Query 036628
Match_columns 254
No_of_seqs 162 out of 1200
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cg7_A CRN-4, cell death-relat 100.0 9E-32 3.1E-36 246.0 18.6 214 8-229 14-285 (308)
2 2xri_A ERI1 exoribonuclease 3; 100.0 2.7E-29 9.1E-34 219.1 17.1 156 8-164 26-222 (224)
3 1w0h_A 3'-5' exonuclease ERI1; 100.0 2.2E-29 7.6E-34 214.9 15.7 158 8-165 5-204 (204)
4 1zbh_A 3'-5' exonuclease ERI1; 100.0 2.6E-28 9E-33 221.8 17.1 175 9-184 74-291 (299)
5 1zbu_A ERI-1 homolog, 3'-5' ex 99.9 1.1E-27 3.6E-32 222.7 15.0 175 9-184 124-341 (349)
6 2gui_A DNA polymerase III epsi 99.9 1.7E-22 5.9E-27 171.3 12.0 134 13-157 9-186 (194)
7 2p1j_A POLIII, DNA polymerase 99.9 2.7E-22 9.2E-27 169.7 12.0 132 13-158 12-178 (186)
8 2f96_A Ribonuclease T; RNAse, 99.9 2E-21 6.7E-26 168.7 12.5 140 14-156 30-213 (224)
9 3v9w_A Ribonuclease T; DEDD nu 99.8 5.2E-20 1.8E-24 160.7 12.8 141 14-157 38-222 (235)
10 3mxm_B Three prime repair exon 99.8 2.2E-20 7.7E-25 164.9 10.4 138 12-155 11-214 (242)
11 1y97_A Three prime repair exon 99.8 6.4E-20 2.2E-24 160.0 13.1 143 9-158 6-212 (238)
12 3u3y_B Three prime repair exon 99.8 4.7E-19 1.6E-23 162.5 10.5 139 12-156 11-215 (314)
13 2igi_A Oligoribonuclease; RNAs 99.8 5.5E-19 1.9E-23 147.9 8.8 134 11-156 3-177 (180)
14 2gbz_A Oligoribonuclease; ORN, 99.7 1.5E-17 5.2E-22 141.6 10.5 136 11-157 7-182 (194)
15 2qxf_A Exodeoxyribonuclease I; 99.7 7.9E-17 2.7E-21 155.3 13.3 135 12-156 8-201 (482)
16 3tr8_A Oligoribonuclease; tran 99.7 5.6E-17 1.9E-21 138.4 9.2 136 11-157 7-182 (186)
17 1wlj_A Interferon stimulated g 99.6 1.3E-16 4.5E-21 135.1 6.0 121 13-156 5-169 (189)
18 4hec_A Putative uncharacterize 98.4 1.1E-06 3.9E-11 74.9 9.0 120 15-155 24-181 (190)
19 4gmj_B CCR4-NOT transcription 98.1 2.4E-05 8.2E-10 70.6 11.2 138 14-155 35-244 (285)
20 2d5r_A CCR4-NOT transcription 97.8 0.00078 2.7E-08 59.6 15.5 140 14-157 25-236 (252)
21 2kfn_A Klenow fragment of DNA 97.6 0.00019 6.6E-09 70.5 10.1 128 14-158 27-195 (605)
22 2p51_A SPCC18.06C protein; DED 97.5 0.0015 5.1E-08 60.0 14.1 138 14-155 46-255 (333)
23 1x9m_A DNA polymerase; DNA plo 97.5 0.00028 9.6E-09 70.6 10.0 132 15-159 1-186 (698)
24 1uoc_A POP2; hydrolase, DEDD n 97.5 0.0025 8.6E-08 57.5 14.3 139 14-156 39-265 (289)
25 1qht_A Protein (DNA polymerase 96.3 0.034 1.2E-06 56.1 12.6 135 12-154 134-328 (775)
26 3iay_A DNA polymerase delta ca 94.4 0.5 1.7E-05 48.7 13.6 82 14-100 250-356 (919)
27 2gv9_A DNA polymerase; polymer 93.1 1.9 6.4E-05 45.7 15.4 83 14-101 321-446 (1193)
28 1s5j_A DNA polymerase I; repli 92.4 0.43 1.5E-05 48.6 9.3 78 13-100 190-298 (847)
29 1noy_A Protein (DNA polymerase 92.3 1.9 6.6E-05 39.6 12.9 26 14-40 107-136 (388)
30 4dfk_A DNA polymerase I, therm 87.3 0.58 2E-05 45.4 5.0 116 15-156 12-128 (540)
31 2py5_A DNA polymerase; protein 82.7 1.9 6.5E-05 41.9 6.3 72 13-97 6-78 (575)
32 3saf_A Exosome component 10; e 65.5 53 0.0018 30.6 11.1 121 14-155 130-276 (428)
33 1yt3_A Ribonuclease D, RNAse D 58.9 67 0.0023 28.8 10.3 120 14-155 23-169 (375)
34 3d45_A Poly(A)-specific ribonu 57.2 38 0.0013 32.2 8.6 80 74-157 277-393 (507)
35 3pv8_A DNA polymerase I; DNA p 57.2 10 0.00036 36.9 4.8 123 12-155 28-180 (592)
36 2gai_A DNA topoisomerase I; zi 53.8 3.4 0.00011 40.8 0.7 22 227-253 589-610 (633)
37 3qex_A DNA polymerase, GP43; d 51.5 57 0.0019 33.5 9.3 79 14-99 109-237 (903)
38 3k59_A POL II, DNA polymerase 50.9 52 0.0018 33.1 8.8 79 11-100 151-247 (786)
39 1hy9_A Cocaine and amphetamine 46.3 11 0.00036 23.8 1.8 34 208-251 5-38 (41)
40 2hbj_A Exosome complex exonucl 45.7 1.7E+02 0.0057 26.8 10.8 122 14-156 107-254 (410)
41 2a1r_A Poly(A)-specific ribonu 34.6 1.2E+02 0.004 28.1 7.9 44 14-57 23-92 (430)
42 2e6m_A Werner syndrome ATP-dep 33.4 1.8E+02 0.0063 23.2 8.4 125 14-156 41-195 (208)
43 2a1r_A Poly(A)-specific ribonu 27.7 2E+02 0.0067 26.6 8.2 25 132-156 373-397 (430)
44 3d45_A Poly(A)-specific ribonu 24.7 67 0.0023 30.5 4.5 42 14-56 25-93 (507)
45 3ezw_A Glycerol kinase; glycer 24.4 48 0.0016 31.2 3.3 29 13-54 4-32 (526)
46 1p6o_A Cytosine deaminase; hyd 21.0 49 0.0017 26.4 2.3 17 36-52 35-51 (161)
47 4bc3_A Xylulose kinase; transf 20.2 76 0.0026 29.9 3.8 31 10-53 7-37 (538)
No 1
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.98 E-value=9e-32 Score=246.03 Aligned_cols=214 Identities=23% Similarity=0.302 Sum_probs=160.1
Q ss_pred CCCCCCeEEEEEEeecCCC-CCCCCCcEEEEceEEEEcCCCeEEE--EEEEe----------------------------
Q 036628 8 KLQDFDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITV--CFQIY---------------------------- 56 (254)
Q Consensus 8 ~~q~~~~fvViDlEtTg~~-~~~~~~EIIEIgAV~vD~~~g~iv~--~F~~~---------------------------- 56 (254)
..+.|++|||||+||||++ ...+++||||||||++|.++|+|++ +|++|
T Consensus 14 ~~~~~~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap 93 (308)
T 3cg7_A 14 QHCPFDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTAD 93 (308)
T ss_dssp CCCCCSEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSC
T ss_pred ccCCCCeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCC
Confidence 3468999999999999987 2223459999999999987999998 99999
Q ss_pred ----ehhhHHHHhhhcCCCCCCeEEEEcCcccHHHHHHHHHHHcCCCCCCCCchhhhhHHHhcC-----C-------CCc
Q 036628 57 ----ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK-----G-------DVR 120 (254)
Q Consensus 57 ----vl~~f~~wl~~~gi~~~~~~~vt~g~fD~~~fL~~e~~~~gi~~P~~~~~~iDlr~~f~~-----~-------~~~ 120 (254)
|+++|.+|+++..+..++.+||+||+||++.||+++|+++|+++|.+++.|+|++++++. . +++
T Consensus 94 ~~~evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L 173 (308)
T 3cg7_A 94 TFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNI 173 (308)
T ss_dssp BHHHHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHH
T ss_pred CHHHHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCH
Confidence 356778888877777788999999999954799999999999999777889999877654 2 235
Q ss_pred ccHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHcCCccCcCcccccCCCCCCCcccccccccc----------chhccc
Q 036628 121 CNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQ----------FLVRQR 190 (254)
Q Consensus 121 ~~L~~~l~i~~eG~~HrALdDA~ntA~l~~~ll~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 190 (254)
.+|.+++|++++|++|||++||++||+|+.+|++++..+++++.+.... +++..+-+..+. ++-+..
