BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036628
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8C460|ERI3_MOUSE ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=1 SV=1
Length = 337
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 92/201 (45%), Gaps = 43/201 (21%)
Query: 3 PFLPQKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA----- 57
PF PQ+ + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 137 PFPPQR---YHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVH 193
Query: 58 ---------------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVM 88
L D W G+ N VT DWD +VM
Sbjct: 194 PQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVM 253
Query: 89 LESECRFKNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDS 142
L +C + +P YF +WINL+ +S + ++ + + L GR H G+DD
Sbjct: 254 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313
Query: 143 MNIARLLAVIMQRGFKFSITK 163
NIA ++ + RGF F T
Sbjct: 314 KNIANIMKTLAYRGFIFKQTS 334
>sp|A6QLH5|ERI3_BOVIN ERI1 exoribonuclease 3 OS=Bos taurus GN=ERI3 PE=2 SV=1
Length = 337
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 200
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 201 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 260
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 261 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 320
Query: 150 AVIMQRGFKFSITK 163
+ RGF F T
Sbjct: 321 KTLAYRGFIFKQTS 334
>sp|O43414|ERI3_HUMAN ERI1 exoribonuclease 3 OS=Homo sapiens GN=ERI3 PE=1 SV=2
Length = 337
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------ 57
Q + YF+V+DFEATCDK HPQEIIEFP + ++G T +I F +Y
Sbjct: 141 QRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFC 200
Query: 58 --------------------LFLHDNWQQHMGVTPTNFA--VVTWSDWDCQVMLESECRF 95
L D W G+ N VT DWD +VML +C++
Sbjct: 201 TELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQY 260
Query: 96 KNIPKPSYFNRWINLRVPFS------KGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLL 149
+P YF +WINL+ +S + ++ + + L GR H G+DD NIA ++
Sbjct: 261 LGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIM 320
Query: 150 AVIMQRGFKFSITK 163
+ RGF F T
Sbjct: 321 KTLAYRGFIFKQTS 334
>sp|A8K979|ERI2_HUMAN ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2
Length = 691
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 93/211 (44%), Gaps = 55/211 (26%)
Query: 10 QDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYAL--------- 58
Q FDY +V+DFE+TC D K H QEIIEFP+V+++ TGQI FQ Y
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91
Query: 59 ----------------------------FLHDNWQQHMGVTPTNF-----------AVVT 79
++H QQ + T A VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVT 151
Query: 80 WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-----KGDVRCNLKEAVELGWHGR 134
WSDWD V LE EC+ K + KP + N WI+LR + K + V + + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
H GLDDS N A L +++ G IT+SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSL 242
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 210 CFCGAKSFKKIIRKPGPKCGSFFFGC--GNLTPNKGACCNYF 249
C CG +S + ++ GP G F+ C G N+ CC YF
Sbjct: 597 CKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYQENR-KCCGYF 637
>sp|Q5HZL1|ERI2_XENLA ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 PE=2 SV=1
Length = 687
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 99/216 (45%), Gaps = 58/216 (26%)
Query: 6 PQKLQDFDYFVVVDFEATCDKKIPHP-QEIIEFPSVIVSGVTGQITVCFQIYA------- 57
P+ Q F+Y +++DFE+TC K H QEIIEFP+V+++ G+I F Y
Sbjct: 29 PKARQFFEYLIIIDFESTCWKDGKHSTQEIIEFPAVLLNVSNGEIESEFHTYVQPQEHPI 88
Query: 58 -------------------------LFLHDNW----QQHMGVT-----PTNF-------A 76
