
H GLDDS N A L +++ G IT+SL + T +S + H FL ++
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSLNKGPFLLPSWTWNSDLASGDQHAFLQQEF 271
Query: 191 KC 192
C
Sbjct: 272 GC 273
>gi|24657520|ref|NP_726149.1| snipper, isoform F [Drosophila melanogaster]
gi|24657528|ref|NP_726150.1| snipper, isoform E [Drosophila melanogaster]
gi|10727027|gb|AAF46791.2| snipper, isoform E [Drosophila melanogaster]
gi|21626519|gb|AAM68200.1| snipper, isoform F [Drosophila melanogaster]
Length = 223
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 104/223 (46%), Gaps = 54/223 (24%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIY-------- 56
+Q + Y + VDFEATC +K P+ EIIEFP+V+V+ TG+I F Y
Sbjct: 1 MQPYSYVIAVDFEATCWEKQAPPEWREAEIIEFPAVLVNLKTGKIEAEFHQYILPFESPR 60
Query: 57 ------------------------ALFLHDNW-------------QQHMGVTPTNFAVVT 79
A+ + + W + + N A VT
Sbjct: 61 LSAYCTELTGIQQKTVDSGMPLRTAIVMFNEWLRNEMRARNLTLPKMNKSNILGNCAFVT 120
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-SKGDVR-CNLKEA---VELGWHGR 134
W+DWD + L EC K I KP+YFN+WI++R + S R CN +A V L + G+
Sbjct: 121 WTDWDFGICLAKECSRKGIRKPAYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGK 180
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
H G+DD+ N+ L+ +++ G FSITK LT Q + V+
Sbjct: 181 AHSGIDDAKNLGALMCKMVRDGALFSITKDLTPYQQLNPRFVL 223
>gi|218505680|ref|NP_001136197.1| ERI1 exoribonuclease 2 isoform 1 [Homo sapiens]
gi|190359336|sp|A8K979.2|ERI2_HUMAN RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
domain-containing protein 1
gi|119587241|gb|EAW66837.1| similar to RIKEN cDNA 4933424N09 gene, isoform CRA_b [Homo sapiens]
Length = 691
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 93/211 (44%), Gaps = 55/211 (26%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQHMGVTPTNF-----------AVVT 79
++H QQ + T A VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H GLDDS N A L +++ G IT+SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSL 242
>gi|195486290|ref|XP_002091443.1| GE12237 [Drosophila yakuba]
gi|194177544|gb|EDW91155.1| GE12237 [Drosophila yakuba]
Length = 223
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 103/223 (46%), Gaps = 54/223 (24%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIY-------- 56
+Q + Y + VDFEATC +K PQ EIIEFP+V+V+ TG+I F Y
Sbjct: 1 MQPYTYVIAVDFEATCWEKQAPPQWREAEIIEFPAVLVNLKTGKIEAEFHKYILPFESPR 60
Query: 57 ------------------------ALFLHDNW-------------QQHMGVTPTNFAVVT 79
AL + W + + N A VT
Sbjct: 61 LSTYCTELTGIQQKTVDSGVPLQTALMMFHEWLRKELRARNLTLPKMNKSNILGNCAFVT 120
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-SKGDVR-CNLKEA---VELGWHGR 134
W+DWD + L EC K + K +YFN+WI++R + S R CN +A V L + GR
Sbjct: 121 WTDWDFGICLAKECTRKRMRKAAYFNQWIDVRAIYRSWYQYRPCNFTDALSHVGLAFEGR 180
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
H G+DD+ N+ L+ +++ G FSITK LT Q + + V+
Sbjct: 181 AHSGIDDAKNLGALMCKMVRDGALFSITKDLTPYQQLNPNCVL 223
>gi|403277084|ref|XP_003930207.1| PREDICTED: ERI1 exoribonuclease 2 [Saimiri boliviensis boliviensis]
Length = 690
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 100/226 (44%), Gaps = 55/226 (24%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI------------------ 49
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI
Sbjct: 32 QLFDYLIVIDFESTCWNDGKRHHSQEIIEFPAVLLNTSTGQIESEFHAYVQPQEQPILSE 91
Query: 50 -------------------TVCFQIYALFLHDNWQQH-----MGVT-PTNFAV-----VT 79
+C + ++H QQ GV+ P+ V VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKKIIFAAGVSEPSTSEVNLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRSTYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWN 180
H GLDDS N A L +++ G IT+SL S++ N
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCLMKITRSLNKVPTKKNSSILARN 257
>gi|34534279|dbj|BAC86956.1| unnamed protein product [Homo sapiens]
Length = 279
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 93/212 (43%), Gaps = 55/212 (25%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQHMGVTPTNF-----------AVVT 79
++H QQ + T A VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLT 166
H GLDDS N A L +++ G IT+SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSLN 243
>gi|395730614|ref|XP_003780607.1| PREDICTED: LOW QUALITY PROTEIN: ERI1 exoribonuclease 3 [Pongo
abelii]
Length = 316
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 88/195 (45%), Gaps = 42/195 (21%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I +Y
Sbjct: 118 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTXHMYVQPVVHPQLTPFC 177
Query: 58 ----------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESEC 93
L D W G+ N VT DWD +VML +C
Sbjct: 178 TELTGIIQAMVEMDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQC 237
Query: 94 RFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
++ +P YF +WINL+ +S + ++ + + L GR H G+DD NIA
Sbjct: 238 QYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIAN 297
Query: 148 LLAVIMQRGFKFSIT 162
++ + RGF F T
Sbjct: 298 IMKTLAYRGFIFKQT 312
>gi|195027065|ref|XP_001986404.1| GH20546 [Drosophila grimshawi]
gi|193902404|gb|EDW01271.1| GH20546 [Drosophila grimshawi]
Length = 288
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 100/223 (44%), Gaps = 54/223 (24%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIY-------- 56
+Q F Y + VDFEATC +K PQ EIIEFP+V+V+ TG+I F Y
Sbjct: 66 MQPFSYVIAVDFEATCWEKQAPPQWREAEIIEFPAVLVNLKTGKIEAEFHKYIMPFESPR 125
Query: 57 ------------------------ALFLHDNW-------------QQHMGVTPTNFAVVT 79
AL + W + N A VT
Sbjct: 126 LSTYCTELTGIDQKTVDSGVPLQTALMMFHEWLRKELRARNLLLPKMAKSNILGNCAFVT 185
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEA---VELGWHGR 134
W+DWD + L EC K + K YFN+WI++R + + CN +A V L + GR
Sbjct: 186 WTDWDFGICLHKECSRKRMRKAPYFNQWIDVRAIYREWYKYRPCNFTDALSHVGLAFEGR 245
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
H G+DD+ N+ L+ +++ G FSITK LT Q + + V+
Sbjct: 246 AHSGIDDAKNLGALMCKMVRDGALFSITKDLTPYQQLNPNCVL 288
>gi|195382354|ref|XP_002049895.1| GJ21843 [Drosophila virilis]
gi|194144692|gb|EDW61088.1| GJ21843 [Drosophila virilis]
Length = 286
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 100/223 (44%), Gaps = 54/223 (24%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIY-------- 56
+Q F Y + VDFEATC +K PQ EIIEFP+V+V+ TG+I F Y
Sbjct: 64 MQPFSYVIAVDFEATCWEKQAPPQWREAEIIEFPAVLVNLKTGKIEAEFHKYIMPIESPR 123
Query: 57 ------------------------ALFLHDNW-------------QQHMGVTPTNFAVVT 79
AL + W + N A VT
Sbjct: 124 LSTYCTELTGIEQKTVDTGVPLQTALMMFHEWLRKELRARNLLLPKMSKSNILGNCAFVT 183
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEA---VELGWHGR 134
W+DWD + L EC K + K YFN+WI++R + + CN +A V L + GR
Sbjct: 184 WTDWDFGICLHKECTRKRMRKAPYFNQWIDVRAVYREWYKYRPCNFSDALSHVGLAFEGR 243
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
H G+DD+ N+ L+ +++ G FSITK LT Q + + V+
Sbjct: 244 AHSGIDDAKNLGALMCKMVRDGALFSITKDLTPYQQLNPNCVL 286
>gi|221330522|ref|NP_726151.2| snipper, isoform G [Drosophila melanogaster]
gi|159884093|gb|ABX00725.1| IP11159p [Drosophila melanogaster]
gi|220902332|gb|AAM68201.2| snipper, isoform G [Drosophila melanogaster]
Length = 384
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 54/217 (24%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIY-------- 56
+Q + Y + VDFEATC +K P+ EIIEFP+V+V+ TG+I F Y
Sbjct: 162 MQPYSYVIAVDFEATCWEKQAPPEWREAEIIEFPAVLVNLKTGKIEAEFHQYILPFESPR 221
Query: 57 ------------------------ALFLHDNW-------------QQHMGVTPTNFAVVT 79
A+ + + W + + N A VT
Sbjct: 222 LSAYCTELTGIQQKTVDSGMPLRTAIVMFNEWLRNEMRARNLTLPKMNKSNILGNCAFVT 281
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-SKGDVR-CNLKEA---VELGWHGR 134
W+DWD + L EC K I KP+YFN+WI++R + S R CN +A V L + G+
Sbjct: 282 WTDWDFGICLAKECSRKGIRKPAYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGK 341
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDI 171
H G+DD+ N+ L+ +++ G FSITK LT Q +
Sbjct: 342 AHSGIDDAKNLGALMCKMVRDGALFSITKDLTPYQQL 378
>gi|332845432|ref|XP_003315044.1| PREDICTED: ERI1 exoribonuclease 2 isoform 2 [Pan troglodytes]
gi|397481788|ref|XP_003812119.1| PREDICTED: ERI1 exoribonuclease 2 isoform 1 [Pan paniscus]
Length = 279
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 93/212 (43%), Gaps = 55/212 (25%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQHMGVTPTNF-----------AVVT 79
++H QQ + T A VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSASEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLT 166
H GLDDS N A L +++ G IT+SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSLN 243
>gi|28573607|ref|NP_611632.3| snipper, isoform D [Drosophila melanogaster]
gi|16769080|gb|AAL28759.1| LD16074p [Drosophila melanogaster]
gi|28380656|gb|AAM68199.2| snipper, isoform D [Drosophila melanogaster]
gi|220943044|gb|ACL84065.1| CG42257-PD [synthetic construct]
gi|220953182|gb|ACL89134.1| CG42257-PD [synthetic construct]
Length = 281
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 104/223 (46%), Gaps = 54/223 (24%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIY-------- 56
+Q + Y + VDFEATC +K P+ EIIEFP+V+V+ TG+I F Y
Sbjct: 59 MQPYSYVIAVDFEATCWEKQAPPEWREAEIIEFPAVLVNLKTGKIEAEFHQYILPFESPR 118
Query: 57 ------------------------ALFLHDNW-------------QQHMGVTPTNFAVVT 79
A+ + + W + + N A VT
Sbjct: 119 LSAYCTELTGIQQKTVDSGMPLRTAIVMFNEWLRNEMRARNLTLPKMNKSNILGNCAFVT 178
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-SKGDVR-CNLKEA---VELGWHGR 134
W+DWD + L EC K I KP+YFN+WI++R + S R CN +A V L + G+
Sbjct: 179 WTDWDFGICLAKECSRKGIRKPAYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGK 238
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
H G+DD+ N+ L+ +++ G FSITK LT Q + V+
Sbjct: 239 AHSGIDDAKNLGALMCKMVRDGALFSITKDLTPYQQLNPRFVL 281
>gi|432094495|gb|ELK26058.1| ERI1 exoribonuclease 3, partial [Myotis davidii]
Length = 333
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 88/193 (45%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK PQEIIEFP + ++G T +I F +Y
Sbjct: 137 QRYHYFLVLDFEATCDKPQIQPQEIIEFPILKLNGRTMEIESTFHMYVQPVIHPQLTPFC 196
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD ++ML +C++
Sbjct: 197 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKIMLPGQCQY 256
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 257 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 316
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 317 KTLAYRGFIFKQT 329
>gi|195346611|ref|XP_002039851.1| GM15878 [Drosophila sechellia]
gi|194135200|gb|EDW56716.1| GM15878 [Drosophila sechellia]
Length = 281
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 103/217 (47%), Gaps = 54/217 (24%)
Query: 9 LQDFDYFVVVDFEATC--DKKIPH--PQEIIEFPSVIVSGVTGQITVCFQIY-------- 56
+Q + Y + VDFEATC ++ PH EIIEFP+V+V+ TG+I F Y
Sbjct: 59 MQPYSYVIAVDFEATCWENQAPPHWREAEIIEFPAVLVNLKTGKIEAEFHQYILPIESPR 118
Query: 57 ------------------------ALFLHDNW------QQHMGVTPTNF-------AVVT 79
A+ + W +++ + TN A VT
Sbjct: 119 LSTYCTELTGIQQKTVDSGIPLQTAMVMFHEWLRNEMRARNLTLPKTNKSNILGNCAFVT 178
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-SKGDVR-CNLKEA---VELGWHGR 134
W+DWD + L EC K I K +YFN+WI++R + S R CN +A V L + GR
Sbjct: 179 WTDWDFGICLAKECNRKGIRKAAYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGR 238
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDI 171
H G+DD+ N+ L+ +M+ G FSITK LT Q +
Sbjct: 239 AHSGIDDAKNLGALMCKMMRDGALFSITKDLTPYQQL 275
>gi|440791054|gb|ELR12308.1| exonuclease [Acanthamoeba castellanii str. Neff]
Length = 277
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 95/211 (45%), Gaps = 59/211 (27%)
Query: 14 YFVVVDFEATCDKKIP---HPQEIIEFPSVIVSGVTGQITVCFQIYALFL---------- 60
YFVV+D EATCD+ +PQEIIEF +V+ S T ++ FQ+Y L
Sbjct: 63 YFVVLDLEATCDEDWNRNFYPQEIIEFSAVLWSTATHEVEDTFQVYVKPLVHPVLTPFCH 122
Query: 61 -----HDNW------------------QQH---MGVTPTN--------------FAVVTW 80
H W ++H + PT+ F + TW
Sbjct: 123 HLTGIHQEWVDNGASLQECLQMFHEWLERHDLLLAPRPTSTMPASTSITTTSSAFWLATW 182
Query: 81 SDWDCQVMLESECRFKNIPKPSYFNRWINLR---VPFSKGDVRCNLKEAVE---LGWHGR 134
SDWD MLE++C + K YFN+W++L+ + + R L EAV LGW G
Sbjct: 183 SDWDLGTMLEAQCIRTCLDKEPYFNQWVDLKQLYMRYYSKKFRVKLSEAVASLGLGWEGA 242
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
HC LDD N +RLL I++ G +T +L
Sbjct: 243 EHCALDDCRNTSRLLGKIIEHGHPVYLTSAL 273
>gi|195154276|ref|XP_002018048.1| GL16972 [Drosophila persimilis]
gi|198460377|ref|XP_002138824.1| GA25009 [Drosophila pseudoobscura pseudoobscura]
gi|194113844|gb|EDW35887.1| GL16972 [Drosophila persimilis]
gi|198136995|gb|EDY69382.1| GA25009 [Drosophila pseudoobscura pseudoobscura]
Length = 221
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 100/217 (46%), Gaps = 54/217 (24%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIYAL------ 58
+Q + Y + VDFEATC +K PQ EIIEFP+V+V+ TG++ F Y +
Sbjct: 1 MQPYTYAISVDFEATCWEKQAPPQWRESEIIEFPAVLVNLKTGKVEAEFHTYVMPLESPR 60
Query: 59 -------------------------------FLHDNWQQHMGVTPT--------NFAVVT 79
+L + + V P N A VT
Sbjct: 61 LSNYCTELTGIQQKTVEAGVPLQTALNLFCEWLRNELRVRNLVLPKTNKSNILGNCAFVT 120
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDVR--CNLKEA---VELGWHGR 134
W+DWD + L EC K I KP+ FN+WI+ R + + CN +A V+L + GR
Sbjct: 121 WTDWDFGICLAKECTRKRIRKPACFNQWIDARAIYREWYKYRPCNFADALSHVDLAFEGR 180
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDI 171
H G+DD+ N+ L+ +++ G FSITK LT Q +
Sbjct: 181 AHSGIDDAKNLGALICKMVRDGALFSITKDLTPYQQL 217
>gi|158253677|gb|AAI54112.1| LOC100127672 protein [Xenopus (Silurana) tropicalis]
Length = 272
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F Y
Sbjct: 76 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHPQLTPFC 135
Query: 58 --------------------LFLHDNWQQHMGVT-PTNFAV-VTWSDWDCQVMLESECRF 95
L D W G+ P+ ++ VT DWD ++ML +C +
Sbjct: 136 TELTGIIQDMVDGQPTLSQVLERVDEWMAKEGLLDPSVKSIFVTCGDWDLKLMLPGQCEY 195
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+ YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 196 LGLQVADYFKQWINLKKAYSFAIGTWPKNGLLDMNKGMSLQHIGRPHSGIDDCRNIANIM 255
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 256 KTLAHRGFIFKQT 268
>gi|194771098|ref|XP_001967613.1| GF13954 [Drosophila ananassae]
gi|190622727|gb|EDV38251.1| GF13954 [Drosophila ananassae]
Length = 282
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 102/226 (45%), Gaps = 54/226 (23%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIY----- 56
P +Q + Y + VDFEATC +K PQ EIIE P+V+V+ TG+I F Y
Sbjct: 57 PLAMQPYTYVIAVDFEATCWEKQAPPQWREAEIIECPAVLVNLKTGKIEAEFHKYIMPIE 116
Query: 57 ---------------------------ALFLHDNW-------------QQHMGVTPTNFA 76
AL + W + + N A
Sbjct: 117 SPRLSTYCTELTGFQQKTGDGEVPLQTALMMFHEWLRKELRARNLTLPKMNKSDVLGNCA 176
Query: 77 VVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLR-VPFSKGDVR-CNLKEA---VELGW 131
VTW+DWD + L EC K + K SYFN+WI++R + S R CN +A V L +
Sbjct: 177 FVTWTDWDFGICLAKECTRKRMRKASYFNQWIDVRAINRSWYKYRPCNFSDALSHVGLAF 236
Query: 132 HGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
GR H G+DD+ N+ L+ ++ G FSITK LT Q + + V+
Sbjct: 237 EGRAHWGIDDAKNLGALMCKMVIDGALFSITKDLTPYQQLNANCVL 282
>gi|195431874|ref|XP_002063953.1| GK15944 [Drosophila willistoni]
gi|194160038|gb|EDW74939.1| GK15944 [Drosophila willistoni]
Length = 281
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 101/223 (45%), Gaps = 54/223 (24%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIY-------- 56
+Q + Y + VDFEATC +K PQ EIIEFP+V+V+ TG++ F Y
Sbjct: 59 MQPYSYVIAVDFEATCWEKQAPPQWREAEIIEFPAVLVNLKTGKVEAEFHKYIMPIESPR 118
Query: 57 ------------------------ALFLHDNW-----QQHMGVTPT--------NFAVVT 79
AL + W + V P N A VT
Sbjct: 119 LSSYCTELTGIQQKTVDNGIPLQTALMMFHEWLRKELRARNLVLPKMSKSNILGNCAFVT 178
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEA---VELGWHGR 134
W+DWD + L EC K + K YFN+WI++R + + CN +A V L + GR
Sbjct: 179 WTDWDFGICLAKECSRKRMRKAVYFNQWIDVRAIYREWYKYRPCNFSDALAHVGLAFEGR 238
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
H G+DD+ N+ L +++ G F+ITK LT Q + + V+
Sbjct: 239 AHSGIDDAKNLGSLTCKMVRDGALFAITKDLTPYQQLNPNCVL 281
>gi|146327084|gb|AAI41731.1| LOC100049744 protein [Xenopus laevis]
Length = 273
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F Y
Sbjct: 77 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHPQLTPFC 136
Query: 58 --------------------LFLHDNWQQHMGVT-PTNFAV-VTWSDWDCQVMLESECRF 95
L D W G+ P+ ++ VT DWD ++ML +C +
Sbjct: 137 TELTGIIQDMVDGQPTLSQVLERVDEWMAKEGLLDPSVKSIFVTCGDWDLKLMLPGQCEY 196
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+ YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 197 LGLQVADYFKQWINLKKAYSFAIGTWPKNGLLDMNKGMSLQHIGRPHSGIDDCRNIANIM 256
Query: 150 AVIMQRGFKFSIT 162
+ RGF F T
Sbjct: 257 KTLAHRGFIFKQT 269
>gi|170053941|ref|XP_001862902.1| exonuclease [Culex quinquefasciatus]
gi|167874372|gb|EDS37755.1| exonuclease [Culex quinquefasciatus]
Length = 369
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 95/210 (45%), Gaps = 55/210 (26%)
Query: 10 QDFDYFVVVDFEATC----DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA-------- 57
Q F Y VV+DFEATC D K EIIEFP+V+++ VTGQ+ FQ +
Sbjct: 153 QTFRYLVVMDFEATCWPEQDMKW-KTHEIIEFPAVLLNMVTGQVEAQFQQFVMPVENPRL 211
Query: 58 ------------------------LFLHDNWQQHM-------------GVTPTNFAVVTW 80
L L W + + G + A TW
Sbjct: 212 SEFCTKLTGIRQDQVEGGVPLKTCLPLFGKWLKQVLGERGLVLPKTDPGNQSGSVAFATW 271
Query: 81 SDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHGRV 135
SDWD L EC K I KP+ F++WI++R + K N EA++ LG+ GR
Sbjct: 272 SDWDFGKCLSKECTRKRIEKPACFDQWIDVRAIYMKFYQHRPLNFGEALDKRGLGFEGRP 331
Query: 136 HCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H GLDDS N+ARL+ + + G F ITK L
Sbjct: 332 HSGLDDSKNLARLITRMCKDGANFVITKDL 361
>gi|170051987|ref|XP_001862016.1| 3' histone mRNA exonuclease 1 [Culex quinquefasciatus]
gi|167872972|gb|EDS36355.1| 3' histone mRNA exonuclease 1 [Culex quinquefasciatus]
Length = 260
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 95/210 (45%), Gaps = 55/210 (26%)
Query: 10 QDFDYFVVVDFEATC----DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA-------- 57
Q F Y VV+DFEATC D K EIIEFP+V+++ VTGQ+ FQ +
Sbjct: 44 QTFRYLVVMDFEATCWPEQDMKW-KTHEIIEFPAVLLNMVTGQVEAQFQQFVMPVENPRL 102
Query: 58 ------------------------LFLHDNWQQHM-------------GVTPTNFAVVTW 80
L L W + + G + A TW
Sbjct: 103 SEFCTKLTGIRQDQVEGGVPLKTCLPLFGKWLKQVLGERGLVLPKTDPGNQSGSVAFATW 162
Query: 81 SDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHGRV 135
SDWD L EC K I KP+ F++WI++R + K N EA++ LG+ GR
Sbjct: 163 SDWDFGKCLSKECTRKRIEKPACFDQWIDVRAIYMKFYQHRPLNFGEALDKRGLGFEGRP 222
Query: 136 HCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H GLDDS N+ARL+ + + G F ITK L
Sbjct: 223 HSGLDDSKNLARLITRMCKDGANFVITKDL 252
>gi|390361519|ref|XP_781221.3| PREDICTED: ERI1 exoribonuclease 3-like [Strongylocentrotus
purpuratus]
Length = 268
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 90/196 (45%), Gaps = 43/196 (21%)
Query: 10 QDFDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------ 56
QDFDYF+V+DFEATC D + PQE+IEFP + VSG T + F Y
Sbjct: 74 QDFDYFLVLDFEATCLDNERIEPQEVIEFPVLKVSGKTFETEATFHQYVEPQVHGVGEFC 133
Query: 57 -------------------ALFLHDNWQQHMGVT--PTNFAVVTWSDWDCQVMLESECRF 95
L L W + G+ F VT DWD + M S+C
Sbjct: 134 TRLTGITPDMVKGQPTFADTLKLFHVWMEKEGLVDPEVKFIFVTCGDWDLKTMFPSQCAH 193
Query: 96 KNIPKPSYFNRWINLRVPFS-------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+P SYF RW+N++ F+ KG ++ + E + + GR H G+DD NIA +
Sbjct: 194 FELPYHSYFRRWLNIKKAFATVTSHYPKGMMQ--MLERLNIPHVGRHHSGIDDCRNIANI 251
Query: 149 LAVIMQRGFKFSITKS 164
L + + +KF T S
Sbjct: 252 LQALALKRYKFKQTGS 267
>gi|195122902|ref|XP_002005949.1| GI18816 [Drosophila mojavensis]
gi|193911017|gb|EDW09884.1| GI18816 [Drosophila mojavensis]
Length = 223
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 104/223 (46%), Gaps = 54/223 (24%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIY-------- 56
+Q F + + VDFEATC +K PQ EIIEFP+V+V+ TG+I F Y
Sbjct: 1 MQPFSHVIAVDFEATCWEKQAPPQWREAEIIEFPAVLVNLKTGKIESEFHKYVMPIESPR 60
Query: 57 ------------------------ALFLHDNW------QQHMGVTPT-------NFAVVT 79
AL + W +++ + T N A VT
Sbjct: 61 LSTYCTELTGIEQKTVDTGVPLQTALMMFHEWLRKELRSRNLILPKTSKSNLLGNCAFVT 120
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEA---VELGWHGR 134
W+DWD + L EC K + K YFN+W+++R + + CN +A V L + GR
Sbjct: 121 WTDWDFGICLHKECTRKRMRKAPYFNQWVDVRAIYREWYKYRPCNFSDALSHVGLAFEGR 180
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
H G+DD+ N+ L+ +++ G FSITK LT Q + + ++
Sbjct: 181 AHSGIDDAKNLGALMYKMVRDGALFSITKDLTPYQTLNPNCIL 223
>gi|344294294|ref|XP_003418853.1| PREDICTED: ERI1 exoribonuclease 2 [Loxodonta africana]
Length = 684
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 94/211 (44%), Gaps = 55/211 (26%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI------------------ 49
Q FDY +V+DFE+TC D K H QEIIEFP+ +++ TG+I
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAALLNTSTGEIESEFHAFVQPQEHPLLSE 91
Query: 50 -------------------TVCFQIYALFLHDNWQQHM------GVTPTNFAV-----VT 79
+C + ++H QQ + P++ V VT
Sbjct: 92 FCMELTGIKQVQVDEGVPLKICLSQFCKWIHKIQQQKKIFFATEVLDPSSSKVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYKRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H GLDDS N A L +++ G IT+SL
Sbjct: 212 EHSGLDDSRNTAHLAWKMIRDGCLMKITRSL 242
>gi|291390710|ref|XP_002711856.1| PREDICTED: exoribonuclease 2 [Oryctolagus cuniculus]
Length = 689
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 101/226 (44%), Gaps = 55/226 (24%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI------------------ 49
Q F Y +V+DFE+TC D K H QEIIEFP+V+++ TG+I
Sbjct: 32 QLFQYLIVIDFESTCWNDGKHHHNQEIIEFPAVLLNTSTGEIESEFHTYVQPQEHPILSE 91
Query: 50 -------------------TVCFQIYALFLHDNWQQH-----MGVT-PTNFAV-----VT 79
+C + ++H QQ GV+ P++ V VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKKIVFSTGVSEPSSSEVQPCTFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWN 180
H GLDDS N A L +++ G IT+SL +++T N
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCLMKITRSLNKVPTKKNPNILTRN 257
>gi|354499797|ref|XP_003511992.1| PREDICTED: ERI1 exoribonuclease 2 [Cricetulus griseus]
Length = 687
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 95/218 (43%), Gaps = 54/218 (24%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI---------- 49
NP + Q +DY +V+DFE+TC D K + EIIEFP+V++S TG+I
Sbjct: 24 NPGGSRFRQVYDYLIVIDFESTCWKDGKHHNSPEIIEFPAVLLSTATGEIESEFHAYVQP 83
Query: 50 ---------------------------TVCFQIYALFLHDNWQQHMGVTPTNF------- 75
+C + ++H QQ + T
Sbjct: 84 QEHPVLSEFCTELTGIKQVQVDEGVPLKICLSQFCKWIHKIQQQKKIILATGDLEPSTEV 143
Query: 76 ---AVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAV 127
A VTWSDWD V LE ECR K + KP + N WI+LR + K + V
Sbjct: 144 KLCAFVTWSDWDLGVCLEYECRRKQLLKPVFLNSWIDLRATYKLFYKRKPKGLSGALQEV 203
Query: 128 ELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
+ + GR H GLDDS N A L +++ G IT+SL
Sbjct: 204 GIEFSGREHSGLDDSRNTALLAWKMIRDGCLMKITRSL 241
>gi|395514593|ref|XP_003761499.1| PREDICTED: ERI1 exoribonuclease 2 [Sarcophilus harrisii]
Length = 685
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 94/215 (43%), Gaps = 63/215 (29%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQ------------- 54
Q FDY +++DFE+TC D K + QEIIEFP+V+++ +TG+I FQ
Sbjct: 33 QLFDYLIIIDFESTCWNDGKRHYSQEIIEFPAVLLNTLTGEIESEFQTYVQPEEHPVLSK 92
Query: 55 ---------------------------------------IYALFLHDNWQQHMGVTPTNF 75
I+A + DN + +
Sbjct: 93 FCVELTGIKQAQVDEGVPLKICLSQFCKWIQVIQQQKKIIFAPSVRDNSASDVKLC---- 148
Query: 76 AVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELG 130
A VTWSDWD V LE ECR K + KP + N W++LR + K + + +
Sbjct: 149 AFVTWSDWDLGVCLEYECRRKQLRKPVFLNSWVDLRATYKIFYRRKPKGLSGALQELGIE 208
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
+ GR H GLDDS N A L +++ G ITKSL
Sbjct: 209 FSGREHSGLDDSRNTAHLAWRMIRDGCIMKITKSL 243
>gi|126334116|ref|XP_001366655.1| PREDICTED: ERI1 exoribonuclease 2 [Monodelphis domestica]
Length = 696
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 96/211 (45%), Gaps = 55/211 (26%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI------------------ 49
Q FDY +++DFE+TC D K + QEIIEFP+V+++ +TG+I
Sbjct: 33 QLFDYLIIIDFESTCWNDGKHHYSQEIIEFPAVLLNTLTGEIESEFQTYVQPEEHPILSK 92
Query: 50 -------------------TVCFQIYALFLHDNWQQH-MGVTPT----------NFAVVT 79
+C + ++H QQ + P+ + A VT
Sbjct: 93 FCIELTGIKQAQVDEGVPLKICLSQFCKWIHLIQQQKKITFAPSITNNSASEVKSCAFVT 152
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE ECR K + KP + N WI+LR + K + + + + GR
Sbjct: 153 WSDWDLGVCLEYECRRKQLRKPIFLNSWIDLRATYKLFYRRKPKGLSGALQELGIEFSGR 212
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H GLDDS N A L +++ G ITKSL
Sbjct: 213 EHSGLDDSRNTAHLAWRMIRDGCIMKITKSL 243
>gi|443697836|gb|ELT98134.1| hypothetical protein CAPTEDRAFT_225969 [Capitella teleta]
Length = 212
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 93/200 (46%), Gaps = 43/200 (21%)
Query: 8 KLQDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQITVCFQIYA--------- 57
K Q+FDYF+V+DFEATCD K+ PQEIIEFP + V+ T ++ F Y
Sbjct: 14 KEQNFDYFLVLDFEATCDDKVQVDPQEIIEFPVLKVNAKTFEVESTFHQYVEPRVHKQLS 73
Query: 58 -----------------------LFLHDNWQQHMGV--TPTNFAVVTWSDWDCQVMLESE 92
L W Q G+ F VT DWD + ML S+
Sbjct: 74 PFCVELTGIIQDMVDGQQHLEAVLGDFQKWMQDEGLLNEGVKFIFVTCGDWDLKKMLPSQ 133
Query: 93 CRFKNIPKPSYFNRWINLRVPFS-------KGDVRCNLKEAVELGWHGRVHCGLDDSMNI 145
++ +I P + WIN++ PF+ K D+ + + + + GR H G+DD NI
Sbjct: 134 AKYFDIAYPDHMKSWINIKRPFTDVVGQYPKNDM-MEMLQKLNIAHTGRHHSGIDDCKNI 192
Query: 146 ARLLAVIMQRGFKFSITKSL 165
A++L I +G+ F T SL
Sbjct: 193 AKILRGIALKGYCFRCTLSL 212
>gi|348584174|ref|XP_003477847.1| PREDICTED: ERI1 exoribonuclease 2-like [Cavia porcellus]
Length = 690
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 95/211 (45%), Gaps = 55/211 (26%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI------------------ 49
Q +DY +V+DFE+TC D K + QEIIEFP+V+++ TG+I
Sbjct: 32 QLYDYIIVIDFESTCWNDGKHHNSQEIIEFPAVLLNTSTGEIESEFHTYVQPQEHPVLSE 91
Query: 50 -------------------TVCFQIYALFLHDNWQQH-----MGVTPTNF------AVVT 79
+C + ++H QQ G++ + A VT
Sbjct: 92 FCIELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKKIFFTTGISEPSTCEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H GLDDS N A L +++ G ITKSL
Sbjct: 212 EHSGLDDSRNTALLAWKMIKDGCLMKITKSL 242
>gi|390366041|ref|XP_790825.3| PREDICTED: ERI1 exoribonuclease 2-like [Strongylocentrotus
purpuratus]
Length = 631
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 52/213 (24%)
Query: 6 PQKLQDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL----- 58
P+ Q F Y +V+DFE+TC DKK QEIIEFP+V+++ TGQ+ FQ Y +
Sbjct: 29 PRTCQTFSYLIVIDFESTCWKDKKNTS-QEIIEFPAVLLNTTTGQLESEFQQYVMPDEHP 87
Query: 59 FLHDNWQQHMGVT--------------------------PTNFAV-------------VT 79
L D + G++ N A VT
Sbjct: 88 VLSDFCTELTGISQEQVENGVPLFICLNKFTSWLKKIESEKNLAYNRSTDDTRKLCTFVT 147
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGWHGR 134
WSDWD V L EC+ K + KPS N WI+ R + K + V + + GR
Sbjct: 148 WSDWDLSVCLRYECQRKQLYKPSALNHWIDARAVYRNFYQRKPKGLSGALQEVGIEFAGR 207
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTT 167
H GLDD+ N A L+ ++Q G F ITK++ +
Sbjct: 208 QHSGLDDAKNTAILVWRMIQDGCHFKITKTIQS 240
>gi|301784463|ref|XP_002927641.1| PREDICTED: ERI1 exoribonuclease 2-like [Ailuropoda melanoleuca]
Length = 679
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 96/226 (42%), Gaps = 55/226 (24%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQIT----------------- 50
Q FDY +V+DFE+TC D K QEIIEFP+V+++ TG+I
Sbjct: 32 QFFDYLIVIDFESTCWNDGKRHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSE 91
Query: 51 --------------------VCFQIYALFLHDNWQQHMGVTPTNF-----------AVVT 79
+C + ++ Q+ + T A VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLRICLSQFCKWIQKIQQEKKIIFATGIPDLPNAEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LRV + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYGRKPKGLSGALQEVGIEFLGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWN 180
H GLDDS N A L +++ G IT+SL SV+ N
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCLMKITRSLNKVPTKKNSSVLARN 257
>gi|281339701|gb|EFB15285.1| hypothetical protein PANDA_017444 [Ailuropoda melanoleuca]
Length = 672
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 96/226 (42%), Gaps = 55/226 (24%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQIT----------------- 50
Q FDY +V+DFE+TC D K QEIIEFP+V+++ TG+I
Sbjct: 25 QFFDYLIVIDFESTCWNDGKRHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSE 84
Query: 51 --------------------VCFQIYALFLHDNWQQHMGVTPTNF-----------AVVT 79
+C + ++ Q+ + T A VT
Sbjct: 85 FCMELTGIKQAQVDEGVPLRICLSQFCKWIQKIQQEKKIIFATGIPDLPNAEVKLCAFVT 144
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LRV + K + V + + GR
Sbjct: 145 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYGRKPKGLSGALQEVGIEFLGR 204
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWN 180
H GLDDS N A L +++ G IT+SL SV+ N
Sbjct: 205 EHSGLDDSRNTALLAWKMIRDGCLMKITRSLNKVPTKKNSSVLARN 250
>gi|427778455|gb|JAA54679.1| Putative exonuclease [Rhipicephalus pulchellus]
Length = 283
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 96/217 (44%), Gaps = 66/217 (30%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA---------- 57
Q +DYF+++DFEATC +K +P PQEIIEFP + V+G T + F Y
Sbjct: 67 QAYDYFLMLDFEATCSAEKGVPTPQEIIEFPVLKVNGRTFETESTFHTYVQPQAHPQLTA 126
Query: 58 ----------------------LFLHDNWQQHMGVT------------------PTNFAV 77
L D+W + G+ P+ A
Sbjct: 127 FCTELTGIVQDMVDDQPHLQEVLSRFDDWMREQGLLQARTVFITFGDWDLQKMLPSQCAY 186
Query: 78 ---------VTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEA 126
+T+ DWD Q ML S+C + IP P Y RWINL+ F++ G L +A
Sbjct: 187 LGXXARTVFITFGDWDLQKMLPSQCAYLGIPVPPYMTRWINLKRAFAECTGHWPKTLLDA 246
Query: 127 V---ELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFS 160
+ L GR H G+DD N+ +L+A + RG++F+
Sbjct: 247 LRFCRLPHLGRHHSGIDDCRNLTQLVAWLASRGYQFA 283
>gi|432119658|gb|ELK38559.1| ERI1 exoribonuclease 2 [Myotis davidii]
Length = 698
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 100/218 (45%), Gaps = 56/218 (25%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI---------- 49
+P LP K Q FDY +V+DFE+TC + K QEIIEFP+V+++ TG+I
Sbjct: 38 DPLLPPK-QLFDYLIVIDFESTCWEEGKRHRTQEIIEFPAVLLNTSTGEIESEFHAYVQP 96
Query: 50 ---------------------------TVCFQIYALFLHDNWQQH-----MGVT--PTNF 75
+C + ++ QQ GV+ PT+
Sbjct: 97 QEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKWIQKVQQQKKIIFATGVSDLPTSE 156
Query: 76 ----AVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEA 126
A VTWSDWD V LE EC+ K + KP + N WI+LRV + K +
Sbjct: 157 VKLCAFVTWSDWDLGVCLEYECKRKQLFKPVFLNAWIDLRVTYKIFYRRKPKGLSGALQE 216
Query: 127 VELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKS 164
V + + GR H GLDDS N A L +++ G IT+S
Sbjct: 217 VGIEFLGREHSGLDDSRNTALLAWKMIRDGCLMKITRS 254
>gi|330800009|ref|XP_003288032.1| hypothetical protein DICPUDRAFT_33426 [Dictyostelium purpureum]
gi|325081920|gb|EGC35419.1| hypothetical protein DICPUDRAFT_33426 [Dictyostelium purpureum]
Length = 231
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 94/212 (44%), Gaps = 47/212 (22%)
Query: 1 PNPFLPQKLQDFDYFVVVDFEATCDKKIPHP-QEIIEFPSVIVSGVTGQITVCFQIY--- 56
P + K Q F Y +V+DFEATC+K P QEIIEFPSVIV+ T +I F+ Y
Sbjct: 19 PTSSVEPKKQLFKYLIVLDFEATCEKDQKFPNQEIIEFPSVIVNTETLEIVSTFREYCKP 78
Query: 57 -----------------------------ALFLHDNWQQHM--------GVTPTNFAVVT 79
L H W + + VT
Sbjct: 79 LIVPKLTAFCTELTGIKQETVDNADLFPNVLKRHYQWLEESLPGVIVNGQIINDQICFVT 138
Query: 80 WSDWDCQVMLESECRF-KNIPKPSYFNRWINLRVPFSKGDVR-----CNLKEAVELGWHG 133
DWD + L+ + + NIP P+YF +WIN+++ F+ + N+ + L G
Sbjct: 139 CGDWDLRQCLQKQLKLCNNIPTPNYFKKWINIKLQFTDFYSKPSYGMTNMLRELNLELEG 198
Query: 134 RVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
R HCGL DS+NIAR++ ++ G F+I L
Sbjct: 199 RHHCGLSDSLNIARIVKKMLAAGCIFNIISKL 230
>gi|410917872|ref|XP_003972410.1| PREDICTED: ERI1 exoribonuclease 2-like [Takifugu rubripes]
Length = 359
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 102/219 (46%), Gaps = 68/219 (31%)
Query: 10 QDFDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQIT------------------ 50
Q F + +V+DFE+TC +K + QEIIEFP+V+++ TG++
Sbjct: 31 QIFSHLIVIDFESTCWREKNNYSQEIIEFPAVLLNACTGEVESEFHTYVQPQEHPTLSGF 90
Query: 51 -------------------VCFQIYALFLHDNWQQHMGVT-PTNFAV------------- 77
+C ++ +L N Q +MG+ P N +
Sbjct: 91 CTELTGITQMQVEAGIPLQICMSRFSRWLQ-NLQMNMGLVFPNNPQMASAAAASRNLCTF 149
Query: 78 VTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-------KGDVRCNLKEAVE-- 128
+TWSDWD V L+ ECR K I KP N WI+LR + KG LK A++
Sbjct: 150 LTWSDWDLGVCLQYECRRKQIHKPDVLNSWIDLRGTYRLFYDRKPKG-----LKGALQDL 204
Query: 129 -LGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLT 166
+ + GR H GLDD+ N A+L A +M+ G +T+SLT
Sbjct: 205 GIQFAGREHSGLDDARNTAQLAARMMRDGCVMKVTRSLT 243
>gi|281337568|gb|EFB13152.1| hypothetical protein PANDA_015995 [Ailuropoda melanoleuca]
Length = 365
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 96/228 (42%), Gaps = 71/228 (31%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------ 56
PF PQ+ + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 137 PFPPQR---YHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVH 193
Query: 57 --------------------------ALFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVM 88
L D W G+ N VT DWD +VM
Sbjct: 194 PQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVM 253
Query: 89 LESECRFKNIPKPSYFNRWINLR------VP----------FSKGDVRC----------- 121
L +C++ +P YF +WINL+ VP KG+ +
Sbjct: 254 LPGQCQYLGLPVADYFKQWINLKKVLKRGVPSGRTASLEEQAGKGESKSHCKKSSFAMGC 313
Query: 122 -------NLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
++ + + L GR H G+DD NIA ++ + +GF F T
Sbjct: 314 WPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYQGFIFKQT 361
>gi|355557931|gb|EHH14711.1| hypothetical protein EGK_00679 [Macaca mulatta]
Length = 365
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 88/221 (39%), Gaps = 68/221 (30%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 200
Query: 57 -------------------ALFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 201 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 260
Query: 96 KNIPKPSYFNRWINLRVPFSKGDVR----------------------------------C 121
+P YF +WINL+ S G
Sbjct: 261 LGLPVADYFKQWINLKKGSSPGAASGASCYQSKEAQRKENTPGVKAYSFAMGCWPKNGLL 320
Query: 122 NLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
++ + + L GR H G+DD NIA ++ + RGF F T
Sbjct: 321 DMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQT 361
>gi|355745231|gb|EHH49856.1| hypothetical protein EGM_00583 [Macaca fascicularis]
Length = 365
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 88/221 (39%), Gaps = 68/221 (30%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 200
Query: 57 -------------------ALFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 201 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 260
Query: 96 KNIPKPSYFNRWINLRVPFSKGDVR----------------------------------C 121
+P YF +WINL+ S G
Sbjct: 261 LGLPVADYFKQWINLKKGSSPGAASGASCYQSKEAQRKENTPGVKAYSFAMGCWPKNGLL 320
Query: 122 NLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
++ + + L GR H G+DD NIA ++ + RGF F T
Sbjct: 321 DMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQT 361
>gi|301604764|ref|XP_002932007.1| PREDICTED: ERI1 exoribonuclease 2 [Xenopus (Silurana) tropicalis]
Length = 693
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 99/216 (45%), Gaps = 58/216 (26%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIPHP-QEIIEFPSVIVSGVTGQITVCFQIYA------- 57
P+ Q F+Y +++DFE+TC K H QEIIEFP+V+++ G+I F Y
Sbjct: 29 PKARQFFEYLIIIDFESTCWKDGKHSTQEIIEFPAVLLNVANGEIESEFHTYVQPQEHPI 88
Query: 58 -------------------------LFLHDNW----QQHMGVT-----PTNFAV------ 77
L ++W Q+ G+ PT+ A
Sbjct: 89 LSEFCTELTGIKQLQVDNGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSAAEHKMCA 148
Query: 78 -VTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-------KGDVRCNLKEAVEL 129
VTWSDWD V L ECR K + KP N WI+LR + KG + L++ + +
Sbjct: 149 FVTWSDWDLGVCLLYECRRKQMKKPDILNSWIDLRATYKLFYNRRPKG-LNGALQD-LGI 206
Query: 130 GWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
+ GR H GLDDS N A+L +++ G ITKSL
Sbjct: 207 EFSGREHSGLDDSRNTAKLAWRMIRDGCVMKITKSL 242
>gi|156405487|ref|XP_001640763.1| predicted protein [Nematostella vectensis]
gi|156227899|gb|EDO48700.1| predicted protein [Nematostella vectensis]
Length = 277
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 92/186 (49%), Gaps = 39/186 (20%)
Query: 14 YFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYALFL----------- 60
Y+ V+DFEATC+K+ P + EIIEFP+V+V+ T +I FQ Y L
Sbjct: 87 YYCVIDFEATCEKENPEGYQHEIIEFPAVLVNAKTLEIEGEFQQYCKPLLKPRLTKFCQE 146
Query: 61 -----------HDN----------WQQHMGVTPTN-FAVVTWSDWDCQVMLESECRFKNI 98
DN W + G+ T+ FAVVT WD Q L ++C NI
Sbjct: 147 LTGISQETVDKSDNFPQVLDNFHIWLKERGIGTTHKFAVVTDGPWDIQRFLVTQCEICNI 206
Query: 99 PKPSYFNRWINLRVPFSK-GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVIMQ 154
P + ++INLR + ++C L E +E L + GR H GLDDS NIAR+L +++
Sbjct: 207 NLPKWSRKYINLRKHYRNFYKMKCKLSEMLENLGLEFEGRPHSGLDDSRNIARILIKMLK 266
Query: 155 RGFKFS 160
G S
Sbjct: 267 DGGDLS 272
>gi|432847752|ref|XP_004066132.1| PREDICTED: ERI1 exoribonuclease 2-like [Oryzias latipes]
Length = 504
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 107/251 (42%), Gaps = 62/251 (24%)
Query: 10 QDFDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQI------------------- 49
Q F Y +V+DFE+TC +K QEIIEFP+V+++ TG I
Sbjct: 30 QIFSYLIVIDFESTCWREKNTSSQEIIEFPAVLLNTSTGDIDSEFHTFVQPQEHPTLSEF 89
Query: 50 ------------------TVCFQIYALFLHDNWQQHMGVTPTNF--------------AV 77
+C + +L + Q MG T N
Sbjct: 90 CTELTGITQVQVEAGLPLQICLSRFTRWLQ-SLQLEMGFTFPNKQQGSSSSLSTQKLCTF 148
Query: 78 VTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGWH 132
+TWSDWD V L+ EC+ K + KP FN WI+LR + K + + L +
Sbjct: 149 LTWSDWDLGVCLQYECKRKQLHKPDVFNNWIDLRSTYRLWYNRKPKGLNGALQDLGLQFD 208
Query: 133 GRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLT-TP---QDITQDSVMTWNRHHQFLVR 188
GR H GLDD+ N ARL A +M+ G IT+SL TP + +T ++ N + L
Sbjct: 209 GREHSGLDDARNTARLAAKMMRDGCVMKITRSLDRTPVVVKGVTGNATRLTNNTKEKLTV 268
Query: 189 QRKCTFQHTSR 199
+ T TS+
Sbjct: 269 SKNETGPSTSK 279
>gi|358336849|dbj|GAA55310.1| ERI1 exoribonuclease 3 [Clonorchis sinensis]
Length = 230
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 92/201 (45%), Gaps = 44/201 (21%)
Query: 8 KLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY---------- 56
K Q F YF+V+DFEATC++ + P EIIEFP V ++ T F Y
Sbjct: 32 KSQKFKYFLVLDFEATCERNRKLRPAEIIEFPVVKLNSQTLLEESIFHHYIQPVFHPELT 91
Query: 57 ----------------------ALFLHDNW--QQHMGVTPTNFAVVTWSDWDCQVMLESE 92
L L D W ++ + T F VT DWD + ML S+
Sbjct: 92 DFCTELTGIIQDMVDNQPRLEEVLQLFDEWLVKEKLTGTENTFTFVTCGDWDLRTMLPSQ 151
Query: 93 CRFKNIPKPSYFNRWINLRVPFSKGDVRC-------NLKEAVELGWHGRVHCGLDDSMNI 145
CR IP P YF +WIN++ F DVR ++ ++L GR H G+DD+ NI
Sbjct: 152 CRELGIPVPHYFRQWINIKQTFQ--DVRGLFPHSLPHMLSDLDLPLQGRHHSGIDDARNI 209
Query: 146 ARLLAVIMQRGFKFSITKSLT 166
A +L +++ G IT SL
Sbjct: 210 ATVLCQLIKLGAVPDITGSLA 230
>gi|348540662|ref|XP_003457806.1| PREDICTED: ERI1 exoribonuclease 2-like [Oreochromis niloticus]
Length = 628
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 91/210 (43%), Gaps = 54/210 (25%)
Query: 10 QDFDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL-----FLHD- 62
Q F Y +V+DFE+TC +K QEIIEFP+V+++ TG++ F Y L D
Sbjct: 30 QVFSYLIVIDFESTCWREKNNRSQEIIEFPAVLLNTSTGEVESEFHTYVQPQEHPILSDF 89
Query: 63 ------------------------------NWQQHMGVTPTNF------------AVVTW 80
N Q MGV N +TW
Sbjct: 90 CTELTGITQMQVEAGIPLQICLSRFSRWLQNLQLEMGVAFANKDQRCSGPSQKLCTFLTW 149
Query: 81 SDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGWHGRV 135
SDWD V L+ EC+ K + KP N WI+LR + K + + + + GR
Sbjct: 150 SDWDLGVCLQYECKRKQLHKPDVLNSWIDLRSTYRLFYNRKPKGLNGALQDLGIQFSGRE 209
Query: 136 HCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H GLDD+ N A+L A +M+ G IT+SL
Sbjct: 210 HSGLDDARNTAQLAARMMRDGCIMKITRSL 239
>gi|195162325|ref|XP_002022006.1| GL14410 [Drosophila persimilis]
gi|195162327|ref|XP_002022007.1| GL14411 [Drosophila persimilis]
gi|195162329|ref|XP_002022008.1| GL14412 [Drosophila persimilis]
gi|194103904|gb|EDW25947.1| GL14410 [Drosophila persimilis]
gi|194103905|gb|EDW25948.1| GL14411 [Drosophila persimilis]
gi|194103906|gb|EDW25949.1| GL14412 [Drosophila persimilis]
Length = 223
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 95/220 (43%), Gaps = 54/220 (24%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIYAL------ 58
+ F Y + VDFEATC + P Q EIIEFP+++V+ TG + F Y +