T Consensus 174 ~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~~~~~i~~~~~~s~---~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 250 (308)
T 3cg7_A 174 GKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLTCCA---SWRRQPLVYNKEWRSSFMDAGKIFERVL 250 (308)
T ss_dssp HHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEESCC---GGGSSCCCCCTTGGGCHHHHHHHHHHHS
T ss_pred HHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCCChHHHHhhcC---CccccccccCcccccchHHHHHHHHHhc
Confidence 6788899999999899999999999999999999999999999987653 223322222222 111111
Q ss_pred ccccCCCCC-CCCCCcceeeeecCcccccceeccCCCCCC
Q 036628 191 KCTFQHTSR-DPAEVEEFRYCFCGAKSFKKIIRKPGPKCG 229 (254)
Q Consensus 191 ~~~~~~~~~-~~~~~~~~~~c~cg~~~~~~~~~~~gp~~g 229 (254)
|....+-.. .........||||+..+..+ ||-|+
T Consensus 251 p~~~~~~~~~~~~~~~~~~~~~c~~~~~~~-----~~~~~ 285 (308)
T 3cg7_A 251 PLVVTTIRAGDFRLEMYGVCRYCRKGMDVC-----GTSHQ 285 (308)
T ss_dssp SCEEEECCGGGCCGGGTTBCTTTCCBTTTT-----TSSCS
T ss_pred ccceeeeeccccchhhcccCCcCCCccccc-----ccccC
Confidence 222222111 12222234799999998666 77766
No 2
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=219.06 Aligned_cols=156 Identities=38% Similarity=0.716 Sum_probs=129.5
Q ss_pred CCCCCCeEEEEEEeecCCCCCCCCCcEEEEceEEEEcCCCeEEEEEEEe-------------------------------
Q 036628 8 KLQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY------------------------------- 56 (254)
Q Consensus 8 ~~q~~~~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~g~iv~~F~~~------------------------------- 56 (254)
..|.+++|||||+||||++...+++||||||||++|..+++++++|++|
T Consensus 26 ~~~~~~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~ 105 (224)
T 2xri_A 26 PPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQ 105 (224)
T ss_dssp CCCSCSEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHH
T ss_pred CCCCCCeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHH
Confidence 4567889999999999987211235999999999997668999999999
Q ss_pred -ehhhHHHHhhhcCCCCC--CeEEEEcCcccHHHH-HHHHHHHcCCCCCCCCchhhhhHHHhcC------CCCcccHHHH
Q 036628 57 -ALFLHDNWQQHMGVTPT--NFAVVTWSDWDCQVM-LESECRFKNIPKPSYFNRWINLRVPFSK------GDVRCNLKEA 126 (254)
Q Consensus 57 -vl~~f~~wl~~~gi~~~--~~~~vt~g~fD~~~f-L~~e~~~~gi~~P~~~~~~iDlr~~f~~------~~~~~~L~~~ 126 (254)
|+++|.+|+++..+... ++++++||+|| ..| |+++|+++|++.|.++..|+|+++.+.. ++++.+|.++
T Consensus 106 ~v~~~f~~~l~~~~lv~hn~~~~~~t~g~fD-~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~~L~~l~~~ 184 (224)
T 2xri_A 106 QVLERVDEWMAKEGLLDPNVKSIFVTCGDWD-LKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKG 184 (224)
T ss_dssp HHHHHHHHHHHHTTTTSTTSCEEEEESSSHH-HHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHHHH
T ss_pred HHHHHHHHHHhhcccccCCCceEEEEeChhh-HHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCCCHHHHHHH
Confidence 34677788887655433 57999999999 565 8899999999998777789998776643 3456788999
Q ss_pred hcCCCCCCCCchHHHHHHHHHHHHHHHHcCCccCcCcc
Q 036628 127 VELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKS 164 (254)
Q Consensus 127 l~i~~eG~~HrALdDA~ntA~l~~~ll~~g~~f~~~~~ 164 (254)
+|++.+|++|+|++||++||+|+.+|+++|..++++..
T Consensus 185 ~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~~~~it~~ 222 (224)
T 2xri_A 185 LSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSK 222 (224)
T ss_dssp TTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCSC
T ss_pred cCCCCCCCCcChHHHHHHHHHHHHHHHHcCCEEeecCC
Confidence 99999889999999999999999999999999987764
No 3
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.96 E-value=2.2e-29 Score=214.92 Aligned_cols=158 Identities=32% Similarity=0.621 Sum_probs=131.2
Q ss_pred CCCCCCeEEEEEEeecCCCC-C-CCCCcEEEEceEEEEcCCCeEEEEEEEe-----------------------------
Q 036628 8 KLQDFDYFVVVDFEATCDKK-I-PHPQEIIEFPSVIVSGVTGQITVCFQIY----------------------------- 56 (254)
Q Consensus 8 ~~q~~~~fvViDlEtTg~~~-~-~~~~EIIEIgAV~vD~~~g~iv~~F~~~----------------------------- 56 (254)
..+.++.|||||+||||.+. . +..+||||||||++|.++|+++++|++|
T Consensus 5 m~~~~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~ 84 (204)
T 1w0h_A 5 ADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADT 84 (204)
T ss_dssp CCCSSSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBC
T ss_pred CCCCcCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCC
Confidence 34679999999999999871 1 2578999999999997789999999999
Q ss_pred ---ehhhHHHHhhhcCC-CCCCeEEEEcCcccHHHHHHHHHHHcCCCCCCCCchhhhhHHHhcC-------CCCcccHHH
Q 036628 57 ---ALFLHDNWQQHMGV-TPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK-------GDVRCNLKE 125 (254)
Q Consensus 57 ---vl~~f~~wl~~~gi-~~~~~~~vt~g~fD~~~fL~~e~~~~gi~~P~~~~~~iDlr~~f~~-------~~~~~~L~~ 125 (254)
|+.+|.+|+++..+ ....++++||++||+..||+++|++.|++.|.++..|+|++++++. ++++.+|.+
T Consensus 85 ~~~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~ 164 (204)
T 1w0h_A 85 FPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLE 164 (204)
T ss_dssp HHHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHH
Confidence 34567777775431 1234689999999943499999999999998766789999877654 245677889
Q ss_pred HhcCCCCCCCCchHHHHHHHHHHHHHHHHcCCccCcCccc
Q 036628 126 AVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSL 165 (254)
Q Consensus 126 ~l~i~~eG~~HrALdDA~ntA~l~~~ll~~g~~f~~~~~~ 165 (254)
++|++.+|++|+|++||++||+|+.+|++++..+++||.|
T Consensus 165 ~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~i~~~~ 204 (204)
T 1w0h_A 165 KLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKM 204 (204)
T ss_dssp HTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEC
T ss_pred HcCCCCCCCccCcHHHHHHHHHHHHHHHHCCCeeeecCcC
Confidence 9999998889999999999999999999999999999875
No 4
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=221.78 Aligned_cols=175 Identities=28% Similarity=0.520 Sum_probs=141.3
Q ss_pred CCCCCeEEEEEEeecCCCC--CCCCCcEEEEceEEEEcCCCeEEEEEEEe------------------------------
Q 036628 9 LQDFDYFVVVDFEATCDKK--IPHPQEIIEFPSVIVSGVTGQITVCFQIY------------------------------ 56 (254)
Q Consensus 9 ~q~~~~fvViDlEtTg~~~--~~~~~EIIEIgAV~vD~~~g~iv~~F~~~------------------------------ 56 (254)
.+.++.|||||+||||++. .+..+||||||||++|..+|+++++|++|
T Consensus 74 ~~~~~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~ 153 (299)
T 1zbh_A 74 DSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTF 153 (299)
T ss_dssp CCSCSEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCH
T ss_pred CCCCceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCH
Confidence 3568999999999999862 24678999999999997678999999999
Q ss_pred --ehhhHHHHhhhcCCC-CCCeEEEEcCcccHHH-HHHHHHHHcCCCCCCCCchhhhhHHHhcC-----C--CCcccHHH
Q 036628 57 --ALFLHDNWQQHMGVT-PTNFAVVTWSDWDCQV-MLESECRFKNIPKPSYFNRWINLRVPFSK-----G--DVRCNLKE 125 (254)
Q Consensus 57 --vl~~f~~wl~~~gi~-~~~~~~vt~g~fD~~~-fL~~e~~~~gi~~P~~~~~~iDlr~~f~~-----~--~~~~~L~~ 125 (254)
|+.+|.+|+++..+. ..+++++||+.|| .. ||..+|++.|++.|.++..|+|++++|+. + +++.+|.+
T Consensus 154 ~evl~~f~~~l~~~~~~~~~~~lVahn~~fD-~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~ 232 (299)
T 1zbh_A 154 PQVLKKVIDLMKLKELGTKYKYSLLTDGSWD-MSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLE 232 (299)
T ss_dssp HHHHHHHHHHHHHTTBTTTBCEEEEESSSHH-HHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEEEeCHHH-HHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 345677788764221 1258899999999 66 99999999999998766789999887764 1 55777889
Q ss_pred HhcCCCCCCCCchHHHHHHHHHHHHHHHHcCCccCcCcccccCCCCCCCcccccccccc
Q 036628 126 AVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQ 184 (254)
Q Consensus 126 ~l~i~~eG~~HrALdDA~ntA~l~~~ll~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (254)
++|++++|++|+|++||++||+|+.+|++++..+.+++.+.....-+-+.++++.+.|.