L ++W Q+ G+ PT+ A
Sbjct: 89 LSDFCTELTGINQQQVDDGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSTAEHKMCA 148
Query: 77 VVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-------KGDVRCNLKEAVEL 129
VTWSDWD V L ECR K + KP N WI+LR + KG + L++ + +
Sbjct: 149 FVTWSDWDLGVCLLYECRRKQMKKPDILNSWIDLRATYKLFYNRRPKG-LNGALQD-LGI 206
Query: 130 GWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
+ GR H GLDDS N A+L + ++ G ITKSL
Sbjct: 207 EFSGREHSGLDDSRNTAKLASRMICDGCVMKITKSL 242
>sp|Q5BKS4|ERI2_MOUSE ERI1 exoribonuclease 2 OS=Mus musculus GN=Eri2 PE=2 SV=1
Length = 688
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 93/219 (42%), Gaps = 55/219 (25%)
Query: 2 NPFLPQKLQDFDYFVVVDFEATC--DKKIPHPQEIIEFPSVIVSGVTGQI---------- 49
NP + Q + Y +VVDFE+TC D K EIIEFP+V+++ TG+I
Sbjct: 24 NPGGSRLKQLYAYLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQP 83
Query: 50 ---------------------------TVCFQIYALFLHDNWQQHM------GVTPTNFA 76
+C + ++H QQ P+
Sbjct: 84 QEHPILSEFCTELTGIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSE 143
Query: 77 V-----VTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF-----SKGDVRCNLKEA 126
V VTWSDWD V LE ECR K + KP + N WI+LR + K +
Sbjct: 144 VKLCAFVTWSDWDLGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQE 203
Query: 127 VELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165
V + + GR H GLDDS N A L +++ G IT+SL
Sbjct: 204 VGIEFSGREHSGLDDSRNTALLAWKMIRDGCLMKITRSL 242
>sp|Q8IV48|ERI1_HUMAN 3'-5' exoribonuclease 1 OS=Homo sapiens GN=ERI1 PE=1 SV=3
Length = 349
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 46/210 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYA-----LFLHD-- 62
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y L D
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 63 -------------------------NWQQ--HMGVTPTNFAVVTWSDWDCQVMLESECRF 95
+W + +G T ++++T WD L +C+
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQL 245
Query: 96 KNIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIAR 147
+ P + +WIN+R VP S+ + L E + + + GR HCGLDDS NIAR
Sbjct: 246 SRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHCGLDDSKNIAR 304
Query: 148 LLAVIMQRGFKFSITKSLTTPQDITQDSVM 177
+ ++Q G + I + + Q ++ S +
Sbjct: 305 IAVRMLQDGCELRINEKMHAGQLMSVSSSL 334
>sp|Q7TMF2|ERI1_MOUSE 3'-5' exoribonuclease 1 OS=Mus musculus GN=Eri1 PE=1 SV=2
Length = 345
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYAL----------- 58
+DY ++DFEATC++ P EIIEFP V+++ T +I FQ Y
Sbjct: 123 YDYICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLSEFC 182
Query: 59 -----FLHD----------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
D W + + T + ++T WD L +CR
Sbjct: 183 IGLTGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLS 242
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ P++ +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 243 RLKHPAFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 301
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + + Q ++ S +
Sbjct: 302 AVRMLQDGCELRINEKILGGQLMSVSSSL 330
>sp|Q5FVR4|ERI1_RAT 3'-5' exoribonuclease 1 OS=Rattus norvegicus GN=Eri1 PE=2 SV=1
Length = 345
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 44/209 (21%)
Query: 12 FDYFVVVDFEATCDKKIPHP--QEIIEFPSVIVSGVTGQITVCFQIYAL----------- 58
+DY ++DFEATC++ P EIIEFP V+++ + +I FQ Y
Sbjct: 123 YDYICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHSLEIEDTFQQYVRPEVNSQLSEFC 182
Query: 59 -----FLHD----------------NWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFK 96
D W + + T + ++T WD L +C+
Sbjct: 183 IGLTGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLNIQCQLS 242
Query: 97 NIPKPSYFNRWINLR--------VPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARL 148