Sbjct: 1 MHPFTYAISVDFEATCWENQPAQQFRLSEIIEFPAILVNLKTGMVEAEFHKYVMPVESPQ 60
Query: 59 -------------------------------FLHDNWQQHMGVTPT--------NFAVVT 79
+L V P N VT
Sbjct: 61 LSEYCTSLTGIQQKTVEAGVPLQTALNSFIEWLKKELSARNLVLPKMSMTNPQGNCFFVT 120
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDVRC-----NLKEAVELGWHGR 134
W++WD + L EC KNI KP+ FN+WI+ R + K C N E V L + GR
Sbjct: 121 WTNWDFGICLAKECARKNIRKPTCFNQWIDARAIYKKWYKYCPFSFNNALEHVRLTFQGR 180
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQD 174
+ G+DD+ N+ L+ + + G FSITK LT +++ ++
Sbjct: 181 AYSGIDDAKNLGSLICKMFRDGAPFSITKDLTPHKELNEN 220
>gi|148227894|ref|NP_001089039.1| ERI1 exoribonuclease 2 [Xenopus laevis]
gi|82179168|sp|Q5HZL1.1|ERI2_XENLA RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
domain-containing protein 1
gi|57032602|gb|AAH88972.1| Exod1 protein [Xenopus laevis]
Length = 687
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 99/216 (45%), Gaps = 58/216 (26%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIPHP-QEIIEFPSVIVSGVTGQITVCFQIYA------- 57
P+ Q F+Y +++DFE+TC K H QEIIEFP+V+++ G+I F Y
Sbjct: 29 PKARQFFEYLIIIDFESTCWKDGKHSTQEIIEFPAVLLNVSNGEIESEFHTYVQPQEHPI 88
Query: 58 -------------------------LFLHDNW----QQHMGVT-----PTNF-------A 76
L ++W Q+ G+ PT+ A
Sbjct: 89 LSDFCTELTGINQQQVDDGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSTAEHKMCA 148
Query: 77 VVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-------KGDVRCNLKEAVEL 129
VTWSDWD V L ECR K + KP N WI+LR + KG + L++ + +
Sbjct: 149 FVTWSDWDLGVCLLYECRRKQMKKPDILNSWIDLRATYKLFYNRRPKG-LNGALQD-LGI 206
Query: 130 GWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
+ GR H GLDDS N A+L + ++ G ITKSL
Sbjct: 207 EFSGREHSGLDDSRNTAKLASRMICDGCVMKITKSL 242
>gi|17541516|ref|NP_500418.1| Protein M02B7.2 [Caenorhabditis elegans]
gi|373937875|emb|CCD70202.1| Protein M02B7.2 [Caenorhabditis elegans]
Length = 266
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 90/202 (44%), Gaps = 46/202 (22%)
Query: 10 QDFDYFVVVDFEATCD---KKIPHP-QEIIEFPSVIVSGVTGQITVCFQIY--------- 56
Q FDY +V+DFEATC K HP QEIIEFP V +S F Y
Sbjct: 56 QHFDYLLVLDFEATCQDNWKGPMHPVQEIIEFPVVQLSTADWSEIRRFHQYIKPTEFPRL 115
Query: 57 -----------------------ALFLHDNW-QQHMGVTPTNFAVVTWSDWDCQVMLESE 92
L D+W ++ + NFA VT DWD +V L SE
Sbjct: 116 TSFCTSLTRIIQEMVDEKPKLPEVLSEFDSWLKEDSRLKQGNFAFVTCGDWDLKVALPSE 175
Query: 93 CRFKNIPKPSYFNRWINLRVP-------FSKGDVRCNLKEAVELGWHGRVHCGLDDSMNI 145
+FKNI P YFN+WIN++ F+KG L +L GR+H G+DD NI
Sbjct: 176 AKFKNIEIPEYFNQWINVKKAYAEHTNHFAKG--MTQLLAIYKLQHQGRLHSGIDDVANI 233
Query: 146 ARLLAVIMQRGFKFSITKSLTT 167
++ + + G + IT S T
Sbjct: 234 CEIVRCLGRDGHNYRITGSKDT 255
>gi|327284033|ref|XP_003226743.1| PREDICTED: ERI1 exoribonuclease 2-like [Anolis carolinensis]
Length = 260
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 96/215 (44%), Gaps = 55/215 (25%)
Query: 6 PQKLQDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL----- 58
P+ Q FDY +++DFE+TC D++ + QEIIEFP+V+++ G+I F +Y
Sbjct: 29 PKLRQLFDYLIIIDFESTCWNDRRKCYSQEIIEFPAVLLNTSDGEIESEFHMYVQPQEHP 88
Query: 59 FLHDNWQQHMGVTPTNF------------------------------------------- 75
L + + G+T +
Sbjct: 89 LLSEFCTELTGITQSQVDDGVPLHICLSQFSKWIQKIQKEKNIIFTSGHSSCAASEGKLC 148
Query: 76 AVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDVRC--NLKEAVE---LG 130
A VTWSDWD V L EC+ K + KP N WI+LR + R LK A++ +
Sbjct: 149 AFVTWSDWDLGVCLHYECKRKQLRKPDILNSWIDLRATYKVFYSRKPQGLKGALQDVGII 208
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
+ GR H GLDDS N A L +++ G ITK+L
Sbjct: 209 FAGREHSGLDDSRNTAHLAWRMIRDGCVMKITKTL 243
>gi|195162323|ref|XP_002022005.1| GL14409 [Drosophila persimilis]
gi|194103903|gb|EDW25946.1| GL14409 [Drosophila persimilis]
Length = 223
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 95/220 (43%), Gaps = 54/220 (24%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIYAL------ 58
+ F Y + VDFEATC + P Q EIIEFP+++V+ TG + F Y +
Sbjct: 1 MHPFTYAISVDFEATCWENQPAQQFRLSEIIEFPAILVNLKTGMVEAEFHKYVMPVESPQ 60
Query: 59 -------------------------------FLHDNWQQHMGVTPT--------NFAVVT 79
+L V P N VT
Sbjct: 61 LSEYCTSLTGIQQKTVEAGVPLQTALNSFIEWLKKELSARNLVLPKMSMTNPQGNCFFVT 120
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDVRC-----NLKEAVELGWHGR 134
W++WD + L EC KNI KP+ FN+WI+ R + K C N E V L + GR
Sbjct: 121 WTNWDFGICLAKECARKNIRKPTCFNQWIDARAIYKKWYKYCPFSFNNALEHVRLTFQGR 180
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQD 174
+ G+DD+ N+ L+ + + G FSITK LT +++ ++
Sbjct: 181 AYSGIDDAKNLGILICKMFRDGAPFSITKDLTPHKELNEN 220
>gi|26325030|dbj|BAC26269.1| unnamed protein product [Mus musculus]
Length = 688
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 93/219 (42%), Gaps = 55/219 (25%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI---------- 49
NP + Q + Y +VVDFE+TC D K EIIEFP+V+++ TG+I
Sbjct: 24 NPGGSRLKQLYAYLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQP 83
Query: 50 ---------------------------TVCFQIYALFLHDNWQQHM------GVTPTNFA 76
+C + ++H QQ P+
Sbjct: 84 QEHPILSEFCTELTGIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSE 143
Query: 77 V-----VTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEA 126
V VTWSDWD V LE ECR K + KP + N WI+LR + K +
Sbjct: 144 VKLCAFVTWSDWDLGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQE 203
Query: 127 VELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
V + + GR H GLDDS N A L +++ G IT+SL
Sbjct: 204 VGIEFSGREHSGLDDSRNTALLAWKMIRNGCLMKITRSL 242
>gi|300798138|ref|NP_001178043.1| ERI1 exoribonuclease 2 [Rattus norvegicus]
Length = 687
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 91/213 (42%), Gaps = 59/213 (27%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI------------------ 49
Q +DY +VVDFE+TC D K EIIEFP+V+++ TG+I
Sbjct: 32 QLYDYLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSE 91
Query: 50 -------------------TVCFQIYALFLHDNWQQHM-------------GVTPTNFAV 77
+C + ++H QQ V P F
Sbjct: 92 FCTELTGIKQVQVDEGVPLKICLSQFCKWIHKLQQQKKISFATGDSEPSTPEVKPCAF-- 149
Query: 78 VTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWH 132
VTWSDWD V LE EC+ K + KP + N WI+LR + K + V + +
Sbjct: 150 VTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYNRKPKGLSGALQEVGIEFS 209
Query: 133 GRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
GR H GLDDS N A L +++ G IT+SL
Sbjct: 210 GREHSGLDDSRNTALLAWKMIRDGCLMKITRSL 242
>gi|61098180|ref|NP_081974.3| ERI1 exoribonuclease 2 [Mus musculus]
gi|81888440|sp|Q5BKS4.1|ERI2_MOUSE RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
domain-containing protein 1
gi|60688299|gb|AAH90961.1| Exonuclease domain containing 1 [Mus musculus]
gi|74138480|dbj|BAE38055.1| unnamed protein product [Mus musculus]
gi|74189274|dbj|BAE22676.1| unnamed protein product [Mus musculus]
Length = 688
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 93/219 (42%), Gaps = 55/219 (25%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI---------- 49
NP + Q + Y +VVDFE+TC D K EIIEFP+V+++ TG+I
Sbjct: 24 NPGGSRLKQLYAYLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQP 83
Query: 50 ---------------------------TVCFQIYALFLHDNWQQHM------GVTPTNFA 76
+C + ++H QQ P+
Sbjct: 84 QEHPILSEFCTELTGIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSE 143
Query: 77 V-----VTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEA 126
V VTWSDWD V LE ECR K + KP + N WI+LR + K +
Sbjct: 144 VKLCAFVTWSDWDLGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQE 203
Query: 127 VELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
V + + GR H GLDDS N A L +++ G IT+SL
Sbjct: 204 VGIEFSGREHSGLDDSRNTALLAWKMIRDGCLMKITRSL 242
>gi|351710291|gb|EHB13210.1| Exonuclease domain-containing protein 1, partial [Heterocephalus
glaber]
Length = 684
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 95/211 (45%), Gaps = 55/211 (26%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI------------------ 49
Q +DY +V+DFE+TC D K + QEIIEFP+V+++ TG+I
Sbjct: 27 QLYDYLIVIDFESTCWNDGKHHNNQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPVLSE 86
Query: 50 -------------------TVCFQIYALFLHDNWQQHM-----GVT-PTNFAV-----VT 79
+C + ++H Q+ GV+ P+ V VT
Sbjct: 87 FCMELTGIKQAQIDEGVPLKICLSQFCKWIHKIQQEKKIVFTPGVSDPSTSEVKLCAFVT 146
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 147 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 206
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H GLDDS N A L +++ G IT+ L
Sbjct: 207 EHSGLDDSRNTALLAWKMIRDGCLMKITRCL 237
>gi|74141341|dbj|BAE35962.1| unnamed protein product [Mus musculus]
Length = 636
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 93/219 (42%), Gaps = 55/219 (25%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI---------- 49
NP + Q + Y +VVDFE+TC D K EIIEFP+V+++ TG+I
Sbjct: 24 NPGGSRLKQLYAYLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQP 83
Query: 50 ---------------------------TVCFQIYALFLHDNWQQHM------GVTPTNFA 76
+C + ++H QQ P+
Sbjct: 84 QEHPILSEFCTELTGIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSE 143
Query: 77 V-----VTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEA 126
V VTWSDWD V LE ECR K + KP + N WI+LR + K +
Sbjct: 144 VKLCAFVTWSDWDLGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQE 203
Query: 127 VELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
V + + GR H GLDDS N A L +++ G IT+SL
Sbjct: 204 VGIEFSGREHSGLDDSRNTALLAWKMIRDGCLMKITRSL 242
>gi|221132558|ref|XP_002167097.1| PREDICTED: 3'-5' exoribonuclease 1-like [Hydra magnipapillata]
Length = 287
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 45/195 (23%)
Query: 13 DYFVVVDFEATCDKKIPHP----QEIIEFPSVIVSGVTGQITVCFQIY------------ 56
DY+VV+DFEATCD+ P+P EIIEFP+V+V T +I F Y
Sbjct: 95 DYYVVIDFEATCDE--PNPSGFQHEIIEFPAVLVKTSTLEIVSEFHSYCRPVINPVLSEF 152
Query: 57 --------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
L D W + + F + T WD L+++C+
Sbjct: 153 CKSLTGITQVQVESSSVFEVVLQRFDKWLKQQVMPTETFCIATDGPWDLDRFLKNQCKTL 212
Query: 97 NIPKPSYFNRWINLRVPF------SKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLA 150
NI P YF+RW+N+R F ++ +V L+ + + + GR H G+DD+ NIAR+L
Sbjct: 213 NIQIPHYFHRWVNIRKHFYNYYKINQANVELMLQH-LGMEFEGRPHRGIDDARNIARILI 271
Query: 151 VIMQRGFKFSITKSL 165
+++ G I +SL
Sbjct: 272 QLIRDGADPLINESL 286
>gi|431908545|gb|ELK12140.1| Exonuclease domain-containing protein 1 [Pteropus alecto]
Length = 529
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 90/211 (42%), Gaps = 55/211 (26%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQIT----------------- 50
Q FDY +V+DFE+TC + K QEIIEFP+V+++ G+I
Sbjct: 32 QLFDYLIVIDFESTCWNEGKRHQSQEIIEFPAVLLNTSNGEIESEFHAYVQPQEHPILSE 91
Query: 51 --------------------VCFQIYALFLHDNWQQHMGVTPTNF-----------AVVT 79
+C + ++H Q+ T A VT
Sbjct: 92 FCMELTGIKQDQVDEGVPLKICLSQFCKWIHKIQQEKKITFATGISDLSTSEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LRV + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYRRKPKGLSGALQEVGIEFLGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H GLDDS N A L +++ G IT+ L
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCSMKITRCL 242
>gi|157116964|ref|XP_001652909.1| exonuclease [Aedes aegypti]
gi|108876231|gb|EAT40456.1| AAEL007801-PA [Aedes aegypti]
Length = 234
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 94/211 (44%), Gaps = 55/211 (26%)
Query: 10 QDFDYFVVVDFEATC----DKKIPHPQEIIEFPSVIVSGVTGQIT--------------- 50
Q F Y +V+DFEATC D + EIIEFP+V+++ GQI
Sbjct: 16 QTFQYLIVIDFEATCWPAEDAQKWKKNEIIEFPAVLLNLSNGQIESEFRQFVMPIENPRL 75
Query: 51 --VCFQIYA---------------LFLHDNWQQH--MG--------VTPTN----FAVVT 79
C Q+ L L D W + +G + P+N A T
Sbjct: 76 SDFCIQLTGIRQDQVENGVPLHTCLSLFDRWLKKNVLGDRGLILPKMAPSNPTGTVAFAT 135
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRV---PFSKGDVRCNLKEAVELG--WHGR 134
W+DWD L EC K I K YF++WI++R F + + + LG + GR
Sbjct: 136 WTDWDLGSCLTKECTRKKINKAGYFDQWIDVRAIYKTFYQHNPKSFADALTTLGMRFEGR 195
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H G+DDS NIAR++A + + G F ITK L
Sbjct: 196 PHSGMDDSKNIARVVAKMRREGANFIITKDL 226
>gi|242078555|ref|XP_002444046.1| hypothetical protein SORBIDRAFT_07g006350 [Sorghum bicolor]
gi|241940396|gb|EES13541.1| hypothetical protein SORBIDRAFT_07g006350 [Sorghum bicolor]
Length = 122
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 60/119 (50%), Gaps = 33/119 (27%)
Query: 12 FDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY-------------- 56
FD+FVV+DFEATC + + +PQEIIEF SV+V G TG+ F+ Y
Sbjct: 2 FDFFVVIDFEATCQEGSVIYPQEIIEFTSVLVDGATGRTLSTFRTYVRPRHHPCLTDFYR 61
Query: 57 ------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKN 97
AL +HD W + G AVVTW DWDC+ M E ECRFK+
Sbjct: 62 DLTGITQDDVDAGVSLAEALEMHDRWLEEHGAKLGKLAVVTWGDWDCRTMPEGECRFKS 120
>gi|12855883|dbj|BAB30489.1| unnamed protein product [Mus musculus]
Length = 274
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 93/219 (42%), Gaps = 55/219 (25%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI---------- 49
NP + Q + Y +VVDFE+TC D K EIIEFP+V+++ TG+I
Sbjct: 24 NPGGSRLKQLYAYLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQP 83
Query: 50 ---------------------------TVCFQIYALFLHDNWQQHM------GVTPTNFA 76
+C + ++H QQ P+
Sbjct: 84 QEHPILSEFCTELTGIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSE 143
Query: 77 V-----VTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEA 126
V VTWSDWD V LE ECR K + KP + N WI+LR + K +
Sbjct: 144 VKLCAFVTWSDWDLGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQE 203
Query: 127 VELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
V + + GR H GLDDS N A L +++ G IT+SL
Sbjct: 204 VGIEFSGREHSGLDDSRNTALLAWKMIRDGCLMKITRSL 242
>gi|432943748|ref|XP_004083266.1| PREDICTED: 3'-5' exoribonuclease 1-like [Oryzias latipes]
Length = 342
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 89/201 (44%), Gaps = 44/201 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYAL-----FLHD-- 62
+DY VVDFEATC++ P EIIEFP V+++ T QI FQ Y L D
Sbjct: 120 YDYICVVDFEATCEEDNPSDFLHEIIEFPLVLINTHTLQIVDTFQSYVKPELNPKLSDFC 179
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
W Q + T +A++T WD L +CR
Sbjct: 180 VTLTGITQEMVDEADPFPQVLQRVVKWLQERDLGTKHKYAILTDGSWDMSKFLNIQCRVS 239
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
I P + +WIN+R +P S+ + L E + + + GR HCGLDDS NIAR+
Sbjct: 240 RIRYPQFAKKWINIRKSYGNFYKLPRSQTKLSTML-EKLGMKYEGRPHCGLDDSRNIARI 298
Query: 149 LAVIMQRGFKFSITKSLTTPQ 169
++Q G + + + + Q
Sbjct: 299 AVRMLQDGCQLRVNERMHAGQ 319
>gi|198477158|ref|XP_002136734.1| GA23278 [Drosophila pseudoobscura pseudoobscura]
gi|198145039|gb|EDY71751.1| GA23278 [Drosophila pseudoobscura pseudoobscura]
Length = 223
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 95/224 (42%), Gaps = 62/224 (27%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIYAL------ 58
+ F Y + VDFEATC + P Q EIIEFP+++V+ TG + F Y +
Sbjct: 1 MHPFTYAISVDFEATCWENQPAQQFRLSEIIEFPAILVNLKTGMVEAEFHKYVMPVEKPQ 60
Query: 59 -------------------------------FLHDNWQQHMGVTPT--------NFAVVT 79
+L V P N VT
Sbjct: 61 LSEYCTSLTGIQQKTVEAGVPLQTALNSFIEWLKKELSARNLVLPKMSMTNPQGNCFFVT 120
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRV---------PFSKGDVRCNLKEAVELG 130
W++WD + L EC KNI KP+ FN+WI+ + PFS N E V L
Sbjct: 121 WTNWDFGICLAKECARKNIRKPTCFNQWIDAKAIYQKWYKYRPFSFN----NALEHVRLT 176
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQD 174
+ GR H G+DD+ N+ L+ + + G FSITK LT +++ ++
Sbjct: 177 FQGRAHSGIDDAKNLGSLICKMFRDGAPFSITKDLTPHKELNEN 220
>gi|195162331|ref|XP_002022009.1| GL14413 [Drosophila persimilis]
gi|194103907|gb|EDW25950.1| GL14413 [Drosophila persimilis]
Length = 223
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 93/220 (42%), Gaps = 54/220 (24%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIYAL------ 58
+ F Y + VDFEATC + P Q EIIEFP+ +V+ TG + F Y +
Sbjct: 1 MHPFTYAISVDFEATCWENQPAQQFRLSEIIEFPANLVNLKTGMVEAEFHKYVMPVESPQ 60
Query: 59 -------------------------------FLHDNWQQHMGVTPT--------NFAVVT 79
+L V P N VT
Sbjct: 61 LSEYCTSLTGIQQKTVEAGVPLQTALNSFIEWLKKELSARNLVLPKMSMTNPQGNCFFVT 120
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDVRC-----NLKEAVELGWHGR 134
W++WD + L EC KNI KP+ FN+WI+ + + K C N E V L + GR
Sbjct: 121 WTNWDFETCLAKECARKNIRKPTCFNQWIDAKAIYKKWYKYCPFSFNNALEHVRLTFQGR 180
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQD 174
H G+ D+ N+ L+ + + G FSITK LT +++ ++
Sbjct: 181 AHSGMHDAKNLGSLICKMFRDGAPFSITKDLTPHKELNEN 220
>gi|198477156|ref|XP_002136733.1| GA23277 [Drosophila pseudoobscura pseudoobscura]
gi|198145038|gb|EDY71750.1| GA23277 [Drosophila pseudoobscura pseudoobscura]
Length = 223
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 95/224 (42%), Gaps = 62/224 (27%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIYAL------ 58
+ F Y + VDFEATC + P Q EIIEFP+++V+ TG + F Y +
Sbjct: 1 MHPFTYAISVDFEATCWENQPAQQFRLSEIIEFPAILVNLKTGMVEAEFHKYVMPVEKPQ 60
Query: 59 -------------------------------FLHDNWQQHMGVTPT--------NFAVVT 79
+L V P N VT
Sbjct: 61 LSEYCTSLTGIQQKTVEAGVPLQTALNSFIEWLKKELSARNLVLPKMSMTNPQGNCFFVT 120
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRV---------PFSKGDVRCNLKEAVELG 130
W++WD + L EC KNI KP+ FN+WI+ + PFS N E V L
Sbjct: 121 WTNWDFGICLAKECARKNIRKPTCFNQWIDAKSIYQKWYKYRPFSFN----NALEHVRLT 176
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQD 174
+ GR H G+DD+ N+ L+ + + G FSITK LT +++ ++
Sbjct: 177 FQGRAHSGIDDAKNLGSLICKMFRDGAPFSITKDLTPHKELNEN 220
>gi|402854302|ref|XP_003891813.1| PREDICTED: ERI1 exoribonuclease 3 [Papio anubis]
Length = 458
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 94/217 (43%), Gaps = 49/217 (22%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 238 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 297
Query: 57 -------------------ALFLHDNWQQHMGVTPTNFAV--VTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 298 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 357
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNI---- 145
+P YF +WINL+ +S + ++ + + L GR H G+ S+ I
Sbjct: 358 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIGQSLRIFPWQ 417
Query: 146 --ARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWN 180
LA + Q ++ + + PQ Q S+ +W
Sbjct: 418 LHPSSLARMPQSPGTQRVSMAHSVPQ---QGSLHSWG 451
>gi|443698717|gb|ELT98575.1| hypothetical protein CAPTEDRAFT_130678 [Capitella teleta]
Length = 328
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 94/210 (44%), Gaps = 47/210 (22%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q +D+++VVDFEATC+ P EIIEFP V++ G T Q+ F Y
Sbjct: 76 QYYDFYLVVDFEATCEDSHTWPHEIIEFPIVVIDGKTHQVVDEFHSYVRPTINPVLTDFC 135
Query: 58 ---------------LF----------LHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESE 92
LF LH N GV A VT WD + +
Sbjct: 136 ISLTGISQDQVDSSPLFPEVLTSVESWLHRNKYCGKGVRS---AFVTDGPWDMSRFMYLQ 192
Query: 93 CRFKNIPKPSYFNRWINLRVP------FSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIA 146
C+ N+ P + N W+N+R F + +R L E + + + GR HCGLDD+ NIA
Sbjct: 193 CKHSNLAFPRWANTWVNIRKTYCNFYHFKRTSLRKML-ENMGMSFEGRPHCGLDDTRNIA 251
Query: 147 RLLAVIMQRGFKFSITKSLTTPQDITQDSV 176
R+ ++Q G ++ + L P+ + +S+
Sbjct: 252 RIAQRMLQDGSPLNVNERLFGPKLKSGESL 281
>gi|405971378|gb|EKC36217.1| Exonuclease domain-containing protein 1, partial [Crassostrea
gigas]
Length = 590
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 96/208 (46%), Gaps = 52/208 (25%)
Query: 10 QDFDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL-----FLHDN 63
Q F Y +++D+E+TC ++K QEIIEFP+V+++ +TG + F Y + L D
Sbjct: 29 QQFSYLIILDYESTCWEQKKFQTQEIIEFPAVLLNTLTGVVESEFHYYVMPEEQPMLSDF 88
Query: 64 WQQHMGVT----------------------------------PTNFAV-------VTWSD 82
+Q G+T P+ + VTWSD
Sbjct: 89 CKQLTGITQEQVDNGIPLRLCLRKFSHWLDKLQREKGLVFDPPSEDSTEASYTTFVTWSD 148
Query: 83 WDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK-GDVRCN-LKEAVE---LGWHGRVHC 137
WD L +EC+ K + KPS N WI+LR + K D + N L A++ + + GR H
Sbjct: 149 WDLGTCLLNECKRKQLLKPSQLNNWIDLRATYRKFYDRKPNGLNGALQDLGIEFEGREHS 208
Query: 138 GLDDSMNIARLLAVIMQRGFKFSITKSL 165
G+ D+ N A L +M G ITKSL
Sbjct: 209 GIVDARNTATLAYRMMCDGCVMKITKSL 236
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 210 CFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFH 250
C CG +S +++++ PGP G FFF C + C +F
Sbjct: 488 CKCGRRSKRRMVQSPGPNLGRFFFSCSGVKSIDRNGCGFFK 528
>gi|147900544|ref|NP_001089554.1| exoribonuclease 1 [Xenopus laevis]
gi|67678439|gb|AAH97876.1| Thex1 protein [Xenopus laevis]
Length = 348
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCD--KKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
+DY V+DFEATC+ + +P EIIEFP V+++ T +I FQ Y
Sbjct: 126 YDYICVIDFEATCEAGNSLDYPHEIIEFPIVLLNTHTLEIEDVFQCYVRPEINPQLSEFC 185
Query: 58 --------------------LFLHDNW--QQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
L W ++ +G + +A++T WD L +CR
Sbjct: 186 VNLTGITQDTVDKSDTFPNVLRSVVEWMREKELG-SKYKYAILTDGSWDMSKFLNMQCRI 244
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP ++ + L E + + ++GR+H GLDDS NIAR
Sbjct: 245 SRLKYPRFAKKWINIRKSYGNFYKVPRTQTKLTTML-EKLGMTYNGRLHSGLDDSKNIAR 303
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ A ++Q G + + + + Q +T S +
Sbjct: 304 IAAHMLQDGCELRVNERMHAGQLMTVSSSL 333
>gi|195162333|ref|XP_002022010.1| GL14415 [Drosophila persimilis]
gi|194103908|gb|EDW25951.1| GL14415 [Drosophila persimilis]
Length = 223
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 94/224 (41%), Gaps = 62/224 (27%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIYAL------ 58
+ F Y + VDFEATC + P Q EIIEFP+++V+ TG + F Y +
Sbjct: 1 MHPFTYAISVDFEATCWENQPAQQFRLSEIIEFPAILVNLKTGMVEAEFHKYVMPVESPQ 60
Query: 59 -------------------------------FLHDNWQQHMGVTPT--------NFAVVT 79
+L V P N VT
Sbjct: 61 LSEYCTSLTGIQQKTVEAGVPLQTALNSFIEWLKKELSARNLVLPKMSMTNPQGNCFFVT 120
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRV---------PFSKGDVRCNLKEAVELG 130
W++WD + L EC KNI KP+ FN+WI+ + PF+ G + V L
Sbjct: 121 WTNWDFETCLAKECARKNIRKPTCFNQWIDAKAIYKKWYKYHPFNFGKALAH----VRLT 176
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQD 174
+ GR H G+DD+ N+ L+ + + G SITK LT +++ ++
Sbjct: 177 FQGRAHSGIDDAKNLGNLICKMFREGAPLSITKDLTPQEELNEN 220
>gi|291236484|ref|XP_002738169.1| PREDICTED: CG7896-like [Saccoglossus kowalevskii]
Length = 1408
Score = 86.3 bits (212), Expect = 1e-14, Method: Composition-based stats.
Identities = 60/204 (29%), Positives = 90/204 (44%), Gaps = 40/204 (19%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQI-----TVCFQIYALFLHDNW 64
FDY VV+D+EATC+K+ P + EIIEFP V+++ T ++ T C + L D
Sbjct: 1086 FDYLVVIDYEATCEKENPTDYVHEIIEFPVVLINSKTLKMEKEFRTFCRPVLHPKLSDFC 1145
Query: 65 QQHMGVTPT----------------------------NFAVVTWSDWDCQVMLESECRFK 96
+ G+T +FA+VT WD L +C
Sbjct: 1146 TELTGITQAQVDGAPLFSDVLDQFENWLEENKLGSEYSFAIVTDGPWDIICFLNVQCVLS 1205
Query: 97 NIPKPSYFNRWINLRVPFSKGDVRCNLK-----EAVELGWHGRVHCGLDDSMNIARLLAV 151
I P Y RWIN+R FS LK + + + + GR H G+ D NIAR++
Sbjct: 1206 QISFPEYARRWINIRKLFSNYYHTRRLKLTLMLDHLGMTFEGRQHSGIADCRNIARIMVK 1265
Query: 152 IMQRGFKFSITKSLTTPQDITQDS 175
+++ G + + T P+ DS
Sbjct: 1266 LLEDGCQIKTNEVFTLPKQTYGDS 1289
>gi|393907515|gb|EFO17571.2| exonuclease [Loa loa]
Length = 267
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 92/199 (46%), Gaps = 47/199 (23%)
Query: 10 QDFDYFVVVDFEATCDKKI---PHPQEIIEFPSVIVSG---------------------- 44
Q+FDYF+V+DFEATC++ I PH QEIIEFP + +SG
Sbjct: 57 QNFDYFLVLDFEATCEEGIKIMPH-QEIIEFPVIQLSGKNLEEISRFHRYVKPTERPILT 115
Query: 45 -----VTG--QITVCFQIY---ALFLHDNWQQHMGV------TPTNFAVVTWSDWDCQVM 88
+TG Q TV Q L D W + + ++F +T DWD V+
Sbjct: 116 SFCTELTGIVQETVASQESLPEVLDAFDKWLINSNLINADHSMKSHFTFITCGDWDLGVL 175
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFSK-----GDVRCNLKEAVELGWHGRVHCGLDDSM 143
L SE ++N+ P YF RWINL+ F K + +EL GR+H G+DD
Sbjct: 176 LPSEANYRNLKLPDYFKRWINLKKAFCKWNGYFAKSLTVMLHDLELNHLGRLHSGIDDVR 235
Query: 144 NIARLLAVIMQRGFKFSIT 162
N+ ++ + + G F T
Sbjct: 236 NMCQITRSLAKSGCVFQNT 254
>gi|66811074|ref|XP_639244.1| hypothetical protein DDB_G0283113 [Dictyostelium discoideum AX4]
gi|60467872|gb|EAL65886.1| hypothetical protein DDB_G0283113 [Dictyostelium discoideum AX4]
Length = 220
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 42/200 (21%)
Query: 10 QDFDYFVVVDFEATCDKKIPHP-QEIIEFPSVIVSGVTGQITVCFQIY------------ 56
Q F Y +V+DFEATC+K + P QEIIEFPSVI++ T + F+ Y
Sbjct: 19 QKFKYLIVLDFEATCEKDVKFPNQEIIEFPSVIINTETLETVSTFREYVKPIINPNLSKF 78
Query: 57 --------------ALFLHDNWQQH---------MGVTPTNFAVVTWSDWDCQVMLESEC 93
A D + H + + V DWD L +
Sbjct: 79 CTELTGIKQETVENAALFPDVLKSHCDWFFESLPKDIQSDEYCFVCCGDWDLLQCLPKQL 138
Query: 94 RF-KNIPKPSYFNRWINLRVPFSKGDVR-----CNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ N+ KPSY ++WIN++ ++ R N+ + + GR HCGL DS+NI++
Sbjct: 139 KLCNNLSKPSYLSKWINIKKQYTLFYNRPSFGMTNMLRELNIPLEGRHHCGLSDSLNISK 198
Query: 148 LLAVIMQRGFKFSITKSLTT 167
+L +++ G F + ++ +
Sbjct: 199 ILKRMIEEGCNFDLVSTMKS 218
>gi|308492914|ref|XP_003108647.1| hypothetical protein CRE_11149 [Caenorhabditis remanei]
gi|308248387|gb|EFO92339.1| hypothetical protein CRE_11149 [Caenorhabditis remanei]
Length = 280
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 87/195 (44%), Gaps = 42/195 (21%)
Query: 10 QDFDYFVVVDFEATCDKKIPHP----QEIIEFPSVIVSGVTGQITVCFQIYA-------- 57
Q F+Y +++DFEATC + P QEIIEFP V +S + F Y
Sbjct: 61 QQFEYLLILDFEATCQENSKGPILPVQEIIEFPVVQLSTSDWKEIRRFHQYVRPTESPKL 120
Query: 58 ------------------------LFLHDNW-QQHMGVTPTNFAVVTWSDWDCQVMLESE 92
L D W ++ + NFA VT DWD +V L +E
Sbjct: 121 TSFCTSLTGIIQEMVDEKPTLSGVLEEFDKWLKEDSRLENNNFAFVTCGDWDLKVALPNE 180
Query: 93 CRFKNIPKPSYFNRWINLRVPFSK-----GDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+FKNIP P YF++WIN++ +++ L + +L GR H G+DD NI
Sbjct: 181 AKFKNIPIPDYFHQWINVKKAYAEHTNDFARGMMQLLKIYKLQHQGRHHSGIDDVANICE 240
Query: 148 LLAVIMQRGFKFSIT 162
++ + + G + IT
Sbjct: 241 VVRCLGKDGHNYRIT 255
>gi|391342996|ref|XP_003745801.1| PREDICTED: ERI1 exoribonuclease 3-like [Metaseiulus occidentalis]
Length = 245
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 86/200 (43%), Gaps = 43/200 (21%)
Query: 10 QDFDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIY----------- 56
Q F F+V+DFEATC++ P P QEIIEFP + +S T + F Y
Sbjct: 47 QVFSNFLVMDFEATCNRAGPKPFPQEIIEFPVLNLSADTFEEVSRFHTYVRPDVHPELSD 106
Query: 57 ---------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
L L + W + G+ N VT+ +WD L+ +C +
Sbjct: 107 FCTELTGIMQSMVEDQPNLEETLKLFEKWLEDNGLNTENSIPVTFGNWDLATALKRQCSY 166
Query: 96 KNIPKPSYFNRWINLRVP-------FSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
I P +WIN++ P + +G C K +E + GR H G+DD NIA+L
Sbjct: 167 LGIDVPPILQQWINIKYPIFYFWRSWPRGLSHCLEKAGLE--FQGRAHSGIDDCTNIAQL 224
Query: 149 LAVIMQRGFKFSITKSLTTP 168
L + +R F T +P
Sbjct: 225 LKYLGERNMIFKPTNKGMSP 244
>gi|17541752|ref|NP_499887.1| Protein R02D3.8 [Caenorhabditis elegans]
gi|351064690|emb|CCD73172.1| Protein R02D3.8 [Caenorhabditis elegans]
Length = 266
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 93/204 (45%), Gaps = 50/204 (24%)
Query: 10 QDFDYFVVVDFEATCD---KKIPHP-QEIIEFPSVIVS---------------------- 43
Q FDY +V+DFEATC K HP QEIIEFP V +S
Sbjct: 56 QHFDYLLVLDFEATCQDNWKGPMHPVQEIIEFPVVQLSTADWSEIRRFHQYVKPTECPRL 115
Query: 44 -----GVTGQITVCF-------QIYALFLHDNW-QQHMGVTPTNFAVVTWSDWDCQVMLE 90
+TG I Q+ + F D+W ++ + FA VT DWD +V L
Sbjct: 116 TSFCTSLTGIIQEMVDEKPTLPQVLSEF--DSWLKEDSRLEKGKFAFVTCGDWDLKVALP 173
Query: 91 SECRFKNIPKPSYFNRWINLRVP-------FSKGDVRCNLKEAVELGWHGRVHCGLDDSM 143
+E +FKNI P YFN+WIN++ F+KG + L +L GR H G+DD
Sbjct: 174 NEAKFKNIGIPEYFNQWINVKKASAEHTNHFAKGIAQ--LLAIYKLQHQGRHHSGIDDVA 231
Query: 144 NIARLLAVIMQRGFKFSITKSLTT 167
NI ++ + G + IT S T
Sbjct: 232 NICEIVRCLGMNGHNYQITGSKDT 255
>gi|302844761|ref|XP_002953920.1| hypothetical protein VOLCADRAFT_44726 [Volvox carteri f.
nagariensis]
gi|300260732|gb|EFJ44949.1| hypothetical protein VOLCADRAFT_44726 [Volvox carteri f.
nagariensis]
Length = 201
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 39/191 (20%)
Query: 13 DYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIYA-------------- 57
D F+V+D EATC K + +P EIIE ++++ + FQ +
Sbjct: 1 DLFLVLDLEATCTKCRSLYPIEIIEVSALLLDAHSLATLGEFQSHVRPTEHPLLDPFCVE 60
Query: 58 ------------------LFLHDNWQQHMGV--TPTNFAVVTWSDWDCQVMLESECRFKN 97
L W + +G + VTW+DWD ++ LE+EC ++
Sbjct: 61 LTGIEQEQVDTAPLLGDVLLRFQQWLEGLGAFGGAKSLLPVTWTDWDLKICLETECGWRQ 120
Query: 98 IPKPSYFNRWINLRVPFSKGDVRCN----LKEAVELGWHGRVHCGLDDSMNIARLLAVIM 153
+P+P Y RW NL+ + R + EA+ L W GR H GLDDS N A L ++
Sbjct: 121 LPRPPYLRRWCNLKRVYGARYRRASSLQKCVEALGLRWQGRAHNGLDDSRNTAMLAVRMV 180
Query: 154 QRGFKFSITKS 164
+ G ++T S
Sbjct: 181 RDGCVLTVTDS 191
>gi|444721415|gb|ELW62152.1| ERI1 exoribonuclease 3 [Tupaia chinensis]
Length = 349
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 40/177 (22%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 161 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 220
Query: 57 -------------------ALFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 221 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 280
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIA 146
+P YF +WINL+ +S + ++ + + L GR H G+ ++++
Sbjct: 281 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIGQFLHMS 337
>gi|66472518|ref|NP_001018450.1| 3'-5' exoribonuclease 1 [Danio rerio]
gi|63100708|gb|AAH95343.1| Exoribonuclease 1 [Danio rerio]
gi|182888732|gb|AAI64140.1| Eri1 protein [Danio rerio]
Length = 337
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 44/197 (22%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYAL-FLHD------ 62
FDY VVDFEATC++ P + EIIEFP V++ T +I FQ Y LH
Sbjct: 115 FDYICVVDFEATCEENNPPDYLHEIIEFPMVLIDTHTLEIVDSFQEYVKPVLHPQLSEFC 174
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W Q + T + +T WD L ++C+
Sbjct: 175 VKLTGITQEMVDEAKTFHQVLKRAISWLQEKELGTKYKYMFLTDGSWDMGKFLHTQCKLS 234
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
I P + +WIN+R VP ++ + C L E + + + GR HCGLDDS NIAR+
Sbjct: 235 RIRYPQFARKWINIRKSYGNFYKVPRTQTKLICML-ENLGMEYDGRPHCGLDDSRNIARI 293
Query: 149 LAVIMQRGFKFSITKSL 165
+++ G + + + L
Sbjct: 294 AIHMLKDGCQLRVNECL 310
>gi|56758854|gb|AAW27567.1| SJCHGC03520 protein [Schistosoma japonicum]
Length = 201
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 94/207 (45%), Gaps = 56/207 (27%)
Query: 7 QKLQDFDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVCF----------- 53
+ +Q F YF+V+DFEATC+K KIP P EIIEFP ++V+ T F
Sbjct: 2 KNVQKFAYFMVLDFEATCEKDIKIPDP-EIIEFPVLMVNAYTLHTESIFHHYVRPTINPV 60
Query: 54 --------------------------QIYALFLHDNWQQHMGVTPTNFAVVTWSDWDCQV 87
+++ LFL N ++ + P FA VT DWD ++
Sbjct: 61 LSDFCTELTGIIQSMIEDEPELPSILKMFDLFLDKN---NLKICPYKFAFVTCGDWDLKI 117
Query: 88 MLESECRFKNIPKPSYFNRWINLR---------VPFSKGDVRCNLKEAVELGWHGRVHCG 138
ML +C+ I P F +WINL+ PFS ++ + + GR H G
Sbjct: 118 MLPQQCKLLGIDVPDCFKQWINLKQVYCDVMGQFPFS----MMSMLAGLNIKHTGRHHSG 173
Query: 139 LDDSMNIARLLAVIMQRGFKFSITKSL 165
+DD NIA +L +++ G IT ++
Sbjct: 174 IDDCRNIANILCELIRCGATPDITGNI 200
>gi|308452945|ref|XP_003089242.1| hypothetical protein CRE_11597 [Caenorhabditis remanei]
gi|308241498|gb|EFO85450.1| hypothetical protein CRE_11597 [Caenorhabditis remanei]
Length = 264
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 42/195 (21%)
Query: 10 QDFDYFVVVDFEATCDKKIPHP----QEIIEFPSVIVSGVTGQITVCFQIYA-------- 57
Q F+Y +++DFEATC + P QEIIEFP V +S + F Y
Sbjct: 45 QQFEYLLILDFEATCQENSKGPILPVQEIIEFPVVQLSTSDWKEIRRFHQYVRPTESSKL 104
Query: 58 ----LFLHDNWQQHMGVTPT---------------------NFAVVTWSDWDCQVMLESE 92
L Q+ + PT NFA VT DWD +V L +E
Sbjct: 105 TSFCTSLTGIIQEMVDEKPTLSDVLEEFNKWLKEDSRLENNNFAFVTCGDWDLKVALPNE 164
Query: 93 CRFKNIPKPSYFNRWINLRVPFSK-----GDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+FKNIP P YF++WIN++ +++ L + +L GR H G+DD NI
Sbjct: 165 AKFKNIPIPDYFHQWINVKKAYAEHTNDFARGMMQLLKIYKLQHQGRHHSGIDDVANICE 224
Query: 148 LLAVIMQRGFKFSIT 162
++ + + G + IT
Sbjct: 225 VVRCLGKDGHNYRIT 239
>gi|383849952|ref|XP_003700597.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 6-like
[Megachile rotundata]
Length = 609
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 85/190 (44%), Gaps = 48/190 (25%)
Query: 10 QDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQITVCFQIYAL---------- 58
Q F+Y +VVDFE+TC++ + PQEIIEFP VS T I F Y
Sbjct: 418 QHFNYLLVVDFESTCERYVKMQPQEIIEFPCAAVSTRTWNIENVFHEYVKPKINPELTPF 477
Query: 59 ------FLHD----------------NW-QQHMGVTPTNFAV-VTWSDWDCQVMLESECR 94
+ D W ++H T N V VT DWD + ML +C+
Sbjct: 478 CTELTGIIQDMVDNQPHFPEVFDKFCKWIEEHNYFTEGNNCVYVTCGDWDMKSMLPQQCK 537
Query: 95 FKNIPKPSYFNRWINLR---------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNI 145
NIP P +F +WINL+ P S D+ LK L HGR+H G++D N+
Sbjct: 538 LDNIPVPDHFQKWINLKNIFCDVTQYYPRSLKDMLAFLK----LPLHGRLHSGINDVENM 593
Query: 146 ARLLAVIMQR 155
R++ + +
Sbjct: 594 VRIIQALQAK 603
>gi|198477154|ref|XP_002136732.1| GA23276 [Drosophila pseudoobscura pseudoobscura]
gi|198477160|ref|XP_002136735.1| GA23279 [Drosophila pseudoobscura pseudoobscura]
gi|198145037|gb|EDY71749.1| GA23276 [Drosophila pseudoobscura pseudoobscura]
gi|198145040|gb|EDY71752.1| GA23279 [Drosophila pseudoobscura pseudoobscura]
Length = 223
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 93/224 (41%), Gaps = 62/224 (27%)
Query: 9 LQDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIYAL------ 58
+ F Y + VDFEATC P Q EIIEFP+++V+ TG + F Y +
Sbjct: 1 MHPFTYAISVDFEATCWVNQPAQQFRLSEIIEFPAILVNLKTGMVEAEFHKYVMPVEKPQ 60
Query: 59 -------------------------------FLHDNWQQHMGVTPT--------NFAVVT 79
+L V P N VT
Sbjct: 61 LSEYCTSLTGIQQKTVEAGVPLQTALNSFIEWLKKELSARNLVLPKMSMTNPQGNCFFVT 120
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRV---------PFSKGDVRCNLKEAVELG 130
W++WD + L EC KNI KP+ FN+WI+ + PFS N E V L
Sbjct: 121 WTNWDFGICLAKECARKNIRKPTCFNQWIDAKAIYQKWYKYRPFSFN----NALEHVRLT 176
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQD 174
+ GR H G+DD+ N+ L+ + + G FSIT LT +++ ++
Sbjct: 177 FQGRAHSGIDDAKNLGSLICKMFRDGAPFSITMDLTPHKELNEN 220
>gi|296221910|ref|XP_002756956.1| PREDICTED: 3'-5' exoribonuclease 1 [Callithrix jacchus]
Length = 348
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 92/202 (45%), Gaps = 46/202 (22%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 126 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTRLSDFC 185
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 186 ISLTGITQDQVDRADTFPHVLKKVIDWMKLKELG-TKYKYSILTDGSWDMSKFLNIQCQI 244
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
I PS+ +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR
Sbjct: 245 SRIKYPSFAKKWINIRKSYGNFYKVPRSQTKLAIML-EKLGMDYDGRPHCGLDDSKNIAR 303
Query: 148 LLAVIMQRGFKFSITKSLTTPQ 169
+ ++Q G + I + + Q
Sbjct: 304 IAVRMLQDGCELRINEKMHAGQ 325
>gi|449500377|ref|XP_002196066.2| PREDICTED: 3'-5' exoribonuclease 1-like [Taeniopygia guttata]
Length = 355
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 46/208 (22%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQ--------------- 54
+DY VVDFEATC++ P EIIEFP V+V+ T +I FQ
Sbjct: 133 YDYICVVDFEATCEEGNPPEFVHEIIEFPVVLVNTRTLEIEDTFQQYVKPEINPKLSDFC 192
Query: 55 ---------------IYALFLHD--NW--QQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
I+ L + W Q+ +G T +++++T WD L ++CR
Sbjct: 193 ISLTGITQDIVDKADIFPQVLQNVIEWMRQRELG-TKYSYSMLTDGSWDMSKFLNTQCRI 251
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
I PS+ +WIN+R VP ++ + L E + + + GR H GLDDS NIAR
Sbjct: 252 SRIKYPSFAKKWINIRKSYGNFYKVPRNQTKLTIML-ENLGMNYDGRPHSGLDDSKNIAR 310
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDS 175
+ ++Q G + + + Q +T S
Sbjct: 311 IAIRMLQDGCDLRVNERIHGGQLMTVSS 338
>gi|348521266|ref|XP_003448147.1| PREDICTED: 3'-5' exoribonuclease 1-like [Oreochromis niloticus]
Length = 341
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 88/197 (44%), Gaps = 44/197 (22%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYAL-----FLHD-- 62
+DY VVDFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 119 YDYICVVDFEATCEEDNPSDFLHEIIEFPMVLINTHTLEIVDTFQEYVKPELNPQLSDFC 178
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W Q + T +A++T WD L +CR
Sbjct: 179 VKLTGITQKMVDEADPFPVVLQRVVSWLQERELGTKYKYAILTDGSWDMSKFLNIQCRVS 238
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
I P + +WIN+R VP ++ + L E + L + GR H GLDDS NIAR+
Sbjct: 239 RIKYPPFAKKWINIRKSYGNFYKVPRTQTKLSTML-EKLGLTYEGRPHSGLDDSRNIARI 297
Query: 149 LAVIMQRGFKFSITKSL 165
++Q G + + + +
Sbjct: 298 AVRMLQDGCQLRVNERM 314
>gi|268552995|ref|XP_002634480.1| Hypothetical protein CBG10739 [Caenorhabditis briggsae]
Length = 279
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 10 QDFDYFVVVDFEATCDKKIPHP----QEIIEFPSVIVSGVTGQITVCFQIYA-------- 57
Q FDY +++DFEATC + P QEIIEFP V +S F Y
Sbjct: 62 QQFDYLLILDFEATCQENSLGPMLPVQEIIEFPVVQLSTSDWSEIRRFHQYVRPTECPKL 121
Query: 58 ------------------------LFLHDNW-QQHMGVTPTNFAVVTWSDWDCQVMLESE 92
L D W ++ + NFA VT DWD +V L +E
Sbjct: 122 SSFCTTLTGIIQEMVDDKPTISNVLENFDEWMKEDSRLEKGNFAFVTCGDWDLKVALTNE 181
Query: 93 CRFKNIPKPSYFNRWINLRVP-------FSKGDVRCNLKEAVELGWHGRVHCGLDDSMNI 145
+FKN+ P YF +WIN++ F+KG L + +L GR H G+DD NI
Sbjct: 182 AKFKNLKIPEYFTQWINVKKAYAAHTNHFAKG--MTQLLKIYDLQHKGRHHSGIDDVANI 239
Query: 146 ARLLAVIMQRGFKFSITKS 164
++ + + G + IT S
Sbjct: 240 CEIVRCLGKDGHNYRITSS 258
>gi|326925262|ref|XP_003208837.1| PREDICTED: ERI1 exoribonuclease 3-like [Meleagris gallopavo]
Length = 484
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 40/174 (22%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 160 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 219
Query: 57 -------------------ALFLHDNWQQHMG-VTPTNFAV-VTWSDWDCQVMLESECRF 95
L D W G + P+ ++ VT DWD +VML +C++
Sbjct: 220 TELTGIIQGMVDGQPSLQQVLERVDEWMAKEGLLDPSVKSIFVTCGDWDLKVMLPGQCQY 279
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSM 143
+P YF +WINL+ +S + ++ + + L GR H G++ +
Sbjct: 280 LGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNKGLNLQHIGRPHSGIEKEL 333
>gi|428184491|gb|EKX53346.1| hypothetical protein GUITHDRAFT_101048 [Guillardia theta CCMP2712]
Length = 638
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 19/160 (11%)
Query: 14 YFVVVDFEATCDKK-----------IP--HPQEIIEFPSVIVSGVTGQITVCFQIYALFL 60
++ +DFEATCD + +P P EIIEFP V+V +G++ + +
Sbjct: 255 HYAFIDFEATCDDRRGEVGEKEAEAMPGFSPSEIIEFPVVLVESASGKVDSAPEFKEVLA 314
Query: 61 HD-NWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDV 119
+ +W +G+ + T DWD + ML +C +P+P RW+++R FS+
Sbjct: 315 NMLDWLAELGLPEGSVMFATDGDWDLRSMLPRQCELAEVPQPVALQRWVDIRRVFSETLK 374
Query: 120 RCN-----LKEAVELGWHGRVHCGLDDSMNIARLLAVIMQ 154
N + +A+ + + G+ H G+ D+ NIAR+ V+MQ
Sbjct: 375 TGNKGLMSMCQALGINFVGQAHSGICDARNIARVGLVLMQ 414
>gi|226372150|gb|ACO51700.1| Histone mRNA 3-exonuclease 1 [Rana catesbeiana]
Length = 348
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCD--KKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
+DY ++DFEATC+ + EIIEFP V+++ T +I FQ Y
Sbjct: 126 YDYICIIDFEATCEGGNATDYVHEIIEFPIVLLNTRTLEIEDTFQRYVKPEIKPQLSEFC 185
Query: 58 ------------------LFLHD--NW--QQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+ L +W Q+ +G T +A++T WD L +CR
Sbjct: 186 INLTGITQDIIDQADTFPVVLQSVVDWMRQKELG-TKYKYAILTDGSWDMSKFLNMQCRV 244
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
I P + +WIN+R VP ++ + L E + + + GR+H GLDDS NIAR
Sbjct: 245 SRIKYPRFAKKWINIRKCYGNFYKVPRNQTKLTVML-EKLGMSYIGRLHSGLDDSKNIAR 303
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + + + + T Q +T S +
Sbjct: 304 IAIHMLQDGCELRVNERMHTGQLMTVSSSL 333
>gi|363739793|ref|XP_424602.3| PREDICTED: ERI1 exoribonuclease 2 [Gallus gallus]
Length = 671
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 92/214 (42%), Gaps = 56/214 (26%)
Query: 7 QKLQDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY-------- 56
++ +FD+ +V+DFE+TC D + P EIIEFP+V+++ TG+I F +
Sbjct: 16 ERRSEFDFLLVLDFESTCWRDARQRRP-EIIEFPAVLLNAATGRIEAEFHTFVQPQEQPV 74
Query: 57 ------------------ALFLHD------NWQQHM---------GVTPTNF-------A 76
+ LH W Q + P N
Sbjct: 75 LSEFCTTLTGVTQKQVDEGVPLHICLSQFLKWLQEIQKEKKILFSSDIPRNAIPEAKLCT 134
Query: 77 VVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGW 131
VTW+DWD V L EC+ K + KP FN WI+L+ + K + V L +
Sbjct: 135 FVTWTDWDLGVCLHYECKRKQLWKPDIFNSWIDLKATYRAFYNRKPKGLSGALQYVGLAF 194
Query: 132 HGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
GR H GLDDS N ARL ++ G ITKSL
Sbjct: 195 VGREHSGLDDSRNTARLAWRLICDGCVLKITKSL 228
>gi|241686335|ref|XP_002411687.1| exonuclease, putative [Ixodes scapularis]
gi|215504479|gb|EEC13973.1| exonuclease, putative [Ixodes scapularis]
Length = 337
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 76/172 (44%), Gaps = 42/172 (24%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY----------- 56