T Consensus 233 ~~gi~~~g~~H~Al~DA~ata~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 291 (299)
T 1zbh_A 233 KLGMDYDGRPNCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPP 291 (299)
T ss_dssp HTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEETTEEEECCSSSCCCCCCC
T ss_pred HcCCCCCCCCCChHHHHHHHHHHHHHHHHhCCcCChhhhhhcCccccccccccccCCCC
Confidence 99999998999999999999999999999999999999887764323444455555444
No 5
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=222.73 Aligned_cols=175 Identities=29% Similarity=0.529 Sum_probs=142.4
Q ss_pred CCCCCeEEEEEEeecCCCC--CCCCCcEEEEceEEEEcCCCeEEEEEEEe------------------------------
Q 036628 9 LQDFDYFVVVDFEATCDKK--IPHPQEIIEFPSVIVSGVTGQITVCFQIY------------------------------ 56 (254)
Q Consensus 9 ~q~~~~fvViDlEtTg~~~--~~~~~EIIEIgAV~vD~~~g~iv~~F~~~------------------------------ 56 (254)
.+.++.|||||+||||++. .+..+||||||||++|..+|+++++|++|
T Consensus 124 ~~~~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~ 203 (349)
T 1zbu_A 124 DSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTF 203 (349)
T ss_dssp -CCCSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEH
T ss_pred cccCCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCH
Confidence 3568999999999999862 24679999999999997689999999999
Q ss_pred --ehhhHHHHhhhcCCC-CCCeEEEEcCcccHHH-HHHHHHHHcCCCCCCCCchhhhhHHHhcC-----C--CCcccHHH
Q 036628 57 --ALFLHDNWQQHMGVT-PTNFAVVTWSDWDCQV-MLESECRFKNIPKPSYFNRWINLRVPFSK-----G--DVRCNLKE 125 (254)
Q Consensus 57 --vl~~f~~wl~~~gi~-~~~~~~vt~g~fD~~~-fL~~e~~~~gi~~P~~~~~~iDlr~~f~~-----~--~~~~~L~~ 125 (254)
|+.+|.+|++...+. ..+++|+||+.|| .. ||..+|++.|+..|.++..|+|++++|+. + +++.+|.+
T Consensus 204 ~eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD-~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~ 282 (349)
T 1zbu_A 204 PQVLKKVIDLMKLKELGTKYKYSLLTDGSWD-MSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLE 282 (349)
T ss_dssp HHHHHHHHHHHHHTTBTTTBCEEEEESSSHH-HHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHH
T ss_pred HHHHHHHHHHHhcccccCCCcEEEEECcHhh-HHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 345677788764221 1258899999999 66 99999999999998777789999888764 1 45677889
Q ss_pred HhcCCCCCCCCchHHHHHHHHHHHHHHHHcCCccCcCcccccCCCCCCCcccccccccc
Q 036628 126 AVELGWHGRVHCGLDDSMNIARLLAVIMQRGFKFSITKSLTTPQDITQDSVMTWNRHHQ 184 (254)
Q Consensus 126 ~l~i~~eG~~HrALdDA~ntA~l~~~ll~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (254)
++|++++|++|+|++||++||+|+.+|++++..+.+++.+......+-+.++++.+.|.
T Consensus 283 ~~gi~~~g~~HrAl~DA~ata~ll~~ll~~~~~~~i~ell~~~~~~~~~~~~~~~~~~~ 341 (349)
T 1zbu_A 283 KLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPP 341 (349)
T ss_dssp HTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEETTEEEECCTTSCCCCCCC
T ss_pred HcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHhhccccccCcccccCCCCC
Confidence 99999988899999999999999999999999999999887764333455566666665
No 6
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.88 E-value=1.7e-22 Score=171.25 Aligned_cols=134 Identities=17% Similarity=0.132 Sum_probs=104.8
Q ss_pred CeEEEEEEeecCCCCCC-----CCCcEEEEceEEEEcCCCeEE-EEEEEee-----------------------------
Q 036628 13 DYFVVVDFEATCDKKIP-----HPQEIIEFPSVIVSGVTGQIT-VCFQIYA----------------------------- 57 (254)
Q Consensus 13 ~~fvViDlEtTg~~~~~-----~~~EIIEIgAV~vD~~~g~iv-~~F~~~v----------------------------- 57 (254)
..|||||+||||.+ + ..+||||||||+++ +|+++ ++|++||
T Consensus 9 ~~~vviD~ETTGl~--~~~~~~~~~~Iieig~v~~~--~~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~ 84 (194)
T 2gui_A 9 TRQIVLDTETTGMN--QIGAHYEGHKIIEIGAVEVV--NRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAE 84 (194)
T ss_dssp CEEEEEEEEESCCC--SSSSTTTTCCEEEEEEEEEE--TTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHHH
T ss_pred CCEEEEEeeCCCCC--CcccCCCCCEEEEEEEEEEE--CCeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCCCCHHH
Confidence 47999999999987 3 35899999999997 67876 4799993
Q ss_pred -hhhHHHHhhhcCCCCCCeEEEEcCcccHHHHHHHHHHHcCCCCCCCC--chhhhhHHH----hcC-CCCcccHHHHhcC
Q 036628 58 -LFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYF--NRWINLRVP----FSK-GDVRCNLKEAVEL 129 (254)
Q Consensus 58 -l~~f~~wl~~~gi~~~~~~~vt~g~fD~~~fL~~e~~~~gi~~P~~~--~~~iDlr~~----f~~-~~~~~~L~~~l~i 129 (254)
+++|.+|++. ...++||++|| ..||.+++++.|++.|.+- ..++|+..+ ++. .+++.+|.+++|+
T Consensus 85 v~~~~~~~l~~------~~lv~hn~~fD-~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~~gi 157 (194)
T 2gui_A 85 VADEFMDYIRG------AELVIHNAAFD-IGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEI 157 (194)
T ss_dssp HHHHHHHHHTT------SEEEETTHHHH-HHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHHTTC
T ss_pred HHHHHHHHHCC------CeEEEEchHHh-HHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHHcCc
Confidence 3456666643 45677799999 7899999999999987442 478886443 443 4567788899999
Q ss_pred CCCC-CCCchHHHHHHHHHHHHHHHHcCC
Q 036628 130 GWHG-RVHCGLDDSMNIARLLAVIMQRGF 157 (254)
Q Consensus 130 ~~eG-~~HrALdDA~ntA~l~~~ll~~g~ 157 (254)
+.++ .+|+|++||++||+|+.+|+++..
T Consensus 158 ~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 186 (194)
T 2gui_A 158 DNSKRTLHGALLDAQILAEVYLAMTGGQT 186 (194)
T ss_dssp CCTTCSSCCHHHHHHHHHHHHHHHTC---
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhccc
Confidence 9887 499999999999999999987643
No 7
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.88 E-value=2.7e-22 Score=169.75 Aligned_cols=132 Identities=23% Similarity=0.195 Sum_probs=103.4
Q ss_pred CeEEEEEEeecCCCCCCCCCcEEEEceEEEEcCCCeEEEEEEEee------------------------------hhhHH
Q 036628 13 DYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYA------------------------------LFLHD 62 (254)
Q Consensus 13 ~~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~g~iv~~F~~~v------------------------------l~~f~ 62 (254)
..|||||+||||.+ +..++|||||||+++ +|+++++|++|| +.+|.