+ PS+ +WIN+R VP S+ + L E + + + GR H GLDDS NIAR+
Sbjct: 243 RLKYPSFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLGMDYDGRPHSGLDDSKNIARI 301
Query: 149 LAVIMQRGFKFSITKSLTTPQDITQDSVM 177
++Q G + I + L Q ++ S +
Sbjct: 302 AVRMLQDGCELRINEKLHGGQLMSVSSSL 330
>sp|Q502M8|ERI2_DANRE ERI1 exoribonuclease 2 OS=Danio rerio GN=eri2 PE=2 SV=1
Length = 555
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 85/208 (40%), Gaps = 57/208 (27%)
Query: 10 QDFDYFVVVDFEATC-DKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------ 56
Q F + +++DFE+TC +K QEIIEFP+V++S +G + F Y
Sbjct: 30 QRFSFLIIIDFESTCWREKSSSGQEIIEFPAVLLSVCSGAVESEFHSYVQPQERPVLSAF 89
Query: 57 --------------ALFLH------DNWQQHM-------------GVTPTNF--AVVTWS 81
A LH W + + G P+ A VTWS
Sbjct: 90 CTELTGITQDQVDSAPPLHVVLSRFSRWLRSLQEERGVVFLTDSSGAAPSAQLCAFVTWS 149
Query: 82 DWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS-------KGDVRCNLKEAVELGWHGR 134
DWD V L EC+ K + P WI+LR + KG L +E + GR
Sbjct: 150 DWDLGVCLLYECKRKQLSVPEALKNWIDLRATYKLFYNRKPKGLRGALLDLGIE--FTGR 207
Query: 135 VHCGLDDSMNIARLLAVIMQRGFKFSIT 162
H GL D+ N A L +M G + SIT
Sbjct: 208 EHSGLVDARNTALLAQRMMTDGCQLSIT 235
>sp|O44406|ERI1_CAEEL 3'-5' exonuclease eri-1 OS=Caenorhabditis elegans GN=eri-1 PE=1
SV=2
Length = 582
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 45/197 (22%)
Query: 12 FDYFVVVDFEATCDKKI-PHPQEIIEFPSVIVSGVTGQITVCFQIY-------------- 56
FDY + +DFE TC + I +P EIIE P+V++ +I F+ Y
Sbjct: 148 FDYLIAIDFECTCVEIIYDYPHEIIELPAVLIDVREMKIISEFRTYVRPVRNPKLSEFCM 207
Query: 57 ------------ALFLHDNWQQ--------HMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
A + + Q+ ++G + FA VT D ++ +C
Sbjct: 208 QFTKIAQETVDAAPYFREALQRLYTWMRKFNLGQKNSRFAFVTDGPHDMWKFMQFQCLLS 267
Query: 97 NIPKPSYFNRWINLRVPFS-------KGDVRC---NLKEAVELGWHGRVHCGLDDSMNIA 146
NI P F +IN++ F KG+ + N+ E ++L + G H GLDD+ NIA
Sbjct: 268 NIRMPHMFRSFINIKKTFKEKFNGLIKGNGKSGIENMLERLDLSFVGNKHSGLDDATNIA 327
Query: 147 RLLAVIMQRGFKFSITK 163
+ +M+ + I +
Sbjct: 328 AIAIQMMKLKIELRINQ 344
>sp|Q8W566|Y3514_ARATH Uncharacterized exonuclease domain-containing protein At3g15140
OS=Arabidopsis thaliana GN=At3g15140 PE=2 SV=1
Length = 337
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 61/207 (29%)
Query: 7 QKLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA--------- 57
+K Q+F++F+V+D E EI+EFP +IV T ++ F +
Sbjct: 121 KKSQEFNFFLVIDLEGKV--------EILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQA 172
Query: 58 -----------------------------------LFLHDNWQQHMGVTPTNFAVVTWSD 82
L HD W + + A VT +
Sbjct: 173 INKYIEGKYGELGVDRVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAFVTCGN 232
Query: 83 WDCQVMLESECRFKNIPKPSYFNRWINLRVPF-------SKGDVRCNLKEAVELGWHGRV 135
WD + + +C NI P YF WINL+ + ++G V + ++L G
Sbjct: 233 WDIKTKIPEQCVVSNINLPPYFMEWINLKDVYLNFYGREARGMVSMMRQCGIKL--MGSH 290
Query: 136 HCGLDDSMNIARLLAVIMQRGFKFSIT 162
H G+DD+ NI R++ ++ G +T
Sbjct: 291 HLGIDDTKNITRVVQRMLSEGAVLKLT 317
>sp|Q10905|CRN4_CAEEL Cell death-related nuclease 4 OS=Caenorhabditis elegans GN=crn-4
PE=1 SV=1
Length = 298
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 47/202 (23%)
Query: 12 FDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQI--TVCFQIYAL---------- 58
FD +++DFE T D +P E+I+F V +I + F Y
Sbjct: 8 FDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKN 67
Query: 59 -------------------FLHDNWQQ---HMGVTPTNFAVVTWSDWDCQVMLESECRFK 96
+++ +QQ +G+ FA V S D + + + +
Sbjct: 68 CVDFTGIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLS 127
Query: 97 NIPKPSYFNRWINLRVPFSKGDVRC------------NLKEAVELGWHGRVHCGLDDSMN 144
NI P++F ++INL F+ R + E +L GR H +DD +N