Q FDYF+V+DFEATC +K PHPQEIIEFP + V+G + Q+ F Y
Sbjct: 101 QPFDYFLVLDFEATCSREKPPPHPQEIIEFPVLKVNGRSFQVESTFHQYVQPRVHRELSS 160
Query: 57 ---------------------ALFLHDNW---QQHMGVTPTNFAVVTWSDWDCQVMLESE 92
L W + +G A VT+ DWD Q ML S+
Sbjct: 161 FCTELTGIIQDMVDEQPFFEEVLEKFHQWMCSEGLLGPPEKRVAFVTFGDWDLQKMLPSQ 220
Query: 93 CRFKNIPKPSYFNRWINLRVPF--SKGDVRCNLKEAVE---LGWHGRVHCGL 139
C + IP P Y WINL+ F + G L E +E L GR H G+
Sbjct: 221 CSYFKIPVPEYLTSWINLKKAFVEATGHWPKTLPETLEYCRLEQVGRHHSGI 272
>gi|332244613|ref|XP_003271468.1| PREDICTED: 3'-5' exoribonuclease 1 [Nomascus leucogenys]
Length = 349
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELG-TKYKYSILTDGSWDMSKFLNIQCQL 245
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP S+ + L E + + + GR+HCGLDDS NIAR
Sbjct: 246 SRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRLHCGLDDSKNIAR 304
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + I + + Q ++ S +
Sbjct: 305 IAVRMLQDGCELRINEKMHAGQLMSVSSSL 334
>gi|403307233|ref|XP_003944109.1| PREDICTED: uncharacterized protein LOC101050958 [Saimiri
boliviensis boliviensis]
Length = 745
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 46/208 (22%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 523 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTRLSDFC 582
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 583 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELG-TKYKYSILTDGSWDMSKFLNIQCQI 641
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
I PS+ +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR
Sbjct: 642 SRIKYPSFAKKWINIRKSYGNFYKVPRSQTKLAIML-EKLGMDYDGRPHCGLDDSKNIAR 700
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDS 175
+ ++Q G + I + + Q ++ S
Sbjct: 701 IAVRMLQDGCELRINEKMHAGQLMSVSS 728
>gi|410918560|ref|XP_003972753.1| PREDICTED: 3'-5' exoribonuclease 1-like [Takifugu rubripes]
Length = 340
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 42/200 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYAL-----FLHD-- 62
+DY VVDFEATC+ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 118 YDYICVVDFEATCEVDNPSDFHHEIIEFPMVLINTHTLEIVDSFQEYVKPELNPQLSDFC 177
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
W Q + T +A++T WD L +C+
Sbjct: 178 VKLTGITQKMVDEADSFPAVLERVVAWLQERELGTKYKYAILTDGSWDMSKFLNIQCQIS 237
Query: 97 NIPKPSYFNRWINLRVPF------SKGDVRCN-LKEAVELGWHGRVHCGLDDSMNIARLL 149
I P + +WIN+R + S+ + + + E + L + GR HCGLDDS NIAR+
Sbjct: 238 RIRYPQFAKKWINIRKSYRNFYKVSRTQTKLSTMLEKLGLTYSGRPHCGLDDSRNIARIA 297
Query: 150 AVIMQRGFKFSITKSLTTPQ 169
++Q G + + + + Q
Sbjct: 298 VRMLQDGCQLRVNERMHAGQ 317
>gi|47218345|emb|CAG04177.1| unnamed protein product [Tetraodon nigroviridis]
Length = 340
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
+DY VVDFEATC+ P + EIIEFP V+++ T +I F+ Y
Sbjct: 118 YDYICVVDFEATCEVDNPSDYHHEIIEFPMVLINTHTLEIVDSFREYVKPELNPQLSDFC 177
Query: 58 --------------------LFLHDNWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
L W Q + T +A++T WD L +C+
Sbjct: 178 VKLTGITQKMVDKAEPFPAVLERAVAWLQERELGTKYKYAILTDGSWDMSKFLNIQCQIS 237
Query: 97 NIPKPSYFNRWINLRVPF------SKGDVRCN-LKEAVELGWHGRVHCGLDDSMNIARLL 149
I P + +WIN+R + S+ + + + E + L ++GR HCGLDDS NIAR+
Sbjct: 238 RIRYPQFAKKWINIRKAYRNFYKVSRTQTKLSTMLEKLGLTYNGRPHCGLDDSRNIARIA 297
Query: 150 AVIMQRGFKFSITKSL 165
++Q G + + + +
Sbjct: 298 VRMLQDGCQLRVNERM 313
>gi|161612020|gb|AAI55978.1| hypothetical protein LOC548900 [Xenopus (Silurana) tropicalis]
gi|161612114|gb|AAI55988.1| hypothetical protein LOC548900 [Xenopus (Silurana) tropicalis]
Length = 345
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL----------- 58
+DY V+DFEATC++ + EIIEFP V+++ T +I FQ Y
Sbjct: 123 YDYICVIDFEATCEEGNSTDYTHEIIEFPIVLLNTHTLEIEDVFQRYVRPEINPQLSEFC 182
Query: 59 -----FLHD----------------NW--QQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
D +W ++ +G T +A++T WD L +CR
Sbjct: 183 VNLTGITQDIVDKSDIFPDVLRSVVDWMREKELG-TKYKYAILTDGSWDMSKFLNMQCRV 241
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP ++ + L E + + + GR+H G+DDS NIAR
Sbjct: 242 SRLKYPRFAKKWINIRKSYGNFYKVPRTQTKLTTML-EKLGMTYDGRLHSGVDDSKNIAR 300
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ A ++Q G + + + + Q +T S +
Sbjct: 301 IAAHMLQDGCELRVNERMHAGQLMTVSSSL 330
>gi|307169180|gb|EFN61996.1| Prion protein-interacting protein [Camponotus floridanus]
Length = 236
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 41/199 (20%)
Query: 9 LQDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQITVCFQIYA---------- 57
+Q F+Y +V+DFEATCDK++ PQEIIE P V +S ++ F Y
Sbjct: 21 VQKFEYLLVMDFEATCDKQVTLQPQEIIELPCVALSTSDWKLKDTFHAYIRPRVYPKLTP 80
Query: 58 --LFLHDNWQQHMGVTP----------------------TNFAVVTWSDWDCQVMLESEC 93
+ L Q+ + P + VT +WD + ML ++C
Sbjct: 81 FCIELTGIMQEMVDDQPCFADVFSKFRKWLIEGGYFDRSDKSSFVTCGNWDLKTMLPNQC 140
Query: 94 RFKNIPKPSYFNRWINLRVPF--SKGDVRCNLKEA---VELGWHGRVHCGLDDSMNIARL 148
NI P F +WI L+ F S G +LK+ ++L GR+H G+DD N+ +
Sbjct: 141 NLDNITLPDEFKQWIELKHTFCDSTGYYPRSLKDMLTRLDLSMQGRLHSGIDDVKNMVSI 200
Query: 149 LAVIMQR-GFKFSITKSLT 166
+ + +R +F IT SLT
Sbjct: 201 IQALKERYNTQFKITSSLT 219
>gi|297698262|ref|XP_002826233.1| PREDICTED: ERI1 exoribonuclease 2 isoform 2 [Pongo abelii]
Length = 691
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 97/228 (42%), Gaps = 57/228 (25%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQH-----MGVT-PTNFAV-----VT 79
++H QQ GV+ P+ V VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-------KGDVRCNLKEAVELGWH 132
WSDWD V LE EC+ K + K S + ++R + K + V + +
Sbjct: 152 WSDWDLGVCLEYECKRKQLFKTSEKSLKDDIRAKSTARLFYRRKPKGLSGALQEVGIEFS 211
Query: 133 GRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWN 180
GR H GLDDS N + L +++ G IT+SL S++ N
Sbjct: 212 GREHSGLDDSRNTSLLAWKMIRDGCVMKITRSLNKVPSKKNSSILARN 259
>gi|57530089|ref|NP_001006450.1| 3'-5' exoribonuclease 1 [Gallus gallus]
gi|53130526|emb|CAG31592.1| hypothetical protein RCJMB04_8i1 [Gallus gallus]
Length = 327
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 46/208 (22%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
+DY VVDFEATC++ P EIIEFP V+++ T +I FQ Y
Sbjct: 105 YDYICVVDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVKPEINPKLSEFC 164
Query: 58 ------------------LFLHD--NW--QQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
L + +W Q+ +G T ++ ++T WD L +CR
Sbjct: 165 VGLTGITQDIVDKADTFPQVLQNVVDWMRQRELG-TKYSYCMLTDGSWDMSKFLNIQCRV 223
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
I PS+ +WIN+R VP ++ + L E + + + GR H GLDDS NIAR
Sbjct: 224 SRIKHPSFAKKWINIRKSYGNFYKVPRNQTKLMIML-EKLGMSYDGRPHSGLDDSKNIAR 282
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDS 175
+ ++Q G + + + + Q +T S
Sbjct: 283 IAIRMLQDGCQLRVNEKMHAGQLMTVSS 310
>gi|328877052|gb|EGG25415.1| putative RNase III [Dictyostelium fasciculatum]
Length = 297
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 90/210 (42%), Gaps = 56/210 (26%)
Query: 10 QDFDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q F Y VV+DFEATCD KI + QE+IEFPSVIV Q+ F Y
Sbjct: 59 QPFKYIVVLDFEATCDDGTKIKN-QEVIEFPSVIVDVEKQQVVAQFAEYVRPVYNPTLSA 117
Query: 59 ----------------------------FLHDN--WQQHMGVTPTN-FAVVTWSDWDCQV 87
FL DN Q++ N FAV+ DWD
Sbjct: 118 FCTQLTGIQQATVDSADIFENVFKRHFKFLVDNKLLQENGARNEENPFAVLCCGDWDLLQ 177
Query: 88 MLESECRFKN--------IPKPSYFNRWINLRVPFSK-----GDVRCNLKEAVELGWHGR 134
ML ++CR +P P+YF WIN++ F K N+ + + GR
Sbjct: 178 MLPAQCRINKNESGELHYLPPPNYFTEWINVKKIFEKNYNMSAYGMANMLRQLSIPLVGR 237
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKS 164
H G+DD NI+ ++ ++++G F IT +
Sbjct: 238 HHSGIDDCRNISSIVIAMLKKGCLFEITTT 267
>gi|345322776|ref|XP_001508919.2| PREDICTED: 3'-5' exoribonuclease 1-like [Ornithorhynchus anatinus]
Length = 387
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 46/202 (22%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY V+DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 165 YDYICVIDFEATCEEGNPPEFIHEIIEFPIVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 224
Query: 63 -------------------------NW--QQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
W Q+ +G T ++++T WD L +CR
Sbjct: 225 INLTGITQDVVDRADTFPQVLQKVVEWMRQKELG-TKYKYSILTDGSWDMSKFLTIQCRI 283
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
++ P++ +WIN+R VP S+ + L E + + + GR H GLDDS NIAR
Sbjct: 284 SHLKYPAFAKKWINIRKSYGNFYKVPRSQTKLAIML-EKLGMSYAGRPHSGLDDSKNIAR 342
Query: 148 LLAVIMQRGFKFSITKSLTTPQ 169
+ ++Q G + + + + Q
Sbjct: 343 IAVRMLQDGCQLRVNEKMHAGQ 364
>gi|118400656|ref|XP_001032650.1| exonuclease family protein [Tetrahymena thermophila]
gi|89286993|gb|EAR84987.1| exonuclease family protein [Tetrahymena thermophila SB210]
Length = 215
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 86/202 (42%), Gaps = 57/202 (28%)
Query: 11 DFDYFVVVDFEATCDKKIPHP-QEIIEFPSVIVSGVTGQIT-VCFQIY------------ 56
DFDY +++DFEATC+K + QEIIEFP V++ QI V F Y
Sbjct: 10 DFDYLLILDFEATCEKNVKLECQEIIEFPVVVLDVKNQQILDVFFHHYIKPSVNPKLTAF 69
Query: 57 -------------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLES 91
LFL N + ++F +T D+D L
Sbjct: 70 CTELTGIKQEQVDNGISLQEALAQLTLFLEQN-----KLIGSSFTFITCGDFDLGNCLRR 124
Query: 92 ECRFKNIPKPSYFNRWINLRVPFSK---------GDVR----CNLKEAVELGWHGRVHCG 138
E +K I P Y +IN++ F K GD R + + + L G H G
Sbjct: 125 EALYKKIEIPQYLKNYINIKKVFPKQYYPKQKKEGDNRLPDMVGMLQGLNLKLDGHHHSG 184
Query: 139 LDDSMNIARLLAVIMQRGFKFS 160
+DDS NIA++ ++Q+GFKF+
Sbjct: 185 IDDSKNIAKIALTLLQKGFKFN 206
>gi|297682312|ref|XP_002818868.1| PREDICTED: 3'-5' exoribonuclease 1 [Pongo abelii]
Length = 349
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T ++++T WD L +C+
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLS 246
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR+
Sbjct: 247 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHCGLDDSKNIARI 305
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 306 AVRMLQDGCELRINEKMHAGQLMSVSSSL 334
>gi|62859267|ref|NP_001016146.1| exoribonuclease 1 [Xenopus (Silurana) tropicalis]
gi|89268181|emb|CAJ81479.1| exonuclease 1 [Xenopus (Silurana) tropicalis]
Length = 345
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
+DY V+DFEATC++ + EIIEFP V+++ T +I FQ Y
Sbjct: 123 YDYICVIDFEATCEEGNSTDYTHEIIEFPIVLLNTHTLEIEDVFQRYVRPEINPQLSEFC 182
Query: 58 --------------------LFLHDNW--QQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
L +W ++ +G T +A++T WD L +CR
Sbjct: 183 VNLTGITQDIVDKSDIFPDVLRSVVDWMREKELG-TKYKYAILTDGSWDMSKFLNMQCRV 241
Query: 96 KNIPKPSYFNRWINL--------RVPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+ +VP ++ + L E + + + GR+H G+DDS NIAR
Sbjct: 242 SRLKYPRFAKKWINICKSYGNFYKVPRTQTKLTTML-EKLGMTYDGRLHSGVDDSKNIAR 300
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ A ++Q G + + + + Q +T S +
Sbjct: 301 IAAHMLQDGCELRVNERMHAGQLMTVSSSL 330
>gi|410956121|ref|XP_003984693.1| PREDICTED: 3'-5' exoribonuclease 1 [Felis catus]
Length = 349
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 92/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T + ++T WD L +CR
Sbjct: 187 INLTGITQDQVDRADTFPQVLKKVIDWMKSKELGTKYKYCILTDGSWDMSKFLNIQCRLS 246
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 247 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 305
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S M
Sbjct: 306 AVRMLQDGCELRINEKMHAGQLMSVSSSM 334
>gi|387015830|gb|AFJ50034.1| 3'-5' exoribonuclease 1-like [Crotalus adamanteus]
Length = 338
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 46/198 (23%)
Query: 12 FDYFVVVDFEATCDKKIPHPQ---EIIEFPSVIVSGVTGQITVCFQIYAL-----FLHD- 62
++Y V+DFEATC++K P+ EIIEFP V+++ T QI FQ Y L D
Sbjct: 117 YNYICVIDFEATCEEK-NQPEFIHEIIEFPIVLLNTQTLQIEDTFQQYVKPEINPQLSDF 175
Query: 63 --------------------------NW--QQHMGVTPTNFAVVTWSDWDCQVMLESECR 94
+W Q+ +G + +++++T WD L +CR
Sbjct: 176 CINLTGISQELVEKADEFPKVLQRVVDWMKQKELG-SKYSYSILTDGSWDMSKFLNIQCR 234
Query: 95 FKNIPKPSYFNRWINLRVPFSK--GDVRCNLK-----EAVELGWHGRVHCGLDDSMNIAR 147
+ PS+ +WIN+R + RC K E + + + GR H GLDDS NIAR
Sbjct: 235 ISRLKYPSFAKKWINIRKSYGNFYKVPRCQTKLSTMLEKLGMDYDGRPHSGLDDSKNIAR 294
Query: 148 LLAVIMQRGFKFSITKSL 165
+ ++Q G + + + L
Sbjct: 295 IAIRMLQDGCELRVNERL 312
>gi|380790199|gb|AFE66975.1| 3'-5' exoribonuclease 1 [Macaca mulatta]
gi|383422639|gb|AFH34533.1| 3'-5' exoribonuclease 1 [Macaca mulatta]
gi|384944050|gb|AFI35630.1| 3'-5' exoribonuclease 1 [Macaca mulatta]
Length = 349
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T ++++T WD L +C+
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLS 246
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR+
Sbjct: 247 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHCGLDDSKNIARI 305
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 306 AVRMLQDGCELRINEKIHAGQLMSVSSSL 334
>gi|402877563|ref|XP_003902493.1| PREDICTED: 3'-5' exoribonuclease 1 [Papio anubis]
Length = 349
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T ++++T WD L +C+
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLS 246
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR+
Sbjct: 247 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHCGLDDSKNIARI 305
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 306 AVRMLQDGCELRINEKIHAGQLMSVSSSL 334
>gi|449270665|gb|EMC81322.1| 3'-5' exoribonuclease 1, partial [Columba livia]
Length = 312
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 92/208 (44%), Gaps = 44/208 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
+DY VVDFEATC++ P EIIEFP V+++ T +I FQ Y
Sbjct: 90 YDYICVVDFEATCEEGNPPEFVHEIIEFPVVLLNTRTLEIEDTFQQYVKPEINPKLSNFC 149
Query: 58 ------------------LFLHD--NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
L + W + + T ++++T WD L +CR
Sbjct: 150 INLTGITQEVVDKADTFPQVLQNVIEWMRQWELGTKYTYSMLTDGSWDMSKFLNIQCRIS 209
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
I PS+ +WIN+R VP ++ + L E + + + GR H GLDDS NIAR+
Sbjct: 210 RIKYPSFAKKWINIRKSYGNFYKVPRNQTKLTIML-EQLGMNYDGRPHSGLDDSKNIARI 268
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSV 176
++Q G + + + + Q +T S
Sbjct: 269 AIRMLQDGCELRVNEQMHAGQLMTVSSA 296
>gi|355779519|gb|EHH63995.1| 3'-5' exoribonuclease 1 [Macaca fascicularis]
Length = 349
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELG-TKYKYSILTDGSWDMSKFLNIQCQL 245
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR
Sbjct: 246 SRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHCGLDDSKNIAR 304
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + I + + Q ++ S +
Sbjct: 305 IAVRMLQDGCELRINEKIHAGQLMSVSSSL 334
>gi|355697746|gb|EHH28294.1| 3'-5' exoribonuclease 1 [Macaca mulatta]
Length = 349
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELG-TKYKYSILTDGSWDMSKFLNIQCQL 245
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR
Sbjct: 246 SRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHCGLDDSKNIAR 304
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + I + + Q ++ S +
Sbjct: 305 IAVRMLQDGCELRINEKIHAGQLMSVSSSL 334
>gi|114623463|ref|XP_001136735.1| PREDICTED: 3'-5' exoribonuclease 1 isoform 1 [Pan troglodytes]
gi|410057587|ref|XP_003954240.1| PREDICTED: 3'-5' exoribonuclease 1 [Pan troglodytes]
gi|410216504|gb|JAA05471.1| exoribonuclease 1 [Pan troglodytes]
gi|410253534|gb|JAA14734.1| exoribonuclease 1 [Pan troglodytes]
gi|410287450|gb|JAA22325.1| exoribonuclease 1 [Pan troglodytes]
gi|410333459|gb|JAA35676.1| exoribonuclease 1 [Pan troglodytes]
Length = 349
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQL 245
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR
Sbjct: 246 SRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHCGLDDSKNIAR 304
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + I + + Q ++ S +
Sbjct: 305 IAVRMLQDGCELRINEKMHAGQLMSVSSSL 334
>gi|31543184|ref|NP_699163.2| 3'-5' exoribonuclease 1 [Homo sapiens]
gi|45476938|sp|Q8IV48.3|ERI1_HUMAN RecName: Full=3'-5' exoribonuclease 1; AltName: Full=3'-5'
exonuclease ERI1; AltName: Full=Eri-1 homolog; AltName:
Full=Histone mRNA 3'-end-specific exoribonuclease;
AltName: Full=Histone mRNA 3'-exonuclease 1; AltName:
Full=Protein 3'hExo; Short=HEXO
gi|23271401|gb|AAH35279.1| Exoribonuclease 1 [Homo sapiens]
gi|33520761|gb|AAQ21219.1| 3' exoribonuclease [Homo sapiens]
gi|119585973|gb|EAW65569.1| three prime histone mRNA exonuclease 1, isoform CRA_b [Homo
sapiens]
gi|119585974|gb|EAW65570.1| three prime histone mRNA exonuclease 1, isoform CRA_b [Homo
sapiens]
gi|123979876|gb|ABM81767.1| three prime histone mRNA exonuclease 1 [synthetic construct]
gi|123994641|gb|ABM84922.1| three prime histone mRNA exonuclease 1 [synthetic construct]
Length = 349
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQL 245
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR
Sbjct: 246 SRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHCGLDDSKNIAR 304
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + I + + Q ++ S +
Sbjct: 305 IAVRMLQDGCELRINEKMHAGQLMSVSSSL 334
>gi|426358763|ref|XP_004046664.1| PREDICTED: 3'-5' exoribonuclease 1 [Gorilla gorilla gorilla]
Length = 349
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQL 245
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR
Sbjct: 246 SRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHCGLDDSKNIAR 304
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + I + + Q ++ S +
Sbjct: 305 IAVRMLQDGCELRINEKMHAGQLMSVSSSL 334
>gi|158255560|dbj|BAF83751.1| unnamed protein product [Homo sapiens]
gi|261858590|dbj|BAI45817.1| exoribonuclease 1 [synthetic construct]
Length = 349
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQL 245
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR
Sbjct: 246 SRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHCGLDDSKNIAR 304
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + I + + Q ++ S +
Sbjct: 305 IAVRMLQDGCELRINEKMHAGQLMSVSSSL 334
>gi|166998659|ref|NP_001107798.1| Snipper [Tribolium castaneum]
gi|156447793|gb|ABU63675.1| Snipper [Tribolium castaneum]
Length = 232
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 85/206 (41%), Gaps = 52/206 (25%)
Query: 10 QDFDYFVVVDFEATC---DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA--------- 57
Q FDY +V+DFEATC +P EIIEFP V+ +I FQ Y
Sbjct: 26 QPFDYLLVLDFEATCWSNGDPRKNPAEIIEFPVVLYDVKNAKIIAEFQQYVMPVENPKLS 85
Query: 58 -----------------------LFLHDNW-QQHMGVTPTNF-----------AVVTWSD 82
L L W + M + +F A TWSD
Sbjct: 86 DFCTELTGIQQHQVDNGVPLQACLLLFSRWVAEKMSLYDMDFPNGESQATKTCAFATWSD 145
Query: 83 WDCQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDVR--CNLKEAV-ELG--WHGRVHC 137
WD L EC KNI + +WI++R F + R L A+ ELG + G HC
Sbjct: 146 WDLGTCLRKECIRKNIRIEKMYRKWIDIRALFKRYIRRPFIGLAGALAELGLTFEGTEHC 205
Query: 138 GLDDSMNIARLLAVIMQRGFKFSITK 163
GL D+ N ARL+ ++ +G +T+
Sbjct: 206 GLHDARNTARLVGKMVDKGVVLQLTR 231
>gi|397467350|ref|XP_003805385.1| PREDICTED: 3'-5' exoribonuclease 1 [Pan paniscus]
Length = 345
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 123 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 182
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T ++++T WD L +C+
Sbjct: 183 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLS 242
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR+
Sbjct: 243 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHCGLDDSKNIARI 301
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 302 AVRMLQDGCELRINEKMHAGQLMSVSSSL 330
>gi|327279889|ref|XP_003224688.1| PREDICTED: 3'-5' exoribonuclease 1-like [Anolis carolinensis]
Length = 343
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 46/205 (22%)
Query: 12 FDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL-----FLHD-- 62
+DY V+DFEATC++ ++ EIIEFP V+++ T +I FQ Y L D
Sbjct: 122 YDYICVIDFEATCEEGNQLEFTHEIIEFPIVLINTRTLEIEDTFQQYVKPVINPQLSDFC 181
Query: 63 -------------------------NW--QQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W Q+ +G + ++A++T WD L +CR
Sbjct: 182 INLTGISQERVDKADEFPKVLQSVIDWMKQKELG-SRYSYAILTDGSWDMSKFLNIQCRV 240
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P++ +WIN+R VP ++ + L E + + + GR H GLDDS NIA+
Sbjct: 241 NRLRYPAFAKKWINIRKSYGNFYKVPRNQTKLSTML-EKLGMDYDGRPHSGLDDSRNIAQ 299
Query: 148 LLAVIMQRGFKFSITKSLTTPQDIT 172
+ ++Q G + + ++L Q +T
Sbjct: 300 IAIRMLQDGCELRVNETLYDGQLMT 324
>gi|340368534|ref|XP_003382806.1| PREDICTED: ERI1 exoribonuclease 3-like [Amphimedon queenslandica]
Length = 209
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 84/196 (42%), Gaps = 42/196 (21%)
Query: 12 FDYFVVVDFEATCDKK---IPHPQEIIEFPSVIVSGVTGQITVCFQIYAL-----FLHDN 63
Y++V+DFEATC+ P PQEIIEFP + V+ T + F Y L
Sbjct: 10 LSYYLVLDFEATCNASHLPSPRPQEIIEFPVLAVNAKTLETEKIFHTYVRPTSHPLLTPF 69
Query: 64 WQQHMGVT-------PT----------------------NFAVVTWSDWDCQVMLESECR 94
Q G+T PT F VT DWD + ML +C+
Sbjct: 70 CTQLTGITQSQVDGQPTLPEVLRSFHSWLETNGFLEPSVRFCFVTCGDWDLKTMLPGQCK 129
Query: 95 FKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+ + P P YF W+N++ F K ++ E ++ GR H G+DDS NIA++L
Sbjct: 130 YFDWPVPEYFRSWMNIKFVFQRLTGVKAKGMPHMLEYFKIPLEGRHHSGIDDSRNIAKIL 189
Query: 150 AVIMQRGFKFSITKSL 165
+ + T +L
Sbjct: 190 TRLARIESNLQPTTTL 205
>gi|255635608|gb|ACU18154.1| unknown [Glycine max]
Length = 197
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 43/51 (84%), Gaps = 1/51 (1%)
Query: 7 QKLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
++ Q+F YFVV+DFEATCDK K PHPQEIIEFPSVIVS +TGQ+ CFQ Y
Sbjct: 132 EQYQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSITGQLEACFQTY 182
>gi|407425460|gb|EKF39438.1| hypothetical protein MOQ_000337 [Trypanosoma cruzi marinkellei]
Length = 541
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 96/221 (43%), Gaps = 60/221 (27%)
Query: 1 PNPFLPQKLQD--------FDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQIT 50
P P PQ+ Q+ FD +VV+DFEATC++ ++ P EIIEFP V++ + I
Sbjct: 49 PPPRKPQERQENELPPSPSFDAYVVLDFEATCERNRRLEEP-EIIEFPMVLIDARSHHIL 107
Query: 51 VCFQIYAL-----FLHDNWQQHMGVTPT-------------------------------N 74
FQ Y L D + G+T + +
Sbjct: 108 TEFQRYVRPVVNPILSDFCTELTGITQSVVDTAKTFPLVFDAALEFLRGSGYGEAPPLRS 167
Query: 75 FAVVTWSDWDCQVMLESECRFKN-----IPKPSYFNRWINLRVPF-----SKGDVRCNLK 124
+ VT DWD + ML S+ R I P F RW NL+VP +K +LK
Sbjct: 168 YLFVTCGDWDLKTMLPSQLRTTAKTGTAIVAPPTFRRWCNLKVPMRAIAPTKAGGVFDLK 227
Query: 125 E---AVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
E AV L GR H G+DD NIA ++ +++RG + T
Sbjct: 228 EMLAAVGLPLKGRHHSGIDDCRNIASIVQELLRRGHVIAPT 268
>gi|119585972|gb|EAW65568.1| three prime histone mRNA exonuclease 1, isoform CRA_a [Homo
sapiens]
Length = 288
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 66 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 125
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T ++++T WD L +C+
Sbjct: 126 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLS 185
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR+
Sbjct: 186 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHCGLDDSKNIARI 244
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 245 AVRMLQDGCELRINEKMHAGQLMSVSSSL 273
>gi|45476845|sp|Q7TMF2.2|ERI1_MOUSE RecName: Full=3'-5' exoribonuclease 1; AltName: Full=3'-5'
exonuclease ERI1; AltName: Full=Eri-1 homolog; AltName:
Full=Histone mRNA 3'-exonuclease 1
gi|28204890|gb|AAH46412.1| Exoribonuclease 1 [Mus musculus]
gi|74179153|dbj|BAE42771.1| unnamed protein product [Mus musculus]
gi|148703505|gb|EDL35452.1| three prime histone mRNA exonuclease 1 [Mus musculus]
Length = 345
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYAL----------- 58
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y
Sbjct: 123 YDYICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLSEFC 182
Query: 59 -----FLHD----------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
D W + + T + ++T WD L +CR
Sbjct: 183 IGLTGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLS 242
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P++ +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 243 RLKHPAFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 301
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 302 AVRMLQDGCELRINEKILGGQLMSVSSSL 330
>gi|194226477|ref|XP_001915858.1| PREDICTED: 3'-5' exoribonuclease 1 [Equus caballus]
Length = 349
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +CR
Sbjct: 187 INLTGITQDLVDGADTFPQVLRKVVDWMKLKELG-TKYKYSILTDGSWDMSKFLNIQCRL 245
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIAR
Sbjct: 246 SRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIAR 304
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + I + + Q ++ S +
Sbjct: 305 IAVRMLQDGCELRINEKMHAGQLMSVSSSL 334
>gi|270002199|gb|EEZ98646.1| hypothetical protein TcasGA2_TC001174 [Tribolium castaneum]
Length = 232
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 85/206 (41%), Gaps = 52/206 (25%)
Query: 10 QDFDYFVVVDFEATC---DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA--------- 57
Q FDY +V+DFEATC +P EIIEFP V+ +I FQ Y
Sbjct: 26 QPFDYLLVLDFEATCWSNGDPRKNPAEIIEFPVVLYDVKNAKIIAEFQQYVMPVENPKLS 85
Query: 58 -----------------------LFLHDNW-QQHMGVTPTNF-----------AVVTWSD 82
L L W + M + +F A TWSD
Sbjct: 86 DFCTELTGIQQHQVDNGVPLQACLLLFSRWVAEKMRLYDMDFPNGESQAAKTCAFATWSD 145
Query: 83 WDCQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDVR--CNLKEAV-ELG--WHGRVHC 137
WD L EC KNI + +WI++R F + R L A+ ELG + G HC
Sbjct: 146 WDLGTCLRKECIRKNIRIEKMYRKWIDIRALFKRYIRRPFIGLSGALAELGLTFEGTEHC 205
Query: 138 GLDDSMNIARLLAVIMQRGFKFSITK 163
GL D+ N ARL+ ++ +G +T+
Sbjct: 206 GLHDARNTARLVGKMVDKGVVLQLTR 231
>gi|431902290|gb|ELK08791.1| 3'-5' exoribonuclease 1 [Pteropus alecto]
Length = 349
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTNTLEIEDTFQQYVRPEVNTQLSDFC 186
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T + ++T WD L +C+
Sbjct: 187 INLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCQLS 246
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + +G+ GR H GLDDS NIAR+
Sbjct: 247 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMGYDGRPHSGLDDSKNIARI 305
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 306 AVRMLQDGCELRINEKMHAGQLMSVSSSL 334
>gi|119627447|gb|EAX07042.1| prion protein interacting protein, isoform CRA_a [Homo sapiens]
Length = 213
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 63/136 (46%), Gaps = 34/136 (25%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 63 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 122
Query: 57 -------------------ALFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 123 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 182
Query: 96 KNIPKPSYFNRWINLR 111
+P YF +WINL+
Sbjct: 183 LGLPVADYFKQWINLK 198
>gi|26379605|dbj|BAB29127.2| unnamed protein product [Mus musculus]
Length = 345
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYAL----------- 58
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y
Sbjct: 123 YDYICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNDQLSEFC 182
Query: 59 -----FLHD----------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
D W + + T + ++T WD L +CR
Sbjct: 183 IGLTGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLS 242
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P++ +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 243 RLKHPAFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 301
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 302 AIRMLQDGCELRINEKILGGQLMSVSSSL 330
>gi|165905605|ref|NP_080343.4| 3'-5' exoribonuclease 1 [Mus musculus]
gi|26380424|dbj|BAB29333.2| unnamed protein product [Mus musculus]
gi|74228094|dbj|BAE38007.1| unnamed protein product [Mus musculus]
Length = 345
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYAL----------- 58
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y
Sbjct: 123 YDYICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNDQLSEFC 182
Query: 59 -----FLHD----------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
D W + + T + ++T WD L +CR
Sbjct: 183 IGLTGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLS 242
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P++ +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 243 RLKHPAFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 301
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 302 AIRMLQDGCELRINEKILGGQLMSVSSSL 330
>gi|344281397|ref|XP_003412466.1| PREDICTED: 3'-5' exoribonuclease 1-like [Loxodonta africana]
Length = 388
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 46/202 (22%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y
Sbjct: 166 YDYICIIDFEATCEEGNPPEFIHEIIEFPIVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 225
Query: 58 --------------------LFLHDNWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
L +W + +G T ++++T WD L +C+
Sbjct: 226 INLTGITQDQVDRADTFPQVLKKVTDWMKLKELG-TKYKYSILTDGSWDMNKFLNIQCQL 284
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + RWIN+R VP S+ + L E + + + GR H GLDDS NIAR
Sbjct: 285 SRLRYPPFAKRWINIRKSYGNFYKVPRSQTKLTIML-EKLGMSYEGRPHSGLDDSKNIAR 343
Query: 148 LLAVIMQRGFKFSITKSLTTPQ 169
+ ++Q G + + + + + Q
Sbjct: 344 IAVRMLQDGCELRVNEKIQSGQ 365
>gi|343958098|dbj|BAK62904.1| histone mRNA 3'-exonuclease 1 [Pan troglodytes]
Length = 271
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 49 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 108
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
W + + T ++++T WD L +C+
Sbjct: 109 ISLTGITQDQVDRADTFPQVLKKVIEWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLS 168
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR+
Sbjct: 169 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHCGLDDSKNIARI 227
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 228 AVRMLQDGCELRINEKMHAGQLMSVSSSL 256
>gi|71651495|ref|XP_814425.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70879394|gb|EAN92574.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 284
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 96/219 (43%), Gaps = 63/219 (28%)
Query: 6 PQKLQD-----------FDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVC 52
PQKLQ+ FD +VV+DFEATC++ ++ P EIIEFP V++ + +I
Sbjct: 39 PQKLQERQEDELPPSPFFDAYVVLDFEATCERNRRLEEP-EIIEFPMVLIDARSHRILTE 97
Query: 53 FQIYAL-----FLHDNWQQHMGVTPT-------------------------------NFA 76
FQ Y L D + G+ + ++
Sbjct: 98 FQRYVRPVVNPILSDFCTELTGIKQSVVDAAETFPLVFDAALEFLRGSGYGEAPPLRSYL 157
Query: 77 VVTWSDWDCQVMLESECRFKN-----IPKPSYFNRWINLRVPF-----SKGDVRCNLKE- 125
VT DWD + ML S+ R I PS F RW NL+VP +K +L+E
Sbjct: 158 FVTCGDWDLKTMLPSQLRTTEKTGTAIVAPSTFRRWCNLKVPMRTIVPTKARGIFDLREM 217
Query: 126 --AVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
AV L GR H G+DD NIA ++ +++RG + T
Sbjct: 218 LAAVGLPLKGRHHSGIDDCRNIASVVQELLRRGHVIAPT 256
>gi|335307056|ref|XP_003360688.1| PREDICTED: 3'-5' exoribonuclease 1-like [Sus scrofa]
Length = 525
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 48/211 (22%)
Query: 12 FDYFVVVDFEATCDKKIPHPQ---EIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD- 62
+DY ++DFEATC++ P P+ EIIEFP V+++ T +I FQ Y L D
Sbjct: 303 YDYICIIDFEATCEEGNP-PEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDF 361
Query: 63 --------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECR 94
+W + +G T ++++T WD L +CR
Sbjct: 362 CINLTGITQDQVDKADTFPQVLKKVIDWMKLKELG-TKYKYSILTDGSWDMSKFLNIQCR 420
Query: 95 FKNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIA 146
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIA
Sbjct: 421 LSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIA 479
Query: 147 RLLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
R+ ++Q G + + + + Q ++ S +
Sbjct: 480 RIAVRMLQDGCELRVNEKMHAGQLMSVSSSL 510
>gi|405958600|gb|EKC24712.1| 3'-5' exoribonuclease 1 [Crassostrea gigas]
Length = 405
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 41/185 (22%)
Query: 12 FDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY-------------- 56
+DY +++DFEATC + + + EIIEFP+V+V T +I F +
Sbjct: 149 YDYLIIIDFEATCQENNLNYNHEIIEFPAVLVDCHTREIVDEFHEFCKPIINPRLTEFCC 208
Query: 57 ------------------ALFLHDNW--QQHMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
L ++W ++GV T FAVVT WD L+ +C F
Sbjct: 209 GLTGITQDVVDKADEFPAVLERMESWMSSHYLGVDHT-FAVVTDGPWDMSRFLQMQCNFS 267
Query: 97 NIPKPSYFNRWINLRVPFSK--GDVRCNLKEA---VELGWHGRVHCGLDDSMNIARLLAV 151
I P + +WIN+R +S R NL+E + L + G HCGL DS NIAR+
Sbjct: 268 KIHFPHWGKKWINIRKAYSSYYSCKRMNLEEMLINLGLKFQGTQHCGLHDSRNIARIAIQ 327
Query: 152 IMQRG 156
++ G
Sbjct: 328 LLNDG 332
>gi|71662500|ref|XP_818256.1| phosphotransferase [Trypanosoma cruzi strain CL Brener]
gi|70883496|gb|EAN96405.1| phosphotransferase, putative [Trypanosoma cruzi]
Length = 539
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 96/219 (43%), Gaps = 63/219 (28%)
Query: 6 PQKLQD-----------FDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVC 52
PQKLQ+ FD +VV+DFEATC++ ++ P EIIEFP V++ + +I
Sbjct: 39 PQKLQERQEDELPPSPFFDAYVVLDFEATCERNRRLEEP-EIIEFPMVLIDARSHRILTE 97
Query: 53 FQIYAL-----FLHDNWQQHMGVTPT-------------------------------NFA 76
FQ Y L D + G+ + ++
Sbjct: 98 FQRYVRPVVNPILSDFCTELTGIKQSVVDAAETFPLVFDAALEFLRGSGYGEAPPLRSYL 157
Query: 77 VVTWSDWDCQVMLESECRFKN-----IPKPSYFNRWINLRVPF-----SKGDVRCNLKE- 125
VT DWD + ML S+ R I PS F RW NL+VP +K +L+E
Sbjct: 158 FVTCGDWDLKTMLPSQLRTTEKTGTAIVAPSTFRRWCNLKVPMRTIVPTKARGIFDLREM 217
Query: 126 --AVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
AV L GR H G+DD NIA ++ +++RG + T
Sbjct: 218 LAAVGLPLKGRHHSGIDDCRNIASVVQELLRRGHVIAPT 256
>gi|351698003|gb|EHB00922.1| 3'-5' exoribonuclease 1 [Heterocephalus glaber]
Length = 348
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 44/201 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 126 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVKPEINTQLSDFC 185
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T + ++T WD L +C+
Sbjct: 186 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCQLS 245
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ PS+ +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 246 RLKYPSFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 304
Query: 149 LAVIMQRGFKFSITKSLTTPQ 169
++Q G + I + + + Q
Sbjct: 305 AVRMLQDGCELRINEKMHSGQ 325
>gi|341877999|gb|EGT33934.1| hypothetical protein CAEBREN_06895 [Caenorhabditis brenneri]
Length = 215
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 85/206 (41%), Gaps = 52/206 (25%)
Query: 10 QDFDYFVVVDFEATCDKKIPHP----QEIIEFP--------------------------- 38
Q +Y +V+DFEATC + P QEIIEFP
Sbjct: 3 QSLEYLLVLDFEATCQENSKGPMQPVQEIIEFPVVQLRTSDWAEIRRFHQYVRPIECPKL 62
Query: 39 --------SVIVSGVTGQITVCFQIYALFLHDNWQQHMGVTPT-NFAVVTWSDWDCQVML 89
+I V GQ T+ L D W + T NFA VT DWD +V L
Sbjct: 63 TSFCTSLTGIIQEMVDGQPTLS---AVLEDFDAWMKEDSRLKTGNFAFVTCGDWDLKVAL 119
Query: 90 ESECRFKNIPKPSYFNRWINLRVP-------FSKGDVRCNLKEAVELGWHGRVHCGLDDS 142
+E +FKNI P Y +WIN++ F++G L + L GR H G+DD
Sbjct: 120 PNEAKFKNIQIPEYMKQWINVKKAYAAHTNHFARG--MPELLKIYNLKLQGRHHSGIDDV 177
Query: 143 MNIARLLAVIMQRGFKFSITKSLTTP 168
NI ++ + + G + IT S P
Sbjct: 178 ANICEIVRCLGKDGHNYRITGSSDQP 203
>gi|301787585|ref|XP_002929208.1| PREDICTED: 3'-5' exoribonuclease 1-like [Ailuropoda melanoleuca]
Length = 349
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T + ++T WD L +CR
Sbjct: 187 INLTGITQDQVDRADTFPQVLKQVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLS 246
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 247 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 305
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 306 AVRMLQDGCELRINEKMHAGQLMSVSSSL 334
>gi|195999854|ref|XP_002109795.1| hypothetical protein TRIADDRAFT_20827 [Trichoplax adhaerens]
gi|190587919|gb|EDV27961.1| hypothetical protein TRIADDRAFT_20827, partial [Trichoplax
adhaerens]
Length = 229
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 91/215 (42%), Gaps = 56/215 (26%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIV------------------------- 42
Q F Y +++DFEATC D + EIIEFP+V++
Sbjct: 1 QKFSYVIIIDFEATCWKDNSSRYSSEIIEFPAVLLNVLTQQIEAVFHQYVQPTINPKLSE 60
Query: 43 -----SGVTGQ-------ITVCFQIYALFLHD------------NWQQHMGVTPTNFAVV 78
+G+T + + C + +L + N + N V
Sbjct: 61 FCKTLTGITQKQVDDGIPLATCLVSFRKWLDEIIKNKNIRLFNKNCRDAGHKNYYNCIFV 120
Query: 79 TWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLK---EAVELGWHG 133
TWSDWD V L EC+ K I P+ F +WI+LR + + G L E+V L + G
Sbjct: 121 TWSDWDIGVCLYYECKKKQIKLPTEFYQWIDLRALYKRFYGKKPTGLNGSMESVGLKFIG 180
Query: 134 RVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTP 168
R H GLDDS N ARL + ++ G +TK + P
Sbjct: 181 REHSGLDDSKNTARLCSKMVHDGCVLDVTKRIALP 215
>gi|73979366|ref|XP_539997.2| PREDICTED: 3'-5' exoribonuclease 1 [Canis lupus familiaris]
Length = 349
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPELNTQLSDFC 186
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T + ++T WD L +CR
Sbjct: 187 INLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLS 246
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 247 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 305
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 306 AVRMLQDGCELRINEKMHAGQLMSVSSSL 334
>gi|355686523|gb|AER98084.1| exoribonuclease 1 [Mustela putorius furo]
Length = 348
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T + ++T WD L +CR
Sbjct: 187 INLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLS 246
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 247 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 305
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 306 AVRMLQDGCELRINEKMHAGQLMSVSSSL 334
>gi|341890887|gb|EGT46822.1| hypothetical protein CAEBREN_23366 [Caenorhabditis brenneri]
Length = 273
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 86/203 (42%), Gaps = 46/203 (22%)
Query: 10 QDFDYFVVVDFEATCDKKIPHP----QEIIEFPSV------------------------- 40
Q +Y +V+DFEATC + P QEIIEFP V
Sbjct: 61 QSLEYLLVLDFEATCQENARGPMQPVQEIIEFPVVQLRTSDWAEVRRFHQYVRPTECPKL 120
Query: 41 -----IVSGVTGQITVCFQIYALFLHD--NWQQHMGVTPT-NFAVVTWSDWDCQVMLESE 92
++G+ ++ + L D W + T NFA VT DWD +V L +E
Sbjct: 121 TSFCTSLTGIIQEMVDRQPTLSAVLEDFDAWMKEDSRLKTGNFAFVTCGDWDLKVALPNE 180
Query: 93 CRFKNIPKPSYFNRWINLRVP-------FSKGDVRCNLKEAVELGWHGRVHCGLDDSMNI 145
+FKNI P Y +WIN++ F++G L + L GR H G+DD NI
Sbjct: 181 AKFKNIQTPEYMKQWINVKKAYAAHTNHFARG--MPELLKIYNLKLQGRHHSGIDDVANI 238
Query: 146 ARLLAVIMQRGFKFSITKSLTTP 168
++ + + G + IT S P
Sbjct: 239 CEIVRCLGKDGHNYRITGSSDQP 261
>gi|156372383|ref|XP_001629017.1| predicted protein [Nematostella vectensis]
gi|156216008|gb|EDO36954.1| predicted protein [Nematostella vectensis]
Length = 222
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 91/214 (42%), Gaps = 58/214 (27%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA---------- 57
Q FDY VV+DFE+TC +K+ EIIEFP+V+VS TG+I F+ +
Sbjct: 3 QPFDYLVVIDFESTCWKEKRRNSAPEIIEFPAVVVSTSTGEIVSEFRQFVSPTEHSRLSE 62
Query: 58 ----------------------LFLHDNW----QQHMGVT-----------PTNFA---- 76
L L W QQ G+ P + A
Sbjct: 63 FCTKLTGITQDQVDAGIPIGACLVLFSRWLKELQQLKGIRFMSDITRPNGRPIDQAKWAM 122
Query: 77 VVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGW 131
VTWSDWD + L++EC K P WI+L+ + K D + + + +
Sbjct: 123 SVTWSDWDIGICLKNECLRKRHLVPPELRSWIDLKATYKKFYSRKPDGLAGALKDLGIRF 182
Query: 132 HGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
GR H GLDD+ N A L +++ G S+T SL
Sbjct: 183 DGREHSGLDDARNTAALAWRMVRDGCVISVTSSL 216
>gi|281345321|gb|EFB20905.1| hypothetical protein PANDA_019321 [Ailuropoda melanoleuca]
Length = 311
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 89 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 148
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T + ++T WD L +CR
Sbjct: 149 INLTGITQDQVDRADTFPQVLKQVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLS 208
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 209 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 267
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 268 AVRMLQDGCELRINEKMHAGQLMSVSSSL 296
>gi|432117301|gb|ELK37688.1| 3'-5' exoribonuclease 1 [Myotis davidii]
Length = 349
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTGTLEIEDTFQQYVRPEVNTQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T + ++T WD L +CR
Sbjct: 187 INLTGITQDQVDRADTFPQVLKKVIDWMKLKELG-TKYKYCILTDGSWDMSKFLNIQCRL 245
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLK-EAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R + +G + + E + + + GR H GLDDS NIAR+
Sbjct: 246 SRLKYPPFAKKWINIRKSYGNFYKVPRGQTKLTIMLEKLGMDYDGRPHSGLDDSKNIARI 305