T Consensus 12 ~~~v~iD~ETTGl~--~~~~~IieIg~v~~~--~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~ 87 (186)
T 2p1j_A 12 ATFVVLDFETTGLD--PQVDEIIEIGAVKIQ--GGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFL 87 (186)
T ss_dssp -CEEEEEEEESCSC--TTTCCEEEEEEEEEE--TTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHH
T ss_pred CCEEEEEEECCCCC--CCCCeEEEEEEEEEE--CCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHH
Confidence 47999999999986 567899999999996 789999999994 23445
Q ss_pred HHhhhcCCCCCCeEEEEcCcccHHHHHHHHHHHcCCCCCCCCchhhhhHHHhc---C--CCCcccHHHHhcCCCCCCCCc
Q 036628 63 NWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFS---K--GDVRCNLKEAVELGWHGRVHC 137 (254)
Q Consensus 63 ~wl~~~gi~~~~~~~vt~g~fD~~~fL~~e~~~~gi~~P~~~~~~iDlr~~f~---~--~~~~~~L~~~l~i~~eG~~Hr 137 (254)
+|++ +...+++|++|| ..||++++++.|++.|. ..++|+..+++ . ++++.+|.+++|++.++ +|+
T Consensus 88 ~~l~------~~~lv~hn~~fD-~~~L~~~~~~~g~~~~~--~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~~~-~H~ 157 (186)
T 2p1j_A 88 GFLE------DSIIVAHNANFD-YRFLRLWIKKVMGLDWE--RPYIDTLALAKSLLKLRSYSLDSVVEKLGLGPFR-HHR 157 (186)
T ss_dssp HHSS------SCEEEETTHHHH-HHHHHHHHHHHHCCCCC--CCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCSTT-CCH
T ss_pred HHHC------CCEEEEECcHHH-HHHHHHHHHHcCCCCCC--CCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCCCC-CcC
Confidence 5553 346677789999 78999999999998753 35677544332 2 55677888999998765 799
Q ss_pred hHHHHHHHHHHHHHHHHcCCc
Q 036628 138 GLDDSMNIARLLAVIMQRGFK 158 (254)
Q Consensus 138 ALdDA~ntA~l~~~ll~~g~~ 158 (254)
|++||++||+|+.+|++++.+
T Consensus 158 Al~Da~~t~~l~~~l~~~~~~ 178 (186)
T 2p1j_A 158 ALDDARVTAQVFLRFVEMMKK 178 (186)
T ss_dssp HHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999887543
No 8
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.86 E-value=2e-21 Score=168.75 Aligned_cols=140 Identities=15% Similarity=0.041 Sum_probs=105.2
Q ss_pred eEEEEEEeecCCCCCCCCCcEEEEceEEEEcC-CCe--EEEEEEEeehh-------------------------------
Q 036628 14 YFVVVDFEATCDKKIPHPQEIIEFPSVIVSGV-TGQ--ITVCFQIYALF------------------------------- 59 (254)
Q Consensus 14 ~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~-~g~--iv~~F~~~vl~------------------------------- 59 (254)
.|||||+||||++ +..++|||||||+++.. +|+ ++++|++||.+
T Consensus 30 ~~vviD~ETTGl~--~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~~v 107 (224)
T 2f96_A 30 LPVVVDVETGGFN--SATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAA 107 (224)
T ss_dssp EEEEEEEEESSSC--TTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHH
T ss_pred cEEEEEeeCCCCC--CCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHH
Confidence 6899999999987 55689999999999742 677 47999999532
Q ss_pred --hHHHHhhhcC---CCCCCeEEEEcCcccHHHHHHHHHHHcCCCCCCC-CchhhhhHHHhcC---CCCcccHHHHhcCC
Q 036628 60 --LHDNWQQHMG---VTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSY-FNRWINLRVPFSK---GDVRCNLKEAVELG 130 (254)
Q Consensus 60 --~f~~wl~~~g---i~~~~~~~vt~g~fD~~~fL~~e~~~~gi~~P~~-~~~~iDlr~~f~~---~~~~~~L~~~l~i~ 130 (254)
+|.+|+++.- ...+...+++|++|| ..||.+++++.|+..+++ ...++|+..+++. .+++.+|.+++|++
T Consensus 108 ~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD-~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~~~~L~~l~~~~gi~ 186 (224)
T 2f96_A 108 LTEIFRGIRKALKANGCKRAILVGHNSSFD-LGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGME 186 (224)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEETTHHHH-HHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHSCCSHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhhcccCCCEEEEeChhhh-HHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcCCCCHHHHHHHcCCC
Confidence 3444543210 001234555678999 689999999999875323 2478998766654 45577888999998
Q ss_pred CCC-CCCchHHHHHHHHHHHHHHHHcC
Q 036628 131 WHG-RVHCGLDDSMNIARLLAVIMQRG 156 (254)
Q Consensus 131 ~eG-~~HrALdDA~ntA~l~~~ll~~g 156 (254)
+++ .+|||++||++||+|+.+|+++.
T Consensus 187 ~~~~~~H~Al~Da~~ta~l~~~l~~~~ 213 (224)
T 2f96_A 187 FDNREAHSARYDTEKTAELFCGIVNRW 213 (224)
T ss_dssp CCTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 865 79999999999999999999873
No 9
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.82 E-value=5.2e-20 Score=160.67 Aligned_cols=141 Identities=12% Similarity=0.113 Sum_probs=106.1
Q ss_pred eEEEEEEeecCCCCCCCCCcEEEEceEEEEc-CCCe--EEEEEEEeeh--------------------------------
Q 036628 14 YFVVVDFEATCDKKIPHPQEIIEFPSVIVSG-VTGQ--ITVCFQIYAL-------------------------------- 58 (254)
Q Consensus 14 ~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~-~~g~--iv~~F~~~vl-------------------------------- 58 (254)
.|||||+||||++ +..+||||||||+++. ++|+ ++++|+.|+.
T Consensus 38 ~~vviD~ETTGl~--~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~~v 115 (235)
T 3v9w_A 38 YPVVIDVETAGFN--AKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSGYEA 115 (235)
T ss_dssp EEEEEEEEESSSC--TTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHHHH
T ss_pred cEEEEEEeCCCCC--CCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHH
Confidence 5899999999986 6679999999999963 2676 5799999842
Q ss_pred -hhHHHHhhhcCC---CCCCeEEEEcCcccHHHHHHHHHHHcCCCCCCCC-chhhhhHHHhcC---CCCcccHHHHhcCC
Q 036628 59 -FLHDNWQQHMGV---TPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYF-NRWINLRVPFSK---GDVRCNLKEAVELG 130 (254)
Q Consensus 59 -~~f~~wl~~~gi---~~~~~~~vt~g~fD~~~fL~~e~~~~gi~~P~~~-~~~iDlr~~f~~---~~~~~~L~~~l~i~ 130 (254)
.+|.+|+++..- ..+...+++|+.|| ..||++++++.|++.+++. ..++|+..++.. .+++.+|.+.++++
T Consensus 116 l~~~~~~l~~~~~~~~~~~~~lVahN~~fD-~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p~~~L~~l~~~~gi~ 194 (235)
T 3v9w_A 116 LHEIFKVVRKGIKASGCNRAIMVAHNANFD-HSFMMAAAERASLKRNPFHPFATFDTAALAGLALGQTVLSKACQTAGMD 194 (235)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEEETTTHHH-HHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHSCCSHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhhccCCCcEEEEeChHHH-HHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhCCCCHHHHHHHcCCC
Confidence 345556643100 01234555578999 6899999999999763332 367887665544 45677889999998
Q ss_pred CCC-CCCchHHHHHHHHHHHHHHHHcCC
Q 036628 131 WHG-RVHCGLDDSMNIARLLAVIMQRGF 157 (254)
Q Consensus 131 ~eG-~~HrALdDA~ntA~l~~~ll~~g~ 157 (254)
+++ .+|+|++||++||+|+.+|+++..
T Consensus 195 ~~~~~~H~Al~DA~~ta~l~~~l~~~l~ 222 (235)
T 3v9w_A 195 FDSTQAHSALYDTERTAVLFCEIVNRWK 222 (235)
T ss_dssp CCTTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 865 799999999999999999998743
No 10
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.82 E-value=2.2e-20 Score=164.89 Aligned_cols=138 Identities=13% Similarity=0.064 Sum_probs=100.5
Q ss_pred CCeEEEEEEeecCCCCCCCCCcEEEEceEEEEcCC-----------------CeEEEEEEEeeh----------------
Q 036628 12 FDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVT-----------------GQITVCFQIYAL---------------- 58 (254)
Q Consensus 12 ~~~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~-----------------g~iv~~F~~~vl---------------- 58 (254)
.+.|||||+||||++ +..+||||||||+++... .+++++|+.|+.