Sbjct: 128 NIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLN 187
Query: 145 IARLLAVIMQRGFKFSITKSLT 166
IA +L ++ G K ++ + LT
Sbjct: 188 IATILQRMINMGAKVTVNELLT 209
>sp|P73955|PPNK2_SYNY3 Probable inorganic polyphosphate/ATP-NAD kinase 2 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=ppnK2 PE=3 SV=1
Length = 307
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 165 LTTPQDITQDSVMTWNRHHQ--FLVRQR----KCTFQHTSRDPAEVEEFRYCF 211
LT P D+ QD+ W+R +Q + V QR F+ RDP V E YC
Sbjct: 96 LTEPFDVFQDTQKVWDRLNQDRYAVSQRMMLAASLFEGDRRDPQMVGETYYCL 148
>sp|A1JHV9|LIGB_YERE8 DNA ligase B OS=Yersinia enterocolitica serotype O:8 / biotype 1B
(strain 8081) GN=ligB PE=3 SV=1
Length = 565
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 27 KIPHPQEIIEFPSV-IVSGVTGQITVCFQIYALFLHDNWQQHMGVTPTNFAVVTWSDWDC 85
K P PQ+I E + G TG+IT Q+ + + D W + + + ++ W WD
Sbjct: 310 KYPPPQQITEIKDIHFTVGRTGKITAILQVIPVKIDDKWIRRVNIG----SIARWKQWDI 365
>sp|Q54JB0|DDI1_DICDI Protein DDI1 homolog OS=Dictyostelium discoideum GN=ddi1 PE=3 SV=1
Length = 450
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 18/165 (10%)
Query: 60 LHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSKGDV 119
+ N Q M TP FA V ML EC P ++ + + K
Sbjct: 183 IEKNMQHAMEHTPEVFASV--------YMLYIECSINGHPLKAFVDTGAQQSIMSEKCAE 234
Query: 120 RCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFK-FSITKSLTTPQDITQDSVMT 178
RC + ++ +HG + G+ S I R+ + ++ G FS++ S+ QD+ +
Sbjct: 235 RCEISRIIDTRFHG-IAKGVGTSKIIGRVHSTDLKLGNSLFSVSLSILQNQDVDFILGLD 293
Query: 179 WNRHHQFLVRQRKCTFQHTSRDPAEVEEFRYCFCGAKSFKKIIRK 223
+ HQ ++ + Q + + F K K+I+ K
Sbjct: 294 MLKRHQVILDLNRGVLQ--------IANEKIEFLHEKDLKEILNK 330
>sp|Q08I43|ERI1_SCHPO 3'-5' exonuclease eri1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=eri1 PE=1 SV=1
Length = 313
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 72 PTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNR-WINLRVPFSKGDV----RCNLKEA 126
P N+A WD L + ++ +P P + ++++R + DV R N+
Sbjct: 194 PKNWAWACDGPWDMASFLAKQFKYDKMPIPDWIKGPFVDIRSFYK--DVYRVPRTNINGM 251
Query: 127 VE---LGWHGRVHCGLDDSMNIARLLAVIMQRGFKFS 160
+E L + G H G+DD+ N++R++ + +F
Sbjct: 252 LEHWGLQFEGSEHRGIDDARNLSRIVKKMCSENVEFE 288
>sp|Q54ZP5|WDR48_DICDI WD repeat-containing protein 48 homolog OS=Dictyostelium discoideum
GN=DDB_G0277533 PE=3 SV=1
Length = 1172
Score = 31.2 bits (69), Expect = 6.9, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 8 KLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVI-VSGVTGQITVCFQIYALFLHDNWQQ 66
K ++ + F VDF DKK+ E+I P V TG + + + F D +Q
Sbjct: 827 KGKEIESFGKVDF----DKKLEEFNEVISIPKWFQVDCKTGSLFISLESPLCFSADAYQT 882
Query: 67 HMGVTPTNFAVV 78
++G+TPT +++
Sbjct: 883 NLGLTPTEDSLI 894
>sp|Q757W2|YNG2_ASHGO Chromatin modification-related protein YNG2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=YNG2 PE=3 SV=1
Length = 285
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 209 YCFCGAKSFKKIIRKPGPKCGS--FFFGCGNL-TPNKG 243
YCFC + S+ +++ GP C F +GC NL P KG
Sbjct: 226 YCFCQSVSYGEMVACDGPNCKYEWFHYGCVNLDEPPKG 263
>sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1
Length = 1001
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 210 CFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYF 249
C CG ++ +RK GP G FF C G CN+F
Sbjct: 813 CNCGQEAVLLTVRKEGPNRGRQFFKC------NGGSCNFF 846
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.471
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,972,921
Number of Sequences: 539616
Number of extensions: 4084959
Number of successful extensions: 8295
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8238
Number of HSP's gapped (non-prelim): 48
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)