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 306 AVRMLQDGCELRINEKMHAGQLMSVSSSL 334
>gi|289739411|gb|ADD18453.1| 3' histone exonuclease 1 [Glossina morsitans morsitans]
Length = 226
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 81/186 (43%), Gaps = 54/186 (29%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQ----EIIEFPSVIVSGVTGQITVCFQIY--------- 56
Q +DY + VDFEATC + P+ EIIEFP+V+V+ TG+I F Y
Sbjct: 41 QTYDYVICVDFEATCWENQAPPRWRESEIIEFPAVLVNLKTGKIEAEFHKYIMPIESPKL 100
Query: 57 -----------------------ALFLHDNW------QQHMGVTPT-------NFAVVTW 80
AL + W +H+ + N A V+W
Sbjct: 101 SAFCTKLTGIAQKTVDNGIPLQTALMMFQEWLRKELRARHLSLPKMTKDNKLGNCAFVSW 160
Query: 81 SDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDVR--CNLKEA---VELGWHGRV 135
+DWD + L EC K + KP YFN+WI+LR + K N +A V L + GR
Sbjct: 161 TDWDFGICLHKECSRKRLKKPPYFNQWIDLRAIYKKWYKYQPLNFADALRHVGLSFQGRE 220
Query: 136 HCGLDD 141
H G+DD
Sbjct: 221 HSGIDD 226
>gi|345487306|ref|XP_003425664.1| PREDICTED: ERI1 exoribonuclease 3-like [Nasonia vitripennis]
Length = 225
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 93/210 (44%), Gaps = 44/210 (20%)
Query: 8 KLQDFDYFVVVDFEATCDKK-IPHPQEIIEFPSVIVSGVTGQITVCFQIYAL-----FLH 61
K++ +V+DFEATC K I PQEIIEFP ++VS Q+ F Y L
Sbjct: 19 KIKPLQNLLVLDFEATCVKDVILKPQEIIEFPCLVVSTEDWQVKDAFHEYVKPRINPKLS 78
Query: 62 DNWQQHMGVTPTNF-----------------------------AVVTWSDWDCQVMLESE 92
D + G+ A VT DWD +VML S+
Sbjct: 79 DFCTELTGIMQETLENEEHFPEVFSKFCSWIEDGNYFDEKDKSAFVTCGDWDLKVMLPSQ 138
Query: 93 CRFKNIPKPSYFNRWINLRVPF---SKGDVR--CNLKEAVELGWHGRVHCGLDDSMNIAR 147
C NI P Y WINL+ F +K R ++ + + + G+ HCG+DD N+ R
Sbjct: 139 CELDNINVPDYLKEWINLKSSFCLMTKYYPRSLADMLRHLNMKFQGKNHCGIDDVHNMTR 198
Query: 148 LLAVIMQR-GFKFSITKSLTTPQDITQDSV 176
++ + + +F+I T ++ T+DSV
Sbjct: 199 VIQKLADKYKAEFTIN---TKIEEETKDSV 225
>gi|291409160|ref|XP_002720873.1| PREDICTED: histone mRNA 3 end-specific exonuclease-like
[Oryctolagus cuniculus]
Length = 344
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 122 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEANTQLSDFC 181
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T + ++T WD L +C+
Sbjct: 182 INLTGITQDQVDKADTFPQVLRKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCQLS 241
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 242 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 300
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q +T S +
Sbjct: 301 AVRMLQDGCELRINEKMHAGQLMTVSSSL 329
>gi|307191666|gb|EFN75140.1| Prion protein-interacting protein [Harpegnathos saltator]
Length = 225
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 58/231 (25%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNW 64
P+ Q+F+Y +V+DFEATC+K P PQEIIE P ++S ++ F Y
Sbjct: 6 PKITQNFEYLLVMDFEATCEKHQPLKPQEIIELPCAVLSTRDWKLKDVFHEYI-----KP 60
Query: 65 QQHMGVTP-----------------------TNF----------------AVVTWSDWDC 85
+ H +TP +NF VT +WD
Sbjct: 61 RVHPILTPFCTELTGIIQDIVDNQPYFPDVFSNFCEWLTKGGYFDESNKSTFVTCGNWDL 120
Query: 86 QVMLESECRFKNIPKPSYFNRWINLRVPFSKGDVRC-----NLKEAVELGWHGRVHCGLD 140
+VML S+C+ I P F +WI+L+ FS+ + ++ + + GR+H G+D
Sbjct: 121 KVMLPSQCKLDGITLPDQFKQWIDLKHTFSEFSMYYPRSLPDMLTRLNIPLQGRLHSGID 180
Query: 141 DSMNIARLLAVIMQR-GFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQR 190
D N+ ++ + ++ +F IT S TT S++ + +VR++
Sbjct: 181 DVKNMVAIIQTLQEKYNVQFKITSSSTT-------SILNLKNYKGNMVRRK 224
>gi|326929461|ref|XP_003210882.1| PREDICTED: ERI1 exoribonuclease 2-like [Meleagris gallopavo]
Length = 716
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 85/202 (42%), Gaps = 56/202 (27%)
Query: 19 DFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY--------------ALFLHD 62
DFE+TC D + P EIIEFP+V+++ TG+I F + AL
Sbjct: 70 DFESTCWRDARQRRP-EIIEFPAVLLNAATGRIEAEFHAFVQPQEQPVLSEFCTALTGVT 128
Query: 63 NWQQHMGV---------------------------TPTNF-------AVVTWSDWDCQVM 88
Q GV TP+N A VTW+DWD V
Sbjct: 129 QKQVDEGVPLHICLSQFLKWLQKIQKEKKFLFISETPSNAIPETKLCAFVTWTDWDLGVC 188
Query: 89 LESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGWHGRVHCGLDDSM 143
L EC+ K + KP FN WI+L+ + K + + L + GR H GLDDS
Sbjct: 189 LHYECKRKQLRKPDIFNSWIDLKATYRAFYNRKPKGLSGALQDLGLAFVGREHSGLDDSR 248
Query: 144 NIARLLAVIMQRGFKFSITKSL 165
N ARL ++ G ITKSL
Sbjct: 249 NTARLAWRLICDGCVLKITKSL 270
>gi|62079013|ref|NP_001014165.1| 3'-5' exoribonuclease 1 [Rattus norvegicus]
gi|78098993|sp|Q5FVR4.1|ERI1_RAT RecName: Full=3'-5' exoribonuclease 1; AltName: Full=Histone mRNA
3'-exonuclease 1
gi|58476450|gb|AAH89828.1| Three prime histone mRNA exonuclease 1 [Rattus norvegicus]
gi|149057952|gb|EDM09195.1| three prime histone mRNA exonuclease 1 [Rattus norvegicus]
Length = 345
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYAL----------- 58
+DY ++DFEATC++ P EIIEFP V+++ + +I FQ Y
Sbjct: 123 YDYICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHSLEIEDTFQQYVRPEVNSQLSEFC 182
Query: 59 -----FLHD----------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
D W + + T + ++T WD L +C+
Sbjct: 183 IGLTGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLNIQCQLS 242
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ PS+ +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 243 RLKYPSFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 301
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + L Q ++ S +
Sbjct: 302 AVRMLQDGCELRINEKLHGGQLMSVSSSL 330
>gi|209154444|gb|ACI33454.1| Histone mRNA 3-exonuclease 1 [Salmo salar]
Length = 346
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 44/201 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYAL----------- 58
+DY VVDFEATC++ P EIIEFP V+++ T +I FQ Y
Sbjct: 124 YDYICVVDFEATCEQDNPADFTHEIIEFPMVLLNTHTLEIEDTFQEYVRPEVNTQLSEFC 183
Query: 59 ---------FLHDN------------WQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+ D W Q + T + ++T WD + ++CR
Sbjct: 184 VKLTGITQKMVDDADTFPDVLEQVVLWLQEKELGTKYKYTLLTDGSWDMSKFMNTQCRLN 243
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
++ P + +WIN++ VP ++ + L E + L + GR H GLDDS NIA +
Sbjct: 244 SLRYPQFAKKWINIKKLYGNFYKVPRTQTKLSSML-EKLGLKYEGRPHSGLDDSRNIAHI 302
Query: 149 LAVIMQRGFKFSITKSLTTPQ 169
++Q G + I + + Q
Sbjct: 303 AMRMLQDGCQLRINERMHEGQ 323
>gi|332023240|gb|EGI63496.1| Prion protein-interacting protein [Acromyrmex echinatior]
Length = 218
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 41/200 (20%)
Query: 9 LQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSG----------------------- 44
+Q ++Y +V+DFEATC++ + PQEIIE P +VS
Sbjct: 9 VQKYEYLLVMDFEATCERYTVLKPQEIIELPCAVVSTCDWKLKDMFHTYVKPRVHPTLTP 68
Query: 45 ----VTG--QITVCFQIYALFLHDN---WQQHMGV--TPTNFAVVTWSDWDCQVMLESEC 93
+TG Q TV Q Y + N W G P + VT +WD + ML S+C
Sbjct: 69 FCTELTGIMQETVDDQPYFANVFSNFCEWLTKGGYFDKPEKSSFVTCGNWDLKTMLPSQC 128
Query: 94 RFKNIPKPSYFNRWINLRVPF--SKGDVRCNLKEA---VELGWHGRVHCGLDDSMNIARL 148
I P F +W+ L+ F S G +LK+ + + GR+H G+DD N+ +
Sbjct: 129 ALDGITLPDQFKQWVELKYIFCESTGYYPKSLKDMLVRLNVPLKGRLHSGIDDVKNMVSI 188
Query: 149 LAVIMQR-GFKFSITKSLTT 167
+ V+ ++ +F IT SLTT
Sbjct: 189 ILVLKEKYNTQFKITSSLTT 208
>gi|84000359|ref|NP_001033281.1| 3'-5' exoribonuclease 1 [Bos taurus]
gi|81673840|gb|AAI09682.1| Three prime histone mRNA exonuclease 1 [Bos taurus]
gi|296472395|tpg|DAA14510.1| TPA: three prime histone mRNA exonuclease 1 [Bos taurus]
Length = 349
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 187 INLTGITQDQVDKADTFPQVLKKVIDWMKLKELG-TKYKYSILTDGSWDMSKFLNIQCQL 245
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIAR
Sbjct: 246 SRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIAR 304
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + + + + Q ++ S +
Sbjct: 305 IAVRMLQDGCELRVNEKMHAGQLMSVSSSL 334
>gi|440896880|gb|ELR48688.1| 3'-5' exoribonuclease 1 [Bos grunniens mutus]
Length = 349
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 187 INLTGITQDQVDKADTFPQVLKKVIDWMKLKELG-TKYKYSILTDGSWDMSKFLNIQCQL 245
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIAR
Sbjct: 246 SRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIAR 304
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + + + + Q ++ S +
Sbjct: 305 IAVRMLQDGCELRVNEKMHAGQLMSVSSSL 334
>gi|152941094|gb|ABS44984.1| histone mRNA 3' end-specific exonuclease [Bos taurus]
Length = 349
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 187 INLTGITQDQVDKADTFPQVLKKVIDWMKLKELG-TKYKYSILTDGSWDMSKFLNIQCQL 245
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIAR
Sbjct: 246 SRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIAR 304
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + + + + Q ++ S +
Sbjct: 305 IAVRMLQDGCELRVNEKMHAGQLMSVSSSL 334
>gi|395850252|ref|XP_003797709.1| PREDICTED: 3'-5' exoribonuclease 1 [Otolemur garnettii]
Length = 349
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T + ++T WD L +C+
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELG-TKYKYCILTDGSWDMSKFLHIQCQL 245
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P++ +WIN+R VP S+ + L E + + + GR H GLDDS NIAR
Sbjct: 246 SRLKYPAFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIAR 304
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + + + + Q ++ S +
Sbjct: 305 IAVRMLQDGCELRVNEKMHAGQLMSVSSSL 334
>gi|407860369|gb|EKG07376.1| hypothetical protein TCSYLVIO_001498 [Trypanosoma cruzi]
Length = 550
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 95/219 (43%), Gaps = 63/219 (28%)
Query: 6 PQKLQD-----------FDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVC 52
PQKLQ+ FD +VV+DFEATC++ ++ P EIIEFP V++ + +I
Sbjct: 50 PQKLQERQEDELPPSPFFDAYVVLDFEATCERNRRLEEP-EIIEFPMVLIDARSHRILTE 108
Query: 53 FQIYAL-----FLHDNWQQHMGVTPT-------------------------------NFA 76
FQ Y L D + G+ + ++
Sbjct: 109 FQRYVRPVVNPILSDFCTELTGIKQSVVDAAETFPLVFDAALEFLRGSGYGEAPPLRSYL 168
Query: 77 VVTWSDWDCQVMLESECRFKN-----IPKPSYFNRWINLRVPF-----SKGDVRCNLKE- 125
VT DWD + ML S+ R I P F RW NL+VP +K +++E
Sbjct: 169 FVTCGDWDLKTMLPSQLRTTEKTGTAIVAPPTFRRWCNLKVPMRAIVPTKARGMFDMREM 228
Query: 126 --AVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
AV L GR H G+DD NIA ++ +++RG + T
Sbjct: 229 LAAVGLPLKGRHHSGIDDCRNIASVVQELLRRGHVIAPT 267
>gi|426256336|ref|XP_004021796.1| PREDICTED: LOW QUALITY PROTEIN: 3'-5' exoribonuclease 1 [Ovis
aries]
Length = 337
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 115 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 174
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 175 INLTGITQDQVDKADTFPQVLKKVIDWMKLKELG-TKYKYSILTDGSWDMSKFLNIQCQL 233
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIAR
Sbjct: 234 SRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIAR 292
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + + + + Q ++ S +
Sbjct: 293 IAVRMLQDGCELRVNEKMHAGQLMSVSSSL 322
>gi|116666689|pdb|1ZBH|A Chain A, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
3'- Exonuclease
gi|116666690|pdb|1ZBH|B Chain B, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
3'- Exonuclease
gi|116666691|pdb|1ZBH|C Chain C, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
3'- Exonuclease
gi|116666692|pdb|1ZBH|D Chain D, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
3'- Exonuclease
Length = 299
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHDNW 64
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 77 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 136
Query: 65 QQHMGVTPT----------------------------NFAVVTWSDWDCQVMLESECRFK 96
G+T ++++T WD L +C+
Sbjct: 137 ISLTGITQDQVDRADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLS 196
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR +CGLDDS NIAR+
Sbjct: 197 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPNCGLDDSKNIARI 255
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 256 AVRMLQDGCELRINEKMHAGQLMSVSSSL 284
>gi|116666695|pdb|1ZBU|A Chain A, Crystal Structure Of Full-Length 3'-Exonuclease
gi|116666696|pdb|1ZBU|B Chain B, Crystal Structure Of Full-Length 3'-Exonuclease
gi|116666697|pdb|1ZBU|C Chain C, Crystal Structure Of Full-Length 3'-Exonuclease
gi|116666698|pdb|1ZBU|D Chain D, Crystal Structure Of Full-Length 3'-Exonuclease
Length = 349
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 84/195 (43%), Gaps = 44/195 (22%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHDNW 64
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 65 QQHMGVTPTN----------------------------FAVVTWSDWDCQVMLESECRFK 96
G+T ++++T WD L +C+
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDLXKLKELGTKYKYSLLTDGSWDXSKFLNIQCQLS 246
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + GR HCGLDDS NIAR+
Sbjct: 247 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIXL-EKLGXDYDGRPHCGLDDSKNIARI 305
Query: 149 LAVIMQRGFKFSITK 163
+Q G + I +
Sbjct: 306 AVRXLQDGCELRINE 320
>gi|444302267|pdb|4HXH|B Chain B, Structure Of Mrna Stem-loop, Human Stem-loop Binding
Protein And 3'hexo Ternary Complex
gi|444302270|pdb|4HXH|E Chain E, Structure Of Mrna Stem-loop, Human Stem-loop Binding
Protein And 3'hexo Ternary Complex
Length = 303
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 44/195 (22%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 73 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 132
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T ++++T WD L +C+
Sbjct: 133 ISLTGITQDQVDRADTFPQVLKKVIDWXKLKELGTKYKYSLLTDGSWDXSKFLNIQCQLS 192
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + GR HCGLDDS NIAR+
Sbjct: 193 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIXL-EKLGXDYDGRPHCGLDDSKNIARI 251
Query: 149 LAVIMQRGFKFSITK 163
+Q G + I +
Sbjct: 252 AVRXLQDGCELRINE 266
>gi|321477963|gb|EFX88921.1| hypothetical protein DAPPUDRAFT_311056 [Daphnia pulex]
Length = 349
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 40/195 (20%)
Query: 12 FDYFVVVDFEATCD--KKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
FD++V++D+EATC+ K QEIIEFP+V+++ G++ F+ Y
Sbjct: 113 FDFYVIIDYEATCELLKHSNFKQEIIEFPAVLLNCQKGEVEDEFRSYCRPVLNPLLTEFC 172
Query: 57 -------------ALFLHD------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
A H+ W Q + + +FA+VT WD L+++C
Sbjct: 173 TELTGITQDDVDKAPLFHEVLTSFEEWLQKKKLGSKYSFAIVTDGPWDIGYFLKNQCALS 232
Query: 97 NIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVEL---GWHGRVHCGLDDSMNIARLLAV 151
I P+Y WIN+R F+ + L ++L + GR H GLDD+ NIA ++
Sbjct: 233 KIEFPTYCKYWINIRKTFANFYNTGKMPLSTMIQLIGREFQGRAHSGLDDARNIAFIVQR 292
Query: 152 IMQRGFKFSITKSLT 166
+++ G + + L
Sbjct: 293 LVKDGARVVFNEKLA 307
>gi|256080351|ref|XP_002576445.1| 3'-5' exonuclease [Schistosoma mansoni]
gi|350645551|emb|CCD59791.1| 3'-5' exonuclease eri1-related [Schistosoma mansoni]
Length = 232
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 91/198 (45%), Gaps = 52/198 (26%)
Query: 10 QDFDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------ 56
+ +F ++DFE+TC + I P EIIEFP VI+ VTG + FQ +
Sbjct: 27 NNLRWFFILDFESTCFEDDIKKPAEIIEFPVVILDSVTGTLIDSFQSFVKPTENPELSVF 86
Query: 57 ------------------ALFLH--DNW----QQHMGVT----PTNFAVVTWSDWDCQVM 88
A+ L ++W ++++G + PT+ VTW+DWD
Sbjct: 87 CSNLTGIQQCDVENAPTLAVVLRKFEHWLRKAKENLGCSFKGQPTSAIFVTWTDWDISTC 146
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFSK--------GDVRCNLKEAVEL-GWH--GRVHC 137
L ECR K +P P I+L+ F + R LK+A+ L G H GR H
Sbjct: 147 LWDECRRKKLPLPGDMLNRIDLKAIFQQWLGSHKIGQKWRGGLKDALNLIGLHFEGRPHR 206
Query: 138 GLDDSMNIARLLAVIMQR 155
G+DD+ N +RLL ++ +
Sbjct: 207 GIDDARNTSRLLLHLLSK 224
>gi|417399372|gb|JAA46706.1| Putative 3'-5' exoribonuclease 1 [Desmodus rotundus]
Length = 349
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEMNAQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T + ++T WD L +C+
Sbjct: 187 INLTGITQDQVDRADTFPQVLKKVIDWMKLKELG-TKYKYCILTDGSWDMSKFLHIQCQL 245
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIAR
Sbjct: 246 SKLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIAR 304
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + + + + Q ++ S +
Sbjct: 305 IAVRMLQDGCELRVNEKMHAGQLMSVSSSL 334
>gi|348553710|ref|XP_003462669.1| PREDICTED: 3'-5' exoribonuclease 1-like [Cavia porcellus]
Length = 343
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHDNW 64
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 121 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 180
Query: 65 QQHMGVTPT----------------------------NFAVVTWSDWDCQVMLESECRFK 96
+ G+T + ++T WD L +C+
Sbjct: 181 IRLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCQLC 240
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ PS+ +WIN+R VP S+ + L E + + + GR H GLDDS NIA++
Sbjct: 241 RLKYPSFAKKWINVRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIAKI 299
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + + Q ++ S +
Sbjct: 300 AVRMLQDGCELRINEKMHSGQLMSVSSSL 328
>gi|322787625|gb|EFZ13665.1| hypothetical protein SINV_06869 [Solenopsis invicta]
Length = 254
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 95/200 (47%), Gaps = 41/200 (20%)
Query: 9 LQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSG----------------------- 44
+Q F+Y +V+DFEATC++ ++ PQEIIE P ++S
Sbjct: 35 VQKFEYLLVLDFEATCERYQVIKPQEIIELPCAVLSTHDWKLKDMFHSYVKPRVHPTLTP 94
Query: 45 ----VTG--QITVCFQIYALFLHD---NWQQHMGV--TPTNFAVVTWSDWDCQVMLESEC 93
+TG Q TV Q Y + + W G P + VT +WD + ML ++C
Sbjct: 95 FCTELTGIMQETVDGQPYFVDVFPIFCEWLTKRGYFDRPEKSSFVTCGNWDLKTMLPNQC 154
Query: 94 RFKNIPKPSYFNRWINLRVPF--SKGDVRCNLKEA---VELGWHGRVHCGLDDSMN-IAR 147
I P F +WI+L+ F S G +LK+ + + GR+H G+DD N I+
Sbjct: 155 DLDGIAPPDQFKQWIDLKHMFCESTGYYPKSLKDMLARLNMPLKGRLHSGIDDVKNMISI 214
Query: 148 LLAVIMQRGFKFSITKSLTT 167
+LA+ + +F IT SLTT
Sbjct: 215 MLALKEKYNTQFKITSSLTT 234
>gi|344240333|gb|EGV96436.1| 3'-5' exoribonuclease 1 [Cricetulus griseus]
Length = 279
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 90/207 (43%), Gaps = 44/207 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYAL-----FLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 57 YDYICIIDFEATCEEGNPAEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNSQLSDFC 116
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
W + + T + ++T WD L +C+
Sbjct: 117 VSLTGITQDQVDRADAFPQVLRKVIEWMKSKELGTKYKYCILTDGSWDMSKFLNIQCQLS 176
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 177 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 235
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDS 175
++Q G + I + + Q ++ S
Sbjct: 236 AVRMLQDGCELRINEKIHGGQLMSVSS 262
>gi|354471547|ref|XP_003498003.1| PREDICTED: 3'-5' exoribonuclease 1-like [Cricetulus griseus]
Length = 319
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 44/197 (22%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYAL-----FLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 97 YDYICIIDFEATCEEGNPAEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNSQLSDFC 156
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
W + + T + ++T WD L +C+
Sbjct: 157 VSLTGITQDQVDRADAFPQVLRKVIEWMKSKELGTKYKYCILTDGSWDMSKFLNIQCQLS 216
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 217 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 275
Query: 149 LAVIMQRGFKFSITKSL 165
++Q G + I + +
Sbjct: 276 AVRMLQDGCELRINEKI 292
>gi|355686536|gb|AER98088.1| exoribonuclease 3 [Mustela putorius furo]
Length = 176
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 40/173 (23%)
Query: 30 HPQEIIEFPSVIVSGVTGQITVCFQIYA-------------------------------- 57
HPQEIIEFP + ++G T +I F +Y
Sbjct: 1 HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQV 60
Query: 58 LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS 115
L D W G+ N VT DWD +VML +C++ +P YF +WINL+ +S
Sbjct: 61 LERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYS 120
Query: 116 ------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
+ ++ + + L GR H G+DD NIA ++ + +GF F T
Sbjct: 121 FAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYQGFIFKQT 173
>gi|55670498|pdb|1W0H|A Chain A, Crystallographic Structure Of The Nuclease Domain Of
3'hexo, A Deddh Family Member, Bound To Ramp
Length = 204
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 44/195 (22%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 68
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T ++++T WD L +C+
Sbjct: 69 ISLTGITQDQVDRADTFPQVLKKVIDWXKLKELGTKYKYSLLTDGSWDXSKFLNIQCQLS 128
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WIN+R VP S+ + L E + + GR HCGLDDS NIAR+
Sbjct: 129 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIXL-EKLGXDYDGRPHCGLDDSKNIARI 187
Query: 149 LAVIMQRGFKFSITK 163
+Q G + I +
Sbjct: 188 AVRXLQDGCELRINE 202
>gi|395541883|ref|XP_003772866.1| PREDICTED: 3'-5' exoribonuclease 1 [Sarcophilus harrisii]
Length = 469
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 46/198 (23%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY V+DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 247 YDYICVIDFEATCEEGNPPEFTHEIIEFPIVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 306
Query: 63 -------------------------NWQ--QHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 307 INLTGITQDMVDRADTFPQVLRNVVDWMRLKELG-TKYKYSILTDGSWDMSKFLNIQCQI 365
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ PS+ +WIN+R VP ++ + L E + + + GR H GLDDS NIAR
Sbjct: 366 SRLRYPSFAKKWINIRKSYGNFYKVPRNQTKLTIML-EKLGMSYDGRPHSGLDDSKNIAR 424
Query: 148 LLAVIMQRGFKFSITKSL 165
+ +++ G + + + +
Sbjct: 425 IAVRMLRDGCELRVNEKM 442
>gi|126330776|ref|XP_001373310.1| PREDICTED: 3'-5' exoribonuclease 1-like [Monodelphis domestica]
Length = 432
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 46/198 (23%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY V+DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 210 YDYICVIDFEATCEEGNPPEFTHEIIEFPIVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 269
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
W + +G T ++++T WD L +C+
Sbjct: 270 ISLTGITQDMVDRAATFPQVLRNVVEWMKLKELGTT-YKYSILTDGSWDMSKFLNIQCQI 328
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ PS+ +WIN+R VP ++ + L E + + + GR H GLDDS NIAR
Sbjct: 329 SRLRYPSFAKKWINIRKSYGNFYKVPRNQTKLTIML-EKLGMSYDGRPHSGLDDSKNIAR 387
Query: 148 LLAVIMQRGFKFSITKSL 165
+ +++ G + + + +
Sbjct: 388 IAVRMLRDGCELRVNEKM 405
>gi|321468566|gb|EFX79550.1| hypothetical protein DAPPUDRAFT_4269 [Daphnia pulex]
Length = 199
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 48/187 (25%)
Query: 12 FDYFVVVDFEATCD--KKIPHPQEIIEFPSVIVSGVTGQI-----TVCFQIYALFLHDNW 64
FDYFV++DFE TC K QEIIEFP+++++G G I + C + L +
Sbjct: 2 FDYFVIIDFEGTCGFLKNPCGIQEIIEFPAILLNGHNGSIEDEFHSFCQPVLNPSLTNFC 61
Query: 65 QQHMGVTPT-----------------------------NFAVVTWSDWDCQVMLESECRF 95
++ G+T +FAVVT D + L+ +CR
Sbjct: 62 KKLTGITQDAVDKAPLFKDVFVSFEEWLKKNKVIGSYYSFAVVTDDPNDIRQFLQKQCRI 121
Query: 96 KNIPKPSYFNRWINLRVPFS----KGDVRC----NLKEAVELGWHGRVHCGLDDSMNIA- 146
I P+Y WIN+++ F+ G+++C N+ + + GR H G+DD+ NIA
Sbjct: 122 SEIDFPTYCQNWINIKIIFAHFYKNGNMQCLSLKNMIRDIGCEFQGRAHSGIDDARNIAS 181
Query: 147 ---RLLA 150
RLLA
Sbjct: 182 IVQRLLA 188
>gi|426254403|ref|XP_004020868.1| PREDICTED: ERI1 exoribonuclease 2 [Ovis aries]
Length = 689
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 76 AVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELG 130
A VTWSDWD V LE EC+ K + KP + N WI+LRV + K + V +
Sbjct: 148 AFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYRRKPKGLSGALQEVGMQ 207
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQR 190
+ GR H GLDDS N A L +++ G IT+SL ++ T N + + +
Sbjct: 208 FSGREHFGLDDSRNTALLAWKMIRDGCLMKITRSLNKVSTKRNPNIFTRNLNMEQVEETS 267
Query: 191 KCTFQHTSRDPA 202
CT +++ DP+
Sbjct: 268 ACT--NSTHDPS 277
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
Q FDY +++DFE+TC D K QEIIEFP+V+++ TG+I F Y
Sbjct: 32 QLFDYLIIIDFESTCWNDGKHHRSQEIIEFPAVLLNTSTGEIESEFHAY 80
>gi|66472468|ref|NP_001018476.1| ERI1 exoribonuclease 2 [Danio rerio]
gi|82228769|sp|Q502M8.1|ERI2_DANRE RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
domain-containing protein 1
gi|63100865|gb|AAH95637.1| Zgc:111991 [Danio rerio]
Length = 555
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 85/208 (40%), Gaps = 57/208 (27%)
Query: 10 QDFDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------ 56
Q F + +++DFE+TC +K QEIIEFP+V++S +G + F Y
Sbjct: 30 QRFSFLIIIDFESTCWREKSSSGQEIIEFPAVLLSVCSGAVESEFHSYVQPQERPVLSAF 89
Query: 57 --------------ALFLH------DNWQQHM-------------GVTPTNF--AVVTWS 81
A LH W + + G P+ A VTWS
Sbjct: 90 CTELTGITQDQVDSAPPLHVVLSRFSRWLRSLQEERGVVFLTDSSGAAPSAQLCAFVTWS 149
Query: 82 DWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-------KGDVRCNLKEAVELGWHGR 134
DWD V L EC+ K + P WI+LR + KG L +E + GR
Sbjct: 150 DWDLGVCLLYECKRKQLSVPEALKNWIDLRATYKLFYNRKPKGLRGALLDLGIE--FTGR 207
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSIT 162
H GL D+ N A L +M G + SIT
Sbjct: 208 EHSGLVDARNTALLAQRMMTDGCQLSIT 235
>gi|340720676|ref|XP_003398758.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 6-like
[Bombus terrestris]
Length = 623
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 46/211 (21%)
Query: 10 QDFDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVCFQIY----------- 56
Q F+Y +V+DFE TC K KI PQEIIEFP VS + ++ F Y
Sbjct: 411 QSFNYLLVLDFECTCKKYEKID-PQEIIEFPCAAVSTTSWEVENVFHEYIKPKYHPQLTP 469
Query: 57 ---------------ALFLHD------NW-QQHMGVTP-TNFAVVTWSDWDCQVMLESEC 93
L+ + NW ++H N A VT DWD + ML S+C
Sbjct: 470 FCTELTGIIQDLVDNQLYFPEVFGTFCNWLEEHKYFKDGNNSAFVTCGDWDLKFMLPSQC 529
Query: 94 RFKNIPKPSYFNRWINLRVPFSKGDVR-----CNLKEAVELGWHGRVHCGLDDSMNIARL 148
+NI P F +WINL+ F ++ + L G++H G+ D N+ ++
Sbjct: 530 ELENISLPKQFMKWINLKGSFCDATDHYPRNLTDMLSHLNLPLVGKLHSGISDVKNMVQI 589
Query: 149 L-AVIMQRGFKFSITKSLTTPQDITQDSVMT 178
+ A+ Q +F I D+ +D ++T
Sbjct: 590 IQALQSQHNVQFKIN---NVHHDVLRDMLLT 617
>gi|167522769|ref|XP_001745722.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776071|gb|EDQ89693.1| predicted protein [Monosiga brevicollis MX1]
Length = 320
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 55/208 (26%)
Query: 10 QDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------ 56
Q F+ V+DFEATC++ + P P EIIE P++++ +G++ FQ Y
Sbjct: 96 QPFELVCVMDFEATCEEERSPFPHEIIEIPAILLDAKSGELLDTFQTYVRPKLNPQLSKF 155
Query: 57 --------------ALFLHDNWQQH---MGVTPTNFA---------VVTWSD--WDCQVM 88
A + WQ +G F V+ SD WD +
Sbjct: 156 CTNLTGITQDQVDAAKLFPEAWQDFEDFLGKAVQKFKASHDVDDVRVLCASDGPWDFRDF 215
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFSK-------GDVRCN-------LKEAVELGWHGR 134
L +C+ + P+ +W+++R +K G R + +AV L + GR
Sbjct: 216 LAFQCQLSQMDYPAVCQQWMDVRKRLTKHFKLKWAGPERAAYATGLDFMLQAVGLTFEGR 275
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSIT 162
H G+DDS NIARL+ V++ G + S+T
Sbjct: 276 PHSGIDDSRNIARLVQVLIDEGAQLSVT 303
>gi|301603560|ref|XP_002931486.1| PREDICTED: ERI1 exoribonuclease 3 [Xenopus (Silurana) tropicalis]
Length = 338
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 63/136 (46%), Gaps = 34/136 (25%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F Y
Sbjct: 125 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHPQLTPFC 184
Query: 57 -------------------ALFLHDNWQQHMG-VTPTNFAV-VTWSDWDCQVMLESECRF 95
L D W G + P+ ++ VT DWD ++ML +C +
Sbjct: 185 TELTGIIQDMVDGQPTLSQVLERVDEWMAKEGLLDPSVKSIFVTCGDWDLKLMLPGQCEY 244
Query: 96 KNIPKPSYFNRWINLR 111
+ YF +WINL+
Sbjct: 245 LGLQVADYFKQWINLK 260
>gi|194767427|ref|XP_001965817.1| GF20552 [Drosophila ananassae]
gi|190618417|gb|EDV33941.1| GF20552 [Drosophila ananassae]
Length = 159
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 74 NFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-SKGDVR-CNLKEA---VE 128
N A VTW+DWD + L +C K + K +YFN+WI++R + S R CN +A V
Sbjct: 51 NCAFVTWTDWDFGICLAKKCTRKRMCKAAYFNQWIDVRAIYRSWYKYRPCNFSDALSHVG 110
Query: 129 LGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
L + R H G+DD+ N+ L+ ++ G FSITK LT Q + + ++
Sbjct: 111 LAFERRAHSGIDDAKNLGALMCTMVSDGALFSITKDLTPYQQLNANCIL 159
>gi|321478169|gb|EFX89127.1| hypothetical protein DAPPUDRAFT_41461 [Daphnia pulex]
Length = 231
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 52/209 (24%)
Query: 9 LQDFDYFVVVDFEATCDKK----IPHPQEIIEFPSVIVSGVTGQITVCFQIY-------- 56
++ FDY+VV+D+EATCD+ + QEIIEFP+V+++ TG++ FQ Y
Sbjct: 23 IEMFDYYVVIDYEATCDENHNNFDKNNQEIIEFPAVLLNCHTGKVEAEFQSYCRPVINPL 82
Query: 57 ------------------ALFLHD------NWQQHMGV-TPTNFAVVTWSDWDCQVMLES 91
A HD W Q + + +FA++T D L+
Sbjct: 83 LTKYCIKLTGITQNIVDKAPSFHDVLASFEKWLQKKKLGSEYSFAILTDGSKDVGHFLKR 142
Query: 92 ECRFKNIPKPSYFNRWINLRVPFSK--------------GDVRCNLK-EAVELGWHGRVH 136
+C I P Y WIN+R F+ D N+ + + + G+ H
Sbjct: 143 QCVLSQIDIPEYCKYWINIRKSFTNFYQTNDLQYFARLANDTVLNIMIKEIGCKFQGKPH 202
Query: 137 CGLDDSMNIARLLAVIMQRGFKFSITKSL 165
GLDD+ NIA + ++Q G + L
Sbjct: 203 SGLDDARNIAYVAQCLLQDGASLVFNEKL 231
>gi|260805280|ref|XP_002597515.1| hypothetical protein BRAFLDRAFT_219821 [Branchiostoma floridae]
gi|229282780|gb|EEN53527.1| hypothetical protein BRAFLDRAFT_219821 [Branchiostoma floridae]
Length = 279
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 42/202 (20%)
Query: 8 KLQDFDYFVVVDFEATCDKKIP--HPQEIIEFPSVIV----------------------- 42
K + +D+ +V+DFEATC ++ P EIIEFP ++V
Sbjct: 61 KSEHYDFLLVIDFEATCMEENPPDFQHEIIEFPILLVNTETLIVEDQFHSYCRPTINPKL 120
Query: 43 -------SGVTGQITVCFQIYALFLHD--NW--QQHMGVTPTNFAVVTWSDWDCQVMLES 91
+G+T ++ + L D +W + G+ + FAV T WD L
Sbjct: 121 TPFCTKLTGITQKMVDKAPEFPQVLEDVLDWMSSKGYGMGHSRFAVATDGPWDMCRFLYQ 180
Query: 92 ECRFKNIPKPSYFNRWINLRVPFSK------GDVRCNLKEAVELGWHGRVHCGLDDSMNI 145
+C + IP P F RWIN++ F+ G + ++ L + G+ H G DD++NI
Sbjct: 181 QCLYCGIPYPRPFRRWINVKKHFANFYQTRGGTKLQEMLASLGLQFEGKPHSGRDDAVNI 240
Query: 146 ARLLAVIMQRGFKFSITKSLTT 167
AR+ ++Q G + + + L
Sbjct: 241 ARIAGRLIQDGCELRVNECLNN 262
>gi|388492040|gb|AFK34086.1| unknown [Lotus japonicus]
Length = 99
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 153 MQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQRKCTFQHTSRDPAEVEEFRYCFC 212
M +GFKFSIT S+ T D + W + + + ++ + V+ CFC
Sbjct: 1 MHKGFKFSITNSIMWQ---TSDRSLMWKQSPEQMSVFPHYPYKAKDMNTPIVQYHPCCFC 57
Query: 213 GAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHSATA 254
G KS + +IRKPGPK G+ FFGCGN T +GA C+YF +A
Sbjct: 58 GVKSSRGMIRKPGPKHGNLFFGCGNWTATRGARCHYFEWISA 99
>gi|241896984|ref|NP_001155946.1| exoribonuclease 1 [Acyrthosiphon pisum]
Length = 340
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 80/191 (41%), Gaps = 46/191 (24%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
F YFVV+D EATC + P + EIIEFP+V+V +I FQ +
Sbjct: 92 FPYFVVIDIEATCTENNPADYKFEIIEFPAVLVDAKKRKIIDHFQAFVKPSINPKLSEFC 151
Query: 58 --------------------LFLHDNW-QQHMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
L W ++H F++VT +D L +C
Sbjct: 152 IKLTGITQDQIDNADSFEVCLTRFTKWLEEHELGIKHKFSIVTDGPFDMARFLYGQCLMS 211
Query: 97 NIPKPSYFNRWINLRVPFS--------KGDVRCNLKEA---VELGWHGRVHCGLDDSMNI 145
IP P + +WIN+R F K V CNL +++ + G H GLDDS NI
Sbjct: 212 EIPYPKFATKWINIRKVFKAFYFTKQVKYSVPCNLNAMLTFLDMEFEGNPHSGLDDSFNI 271
Query: 146 ARLLAVIMQRG 156
+R+ +++ G
Sbjct: 272 SRICIRLLEDG 282
>gi|198414320|ref|XP_002130965.1| PREDICTED: similar to three prime histone mRNA exonuclease 1 [Ciona
intestinalis]
Length = 322
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 40/205 (19%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIY---- 56
P + +Q + Y VV+D+EATC+++ P EIIEFP+V++ + + F Y
Sbjct: 78 PSYVEGMQHYPYLVVLDYEATCEQQNPQDYLHEIIEFPAVLIDTTSTERVDVFHSYCKPA 137
Query: 57 ---------------------------ALFLH-DNW-QQHMGVTPTNFAVVTWSDWDCQV 87
+F + + W ++H P A VT WD
Sbjct: 138 LNPQLSEFCTSLTGIQQSDVDSAPDFTTVFNNFETWMKKHDLFAPRKCAFVTDGPWDFSR 197
Query: 88 MLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGRVHCGLDDS 142
L +C I P + +WINL+ + K ++ + L + GR HCG+DD+
Sbjct: 198 FLNIQCCLSEIKYPRWAKKWINLKKVYGNFYKLKKPKMMDMLSNIGLEFEGRHHCGMDDA 257
Query: 143 MNIARLLAVIMQRGFKFSITKSLTT 167
N++R++ ++ G F + L +
Sbjct: 258 TNLSRIVQRMLDDGAIFQFNERLNS 282
>gi|256080349|ref|XP_002576444.1| 3'-5' exonuclease [Schistosoma mansoni]
gi|350645552|emb|CCD59792.1| 3'-5' exonuclease eri1-related [Schistosoma mansoni]
Length = 224
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 56/201 (27%)
Query: 11 DFDYF----VVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY--------- 56
DF+ F + +FE+TC + I P EIIEFP VI+ VTG + FQ +
Sbjct: 16 DFNTFAQNSLTNNFESTCFEDDIKKPAEIIEFPVVILDSVTGTLIDSFQSFVKPTENPEL 75
Query: 57 ---------------------ALFLH--DNW----QQHMGVT----PTNFAVVTWSDWDC 85
A+ L ++W ++++G + PT+ VTW+DWD
Sbjct: 76 SVFCSNLTGIQQCDVENAPTLAVVLRKFEHWLRKAKENLGCSFKGQPTSAIFVTWTDWDI 135
Query: 86 QVMLESECRFKNIPKPSYFNRWINLRVPFSK--------GDVRCNLKEAVEL-GWH--GR 134
L ECR K +P P I+L+ F + R LK+A+ L G H GR
Sbjct: 136 STCLWDECRRKKLPLPGDMLNRIDLKAIFQQWLGSHKIGQKWRGGLKDALNLIGLHFEGR 195
Query: 135 VHCGLDDSMNIARLLAVIMQR 155
H G+DD+ N +RLL ++ +
Sbjct: 196 PHRGIDDARNTSRLLLHLLSK 216
>gi|118387765|ref|XP_001026985.1| exonuclease family protein [Tetrahymena thermophila]
gi|89308755|gb|EAS06743.1| exonuclease family protein [Tetrahymena thermophila SB210]
Length = 251
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 84/194 (43%), Gaps = 48/194 (24%)
Query: 11 DFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQIT-VCFQIY----------- 56
DFD+ +++DFEATC D+K+ + QEIIEFP VI+ I F Y
Sbjct: 17 DFDFLLILDFEATCSNDEKL-NVQEIIEFPIVILDLKKNVILPEYFHTYVKPTYHPILTK 75
Query: 57 ---------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
A+ D + MG+ FA V D+D L E +F
Sbjct: 76 FCTELTHITQEQVDNGVILESAIQQADEFLNKMGIIDKKFAFVCCGDFDLGQCLRLEAKF 135
Query: 96 KNIPKPSYFNRWINLRVPFSK-----GDVRCN-------LKEAVELGWHGRVHCGLDDSM 143
K I P YF ++IN++ F K ++ N + +A+ L G H GLDDS
Sbjct: 136 KKINYPQYFKQYINIKKQFPKEWYTESIIKWNKPPGMVAMLKAINLELQGTHHSGLDDSK 195
Query: 144 NIARLLAVIMQRGF 157
NIAR+ +++
Sbjct: 196 NIARIAQFMVEHNI 209
>gi|440906215|gb|ELR56504.1| ERI1 exoribonuclease 2, partial [Bos grunniens mutus]
Length = 682
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 76 AVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELG 130
A VTWSDWD V LE EC+ K + KP + N WI+LRV + K + V +
Sbjct: 141 AFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYRRKPKGLSGALQEVGMQ 200
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQR 190
+ GR H GLDDS N A L +++ G IT+SL ++ T N + +
Sbjct: 201 FLGREHFGLDDSRNTALLAWKMIRDGCLMKITRSLNKVSTKRIPNIFTRNLNMDQVEETS 260
Query: 191 KCTFQHTSRDPA 202
CT + + DP+
Sbjct: 261 TCT--NNTHDPS 270
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA 57
Q FDY +++DFE+TC D K QEIIEFP+V+++ TG+I F Y
Sbjct: 25 QLFDYLIIIDFESTCWNDGKRHRSQEIIEFPAVLLNTSTGEIESEFHAYV 74
>gi|329663381|ref|NP_001192506.1| ERI1 exoribonuclease 2 [Bos taurus]
gi|296473339|tpg|DAA15454.1| TPA: ERI1 exoribonuclease family member 2 [Bos taurus]
Length = 689
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 76 AVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELG 130
A VTWSDWD V LE EC+ K + KP + N WI+LRV + K + V +
Sbjct: 148 AFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYRRKPKGLSGALQEVGMQ 207
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQR 190
+ GR H GLDDS N A L +++ G IT+SL ++ T N + +
Sbjct: 208 FLGREHFGLDDSRNTALLAWKMIRDGCLMKITRSLNKVSTKRIPNIFTRNLNMDQVEETS 267
Query: 191 KCTFQHTSRDPA 202
CT + + DP+
Sbjct: 268 TCT--NNTHDPS 277
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
Q FDY +++DFE+TC D K QEIIEFP+V+++ TG+I F Y
Sbjct: 32 QLFDYLIIIDFESTCWNDGKRHRSQEIIEFPAVLLNTSTGEIESEFHAY 80
>gi|395835560|ref|XP_003790745.1| PREDICTED: ERI1 exoribonuclease 2 isoform 1 [Otolemur garnettii]
Length = 592
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 16/133 (12%)
Query: 49 ITVCFQIYALFLHDNWQQH-----MGVTPTNF------AVVTWSDWDCQVMLESECRFKN 97
+ +C + ++H+ QQ GV+ + A VTWSDWD V LE EC+ K
Sbjct: 17 LKICLSQFCKWIHNIEQQKKIIFAAGVSEPSTSEIKLCAFVTWSDWDLGVCLEYECKRKQ 76
Query: 98 IPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVI 152
+ KP + N WI+LR + K + V + + GR H GLDDS N A L +
Sbjct: 77 LLKPVFLNSWIDLRAIYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKM 136
Query: 153 MQRGFKFSITKSL 165
++ G + IT+SL
Sbjct: 137 IRDGCQMKITRSL 149
>gi|395835562|ref|XP_003790746.1| PREDICTED: ERI1 exoribonuclease 2 isoform 2 [Otolemur garnettii]
Length = 657
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 16/133 (12%)
Query: 49 ITVCFQIYALFLHDNWQQH-----MGVTPTNF------AVVTWSDWDCQVMLESECRFKN 97
+ +C + ++H+ QQ GV+ + A VTWSDWD V LE EC+ K
Sbjct: 82 LKICLSQFCKWIHNIEQQKKIIFAAGVSEPSTSEIKLCAFVTWSDWDLGVCLEYECKRKQ 141
Query: 98 IPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVI 152
+ KP + N WI+LR + K + V + + GR H GLDDS N A L +
Sbjct: 142 LLKPVFLNSWIDLRAIYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKM 201
Query: 153 MQRGFKFSITKSL 165
++ G + IT+SL
Sbjct: 202 IRDGCQMKITRSL 214
>gi|410985044|ref|XP_003998835.1| PREDICTED: ERI1 exoribonuclease 2 [Felis catus]
Length = 685
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 76 AVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELG 130
A VTWSDWD V LE EC+ K + KP + N WI+LRV + K + V +
Sbjct: 148 AFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYRRKPKGLSGALQEVGIE 207
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
+ GR H GLDDS N A L +++ G IT+SL
Sbjct: 208 FLGREHSGLDDSRNTALLAWKMIRDGCLMKITRSL 242
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
Q FDY +V+DFE+TC D K QEIIEFP+V++S TG+I F Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKRHQSQEIIEFPAVLLSTSTGEIESEFHTY 80
>gi|350412671|ref|XP_003489724.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 6-like
[Bombus impatiens]
Length = 618
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 50/191 (26%)
Query: 10 QDFDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q F+Y +V+DFE TC K KI PQEIIEFP VS + ++ F Y
Sbjct: 411 QPFNYLLVLDFECTCKKYEKID-PQEIIEFPCAAVSTTSWEVENVFHEYIKPKYHPQLTP 469
Query: 59 -------FLHD----------------NW-QQHMGVTPTN-FAVVTWSDWDCQVMLESEC 93
+ D NW ++H N A VT DWD + ML S+C
Sbjct: 470 FCTELTGIIQDLVDNQPYFPEVFGTFCNWLEEHKYFKDGNDSAFVTCGDWDLKFMLPSQC 529
Query: 94 RFKNIPKPSYFNRWINLR---------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMN 144
+NI P F +WINL+ P + D+ +LK L G++H G+ D N
Sbjct: 530 ELENISLPKQFMKWINLKGSFCDAVDHYPRNLTDMLLHLK----LPLIGKLHSGMSDVEN 585
Query: 145 IARLLAVIMQR 155
+ +++ + R
Sbjct: 586 MVQIIQALQSR 596
>gi|345305381|ref|XP_001508438.2| PREDICTED: ERI1 exoribonuclease 2 [Ornithorhynchus anatinus]
Length = 757
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 76 AVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELG 130
A VTWSDWD V LE EC+ K + KP N WI+LR + K + + L
Sbjct: 149 AFVTWSDWDLGVCLEYECKRKQLRKPEILNSWIDLRATYKLFYMRKPKGLSGALQDLGLK 208
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQ 169
+ G+ H GLDDS N A L ++ G ITKSL T Q
Sbjct: 209 FSGQEHSGLDDSRNTAHLAWRMIGDGCIMKITKSLNTVQ 247
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
Q FDY +V+DFE+TC D K + QEIIEFP+V+++ TG+I FQ Y
Sbjct: 33 QLFDYLIVIDFESTCWNDGKHHYSQEIIEFPAVLLNTSTGEIESEFQCY 81
>gi|158258625|dbj|BAF85283.1| unnamed protein product [Homo sapiens]
Length = 598
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 49 ITVCFQIYALFLHDNWQQHMGVTPTNF-----------AVVTWSDWDCQVMLESECRFKN 97
+ +C + ++H QQ + T A VTWSDWD V LE EC+ K
Sbjct: 17 LKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQ 76
Query: 98 IPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVI 152
+ KP + N WI+LR + K + V + + GR H GLDDS N A L +
Sbjct: 77 LLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKM 136
Query: 153 MQRGFKFSITKSL 165
++ G IT+SL
Sbjct: 137 IRDGCVMKITRSL 149
>gi|312092765|ref|XP_003147452.1| exonuclease [Loa loa]
Length = 401
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 56/234 (23%)
Query: 12 FDYFVVVDFEATCDKKI-PHPQEIIEFPSVIVSGVTGQITVCFQIYALFLHD-------- 62
+DYFVV+DFE TC+ + + EIIEFP+++V +I F Y L +
Sbjct: 147 YDYFVVIDFECTCEADLYDYNHEIIEFPAILVDVRKKEIVDVFHSYVRPLANPQLSEFCS 206
Query: 63 ------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESEC-RF 95
W Q H+G +A VT WD + +C +
Sbjct: 207 AFTGITQEMVDKALPFIDVLDSFRAWMQLHHLGQKEVRYAFVTDGPWDIAKFFQMQCIQS 266
Query: 96 KNIPKPSYFNRWINLRVPFSKG------DVRCNLKE---AVELGWHGRVHCGLDDSMNIA 146
K P P F ++N+R F+ + NL ++ + + GR H GLDDS NIA
Sbjct: 267 KLNPIPHDFRFYVNVRRSFANKYCKKHPTQKINLSRMLTSLNMKFEGREHSGLDDSKNIA 326
Query: 147 RLLAVIMQRGFKFSITKSLTTPQDITQDSVM-----------TWNRHHQFLVRQ 189
+++ ++ + + + L +D + ++ TW + ++V+Q
Sbjct: 327 KIVIRMLGDKSELRVNEKLVRIKDGEKAKLLPDMNKEDRDRQTWRNNLPYMVQQ 380
>gi|393911376|gb|EFO16618.2| exonuclease [Loa loa]
Length = 388
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 56/234 (23%)