T Consensus 11 ~~~~vv~D~ETTGl~--~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt 88 (242)
T 3mxm_B 11 MQTLIFLDLEATGLP--SSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLS 88 (242)
T ss_dssp CSEEEEEEEEESSCG--GGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCC
T ss_pred cceEEEEEeecCCCC--CCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCC
Confidence 678999999999987 567999999999997420 178899999931
Q ss_pred -----------------hhHHHHhhhcCCCCCCeEEEEcC-cccHHHHHHHHHHHcCCCCCCCCchhhhhHH----Hhc-
Q 036628 59 -----------------FLHDNWQQHMGVTPTNFAVVTWS-DWDCQVMLESECRFKNIPKPSYFNRWINLRV----PFS- 115 (254)
Q Consensus 59 -----------------~~f~~wl~~~gi~~~~~~~vt~g-~fD~~~fL~~e~~~~gi~~P~~~~~~iDlr~----~f~- 115 (254)
++|.+|++.. ......++||+ .|| ..||++++++.|++.+..-..++|... +++
T Consensus 89 ~~~l~~~g~p~~~~ev~~~~~~fl~~~--~~~~~lVaHNav~FD-~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~ 165 (242)
T 3mxm_B 89 KAELEVQGRQRFDDNLAILLRAFLQRQ--PQPCCLVAHNGDRYD-FPLLQTELARLSTPSPLDGTFCVDSIAALKALEQA 165 (242)
T ss_dssp HHHHHHTTCCCSCHHHHHHHHHHHHTS--CSSEEEEETTTTTTH-HHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHH
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHhcC--CCCCEEEEcCChHhh-HHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhh
Confidence 2233444421 11145677787 999 789999999999886511124566433 331
Q ss_pred --------C-CCCcccHHHH-hcCCCCCCCCchHHHHHHHHHHHHHHHHc
Q 036628 116 --------K-GDVRCNLKEA-VELGWHGRVHCGLDDSMNIARLLAVIMQR 155 (254)
Q Consensus 116 --------~-~~~~~~L~~~-l~i~~eG~~HrALdDA~ntA~l~~~ll~~ 155 (254)
. ++++.+|.+. +|++.+ .+|||++||++||+|+.++.++
T Consensus 166 ~~p~~~~~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~ata~l~~~~~~~ 214 (242)
T 3mxm_B 166 SSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGDDLTLLSICQWKPQA 214 (242)
T ss_dssp HCC------CCCSHHHHHHHHHSSCCS-STTSHHHHHHHHHHHHTSSHHH
T ss_pred cCccccCCCCCcCHHHHHHHHhCCCCC-CCcChHHHHHHHHHHHHHHHHH
Confidence 1 4567778855 999876 5899999999999999988766
No 11
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.82 E-value=6.4e-20 Score=160.03 Aligned_cols=143 Identities=15% Similarity=0.041 Sum_probs=101.8
Q ss_pred CCCCCeEEEEEEeecCCCCCCCCCcEEEEceEEEEcC--------------CCeEEEEEEEeeh----------------
Q 036628 9 LQDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGV--------------TGQITVCFQIYAL---------------- 58 (254)
Q Consensus 9 ~q~~~~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~--------------~g~iv~~F~~~vl---------------- 58 (254)
.+..+.|||||+||||++ +..+||||||||++|.. +++++++|++||.
T Consensus 6 ~~~~~~~v~iD~ETTGl~--~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt 83 (238)
T 1y97_A 6 APRAETFVFLDLEATGLP--SVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLS 83 (238)
T ss_dssp SCCCSEEEEEEEEESSCG--GGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCC
T ss_pred CCccCeEEEEEeeCCCcC--CCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCC
Confidence 356788999999999986 55789999999999843 2488899999942
Q ss_pred -----------------hhHHHHhhhcCCCCCCeEEEEcC-cccHHHHHHHHHHHcCCCCCCCCchhhhh----HHHh--
Q 036628 59 -----------------FLHDNWQQHMGVTPTNFAVVTWS-DWDCQVMLESECRFKNIPKPSYFNRWINL----RVPF-- 114 (254)
Q Consensus 59 -----------------~~f~~wl~~~gi~~~~~~~vt~g-~fD~~~fL~~e~~~~gi~~P~~~~~~iDl----r~~f-- 114 (254)
..+.+|++.. ......+++|+ .|| ..||.+++.+.|+.+|. -..++|. +..+
T Consensus 84 ~~~l~~~~~p~f~~~v~~~l~~fl~~~--~~~~~lVahN~~~FD-~~fL~~~~~~~g~~~~~-~~~~iDt~~l~~~~~~~ 159 (238)
T 1y97_A 84 SEGLARCRKAGFDGAVVRTLQAFLSRQ--AGPICLVAHNGFDYD-FPLLCAELRRLGARLPR-DTVCLDTLPALRGLDRA 159 (238)
T ss_dssp HHHHHHTTCCCSCHHHHHHHHHHHTTS--CSSEEEEETTTTTTH-HHHHHHHHHHHTCCCCT-TCEEEEHHHHHHHHHHH
T ss_pred HHHHhhcCCCccHHHHHHHHHHHHHhC--CCCCEEEecCchhhh-HHHHHHHHHHcCCCCCC-CCEEEEHHHHHHHHHhc
Confidence 1233444421 11244555678 999 78999999999998762 2346664 3344
Q ss_pred -------cC--CCCcccHHH-HhcCCCCCCCCchHHHHHHHHHHHHHHHHcCCc
Q 036628 115 -------SK--GDVRCNLKE-AVELGWHGRVHCGLDDSMNIARLLAVIMQRGFK 158 (254)
Q Consensus 115 -------~~--~~~~~~L~~-~l~i~~eG~~HrALdDA~ntA~l~~~ll~~g~~ 158 (254)
+. ++++.+|.+ ++|++.+ .+|+|++||++||+|+.+|.++...
T Consensus 160 ~~p~~~~p~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 160 HSHGTRARGRQGYSLGSLFHRYFRAEPS-AAHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp C----------CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTHHHHHH
T ss_pred cCccccCCCCCCCCHHHHHHHHhCCCCc-cCccHHHHHHHHHHHHHHHHHHHHH
Confidence 22 455677888 6999875 6899999999999999999876443
No 12
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.78 E-value=4.7e-19 Score=162.46 Aligned_cols=139 Identities=13% Similarity=0.041 Sum_probs=101.1
Q ss_pred CCeEEEEEEeecCCCCCCCCCcEEEEceEEEEcCC-----------------CeEEEEEEEeeh----------------
Q 036628 12 FDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVT-----------------GQITVCFQIYAL---------------- 58 (254)
Q Consensus 12 ~~~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~-----------------g~iv~~F~~~vl---------------- 58 (254)
.+.|||||+||||++ +..++|||||||+++... .+++++|+.|+.
T Consensus 11 ~~tfVv~DlETTGL~--~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT 88 (314)
T 3u3y_B 11 MQTLIFLDLEATGLP--SSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLS 88 (314)
T ss_dssp CSEEEEEEEEESSCG--GGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCC
T ss_pred cCCEEEEEEECCCCC--CCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCC
Confidence 678999999999987 567999999999998421 157899999921
Q ss_pred -----------------hhHHHHhhhcCCCCCCeEEEEc-CcccHHHHHHHHHHHcCCCCCCCCchhhhhHH----Hhc-
Q 036628 59 -----------------FLHDNWQQHMGVTPTNFAVVTW-SDWDCQVMLESECRFKNIPKPSYFNRWINLRV----PFS- 115 (254)
Q Consensus 59 -----------------~~f~~wl~~~gi~~~~~~~vt~-g~fD~~~fL~~e~~~~gi~~P~~~~~~iDlr~----~f~- 115 (254)
++|.+|++.. ......++|| ..|| ..||++++++.|++.|..-..++|... +.+
T Consensus 89 ~e~l~~aG~P~f~~ev~~~l~~fL~~~--~~~~vLVAHNga~FD-~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~ 165 (314)
T 3u3y_B 89 KAELEVQGRQRFDDNLAILLRAFLQRQ--PQPCCLVAHNGDRYD-FPLLQTELARLSTPSPLDGTFCVDSIAALKALEQA 165 (314)
T ss_dssp HHHHHHTTCCBSCHHHHHHHHHHHHTS--CSSEEEEETTTTTTH-HHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTT
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcC--CCCcEEEEeCcHHHH-HHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHH
Confidence 2233455431 1124567779 5999 789999999999987522223566433 221
Q ss_pred ---------CCCCcccHHHH-hcCCCCCCCCchHHHHHHHHHHHHHHHHcC
Q 036628 116 ---------KGDVRCNLKEA-VELGWHGRVHCGLDDSMNIARLLAVIMQRG 156 (254)
Q Consensus 116 ---------~~~~~~~L~~~-l~i~~eG~~HrALdDA~ntA~l~~~ll~~g 156 (254)
.++++.+|.+. +|++.+ .+|||++||++||+|+.++.++.