Query: 12 FDYFVVVDFEATCDKKI-PHPQEIIEFPSVIVSGVTGQITVCFQIYALFLHD-------- 62
+DYFVV+DFE TC+ + + EIIEFP+++V +I F Y L +
Sbjct: 134 YDYFVVIDFECTCEADLYDYNHEIIEFPAILVDVRKKEIVDVFHSYVRPLANPQLSEFCS 193
Query: 63 ------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESEC-RF 95
W Q H+G +A VT WD + +C +
Sbjct: 194 AFTGITQEMVDKALPFIDVLDSFRAWMQLHHLGQKEVRYAFVTDGPWDIAKFFQMQCIQS 253
Query: 96 KNIPKPSYFNRWINLRVPFSKG------DVRCNLKE---AVELGWHGRVHCGLDDSMNIA 146
K P P F ++N+R F+ + NL ++ + + GR H GLDDS NIA
Sbjct: 254 KLNPIPHDFRFYVNVRRSFANKYCKKHPTQKINLSRMLTSLNMKFEGREHSGLDDSKNIA 313
Query: 147 RLLAVIMQRGFKFSITKSLTTPQDITQDSVM-----------TWNRHHQFLVRQ 189
+++ ++ + + + L +D + ++ TW + ++V+Q
Sbjct: 314 KIVIRMLGDKSELRVNEKLVRIKDGEKAKLLPDMNKEDRDRQTWRNNLPYMVQQ 367
>gi|256083202|ref|XP_002577838.1| prion interactor pint1 [Schistosoma mansoni]
gi|360044777|emb|CCD82325.1| putative prion interactor pint1 [Schistosoma mansoni]
Length = 191
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 83/200 (41%), Gaps = 60/200 (30%)
Query: 16 VVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCF-------------------- 53
+V+DFEATC D+K+P EIIEFP ++++ T Q F
Sbjct: 1 MVLDFEATCEQDRKLP-VAEIIEFPVLMINASTLQTEAVFHRYVRPTINPVLSDFCTELT 59
Query: 54 -----------------QIYALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
+I+ FL N ++ P FA VT D D + ML +C+
Sbjct: 60 GIIQSMVDDQPDLPTVLKIFNSFLDAN---NLNTIPYQFAFVTCGDCDLKTMLPRQCKAL 116
Query: 97 NIPKPSYFNRWINLRVPFSKGDVRCNLKEAVELGWH-----------GRVHCGLDDSMNI 145
I P YF +WINL+ V CN+ G GR H G+DD NI
Sbjct: 117 GIDVPDYFKQWINLK------QVYCNVMGQFPFGMMSMLSGLNIKHTGRHHSGIDDCHNI 170
Query: 146 ARLLAVIMQRGFKFSITKSL 165
A +L +++ G +T ++
Sbjct: 171 ANILRELIRCGATLDVTGNI 190
>gi|426204660|gb|AFY13248.1| ERI1 exoribonuclease 3-like protein, partial [Schistocerca
gregaria]
Length = 203
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 35/138 (25%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
+ Y+V+VDFEATC++ P +P EIIEFP+V+V+ +I CFQ Y
Sbjct: 52 YPYYVIVDFEATCEEVNPPDYPHEIIEFPAVLVNSEKQEIEDCFQSYCRPTVKSTLSKFC 111
Query: 57 -------------------ALFLHDNWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
L + W G+ T +A+VT WD L +C+
Sbjct: 112 TELTGITQEQVDKAETFPEVLSRFEAWLVEHGLGTKYKYAIVTDGPWDMGRFLYGQCQLS 171
Query: 97 NIPKPSYFNRWINLRVPF 114
IP PS+ +W N+R F
Sbjct: 172 GIPYPSFGKKWXNIRKTF 189
>gi|338712792|ref|XP_003362770.1| PREDICTED: ERI1 exoribonuclease 2 [Equus caballus]
Length = 689
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 76 AVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELG 130
A VTWSDWD V LE EC+ K + KP + N WI+LRV + K + V L
Sbjct: 148 AFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYKRKPKGLSGALQEVGLE 207
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
+ GR H GLDDS N A L +++ G IT+ L
Sbjct: 208 FLGREHSGLDDSRNTALLAWKMIRDGCFMKITRPL 242
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
Q FDY +V+DFE+TC D K QEIIEFP+V+++ TG+I F Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHQSQEIIEFPAVLLNTSTGEIESEFHAY 80
>gi|390347745|ref|XP_796324.3| PREDICTED: 3'-5' exoribonuclease 1-like [Strongylocentrotus
purpuratus]
Length = 419
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 40/195 (20%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
FDY V+D EATC + P + EIIEFP V+++ T QI F +
Sbjct: 223 FDYLCVIDVEATCQEINPVDYIHEIIEFPIVLLNTKTLQIEDTFDAFCKPVINPQLSKFC 282
Query: 57 -------------------ALFLHDNWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
L + W + G+ + +FA+ T D + L+ +C
Sbjct: 283 SQLTNISQKMVDKADEFPTVLEKAERWMRQKGLGSKHSFAIATDCSLDMDLYLKLQCLVS 342
Query: 97 NIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAV 151
IP P Y W+N+ F+ R L+ ++ L + G+ H G+DD+ NIAR+
Sbjct: 343 EIPYPQYAKEWVNISKVFANLYKTKRLPLRAMLDSTGLAFIGQPHRGIDDARNIARVALQ 402
Query: 152 IMQRGFKFSITKSLT 166
+++ G + + LT
Sbjct: 403 LIEDGAEMKYNERLT 417
>gi|345802232|ref|XP_851106.2| PREDICTED: ERI1 exoribonuclease 2 [Canis lupus familiaris]
Length = 679
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 76 AVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELG 130
A VTWSDWD V LE EC+ K + KP + N WI+LRV + K + V +
Sbjct: 148 AFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYRRKPKGLSGALQEVGIE 207
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
+ G+ H GLDDS N A L +++ G IT+SL
Sbjct: 208 FLGQEHSGLDDSRNTAMLAWKMIRDGCLMKITRSL 242
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
Q FDY +V+DFE+TC D K QEIIEFP+V+++ TG+I F Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHQSQEIIEFPAVLLNTSTGEIESEFHAY 80
>gi|401422814|ref|XP_003875894.1| putative phosphotransferase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492134|emb|CBZ27408.1| putative phosphotransferase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 584
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 85/213 (39%), Gaps = 57/213 (26%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQ------------- 54
Q FD +VV+DFEATC D++I E+IEFP V+V T FQ
Sbjct: 53 QPFDAYVVLDFEATCEADRRIAD-AEVIEFPMVLVDARTATPVAEFQRYVRPVKNPVLSR 111
Query: 55 ---------------------IYALFLHDNWQQHMGVTP--TNFAVVTWSDWDCQVMLES 91
+Y L + +G P ++ VVT DWD + ML +
Sbjct: 112 FCTELTGITQDMVRGRDPFPMVYCEALQFLAEAGLGDAPPMRSYCVVTCGDWDLKTMLPA 171
Query: 92 ECRFKNIP-KPSYFNRWINLRVPFSKGDVRC-----------------NLKEAVELGWHG 133
+ R P F RW NL+ S+ ++ + V L G
Sbjct: 172 QLRVSGQQGTPLSFQRWCNLKKCMSQLGFGNGSGGGGPAPPLGLSWIPDMLQMVGLPMQG 231
Query: 134 RVHCGLDDSMNIARLLAVIMQRGFKFSITKSLT 166
R H G+DD N+A +L +++RG +T S T
Sbjct: 232 RHHSGIDDCRNLAAVLCALLRRGLVIDVTFSST 264
>gi|328768674|gb|EGF78720.1| hypothetical protein BATDEDRAFT_32150, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 265
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 46/188 (24%)
Query: 8 KLQDFDYFVVVDFEATCDKK--IPHPQEIIEFPSVIVSGVTGQITVCFQIYAL-FLH--- 61
+ Q + ++V D EATCD E+IEFP + + G T + F+ Y LH
Sbjct: 74 RFQPYRIYLVCDIEATCDSDSGFDFASEVIEFPVIAIDGTTMETVSTFRRYCRPILHPTL 133
Query: 62 -DNWQQHMGVT-------------------------PTNFAVVTWSD---------WDCQ 86
D +Q G+T P+ V +D WD +
Sbjct: 134 TDFCKQFTGITQEQTDAADPFTVVFADFLEWMLSLYPSTDGVSALTDEVIFVTDGPWDLR 193
Query: 87 VMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLK---EAVELGWHGRVHCGLDD 141
LE E + NI +P + + IN+R +++ G + NL + + + + GR HCG DD
Sbjct: 194 DFLEKEFIYSNIQRPDFMRKIINIRSLYTELYGKEKTNLDGMLKGLGMVFEGREHCGFDD 253
Query: 142 SMNIARLL 149
+ N+AR+L
Sbjct: 254 ASNVARIL 261
>gi|426215378|ref|XP_004001949.1| PREDICTED: ERI1 exoribonuclease 3 isoform 1 [Ovis aries]
gi|119627450|gb|EAX07045.1| prion protein interacting protein, isoform CRA_d [Homo sapiens]
gi|194375784|dbj|BAG57236.1| unnamed protein product [Homo sapiens]
gi|296488925|tpg|DAA31038.1| TPA: ERI1 exoribonuclease 3 isoform 2 [Bos taurus]
Length = 160
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 28 IPHPQEI---IEFPSVIVSGVTGQITVCFQIYALFLHDNWQQHMGVTPTNFA--VVTWSD 82
+ HPQ E +I + V GQ ++ L D W G+ N VT D
Sbjct: 14 VVHPQLTPFCTELTGIIQAMVDGQPSLQ---QVLERVDEWMAKEGLLDPNVKSIFVTCGD 70
Query: 83 WDCQVMLESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVH 136
WD +VML +C++ +P YF +WINL+ +S + ++ + + L GR H
Sbjct: 71 WDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPH 130
Query: 137 CGLDDSMNIARLLAVIMQRGFKFSIT 162
G+DD NIA ++ + RGF F T
Sbjct: 131 SGIDDCKNIANIMKTLAYRGFIFKQT 156
>gi|324519006|gb|ADY47259.1| ERI1 exoribonuclease 3 [Ascaris suum]
Length = 291
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 85/204 (41%), Gaps = 47/204 (23%)
Query: 10 QDFDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVCFQIYA---------- 57
Q FDYF+V+DFEATC++ KI QEIIEFP V T Q F Y
Sbjct: 64 QYFDYFLVLDFEATCEQNAKIQPVQEIIEFPVVQFCTKTLQEVARFHEYVHPTERPVLTS 123
Query: 58 ----------------LFLHD------NWQQHMGVTPT--------NFAVVTWSDWDCQV 87
+ L D W + ++ VT DWD
Sbjct: 124 FCTNLTGIVQEMVDNQMILPDVLAKFRRWLSQQCLIDAESGDRVRNSWTFVTCGDWDLGT 183
Query: 88 MLESECRFKNIPKPSYFNRWINLRVPF--SKGDVRCNLK---EAVELGWHGRVHCGLDDS 142
+L E F+ + P YF WINL+ + +KG +L +++ GR+H G+DD
Sbjct: 184 ILPQEASFRGLHLPPYFGSWINLKKAYRNAKGYFPNSLMVMLNDLQIPHTGRLHSGIDDV 243
Query: 143 MNIARLLAVIMQRGFKFSITKSLT 166
+NI ++ + + G+ T LT
Sbjct: 244 INICAIVRKLCEDGYLLENTSYLT 267
>gi|324520531|gb|ADY47658.1| ERI1 exoribonuclease 3 [Ascaris suum]
Length = 291
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 85/204 (41%), Gaps = 47/204 (23%)
Query: 10 QDFDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVCFQIYA---------- 57
Q FDYF+V+DFEATC++ KI QEIIEFP V T Q F Y
Sbjct: 64 QYFDYFLVLDFEATCEQNAKIQPVQEIIEFPVVQFCTKTLQEVARFHEYVHPTERPVLTS 123
Query: 58 ----------------LFLHD------NWQQHMGVTPT--------NFAVVTWSDWDCQV 87
+ L D W + ++ VT DWD
Sbjct: 124 FCTNLTGIVQEMVDNQMILPDVLAKFRRWLSQQCLIDAESGDRVRNSWTFVTCGDWDLGT 183
Query: 88 MLESECRFKNIPKPSYFNRWINLRVPF--SKGDVRCNLK---EAVELGWHGRVHCGLDDS 142
+L E F+ + P YF WINL+ + +KG +L +++ GR+H G+DD
Sbjct: 184 ILPQEASFRGLHLPPYFGSWINLKKAYRNAKGYFPNSLMVMLNDLQIPHTGRLHSGIDDV 243
Query: 143 MNIARLLAVIMQRGFKFSITKSLT 166
+NI ++ + + G+ T LT
Sbjct: 244 INICAIVRKLCEDGYLLENTSYLT 267
>gi|148698604|gb|EDL30551.1| prion protein interacting protein 1, isoform CRA_b [Mus musculus]
gi|149035533|gb|EDL90214.1| similar to prion protein interacting protein 1, isoform CRA_b
[Rattus norvegicus]
Length = 160
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 28 IPHPQEI---IEFPSVIVSGVTGQITVCFQIYALFLHDNWQQHMGVTPTNFA--VVTWSD 82
+ HPQ E +I + V GQ ++ L D W G+ N VT D
Sbjct: 14 VVHPQLTPFCTELTGIIQAMVDGQPSLQ---QVLERVDEWMAKEGLLDPNVKSIFVTCGD 70
Query: 83 WDCQVMLESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVH 136
WD +VML +C + +P YF +WINL+ +S + ++ + + L GR H
Sbjct: 71 WDLKVMLPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPH 130
Query: 137 CGLDDSMNIARLLAVIMQRGFKFSIT 162
G+DD NIA ++ + RGF F T
Sbjct: 131 SGIDDCKNIANIMKTLAYRGFIFKQT 156
>gi|321471838|gb|EFX82810.1| hypothetical protein DAPPUDRAFT_195366 [Daphnia pulex]
Length = 228
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 10 QDFDYFVVVDFEATCDKK--IPHPQEIIEFPSVIV------------------------- 42
Q F+ +V+DFEATCD + PQEIIEFP + V
Sbjct: 32 QRFERLLVLDFEATCDSQRGTIRPQEIIEFPVLNVETNGFETVGTFHRYVKPQVHPTLTP 91
Query: 43 --SGVTGQITVCFQIYALF---LHD--NWQQHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+ +TG I + A + D W + FAVVT DWD + +L +
Sbjct: 92 FCTSLTGIIQDMVEDAAPLKEVMEDFHKWLLSQHLLNKEFAVVTCGDWDLKELLPRQFLH 151
Query: 96 KNIPKPSYFNRWINLRVPF--SKGDVRCNLKEAV---ELGWHGRVHCGLDDSMNIARLLA 150
P+YF WIN+++ F S G NL + +L GR+H G+DD NIA ++
Sbjct: 152 TGQVVPAYFKSWINIKMIFAESTGVYPRNLPHMLSHAKLVHFGRLHSGIDDCHNIAAVVR 211
Query: 151 VIMQRGFKFSITKSL 165
+ +R ++ +T L
Sbjct: 212 FLGRRSSQWRLTSFL 226
>gi|449456609|ref|XP_004146041.1| PREDICTED: uncharacterized exonuclease domain-containing protein
At3g15140-like [Cucumis sativus]
gi|449510343|ref|XP_004163638.1| PREDICTED: uncharacterized exonuclease domain-containing protein
At3g15140-like [Cucumis sativus]
Length = 325
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 59/215 (27%)
Query: 8 KLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA---------- 57
+ QDFDYF+V+D E EIIEFP ++V+ T +T F +
Sbjct: 111 RTQDFDYFLVLDLEGKV--------EIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRI 162
Query: 58 ----------------------------------LFLHDNWQQHMGVTPTNFAVVTWSDW 83
L H W++ +G A VT +W
Sbjct: 163 NEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVQHQLWRKELGGVLDRAAFVTCGNW 222
Query: 84 DCQVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGWHGRVHCG 138
D + + +C + P YF WIN++ + K + +E+ G H G
Sbjct: 223 DIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYTKKATGMATMMRQLEMPLVGSHHLG 282
Query: 139 LDDSMNIARLLAVIMQRGFKFSIT--KSLTTPQDI 171
+DD+ NI R+L ++ G +T ++ +PQ +
Sbjct: 283 IDDTKNIVRVLQRMVGDGAHLQVTARRNPKSPQHV 317
>gi|196009752|ref|XP_002114741.1| hypothetical protein TRIADDRAFT_28382 [Trichoplax adhaerens]
gi|190582803|gb|EDV22875.1| hypothetical protein TRIADDRAFT_28382 [Trichoplax adhaerens]
Length = 276
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 41/185 (22%)
Query: 13 DYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYAL------------ 58
DY+ V+DFEATC++ P + EIIEFP+++V+ T + F Y
Sbjct: 79 DYYCVIDFEATCEEVNPRKYKHEIIEFPALMVNARTLAVESQFHFYCRPVMNPKLSSFCT 138
Query: 59 -----------------FLHDNWQQHMG--VTPTNFAVVTWSDWDCQVMLESECRFKNIP 99
+ N+Q+ + + + F VVT +D L +C+ IP
Sbjct: 139 KLTGIDQKTIDSADAFKVVFQNFQKWLEDVLGESTFVVVTDGPFDITRFLTIQCKVDKIP 198
Query: 100 KPSYFNRWINLRVPFS-----KGDVRCNLKE---AVELGWHGRVHCGLDDSMNIARLLAV 151
P + + W NL+ F G L++ A+++ GR+H G+DD+ NIA++L
Sbjct: 199 MPYWASNWTNLKRTFKAFYKLSGQRFPTLQDMLGALKIPHDGRLHSGIDDAKNIAKILCQ 258
Query: 152 IMQRG 156
+++ G
Sbjct: 259 LIRDG 263
>gi|339249059|ref|XP_003373517.1| conserved hypothetical protein [Trichinella spiralis]
gi|316970336|gb|EFV54297.1| conserved hypothetical protein [Trichinella spiralis]
Length = 747
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 84/211 (39%), Gaps = 57/211 (27%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQITVCFQIYA--- 57
N FL L++ +V+DFEATCD+ I PQEIIEFP V S +I F Y
Sbjct: 544 NNFLNIALENL---LVLDFEATCDQPIQIEPQEIIEFPCVNFSLKEDRIVSQFHSYVRPE 600
Query: 58 -----------------------------LFLHDNWQQHMGVTPTN----FAVVTWSDWD 84
L D W + + +VT WD
Sbjct: 601 VHPNLSSFCTNLTGIVQDMVNNQPTLTEVLTQFDGWLAEQQLLTDEQRDKWTMVTCGSWD 660
Query: 85 CQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDVRCN-----------LKEAVELGWHG 133
L ++C++ P P YF WIN++ + CN + +++ + G
Sbjct: 661 LNYQLRNQCKWMGHPVPLYFKSWINIK------KIACNATGNYPKSLIAMMQSLGVEHEG 714
Query: 134 RVHCGLDDSMNIARLLAVIMQRGFKFSITKS 164
R+H G+DD NI R + + +R F +T S
Sbjct: 715 RLHSGIDDVKNIVRTVQELKRRKQPFYVTDS 745
>gi|261327259|emb|CBH10235.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 452
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 44/209 (21%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATCD-KKIPHPQEIIEFPSVIVSGVTGQI--TVCFQIYA- 57
+P P Q FDY +VVD EATC+ K +P EIIE P V+V G + F+ Y
Sbjct: 131 DPGNPFDRQLFDYLIVVDVEATCEYKNDNYPHEIIELPGVLVDVRRGVVDKERSFRSYVR 190
Query: 58 -------------------------------LFLHDNWQQHMGVTPTNFAVVTWSDWDCQ 86
+ L + W A+ T WD +
Sbjct: 191 PQRNPLLTPFCKALTGITQEDVDSAPTLQEVVKLFEQWYTETIPRGAKVALATDGPWDLK 250
Query: 87 VMLESECRFKN-IPKPSYFNRWINLRVPFSKGDVRCN------LKEAVELGWHGRVHCGL 139
+ ++ I P+ F ++++R F+ R + E ++L + GR HCG
Sbjct: 251 NFVHEHSILRDHISFPTIFYEYLDIRTTFAHFFNRGTPLKLVPMLERLQLTFEGREHCGF 310
Query: 140 DDSMNIARLLAVIMQRG--FKFSITKSLT 166
DD++NIARL +M+ G F + + LT
Sbjct: 311 DDAVNIARLAVSMMRAGCVFNYLVAIPLT 339
>gi|307104722|gb|EFN52974.1| hypothetical protein CHLNCDRAFT_26251 [Chlorella variabilis]
Length = 194
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 79 TWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGWHG 133
TW DWD +V ++ EC+++ I +P + RWI++ + KG++R + EA ELGW G
Sbjct: 91 TWRDWDLKVQMQMECKWRRIEQPRWQKRWIDIGAVWFKHSGKKGNLRASC-EAAELGWDG 149
Query: 134 RVHCGLDDSMNIAR 147
R H +DD+ N AR
Sbjct: 150 RAHSAIDDARNTAR 163
>gi|72387357|ref|XP_844103.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62360611|gb|AAX81022.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70800635|gb|AAZ10544.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 452
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 44/209 (21%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATCD-KKIPHPQEIIEFPSVIVSGVTGQI--TVCFQIYA- 57
+P P Q FDY +VVD EATC+ K +P EIIE P V+V G + F+ Y
Sbjct: 131 DPGNPFDRQLFDYLIVVDVEATCEYKNDNYPHEIIELPGVLVDVRRGVVDKERSFRSYVR 190
Query: 58 -------------------------------LFLHDNWQQHMGVTPTNFAVVTWSDWDCQ 86
+ L + W A+ T WD +
Sbjct: 191 PQRNPLLTPFCKALTGITQEDVDSAPTLQEVVKLFEQWYTETIPRGAKVALATDGPWDLK 250
Query: 87 VMLESECRFKN-IPKPSYFNRWINLRVPFSKGDVRCN------LKEAVELGWHGRVHCGL 139
+ ++ I P+ F ++++R F+ R + E ++L + GR HCG
Sbjct: 251 NFVHEHSILRDHISFPTIFYEYLDIRTTFAHFFNRGTPLKLVPMLERLQLTFEGREHCGF 310
Query: 140 DDSMNIARLLAVIMQRG--FKFSITKSLT 166
DD++NIARL +M+ G F + + LT
Sbjct: 311 DDAVNIARLAVSMMRAGCVFNYLVAIPLT 339
>gi|301781889|ref|XP_002926359.1| PREDICTED: ERI1 exoribonuclease 3-like isoform 2 [Ailuropoda
melanoleuca]
Length = 160
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 28 IPHPQEI---IEFPSVIVSGVTGQITVCFQIYALFLHDNWQQHMGVTPTNFA--VVTWSD 82
+ HPQ E +I + V GQ ++ L D W G+ N VT D
Sbjct: 14 VVHPQLTPFCTELTGIIQAMVDGQPSLQ---QVLERVDEWMAKEGLLDPNVKSIFVTCGD 70
Query: 83 WDCQVMLESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVH 136
WD +VML +C++ +P YF +WINL+ +S + ++ + + L GR H
Sbjct: 71 WDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPH 130
Query: 137 CGLDDSMNIARLLAVIMQRGFKFSIT 162
G+DD NIA ++ + +GF F T
Sbjct: 131 SGIDDCKNIANIMKTLAYQGFIFKQT 156
>gi|242018695|ref|XP_002429809.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis]
gi|212514827|gb|EEB17071.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis]
Length = 237
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 53/203 (26%)
Query: 8 KLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIV------------------------- 42
K+ ++DY +++DFEATCDKK QEIIEFP + +
Sbjct: 39 KIDNYDYLLILDFEATCDKK-KFEQEIIEFPCLKINMNTLREESRFHKYVRPVINPKLTN 97
Query: 43 --SGVTGQITVCF-------QIYALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESEC 93
+ +TG I ++Y LF + W++ G+T N VT DWD M+ +C
Sbjct: 98 FCTELTGIIQEMVDDEPTFNEVYLLF--EQWRKSEGLTDDNSIYVTSGDWDLGYMMPRQC 155
Query: 94 RFKNIPKPSYFNRWINLRVPFSKGDVRCNLKEAVE------LGWHGRVHCGLDDSMNIAR 147
I PS+ WI+++ + + C +E + + GR H G+ I R
Sbjct: 156 AISKIQVPSHMMTWIDIKKLYGI-NYNCYCGSLIEIFRVFNIEFDGRNHSGI-----IKR 209
Query: 148 LLAVIMQRGFKFSITKSLTTPQD 170
L + KF+ T +LT ++
Sbjct: 210 LSKL----NIKFTPTSNLTLSKN 228
>gi|239793055|dbj|BAH72791.1| ACYPI010006 [Acyrthosiphon pisum]
Length = 340
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 78/191 (40%), Gaps = 46/191 (24%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
F YFVV+D EATC + P + EIIEFP+V+V +I FQ +
Sbjct: 92 FPYFVVIDIEATCTENNPADYKFEIIEFPAVLVDAKKRKIIDHFQAFVKPSINPKLSEFC 151
Query: 58 --------------------LFLHDNW-QQHMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
L W ++H F++VT L +C
Sbjct: 152 IKLTGITQDQIDNADSFEVCLTRFTKWLEEHELGIKHKFSIVTDGPLIWLRFLYGQCLMS 211
Query: 97 NIPKPSYFNRWINLRVPFS--------KGDVRCNLKEAV---ELGWHGRVHCGLDDSMNI 145
IP P + +WIN+R F K V CNL + ++ + G H GLDDS NI
Sbjct: 212 EIPYPKFATKWINIRKVFKAFYFTKQVKYSVPCNLNAMLTFLDMEFEGNPHSGLDDSFNI 271
Query: 146 ARLLAVIMQRG 156
+R+ +++ G
Sbjct: 272 SRICIRLLEDG 282
>gi|12654485|gb|AAH01072.1| ERI3 protein [Homo sapiens]
gi|13325281|gb|AAH04456.1| ERI3 protein [Homo sapiens]
Length = 128
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 62 DNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS---- 115
D W G+ N VT DWD +VML +C++ +P YF +WINL+ +S
Sbjct: 16 DEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMG 75
Query: 116 --KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
+ ++ + + L GR H G+DD NIA ++ + RGF F T
Sbjct: 76 CWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQT 124
>gi|324515366|gb|ADY46181.1| 3'-5' exonuclease eri-1 [Ascaris suum]
Length = 402
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 45/204 (22%)
Query: 12 FDYFVVVDFEATCDKKI-PHPQEIIEFPSVIVSGVTGQITVCFQIYAL------------ 58
++YFVV+DFE TC+ ++ + EIIEFP+V++ +I F +
Sbjct: 147 YEYFVVMDFECTCEDEVYEYEHEIIEFPAVLIDVRNRRIVDTFHSHVRPRINPKLSEFCS 206
Query: 59 -------FLHDN-------------WQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
+ DN W Q +G +A VT WD + +C
Sbjct: 207 RLTGVTQEMVDNALPFVDVFDSFRMWMQSHRLGHNNARYAFVTDGPWDIAKFFQMQCLQS 266
Query: 97 NIPK-PSYFNRWINLRVPFS----KGD--VRCNLKEAV-ELG--WHGRVHCGLDDSMNIA 146
+ P F +IN+R F KG + NL + ELG + GR HCGLDDS NIA
Sbjct: 267 GLGSVPHDFRHYINIRKAFLNKYLKGHHAQKTNLSGMLSELGMTFEGREHCGLDDSKNIA 326
Query: 147 RLLAVIMQRGFKFSITKSLTTPQD 170
R++ +++ + I + + D
Sbjct: 327 RIVIRMLEDRSELRINERIARGSD 350
>gi|51260906|gb|AAH79640.1| Eri3 protein [Mus musculus]
Length = 135
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 62 DNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS---- 115
D W G+ N VT DWD +VML +C + +P YF +WINL+ +S
Sbjct: 23 DEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCHYLGLPVADYFKQWINLKKAYSFAMG 82
Query: 116 --KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
+ ++ + + L GR H G+DD NIA ++ + RGF F T
Sbjct: 83 CWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQT 131
>gi|402588418|gb|EJW82351.1| exonuclease [Wuchereria bancrofti]
Length = 384
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 41/195 (21%)
Query: 12 FDYFVVVDFEATCDKKI-PHPQEIIEFPSVIV------------------------SGVT 46
+DYFVV+DFE TC+ + + EIIEFP+V+V +G+T
Sbjct: 134 YDYFVVIDFECTCEADLYDYNHEIIEFPAVLVDVDVFHSYVRPLANPQLSEFCSVFTGIT 193
Query: 47 GQI---TVCFQIYALFLHDNWQQ--HMGVTPTNFAVVTWSDWDCQVMLESEC-RFKNIPK 100
++ + F I L W Q +G +A VT WD + +C + K
Sbjct: 194 QEMVDKALPF-IDVLDSFRTWMQLHRLGQKDVRYAFVTDGPWDIAKFFQMQCIQSKLNAV 252
Query: 101 PSYFNRWINLRVPFSKGDVRCNLKEAVELG---------WHGRVHCGLDDSMNIARLLAV 151
P F +IN+R F+ + + + + LG + GR H GLDDS NIAR++
Sbjct: 253 PHDFRFYINIRRSFANKYCKKHSMQKINLGGMLTFLNMKFEGREHSGLDDSKNIARIVIK 312
Query: 152 IMQRGFKFSITKSLT 166
+++ + + + L
Sbjct: 313 MLEDRSELRVNEKLV 327
>gi|390370627|ref|XP_001187567.2| PREDICTED: 3'-5' exoribonuclease 1-like [Strongylocentrotus
purpuratus]
Length = 419
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
FDY V+D EATC + P + EIIEFP V+++ T QI F +
Sbjct: 223 FDYLCVIDVEATCQEINPVDYIHEIIEFPIVLLNTKTLQIEDTFDAFCKPVINPQLSKFC 282
Query: 57 -------------------ALFLHDNWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
L + W + G+ + +FA+ T D + L+ +C
Sbjct: 283 SQLTNISQKMVDKADEFPTVLEKAERWMRQKGLGSKHSFAIATDCSLDMDLYLKLQCLVS 342
Query: 97 NIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAV 151
I P Y W+N+ F+ R L+ ++ L + G+ H G+DD+ NIAR+
Sbjct: 343 EISYPQYAKEWVNISKVFANLYKTKRLPLRAMLDSTGLAFIGQPHRGIDDARNIARVALQ 402
Query: 152 IMQRGFKFSITKSLT 166
+++ G + + LT
Sbjct: 403 LIEDGAEMKYNERLT 417
>gi|449476440|ref|XP_002192871.2| PREDICTED: ERI1 exoribonuclease 2 [Taeniopygia guttata]
Length = 451
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 76 AVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDVR--CNLKEAVE---LG 130
A VTW+DWD V L EC+ K + KP N WI+L+ + R L A++ +
Sbjct: 119 AFVTWTDWDLGVCLHYECKRKQLRKPDILNSWIDLKATYRAFYNRKPKGLNGALQDLGIA 178
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
+ GR H GLDDS N ARL ++ G +TKSL
Sbjct: 179 FEGREHSGLDDSRNTARLAWRLICDGCVLKVTKSL 213
>gi|146087811|ref|XP_001465911.1| putative phosphotransferase [Leishmania infantum JPCM5]
gi|134070012|emb|CAM68342.1| putative phosphotransferase [Leishmania infantum JPCM5]
Length = 570
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 82/209 (39%), Gaps = 57/209 (27%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQ------------- 54
Q FD +VV+DFEATC D++I E+IEFP ++V T FQ
Sbjct: 53 QPFDAYVVLDFEATCEADRRIAD-AEVIEFPMILVDARTATPVAEFQRYVRPVKNPVLSR 111
Query: 55 ---------------------IYALFLHDNWQQHMGVTPT--NFAVVTWSDWDCQVMLES 91
+Y L + +G P ++ VVT DWD + ML +
Sbjct: 112 FCTELTGITQDMVSGRDPFPVVYCEALQFLAEAGLGDAPPMRSYCVVTCGDWDLKTMLPA 171
Query: 92 ECRFKNIP-KPSYFNRWINLR-----------------VPFSKGDVRCNLKEAVELGWHG 133
+ R P F RW NL+ P + ++ + + L G
Sbjct: 172 QMRVSGQQGTPLSFQRWCNLKKCMSQLGFGNGSGCGGAAPPLRPSGMPDMLQMLGLPLQG 231
Query: 134 RVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
R H G+DD N+ +L +++RG +T
Sbjct: 232 RHHSGIDDCRNLTAVLCALLRRGLVIDVT 260
>gi|398015969|ref|XP_003861173.1| phosphotransferase, putative [Leishmania donovani]
gi|322499398|emb|CBZ34471.1| phosphotransferase, putative [Leishmania donovani]
Length = 570
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 82/209 (39%), Gaps = 57/209 (27%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQ------------- 54
Q FD +VV+DFEATC D++I E+IEFP ++V T FQ
Sbjct: 53 QPFDAYVVLDFEATCEEDRRIAD-AEVIEFPMILVDARTATPVAEFQRYVRPVKNPVLSR 111
Query: 55 ---------------------IYALFLHDNWQQHMGVTPT--NFAVVTWSDWDCQVMLES 91
+Y L + +G P ++ VVT DWD + ML +
Sbjct: 112 FCTELTGITQDMVSGRDPFPVVYCEALQFLAEAGLGDAPPMRSYCVVTCGDWDLKTMLPA 171
Query: 92 ECRFKNIP-KPSYFNRWINLR-----------------VPFSKGDVRCNLKEAVELGWHG 133
+ R P F RW NL+ P + ++ + + L G
Sbjct: 172 QMRVSGQQGTPLSFQRWCNLKKCMSQLGFGNGSGCGGAAPPLRPSGMPDMLQMLGLPLQG 231
Query: 134 RVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
R H G+DD N+ +L +++RG +T
Sbjct: 232 RHHSGIDDCRNLTAVLCALLRRGLVIDVT 260
>gi|302767084|ref|XP_002966962.1| hypothetical protein SELMODRAFT_87227 [Selaginella moellendorffii]
gi|300164953|gb|EFJ31561.1| hypothetical protein SELMODRAFT_87227 [Selaginella moellendorffii]
Length = 315
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 79/211 (37%), Gaps = 62/211 (29%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQI---------------- 49
P Q FD F+V+D E EI+EFP V++ T +
Sbjct: 97 PLPRQPFDKFLVLDLEGKV--------EILEFPVVLLDAKTLTVVDRFHRFVRPCELKGS 148
Query: 50 ----------------------TVCFQIYALFLHDNWQQHMGVTP-----TNFAVVTWSD 82
+ FQ L D +QH P N A VT +
Sbjct: 149 RLQAYIAGKYGRWKLERLWEDTAIPFQETLLAFEDWLEQHSLRDPESHLLKNSAFVTCGN 208
Query: 83 WDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----------SKGDVRCNLKEAVELGW 131
WD + + +C IP PSYF WINL+ F SK ++ ++++
Sbjct: 209 WDIKTKIPEQCITSGIPLPSYFCEWINLKDIFLNFYNKRARAKSKAPGMLSMMRSLDMRV 268
Query: 132 HGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
G H GLDD+ NIAR++ + G SIT
Sbjct: 269 QGSHHLGLDDAHNIARIVQKMESDGAVLSIT 299
>gi|25148196|ref|NP_741293.1| Protein ERI-1, isoform a [Caenorhabditis elegans]
gi|351064942|emb|CCD73975.1| Protein ERI-1, isoform a [Caenorhabditis elegans]
Length = 448
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 45/197 (22%)
Query: 12 FDYFVVVDFEATCDKKI-PHPQEIIEFPSVIVSGVTGQITVCFQIY-------------- 56
FDY + +DFE TC + I +P EIIE P+V++ +I F+ Y
Sbjct: 148 FDYLIAIDFECTCVEIIYDYPHEIIELPAVLIDVREMKIISEFRTYVRPVRNPKLSEFCM 207
Query: 57 ------------ALFLHDNWQQ--------HMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
A + + Q+ ++G + FA VT D ++ +C
Sbjct: 208 QFTKIAQETVDAAPYFREALQRLYTWMRKFNLGQKNSRFAFVTDGPHDMWKFMQFQCLLS 267
Query: 97 NIPKPSYFNRWINLRVPFS-------KGDVRC---NLKEAVELGWHGRVHCGLDDSMNIA 146
NI P F +IN++ F KG+ + N+ E ++L + G H GLDD+ NIA
Sbjct: 268 NIRMPHMFRSFINIKKTFKEKFNGLIKGNGKSGIENMLERLDLSFVGNKHSGLDDATNIA 327
Query: 147 RLLAVIMQRGFKFSITK 163
+ +M+ + I +
Sbjct: 328 AIAIQMMKLKIELRINQ 344
>gi|340369543|ref|XP_003383307.1| PREDICTED: 3'-5' exoribonuclease 1-like [Amphimedon queenslandica]
Length = 301
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 42/184 (22%)
Query: 14 YFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVCFQIY--------------- 56
+ +V+DFEATC+ + EIIEFP ++ T +I F Y
Sbjct: 99 FLLVLDFEATCESVNSSDYIHEIIEFPVQLLDISTLKIVDTFHSYCRPCLNEKLSSFCTK 158
Query: 57 ---------------ALFLHD--NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFKNI 98
A D W + + T NF++VT WD + L +C +
Sbjct: 159 LTGIEQSIVDKAPTFAEVFDDFTEWMEERELGTKHNFSLVTDCPWDIRECLFPQCALSKV 218
Query: 99 PKPSYFNRWINLRVPF------SKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVI 152
P Y ++WI+ R F S G++ N+ + + + GR H GLDDS NIAR+++ +
Sbjct: 219 SFPHYASKWIDARKLFSSFYQISSGNL-ANMLTQLGMSFEGREHSGLDDSKNIARIVSQL 277
Query: 153 MQRG 156
+ G
Sbjct: 278 ISDG 281
>gi|157870091|ref|XP_001683596.1| putative phosphotransferase [Leishmania major strain Friedlin]
gi|68126662|emb|CAJ04503.1| putative phosphotransferase [Leishmania major strain Friedlin]
Length = 582
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 82/210 (39%), Gaps = 58/210 (27%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQ------------- 54
Q FD +VV+DFEATC D++I E+IEFP V++ T FQ
Sbjct: 53 QPFDAYVVLDFEATCEADRRISD-AEVIEFPMVLIDARTATPVAEFQRYVRPVKNPVLSR 111
Query: 55 ---------------------IYALFLHDNWQQHMGVTPT--NFAVVTWSDWDCQVMLES 91
+Y L + +G P ++ VVT DWD + ML +
Sbjct: 112 FCTELTGITQDMVSRCDPFPVVYCEALQFLAEAGLGDAPPMRSYCVVTCGDWDLKTMLPA 171
Query: 92 ECRFKNIP-KPSYFNRWINLRVPFSKGDVRC------------------NLKEAVELGWH 132
+ R P F RW NL+ S+ ++ + + L
Sbjct: 172 QMRVSGQQGTPLSFQRWCNLKKRMSQLGFGNGSGCGGGAAPPLGPSGMPDMLQMLGLPLQ 231
Query: 133 GRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
GR H G+DD N+A L +++RG +T
Sbjct: 232 GRQHSGIDDCRNLAAALCTLLRRGLVIDVT 261
>gi|342180402|emb|CCC89879.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 382
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 79/195 (40%), Gaps = 46/195 (23%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQI--TVCFQIYA----- 57
P Q FDY +VVD EATCD +P EIIE P V+V G + F Y
Sbjct: 61 PLDRQLFDYLIVVDVEATCDDNSKNYPHEIIELPGVLVDVRRGIVDKQRSFHSYVRPRRN 120
Query: 58 ---------------------------LFLHDNWQQHMGVTPTNFAVVTWSD--WDCQ-V 87
+ L + W +M P VV +D WD +
Sbjct: 121 PILTPFCKALTGIKQEDVDRAPSLPEVVKLFEEW--YMETIPLGAKVVLATDGPWDLKNF 178
Query: 88 MLESECRFKNIPKPSYFNRWINLRVPFSKGDVR------CNLKEAVELGWHGRVHCGLDD 141
+ E ++ P+ F +I++R FS R + + L + GR HCG DD
Sbjct: 179 VYEHSVLRDHVSFPTLFWEYIDIRTTFSNHFNRGVPIKLTAMLHRMHLEFEGRQHCGFDD 238
Query: 142 SMNIARLLAVIMQRG 156
++NIARL +M+ G
Sbjct: 239 AVNIARLAVAMMRAG 253
>gi|449278956|gb|EMC86684.1| Exonuclease domain-containing protein 1, partial [Columba livia]
Length = 186
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 74/184 (40%), Gaps = 53/184 (28%)
Query: 35 IEFPSVIVSGVTGQITVCFQIYAL-----FLHDNWQQHMGVT--------PTNFAV---- 77
+EFP+V+++ TG+I F Y L D ++ G+T P N +
Sbjct: 1 VEFPAVLLNTATGEIEAEFHTYVQPQKHPVLSDFCKELTGITQSQVDEAVPLNICLSQFW 60
Query: 78 -------------------------------VTWSDWDCQVMLESECRFKNIPKPSYFNR 106
VTW+DWD V L+ EC+ K + KP N
Sbjct: 61 KWIQKIQREKKIIFSSDIPSHSTSEAKLCTFVTWTDWDLGVCLQYECKRKQLRKPDILNS 120
Query: 107 WINLRVPF-----SKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSI 161
WI+L+ + K + + + + GR H GLDDS N ARL ++ G +
Sbjct: 121 WIDLKATYRTFYNRKPKGLSGALQDLGIAFAGREHSGLDDSRNTARLAWRLICDGCVLKV 180
Query: 162 TKSL 165
TKSL
Sbjct: 181 TKSL 184
>gi|323455145|gb|EGB11014.1| hypothetical protein AURANDRAFT_6072, partial [Aureococcus
anophagefferens]
Length = 194
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 77/196 (39%), Gaps = 53/196 (27%)
Query: 12 FDYFVVVDFEATC------DKKIPHPQEIIEFPSVIVSGVTGQITVCF------------ 53
+ Y VVVDFE TC KK P EIIEFP+V+V G+ F
Sbjct: 1 YRYLVVVDFECTCVADTTYQKKTPFSHEIIEFPAVVVDLTLGESQDVFARPTFQRFVRPT 60
Query: 54 ---------------------------QIYALFLHDNWQQHMGVTPTNFAVVTWSDWDCQ 86
+ A F W + + P +A+ WD +
Sbjct: 61 ERPRLSDFCTKLTGISQETVDAAEPLADVLAAF--RAWLEEQNLAPGTYAMAADGPWDLR 118
Query: 87 VMLESECRFKNIPKPSYFNRWINLRVPFSKG-DVR--CNLKEAVEL---GWHGRVHCGLD 140
L EC K++ + W+++ + K DV+ NL+ + L + GR H GLD
Sbjct: 119 KFLLGECARKHLAADPRWRTWVDVSLHLRKHYDVKRPGNLENKLALLGLAFEGRPHSGLD 178
Query: 141 DSMNIARLLAVIMQRG 156
D+ NIARL + + G
Sbjct: 179 DARNIARLALRLRRDG 194
>gi|302755252|ref|XP_002961050.1| hypothetical protein SELMODRAFT_71144 [Selaginella moellendorffii]
gi|300171989|gb|EFJ38589.1| hypothetical protein SELMODRAFT_71144 [Selaginella moellendorffii]
Length = 261
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 79/211 (37%), Gaps = 62/211 (29%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQI---------------- 49
P Q FD F+V+D E EI+EFP V++ T +
Sbjct: 43 PLPRQPFDKFLVLDLEGKV--------EILEFPVVLLDAKTLTVVDRFHRFVRPCELKGS 94
Query: 50 ----------------------TVCFQIYALFLHDNWQQHMGVTP-----TNFAVVTWSD 82
+ FQ L D +QH P N A VT +
Sbjct: 95 RLQAYIAGKYGRWKLERLWEDTAIPFQETLLAFEDWLEQHSLRDPESHLLKNSAFVTCGN 154
Query: 83 WDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----------SKGDVRCNLKEAVELGW 131
WD + + +C IP PSYF WINL+ F SK ++ ++++
Sbjct: 155 WDIKTKIPEQCITSGIPLPSYFCEWINLKDIFLNFYNKRARAKSKAPGMLSMMRSLDMRV 214
Query: 132 HGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
G H GLDD+ NIAR++ + G SIT
Sbjct: 215 QGSHHLGLDDAHNIARIIQKMESDGAVLSIT 245
>gi|119920012|ref|XP_001253741.1| PREDICTED: 3'-5' exoribonuclease 1 [Bos taurus]
gi|297492734|ref|XP_002699843.1| PREDICTED: 3'-5' exoribonuclease 1 [Bos taurus]
gi|296471031|tpg|DAA13146.1| TPA: three prime histone mRNA exonuclease 1-like [Bos taurus]
Length = 370
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 44/197 (22%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEF V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFIHEIIEFSVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
+W + + T ++++T WD L +C+
Sbjct: 187 INLTGITQDQVDKADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLS 246
Query: 97 NIPKPSYFNRWINL--------RVPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P + +WI++ +VP S+ + L E + + + G H GLDDS N+AR+
Sbjct: 247 RLKYPPFAKKWISIQKSYGNFYKVPRSQIKLTIML-EKLGMDYDGWPHSGLDDSKNVARI 305
Query: 149 LAVIMQRGFKFSITKSL 165
++Q G + + + +
Sbjct: 306 AVRMLQDGCELRVNEKM 322
>gi|341884091|gb|EGT40026.1| hypothetical protein CAEBREN_30328 [Caenorhabditis brenneri]
Length = 442
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 45/196 (22%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKI-PHPQEIIEFPSVIVSGVTGQITVCFQIY----- 56
P + L+ FDY + DFE TC + I +P EIIE P+V++ +I F+ Y
Sbjct: 144 PVGNKTLRYFDYLIATDFECTCVEVIYDYPHEIIELPAVLIDVRDKRIISEFRTYVRPVR 203
Query: 57 ---------------------------ALFLHDNWQQHMGV--TPTNFAVVTWSDWDCQV 87
AL W + G+ T FA VT D
Sbjct: 204 NPVLSDFCVDFTKIAQETVDEAPYFREALEKLYQWMRKFGLGEKKTRFAFVTDGPHDMWK 263
Query: 88 MLESECRFKNIPKPSYFNRWINLRVPFSK---GDVRCNLKEAVE-------LGWHGRVHC 137
++ +C NI P F +IN++ + + G V+ N K +E L + G H
Sbjct: 264 FMQFQCLLSNIRMPHMFRNFINIKKTYKENFNGLVKGNGKSGIENMLDGLGLSFIGNKHS 323
Query: 138 GLDDSMNIARLLAVIM 153
GLDD+ NIA+++ +M
Sbjct: 324 GLDDAKNIAQIVIHLM 339
>gi|268554023|ref|XP_002634999.1| C. briggsae CBR-ERI-1 protein [Caenorhabditis briggsae]
Length = 578
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 45/206 (21%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKI-PHPQEIIEFPSVIVSGVTGQITVCFQIY----- 56
P + L+ FDY + +DFE TC + I +P EIIE P+V++ +I F+ Y
Sbjct: 130 PNSDKTLRYFDYLIAIDFECTCVEIIYDYPHEIIELPAVLIDVREMKIISEFRSYVRPVK 189
Query: 57 ---------------------------ALFLHDNWQQHMGVTPTN--FAVVTWSDWDCQV 87
AL W + G+ N FA VT D
Sbjct: 190 NPKLSDFCIQFTKIAQETVDEAPYFREALEKLMQWMRKFGLGEKNTRFAFVTDGPHDMWK 249
Query: 88 MLESECRFKNIPKPSYFNRWINLRVPFS-------KGDVRC---NLKEAVELGWHGRVHC 137
++ +C NI P F +IN++ F KG+ + N+ E ++L + G H
Sbjct: 250 FMQFQCILSNIRMPHMFRNFINIKKTFKEKFNGLMKGNGKSGIENMLERLDLTFIGNKHS 309
Query: 138 GLDDSMNIARLLAVIMQRGFKFSITK 163
GLDD+ NIA++ +M+ + I +
Sbjct: 310 GLDDARNIAQIAIQMMKLKIELRINQ 335
>gi|389601394|ref|XP_001565349.2| putative phosphotransferase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505025|emb|CAM42259.2| putative phosphotransferase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 575
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 82/203 (40%), Gaps = 51/203 (25%)
Query: 10 QDFDYFVVVDFEATCD--KKIPHPQEIIEFPSVIVSGVTGQITVCFQIYALFLHD----- 62
Q FD ++V+D EATC+ ++I E+IEFP V+V T FQ Y + +
Sbjct: 47 QPFDAYIVLDLEATCEAGRRITD-AEVIEFPMVLVDPRTATQVAEFQRYVRPVKNPMLSR 105
Query: 63 ----------NWQQH-------------------MGVTP--TNFAVVTWSDWDCQVMLES 91
N H +G P ++ VVT DWD + ML S
Sbjct: 106 FCTELTGITQNMVSHRDPFPVVYCEALQFLAEAGLGDAPPLRSYCVVTCGDWDLKTMLPS 165
Query: 92 ECRFKNIP-KPSYFNRWINLRVPFSKGDVR-----------CNLKEAVELGWHGRVHCGL 139
+ R P F RW NL+ S +R ++ + L GR H G+
Sbjct: 166 QIRISGQQGTPLSFQRWCNLKKYMSGLGLRDGGERGGPTDMPDMLRILGLPHQGRHHSGI 225
Query: 140 DDSMNIARLLAVIMQRGFKFSIT 162
DD NIA +L +++RG T
Sbjct: 226 DDCRNIAAVLCALLKRGLVVDTT 248
>gi|114053091|ref|NP_001039944.1| ERI1 exoribonuclease 3 isoform 2 [Bos taurus]
gi|82571565|gb|AAI10160.1| Exoribonuclease 3 [Bos taurus]
Length = 160
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 28 IPHPQEI---IEFPSVIVSGVTGQITVCFQIYALFLHDNWQQHMGVTPTNFA--VVTWSD 82
+ HPQ E +I + V GQ ++ L D W G+ N VT D
Sbjct: 14 VVHPQLTPFCTELTGIIQAMVDGQPSLQ---QVLERVDEWMAKEGLLDPNVKSIFVTCGD 70
Query: 83 WDCQVMLESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVH 136
WD +VML +C++ +P YF +WINL+ +S + ++ + + L GR H
Sbjct: 71 WDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPH 130
Query: 137 CGLDDSMNIARLLAVIMQRGFKFSIT 162
G+DD NIA ++ + R F F T
Sbjct: 131 SGIDDCKNIANIMKTLAYRCFIFKQT 156
>gi|25148199|ref|NP_741292.1| Protein ERI-1, isoform b [Caenorhabditis elegans]
gi|45476772|sp|O44406.2|ERI1_CAEEL RecName: Full=3'-5' exonuclease eri-1; AltName: Full=Enhanced RNAi
protein
gi|351064943|emb|CCD73976.1| Protein ERI-1, isoform b [Caenorhabditis elegans]
Length = 582
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 45/197 (22%)
Query: 12 FDYFVVVDFEATCDKKI-PHPQEIIEFPSVIVSGVTGQITVCFQIY-------------- 56
FDY + +DFE TC + I +P EIIE P+V++ +I F+ Y
Sbjct: 148 FDYLIAIDFECTCVEIIYDYPHEIIELPAVLIDVREMKIISEFRTYVRPVRNPKLSEFCM 207
Query: 57 ------------ALFLHDNWQQ--------HMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
A + + Q+ ++G + FA VT D ++ +C
Sbjct: 208 QFTKIAQETVDAAPYFREALQRLYTWMRKFNLGQKNSRFAFVTDGPHDMWKFMQFQCLLS 267
Query: 97 NIPKPSYFNRWINLRVPFS-------KGDVRC---NLKEAVELGWHGRVHCGLDDSMNIA 146
NI P F +IN++ F KG+ + N+ E ++L + G H GLDD+ NIA
Sbjct: 268 NIRMPHMFRSFINIKKTFKEKFNGLIKGNGKSGIENMLERLDLSFVGNKHSGLDDATNIA 327
Query: 147 RLLAVIMQRGFKFSITK 163
+ +M+ + I +
Sbjct: 328 AIAIQMMKLKIELRINQ 344
>gi|360043282|emb|CCD78695.1| putative 3-5 exonuclease eri1 [Schistosoma mansoni]
Length = 562
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 47/201 (23%)
Query: 12 FDYFVVVDFEATCDKK------IPHPQEIIEFPSVIVSGVTGQITVCFQIY--------- 56
+DY +++D EATC+ K +P EIIEFP ++ S + F Y
Sbjct: 291 YDYLLIIDLEATCESKEKITTDADYPHEIIEFPILLYSTRLRKCVSVFHAYCKPRLHPDL 350
Query: 57 ALFLHDNWQ----QHMGVTPTNFAVVTWSDW----------------DCQVMLES----E 92
+ F D Q Q P + ++ +W DC + +
Sbjct: 351 SEFCTDLTQIQQIQVDNAQPFPYVLLQIEEWLFKRHKLANKRCAIVCDCSADMSKFMRIQ 410
Query: 93 CRFKNIPKPSYFNRWINLRVPF-------SKGDVRCN-LKEAVELGWHGRVHCGLDDSMN 144
CR NI PS+ N WINL F S+ + N + + L + G+ H GLDD++N
Sbjct: 411 CRLSNISMPSWVNIWINLTKSFRAFYKFPSRYRITLNVMLHDLGLSFVGQRHRGLDDAIN 470
Query: 145 IARLLAVIMQRGFKFSITKSL 165
I R++ V++ G + + +
Sbjct: 471 ILRIVRVLLSDGCSLRVNERI 491
>gi|256076258|ref|XP_002574430.1| 3'-5' exonuclease [Schistosoma mansoni]
Length = 576
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 47/201 (23%)
Query: 12 FDYFVVVDFEATCDKK------IPHPQEIIEFPSVIVSGVTGQITVCFQIY--------- 56
+DY +++D EATC+ K +P EIIEFP ++ S + F Y
Sbjct: 291 YDYLLIIDLEATCESKEKITTDADYPHEIIEFPILLYSTRLRKCVSVFHAYCKPRLHPDL 350
Query: 57 ALFLHDNWQ----QHMGVTPTNFAVVTWSDW----------------DCQVMLES----E 92
+ F D Q Q P + ++ +W DC + +
Sbjct: 351 SEFCTDLTQIQQIQVDNAQPFPYVLLQIEEWLFKRHKLANKRCAIVCDCSADMSKFMRIQ 410
Query: 93 CRFKNIPKPSYFNRWINLRVPF-------SKGDVRCN-LKEAVELGWHGRVHCGLDDSMN 144
CR NI PS+ N WINL F S+ + N + + L + G+ H GLDD++N
Sbjct: 411 CRLSNISMPSWVNIWINLTKSFRAFYKFPSRYRITLNVMLHDLGLSFVGQRHRGLDDAIN 470
Query: 145 IARLLAVIMQRGFKFSITKSL 165
I R++ V++ G + + +
Sbjct: 471 ILRIVRVLLSDGCSLRVNERI 491
>gi|340052991|emb|CCC47277.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 434
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 92/210 (43%), Gaps = 47/210 (22%)
Query: 1 PNPFLPQKLQDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQITV--CFQIYA 57
PNP Q FD+ +VVD EATC++K +P EIIE P V+V G I F+ Y
Sbjct: 112 PNPL---DRQIFDFLIVVDVEATCERKNDNYPHEIIELPGVLVDVRRGVIDKGRSFRSYV 168
Query: 58 L-----FLHDNWQQHMGVT-------------------------PTNFAVVTWSD--WDC 85
L D + G+T P VV +D WD
Sbjct: 169 RPIINPILTDFCKSLTGITQENVDGAPVLQDVVKLFEEWYRRTIPAGAKVVFATDGPWDL 228
Query: 86 Q-VMLESECRFKNIPKPSYFNRWINLRVPFS----KGDV--RCNLKEAVELGWHGRVHCG 138
+ + E ++ PS F ++++R F+ KG + ++ + L + GR H G
Sbjct: 229 KNFVYEHSIMRDHVRFPSIFYEYVDIRTTFANYFNKGKLIKLEDMLHRMNLQFEGRPHSG 288
Query: 139 LDDSMNIARLLAVIMQRG--FKFSITKSLT 166
DDS+NIARL +M+ G F + ++ LT
Sbjct: 289 FDDSVNIARLALSMMKAGCVFNYLVSIPLT 318
>gi|434398749|ref|YP_007132753.1| Exonuclease RNase T and DNA polymerase III [Stanieria cyanosphaera
PCC 7437]
gi|428269846|gb|AFZ35787.1| Exonuclease RNase T and DNA polymerase III [Stanieria cyanosphaera
PCC 7437]
Length = 189
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 39/184 (21%)
Query: 9 LQDFDYFVVVDFEATC--DKKIP-HPQEIIEFPSVIVSGVTGQITVCFQIYALFLHD--- 62
L+++ YF++VD EATC K IP H EIIE +VI+ I FQ + +
Sbjct: 4 LENYQYFLIVDLEATCCDRKTIPRHQMEIIEIGAVIIEAKELNIISEFQTFIKPIRHPIL 63
Query: 63 -------------------NWQQHMGV------TPTNFAVVTWSDWDCQVMLESECRFKN 97
N+ Q + V +NF +W D+D + E +C+F
Sbjct: 64 TNFCQQLTSITQKQIDSALNYSQAIAVFKEWLYAYSNFIFGSWGDYD-RKQFEQDCQFHQ 122
Query: 98 IPKPSYFNRWINLRVPFSKGD---VRCNLKEAVELG---WHGRVHCGLDDSMNIARLLAV 151
+ P ++ INL+ FS +K+A++L G H G+DD+ NIA+L+
Sbjct: 123 VAYP-IASKHINLKKLFSTNQELKSTYGMKQALQLAKIELEGTHHRGIDDARNIAKLMPY 181
Query: 152 IMQR 155
I+ R
Sbjct: 182 ILAR 185
>gi|440804101|gb|ELR24980.1| Znfinger in Ran binding protein [Acanthamoeba castellanii str.
Neff]
Length = 732
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 46/211 (21%)
Query: 10 QDFDYFVVVDFEATCD-----KKIPHPQEIIEFPSVIVSGVTGQITVCFQIY-------- 56
++DY VV+DFEATCD K QEIIEFP V++ V Q+ QIY
Sbjct: 7 HEYDYLVVIDFEATCDEGEQPKVTRENQEIIEFPWVVIDLVNQQVIDKRQIYVRPEWTSQ 66
Query: 57 ------------------ALFLHDNWQQH-------MGVTPTNFAVVTWSDWDCQVMLES 91
A LH+ Q F ++T DWD ++ L
Sbjct: 67 LTPFCVKLTGITDDKLREAPLLHEAMAQFDRYVDDCFARRGKTFCILTDGDWDLKMCLLQ 126
Query: 92 ECRFKNIPKPSYFNRWINLRVPFSK--------GDVRCNLKEAVELGWHGRVHCGLDDSM 143
E R K+I + ++ + +++ F K + + L GR H GL D +
Sbjct: 127 ETRKKDIARAPHYMTYFDVKEEFLKVFPQPSHYKPSLMTMLRHLNLVMEGRHHSGLYDCV 186
Query: 144 NIARLLAVIMQRGFKFSITKSLTTPQDITQD 174
NI+ ++ +++ G F + + D + D
Sbjct: 187 NISNIVLELIRHGHYFGQPQVIPPDYDPSTD 217
>gi|297298942|ref|XP_002805307.1| PREDICTED: 3'-5' exoribonuclease 1-like [Macaca mulatta]
Length = 340
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 71 TPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLR--------VPFSKGDVRCN 122
T ++++T WD L +C+ + P + +WIN+R VP S+ +
Sbjct: 212 TKYKYSILTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIM 271
Query: 123 LKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
L E + + + GR HCGLDDS NIAR+ ++Q G + I + + Q ++ S +
Sbjct: 272 L-EKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKIHAGQLMSVSSSL 325
>gi|340058722|emb|CCC53082.1| putative phosphotransferase [Trypanosoma vivax Y486]
Length = 525
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 77/191 (40%), Gaps = 54/191 (28%)
Query: 12 FDYFVVVDFEATCD--KKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL-----FLHDNW 64
F +VV+DFEATC+ ++IP P EIIEFP VIV +G FQ Y L D
Sbjct: 24 FHAYVVLDFEATCERGRRIPDP-EIIEFPMVIVDSESGASIAEFQRYVQPVLKPRLSDFC 82
Query: 65 QQHMGVTPT-------------------------------NFAVVTWSDWDCQVMLESEC 93
+ G+T +F VT DWD Q ML +
Sbjct: 83 TELTGITQATVNAAQTFPFVFREALEFLHSHGFGDEAPYKSFLFVTCGDWDLQTMLPIQL 142
Query: 94 RFK-----NIPKPSYFNRWINLR------VPFSKGDVRC----NLKEAVELGWHGRVHCG 138
R ++ P F RW N++ +P + R ++ L GR H G
Sbjct: 143 RISAEYGTSLQPPPSFYRWCNIKKLMQRLLPSACASRRIRDIPDMLAVYNLELRGRHHSG 202
Query: 139 LDDSMNIARLL 149
+DD NIA +L
Sbjct: 203 IDDCRNIATVL 213
>gi|308456231|ref|XP_003090574.1| CRE-ERI-1 protein [Caenorhabditis remanei]
gi|308262483|gb|EFP06436.1| CRE-ERI-1 protein [Caenorhabditis remanei]
Length = 584
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 83/213 (38%), Gaps = 61/213 (28%)
Query: 12 FDYFVVVDFEATCDKKI-PHPQEIIEFPSVIVSGVTGQITVCFQIY-------------- 56
FDY + DFE TC + I +P EIIE P+V++ +I F+ Y
Sbjct: 143 FDYLIAADFECTCVEVIYDYPHEIIELPAVLIDVREMKIVSEFRSYVRPVKNPKLSEFCI 202
Query: 57 ----------------------------------ALFLHDNWQQHMGVTPTN--FAVVTW 80
AL W +H G+ N FA VT
Sbjct: 203 QFTSRWPPLLVPSLIDFLPEIAQETVDEAPYFREALDRLIQWMRHFGLGEKNTRFAFVTD 262
Query: 81 SDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-------KGDVRC---NLKEAVELG 130
D ++ +C NI P F +IN++ F KG+ + N+ E +EL
Sbjct: 263 GPHDMWKFMQFQCLLSNIRMPHMFRNFINIKKTFKEKFNGLVKGNGKSGIENMLERLELS 322
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITK 163
+ G H GLDD+ NIA++ +M+ + I +
Sbjct: 323 FIGNKHSGLDDARNIAQIAIQMMKLKIELRINQ 355
>gi|260801283|ref|XP_002595525.1| hypothetical protein BRAFLDRAFT_69069 [Branchiostoma floridae]
gi|229280772|gb|EEN51537.1| hypothetical protein BRAFLDRAFT_69069 [Branchiostoma floridae]
Length = 222
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 45/187 (24%)
Query: 14 YFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQIT-----VCFQIYALFLHD---- 62
Y+ VVDFEATC K + EIIEF +VIV G Q+ C + LH
Sbjct: 9 YYCVVDFEATCIKPRRADFRTEIIEFGAVIVDGSNFQMADEFHEFCRPVENPVLHQFCKE 68
Query: 63 -----------------------NWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIP 99
W + G+ +NFA+VT +DC ++ S+C +
Sbjct: 69 LTGIQQDTVDSADPFPVVFDRFQKWLSNRGLIDSNFALVTDGIFDCNQIMRSQCEVSQMS 128
Query: 100 KPSYFNRWINLRVPFSK-GDVRC----------NLKEAVELGWHGRVHCGLDDSMNIARL 148
PS+ R+ N+++ + + +R ++ A+ + G++H + D+ NI R+
Sbjct: 129 FPSFARRFSNIKIHYMQFMGIRLRRGQPTPRIPDMLRALGISQEGQLHSAISDARNICRI 188
Query: 149 LAVIMQR 155
+ + +R
Sbjct: 189 MEALSRR 195
>gi|342185674|emb|CCC95159.1| putative phosphotransferase [Trypanosoma congolense IL3000]
Length = 582
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 60/221 (27%)
Query: 7 QKLQDFDYFVVVDFEATCD--KKIPHPQEIIEFPSVIVSGVTGQITVCFQ---------- 54
Q+ FD +V++DFEATC+ K+I P E+IEFP +++ +TG+ FQ
Sbjct: 70 QRQSPFDVYVILDFEATCERGKRICVP-EVIEFPMILLDALTGRTIAEFQQYVRPVVNPR 128
Query: 55 ------------------------IYALFLHDNWQQHMGVTPTN--FAVVTWSDWDCQVM 88
+++ ++ Q G TP++ +T+ DWD + M
Sbjct: 129 LSDFCTELVGIRQETVDKADTFPSVFSSAMNFLQQNGCGDTPSSKRHLFITFGDWDLKTM 188
Query: 89 LESECRF-----KNIPKPSYFNRWINLRVPFS----KGDVRCNLK---------EAVELG 130
L + + +I P + RW N++ +G + L+ + L
Sbjct: 189 LPLQLQACCDQGVSICVPPFLRRWCNIKRLMQQMLFQGVWQAGLRFIRDIPDMMNILSLE 248
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT---KSLTTP 168
GR H G+DD NIA +A ++Q G+ F+ T LT P
Sbjct: 249 MQGRHHSGIDDCRNIAAAVAKLIQAGYVFAPTTDNSGLTPP 289
>gi|261327261|emb|CBH10237.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 762
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 42/189 (22%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
FDY +VVDFEATC++ P + EIIEFP V+V ++ F Y
Sbjct: 552 FDYLLVVDFEATCEEYAPPSYLHEIIEFPVVVVDAKLQRVITEFHRYVKPKVKPQLSEFC 611
Query: 57 -------------ALFLHDNWQQ----HMGVTPTNFAVVTWSDWDCQV---MLESECRFK 96
A L D +Q + P V +D + M +
Sbjct: 612 RQLTGIRQEDIDSAAPLEDVIKQFERWYAQTIPPGSRTVLVTDGPADLREFMYVHSVTRQ 671
Query: 97 NIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLA 150
I PS F +WI+++ F+ +G ++ L E ++ + GR+H G+DD+ NIA+++
Sbjct: 672 GIRFPSMFYQWIDVKQVFAHFFQCQQGKIKAML-EVLQCPFEGRLHSGIDDARNIAKIVI 730
Query: 151 VIMQRGFKF 159
+++ G F
Sbjct: 731 RMLEVGCSF 739
>gi|72387359|ref|XP_844104.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62360612|gb|AAX81023.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70800636|gb|AAZ10545.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 762
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 42/189 (22%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
FDY +VVDFEATC++ P + EIIEFP V+V ++ F Y
Sbjct: 552 FDYLLVVDFEATCEEYAPPSYLHEIIEFPVVVVDAKLQRVITEFHRYVKPKVKPQLSEFC 611
Query: 57 -------------ALFLHDNWQQ----HMGVTPTNFAVVTWSDWDCQV---MLESECRFK 96
A L D +Q + P V +D + M +
Sbjct: 612 RQLTGIRQEDIDSAAPLEDVIKQFERWYAQTIPPGSRTVLVTDGPADLREFMYVHSVTRQ 671
Query: 97 NIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLA 150
I PS F +WI+++ F+ +G ++ L E ++ + GR+H G+DD+ NIA+++
Sbjct: 672 GIRFPSMFYQWIDVKQVFAHFFQCQQGKIKAML-EVLQCPFEGRLHSGIDDARNIAKIVI 730
Query: 151 VIMQRGFKF 159
+++ G F
Sbjct: 731 RMLEVGCSF 739
>gi|342180403|emb|CCC89880.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 760
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 45/200 (22%)
Query: 1 PNPFLPQKLQDFDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIY-- 56
P P LP FDY +VVDFEATC++ P + EIIEFP V+V ++ F Y
Sbjct: 541 PMPHLPCP---FDYILVVDFEATCEENAPPSYLHEIIEFPVVVVDVKLQRVITEFHRYVR 597
Query: 57 ------------------------ALFLHDNWQQ----HMGVTPTNFAVVTWSDWDCQV- 87
A L D +Q + P VV +D +
Sbjct: 598 PKFKSQLSDFCRALTGIQQDDIDSASLLEDVIKQFERWYAQTIPPGSRVVLATDGPADMR 657
Query: 88 --MLESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGL 139
M + I P+ F +WI+++ F+ +G ++ L E + + GR+H G+
Sbjct: 658 EFMYVHSVTRQGIRFPNLFYQWIDVKQIFAHFFQCQQGKIKAML-EVLHCPFEGRLHSGI 716
Query: 140 DDSMNIARLLAVIMQRGFKF 159
DD+ NIA+++ +++ G F
Sbjct: 717 DDARNIAKIVIRMLEVGCSF 736
>gi|291000550|ref|XP_002682842.1| predicted protein [Naegleria gruberi]
gi|284096470|gb|EFC50098.1| predicted protein [Naegleria gruberi]
Length = 202
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 53/203 (26%)
Query: 12 FDYFVVVDFEAT----CDKKIPHPQEIIEFPSVIV------------------------- 42
F Y V+DFEA C + EIIEFPSV++
Sbjct: 1 FKYICVLDFEAVFADDCKTNRNYDMEIIEFPSVLLKFESEKQLVVVDEIQNYVKTRRIPK 60
Query: 43 --------SGVTGQIT---VCFQIYALFLHDNW-QQHMGVTPT--NFAVVTWSDWDCQVM 88
+G+T ++ V F+ AL H+ W H+G PT N + T DWD + M
Sbjct: 61 INEECTKLTGITQEMVESGVSFE-EALKRHNEWLMSHLGEKPTKDNILMATCGDWDLKTM 119
Query: 89 LESECRFKNIPKP---SYFNRWINLRVPFSK------GDVRCNLKEAVELGWHGRVHCGL 139
+ + F+ S+F +W N++ F+K + + A++L G+ H G+
Sbjct: 120 IPHQVFFEKQTISLIGSHFTQWCNVKDVFAKFYNMEKVNGMLTMLNALKLPLLGKHHSGI 179
Query: 140 DDSMNIARLLAVIMQRGFKFSIT 162
DD NIAR++ + Q+G F+ T
Sbjct: 180 DDCKNIARVVCKMAQQGCHFNAT 202
>gi|403364890|gb|EJY82220.1| Phosphotransferase [Oxytricha trifallax]
Length = 460
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 82/218 (37%), Gaps = 57/218 (26%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIY------------- 56
FDY V DFE C++ + EIIEFP VI+ ++ FQ Y
Sbjct: 232 FDYICVYDFECQCEEGTKNLTFNEIIEFPVVIIDVKAQKVVAEFQTYVKPTLHPELTEFC 291
Query: 57 -------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKN 97
A+ L + GV + F ++ D+D M E K
Sbjct: 292 TKLTGIEQKQVDEGVTIKEAIQLVHEFLGKNGVLESEFVFLSCGDFDGNQM-RREALHKG 350
Query: 98 IPKPSYFNRWINLRVPFSK---------------GDVRCN-------LKEAVELGWHGRV 135
P+Y RWIN++ F K DV+ + + E L GR
Sbjct: 351 FDVPNYLKRWINIKKVFPKHLFDEKAAKNEVIFVKDVKKSAVSGMPHMLELCGLELEGRH 410
Query: 136 HCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQ 173
H G+DD NIAR +Q GF+F+ L+ P I +
Sbjct: 411 HSGIDDCKNIARCAIKCLQEGFQFTQGMVLSHPFSIDE 448
>gi|392571225|gb|EIW64397.1| exonuclease RNase T and DNA polymerase III [Trametes versicolor
FP-101664 SS1]
Length = 215
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 57/200 (28%)
Query: 14 YFVVVDFEATCD---KKIPHPQ-EIIEFPSVIVSGVTGQITVCFQIYAL-FLH------- 61
Y +V+DFEATCD + +P + E+IEFP+++ ++ F Y LH
Sbjct: 6 YLLVLDFEATCDNTNRIVPRQEMEVIEFPTILYDIEQDKVEAVFHEYVRPTLHPTLTPFC 65
Query: 62 ------------------DNWQQHM------GV--TPTNFAVVTWSDWDCQVMLESECRF 95
D W+++ GV +P++ +T DWD + ML + R
Sbjct: 66 TDLTGIQQATVDSAAPFPDVWERYQEFLRTHGVVDSPSSAIYLTCGDWDLKTMLPMQLRL 125
Query: 96 KNIPKPSY---------FNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCG 138
+ + S ++RWIN++ + + KG +EL GR H G
Sbjct: 126 SKLLESSSTPSGTLVAPYDRWINIKNSYRRFHDLKYPKGMASMLTHAKMEL--EGRHHSG 183
Query: 139 LDDSMNIARLLAVIMQRGFK 158
+DD NI RL+ + Q G+K
Sbjct: 184 IDDCKNILRLVQRMRQDGWK 203
>gi|357145920|ref|XP_003573813.1| PREDICTED: uncharacterized exonuclease domain-containing protein
At3g15140-like [Brachypodium distachyon]
Length = 337
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 79/206 (38%), Gaps = 60/206 (29%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA-------- 57
PQKL DYF+V+D E EI+EFP V++ + + F +
Sbjct: 124 PQKL---DYFLVLDLEGKV--------EILEFPVVMIDAHSMEFVDSFHRFVRPTAMSEQ 172
Query: 58 ------------------------------------LFLHDNWQQHMGVTPTNFAVVTWS 81
+ H+ W+Q G + + A +T
Sbjct: 173 RIREYIDGKYGKFGVDRVWHDTAIPFGEVLQEFEDWIGGHELWKQKQGESLNSAAFITCG 232
Query: 82 DWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGWHGRVH 136
+WD + + +C+ + PSYF WINL+ + + + +++ G H
Sbjct: 233 NWDLKTKVPEQCKVSKLKLPSYFMEWINLKDIYLNFYNRRATGMMTMMRELQIPTVGSHH 292
Query: 137 CGLDDSMNIARLLAVIMQRGFKFSIT 162
G+DD+ NIAR++ ++ G IT
Sbjct: 293 LGIDDAKNIARIVQRMLADGAMIQIT 318
>gi|340052992|emb|CCC47278.1| conserved hypothetical protein, fragment, partial [Trypanosoma
vivax Y486]
Length = 746
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 42/189 (22%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
FDY +VVDFEATC++ P + EIIEFP V+V + F Y
Sbjct: 529 FDYLLVVDFEATCEEHPPPSYLHEIIEFPVVVVDTKLKRAVAEFHRYVRPKVQPKLSEFC 588
Query: 58 LFLHDNWQQHM-GVTPTNFAVVTWSDW-------DCQVMLESE-------------CRFK 96
L L Q+ + P + + W C+ +L ++ +
Sbjct: 589 LRLTGIRQEDIDNAAPLEEVIRQFERWYAQTIPPGCRAVLATDGPTDMREFMYVHSVSRQ 648
Query: 97 NIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLA 150
I PS F +WI+++ F+ +G ++ L E + + GR+H G+DD+ NIA ++
Sbjct: 649 GIRFPSMFYQWIDVKQAFANFFQCQQGKIKAML-EVLHCPFEGRLHSGMDDAKNIANIVI 707
Query: 151 VIMQRGFKF 159
++Q G F
Sbjct: 708 RMLQVGCSF 716
>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata]
gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata]
Length = 1134
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 57/205 (27%)
Query: 7 QKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA--------- 57
+K Q+F++F+V+D E EI+EFP +IV T ++ F +
Sbjct: 118 KKSQEFNFFLVIDLEGKV--------EILEFPVLIVDAKTMEVVDLFHRFVRPTKMSEQA 169
Query: 58 -----------------------------------LFLHDNWQQHMGVTPTNFAVVTWSD 82
L HD W + + A +T +
Sbjct: 170 INKYIEGKYGEVGVDRVWHDTAIPFKQVVEEFEAWLAEHDLWTKDTDGALNDAAFITCGN 229
Query: 83 WDCQVMLESECRFKNIPKPSYFNRWINLR---VPFSKGDVRCNLKEAVELG--WHGRVHC 137
WD + + +C NI P YF WINL+ + F + R + + G G H
Sbjct: 230 WDIKTKIPEQCVVSNINLPPYFTEWINLKDIYLNFYGREARGMVSMMRQCGIKLMGSHHL 289
Query: 138 GLDDSMNIARLLAVIMQRGFKFSIT 162
G+DD+ NI R++ ++ G IT
Sbjct: 290 GIDDTKNITRVVQRMLSEGAVLKIT 314
>gi|222641267|gb|EEE69399.1| hypothetical protein OsJ_28756 [Oryza sativa Japonica Group]
Length = 335
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 75/204 (36%), Gaps = 57/204 (27%)
Query: 8 KLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA---------- 57
K Q DYF+V+D E EI+EFP V++ + + F +
Sbjct: 121 KSQKLDYFLVLDLEGKV--------EILEFPVVMIDAQSMEFVDSFHRFVHPTAMSEQRI 172
Query: 58 ----------------------------------LFLHDNWQQHMGVTPTNFAVVTWSDW 83
+ H W++ G + A +T +W
Sbjct: 173 REYIEGKYGKFGVDRVWHDTAIPFMEVLQEFEDWIEHHKFWKKEQGGALNSAAFITCGNW 232
Query: 84 DCQVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGWHGRVHCG 138
D + + +CR I PSYF WINL+ + + + +++ G H G
Sbjct: 233 DLKTKVPEQCRVSKIKLPSYFMEWINLKDIYLNFYNRRATGMMTMMRELQMPIVGSHHLG 292
Query: 139 LDDSMNIARLLAVIMQRGFKFSIT 162
+DD+ NIAR++ ++ G IT
Sbjct: 293 IDDAKNIARVVQRMLADGAVMQIT 316
>gi|118366139|ref|XP_001016288.1| exonuclease family protein [Tetrahymena thermophila]
gi|89298055|gb|EAR96043.1| exonuclease family protein [Tetrahymena thermophila SB210]
Length = 559
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 76/188 (40%), Gaps = 39/188 (20%)
Query: 12 FDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------L 58
+Y V+DFE TCD+ K QEIIEFP V++ +I F +
Sbjct: 58 LEYLFVIDFECTCDEEKRLKIQEIIEFPIVVIDLRKKEIIDRFHSFVRPTQYPILTPFCT 117
Query: 59 FLHDNWQQHMGVTPT---------------------NFAVVTWSDWDCQVMLESECRFKN 97
L Q+ + PT +V+ D D + L E FK
Sbjct: 118 KLTGITQEQVDSAPTLPEVLKEVDRFLEKYIKDGLQKVSVLNDCDSDIRNFLRKETTFKG 177
Query: 98 IPKPSYFNRWINLR--VPFSKGDVRCNLKEA---VELGWHGRVHCGLDDSMNIARLLAVI 152
IP F +I+LR P + N+ V L + G HCGLDD+ NIAR+ I
Sbjct: 178 IPVKPVFKEFIDLRRIFPVKISEKPTNIDHMLSCVGLTFEGVKHCGLDDATNIARVALEI 237
Query: 153 MQRGFKFS 160
+R + ++
Sbjct: 238 AKRDYIYT 245
>gi|218198144|gb|EEC80571.1| hypothetical protein OsI_22899 [Oryza sativa Indica Group]
Length = 335
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 75/204 (36%), Gaps = 57/204 (27%)
Query: 8 KLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA---------- 57
K Q DYF+V+D E EI+EFP V++ + + F +
Sbjct: 121 KSQKLDYFLVLDLEGKV--------EILEFPVVMIDAQSMEFVDSFHRFVHPTVMSEQRI 172
Query: 58 ----------------------------------LFLHDNWQQHMGVTPTNFAVVTWSDW 83
+ H W++ G + A +T +W
Sbjct: 173 REYIEGKYGKFGVDRVWHDTAIPFMEVLQEFEDWIEHHKFWKKEQGGALNSAAFITCGNW 232
Query: 84 DCQVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGWHGRVHCG 138
D + + +CR I PSYF WINL+ + + + +++ G H G
Sbjct: 233 DLKTKVPEQCRVSKIKLPSYFMEWINLKDIYLNFYSRRATGMMTMMRELQMPIVGSHHLG 292
Query: 139 LDDSMNIARLLAVIMQRGFKFSIT 162
+DD+ NIAR++ ++ G IT
Sbjct: 293 IDDAKNIARVVQRMLADGAVMQIT 316
>gi|350535268|ref|NP_001232995.1| uncharacterized protein LOC100162389 [Acyrthosiphon pisum]
gi|239793057|dbj|BAH72792.1| ACYPI003543 [Acyrthosiphon pisum]
Length = 248
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 46/208 (22%)
Query: 6 PQKLQDFDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTG----QITVCFQIYA-- 57
P Q + F V+DFEATCD + PQEIIEFP ++V ++ F Y
Sbjct: 40 PNMSQPYTKFFVLDFEATCDNGAHLLKPQEIIEFPCILVKFNMAKGGFEVVSIFHSYVKP 99
Query: 58 ------------------------------LFLHDNWQQ-HMGVTPTNFAVVTWSDWDCQ 86
F NW H + +VT +WD
Sbjct: 100 IIHTVLTEYCTQLTGVTQDMVSNSPPFDDVFFNFCNWHNDHTNMGKEKSIIVTSGNWDIG 159
Query: 87 VMLESECRF--KNIPKPSYFNRWINLRVPF--SKGDVRCNLKEAVELG---WHGRVHCGL 139
M +C+ I P + WIN++ F + G+ +K ++ G +H G+
Sbjct: 160 NMFIEQCKLFPSTIKIPEFMCTWINIKKLFALTMGEYPLGIKSMLKTTNSKQFGNIHSGI 219
Query: 140 DDSMNIARLLAVIMQRGFKFSITKSLTT 167
DD +NI ++ + QRG F T + +
Sbjct: 220 DDCVNIITIMNQLSQRGCVFQATNKIIS 247
>gi|356517082|ref|XP_003527219.1| PREDICTED: uncharacterized exonuclease domain-containing protein
At3g15140-like [Glycine max]
Length = 299
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 76/202 (37%), Gaps = 60/202 (29%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
QD D+F+V+D E EI+EFP +++S T Q+ F +
Sbjct: 89 QDLDFFLVLDLEGRV--------EILEFPVLMISAKTLQVEDIFHRFVRPSKMSERRINE 140
Query: 58 --------------------------------LFLHDNWQQHMGVTPTNFAVVTWSDWDC 85
L H W MG A VT +WD
Sbjct: 141 YVEGKYGKFGVHRVWHDTAIPFTDVIQQFGTWLMRHQLW---MGEKLIRAAFVTCGNWDL 197
Query: 86 QVMLESECRFKNIPKPSYFNRWINLR-VPFSKGDVRC----NLKEAVELGWHGRVHCGLD 140
+ + +C I P YF WINL+ V + D R + + +++ G H G+D
Sbjct: 198 KTKVPQQCEVSKIELPPYFMEWINLKDVYLNFYDRRATGMVTMMKELQIPMVGSHHLGID 257
Query: 141 DSMNIARLLAVIMQRGFKFSIT 162
D+ NIAR+L ++ G IT
Sbjct: 258 DTRNIARVLQHMLLDGALVQIT 279
>gi|224115354|ref|XP_002317011.1| predicted protein [Populus trichocarpa]
gi|222860076|gb|EEE97623.1| predicted protein [Populus trichocarpa]
Length = 261
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 77/210 (36%), Gaps = 59/210 (28%)
Query: 4 FLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------ 57
F ++ QDFD+F+V D E EI+EFP +I+ T + F +
Sbjct: 41 FERKRPQDFDFFLVFDLEGKV--------EILEFPVLIIDAKTMGVVDLFHRFVRPTAMS 92
Query: 58 --------------------------------------LFLHDNWQQHMGVTPTNFAVVT 79
L H+ W++ G A VT
Sbjct: 93 EERVNEYIYNKYGKFGVDRVWHDTALPFNEVLQQFESWLTQHNLWEKTRGGRLNRAAFVT 152
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLR-------VPFSKGDVRCNLKEAVELGWH 132
+WD + + +C + P YF WINL+ P ++ + +++
Sbjct: 153 CGNWDVKTQVPHQCSVSKLKLPPYFMEWINLKDVYQNFYNPRNEARGMRTMMSQLKIPMV 212
Query: 133 GRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
G H GLDD+ NIAR+L ++ G IT
Sbjct: 213 GSHHLGLDDTKNIARVLLRMLADGAVLPIT 242
>gi|194376910|dbj|BAG63016.1| unnamed protein product [Homo sapiens]
Length = 136
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 71 TPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLR--------VPFSKGDVRCN 122
T ++++ WD L +C+ + P + +WIN+R VP S+ +
Sbjct: 8 TKYKYSLLPDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIM 67
Query: 123 LKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
L E + + + GR HCGLDDS NIAR+ ++Q G + I + + Q ++ S +
Sbjct: 68 L-EKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSL 121
>gi|225461547|ref|XP_002282697.1| PREDICTED: uncharacterized exonuclease domain-containing protein
At3g15140 [Vitis vinifera]
Length = 319
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 59/213 (27%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q D+F+V+D E EI+EFP ++++ T + F +
Sbjct: 106 QHLDFFLVLDLEGKI--------EILEFPVLMINAKTMDVVDLFHRFVRPSEMSEQRINE 157
Query: 58 --------------------------------LFLHDNWQQHMGVTPTNFAVVTWSDWDC 85
L H W + MG A VT +WD
Sbjct: 158 YIEGKYGKLGVDRVWHDTSIPFKEVIQQFEAWLTQHHLWTKEMGGRLDQAAFVTCGNWDL 217
Query: 86 QVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGWHGRVHCGLD 140
+ + +C+ + P YF WINL+ + + + + +++ G H G+D
Sbjct: 218 KTKVPQQCKVSKMKLPPYFMEWINLKDVYLNFYKRRATGMMTMMKELQIPLLGSHHLGID 277
Query: 141 DSMNIARLLAVIMQRGFKFSIT--KSLTTPQDI 171
D+ NIAR+L ++ G IT ++ +P+++
Sbjct: 278 DTKNIARVLQRMLADGALLQITARRNADSPENV 310
>gi|226481595|emb|CAX73695.1| three prime histone mRNA exonuclease 1 [Schistosoma japonicum]
Length = 582
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 47/201 (23%)
Query: 12 FDYFVVVDFEATCDKK------IPHPQEIIEFPSVIVSGVTGQITVCFQIYAL-FLHDNW 64
+DY +++D EATC+ K I +P EIIEFP ++ + + F Y LH N
Sbjct: 298 YDYLLIIDLEATCESKEKIINDIDYPHEIIEFPILLYNTRLRKCVSVFHAYCKPRLHPNL 357
Query: 65 Q------------QHMGVTPTNFAVVTWSDW--------------------DCQVMLESE 92
Q P + ++ +W D + +
Sbjct: 358 SEFCTDLTQIQQIQVDNALPFSNVLLQVEEWLLKRHKLTQKRCAIVCDCCADMSKFMRIQ 417
Query: 93 CRFKNIPKPSYFNRWINLRVPF-------SKGDVRCN-LKEAVELGWHGRVHCGLDDSMN 144
CR NI P++ WINL F S+ V N + + L + G+ H GLDD++N
Sbjct: 418 CRLANISLPNWCKIWINLSKSFRAFYKFPSRYRVTLNGMLHDLGLSFVGQRHRGLDDAVN 477
Query: 145 IARLLAVIMQRGFKFSITKSL 165
I R++ V++ G + + +
Sbjct: 478 ILRIVRVLLSDGCSLRVNERI 498
>gi|226481597|emb|CAX73696.1| three prime histone mRNA exonuclease 1 [Schistosoma japonicum]
Length = 582
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 47/201 (23%)
Query: 12 FDYFVVVDFEATCDKK------IPHPQEIIEFPSVIVSGVTGQITVCFQIYAL-FLHDNW 64
+DY +++D EATC+ K I +P EIIEFP ++ + + F Y LH N
Sbjct: 298 YDYLLIIDLEATCESKEKIINDIDYPHEIIEFPILLYNTRLRKCVSVFHAYCKPRLHPNL 357
Query: 65 Q------------QHMGVTPTNFAVVTWSDW--------------------DCQVMLESE 92
Q P + ++ +W D + +
Sbjct: 358 SEFCTDLTQIQQIQVDNALPFSNVLLQVEEWLLKRHKLTQKRCAIVCDCCADMSKFMRIQ 417
Query: 93 CRFKNIPKPSYFNRWINLRVPF-------SKGDVRCN-LKEAVELGWHGRVHCGLDDSMN 144
CR NI P++ WINL F S+ V N + + L + G+ H GLDD++N
Sbjct: 418 CRLANISLPNWCKIWINLSKSFRAFYKFPSRYRVTLNGMLHDLGLSFVGQRHRGLDDAVN 477
Query: 145 IARLLAVIMQRGFKFSITKSL 165
I R++ V++ G + + +
Sbjct: 478 ILRIVRVLLSDGCSLRVNERI 498
>gi|440793448|gb|ELR14631.1| exonuclease, putative [Acanthamoeba castellanii str. Neff]
Length = 927
Score = 60.1 bits (144), Expect = 9e-07, Method: Composition-based stats.
Identities = 56/217 (25%), Positives = 87/217 (40%), Gaps = 64/217 (29%)
Query: 12 FDYFVVVDFEATCDKKIPHP--------------QEIIEFPSVIV--------------- 42
+ Y VV+D EATC++ + +P EIIEFP +V
Sbjct: 10 YRYVVVLDLEATCEE-VRNPSSSGAGDGTENRLHHEIIEFPWAVVDLKEAKVIEQRQLYV 68
Query: 43 -----------------SGVT-------GQ-ITVCFQIYALFLHDNWQQHMGVTPTNFAV 77
+G+T GQ + C I+A +HD QQ GV V
Sbjct: 69 KPEWEENRHLSAFCTKLTGITDAVLAEQGQPLKQCIAIFAQAMHDLQQQDGGVDKDLICV 128
Query: 78 VTWSDWDCQVMLESECRFKNIPKPSYFNRWINLR-------VPFSKGDVRC--NLKEAVE 128
T DWD V L E K + P + R+IN+R P + ++ +L +
Sbjct: 129 ATDGDWDLDVQLRGEAAAKGLDVPYHLQRFINVREEVSYFYKPGREHHIKGLKSLLRYLG 188
Query: 129 LGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
L GR H G+DD +NI +++ + G F+ +++
Sbjct: 189 LPHQGRHHSGIDDVLNICQIVLRLAADGHAFTPERAV 225
>gi|358333145|dbj|GAA37315.2| 3'-5' exoribonuclease 1 [Clonorchis sinensis]
Length = 643
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 47/203 (23%)
Query: 1 PNPFLPQKLQDFDYFVVVDFEATCD-----KKIP-HPQEIIEFPSVIVSGVTGQITVCFQ 54
P P + + Y +++D EATCD + P +P EIIEFP ++ + T + F
Sbjct: 349 PKPVVLTPDTFYSYLLIIDLEATCDFQEHRQSAPEYPHEIIEFPILLYNTRTRKCIGVFH 408
Query: 55 IY--------------------------------ALFLHDNWQ-QHMGVTPTNFAVVTWS 81
Y L ++W G++ AVV
Sbjct: 409 AYCKPKLRPDLTAFCTSLTQISQHEVDNAHPFPHVLARIEDWLFNRHGLSNVRCAVVCDC 468
Query: 82 DWDCQVMLESECRFKNIPKPSYFNRWINL--------RVPFSKGDVRCNLKEAVELGWHG 133
D + +CR IP PS+ WINL ++P + + L + G
Sbjct: 469 GADMGKFMRIQCRLDGIPLPSWATVWINLSKAFRVFYKLPLRNRVTLSTMLRDLNLSFIG 528
Query: 134 RVHCGLDDSMNIARLLAVIMQRG 156
+ H GLDD++NI R++ ++ G
Sbjct: 529 QQHRGLDDAINILRIVRTLLADG 551
>gi|302142955|emb|CBI20250.3| unnamed protein product [Vitis vinifera]
Length = 256
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 59/213 (27%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q D+F+V+D E EI+EFP ++++ T + F +
Sbjct: 43 QHLDFFLVLDLEGKI--------EILEFPVLMINAKTMDVVDLFHRFVRPSEMSEQRINE 94
Query: 58 --------------------------------LFLHDNWQQHMGVTPTNFAVVTWSDWDC 85
L H W + MG A VT +WD
Sbjct: 95 YIEGKYGKLGVDRVWHDTSIPFKEVIQQFEAWLTQHHLWTKEMGGRLDQAAFVTCGNWDL 154
Query: 86 QVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGWHGRVHCGLD 140
+ + +C+ + P YF WINL+ + + + + +++ G H G+D
Sbjct: 155 KTKVPQQCKVSKMKLPPYFMEWINLKDVYLNFYKRRATGMMTMMKELQIPLLGSHHLGID 214
Query: 141 DSMNIARLLAVIMQRGFKFSIT--KSLTTPQDI 171
D+ NIAR+L ++ G IT ++ +P+++
Sbjct: 215 DTKNIARVLQRMLADGALLQITARRNADSPENV 247
>gi|170590708|ref|XP_001900113.1| exonuclease family protein [Brugia malayi]
gi|158592263|gb|EDP30863.1| exonuclease family protein [Brugia malayi]
Length = 399
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 82/208 (39%), Gaps = 53/208 (25%)
Query: 12 FDYFV--------VVDFEATCDKKI-PHPQEIIEFPSVIVSGVTGQITVCFQIYALFLHD 62
+DYFV V+DFE TC+ + + EIIEFP+V+V +I F Y L +
Sbjct: 135 YDYFVMNNYDCSQVIDFECTCEADLYDYNHEIIEFPAVLVDVRKKEIVDVFHSYVRPLAN 194
Query: 63 --------------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVM 88
W Q +G +A VT WD
Sbjct: 195 PQLSEFCSAFTGITQEMIDKALPFIDVLDSFRTWMQLHRLGQNDMRYAFVTDGPWDIAKF 254
Query: 89 LESEC-RFKNIPKPSYFNRWINLRVPFSKGDVRCNLKEAVELG---------WHGRVHCG 138
+ +C + K P F +IN+R F+ + + + LG + GR H G
Sbjct: 255 FQMQCIQSKLNTVPHDFRFYINIRRSFANKYCKKYSMQKINLGGMLTFLNMKFEGREHSG 314
Query: 139 LDDSMNIARLLAVIMQRGFKFSITKSLT 166
LDDS NIAR++ +++ + + + L
Sbjct: 315 LDDSKNIARIVIKMLEDRSELRVNEKLV 342
>gi|401416022|ref|XP_003872506.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488730|emb|CBZ23977.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 405
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 88/225 (39%), Gaps = 54/225 (24%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKI-PHPQEIIEFPSVIVSGVTGQIT-------------- 50
P Q FDY +VVD EATC++ +P E+IE P V++ TGQ+
Sbjct: 67 PLDQQLFDYIIVVDVEATCEQNARSYPHEVIEIPGVLIDVRTGQVDRARSFHTFVKPWRN 126
Query: 51 -----VCFQIY---------------ALFLHDNWQQHMGVTPTNFAVVTWSD--WDCQVM 88
C Q+ A+ L + W + P + +D WD +
Sbjct: 127 PRLTPFCTQLTGITQVVVDAAPSITEAIQLFEKWYRE--TIPRGAKTIFAADGPWDFKNF 184
Query: 89 L-ESECRFKNIPKPSYFNRWINLRVPFSKGDVRCN---------LKEAVELGWHGRVHCG 138
+ E ++ PS F ++++R F+ R N + + L + GR H G
Sbjct: 185 IHEHHILRDHVSFPSIFYEYLDIRTTFAH---RLNHGVPIKLDAMLRKMNLRFDGRPHNG 241
Query: 139 LDDSMNIARLLAVIMQRG--FKFSITKSLTTPQDITQDSVMTWNR 181
DD+ NIARL +M+ G F I L D V + R
Sbjct: 242 FDDAYNIARLAVAMMKAGCVLDFVIAIPLDDAYHYHLDGVPLYRR 286
>gi|320168778|gb|EFW45677.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 234
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 60/215 (27%)
Query: 10 QDFDYFVVVDFEATCDKKI-PHPQEIIEFPSVIV-------------------------- 42
Q F Y +V+DFEA CD+ P PQEIIEFP+V++
Sbjct: 9 QSFRYLLVLDFEAVCDEVTRPKPQEIIEFPTVVLDTTTLEIVGSFHKYVRPVSHPILTPF 68
Query: 43 ----SGVT-----GQITV--CFQIYALFLHDNWQQ-----------------HMGVTPTN 74
+G+T GQ T F + ++ W+ +
Sbjct: 69 CTTLTGITQDMVSGQATFQEVFDEHLAWIQSFWKSLPPAANADADAASTASSSIPSEAPT 128
Query: 75 FAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-KGDVR----CNLKEAVEL 129
+A VT DWD L + P+ + +WIN++ F+ K V + + + L
Sbjct: 129 WAFVTCGDWDLNRALPDQLAALGKKSPAPYRQWINIKKEFAVKYGVSPPGMTAMLDMLRL 188
Query: 130 GWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKS 164
GR H G+DD NIA + +++ G F IT +
Sbjct: 189 DLVGRHHSGIDDCRNIAAVAKEMLRDGHVFEITGT 223
>gi|350586285|ref|XP_003128134.3| PREDICTED: ERI1 exoribonuclease 3-like [Sus scrofa]
Length = 232
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 50/115 (43%), Gaps = 34/115 (29%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 63 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 122
Query: 57 -------------------ALFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLE 90
L D W G+ N VT DWD +VML+
Sbjct: 123 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLQ 177
>gi|325302616|tpg|DAA34168.1| TPA_inf: hypothetical secreted protein 1605 [Amblyomma variegatum]
Length = 151
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 10 QDFDYFVVVDFEATCD--KKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
QDFDYF+V+DFEATC K +P PQEIIEFP + V+G T + F Y
Sbjct: 63 QDFDYFLVLDFEATCSQQKGVPSPQEIIEFPVLKVNGSTFETEATFHTY 111
>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
Length = 1161
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 61/207 (29%)
Query: 7 QKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA--------- 57
+K Q+F++F+V+D E EI+EFP +IV T ++ F +
Sbjct: 121 KKSQEFNFFLVIDLEGKV--------EILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQA 172
Query: 58 -----------------------------------LFLHDNWQQHMGVTPTNFAVVTWSD 82
L HD W + + A VT +
Sbjct: 173 INKYIEGKYGELGVDRVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAFVTCGN 232
Query: 83 WDCQVMLESECRFKNIPKPSYFNRWINLRVPF-------SKGDVRCNLKEAVELGWHGRV 135
WD + + +C NI P YF WINL+ + ++G V + ++L G
Sbjct: 233 WDIKTKIPEQCVVSNINLPPYFMEWINLKDVYLNFYGREARGMVSMMRQCGIKL--MGSH 290
Query: 136 HCGLDDSMNIARLLAVIMQRGFKFSIT 162
H G+DD+ NI R++ ++ G +T
Sbjct: 291 HLGIDDTKNITRVVQRMLSEGAVLKLT 317
>gi|18400647|ref|NP_566502.1| uncharacterized exonuclease domain-containing protein [Arabidopsis
thaliana]
gi|75331425|sp|Q8W566.1|Y3514_ARATH RecName: Full=Uncharacterized exonuclease domain-containing protein
At3g15140
gi|16930517|gb|AAL31944.1|AF419612_1 AT3g15140/F4B12_5 [Arabidopsis thaliana]
gi|19310525|gb|AAL84996.1| AT3g15140/F4B12_5 [Arabidopsis thaliana]
gi|332642103|gb|AEE75624.1| uncharacterized exonuclease domain-containing protein [Arabidopsis
thaliana]
Length = 337
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 61/207 (29%)
Query: 7 QKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA--------- 57
+K Q+F++F+V+D E EI+EFP +IV T ++ F +
Sbjct: 121 KKSQEFNFFLVIDLEGKV--------EILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQA 172
Query: 58 -----------------------------------LFLHDNWQQHMGVTPTNFAVVTWSD 82
L HD W + + A VT +
Sbjct: 173 INKYIEGKYGELGVDRVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAFVTCGN 232
Query: 83 WDCQVMLESECRFKNIPKPSYFNRWINLRVPF-------SKGDVRCNLKEAVELGWHGRV 135
WD + + +C NI P YF WINL+ + ++G V + ++L G
Sbjct: 233 WDIKTKIPEQCVVSNINLPPYFMEWINLKDVYLNFYGREARGMVSMMRQCGIKL--MGSH 290
Query: 136 HCGLDDSMNIARLLAVIMQRGFKFSIT 162
H G+DD+ NI R++ ++ G +T
Sbjct: 291 HLGIDDTKNITRVVQRMLSEGAVLKLT 317
>gi|154340904|ref|XP_001566405.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063728|emb|CAM39913.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 405
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 99/262 (37%), Gaps = 65/262 (24%)
Query: 6 PQKLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQI--TVCFQIY------ 56
P Q FDY +VVD EATC++ +P E+IE P V++ TGQ+ F Y
Sbjct: 67 PLDQQLFDYIIVVDVEATCEQHNRNYPHEVIEIPGVLIDVRTGQVDRARSFHTYVKPWRN 126
Query: 57 --------------------------ALFLHDNWQQHMGVTPTNFAVVTWSD--WDCQVM 88
A+ L + W + P + +D WD +
Sbjct: 127 PRLTPFCTQLTGITQEMVDAAPSITEAVQLFEKWYRE--TIPRGAKTIFAADGPWDFKNF 184
Query: 89 L-ESECRFKNIPKPSYFNRWINLRVPFSKGDVRCN---------LKEAVELGWHGRVHCG 138
+ E ++ PS F ++++R F+ R N + + L + GR H G
Sbjct: 185 IHEHHILRDHVGFPSIFYEYLDIRTTFAH---RLNHGVPIKLDAMLRKMHLRFDGRPHSG 241
Query: 139 LDDSMNIARLLAVIMQRG--FKFSITKSLTTPQDITQDSVMTWNRHHQFLVRQRKCTFQH 196
DD+ NIARL +M+ G F I L D V + +R H
Sbjct: 242 FDDAYNIARLTVAMMKVGCVLDFVIAIPLDDEYHYHLDGVPLY---------RRGEGSGH 292
Query: 197 TSRDPAEVEEFRYCFCGAKSFK 218
RD VE+ + GA FK
Sbjct: 293 VDRDV--VEDVAKRYYGADYFK 312
>gi|291002083|ref|XP_002683608.1| exonuclease family protein [Naegleria gruberi]
gi|284097237|gb|EFC50864.1| exonuclease family protein [Naegleria gruberi]
Length = 366
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 46/193 (23%)
Query: 12 FDYFVVVDFEATCDKKIP-----HPQEIIEFPSVI------------------------- 41
+DY V++DFEATCD + QE+IEFP V+
Sbjct: 132 YDYLVIIDFEATCDNGVNPVITRDNQEMIEFPFVVFDLASMEVIHKERYYVKPTWSDKLT 191
Query: 42 -----VSGVTGQITVCFQIYALFLHDNWQQHMGVTPTN---FAVVTWSDWDCQVMLESEC 93
++G+T +I I N+ ++ T T+ F ++T S+WD + +L E
Sbjct: 192 PFCTQLTGITDEILEKEGISLSNAIQNFHNYVKKTFTDGKTFCILTDSEWDIKGLLIKEA 251
Query: 94 RFKNIPKPSYFNRWINLRVPFSK----GDVRCNLKEAVE---LGWHGRVHCGLDDSMNIA 146
K I SYF + +LR +SK VR LK V+ L + G+ H GL D + I+
Sbjct: 252 TTKGISFDSYFRTFYDLRKEYSKCYPYAFVR-GLKSMVDQSGLSFVGQHHSGLCDCLTIS 310
Query: 147 RLLAVIMQRGFKF 159
++ ++ G F
Sbjct: 311 EIVKRMIYDGHIF 323
>gi|195621024|gb|ACG32342.1| histone mRNA exonuclease 1 [Zea mays]
Length = 330
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 61 HDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----S 115
H+ W++ G + A VT +WD + + +C+ I P+YF WINL+ +
Sbjct: 205 HNLWKKEQGGSLNRGAFVTCGNWDLKTKVPEQCKVSKINLPTYFMEWINLKDIYLNFYNR 264
Query: 116 KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
+ + ++L G H G+DDS NIAR++ ++ G IT
Sbjct: 265 RATGMMTMMRELQLPIVGNHHLGIDDSKNIARVVQRMLADGAVIQIT 311
>gi|212722758|ref|NP_001131746.1| uncharacterized protein LOC100193112 [Zea mays]
gi|194692414|gb|ACF80291.1| unknown [Zea mays]
gi|413944431|gb|AFW77080.1| histone mRNA exonuclease 1 [Zea mays]
Length = 330
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 61 HDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----S 115
H+ W++ G + A VT +WD + + +C+ I P+YF WINL+ +
Sbjct: 205 HNLWKKEQGGSLNRGAFVTCGNWDLKTKVPEQCKVSKINLPTYFMEWINLKDIYLNFYNR 264
Query: 116 KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
+ + ++L G H G+DDS NIAR++ ++ G IT
Sbjct: 265 RATGMMTMMRELQLPIVGNHHLGIDDSKNIARVVQRMLADGAVIQIT 311
>gi|402589059|gb|EJW82991.1| hypothetical protein WUBG_06097 [Wuchereria bancrofti]
Length = 149
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 42/134 (31%)
Query: 10 QDFDYFVVVDFEATCDKKI---PHPQEIIEFPSVIVSG---------------------- 44
QDFDYF+V+DFEATC++ I PH QEIIEFP + +SG
Sbjct: 14 QDFDYFLVLDFEATCEEGIKIMPH-QEIIEFPVIQLSGKNLEEVGRFHRYVRPTERPILT 72
Query: 45 -----VTGQITVCFQIYA-----LFLHDNWQQHMGVTPTN------FAVVTWSDWDCQVM 88
+TG + + A L D W + + T+ F +T DWD V+
Sbjct: 73 SFCTDLTGIVQETVESQASLPEVLDAFDKWLLDLNLINTDHSMKSLFTFITSGDWDLGVL 132
Query: 89 LESECRFKNIPKPS 102
L SE ++N+ P
Sbjct: 133 LPSEANYRNLELPE 146
>gi|255564549|ref|XP_002523270.1| exonuclease, putative [Ricinus communis]
gi|223537483|gb|EEF39109.1| exonuclease, putative [Ricinus communis]
Length = 329
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 60/229 (26%)
Query: 4 FLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------ 57
F ++ QDF++F+V D E EI+EFP +I+ T F +
Sbjct: 109 FKRKRPQDFEFFLVFDLEGKV--------EILEFPVLIIDAKTMAFVDLFHRFVRPSAMS 160
Query: 58 --------------------------------------LFLHDNWQQHMGVTPTNFAVVT 79
L H W++ G A VT
Sbjct: 161 EQRINEYIENKYGKFGVDRVWHDTALPFNEVIQEFEAWLTHHHLWEKKHGGHLNRAAFVT 220
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRC--NLKEAVELGWH 132
+WD + + +C I P YF WINL+ + K + R + + +++
Sbjct: 221 CGNWDVKTQIPRQCTVSKIKLPRYFMEWINLKDVYQNFYNPKQEARGMRTMMQQLKIPML 280
Query: 133 GRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWNR 181
G H G+DD+ N+AR+L ++ G IT + P I + + NR
Sbjct: 281 GSHHLGIDDTKNVARILQRMLADGAVIPIT-AWRNPDSIGNVNFLYKNR 328
>gi|146092929|ref|XP_001466576.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134070939|emb|CAM69615.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 880
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 48/192 (25%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQQHMG 69
+DY +V+DFEATC++ P + EIIEFP V+V ++ F F+ +++ +
Sbjct: 629 YDYLLVLDFEATCEEHPPPNYLYEIIEFPVVVVDARLQRVVAEFH---RFVRPRYKRELS 685
Query: 70 VTPTNFAVVTWSDWDCQVMLE-----------------SECRF----------------- 95
+ D D LE + C F
Sbjct: 686 PFCQKLTGMRQEDVDTAASLEEVIRQFERWLSHTLPPHARCMFVTDGPMDLREFMYYHSV 745
Query: 96 --KNIPKPSYFNRWINLRVPF------SKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ I PS F ++I+++ F S+G ++ L E + L + GR+H GLDD+ NIA
Sbjct: 746 SRQGIRFPSLFYQFIDVKQTFACFFRCSQGKIKAML-EVLHLPFEGRLHSGLDDARNIAS 804
Query: 148 LLAVIMQRGFKF 159
++ ++ G F
Sbjct: 805 IVIGLLHYGCSF 816
>gi|398018617|ref|XP_003862473.1| hypothetical protein, conserved [Leishmania donovani]
gi|322500703|emb|CBZ35780.1| hypothetical protein, conserved [Leishmania donovani]
Length = 880
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 48/192 (25%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQQHMG 69
+DY +V+DFEATC++ P + EIIEFP V+V ++ F F+ +++ +
Sbjct: 629 YDYLLVLDFEATCEEHPPPNYLYEIIEFPVVVVDARLQRVVAEFH---RFVRPRYKRELS 685
Query: 70 VTPTNFAVVTWSDWDCQVMLE-----------------SECRF----------------- 95
+ D D LE + C F
Sbjct: 686 PFCQKLTGMRQEDVDTAASLEEVIRQFERWLSHTLPPHARCMFVTDGPMDLREFMYYHSV 745
Query: 96 --KNIPKPSYFNRWINLRVPF------SKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ I PS F ++I+++ F S+G ++ L E + L + GR+H GLDD+ NIA
Sbjct: 746 SRQGIRFPSLFYQFIDVKQTFACFFRCSQGKIKAML-EVLHLPFEGRLHSGLDDARNIAS 804
Query: 148 LLAVIMQRGFKF 159
++ ++ G F
Sbjct: 805 IVIGLLHYGCSF 816
>gi|389602001|ref|XP_001566397.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505274|emb|CAM39905.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 881
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 48/192 (25%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQQHMG 69
++Y +V+DFEATC++ PH EIIEFP V+V ++ F F+ +++ +
Sbjct: 630 YEYLLVLDFEATCEEHPPHNYLHEIIEFPVVVVDVRLQRVVAEFH---RFVRPRYKRELS 686
Query: 70 VTPTNFAVVTWSDWDCQVMLE-----------------SECRF----------------- 95
+ D D LE + C F
Sbjct: 687 SFCKRLTGMRQEDVDTAASLEEVILQFERWFSHTLPQHARCVFATDGPMDLREFMYHHSV 746
Query: 96 --KNIPKPSYFNRWINLRVPF------SKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ I P F ++I+++ F S+G ++ L EA+ L + GR+H GLDD+ NIA
Sbjct: 747 SRQGIRFPPLFYQFIDVKQTFACFFQCSQGKIKAML-EALHLPFEGRLHSGLDDARNIAS 805
Query: 148 LLAVIMQRGFKF 159
++ ++ G F
Sbjct: 806 IVIGLLHYGCTF 817
>gi|389593763|ref|XP_003722130.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438628|emb|CBZ12387.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 405
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 89/225 (39%), Gaps = 54/225 (24%)
Query: 6 PQKLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQIT-------------- 50
P Q FDY +VVD EATC++ +P E+IE P V+++ TGQ+
Sbjct: 67 PLDQQLFDYIIVVDVEATCEQNNRNYPHEVIEIPGVLINVRTGQVDRARSFHTFVKPWRN 126
Query: 51 -----VCFQIY---------------ALFLHDNWQQHMGVTPTNFAVVTWSD--WDCQVM 88
C Q+ A+ L + W + P + +D WD +
Sbjct: 127 PRLTPFCTQLTGITQEVVDAAPSITEAIQLFEKW--YWETIPRGAKTIFAADGPWDFKNF 184
Query: 89 L-ESECRFKNIPKPSYFNRWINLRVPFSKGDVRCN---------LKEAVELGWHGRVHCG 138
+ E ++ PS F ++++R F+ R N + + L + GR H G
Sbjct: 185 IHEHHILRDHVGFPSIFYEYLDIRTTFAH---RLNHGVPIKLDAMLRKMNLRFDGRPHNG 241
Query: 139 LDDSMNIARLLAVIMQRG--FKFSITKSLTTPQDITQDSVMTWNR 181
DD+ NIARL +M+ G F I L D V + R
Sbjct: 242 FDDAYNIARLAVAMMKAGCVLDFVIAIPLDDAYHYHLDGVPLYRR 286
>gi|402224358|gb|EJU04421.1| exonuclease RNase T and DNA polymerase III [Dacryopinax sp. DJM-731
SS1]
Length = 212
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 50/197 (25%)
Query: 14 YFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIY-----ALFLHDNWQQ 66
YF+++DFEATC P QE+IEFP ++ S T F Y + L D +
Sbjct: 14 YFLILDFEATCASPRPVNFVQEVIEFPCIVYSMEQEYPTAMFHEYVKPLLSPHLTDFCTR 73
Query: 67 HMGVT-----------------------------PTNFAVVTWSDWDCQVMLESECRFKN 97
G++ P +F VT +WD Q ML ++ R
Sbjct: 74 LTGISQATVDSGDKFSNVWRRFNEWLARLCQDTDPRSFIFVTCGNWDLQTMLPAQLRQCG 133
Query: 98 IPKPSY--------FNRWINLRVPFSK---GDVRCNLKEAVE---LGWHGRVHCGLDDSM 143
I P F R++N++ F++ D L E + + GR H G+DD
Sbjct: 134 IEFPRRETGHTGVDFTRYVNIKDAFAEFYDSDPPSGLLEMLHVLGMQLEGRFHSGIDDCR 193
Query: 144 NIARLLAVIMQRGFKFS 160
N++R++ + + G+K
Sbjct: 194 NVSRIIEQMRRDGWKIE 210
>gi|156395505|ref|XP_001637151.1| predicted protein [Nematostella vectensis]
gi|156224261|gb|EDO45088.1| predicted protein [Nematostella vectensis]
Length = 151
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 28/161 (17%)
Query: 12 FDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQQHMGV 70
FDY++V+DFEATC DK P PQEIIEFP V+ T Q F Y V
Sbjct: 12 FDYYLVLDFEATCDDKNKPKPQEIIEFPVTKVNSRTLQTEAEFHQY-------------V 58
Query: 71 TPTNFAVVTWSDWD----CQVMLESECRFKNIPK--PSYFNRWINLRVPFSKGDVRCNLK 124
PT +T D Q M+E + + + + + +P +
Sbjct: 59 CPTAHPKLTTFCTDLTGITQDMVEGKPDLQTTLQVYSDVMGKQSKIGMP--------GML 110
Query: 125 EAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
+ L GR H G+DD+ NI ++L + ++ S T +
Sbjct: 111 HGLGLELVGRHHSGIDDARNITKILVALARKHPNISATGKM 151
>gi|146092931|ref|XP_001466577.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398018621|ref|XP_003862475.1| hypothetical protein, conserved [Leishmania donovani]
gi|134070940|emb|CAM69616.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322500705|emb|CBZ35782.1| hypothetical protein, conserved [Leishmania donovani]
Length = 405
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 88/225 (39%), Gaps = 54/225 (24%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQIT-------------- 50
P Q FDY +VVD EATC++ +P E+IE P V++ TGQ+
Sbjct: 67 PLDQQLFDYIIVVDVEATCEQNSRNYPHEVIEIPGVLIDVRTGQVDRARSFHTFVKPWRN 126
Query: 51 -----VCFQIY---------------ALFLHDNWQQHMGVTPTNFAVVTWSD--WDCQVM 88
C Q+ A+ L + W + P + +D WD +
Sbjct: 127 SRLTPFCTQLTGITQEVVDAAPSITEAIQLFEKWYRE--TIPRGAKTIFAADGPWDFKNF 184
Query: 89 L-ESECRFKNIPKPSYFNRWINLRVPFS---------KGDVRCNLKEAVELGWHGRVHCG 138
+ E ++ PS F ++++R F+ K D + + L + GR H G
Sbjct: 185 IHEHHILRDHVGFPSIFYEYLDIRTTFAHHLNHGVPIKLDA---MLRKMNLRFDGRPHNG 241
Query: 139 LDDSMNIARLLAVIMQRG--FKFSITKSLTTPQDITQDSVMTWNR 181
DD+ NIARL +M+ G F I L D V + R
Sbjct: 242 FDDAYNIARLAVAMMKAGCVLDFVIAIPLDDAYHYHLDGVPLYRR 286
>gi|407832352|gb|EKF98422.1| hypothetical protein TCSYLVIO_010685 [Trypanosoma cruzi]
Length = 793