T Consensus 166 ~~P~~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 166 SSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp C-------CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSHHHH
T ss_pred hCccccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 13557788888 999875 69999999999999999887653
No 13
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.77 E-value=5.5e-19 Score=147.95 Aligned_cols=134 Identities=13% Similarity=0.038 Sum_probs=88.2
Q ss_pred CCCeEEEEEEeecCCCCCCCCCcEEEEceEEEEcCCCeEEEE-EEEeehh------------------------------
Q 036628 11 DFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVC-FQIYALF------------------------------ 59 (254)
Q Consensus 11 ~~~~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~g~iv~~-F~~~vl~------------------------------ 59 (254)
.-..|||||+||||++ +..++|||||||++| .+++++++ |++||.+
T Consensus 3 ~~~~~v~iD~ETTGl~--~~~~~IieIg~v~~~-~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~ 79 (180)
T 2igi_A 3 NENNLIWIDLEMTGLD--PERDRIIEIATLVTD-ANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTM 79 (180)
T ss_dssp GGGCEEEEEEEESSSC--TTTCCEEEEEEEEEC-TTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCC
T ss_pred CCCcEEEEEeeCCCCC--CCCCceEEEEEEEEc-CCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCC
Confidence 3457999999999987 567899999999998 35667665 9999532
Q ss_pred -------hHHHHhhhcCCCCCCeEEEE-cCcccHHHHHHHHHHHcCCCCCCCCchhhhhHHHh--cCCCCcccHHHHhcC
Q 036628 60 -------LHDNWQQHMGVTPTNFAVVT-WSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF--SKGDVRCNLKEAVEL 129 (254)
Q Consensus 60 -------~f~~wl~~~gi~~~~~~~vt-~g~fD~~~fL~~e~~~~gi~~P~~~~~~iDlr~~f--~~~~~~~~L~~~l~i 129 (254)
+|.+|+++.. ..++..+|. +..|| ..||++++.+.+..+ ...++|+.++. .... ..++. .++
T Consensus 80 ~~~~v~~~~~~~l~~~~-~~~~~~lv~hn~~fD-~~fL~~~~~~~~~~~---~~~~~d~~tl~~l~~~~-~p~~~--~~i 151 (180)
T 2igi_A 80 GDREAELATLEFLKQWV-PAGKSPICGNSIGQD-RRFLFKYMPELEAYF---HYRYLDVSTLKELARRW-KPEIL--DGF 151 (180)
T ss_dssp CHHHHHHHHHHHHTTTS-CTTTSCEEESSHHHH-HHHHHHHCHHHHHHS---CSCEEETHHHHHHHHHH-CGGGG--GGS
T ss_pred CHHHHHHHHHHHHHHhC-CCCCceEEecCHHHH-HHHHHHHHHHhccCC---CcceeeHHHHHHHHHHh-ChHhh--hCC
Confidence 2223333210 011335555 55999 789999988766332 23567744331 1100 01121 256
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHcC
Q 036628 130 GWHGRVHCGLDDSMNIARLLAVIMQRG 156 (254)
Q Consensus 130 ~~eG~~HrALdDA~ntA~l~~~ll~~g 156 (254)
+. +.+|||++||++||+|+..+.+..
T Consensus 152 ~~-~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 152 TK-QGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CC-cCCcCcHHHHHHHHHHHHHHHHHh
Confidence 54 469999999999999999998764
No 14
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.72 E-value=1.5e-17 Score=141.58 Aligned_cols=136 Identities=11% Similarity=-0.041 Sum_probs=86.7
Q ss_pred CCCeEEEEEEeecCCCCCCCCCcEEEEceEEEEcCCCeEEEEEEEeehh-------------------------------
Q 036628 11 DFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIYALF------------------------------- 59 (254)
Q Consensus 11 ~~~~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~g~iv~~F~~~vl~------------------------------- 59 (254)
.-..|||||+||||++ +..++|||||||+.|.+...+.++|++++.+
T Consensus 7 ~~~~~vviD~ETTGl~--p~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~ 84 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLD--TDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVT 84 (194)
T ss_dssp -CCEEEEEEEEESCSC--TTTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCC
T ss_pred CCCCEEEEEeECCCCC--CCCCccEEEEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCC
Confidence 3457999999999987 6678999999999874222345679998532
Q ss_pred ------hHHHHhhhcCCCCCC-eEEEEcCcccHHHHHHHHHHHcCCCCCCCCchhhhhHHHhcC--CCCcccHHHHhcCC
Q 036628 60 ------LHDNWQQHMGVTPTN-FAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPFSK--GDVRCNLKEAVELG 130 (254)
Q Consensus 60 ------~f~~wl~~~gi~~~~-~~~vt~g~fD~~~fL~~e~~~~gi~~P~~~~~~iDlr~~f~~--~~~~~~L~~~l~i~ 130 (254)
+|.+|+++.. ..+. ..++++..|| ..||.+++.+.+..+ ..+.+|+.++... .. ..++.+ +++
T Consensus 85 ~~ev~~~~~~~l~~~~-~~~~~~lvghn~~FD-~~fL~~~~~~~~~~~---~~~~~d~~~l~~l~~~~-~p~~~~--~i~ 156 (194)
T 2gbz_A 85 HAQAEAQTVAFLGEWI-RAGASPMCGNSICQD-RRFLHRQMSRLERYF---HYRNLDVSTIKELARRW-APAVAS--GFA 156 (194)
T ss_dssp HHHHHHHHHHHHTTTC-CTTSSCEEESSHHHH-HHHHHHHCHHHHHHS---CSCEEEHHHHHHHHHHH-CGGGGT--TCC
T ss_pred HHHHHHHHHHHHHHhC-CCCCceEEecCHHHh-HHHHHHHHHHhcccC---CCccccHHHHHHHHHHh-CHHHHh--CCC
Confidence 2222332210 0111 1566678999 789999988766322 2345665443211 00 011221 254
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHcCC
Q 036628 131 WHGRVHCGLDDSMNIARLLAVIMQRGF 157 (254)
Q Consensus 131 ~eG~~HrALdDA~ntA~l~~~ll~~g~ 157 (254)
. ..+|||++||++||+++..+.+...
T Consensus 157 ~-~~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 157 K-SSAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp C-CSCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred C-CCCcccHHHHHHHHHHHHHHHHHhc
Confidence 3 4689999999999999999987754
No 15
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.70 E-value=7.9e-17 Score=155.33 Aligned_cols=135 Identities=10% Similarity=0.061 Sum_probs=95.5
Q ss_pred CCeEEEEEEeecCCCCCCCCCcEEEEceEEEEcCCCeEEEE-EEEee---------------------------------
Q 036628 12 FDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVC-FQIYA--------------------------------- 57 (254)
Q Consensus 12 ~~~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~g~iv~~-F~~~v--------------------------------- 57 (254)
-..|||||+||||.+ +..++|||||||++| .+|+++++ |+.||
T Consensus 8 ~~~~vv~DlETTGl~--p~~d~IIEIgaV~vd-~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~ev 84 (482)
T 2qxf_A 8 QSTFLFHDYETFGTH--PALDRPAQFAAIRTD-SEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAF 84 (482)
T ss_dssp CCEEEEEEEEESSSC--TTTSCEEEEEEEEEC-TTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHH
T ss_pred CCCEEEEEEECCCCC--CCCCeEEEEEEEEEE-CCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHH
Confidence 457999999999987 667899999999998 47888887 99994
Q ss_pred hhhHHHHhhhcCCCCCCeEEEE-c-CcccHHHHHHHHHHHcCCCCCC--CC--chh---hhhH-HHhc------------
Q 036628 58 LFLHDNWQQHMGVTPTNFAVVT-W-SDWDCQVMLESECRFKNIPKPS--YF--NRW---INLR-VPFS------------ 115 (254)
Q Consensus 58 l~~f~~wl~~~gi~~~~~~~vt-~-g~fD~~~fL~~e~~~~gi~~P~--~~--~~~---iDlr-~~f~------------ 115 (254)
+.+|.+|+++ .+.++|+ + .+|| ..||++++.+.+++... |. +.+ +++. ..+.
T Consensus 85 l~~f~~~l~~-----~~~~lVaHNs~~FD-~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~ 158 (482)
T 2qxf_A 85 AARIHSLFTV-----PKTCILGYNNVRFD-DEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEND 158 (482)
T ss_dssp HHHHHHHHTS-----TTEEEEESSTTTTH-HHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCT
T ss_pred HHHHHHHHcC-----CCCEEEEECCHHHH-HHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccc
Confidence 2234444542 1345555 5 4899 78999999999886321 10 233 3442 2332
Q ss_pred -C--CCCcccHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHcC
Q 036628 116 -K--GDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRG 156 (254)
Q Consensus 116 -~--~~~~~~L~~~l~i~~eG~~HrALdDA~ntA~l~~~ll~~g 156 (254)
. ++++.+|.+++|++.+ .+|+|++||++||+|+.+|.++.