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 44/200 (22%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITV-------- 51
NP L +DY +V+DFEATC++ P + EIIEFP V+V V Q V
Sbjct: 552 NPVLSHSSCPYDYLLVLDFEATCEESTPPSYLHEIIEFPVVMVD-VRLQRAVAEFHHFVK 610
Query: 52 ----------CFQIY---------ALFLHDNWQQ----HMGVTPTNFAVVTWSDWDCQV- 87
C Q+ AL L D ++ H P + +D +
Sbjct: 611 PKVNPKLSEFCRQLTGIRQEDIDNALPLEDVIRRFERWHAQTVPPGSRTMLATDGPTDLK 670
Query: 88 --MLESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGL 139
M + I PS F +WI+++ F+ +G ++ L +A+ + GR+H G+
Sbjct: 671 EFMYIHSVSRQGIRFPSMFYQWIDVKRFFAHFFQCQQGKIKAML-DALNCPFEGRLHSGI 729
Query: 140 DDSMNIARLLAVIMQRGFKF 159
DD+ N+A ++ +++ G F
Sbjct: 730 DDARNVATIVIRMLKLGCSF 749
>gi|444516848|gb|ELV11300.1| Tankyrase-1 [Tupaia chinensis]
Length = 1316
Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQI----YALFLHDNWQ 65
+DY V+DFEATC++ P EIIEFP V+++ T +I + L +W
Sbjct: 44 YDYICVIDFEATCEEGNPPEFTHEIIEFPIVLLNTHTLEIDQVDRADTFPQVLKKVTDWM 103
Query: 66 Q--HMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLR 111
+ +G T ++++T WD L +C+ + PS+ +WIN+R
Sbjct: 104 KLKELG-TKYKYSILTDGSWDMSKFLNMQCQLSRLRYPSFAKKWINIR 150
>gi|407410781|gb|EKF33094.1| hypothetical protein MOQ_003041 [Trypanosoma cruzi marinkellei]
Length = 379
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 83/220 (37%), Gaps = 44/220 (20%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQI--------------- 49
P Q FDY +VVD EATC+ +P EIIE P V++ G +
Sbjct: 61 PLDRQLFDYIIVVDVEATCESNNENYPHEIIELPGVLIDVRRGIVDKRHSFRSYVKPWRN 120
Query: 50 ----TVCFQIYALFLHD---------------NWQQHMGVTPTNFAVVTWSDWDCQVMLE 90
C ++ + D W + A WD + +
Sbjct: 121 PVLSEFCKKLTGISQEDVDNAPGLPEVVKAFERWYRETIPIGAKVAFAADGPWDFKNFIH 180
Query: 91 SECRFKN-IPKPSYFNRWINLRVPFSK-----GDVRCN-LKEAVELGWHGRVHCGLDDSM 143
++ + P F ++++R F+ ++ + + + L + GR HCG DD++
Sbjct: 181 EHSILRDHVSFPGIFYEYLDIRTTFAHHFNRGAPIKLDAMLRRMRLRFEGRPHCGFDDAV 240
Query: 144 NIARLLAVIMQRG--FKFSITKSLTTPQDITQDSVMTWNR 181
NIARL +M+ G F F I + D+ + R
Sbjct: 241 NIARLAVAMMREGCIFDFLIVIPMDDEYHYHLDTYPLYRR 280
>gi|401416026|ref|XP_003872508.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488732|emb|CBZ23979.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 879
Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 48/192 (25%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQQHMG 69
+DY +V+DFEATC++ P + EIIEFP V+V ++ F F+ +++ +
Sbjct: 628 YDYLLVLDFEATCEEHPPPNYLYEIIEFPVVVVDVRLQRVVAEFH---RFVRPRYKRELS 684
Query: 70 VTPTNFAVVTWSDWDCQVMLE-----------------SECRF----------------- 95
+ D D LE + C F
Sbjct: 685 PFCKKLTGMRQEDVDAAASLEEVVRQFERWLSHTLPPHARCMFVTDGPMDLREFMYYHSV 744
Query: 96 --KNIPKPSYFNRWINLRVPF------SKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ I PS F ++I+++ F S+G ++ L E + L + GR+H GLDD+ NIA
Sbjct: 745 SRQGIRFPSLFYQFIDVKQTFACFFRCSQGKIKAML-EVLHLPFEGRLHSGLDDARNIAS 803
Query: 148 LLAVIMQRGFKF 159
++ ++ G F
Sbjct: 804 IVIGLLHYGCSF 815
>gi|328787319|ref|XP_003250924.1| PREDICTED: ERI1 exoribonuclease 3-like, partial [Apis mellifera]
Length = 241
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 35/140 (25%)
Query: 10 QDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL---------- 58
Q F+Y +V+DFE TC K + PQEIIE P V + +I F Y
Sbjct: 94 QHFNYLLVLDFECTCKKYEKIEPQEIIELPCAAVCTKSWEIVNMFHEYIKPKVHPQLTPF 153
Query: 59 ------FLHD----------------NWQQHMGV--TPTNFAVVTWSDWDCQVMLESECR 94
+ D NW + + A V DWD + ML ++C+
Sbjct: 154 CTQLTGIIQDMVDNESHFSEVFMKFCNWLEEHNYFKNGNDSAFVICGDWDLKFMLPAQCK 213
Query: 95 FKNIPKPSYFNRWINLRVPF 114
+NI P++F +WINL+ F
Sbjct: 214 LENISFPTHFMKWINLKGAF 233
>gi|407410780|gb|EKF33093.1| hypothetical protein MOQ_003040 [Trypanosoma cruzi marinkellei]
Length = 795
Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 42/199 (21%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYAL- 58
NP L +DY +V+DFEATC++ P + EIIEFP V+V + F +
Sbjct: 554 NPVLSHSSCPYDYLLVLDFEATCEESTPPSYLHEIIEFPVVMVDVRLQRAVAEFHHFVKP 613
Query: 59 ----FLHDNWQQHMGVT--------PTNFAVVTWSDWDCQ-------VMLESE------- 92
L + +Q G+ P + + W Q ML ++
Sbjct: 614 KVNPKLSEFCRQLTGIRQEDIDNALPLEDVIRRFERWHAQTIPPGSRTMLATDGPTDLKE 673
Query: 93 ------CRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLD 140
+ I PS F +WI+++ F+ +G ++ L +A+ + GR+H G+D
Sbjct: 674 FMYIHSVSRQGIRFPSMFYQWIDVKRFFAHFFQCQQGKIKAML-DALNCPFEGRLHSGID 732
Query: 141 DSMNIARLLAVIMQRGFKF 159
D+ N+A ++ +++ G F
Sbjct: 733 DARNVATIVIRMLKLGCTF 751
>gi|149603424|ref|XP_001513729.1| PREDICTED: ERI1 exoribonuclease 3-like, partial [Ornithorhynchus
anatinus]
Length = 85
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 34/48 (70%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 20 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYV 67
>gi|320162584|gb|EFW39483.1| three prime histone mRNA exonuclease [Capsaspora owczarzaki ATCC
30864]
Length = 897
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 7/59 (11%)
Query: 1 PNPFLPQKLQDFDYFVVVDFEATCDKKIP---HPQEIIEFPSVIVSGVTGQITVCFQIY 56
P+ + PQ FDYFVV+D+EATC++ +P EIIEFP+V+V+ TG+I ++ Y
Sbjct: 566 PSHYQPQ----FDYFVVIDYEATCEENASFSTYPHEIIEFPAVVVNARTGEIVHSWRSY 620
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 75 FAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK------GDVRCNLKEAVE 128
FA++ WD + + +CR I +P + +W+NLR+ FSK G + L E++
Sbjct: 795 FAILCDGPWDLRDFMTKQCRHSQIFRPWFTQQWVNLRMHFSKFYHMKLGGIDFML-ESLG 853
Query: 129 LGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQ 169
+ + G H GLDD+ NIAR+ +++ G L Q
Sbjct: 854 MQFQGNKHSGLDDATNIARVACQMLRDGCALHTNDDLIRQQ 894
>gi|389593759|ref|XP_003722128.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438626|emb|CBZ12385.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 880
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 48/192 (25%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQQHMG 69
++Y +V+DFEATC++ P + EIIEFP V+V ++ F F+ +++ +
Sbjct: 629 YEYLLVLDFEATCEEHPPPNYLYEIIEFPVVVVDARLQRVVAEFH---RFVRPRYKRELS 685
Query: 70 VTPTNFAVVTWSDWDCQVMLE-----------------SECRF----------------- 95
+ D D LE + C F
Sbjct: 686 SFCKKLTGMRQEDVDTAASLEEVIRQFERWLSHTLPPHARCMFVTDGPMDLREFMYYHSV 745
Query: 96 --KNIPKPSYFNRWINLRVPF------SKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ I PS F ++I+++ F S+G ++ L E + L + GR+H GLDD+ NIA
Sbjct: 746 SRQGIRFPSLFYQFIDVKQTFACFFRCSQGKIKAML-EVMHLPFEGRLHSGLDDARNIAS 804
Query: 148 LLAVIMQRGFKF 159
++ ++ G F
Sbjct: 805 IVIGLLHHGCSF 816
>gi|170573706|ref|XP_001892569.1| exonuclease family protein [Brugia malayi]
gi|158601787|gb|EDP38593.1| exonuclease family protein [Brugia malayi]
Length = 193
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 42/133 (31%)
Query: 10 QDFDYFVVVDFEATCD---KKIPHPQEIIEFPSVIVSGVTGQITVCFQIY---------- 56
Q+FDYF+++DFEATC+ K +PH QEIIEFP + +SG + F Y
Sbjct: 58 QNFDYFLILDFEATCEEGMKIMPH-QEIIEFPVIQLSGKNLEEVGRFHRYVRPTERPILT 116
Query: 57 ----------------------ALFLHDNWQQHMGVTPTN------FAVVTWSDWDCQVM 88
L D W + + T+ F VT DWD V+
Sbjct: 117 SFCTDLTGIVQETVESQESLPEVLNAFDEWLLDLNLINTDHSMKSLFTFVTSGDWDLGVL 176
Query: 89 LESECRFKNIPKP 101
L SE ++N+ P
Sbjct: 177 LPSEANYRNLELP 189
>gi|71417703|ref|XP_810632.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70875193|gb|EAN88781.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 793
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 42/199 (21%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYAL- 58
NP L +DY +V+DFEATC++ P + EIIEFP V+V + F +
Sbjct: 552 NPALSHSSCPYDYLLVLDFEATCEESTPPSYLHEIIEFPVVMVDVRLQRAVAEFHHFVKP 611
Query: 59 ----FLHDNWQQHMGVT--------PTNFAVVTWSDWDCQ-------VMLESE------- 92
L + +Q G+ P + + W Q ML ++
Sbjct: 612 KVNPKLSEFCRQLTGIRQEDIDNALPLEDVIRRFERWHAQTVPPGSRTMLATDGPTDLKE 671
Query: 93 ------CRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLD 140
+ I PS F +WI+++ F+ +G ++ L +A+ + GR+H G+D
Sbjct: 672 FMYIHSVSRQGIRFPSMFYQWIDVKRFFAHFFQCQQGKIKAML-DALNCPFEGRLHSGID 730
Query: 141 DSMNIARLLAVIMQRGFKF 159
D+ N+A ++ +++ G F
Sbjct: 731 DARNVATIVIRMLKLGCSF 749
>gi|145509679|ref|XP_001440778.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408006|emb|CAK73381.1| unnamed protein product [Paramecium tetraurelia]
Length = 431
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 45/202 (22%)
Query: 1 PNPFLPQKLQDFDYFVVVDFEATC----DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
P P +LQ FD +++DFEATC DKK + QEIIEFP+ + + ++ FQ Y
Sbjct: 223 PIPEEEARLQGFDNIIILDFEATCVRESDKK--YLQEIIEFPAQVYNVQERKVKKEFQKY 280
Query: 57 AL-----FLHDNWQQHMGVTPTNF-----------------------AVVTWSDWDCQVM 88
L D + G+T ++T D+D +
Sbjct: 281 IKPVENPILSDFCTELTGITQQQVDEGILLDQAINEFIEFKQGLQKCCILTCGDYDLH-L 339
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFSKG---------DVRCNLKEAVELGWHGRVHCGL 139
L+ E K IP +IN++ F K + + L GR H G+
Sbjct: 340 LKKEAARKGIPISRELQYYINIKKVFPKSLRNPKDPKDPCMVEMLKLCGLDLLGRHHSGI 399
Query: 140 DDSMNIARLL-AVIMQRGFKFS 160
DD NI R++ +I ++ F+F
Sbjct: 400 DDVKNITRIVHYLINEKNFQFD 421
>gi|47218928|emb|CAF98126.1| unnamed protein product [Tetraodon nigroviridis]
Length = 236
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 46/135 (34%)
Query: 78 VTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDVRCNLKEAV---------- 127
+TWSDWD V L+ ECR K I KP N WI+LR + G + A
Sbjct: 101 LTWSDWDLGVCLQYECRRKQIHKPDVLNSWIDLRSTYRVGGCLPSCLPAFLPSCLPAFLP 160
Query: 128 ----------------------------------ELG--WHGRVHCGLDDSMNIARLLAV 151
+LG + GR H GLDD+ N A L A
Sbjct: 161 SFLSFFVLALLYFTVCLFQLFYDRKPRGLNGALQDLGIQFAGREHSGLDDARNTAGLAAR 220
Query: 152 IMQRGFKFSITKSLT 166
+M+ G +T+SLT
Sbjct: 221 MMRDGCVMKVTRSLT 235
>gi|403418454|emb|CCM05154.1| predicted protein [Fibroporia radiculosa]
Length = 398
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 62/200 (31%)
Query: 14 YFVVVDFEATCDKKIPHPQEIIEFPSVIVS------------------------------ 43
Y +++DFEATC + EIIEFP+++ S
Sbjct: 198 YLLILDFEATCGDAVNGQNEIIEFPTLVYSLERDRVEATFHEYVRPVVHPTLTPFCTELT 257
Query: 44 GVTGQITVCFQIYALFLHDNWQQHMGVT--------PTNFAVVTWSDWDCQVMLE----- 90
G+T + C + W++ G P F +T +WD Q ML
Sbjct: 258 GITQDVVGCADTFPTV----WKRFQGFMDDTEGLSDPGAFIFLTCGNWDLQSMLPRQLIL 313
Query: 91 SECRFK-----NIPKPSYFNRWINLRVPFSK-------GDVRCNLKEAVELGWHGRVHCG 138
S+C N+ P FNR+IN++ F K ++ LK+ ++L GR H G
Sbjct: 314 SKCESALDESDNLTAP--FNRFINIKHSFRKLYRLRRQQGMQAMLKD-LKLTLEGRHHSG 370
Query: 139 LDDSMNIARLLAVIMQRGFK 158
+DD NI R++ + G++
Sbjct: 371 IDDCKNILRIVQRMRADGWR 390
>gi|77551215|gb|ABA94012.1| hypothetical protein LOC_Os11g32310 [Oryza sativa Japonica Group]
gi|125577333|gb|EAZ18555.1| hypothetical protein OsJ_34082 [Oryza sativa Japonica Group]
Length = 130
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 208 RYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYF 249
RYC CG +S +K +R+PGP G FFGCG T +GA C+Y+
Sbjct: 68 RYCHCGVESREKEVRRPGPTQGRHFFGCGRWTAARGAACDYY 109
>gi|71417705|ref|XP_810633.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70875194|gb|EAN88782.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 394
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 76/201 (37%), Gaps = 44/201 (21%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQITV------------- 51
P Q FDY +VVD EATC+ + EIIEFP V++ G +
Sbjct: 76 PLDRQLFDYIIVVDVEATCESNNDNYHHEIIEFPGVLIDVRRGIVDTRRSFRSYVKPWRN 135
Query: 52 ------CFQIYALFLHD---------------NWQQHMGVTPTNFAVVTWSDWDCQ-VML 89
C ++ + D W + A WD + +
Sbjct: 136 PVLSEFCKKLTGISQEDVDNAPGLPEVVKAFERWYRETIPIGAKVAFAADGPWDFKNFIY 195
Query: 90 ESECRFKNIPKPSYFNRWINLRVPFSKGDVRC------NLKEAVELGWHGRVHCGLDDSM 143
E ++ P F ++++R F+ R + + L + GR HCG DD++
Sbjct: 196 EHSILRDHVSFPGIFYEYLDIRTTFAHHFNRGAPIKLDAMLRRMRLRFEGRPHCGFDDAV 255
Query: 144 NIARLLAVIMQRG--FKFSIT 162
NIARL +M+ G F F I
Sbjct: 256 NIARLAVAMMRAGCIFDFLIV 276
>gi|71650409|ref|XP_813903.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878830|gb|EAN92052.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 394
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 76/201 (37%), Gaps = 44/201 (21%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQITV------------- 51
P Q FDY +VVD EATC+ + EIIEFP V++ G +
Sbjct: 76 PLDRQLFDYIIVVDVEATCESNNDNYHHEIIEFPGVLIDVRRGIVDTRRSFRSYVKPWRN 135
Query: 52 ------CFQIYALFLHD---------------NWQQHMGVTPTNFAVVTWSDWDCQ-VML 89
C ++ + D W + A WD + +
Sbjct: 136 PVLSEFCKKLTGISQEDVDNAPGLPEVVKAFERWYRETIPIGAKVAFAADGPWDFKNFIY 195
Query: 90 ESECRFKNIPKPSYFNRWINLRVPFSKGDVRC------NLKEAVELGWHGRVHCGLDDSM 143
E ++ P F ++++R F+ R + + L + GR HCG DD++
Sbjct: 196 EHSILRDHVSFPGIFYEYLDIRTTFAHHFNRGAPIKLDAMLRRMRLRFEGRPHCGFDDAV 255
Query: 144 NIARLLAVIMQRG--FKFSIT 162
NIARL +M+ G F F I
Sbjct: 256 NIARLAVAMMRAGCIFDFLIV 276
>gi|116784275|gb|ABK23281.1| unknown [Picea sitchensis]
Length = 338
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 74/205 (36%), Gaps = 56/205 (27%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q DYF+V+D E EI+EFP V++ + + F +
Sbjct: 127 QQVDYFLVLDLEGKV--------EILEFPVVMIDAHSLEFVDAFHRFVRPIKMSEKRVEE 178
Query: 58 -------------------------LFLHDNWQQHM------GVTPTNFAVVTWSDWDCQ 86
L +NW +H +T A VT +WD +
Sbjct: 179 YIDGKYGKLRLDRVWHDTSIPFAEMLQQFENWLRHHQLWEKGALTLHRAAFVTCGNWDVK 238
Query: 87 VMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGWHGRVHCGLDD 141
+ +C+ I P YF WINL+ + + + + + + G H G+DD
Sbjct: 239 TKIPEQCQVSGIKLPPYFMEWINLKDVYLNFYNHRAAGMMAMLKGLSMPIIGSHHVGIDD 298
Query: 142 SMNIARLLAVIMQRGFKFSITKSLT 166
+ NI R+L ++ G IT T
Sbjct: 299 AQNITRILQRMLVDGALMQITAKRT 323
>gi|395334652|gb|EJF67028.1| Exonuclease [Dichomitus squalens LYAD-421 SS1]
Length = 218
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 84/202 (41%), Gaps = 65/202 (32%)
Query: 14 YFVVVDFEATCDKK---IPHPQ-EIIEFPSVI---------------------------- 41
Y +V+DFEATCD +P + EIIEFP+++
Sbjct: 23 YLLVLDFEATCDDSGHIVPRNETEIIEFPTLLYDVDEDKVHATFHEYVRPTRHPTLTPFC 82
Query: 42 --VSGVTGQITV--------CFQIYALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLES 91
++G+ GQ TV ++ Y FL + + P A +T DWD + ML
Sbjct: 83 TELTGI-GQSTVNAADPFPSVWERYQEFLR---TREVLAQPEAVAYLTCGDWDLKTMLPQ 138
Query: 92 ECRFKNIP---KPSY------FNRWINLRVPFS--------KGDVRCNLKEAVELGWHGR 134
+ R PS +NRWINL+ F KG + L+ A ++ GR
Sbjct: 139 QLRLSGTQTGMDPSTNALTAPYNRWINLKKSFQHHYGLKYPKG-MDGMLRHA-KMELEGR 196
Query: 135 VHCGLDDSMNIARLLAVIMQRG 156
H G+DD NI R++ + + G
Sbjct: 197 HHSGIDDCKNILRIVQRMRRDG 218
>gi|307150076|ref|YP_003885460.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
7822]
gi|306980304|gb|ADN12185.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
7822]
Length = 199
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 55/196 (28%)
Query: 9 LQDFDYFVVVDFEATCDKKIP-----------HPQEIIEFPSVIVSGVTGQITVCFQIY- 56
L +DY++V+D EATC + + H EIIE +V+V I FQ +
Sbjct: 4 LNQYDYYLVLDLEATCCELLRSTEGERGTIKRHEMEIIEIGAVMVEKQDLTIVAEFQTFI 63
Query: 57 -------------------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDC 85
A L W + +N +W D+D
Sbjct: 64 KPVRYPILTNFCKSLTSITQTQVDQAPSYPEAAILLKKWLSNY----SNAVFGSWGDYDR 119
Query: 86 QVMLESECRFKNIPKPSYFNRWINLRVPFSKGD---VRCNLKEAVELG---WHGRVHCGL 139
L+ + +F +P P + +NL+ FS+ R +KEA+EL G H G+
Sbjct: 120 HQFLQ-DSKFHQVPFPIAYPH-VNLKQLFSERQGLPKRYGMKEALELAGLTLSGTHHRGI 177
Query: 140 DDSMNIARLLAVIMQR 155
DD+ NIA+LL I+ R
Sbjct: 178 DDARNIAKLLPYILGR 193
>gi|407832351|gb|EKF98421.1| hypothetical protein TCSYLVIO_010684 [Trypanosoma cruzi]
Length = 394
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 76/201 (37%), Gaps = 44/201 (21%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIP-HPQEIIEFPSVIVSGVTGQI--------------- 49
P Q FDY +VVD EATC+ + EIIEFP V++ G +
Sbjct: 76 PLDRQLFDYIIVVDVEATCESNNDNYHHEIIEFPGVLIDVRRGIVDKRRSFRSYVKPWRN 135
Query: 50 ----TVCFQIYALFLHD---------------NWQQHMGVTPTNFAVVTWSDWDCQ-VML 89
C ++ + D W + A WD + +
Sbjct: 136 PVLSEFCKKLTGISQEDVDNAPGLPDVVKAFERWYRETIPIGAKVAFAADGPWDFKNFIY 195
Query: 90 ESECRFKNIPKPSYFNRWINLRVPFSKGDVRC------NLKEAVELGWHGRVHCGLDDSM 143
E ++ P F ++++R F+ R + + L + GR HCG DD++
Sbjct: 196 EHSILRDHVSFPGIFYEYLDIRTTFAHHFNRGAPIKLDAMLRRMRLRFEGRPHCGFDDAV 255
Query: 144 NIARLLAVIMQRG--FKFSIT 162
NIARL +M+ G F F I
Sbjct: 256 NIARLAVAMMRAGCIFDFLIV 276
>gi|312090123|ref|XP_003146498.1| exonuclease [Loa loa]
gi|393907516|gb|EJD74680.1| exonuclease, variant [Loa loa]
Length = 192
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 42/133 (31%)
Query: 10 QDFDYFVVVDFEATCDKKI---PHPQEIIEFPSVIVSG---------------------- 44
Q+FDYF+V+DFEATC++ I PH QEIIEFP + +SG
Sbjct: 57 QNFDYFLVLDFEATCEEGIKIMPH-QEIIEFPVIQLSGKNLEEISRFHRYVKPTERPILT 115
Query: 45 -----VTG--QITVCFQIY---ALFLHDNWQQHMGV------TPTNFAVVTWSDWDCQVM 88
+TG Q TV Q L D W + + ++F +T DWD V+
Sbjct: 116 SFCTELTGIVQETVASQESLPEVLDAFDKWLINSNLINADHSMKSHFTFITCGDWDLGVL 175
Query: 89 LESECRFKNIPKP 101
L SE ++N+ P
Sbjct: 176 LPSEANYRNLKLP 188
>gi|328773880|gb|EGF83917.1| hypothetical protein BATDEDRAFT_33990 [Batrachochytrium
dendrobatidis JAM81]
Length = 267
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 60/193 (31%)
Query: 8 KLQDFDYFVVVDFEATCDKK--IPHPQEIIEFPSVIVSGVTGQITVCFQIYAL-FLH--- 61
+ Q + ++V D EATCD E+IEFP + + G T + F+ Y LH
Sbjct: 74 RFQPYRIYLVCDIEATCDSDSGFDFASEVIEFPVIAIDGTTMETVSTFRRYCRPILHPTL 133
Query: 62 -DNWQQHMGVT-------------------------PTNFAVVTWSD---------WDCQ 86
D +Q G+T P+ V +D WD +
Sbjct: 134 TDFCKQLTGITQEQTDAADPFTVVFADFLEWMLSLYPSTDGVSALTDEVIFVTDGPWDLR 193
Query: 87 VMLESECRFKNIPKPSYFNRWINLRVPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIA 146
LE E + NI +P + + + ++ W R HCG DD+ N+A
Sbjct: 194 DFLEKEFIYSNIQRPDFIH-----------------ARSSISAAW--REHCGFDDASNVA 234
Query: 147 RLLAVIMQRGFKF 159
R+L +++ G +
Sbjct: 235 RILRRMVEDGHRI 247
>gi|449551211|gb|EMD42175.1| hypothetical protein CERSUDRAFT_90779 [Ceriporiopsis subvermispora
B]
Length = 210
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 58/206 (28%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYALFL----- 60
P + Y +++DFEATC + P EIIEFP+++ ++ F Y +
Sbjct: 4 PTTQKPLQYLLILDFEATCGDDLRGPPEIIEFPTLLYDIQKDEVQATFHEYVRPIISPTL 63
Query: 61 ----------------------------HDNWQQHMGV--TPTNFAVVTWSDWDCQVML- 89
D + H G+ + A +T DWD + ML
Sbjct: 64 TAFCTKLTGITQDTVDAAQPFPEVWSRFQDFLRSH-GIYDAAESAAFLTCGDWDLKTMLP 122
Query: 90 ------ESECRFKN----IPKPSYFNRWINLRVPFSK-------GDVRCNLKEAVELGWH 132
ESE IP +NRWIN++ F K D+ L++ + L
Sbjct: 123 RQLALSESEHGLDEAGDLIPP---YNRWINIKQAFRKQYGMRYQNDMLGMLRK-LRLELE 178
Query: 133 GRVHCGLDDSMNIARLLAVIMQRGFK 158
GR H G+DD N+ +++ + G+K
Sbjct: 179 GRHHSGIDDCKNVLQIVRKMRAEGWK 204
>gi|196013998|ref|XP_002116859.1| hypothetical protein TRIADDRAFT_4552 [Trichoplax adhaerens]
gi|190580577|gb|EDV20659.1| hypothetical protein TRIADDRAFT_4552, partial [Trichoplax
adhaerens]
Length = 189
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 44/186 (23%)
Query: 13 DYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYA------------- 57
D+++V+DFEAT K H EIIEFP++++ T ++ F Y
Sbjct: 5 DFYLVIDFEATTKSKYRDYHLPEIIEFPALLIDASTLEVFSEFHSYVRPTINRTLSKFCK 64
Query: 58 ---------------------LFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
LFL NW + NF++VT S + ++CR +
Sbjct: 65 RLTGISQAMVDKASDFATVHHLFL--NWLCNATSNRNNFSMVTSSCKGTIELFLTQCRRE 122
Query: 97 NIPKPSYFNRWINLRVPFSK--GDVR----CNLKEAVELGWHGRVHCGLDDSMNIARLLA 150
+ P + WI+L + F K G R ++ ++ + GR G + N+A +L
Sbjct: 123 KVAIPLWIEHWIDLPIIFRKCYGYHRFPTISDMLHKFQIAYEGRFLHGFQRAENLAAILC 182
Query: 151 VIMQRG 156
++Q G
Sbjct: 183 GMLQDG 188
>gi|168056660|ref|XP_001780337.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668285|gb|EDQ54896.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 255
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 85/216 (39%), Gaps = 61/216 (28%)
Query: 8 KLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA---------- 57
K Q F++++V+D E EI+EFP ++++ T ++ F +
Sbjct: 40 KEQPFEFYLVLDLEGRV--------EILEFPVLLINAQTLEVVDRFHRFVRPVIMTEERQ 91
Query: 58 ---------------------------LFLHDNW-QQHMGVTP------TNFAVVTWSDW 83
L ++W + H P T A VT +W
Sbjct: 92 AEYIKGKYGRWGLDRVWHDTAIPFTEVLNAFESWMESHSLYNPEDPSKLTRAAFVTCGNW 151
Query: 84 DCQVMLESECRFKNIPKPSYFNRWINLRVPF------SKGDVRCNLKEAVELGWHGRVHC 137
D + + +CR I YFN WINL+ + G + LK + + G H
Sbjct: 152 DVKTKIPEQCRDSGIELKPYFNEWINLKDIYYNFYRRRAGGMLAMLK-GLNIPLTGTHHV 210
Query: 138 GLDDSMNIARLLAVIMQRG--FKFSITKSLTTPQDI 171
GLDD+ NIA++L ++ G + S + ++ P+ +
Sbjct: 211 GLDDAHNIAQILQRMLAHGAIVRISAKRKVSDPKAV 246
>gi|313226631|emb|CBY21776.1| unnamed protein product [Oikopleura dioica]
gi|313240006|emb|CBY32366.1| unnamed protein product [Oikopleura dioica]
Length = 259
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 77 VVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRV-----------PFSKGDVRCNLKE 125
+ TW+DWD L SE + K I P W++LR V L
Sbjct: 150 ICTWTDWDISSQLLSETKRKKIEIPEMLKSWVDLRAVSRVYLQSVNKKMEHIPVLRRLFR 209
Query: 126 AVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQD 174
+++ W G+ H G+DD+ N AR LAV M K +T++L I D
Sbjct: 210 VLKMEWEGKHHSGIDDARNTAR-LAVKMAANLK--VTRTLGVLGRIAGD 255
>gi|75812567|ref|YP_320186.1| exonuclease [Anabaena variabilis ATCC 29413]
gi|75705323|gb|ABA24997.1| Exonuclease [Anabaena variabilis ATCC 29413]
Length = 192
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 80/184 (43%), Gaps = 39/184 (21%)
Query: 9 LQDFDYFVVVDFEAT-CDKKI--PHPQEIIEFPSVIVSGVTGQITVCFQIY--------- 56
L FDYF+V+D EAT CDK H EIIE +V+V T +I FQ +
Sbjct: 4 LNQFDYFLVLDLEATCCDKGTIKRHEMEIIEIGAVMVEAQTLKILDEFQTFIKPIRHPIL 63
Query: 57 ----ALFLHDNWQQ--HMGVTPTNFAVV-------------TWSDWDCQVMLESECRFKN 97
L Q H P A++ +W D+D + + + +F N
Sbjct: 64 TEFCKLLTSITQTQVDHAPEYPEAIAMLKQWLSKYPNAVFGSWGDYD-RNQFKQDSKFHN 122
Query: 98 IPKPSYFNRWINLRVPFSKGD---VRCNLKEAVEL---GWHGRVHCGLDDSMNIARLLAV 151
I P + INL+ FS+ R + EA++L G H G+DD+ NIA+LL
Sbjct: 123 ILFPIAYPH-INLKQMFSESQDLPKRYGMAEALQLVNIELEGIHHRGIDDAKNIAKLLPW 181
Query: 152 IMQR 155
I+
Sbjct: 182 ILNE 185
>gi|323451416|gb|EGB07293.1| hypothetical protein AURANDRAFT_14950 [Aureococcus anophagefferens]
Length = 191
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 56/192 (29%)
Query: 18 VDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA-------------------- 57
+DFE TC+ + EIIEFP V+ T +IT F Y
Sbjct: 1 LDFECTCEPGWDYIHEIIEFPVVLFDTRTREITDSFHSYVRPTENATLSAFCTDLTGIEQ 60
Query: 58 ------------LFLHDNWQQHMGVT----PTNFAVVTWSDWDCQVMLESECRFKNIPKP 101
L D W + G+ +FA+ T WD + L+ E K + KP
Sbjct: 61 ATVDAAPTLPEVLDDLDAWLRARGLVGAEPAASFALAT-DGWDLEHFLDVELSRKLLYKP 119
Query: 102 -SYFNRWINLRVPF----SKGDVR-----------CNLKEAV---ELGWHGRVHCGLDDS 142
Y +RW++L F + DV NL + ++ + GR+H G+DD+
Sbjct: 120 GDYLDRWVDLSKAFDLRRAAKDVENGRKKGRSRRRSNLNTMLRHHKMEFEGRLHSGIDDA 179
Query: 143 MNIARLLAVIMQ 154
N+AR+ +++
Sbjct: 180 TNLARVGIALLE 191
>gi|298711928|emb|CBJ48615.1| phosphotransferase [Ectocarpus siliculosus]
Length = 528
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 52/177 (29%)
Query: 31 PQEIIEFPSVIVSGVTGQITVCFQIY--------------------------ALFLHDNW 64
P E+IEFP+V++ + ++ F++Y + +
Sbjct: 333 PMEVIEFPTVLLDAHSLKVLDEFRVYVRPVRHPILTPFCTSLTGIEQSTVDGGVLFEEAL 392
Query: 65 QQHMGVTPTNFAV---------VTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS 115
QH N + VT +WD + M+ ++C+ + P P +FN W N++ F
Sbjct: 393 SQHTEFLRRNSCLPGQERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFR 452
Query: 116 KGDVRC-----------------NLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQR 155
R + A+ L GR H GLDD NIAR+ + +R
Sbjct: 453 DVMYRAARQSQRRPRGGKVGGMPAMLSALGLVLEGRHHSGLDDCRNIARIAIELCRR 509
>gi|158341366|ref|YP_001522531.1| exonuclease [Acaryochloris marina MBIC11017]
gi|158311607|gb|ABW33217.1| exonuclease [Acaryochloris marina MBIC11017]
Length = 194
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 37/180 (20%)
Query: 12 FDYFVVVDFEATC--DKKIPHPQ-EIIEFPSVIVSGVTGQITVCFQIYA----------- 57
+DY+++VD EATC IPH + E IE +VIV V +I F ++
Sbjct: 8 YDYYLIVDLEATCCNTFSIPHKETETIEIGAVIVESVGLEIIDEFTVFIKPIRHPKLTDF 67
Query: 58 -LFLHDNWQQHMGVTPT----------------NFAVVTWSDWDCQVMLESECRFKNIPK 100
L Q + PT N +W D+D + LE E ++ IP
Sbjct: 68 CTELTTIKQTDLEDAPTFPQAVGTFKRWFEQYENSVFCSWGDYD-KNQLERESKYHKIPY 126
Query: 101 P---SYFN--RWINLRVPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQR 155
P +FN + +L + K V L G H G+DD+ N+A+L+ I+ R
Sbjct: 127 PMGEEHFNLKKQFSLALRTKKHYGMAKALMTVGLSLDGTHHRGIDDARNLAKLMPFIIGR 186
>gi|427709554|ref|YP_007051931.1| Exonuclease RNase T and DNA polymerase III [Nostoc sp. PCC 7107]
gi|427362059|gb|AFY44781.1| Exonuclease RNase T and DNA polymerase III [Nostoc sp. PCC 7107]
Length = 188
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 47/185 (25%)
Query: 12 FDYFVVVDFEATC-DKKI--PHPQEIIEFPSVIVSGVT---------------------- 46
+DY +V+D EATC D+ H EIIE +V+V
Sbjct: 7 YDYLLVLDLEATCCDQGTIKRHEMEIIEIGAVMVEAQNLTVIDEFQTFIKPVRYPILTDF 66
Query: 47 -GQITVCFQIY---------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
+T QIY A+ + W H N +W D+D + + + +F
Sbjct: 67 CKSLTSITQIYVDQAPGYPEAIAILQKWLSHY----PNAVFGSWGDYD-RNQFKQDSKFH 121
Query: 97 NIPKPSYFNRWINLRVPFSKGDV---RCNLKEAVEL---GWHGRVHCGLDDSMNIARLLA 150
N+P P + INL+ FS+ R + EA++L G H G+DD+ NIA+LL
Sbjct: 122 NLPFPIAYPH-INLKQHFSESQSLSKRYGMAEALQLVNIELQGTHHRGIDDARNIAKLLP 180
Query: 151 VIMQR 155
I+ R
Sbjct: 181 WILNR 185
>gi|335775859|gb|AEH58712.1| 3'-5' exoribonuclease 1-like protein, partial [Equus caballus]
Length = 218
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 37/139 (26%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 77 YDYICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 136
Query: 63 -------------------------NWQ--QHMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +CR
Sbjct: 137 INLTGITQDLVDGADTFPQVLRKVVDWMKLKELG-TKYKYSILTDGSWDMSKFLNIQCRL 195
Query: 96 KNIPKPSYFNRWINLRVPF 114
+ P + +WIN+R +
Sbjct: 196 SRLKYPPFAKKWINIRKSY 214
>gi|427725307|ref|YP_007072584.1| Exonuclease RNase T and DNA polymerase III [Leptolyngbya sp. PCC
7376]
gi|427357027|gb|AFY39750.1| Exonuclease RNase T and DNA polymerase III [Leptolyngbya sp. PCC
7376]
Length = 204
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 39/182 (21%)
Query: 11 DFDYFVVVDFEATC--DKKIP-HPQEIIEFPSVIVSGVTGQITVCFQIYAL-----FLHD 62
D DY++++D EATC DK IP H EIIE +V++ T +I +Q + L D
Sbjct: 21 DQDYYLIIDLEATCCDDKSIPRHKMEIIEIGAVLLHSKTLEIESEYQTFVQPILNPTLTD 80
Query: 63 NWQQHMGVTPTN-----------------------FAVVTWSDWDCQVMLESECRFKNIP 99
+ +T + + +W +D + E +C+ N+
Sbjct: 81 FCKTLTSITQGDVNQAPHFPEAIQGLQKWLYPFRSYVFCSWGKYD-KTQFERDCQRHNVD 139
Query: 100 KPSYFNRWINLRVPFS---KGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVIM 153
P + ++ INL+ FS + + A+E L G H G+DD+ NIAR++ +
Sbjct: 140 YP-FPSKHINLKKSFSAIISSSKKFGMNGALEKLGLPLIGTHHRGIDDARNIARIVQALK 198
Query: 154 QR 155
+
Sbjct: 199 SK 200
>gi|146181163|ref|XP_001022261.2| exonuclease family protein [Tetrahymena thermophila]
gi|146144274|gb|EAS02016.2| exonuclease family protein [Tetrahymena thermophila SB210]
Length = 200
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 36/192 (18%)
Query: 8 KLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
KL DY V+ DFE K EIIEFP VIV +I F +
Sbjct: 3 KLNCIDYLVISDFECNSGMKGFVLHEIIEFPIVIVDVKNKKIIKEFTTFVKPTYHPKLTN 62
Query: 59 FLHDNW---QQHMGVTPT---NFAVVTW--------SD-----WDCQ---VMLESECRFK 96
F+ + Q+ + PT F ++T SD +DC L +E K
Sbjct: 63 FIKNLTYIEQKDVDQAPTISEVFEIITQEIKQNTNDSDSTFFIFDCDSDATYLRAEINLK 122
Query: 97 NIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAV 151
N+ YFN++ NL+ F K N+ + + L G H L D+ NI +++
Sbjct: 123 NLKHSPYFNQYFNLKELFDRFFNVKAKSLENMLKILNLTQTGHPHIALHDARNICQVVMC 182
Query: 152 IMQRGFKFSITK 163
++++G+ F T+
Sbjct: 183 MLEKGYIFDQTQ 194
>gi|357516489|ref|XP_003628533.1| Exonuclease domain-containing protein, putative [Medicago
truncatula]
gi|355522555|gb|AET03009.1| Exonuclease domain-containing protein, putative [Medicago
truncatula]
Length = 308
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 55/218 (25%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL----------- 58
Q+ D+F+V+D E EI+EFP + +S T ++ F +
Sbjct: 99 QNHDFFLVLDLEGKV--------EILEFPVLKISAKTLKVEDIFHRFVRPSNMSEQRINE 150
Query: 59 -------------FLHDN-------------W--QQHM--GVTPTNFAVVTWSDWDCQVM 88
HD W QQ + G A VT +WD +
Sbjct: 151 YIEGKYGKIGVDRVWHDTAIPFKEVIEEFEAWLVQQKLWTGGNLDRAAFVTCGNWDLKTK 210
Query: 89 LESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGWHGRVHCGLDDSM 143
+ +C I P YF WINL+ + + + + +++ G H G+DD+
Sbjct: 211 VPQQCEVSRIKVPPYFMEWINLKDIYLNFYNRRATGMVTMMKELQMPLVGSHHLGIDDTK 270
Query: 144 NIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWNR 181
NI R+L ++ G IT + P+ + + S + NR
Sbjct: 271 NITRVLQHMLVDGALIQIT-ARRNPKSLREVSFLFKNR 307
>gi|361069199|gb|AEW08911.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143928|gb|AFG53450.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143930|gb|AFG53451.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143932|gb|AFG53452.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143934|gb|AFG53453.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143936|gb|AFG53454.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143940|gb|AFG53456.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143942|gb|AFG53457.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143944|gb|AFG53458.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143946|gb|AFG53459.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143948|gb|AFG53460.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143950|gb|AFG53461.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143952|gb|AFG53462.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143954|gb|AFG53463.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143956|gb|AFG53464.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143958|gb|AFG53465.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143960|gb|AFG53466.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
Length = 86
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
W GR H GLDD+ N ARLL +M+RG K +IT S+
Sbjct: 5 WEGRAHSGLDDAKNTARLLLDLMRRGIKLTITNSM 39
>gi|383143938|gb|AFG53455.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
gi|383143962|gb|AFG53467.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
Length = 86
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
W GR H GLDD+ N ARLL +M+RG K +IT S+
Sbjct: 5 WEGRAHSGLDDAKNTARLLLDLMRRGIKLTITNSM 39
>gi|261334507|emb|CBH17501.1| phosphotransferase, putative [Trypanosoma brucei gambiense DAL972]
Length = 540
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 85/218 (38%), Gaps = 67/218 (30%)
Query: 6 PQKLQDFDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL----- 58
P + FD ++V+DFEATC++ ++ P E+IEFP V+V G FQ Y
Sbjct: 25 PLREPPFDTYMVLDFEATCERHQRLEVP-EVIEFPIVLVDARNGNTISEFQQYVRPVVNP 83
Query: 59 --------------------------------FLHDNWQQHMGVTPTN--FAVVTWSDWD 84
+LH N + G T N + VT DWD
Sbjct: 84 QLSEFCTELTGITQSVVDRASTFPDVFTAAMNYLHQN---NCGETEINKRYLPVTCGDWD 140
Query: 85 CQVMLESECRF-------KNIPKPSYFNRWINLRVPFSK------GDVRC-------NLK 124
+ ML + + N+P PS RW N++ + G ++
Sbjct: 141 LKTMLPIQVKACIQQGFTVNVP-PS-LRRWFNIKQYMQRVLSPGLGQTVSQPIHDLPDMM 198
Query: 125 EAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
+ L GR H G+DD NIA +L +++ G + T
Sbjct: 199 SVLGLEMKGRHHSGIDDCRNIAAVLCELIKLGHVITPT 236
>gi|361069201|gb|AEW08912.1| Pinus taeda anonymous locus CL2233Contig1_02 genomic sequence
Length = 86
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
W GR H GLDD+ N ARLL +M+RG K +IT S+
Sbjct: 5 WEGRAHSGLDDAKNTARLLLDLMRRGIKLTITNSM 39
>gi|281202353|gb|EFA76558.1| putative RNase III [Polysphondylium pallidum PN500]
Length = 164
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 64/150 (42%), Gaps = 46/150 (30%)
Query: 12 FDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVCFQIYALFLH-------- 61
F Y VV+DFEATC+ KI QEIIEFPSVIV T +I F+ Y +H
Sbjct: 5 FKYIVVLDFEATCENGTKIAK-QEIIEFPSVIVEVETCKIVDTFREYVKPVHNPRLSAFC 63
Query: 62 ---------------------DNWQQHM----------GVTPTN-FAVVTWSDWDCQVML 89
+N +Q + +P N F +T DWD ML
Sbjct: 64 TELTGIQQAWVDEAQTFSVVMENHRQWLIKNQLLLPSGERSPVNTFTFLTCGDWDLNQML 123
Query: 90 ESECRF---KNIPKPSYFNRWINLRVPFSK 116
+ +F + PSYF WIN++ F +
Sbjct: 124 PVQYKFLAGSDGKWPSYFCEWINIKKSFEQ 153
>gi|427716974|ref|YP_007064968.1| Exonuclease RNase T and DNA polymerase III [Calothrix sp. PCC 7507]
gi|427349410|gb|AFY32134.1| Exonuclease RNase T and DNA polymerase III [Calothrix sp. PCC 7507]
Length = 183
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 41/182 (22%)
Query: 14 YFVVVDFEATC--DKKIP-HPQEIIEFPSVIVSGVTGQITVCFQIY-------------- 56
YF++VD EATC D IP H EIIE +V+++ +I FQ +
Sbjct: 4 YFLIVDLEATCSDDGSIPRHEMEIIEIGAVMLNRENWEIDSEFQTFIKPIRHPKLTNFCT 63
Query: 57 ---ALFLHD------------NWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKP 101
+ HD N+Q+ M P N+ +W ++D ++ +C+F NI P
Sbjct: 64 ELTTICQHDVENAPEFAKAIKNFQEWMYSFP-NYIFCSWGNYDKTQFIQ-DCKFHNISYP 121
Query: 102 SYFNRWINLRVPFSKGDVRCN---LKEA---VELGWHGRVHCGLDDSMNIARLLAVIMQR 155
+ + N++ FS+ V + +A +E+ G H G+DD+ NIA + + +
Sbjct: 122 -FNSEHRNIKKEFSEYIVTSKSFGMAQALNHLEIELKGTHHRGIDDARNIASIYRYMQTK 180
Query: 156 GF 157
+
Sbjct: 181 KY 182
>gi|17548214|ref|NP_508415.1| Protein CRN-4 [Caenorhabditis elegans]
gi|2496805|sp|Q10905.1|CRN4_CAEEL RecName: Full=Cell death-related nuclease 4; Flags: Precursor
gi|31747257|gb|AAP57300.1| cell death-related nuclease 4 [Caenorhabditis elegans]
gi|351065238|emb|CCD61184.1| Protein CRN-4 [Caenorhabditis elegans]
Length = 298
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 47/202 (23%)
Query: 12 FDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQI--TVCFQIYAL---------- 58
FD +++DFE T D +P E+I+F V +I + F Y
Sbjct: 8 FDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKN 67
Query: 59 -------------------FLHDNWQQ---HMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
+++ +QQ +G+ FA V S D + + + +
Sbjct: 68 CVDFTGIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLS 127
Query: 97 NIPKPSYFNRWINLRVPFSKGDVRC------------NLKEAVELGWHGRVHCGLDDSMN 144
NI P++F ++INL F+ R + E +L GR H +DD +N
Sbjct: 128 NIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLN 187
Query: 145 IARLLAVIMQRGFKFSITKSLT 166
IA +L ++ G K ++ + LT
Sbjct: 188 IATILQRMINMGAKVTVNELLT 209
>gi|219109276|pdb|3CG7|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
gi|219109277|pdb|3CG7|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
gi|219109290|pdb|3CM5|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Mn
gi|219109291|pdb|3CM5|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Mn
gi|219109292|pdb|3CM6|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Er
gi|219109293|pdb|3CM6|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Er
Length = 308
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 47/202 (23%)
Query: 12 FDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQI--TVCFQIYAL---------- 58
FD +++DFE T D +P E+I+F V +I + F Y
Sbjct: 18 FDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKN 77
Query: 59 -------------------FLHDNWQQ---HMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
+++ +QQ +G+ FA V S D + + + +
Sbjct: 78 CVDFTGIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLS 137
Query: 97 NIPKPSYFNRWINLRVPFSKGDVRCN------------LKEAVELGWHGRVHCGLDDSMN 144
NI P++F ++INL F+ R + E +L GR H +DD +N
Sbjct: 138 NIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLN 197
Query: 145 IARLLAVIMQRGFKFSITKSLT 166
IA +L ++ G K ++ + LT
Sbjct: 198 IATILQRMINMGAKVTVNELLT 219
>gi|149068096|gb|EDM17648.1| rCG39336, isoform CRA_a [Rattus norvegicus]
gi|149068097|gb|EDM17649.1| rCG39336, isoform CRA_a [Rattus norvegicus]
gi|149068098|gb|EDM17650.1| rCG39336, isoform CRA_a [Rattus norvegicus]
Length = 99
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
NP + Q +DY +VVDFE+TC D K EIIEFP+V+++ TG+I F Y
Sbjct: 24 NPGGSRFRQLYDYLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAY 80
>gi|441503050|ref|ZP_20985057.1| hypothetical protein C942_04419 [Photobacterium sp. AK15]
gi|441429266|gb|ELR66721.1| hypothetical protein C942_04419 [Photobacterium sp. AK15]
Length = 184
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 34/175 (19%)
Query: 11 DFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQ--- 65
+F+ V D E C D + EIIE + V+G+I Q + HD
Sbjct: 2 NFNRIVCFDLEMCCWNDGRESRTGEIIEIGVAELDLVSGEIVRRAQHFVKPEHDEVSPFC 61
Query: 66 -QHMGVTPTN-------FAVV-------------TWSDW--DCQVMLESECRFKNIPKP- 101
+ G+ P A + ++ W D Q+ L++EC K I P
Sbjct: 62 TELTGIKPEVIKKNGKPLATILKSIEKKFGGRHKIYAAWGRDDQI-LQAECEEKGIKVPF 120
Query: 102 -SYFNRWINLRVPFSKGDVRCNLKEAVEL---GWHGRVHCGLDDSMNIARLLAVI 152
Y N R+ + RC + A+E+ GW GR H G DD+ N+ARL +
Sbjct: 121 TEYLNLATLFRLQRHVNNKRCGQRAAMEMAGIGWEGRQHSGYDDAYNLARLAKTM 175
>gi|217075877|gb|ACJ86298.1| unknown [Medicago truncatula]
Length = 252
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 81/218 (37%), Gaps = 55/218 (25%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL----------- 58
Q+ D+F+V+D E EI+EFP + +S T ++ F +
Sbjct: 43 QNHDFFLVLDLEGKV--------EILEFPVLKISAKTLKVEDIFHRFVRPSNMSEQRINE 94
Query: 59 -------------FLHDN-------------W--QQHM--GVTPTNFAVVTWSDWDCQVM 88
HD W QQ + G A VT +WD +
Sbjct: 95 YIEGKYGKIGVDRVWHDTAIPFKEVIEEFEAWLVQQKLWTGGNLDRAAFVTCGNWDLKTK 154
Query: 89 LESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEAVELGWHGRVHCGLDDSM 143
+ +C I P YF WINL+ + + + + +++ G H G+DD
Sbjct: 155 VPQQCEVSRIKVPPYFMEWINLKDIYLNFYNRRATGMVTMMKELQMPLVGSHHLGIDDPK 214
Query: 144 NIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWNR 181
NI R+L ++ G IT + P+ + + S NR
Sbjct: 215 NITRVLQHMLVDGALIQIT-ARRNPKSLREVSFFFKNR 251
>gi|268578591|ref|XP_002644278.1| Hypothetical protein CBG14050 [Caenorhabditis briggsae]
Length = 212
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 77/199 (38%), Gaps = 47/199 (23%)
Query: 12 FDYFVVVDFEATCD-KKIPHPQEIIEFPSV---------------------IVSGVTGQI 49
FD+ +++DFE T D +K +P E+I+F V I+S
Sbjct: 8 FDHLLILDFETTSDGEKHDYPFEVIQFSVVPLDVKLEGIAFNKFVRPVVNPILSNYCADF 67
Query: 50 TVCFQ-----------IYALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNI 98
T Q +Y FL W Q G A+V S D + + + R
Sbjct: 68 TGIKQEFLNAADTFLVVYKQFLE--WLQKNGFQERKLAIVCDSSQDMWRIAQYQFRLVRE 125
Query: 99 PKPSYFNRWINLRVPFSKG--DVRCN----------LKEAVELGWHGRVHCGLDDSMNIA 146
PS F +WIN++ F G D + N + + + G+ H L D +NIA
Sbjct: 126 TMPSMFRQWINIKRTFDDGLEDGQKNKLVGKSNIEKMSSYLGIELSGKAHDALSDCLNIA 185
Query: 147 RLLAVIMQRGFKFSITKSL 165
+ I++ G +I + L
Sbjct: 186 AITQKILEIGCPVTINEML 204
>gi|148685236|gb|EDL17183.1| exonuclease domain containing 1, isoform CRA_a [Mus musculus]
gi|148685237|gb|EDL17184.1| exonuclease domain containing 1, isoform CRA_a [Mus musculus]
gi|148685238|gb|EDL17185.1| exonuclease domain containing 1, isoform CRA_a [Mus musculus]
Length = 90
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
NP + Q + Y +VVDFE+TC D K EIIEFP+V+++ TG+I F Y
Sbjct: 24 NPGGSRLKQLYAYLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAY 80
>gi|71755417|ref|XP_828623.1| phosphotransferase [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834009|gb|EAN79511.1| phosphotransferase, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 540
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 84/218 (38%), Gaps = 67/218 (30%)
Query: 6 PQKLQDFDYFVVVDFEATCDK--KIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL----- 58
P + FD ++V+DFEATC++ ++ P E+IEFP V+V G FQ Y
Sbjct: 25 PLREPPFDTYMVLDFEATCERHQRLEVP-EVIEFPIVLVDARNGNTISEFQQYVRPVVNP 83
Query: 59 --------------------------------FLHDNWQQHMGVTPTN--FAVVTWSDWD 84
+LH N + G N + VT DWD
Sbjct: 84 QLSQFCTELTGITQSVVDRASTFPDVFTAAMNYLHQN---NCGEREINKRYLPVTCGDWD 140
Query: 85 CQVMLESECRF-------KNIPKPSYFNRWINLRVPFSK------GDVRC-------NLK 124
+ ML + + N+P PS RW N++ + G ++
Sbjct: 141 LKTMLPIQVKACIQQGFTVNVP-PS-LRRWFNIKQYMQRVLSPGLGQTVSQPIRDLPDMM 198
Query: 125 EAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
+ L GR H G+DD NIA +L +++ G + T
Sbjct: 199 SVLGLEMKGRHHSGIDDCRNIAAVLCELIKLGHVITPT 236
>gi|428315536|ref|YP_007113418.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria
nigro-viridis PCC 7112]
gi|428239216|gb|AFZ05002.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria
nigro-viridis PCC 7112]
Length = 189
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 48/189 (25%)
Query: 9 LQDFDYFVVVDFEATC-DKKIPHPQ---EIIEFPSVIVSGVTGQITVCFQIY-------- 56
L ++ ++VVD EATC D++ Q E+IE +V+V T I FQ +
Sbjct: 3 LNNYHCYLVVDLEATCCDRQATIKQTEMEVIEIGAVMVEAKTLTIIDEFQSFIKPIRHPI 62
Query: 57 ------------------------ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESE 92
A+ L NW +N +W D+D Q + +
Sbjct: 63 LTEFCKSLTSISQAQVDRAPTYPEAIALLKNWLSGY----SNGVFGSWGDFDRQ-QFQQD 117
Query: 93 CRFKNIPKPSYFNRWINLRVPFSKGD---VRCNLKEAVELG---WHGRVHCGLDDSMNIA 146
F IP P + +NL+ FS+ R + +A+ L G H G+DD+ NIA
Sbjct: 118 SNFHKIPFPIAYPH-VNLKQLFSQKQGLRKRHGMAKALTLAGLPLEGTHHRGIDDARNIA 176
Query: 147 RLLAVIMQR 155
+LL I++R
Sbjct: 177 KLLPYILER 185
>gi|389751881|gb|EIM92954.1| exonuclease RNase T and DNA polymerase III [Stereum hirsutum
FP-91666 SS1]