T Consensus 159 ~~~~s~kL~~L~~~~Gi~~~-~aHrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 159 DGLPSFRLEHLTKANGIEHS-NAHDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp TSSBCCCHHHHHHHTTCCCC----CTTHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHcCCCCC-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 1 3456778899999875 68999999999999999988753
No 16
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.69 E-value=5.6e-17 Score=138.37 Aligned_cols=136 Identities=13% Similarity=-0.001 Sum_probs=89.9
Q ss_pred CCCeEEEEEEeecCCCCCCCCCcEEEEceEEEEcCCCeEEEEEEEe-e--------------------------------
Q 036628 11 DFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY-A-------------------------------- 57 (254)
Q Consensus 11 ~~~~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~g~iv~~F~~~-v-------------------------------- 57 (254)
.-..|||||+||||++ +..++|||||||++| .+++++++|..+ +
T Consensus 7 ~~~~~v~~D~ETTGL~--p~~d~IiEIgaV~~d-~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p 83 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLD--PERDRIIEIATIVTN-SHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSV 83 (186)
T ss_dssp CTTCEEEEEEEESSSC--TTTCCEEEEEEEEEC-TTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCC
T ss_pred CCCcEEEEEEECCCCC--CCCCceEEEEEEEEc-CCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCC
Confidence 4568999999999997 778999999999776 355777776444 2
Q ss_pred -----hhhHHHHhhhcCCCCCCeEEEEcCcccHHHHHHHHHHHcCCCCCCCCchhhhhHHHh--cCCCCcccHHHHhcCC
Q 036628 58 -----LFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVPF--SKGDVRCNLKEAVELG 130 (254)
Q Consensus 58 -----l~~f~~wl~~~gi~~~~~~~vt~g~fD~~~fL~~e~~~~gi~~P~~~~~~iDlr~~f--~~~~~~~~L~~~l~i~ 130 (254)
+++|.+|++++--.++...+.++..|| +.||.+++.+.|..+ .++.+|+.++. .+.. ..++.. +++
T Consensus 84 ~~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD-~~FL~~~~~~~~~~~---~~~~iDvsTl~elar~~-~P~~~~--~~~ 156 (186)
T 3tr8_A 84 DEVEAETLTLAFLEKYVSAGKSPLCGNSVCQD-RRFLSRYMPRLNQFF---HYRHLDVTTLKILAQRW-APQIAA--AHI 156 (186)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCSCEEESSTHHH-HHHHHHHCHHHHHHS---CSCEEEHHHHHHHHHHH-CHHHHT--TSC
T ss_pred CHHHHHHHHHHHHHHhccCCCcEEEEEcHHHh-HHHHHHHHHHcCCCC---CCcEEeHHHHHHHHHHH-Cccccc--cCC
Confidence 233344443211112334555678999 789999988776433 34667854432 1100 112222 555
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHcCC
Q 036628 131 WHGRVHCGLDDSMNIARLLAVIMQRGF 157 (254)
Q Consensus 131 ~eG~~HrALdDA~ntA~l~~~ll~~g~ 157 (254)
.+ .+|||++||+.+..++....+...
T Consensus 157 ~~-~~HrAl~Da~ati~~l~~y~~~~~ 182 (186)
T 3tr8_A 157 KE-SQHLALQDIRDSIEELRYYRAHLL 182 (186)
T ss_dssp CC-CCSCHHHHHHHHHHHHHHHHHHTB
T ss_pred CC-CCcChHHHHHHHHHHHHHHHHHhh
Confidence 43 699999999999999998887643
No 17
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.64 E-value=1.3e-16 Score=135.11 Aligned_cols=121 Identities=13% Similarity=0.095 Sum_probs=86.0
Q ss_pred CeEEEEEEeecCCCCCCCC-CcEEEEceEEEEcCCCeEEEEEEEee------------------------------hhhH
Q 036628 13 DYFVVVDFEATCDKKIPHP-QEIIEFPSVIVSGVTGQITVCFQIYA------------------------------LFLH 61 (254)
Q Consensus 13 ~~fvViDlEtTg~~~~~~~-~EIIEIgAV~vD~~~g~iv~~F~~~v------------------------------l~~f 61 (254)
..|||||+||||++ +.. .||||||+|.+ +|+++ |++|| +++|
T Consensus 5 ~~~vviD~ETTGl~--~~~~~~iiei~~v~~---~g~~i--~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~ 77 (189)
T 1wlj_A 5 REVVAMDCEMVGLG--PHRESGLARCSLVNV---HGAVL--YDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEI 77 (189)
T ss_dssp -CEEEEEEEEEEET--TTTEEEEEEEEEECT---TCCEE--EEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHH
T ss_pred CeEEEEEeECcCcC--CCCCceEEEEEEEeC---CCCEE--EeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHH
Confidence 46999999999986 333 58999999743 67776 88882 4566
Q ss_pred HHHhhhcCCCCCCeEEEEcCcccHHHHHHHHHHHcCCCCCCCCchhhhhHHH--------hcC--CCCcccHHHH-hcCC
Q 036628 62 DNWQQHMGVTPTNFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWINLRVP--------FSK--GDVRCNLKEA-VELG 130 (254)
Q Consensus 62 ~~wl~~~gi~~~~~~~vt~g~fD~~~fL~~e~~~~gi~~P~~~~~~iDlr~~--------f~~--~~~~~~L~~~-l~i~ 130 (254)
.+|++ +...+++++.|| ..||..+ +|. ..++|+..+ ++. ++++..|.+. +|++
T Consensus 78 ~~~l~------~~~lV~hn~~fD-~~~L~~~-------~~~--~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~ 141 (189)
T 1wlj_A 78 LQLLK------GKLVVGHDLKHD-FQALKED-------MSG--YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKS 141 (189)
T ss_dssp HHHHT------TSEEEESSHHHH-HHHTTCC-------CTT--CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCC
T ss_pred HHHHC------CCEEEECCcHHH-HHHHHHh-------CCC--CceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCC
Confidence 77775 245666678999 6788643 232 245665332 222 4556778887 7998
Q ss_pred CCCC--CCchHHHHHHHHHHHHHHHHcC
Q 036628 131 WHGR--VHCGLDDSMNIARLLAVIMQRG 156 (254)
Q Consensus 131 ~eG~--~HrALdDA~ntA~l~~~ll~~g 156 (254)
.++. +|+|++||++||+|+.+|++..
T Consensus 142 ~~~~~~~H~Al~Da~ata~l~~~l~~~~ 169 (189)
T 1wlj_A 142 IQNSLLGHSSVEDARATMELYQISQRIR 169 (189)
T ss_dssp CSCCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 8764 9999999999999999998763
No 18
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.38 E-value=1.1e-06 Score=74.89 Aligned_cols=120 Identities=19% Similarity=0.180 Sum_probs=68.3
Q ss_pred EEEEEEeecCCCCCCCCCcEEEEceEEEEcCCCeEEEEEEEe----------------------------------ehhh
Q 036628 15 FVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY----------------------------------ALFL 60 (254)
Q Consensus 15 fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~g~iv~~F~~~----------------------------------vl~~ 60 (254)
-+.+|.|+|+.. ...|+|+||+|- ++|+ +|+.. +..+
T Consensus 24 r~FlDTEFt~d~---~~~eLISIGlV~---EdGr---EFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i~~~ 94 (190)
T 4hec_A 24 RYFYDTEFIEDG---HTIELISIGVVA---EDGR---EYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIRLD 94 (190)
T ss_dssp EEEEEEEEEECS---SCEEEEEEEEEE---TTSC---EEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHHHHH
T ss_pred EEEEeeeecCCC---CCCCEEEEEEEc---CCCC---EEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHHHHH
Confidence 578999999743 568999999984 5675 47654 1234
Q ss_pred HHHHhhhcCCCCCCeEEEEc-CcccHHHHHHHHHHHcCCCCCCCC-chhhhhHHHhcC-CCCcccHHHHhcC-CCCCCCC
Q 036628 61 HDNWQQHMGVTPTNFAVVTW-SDWDCQVMLESECRFKNIPKPSYF-NRWINLRVPFSK-GDVRCNLKEAVEL-GWHGRVH 136 (254)
Q Consensus 61 f~~wl~~~gi~~~~~~~vt~-g~fD~~~fL~~e~~~~gi~~P~~~-~~~iDlr~~f~~-~~~~~~L~~~l~i-~~eG~~H 136 (254)
+.+||...+ ....-+..| +.|| ..+|...+.. -..+|... ....|+++++.. +.. .+ +..+..|
T Consensus 95 L~~FL~~~~--~~~~eLwa~~~~yD-~~~L~ql~g~-m~~lP~~~p~~~~dlr~~~~~~g~~--------~lp~~~~~~H 162 (190)
T 4hec_A 95 LEEFLRIDG--TDSIELWAWVGAYD-HVALCQLWGP-MTALPPTVPRFTRELRQLWEDRGCP--------RMPPRPRDVH 162 (190)
T ss_dssp HHHHTTTTS--SCEEEEEESSCHHH-HHHHHTTTSS-GGGSCTTSCSSCEEHHHHHHHTTCC--------CCCC-----C
T ss_pred HHHHHHhcC--CCCCEEEEeccccc-HHHHHHHhcc-cccCCcccchhhHHHHHHHHHcCCC--------CCCCCCCCCc
Confidence 566665422 223345555 5789 6677532211 01233222 223567765433 111 12 3356789
Q ss_pred chHHHHHHHHHHHHHHHHc
Q 036628 137 CGLDDSMNIARLLAVIMQR 155 (254)
Q Consensus 137 rALdDA~ntA~l~~~ll~~ 155 (254)
+||.||+..++.++.|...