Length = 220
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 55/198 (27%)
Query: 14 YFVVVDFEATCDKKIP----HPQEIIEFPSVIVSGVTGQITVCFQIY------------- 56
+ ++DFEATC+ +P EIIEFP+++ + T ++ F Y
Sbjct: 14 HLAILDFEATCE--LPSGSREEMEIIEFPTILYNLNTKRVQATFHEYVRPVIYPQLTDFC 71
Query: 57 -------------ALFLHDNWQQHM------GV--TPTNFAVVTWSDWDCQVMLESECRF 95
A W +++ GV + A VT DWD + ML +
Sbjct: 72 LDLTGISQETVDAADRFPAVWTRYLAFLKAQGVWENSSALAFVTCGDWDLKTMLPQQLGL 131
Query: 96 --------KNIPKPSYFNRWINLRVPFSK---GDVR----CNLKEAVELGWHGRVHCGLD 140
K+ + F RWIN++ F G R ++ +A+ + GR H G+D
Sbjct: 132 SFADDATKKHETEHVLFKRWINIKRSFHSVYGGKRRPSGLISMLKALAITHQGRHHSGID 191
Query: 141 DSMNIARLLAVIMQRGFK 158
D N+ ++ + + G+K
Sbjct: 192 DCQNLLSIVERMREDGWK 209
>gi|198472654|ref|XP_002133092.1| GA28991 [Drosophila pseudoobscura pseudoobscura]
gi|198139107|gb|EDY70494.1| GA28991 [Drosophila pseudoobscura pseudoobscura]
Length = 83
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 102 SYFNRWINLR---------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVI 152
S FN+WI+ R PFS N E V L + GR H G+DD+ N+ L+ +
Sbjct: 3 SCFNQWIDARDIYKKWYKYRPFSFD----NALEHVMLTFQGRAHSGIDDAKNLGSLICKM 58
Query: 153 MQRGFKFSITKSLTTPQDITQD 174
+ G FSITK LT +++ ++
Sbjct: 59 FRDGAPFSITKDLTPHKELNEN 80
>gi|407410790|gb|EKF33102.1| hypothetical protein MOQ_003039 [Trypanosoma cruzi marinkellei]
Length = 372
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 101 PSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQR 155
P F RW+N+R F+ + ++ + + L +HG H G+DDS NIAR++ +++R
Sbjct: 253 PPIFYRWVNVRHSFAEHFRMRPRKLTDMLKKLGLSFHGHPHSGIDDSRNIARIVIELLKR 312
Query: 156 GFK 158
G++
Sbjct: 313 GYR 315
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 10 QDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
Q F + +V DFEATCD + +P EIIEFP V V ++ F Y
Sbjct: 90 QIFSHLLVCDFEATCDSASVAYPHEIIEFPVVCVDTAELRVVAEFHSY 137
>gi|313215127|emb|CBY42833.1| unnamed protein product [Oikopleura dioica]
Length = 604
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 79 TWSDWDCQVMLESECRFKNIPKPSYFNRWINLRV-----------PFSKGDVRCNLKEAV 127
T DWD L SE + K I P W++LR V L +
Sbjct: 91 TPKDWDISSQLLSETKRKKIEIPEMLKSWVDLRAVSRVYLQSVNKKMGHIPVLRRLFRVL 150
Query: 128 ELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
++ W G+ H G+DD+ N AR LAV M K +T++L
Sbjct: 151 KMEWEGKHHSGIDDARNTAR-LAVKMAANLK--VTRTL 185
>gi|118384040|ref|XP_001025173.1| exonuclease family protein [Tetrahymena thermophila]
gi|89306940|gb|EAS04928.1| exonuclease family protein [Tetrahymena thermophila SB210]
Length = 639
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 43/188 (22%)
Query: 11 DFDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
DF Y +DFE +KK EIIEFP ++ + +I F Y
Sbjct: 412 DFQYLFFIDFECNFFNKKF----EIIEFPLHVIDVNSKEIVDSFVSYVKPSNNITKFITR 467
Query: 58 -------------------LFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNI 98
+ + + ++++ V AV+ D D L +E FK I
Sbjct: 468 LTKITDTQVKNAPILQQVLVNVQNFLEKYLKVGIDKCAVIYDCDSDS-TFLFNETSFKKI 526
Query: 99 PKPSYFNRWINLRVPF-----SKG-DVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVI 152
P F ++I L+ F +K + + +++ + G+ HCG DDSMN A++ +
Sbjct: 527 KVPPIFEKYICLKSVFPVEIANKAPSSLSQMLQILDMKFEGQKHCGADDSMNQAKVGQKL 586
Query: 153 MQRGFKFS 160
+Q G+ FS
Sbjct: 587 LQLGYNFS 594
>gi|340052994|emb|CCC47280.1| putative exonuclease [Trypanosoma vivax Y486]
Length = 381
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 101 PSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQR 155
P F RWI++R F + ++ + + + GR H G+DDS NIAR+L +M+R
Sbjct: 269 PPLFYRWIDVRACFCQHFRYRPRKITDMLKRLGRSFRGRQHSGIDDSRNIARILMELMRR 328
Query: 156 GFKFSITKSLTTPQDITQD 174
G+K + Q + ++
Sbjct: 329 GYKIKHVDKIAYVQGVKEN 347
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 10 QDFDYFVVVDFEATCDKKIPH-PQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQQHM 68
Q F + +V DFEATCD+ H P EIIEFP V+V + F Y +H H
Sbjct: 109 QPFSHILVCDFEATCDESRHHFPHEIIEFPVVVVDTARLCVVAEFHSYVRPVH-----HP 163
Query: 69 GVTP 72
+TP
Sbjct: 164 KLTP 167
>gi|172087346|ref|XP_001913215.1| hypothetical exonuclease containing protein-like protein
[Oikopleura dioica]
gi|42601342|gb|AAS21368.1| hypothetical exonuclease containing protein-like protein
[Oikopleura dioica]
Length = 646
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 79 TWSDWDCQVMLESECRFKNIPKPSYFNRWINLRV-----------PFSKGDVRCNLKEAV 127
T DWD L SE + K I P W++LR V L +
Sbjct: 133 TPKDWDISSQLLSETKRKKIEIPEMLKSWVDLRAVSRVYLQSVNKKMGHIPVLRRLFRVL 192
Query: 128 ELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
++ W G+ H G+DD+ N AR LAV M K +T++L
Sbjct: 193 KMEWEGKHHSGIDDARNTAR-LAVKMAANLK--VTRTL 227
>gi|402225629|gb|EJU05690.1| hypothetical protein DACRYDRAFT_75019 [Dacryopinax sp. DJM-731 SS1]
Length = 497
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 87/251 (34%), Gaps = 94/251 (37%)
Query: 8 KLQDFDYFVVVDFEATCDKKI--PHPQEIIEFPSVIV-------SGVTGQITVCFQIYAL 58
+ Q +D F+++D EATCD+ + +P EIIE+P V++ SG +T F +
Sbjct: 142 RRQPYDAFLLLDVEATCDEGVGFDYPNEIIEWPVVLMRWNEMDTSGRMASLT-PFAEFRS 200
Query: 59 FLHDNW---------------QQHMGVTPT---------------------------NFA 76
F+ W Q H+ PT +
Sbjct: 201 FVRPTWATQLTPFCTSLTGITQSHINNAPTFPEVLAQFREFLVLHGLLDPETDEQLVRYT 260
Query: 77 VVTWSDWDCQVMLESECRFKNIPKPSYFNRWIN-----LRVPF----------------- 114
VT WD + L +C +IP P++ + + +RV
Sbjct: 261 FVTDGPWDLRDFLVKQCWLSDIPVPAWVGQEVVDVRQLVRVALRTFDETDPDTEPEPEPE 320
Query: 115 --------------------SKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQ 154
+ + C L + GR H G+DD+ N+AR+L + +
Sbjct: 321 PEPAQPEGEPERERERGTKHTGLSLPCQLHNLSLPPFQGRQHSGIDDARNVARVLQELAR 380
Query: 155 RGFKFSITKSL 165
RG+ SL
Sbjct: 381 RGWVVERNSSL 391
>gi|14581470|gb|AAK38347.1| prion interactor PINT1 [Mus musculus]
Length = 125
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 30 HPQEI---IEFPSVIVSGVTGQITVCFQIYALFLHDNWQQHMGVTPTNFA--VVTWSDWD 84
HPQ E +I + V GQ ++ L D W G+ N VT DWD
Sbjct: 1 HPQLTPFCTELTGIIQAMVDGQPSL---QQVLERVDEWMAKEGLLDPNVKSIFVTCGDWD 57
Query: 85 CQVMLESECRFKNIPKPSYFNRWINL-RVPFSK 116
+VML +C + +P YF +WINL +VP S
Sbjct: 58 LKVMLPGQCHYLGLPVADYFKQWINLKKVPLSS 90
>gi|71417701|ref|XP_810631.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70875192|gb|EAN88780.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 379
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 101 PSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQR 155
P F RW+N+R F+ + ++ + L +HG H G+DDS NIAR++ +++R
Sbjct: 253 PPLFYRWVNVRHSFAEHFRMRPRKLNDMLRKLGLSFHGHPHSGIDDSRNIARIVIELLKR 312
Query: 156 GFK 158
G++
Sbjct: 313 GYR 315
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 10 QDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
Q F + +V DFEATCD + +P EIIEFP V V ++ F Y
Sbjct: 90 QIFSHLLVCDFEATCDSASVAYPHEIIEFPVVCVDTAELRVVAEFHSY 137
>gi|407832341|gb|EKF98412.1| hypothetical protein TCSYLVIO_010686 [Trypanosoma cruzi]
Length = 379
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 101 PSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQR 155
P F RW+N+R F+ + ++ + L +HG H G+DDS NIAR++ +++R
Sbjct: 253 PPLFYRWVNVRHSFAEHFRMRPRKLNDMLRKLGLSFHGHPHSGIDDSRNIARIVIELLKR 312
Query: 156 GFK 158
G++
Sbjct: 313 GYR 315
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 10 QDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
Q F + +V DFEATCD + +P EIIEFP V V ++ F Y
Sbjct: 90 QIFSHLLVCDFEATCDSASVAYPHEIIEFPVVCVDTAELRVVAEFHSY 137
>gi|71407241|ref|XP_806103.1| exonuclease [Trypanosoma cruzi strain CL Brener]
gi|70869745|gb|EAN84252.1| exonuclease, putative [Trypanosoma cruzi]
Length = 289
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 101 PSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQR 155
P F RW+N+R F+ + ++ + L +HG H G+DDS NIAR++ +++R
Sbjct: 163 PPLFYRWVNVRHSFAEHFRMRPRKLNDMLRKLGLSFHGHPHSGIDDSRNIARIVIELLKR 222
Query: 156 GFK 158
G++
Sbjct: 223 GYR 225
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 12 FDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIYA 57
F + +V DFEATCD + +P EIIEFP V V ++ F Y
Sbjct: 2 FSHLLVCDFEATCDSASVAYPLEIIEFPVVCVDTAELRVVAEFHSYV 48
>gi|268578589|ref|XP_002644277.1| C. briggsae CBR-CRN-4 protein [Caenorhabditis briggsae]
Length = 298
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 57/206 (27%)
Query: 12 FDYFVVVDFEATCD-KKIPHPQEIIEFPSV--------IVSGVT---------------- 46
FD+ +++DFE T K +P EII+F V ++ G+
Sbjct: 8 FDHLLILDFETTSGGKNRDYPTEIIQFSVVPLDVKAKTMLEGIAFNKFVRPVINPTLSEH 67
Query: 47 -GQITVCFQ-----------IYALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECR 94
++T Q +Y FL W Q G +FA+V+ S D + + + R
Sbjct: 68 CAELTGIKQESLNSADTFLVVYKQFLE--WLQKNGFQERHFAIVSDSRQDMWRIAQYQFR 125
Query: 95 FKNIPKPSYFNRWINLRVPFSKGDVRCNLKE---------------AVELGWHGRVHCGL 139
PS F +WIN++ F G + KE +EL G+ H L
Sbjct: 126 LVRETMPSMFRQWINIKRTFDDG-LEDGQKEKLVGTTNIEKMSNYLGIELS--GKAHDAL 182
Query: 140 DDSMNIARLLAVIMQRGFKFSITKSL 165
D +NIA + I++ G +I + L
Sbjct: 183 SDCLNIAAITHKILEIGCPVTINEML 208
>gi|409051696|gb|EKM61172.1| hypothetical protein PHACADRAFT_247611, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 136
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 25/118 (21%)
Query: 78 VTWSDWDCQVMLESECRFKNIPKP--------SYFNRWINLRVPFSK--GDVRCNLK--- 124
VT DWD + ML + + +NRWIN++ PF K R N+
Sbjct: 19 VTCGDWDLKTMLPKQLSLVEADHGLDESGRVVAPYNRWINIKTPFKKRFNMTRFNVSMPA 78
Query: 125 --EAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWN 180
+ ++L GR H G+DD NI R++ ++ G+ + TQ S TW+
Sbjct: 79 MLKKLQLELEGRHHSGIDDCKNILRIIEKMIATGWD----------PNTTQASASTWS 126
>gi|261327263|emb|CBH10239.1| exonuclease, putative [Trypanosoma brucei gambiense DAL972]
Length = 329
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 101 PSYFNRWINLRVPFSKGDVR-----CNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQR 155
P F RW+++R F + + ++ + L + G+ H G+DDS NIAR+L +M+R
Sbjct: 225 PPLFYRWVDVRKCFKQHFNKWPRKLVDMLRTLRLDFEGKQHSGIDDSRNIARILIELMRR 284
Query: 156 GF 157
GF
Sbjct: 285 GF 286
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 10 QDFDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYA 57
Q F + +V DFEATCD +P EIIEFP V + T Q+ V + ++
Sbjct: 60 QPFSHLLVCDFEATCDADSAGLYPHEIIEFPVVCID--TAQLAVVAEFHS 107
>gi|72387361|ref|XP_844105.1| exonuclease [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62360613|gb|AAX81024.1| exonuclease, putative [Trypanosoma brucei]
gi|70800637|gb|AAZ10546.1| exonuclease, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 291
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 101 PSYFNRWINLRVPFSKGDVR-----CNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQR 155
P F RW+++R F + + ++ + L + G+ H G+DDS NIAR+L +M+R
Sbjct: 187 PPLFYRWVDVRKCFKQHFNKWPRKLVDMLRTLRLDFEGKQHSGIDDSRNIARILIELMRR 246
Query: 156 GF--KFSITKSLTTPQDI 171
GF K T P D+
Sbjct: 247 GFFVKRVSTIEYKCPMDV 264
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 10 QDFDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIYA 57
Q F + +V DFEATCD +P EIIEFP V + T Q+ V + ++
Sbjct: 22 QPFSHLLVCDFEATCDADSAGLYPHEIIEFPVVCID--TAQLAVVAEFHS 69
>gi|186682035|ref|YP_001865231.1| exonuclease [Nostoc punctiforme PCC 73102]
gi|186464487|gb|ACC80288.1| Exonuclease, RNase T and DNA polymerase III [Nostoc punctiforme PCC
73102]
Length = 187
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 39/176 (22%)
Query: 14 YFVVVDFEAT-CDKK-IP-HPQEIIEFPSVIVSGVTGQITVCFQIYA------------L 58
Y+++VD EAT CDKK IP H EIIE +V+++ T +I FQ +
Sbjct: 8 YYLIVDLEATCCDKKTIPRHEMEIIEIGAVMLNRATWEIDSEFQQFIQPVRHPQLTDFCT 67
Query: 59 FLHDNWQQHMGVTPT----------------NFAVVTWSDWDCQVMLESECRFKNIPKPS 102
L QQ + P N +W ++D + ++ +C F N P
Sbjct: 68 KLTSIQQQDVDEAPKFIEAISRFKEWICSFPNHIFCSWGNYDKKQFIQ-DCAFHNFAYP- 125
Query: 103 YFNRWINLRVPFSKG---DVRCNLKEAV-ELG--WHGRVHCGLDDSMNIARLLAVI 152
+ + IN++ FS+ R + +A+ ELG G H G+DD+ NIA + I
Sbjct: 126 FTSEHINIKEEFSEYLGVSKRFGMAQALNELGIELKGTHHRGIDDAHNIASIYRQI 181
>gi|440790416|gb|ELR11699.1| three prime histone mRNA exonuclease 1, putative [Acanthamoeba
castellanii str. Neff]
Length = 256
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 73/216 (33%), Gaps = 80/216 (37%)
Query: 7 QKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA--------- 57
+K Q D+F+V+D E QEI+EFP IV+ T ++ F Y
Sbjct: 31 RKEQIVDFFLVLDLEGK--------QEILEFPVAIVNVKTLEVEDFFHRYVRPVTFSDEQ 82
Query: 58 ----------------------------LFLHDNWQQHMGVTPT---------------- 73
L ++W H G+ +
Sbjct: 83 LAQYINGKYGKFGLTEKWFESAMPFTDVLVQFNDWLGHHGLLHSILRSEDGEETGEERQA 142
Query: 74 --NFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDVRCNLKEAVELGW 131
+F VT +WD + + +C P YF+ W+NL+ DV N + LG
Sbjct: 143 AYSFLFVTCGNWDIKTQIPRQCAISKFDMPGYFHEWVNLK------DVYLNFYKHKALGM 196
Query: 132 -----------HGRVHCGLDDSMNIARLLAVIMQRG 156
G H G DD NI +++ ++ G
Sbjct: 197 RSMLSGLGIQLEGDHHSGKDDVHNICKIVMRMVNDG 232
>gi|434384994|ref|YP_007095605.1| inhibitor of the KinA pathway to sporulation, predicted exonuclease
[Chamaesiphon minutus PCC 6605]
gi|428015984|gb|AFY92078.1| inhibitor of the KinA pathway to sporulation, predicted exonuclease
[Chamaesiphon minutus PCC 6605]
Length = 192
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 39/182 (21%)
Query: 12 FDYFVVVDFEATC--DKKIP-HPQEIIEFPSVIVSGVTGQITVCFQIYA----------- 57
+ + +VVD EATC + IP H E IE +V+VS I FQ +
Sbjct: 9 YQHILVVDLEATCCDLQSIPRHQMETIEIGAVMVSTDNLAIVDEFQTFIKPIRHPILTEF 68
Query: 58 -LFLHDNWQQHMGVTPTNFAVV----------------TWSDWD-CQVMLESECRFKNIP 99
L L QQ + PT + +W D+D Q+ +S+ ++P
Sbjct: 69 CLQLTSITQQQVNTAPTFPDAIELWQPWLSQFDKTIFGSWGDYDRKQLQQDSKHHRIDLP 128
Query: 100 KPSYFNRWINLRVPFSKG---DVRCNLKEA---VELGWHGRVHCGLDDSMNIARLLAVIM 153
P + INL+ FS + R + +A V + G H G+DD+ NI++LL I+
Sbjct: 129 YPVS-SHHINLKELFSTAQGLNKRYGMAQALNLVNIDLTGTHHRGIDDARNISKLLPFIL 187
Query: 154 QR 155
R
Sbjct: 188 GR 189
>gi|384490325|gb|EIE81547.1| hypothetical protein RO3G_06252 [Rhizopus delemar RA 99-880]
Length = 147
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 78 VTWSDWDCQVMLESECRFKNI-PKPSYFNR-WINLRVPF------SKGDVRCNLKEAVEL 129
VT +D + + + NI P+P+YFN WIN+R F ++ ++ +E+
Sbjct: 42 VTDGPFDIRDFITKQITHSNIDPRPAYFNLPWINIRKLFKDFYHQTQSKNIASMLSHLEM 101
Query: 130 GWHGRVHCGLDDSMNIARLLAVIMQRG 156
+ GR H GLDD+ N+A + + + G
Sbjct: 102 SFEGREHSGLDDARNLAYIAKRMFEDG 128
>gi|341874213|gb|EGT30148.1| CBN-CRN-4 protein [Caenorhabditis brenneri]
Length = 298
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 47/189 (24%)
Query: 12 FDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQI--TVCF--------------- 53
F + +++DFE T ++ +P E+I+F V++ T I V F
Sbjct: 8 FTHLLILDFETTSEEANCDYPFEVIQFSVVVLDVKTNTILENVSFNKYVRPVINPILSKH 67
Query: 54 -------------------QIYALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECR 94
++Y F+ NW G FAVV S D + + + +
Sbjct: 68 CADFTGIAQESLDSAATFREVYNQFV--NWLNTNGFAERQFAVVCDSRQDMWRIAQYQFK 125
Query: 95 FKNIPKPSYFNRWINLRVPFSKGDVRCNLKEAVELGWHGRV--HCGLD------DSMNIA 146
N PS+F ++++L F R KE +E + G++ + GLD DS+N
Sbjct: 126 LINATLPSFFRQYVSLWRAFEAEQDRSGRKELLEKTYIGKMAEYYGLDTTGRAHDSLNDC 185
Query: 147 RLLAVIMQR 155
+ +A I+Q+
Sbjct: 186 KTIATIVQK 194
>gi|389593757|ref|XP_003722127.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438625|emb|CBZ12384.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 502
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 106 RWINLRVPFS-----KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFS 160
R+IN+R +S + ++ + + + + GR H G+DD+ NIAR+LA + RG++
Sbjct: 388 RYINVRHSYSDHFKCRQAKLTHMLKKMSMSFEGRRHSGIDDTRNIARVLAELFARGYRVH 447
Query: 161 ITKSLTTPQDITQDSVMTWNRHHQFLVRQRKCTFQ-HTSR 199
++T D+ + NR Q L+ + T + HTS+
Sbjct: 448 HVSTITYAH--RGDAFLESNRAAQELLSEFGETDETHTSK 485
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 3 PFLPQKLQDFDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
PF Q F + +V DFEATC + +P EIIEFP V++ T +I F Y
Sbjct: 211 PFKRLLAQPFSHVLVCDFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFHRY 265
>gi|54301691|ref|YP_131684.1| hypothetical protein PBPRB0011 [Photobacterium profundum SS9]
gi|46915111|emb|CAG21884.1| conserved hypothetical protein [Photobacterium profundum SS9]
Length = 191
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 67/177 (37%), Gaps = 40/177 (22%)
Query: 8 KLQDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQ 65
K+ +F+ V D E C D + P EIIE + TG+I Q Y HD
Sbjct: 4 KVMNFNRIVCFDLEMCCWNDGRDPKTGEIIEIGLAELDLDTGEIVRRTQHYVKPEHDEIS 63
Query: 66 QH----MGVTP------------------TNFA-----VVTWSDWDCQVMLESECRFKNI 98
+ G+ P + F W D +L +EC K +
Sbjct: 64 EFCTELTGIKPQVIHKNGKPLAEILRSMESKFGGKHKIYAAWGHDD--RILHAECAAKGL 121
Query: 99 PKPSYFNRWINL----RVPFSKGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARL 148
P F +INL R+ RC + A+E L W GR H G D+ N+ARL
Sbjct: 122 KVP--FTEYINLAMIFRLQRHVKKKRCGQRAAMEIAGLEWEGRQHSGYVDAYNLARL 176
>gi|268578587|ref|XP_002644276.1| Hypothetical protein CBG14047 [Caenorhabditis briggsae]
Length = 292
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 55 IYALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF 114
+Y FL W Q G +FA+V+ S D + + + R PS F +WIN++ F
Sbjct: 82 VYKQFL--KWLQKNGFQERHFAIVSDSRQDMWRIAQYQFRLVQETMPSMFRQWINIKRTF 139
Query: 115 SKGDV---------RCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSIT 162
G R N+++ + + + GR H L D + +A + I++ G +I
Sbjct: 140 DDGLEDGQKNKLVGRSNMEKMLNYLGIEFSGRAHDALSDCLTLAAITQKILEMGCPVTIN 199
Query: 163 K 163
+
Sbjct: 200 E 200
>gi|401416028|ref|XP_003872509.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488733|emb|CBZ23980.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 502
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 3 PFLPQKLQDFDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
PF Q F + +V DFEATC + +P EIIEFP V++ T +I F Y
Sbjct: 211 PFKRLLAQPFSHVLVCDFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFHRY 265
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 77 VVTWSDWDCQ-VMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELG 130
+ T WD + M E + P R+IN+R +S + ++ + + +
Sbjct: 358 MATDGPWDMRRFMHECSVLRDGVAFPPVCYRYINVRHSYSDHFKCRQAKLTHMLKKMSMS 417
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFK 158
+ GR H G+DD+ NIAR+LA + RG++
Sbjct: 418 FEGRRHSGIDDTRNIARVLAELFARGYR 445
>gi|154340886|ref|XP_001566396.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063719|emb|CAM39904.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 508
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 3 PFLPQKLQDFDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
PF Q F + +V DFEATC + +P EIIEFP V++ T +I F Y
Sbjct: 217 PFKRLLAQPFSHVLVCDFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFHRY 271
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 77 VVTWSDWDCQ-VMLESECRFKNIPKPSYFNRWINLRVPFSK----GDVR-CNLKEAVELG 130
+ T WD + M E + P R+IN+R +S VR ++ + + +
Sbjct: 364 MATDGPWDMRRFMHECSVLRDGVDFPPVCYRYINIRHSYSHHFKCRQVRLTHMLKQMSMS 423
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFK 158
+ GR H G+DD+ NIAR+LA + RG++
Sbjct: 424 FEGRRHSGIDDTRNIARVLAELFARGYR 451
>gi|146092927|ref|XP_001466575.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134070938|emb|CAM69614.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 502
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 3 PFLPQKLQDFDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
PF Q F + +V DFEATC + +P EIIEFP V++ T +I F Y
Sbjct: 211 PFKRLLAQPFSHVLVCDFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFHRY 265
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 77 VVTWSDWDCQ-VMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELG 130
+ T WD + M E + P R+IN+R +S + ++ + + +
Sbjct: 358 MATDGPWDMRRFMHECSVLRDGVDFPPVCYRYINVRHSYSDHFKCRQAKLTHMLKKMSMS 417
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFK 158
+ GR H G+DD+ NIAR+LA + RG++
Sbjct: 418 FEGRRHSGIDDTRNIARVLAELFARGYR 445
>gi|398018615|ref|XP_003862472.1| hypothetical protein, conserved [Leishmania donovani]
gi|322500702|emb|CBZ35779.1| hypothetical protein, conserved [Leishmania donovani]
Length = 502
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 3 PFLPQKLQDFDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
PF Q F + +V DFEATC + +P EIIEFP V++ T +I F Y
Sbjct: 211 PFKRLLAQPFSHVLVCDFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFHRY 265
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 77 VVTWSDWDCQ-VMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELG 130
+ T WD + M E + P R+IN+R +S + ++ + + +
Sbjct: 358 MATDGPWDMRRFMHECSVLRDGVDFPPVCYRYINVRHSYSDHFKCRQAKLTHMLKKMSMS 417
Query: 131 WHGRVHCGLDDSMNIARLLAVIMQRGFK 158
+ GR H G+DD+ NIAR+LA + RG++
Sbjct: 418 FEGRRHSGIDDTRNIARVLAELFARGYR 445
>gi|323492478|ref|ZP_08097626.1| hypothetical protein VIBR0546_15616 [Vibrio brasiliensis LMG 20546]
gi|323313265|gb|EGA66381.1| hypothetical protein VIBR0546_15616 [Vibrio brasiliensis LMG 20546]
Length = 176
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 72/178 (40%), Gaps = 38/178 (21%)
Query: 11 DFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQ--- 65
+ + V D E C + + EIIE + V+G+I Q Y HD
Sbjct: 2 NHNRVVCFDLEMCCWNENGVGTTGEIIEVGLAEIDLVSGEIVKRAQYYVKPEHDEVSLFC 61
Query: 66 -QHMGVTP------------------TNF--AVVTWSDW--DCQVMLESECRFKNIPKPS 102
Q G+TP NF A ++ W D +V+ E EC+ K I P
Sbjct: 62 SQLTGITPRKIEKQGRPLAEVIKSMVKNFGGANKIYAAWGRDDRVLRE-ECQAKGIDMP- 119
Query: 103 YFNRWINL----RVPFSKGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVIM 153
FN +INL R+ D R K A E + W GR H G D+ N+A+L ++
Sbjct: 120 -FNEFINLATLYRIQNRLKDKRIGHKAAQESKGIEWEGRQHSGYVDAYNLAKLALTML 176
>gi|125534583|gb|EAY81131.1| hypothetical protein OsI_36315 [Oryza sativa Indica Group]
Length = 219
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 208 RYCFCGAKSFKKIIRKPGPKCGSFFFGCGN 237
RYC CG +S +K +R+PGP G FFGCG+
Sbjct: 68 RYCHCGVESREKEVRRPGPTQGRHFFGCGS 97
>gi|196018082|ref|XP_002118730.1| hypothetical protein TRIADDRAFT_34627 [Trichoplax adhaerens]
gi|190578360|gb|EDV18784.1| hypothetical protein TRIADDRAFT_34627 [Trichoplax adhaerens]
Length = 87
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 13 DYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQITVCFQIY 56
DY+ V+DFEATC++ P + EIIEFP+++V+ T + F Y
Sbjct: 19 DYYCVIDFEATCEEVNPRKYKHEIIEFPALMVNARTLAVESQFHFY 64
>gi|342180404|emb|CCC89881.1| putative exonuclease [Trypanosoma congolense IL3000]
Length = 385
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 9 LQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
LQ F + +V DFEATCD + +P EIIEFP V V ++ F Y
Sbjct: 111 LQPFSHLLVCDFEATCDDYNVDYPHEIIEFPVVCVDTQQLRVVAEFHSY 159
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 101 PSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQR 155
P F RW+N+R F+ + ++ + + + G+ H G+DD+ NIAR+L +M+R
Sbjct: 273 PPLFYRWVNIRRCFACYFHTRPRKLTDMLKVLGFPFVGQQHSGIDDARNIARILIELMRR 332
Query: 156 GFKFSITKSLT 166
G + +++
Sbjct: 333 GCRIKDVSTIS 343
>gi|71396663|ref|XP_802406.1| exonuclease [Trypanosoma cruzi strain CL Brener]
gi|70862768|gb|EAN80960.1| exonuclease, putative [Trypanosoma cruzi]
Length = 310
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 10 QDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
Q F + +V DFEATCD + +P EIIEFP V V ++ F Y
Sbjct: 90 QIFSHLLVCDFEATCDSASVAYPHEIIEFPVVCVDTAELRVVAEFHSY 137
>gi|59712121|ref|YP_204897.1| exonuclease KapD [Vibrio fischeri ES114]
gi|197336268|ref|YP_002156326.1| exonuclease KapD [Vibrio fischeri MJ11]
gi|423686277|ref|ZP_17661085.1| exonuclease KapD [Vibrio fischeri SR5]
gi|59480222|gb|AAW86009.1| exonuclease KapD [Vibrio fischeri ES114]
gi|197317758|gb|ACH67205.1| exonuclease KapD [Vibrio fischeri MJ11]
gi|371494345|gb|EHN69943.1| exonuclease KapD [Vibrio fischeri SR5]
Length = 176
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 73 TNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINL----RVPFSKGDVRCNLKEAVE 128
TN W D Q+ LE+EC+ K I P FN ++NL R+ K + R + A+E
Sbjct: 93 TNKIYAAWGH-DEQI-LEAECKAKGIEVP--FNEFLNLATIYRIRSRKKNERMGQRRAME 148
Query: 129 ---LGWHGRVHCGLDDSMNIARLLAVIM 153
+ W GR H G D+ N+A+L I+
Sbjct: 149 ELNIEWEGRQHSGYVDAYNLAQLALKIL 176
>gi|326426891|gb|EGD72461.1| hypothetical protein PTSG_11592 [Salpingoeca sp. ATCC 50818]
Length = 978
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 45/152 (29%)
Query: 10 QDFDYFVVVDFEATCDKKIPH-PQEIIEFPSVIVSGVTGQITVCFQIY------------ 56
+D + VVDFEATC++ + P EIIEFP VI+ +I Q Y
Sbjct: 30 KDATFICVVDFEATCEEDDANFPHEIIEFPLVIIDVHRKEIVEKQQFYCRPVFNPILSPF 89
Query: 57 ---------------ALFLH---------DNWQQHMGVTPTNFAVVTWSD--WDCQVMLE 90
A F H D ++ H ++ SD WD + +
Sbjct: 90 CTQLTGIKQESVDSAAEFPHVLDQVMAILDKYRSH----DAGHKLLLASDGPWDFRNFFQ 145
Query: 91 SECRFKNIPKPSYFNRWINLRVPFS--KGDVR 120
+CR ++P P+ ++W+++R F +G V+
Sbjct: 146 WQCRASSVPAPALMHQWLDIRKAFRACRGGVK 177
>gi|90409780|ref|ZP_01217797.1| hypothetical protein P3TCK_03416 [Photobacterium profundum 3TCK]
gi|90329133|gb|EAS45390.1| hypothetical protein P3TCK_03416 [Photobacterium profundum 3TCK]
Length = 186
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 65/174 (37%), Gaps = 40/174 (22%)
Query: 11 DFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQQH- 67
+F+ V D E C D + P EIIE + TG+I Q Y HD +
Sbjct: 2 NFNRIVCFDLEMCCWNDGRDPKTGEIIEIGLAELDLDTGEIVRRTQHYVKPEHDEISEFC 61
Query: 68 ---MGVTP------------------TNFA-----VVTWSDWDCQVMLESECRFKNIPKP 101
G+ P + F W D +L +EC K + P
Sbjct: 62 TELTGIKPQVIHKNGKPLAEILRSMESKFGGKHKIYAAWGHDD--RILHAECAAKGLKVP 119
Query: 102 SYFNRWINL----RVPFSKGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARL 148
F +INL R+ RC + A+E L W GR H G D+ N+ARL
Sbjct: 120 --FTEYINLAMIFRLQRHVKKKRCGQRAAMEIAGLEWEGRQHSGYVDAYNLARL 171
>gi|118346813|ref|XP_977115.1| exonuclease family protein [Tetrahymena thermophila]
gi|89288652|gb|EAR86640.1| exonuclease family protein [Tetrahymena thermophila SB210]
Length = 1363
Score = 41.6 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 46/203 (22%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY---ALFLHDN--- 63
+ D V+DFE C++ EIIEFP +++ +I F Y F N
Sbjct: 703 KKLDMLFVIDFE--CNQP---GYEIIEFPVLVIDLKKERIIDTFHTYVKPTTFPKINPYI 757
Query: 64 ------WQQHMGVTPTNFAVVT--------WSDW----------DCQVMLESECRFKN-I 98
Q+ + P+ V+ + D+ DC M +SE KN I
Sbjct: 758 SKITGIQQKDVANAPSFVQVIQKVEAFLQKYKDYEGCILYDCDSDCNYM-KSEFINKNYI 816
Query: 99 PKPSYFNRWINLRVPF----SKGDVRCNLKEA---VELGWHGRVHCGLDDSMNIARLLAV 151
P F +INLR F S G + +L A +++ + G H G+DD+ N A +
Sbjct: 817 PTSDVFFSYINLRNVFPLEISGGVINKSLSHAQQVLQMEFQGCKHKGIDDARNQALVCIE 876
Query: 152 IMQRGFKFSITKSLTTPQDITQD 174
+++RG+ F T+ + PQ + QD
Sbjct: 877 LVKRGYSF--TQFMIQPQFLKQD 897
>gi|157423306|gb|AAI53553.1| Eri1 protein [Danio rerio]
Length = 157
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 12 FDYFVVVDFEATCDKKIP--HPQEIIEFPSVIVSGVTGQI 49
FDY VVDFEATC++ P + EIIEFP V++ T +I
Sbjct: 115 FDYICVVDFEATCEENNPPDYLHEIIEFPMVLIDTHTLEI 154
>gi|390594208|gb|EIN03621.1| hypothetical protein PUNSTDRAFT_146951 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 285
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 82/230 (35%), Gaps = 76/230 (33%)
Query: 10 QDFDYFVVVDFEATCDK--KIPHPQEIIEFPSVIV--------SGVTGQITVCFQIYALF 59
Q +D +V+D EATC P EIIE+P ++ SGV + + + A F
Sbjct: 34 QTYDALLVIDVEATCQAGTDFAWPNEIIEWPVCLMRWMDKDGPSGVAKDLRIVDEFRA-F 92
Query: 60 LHDNWQQHMGVTPTNFAVVTWSD------------------------------------- 82
+ W+ + T + +D
Sbjct: 93 VKPTWRPVLSKFCTELTGIEQADVDSAPTFPEVLASFRGFLVKNGLLDAETDERLCRFCF 152
Query: 83 -----WDCQVMLESECRFKNIPKPSYFN-RWINLRVPFSKGDVRCNLKEAVE-------- 128
WD + L +C I P + +++ R+ +G VR + +
Sbjct: 153 SSDGPWDLRDFLVKQCFISKIDIPPWIPIDFLDTRI-VVQGHVRKDFPDGSRVHLNKRAR 211
Query: 129 ----------LG---WHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
LG + GR HCG+DD+ N+AR+LA + +RG K S+
Sbjct: 212 SPSIVAQLRGLGLEPFAGRQHCGIDDARNVARILAELGRRGAKLQPNSSI 261
>gi|261253256|ref|ZP_05945829.1| hypothetical protein VIA_003281 [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|417954741|ref|ZP_12597772.1| hypothetical protein VIOR3934_04644 [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260936647|gb|EEX92636.1| hypothetical protein VIA_003281 [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342814712|gb|EGU49647.1| hypothetical protein VIOR3934_04644 [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 176
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 68/168 (40%), Gaps = 38/168 (22%)
Query: 16 VVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQ----QHMG 69
V D E C + + EIIE + V G+I Q Y HD Q G
Sbjct: 7 VCFDLEMCCWNENGVGTTGEIIEVGLAEIDLVNGEIVKRAQYYVKPEHDEVSLFCSQLTG 66
Query: 70 VTP------------------TNF--AVVTWSDW--DCQVMLESECRFKNIPKPSYFNRW 107
+TP NF A ++ W D +++++ EC+ K I P FN +
Sbjct: 67 ITPRKVEKQGRPLEEVLKSMVKNFGGANKIYAAWGRDDRILIK-ECQDKGIEMP--FNEF 123
Query: 108 INL----RVPFSKGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARL 148
INL R+ D R K A E + W GR H G D+ N+A+L
Sbjct: 124 INLATLYRIQNRLKDKRIGHKAAQEAKGIEWEGRQHSGYVDAYNLAKL 171
>gi|262165616|ref|ZP_06033353.1| hypothetical protein VMA_002063 [Vibrio mimicus VM223]
gi|262171593|ref|ZP_06039271.1| hypothetical protein VII_002415 [Vibrio mimicus MB-451]
gi|424810199|ref|ZP_18235562.1| hypothetical protein SX4_0820 [Vibrio mimicus SX-4]
gi|261892669|gb|EEY38655.1| hypothetical protein VII_002415 [Vibrio mimicus MB-451]
gi|262025332|gb|EEY44000.1| hypothetical protein VMA_002063 [Vibrio mimicus VM223]
gi|342322570|gb|EGU18359.1| hypothetical protein SX4_0820 [Vibrio mimicus SX-4]
Length = 156
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 73 TNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINL----RVPFSKGDVRCNLKEAVE 128
+N +W D ++L +ECR K IP P F ++NL R+ D R + A E
Sbjct: 73 SNKIYASWGRDD--LILINECREKGIPVP--FQEFLNLATLYRIQHRLKDKRIGHRAAQE 128
Query: 129 ---LGWHGRVHCGLDDSMNIARLLAVIM 153
+ W GR H G D+ N+A+L ++
Sbjct: 129 SQGIEWEGRQHSGYVDAYNLAKLALTML 156
>gi|390597111|gb|EIN06511.1| hypothetical protein PUNSTDRAFT_53952 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 77
Score = 40.4 bits (93), Expect = 0.77, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 12 FDYFVVVDFEATCDKKIPH-PQEIIEFPSVI 41
+Y ++DFEATCD K P QEIIEFP+++
Sbjct: 8 LEYLFILDFEATCDDKEPKITQEIIEFPTLV 38
>gi|442610054|ref|ZP_21024779.1| Inhibitor of the KinA pathway to sporulation,predicted exonuclease
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441748273|emb|CCQ10841.1| Inhibitor of the KinA pathway to sporulation,predicted exonuclease
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 151
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 74 NFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDV---RCNLKEAVELG 130
N+ +W ++D Q E +C F N+P P +N++ FSK R + A++L
Sbjct: 55 NYLFCSWGEYDKQ-QFEQDCAFHNVPYPIPAPH-LNIKKEFSKIQKVRKRQGMAGALKLA 112
Query: 131 ---WHGRVHCGLDDSMNIARLLAVIMQRGF 157
G H G+DD+ N+ +L+ +M R F
Sbjct: 113 KIPHTGSHHRGIDDANNMIKLMPYVMGRVF 142
>gi|170094696|ref|XP_001878569.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647023|gb|EDR11268.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 284
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 125 EAVEL-GWHGRVHCGLDDSMNIARLLAVIMQRGF 157
+A+EL G+ GR H G+DDS NIAR++A + +RG
Sbjct: 222 QALELPGFEGRQHSGIDDSRNIARIVAELARRGI 255
>gi|158339338|ref|YP_001520515.1| exonuclease [Acaryochloris marina MBIC11017]
gi|158309579|gb|ABW31196.1| exonuclease [Acaryochloris marina MBIC11017]
Length = 159
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 16/148 (10%)
Query: 12 FDYFVVVDFEATC--DKKIPHPQ-EIIEFPSVIVSGVTGQITVCFQIYAL-FLHDNW--- 64
+DY+++VD EATC IPH + E IE +VI+ V +I F ++ H N
Sbjct: 8 YDYYLIVDLEATCCNTFSIPHKETETIEIGAVIIESVGLEIIDEFTVFIKPIRHPNLTDF 67
Query: 65 --------QQHMGVTPT-NFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS 115
Q + PT AV T+ W Q C + + K ++P+
Sbjct: 68 CTELTTIKQTDLEDAPTFPQAVGTFKRWFEQYENSVFCSWGDYDKNQLERESKYHKIPYP 127
Query: 116 KGDVRCNLKEAVELGWHGRVHCGLDDSM 143
G NLK+ L + H G+ ++
Sbjct: 128 MGGEHFNLKKQFSLALRTKKHYGMARAL 155
>gi|312883579|ref|ZP_07743304.1| hypothetical protein VIBC2010_12209 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368802|gb|EFP96329.1| hypothetical protein VIBC2010_12209 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 176
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 68/179 (37%), Gaps = 40/179 (22%)
Query: 11 DFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQQH- 67
+ + V D E C + I EIIE + +G+I Q Y D Q
Sbjct: 2 NHNRVVCFDLEMCCWNENGIGRTGEIIEIGLAEIDLTSGEIVKRAQYYVKPEADEVSQFC 61
Query: 68 ---MGVTP-----------------------TNFAVVTWSDWDCQVMLESECRFKNIPKP 101
G++P +N +W D V+L++EC K + P
Sbjct: 62 TELTGISPRKIEKQGRSLGEVLNSMKKNFGGSNKIYASWGRDD--VILQNECAKKGLEMP 119
Query: 102 SYFNRWINL----RVPFSKGDVRCNLKEAVELG---WHGRVHCGLDDSMNIARLLAVIM 153
F +INL R+ D R K A E+ W GR H G D+ N+A+L V++
Sbjct: 120 --FREFINLATLFRIQNRLKDKRVGHKVAQEMKGITWEGRQHSGYVDAYNLAKLALVML 176
>gi|343497491|ref|ZP_08735557.1| hypothetical protein VINI7043_25482 [Vibrio nigripulchritudo ATCC
27043]
gi|342818231|gb|EGU53100.1| hypothetical protein VINI7043_25482 [Vibrio nigripulchritudo ATCC
27043]
Length = 176
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 73 TNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINL----RVPFSKGDVRCNLKEAVE 128
N +W D ++L++EC K I P F +INL RV D R K A E
Sbjct: 93 ANKIYASWGRDD--LILKAECESKEIDLP--FKEFINLATLYRVQNRLKDKRIGHKAAQE 148
Query: 129 ---LGWHGRVHCGLDDSMNIARLLAVIM 153
+ W GR H G D+ N+A+L V++
Sbjct: 149 EKGIEWEGRQHSGFVDAYNLAKLALVML 176
>gi|343501087|ref|ZP_08738969.1| hypothetical protein VITU9109_23160 [Vibrio tubiashii ATCC 19109]
gi|418478872|ref|ZP_13047965.1| hypothetical protein VT1337_10692 [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
gi|342818964|gb|EGU53813.1| hypothetical protein VITU9109_23160 [Vibrio tubiashii ATCC 19109]
gi|384573422|gb|EIF03916.1| hypothetical protein VT1337_10692 [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
Length = 176
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 64/174 (36%), Gaps = 40/174 (22%)
Query: 16 VVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQ----QHMG 69
V D E C + + EIIE + V G+I Q Y D Q G
Sbjct: 7 VCFDLEMCCWNEGGVGTTGEIIEVGLAEIDLVKGEIVKRAQYYVKPETDEVSLFCSQLTG 66
Query: 70 VTP-----------------------TNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNR 106
+TP TN W D ++L+ EC K I P FN
Sbjct: 67 ITPRKIEKQGRPLEEVLKSMVKNFGGTNKIYAAWGRDD--LVLKQECLDKGIDAP--FNE 122
Query: 107 WINL----RVPFSKGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVIM 153
+INL R+ D R K A E + W GR H G D+ N+A+L ++
Sbjct: 123 FINLATLFRIQNRLKDKRIGHKAAQESKGIEWEGRQHSGYVDAYNLAKLALTML 176
>gi|258621526|ref|ZP_05716559.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258627541|ref|ZP_05722318.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|449146225|ref|ZP_21777016.1| hypothetical protein D908_15711 [Vibrio mimicus CAIM 602]
gi|258580123|gb|EEW05095.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258586144|gb|EEW10860.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|449078163|gb|EMB49106.1| hypothetical protein D908_15711 [Vibrio mimicus CAIM 602]
Length = 176
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 73 TNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINL----RVPFSKGDVRCNLKEAVE 128
+N +W D ++L +ECR K IP P F ++NL R+ D R + A E
Sbjct: 93 SNKIYASWGRDD--LILINECREKGIPVP--FQEFLNLATLYRIQHRLKDKRIGHRAAQE 148
Query: 129 ---LGWHGRVHCGLDDSMNIARLLAVIM 153
+ W GR H G D+ N+A+L ++
Sbjct: 149 SQGIEWEGRQHSGYVDAYNLAKLALTML 176
>gi|262403997|ref|ZP_06080552.1| hypothetical protein VOA_001985 [Vibrio sp. RC586]
gi|262349029|gb|EEY98167.1| hypothetical protein VOA_001985 [Vibrio sp. RC586]
Length = 156
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 73 TNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINL----RVPFSKGDVRCNLKEAVE 128
+N +W D +L +ECR K IP P F ++NL R+ D R + A E
Sbjct: 73 SNKIYASWGRDDR--ILINECREKGIPVP--FQEFLNLATLYRIQHRLKDKRIGHRAAQE 128
Query: 129 ---LGWHGRVHCGLDDSMNIARLLAVIM 153
+ W GR H G D+ N+A+L ++
Sbjct: 129 SQGIEWEGRQHSGYVDAYNLAKLALTML 156
>gi|313217587|emb|CBY38652.1| unnamed protein product [Oikopleura dioica]
gi|313232309|emb|CBY09418.1| unnamed protein product [Oikopleura dioica]
Length = 627
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 14 YFVVVDFEATCDKK--IPHPQEIIEFPSVIVSGVTGQITVCFQIY 56
YFV +DFEATC++ +P EIIEFP+ +V + +I F Y
Sbjct: 86 YFVCIDFEATCERNNTFNYPHEIIEFPACLVHIESRKIVGEFHSY 130
>gi|209695293|ref|YP_002263222.1| exonuclease [Aliivibrio salmonicida LFI1238]
gi|208009245|emb|CAQ79508.1| putative exonuclease [Aliivibrio salmonicida LFI1238]
Length = 184
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 68/179 (37%), Gaps = 40/179 (22%)
Query: 11 DFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYALFLHDNWQ--- 65
+F+ V D E C + EIIE + TG++ Q Y D
Sbjct: 10 NFNRIVCFDLEMCCWNENGKGRTGEIIEVGLAEIDLQTGEVVRRAQYYVKPDEDEISLFC 69
Query: 66 -QHMGVTP-----------------------TNFAVVTWSDWDCQVMLESECRFKNIPKP 101
+ G+TP TN W +++L+SEC K I P
Sbjct: 70 VELTGITPRKIEKQGRPLEGVLKSMIKNFGGTNKIYAAWGH--DELILKSECEAKGIEFP 127
Query: 102 SYFNRWINL----RVPFSKGDVRCNLKEAVE---LGWHGRVHCGLDDSMNIARLLAVIM 153
F +INL R+ K + R + A+E + W GR H G D+ N+A+L I+
Sbjct: 128 --FVEFINLATLYRIKSRKKNDRMGQRRAMEELHIEWEGRQHSGYVDAYNLAQLALKIL 184
>gi|320582863|gb|EFW97080.1| RNA binding protein (Arp), putative [Ogataea parapolymorpha DL-1]
Length = 598
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 58 LFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYF--NRWINLRVPFS 115
L L + ++H+ +F V ++ WD ++ L E R KNI PSY +R+ +L+ +
Sbjct: 87 LLLEQDIEKHLVSAKKDFTFVVFNSWDLRMRLPKESREKNIQLPSYLEHSRYFDLKKEYL 146
Query: 116 K 116
K
Sbjct: 147 K 147
>gi|71397756|ref|XP_802533.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70863734|gb|EAN81087.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 210
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Query: 101 PSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQ 154
PS F +WI+++ F+ +G ++ L +A+ + GR+H G+DD+ N+A ++ +++
Sbjct: 103 PSMFYQWIDVKRFFAHFFQCQQGKIKAML-DALNCPFEGRLHSGIDDARNVATIVIRMLK 161
Query: 155 RGFKF 159
G F
Sbjct: 162 LGCSF 166
>gi|428215737|ref|YP_007088881.1| exonuclease [Oscillatoria acuminata PCC 6304]
gi|428004118|gb|AFY84961.1| inhibitor of the KinA pathway to sporulation, predicted exonuclease
[Oscillatoria acuminata PCC 6304]
Length = 188
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 49/183 (26%)
Query: 12 FDYFVVVDFEATCDKKIPHPQ------------------EIIEFPSVIVSGVTGQIT-VC 52
D +VVD EATC +K P P E++E S++V Q++ C
Sbjct: 5 LDRIIVVDIEATCWEKDPPPNQEREIIEIGICPLEIASGELLEKESILVKPKQSQVSEFC 64
Query: 53 FQIYAL----------------FLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
Q+ L L + + H + ++ ++D + + EC K
Sbjct: 65 TQLTTLTPAQVNQGVSLGQSCSILRNKYISHQRIW------ASYGEFD-KRQFQVECEKK 117
Query: 97 NIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLA 150
+ P + NR +N++ FS K E + L G H G DD+ NIAR+L+
Sbjct: 118 GVRYP-FSNRHLNVKTLFSVMYALEKEVGMAGALEHLNLPLEGTHHRGHDDAWNIARILS 176
Query: 151 VIM 153
++
Sbjct: 177 QLI 179
>gi|302692530|ref|XP_003035944.1| hypothetical protein SCHCODRAFT_50758 [Schizophyllum commune H4-8]
gi|300109640|gb|EFJ01042.1| hypothetical protein SCHCODRAFT_50758 [Schizophyllum commune H4-8]
Length = 369
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 5 LPQKLQDFDYFVVVDFEATCDK--KIPHPQEIIEFPSVIV-------SGVTGQITVCFQI 55
LP Q++D F+VVD E TC + +P EIIEFP ++ G ++ V
Sbjct: 108 LPTTRQNYDAFLVVDVEGTCMQGTTFSYPNEIIEFPVCLMRWRDKADDGTASELEVVDTF 167
Query: 56 YALFLHDNWQQHMGVTPTNFAVVTWSDWDC 85
++ F+ W+ + T+ +T S D
Sbjct: 168 HS-FVRPTWRPVLSQFCTDLTGITQSQVDA 196
>gi|255075503|ref|XP_002501426.1| predicted protein [Micromonas sp. RCC299]
gi|226516690|gb|ACO62684.1| predicted protein [Micromonas sp. RCC299]
Length = 1047
Score = 37.0 bits (84), Expect = 7.6, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 20/100 (20%)
Query: 154 QRGFKFSITKSLTTPQDITQDSVMTWNRHHQFLV-----RQRKCTFQHTSRDP------- 201
+ G+ S+T+ L + T D+ + W R + L R+R F+ S P
Sbjct: 122 EHGWVTSMTQELEAEAE-TVDATVGWARTIEALEAAADGRRR---FEDASFPPDASSIDG 177
Query: 202 ----AEVEEFRYCFCGAKSFKKIIRKPGPKCGSFFFGCGN 237
E E C CGA++ K + K GP G +F+ CGN
Sbjct: 178 GRADKESESVPCCRCGARAKIKSVHKDGPNHGRWFYACGN 217
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.140 0.471
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,272,046,070
Number of Sequences: 23463169
Number of extensions: 170844589
Number of successful extensions: 339682
Number of sequences better than 100.0: 504
Number of HSP's better than 100.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 338060
Number of HSP's gapped (non-prelim): 1062
length of query: 254
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 115
effective length of database: 9,097,814,876
effective search space: 1046248710740
effective search space used: 1046248710740
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 75 (33.5 bits)