T Consensus 163 ~AL~DAR~n~~~~~~~~~~ 181 (190)
T 4hec_A 163 DALVDARDQLRRFRLITST 181 (190)
T ss_dssp CHHHHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHHHhCc
Confidence 9999999999999977643
No 19
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.07 E-value=2.4e-05 Score=70.56 Aligned_cols=138 Identities=18% Similarity=0.113 Sum_probs=88.9
Q ss_pred eEEEEEEeecCCCCCC-------------------CCCcEEEEceEEEEcCCCeE-----EEEEEEe-------ehhhHH
Q 036628 14 YFVVVDFEATCDKKIP-------------------HPQEIIEFPSVIVSGVTGQI-----TVCFQIY-------ALFLHD 62 (254)
Q Consensus 14 ~fvViDlEtTg~~~~~-------------------~~~EIIEIgAV~vD~~~g~i-----v~~F~~~-------vl~~f~ 62 (254)
.||.||.|.||....| +.-.||+||..++|. .|+. +-.|..+ .-++-.
T Consensus 35 ~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~-~g~~p~~~~~wqFNF~f~~~~d~~~~~SI 113 (285)
T 4gmj_B 35 NYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNE-QGEYPPGTSTWQFNFKFNLTEDMYAQDSI 113 (285)
T ss_dssp CEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECT-TSCCCSSCCEEEEEBCCCTTTSCCCHHHH
T ss_pred CEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeecc-CCCcCCCeeEEEEEEEeccccccccHHHH
Confidence 4999999999986211 123499999999984 4432 3334332 112233
Q ss_pred HHhhhcCC------------------------C-CCCeEEEE-cCcccHHHHHHHHHHHcCCCCCCCCchhhh-hHHHhc
Q 036628 63 NWQQHMGV------------------------T-PTNFAVVT-WSDWDCQVMLESECRFKNIPKPSYFNRWIN-LRVPFS 115 (254)
Q Consensus 63 ~wl~~~gi------------------------~-~~~~~~vt-~g~fD~~~fL~~e~~~~gi~~P~~~~~~iD-lr~~f~ 115 (254)
++|.++|+ . +.+..||+ .|.+| ..+|-+.+. +-++|.-...+.. ++..|+
T Consensus 114 ~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~~yD-f~yL~k~lt--~~~LP~~~~eF~~~l~~~FP 190 (285)
T 4gmj_B 114 ELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYD-FGYLIKILT--NSNLPEEELDFFEILRLFFP 190 (285)
T ss_dssp HHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSCHHH-HHHHHHHHH--TSCCCSSHHHHHHHHHHHCS
T ss_pred HHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecchhh-HHHHHHHHh--CCCCCCCHHHHHHHHHHHCc
Confidence 34433332 1 35566777 67899 678876544 4455644444333 233443
Q ss_pred C--------------CCCcccHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHc
Q 036628 116 K--------------GDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQR 155 (254)
Q Consensus 116 ~--------------~~~~~~L~~~l~i~~eG~~HrALdDA~ntA~l~~~ll~~ 155 (254)
. ...+..|++.|+++-.|..|.|-.|++.|++++.+|.+.
T Consensus 191 ~vYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~ 244 (285)
T 4gmj_B 191 VIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREM 244 (285)
T ss_dssp CEEEHHHHGGGSTTCCSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhccccCChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence 3 122556788899988899999999999999999999876
No 20
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=97.79 E-value=0.00078 Score=59.64 Aligned_cols=140 Identities=19% Similarity=0.111 Sum_probs=91.8
Q ss_pred eEEEEEEeecCCCCCC-------------------CCCcEEEEceEEEEcCCCeE-----EEEEEEe-------ehhhHH
Q 036628 14 YFVVVDFEATCDKKIP-------------------HPQEIIEFPSVIVSGVTGQI-----TVCFQIY-------ALFLHD 62 (254)
Q Consensus 14 ~fvViDlEtTg~~~~~-------------------~~~EIIEIgAV~vD~~~g~i-----v~~F~~~-------vl~~f~ 62 (254)
.||.+|.|.+|....| +.-.||++|..++| ++|+. +-.|.-+ .-++-.
T Consensus 25 ~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~-~~g~~p~~~~~wqFNF~F~~~~d~~~~~Si 103 (252)
T 2d5r_A 25 NYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMN-EQGEYPPGTSTWQFNFKFNLTEDMYAQDSI 103 (252)
T ss_dssp CEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEEC-TTSCCCSSCCEEEEEBCCCTTTSCCCHHHH
T ss_pred CEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEc-cCCCCCCCceeEEEEEEECCcccccCHHHH
Confidence 5999999999986212 34579999999999 45553 3334333 012222
Q ss_pred HHhhhc------------------------CCC-CCCeEEEE-cCcccHHHHHHHHHHHcCCCCCCCCchhhhh-HHHhc
Q 036628 63 NWQQHM------------------------GVT-PTNFAVVT-WSDWDCQVMLESECRFKNIPKPSYFNRWINL-RVPFS 115 (254)
Q Consensus 63 ~wl~~~------------------------gi~-~~~~~~vt-~g~fD~~~fL~~e~~~~gi~~P~~~~~~iDl-r~~f~ 115 (254)
++|.++ |+. +++..|++ .|.+| ..+|-+-+. +-++|.-...|..+ +..|+
T Consensus 104 ~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yD-f~yL~k~L~--~~~LP~~~~~F~~~l~~~FP 180 (252)
T 2d5r_A 104 ELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYD-FGYLIKILT--NSNLPEEELDFFEILRLFFP 180 (252)
T ss_dssp HHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHH-HHHHHHHHH--TSCCCSSHHHHHHHHHHHCS
T ss_pred HHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcch-HHHHHHHhc--CCCCCCCHHHHHHHHHHHCc
Confidence 333332 322 35667777 68899 567765443 56677544444442 44444
Q ss_pred C--------------CCCcccHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHcCC
Q 036628 116 K--------------GDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRGF 157 (254)
Q Consensus 116 ~--------------~~~~~~L~~~l~i~~eG~~HrALdDA~ntA~l~~~ll~~g~ 157 (254)
. ...+..|.+.|++.-.|..|.|=.||..|+.++.+|.+...
T Consensus 181 ~iyD~K~l~~~~~~l~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f 236 (252)
T 2d5r_A 181 VIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 236 (252)
T ss_dssp CEEEHHHHGGGCTTCCSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred chhhHHHHHHHhcccCCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhc
Confidence 3 11245677889988889999999999999999999988753
No 21
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=97.63 E-value=0.00019 Score=70.52 Aligned_cols=128 Identities=14% Similarity=0.010 Sum_probs=80.8
Q ss_pred eEEEEEEeecCCCCCCCCCcEEEEceEEEEcCCCeEEEE--EE-------Ee----ehhhHHHHhhhcCCCCCCeEEEEc
Q 036628 14 YFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVC--FQ-------IY----ALFLHDNWQQHMGVTPTNFAVVTW 80 (254)
Q Consensus 14 ~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~g~iv~~--F~-------~~----vl~~f~~wl~~~gi~~~~~~~vt~ 80 (254)
.+|+||+|||+.+ +..++|++|+++.- +|+..-- .+ .. +++.|..|+++.. -..++++
T Consensus 27 ~~va~DtEttgl~--~~~~~iv~I~~~~~---~g~~~yip~~~~~~~~~~~l~~~~vl~~L~~~L~d~~----i~kV~hn 97 (605)
T 2kfn_A 27 PVFAFDTETDSLD--NISANLVGLSFAIE---PGVAAYIPVAHDYLDAPDQISRERALELLKPLLEDEK----ALKVGQN 97 (605)
T ss_dssp SSEEEEEEESCSC--TTTCCEEEEEEEEE---TTEEEEEECCCCSTTCCCCCCHHHHHHHHHHHHTCTT----SCEEESS
T ss_pred CeEEEEEecCCCC--cccCceEEEEEEEc---CCcEEEEeccccccccccccCHHHHHHHHHHHHcCCC----CeEEEEC
Confidence 4699999999986 55789999999852 4443100 11 01 2356777886532 2468889
Q ss_pred CcccHHHHHHHHHHHcCCCCCCCCchhhhhHH----HhcC--CCCcccHHHHh-cCCC--------CCC-----------
Q 036628 81 SDWDCQVMLESECRFKNIPKPSYFNRWINLRV----PFSK--GDVRCNLKEAV-ELGW--------HGR----------- 134 (254)
Q Consensus 81 g~fD~~~fL~~e~~~~gi~~P~~~~~~iDlr~----~f~~--~~~~~~L~~~l-~i~~--------eG~----------- 134 (254)
..|| ..+|.+ .|+.++. .++|+.. +.+. ++.+.+|.+.+ ++.. .|.
T Consensus 98 ak~D-~~~L~~----~Gi~l~~---~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~le 169 (605)
T 2kfn_A 98 LKYD-RGILAN----YGIELRG---IAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALE 169 (605)
T ss_dssp HHHH-HHHHHT----TTCCCCC---EEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCHH
T ss_pred cHHH-HHHHHH----CCCCCCC---ccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCHH
Confidence 9999 667764 5887663 3455432 3332 34456676655 6531 111
Q ss_pred --CCchHHHHHHHHHHHHHHHHcCCc
Q 036628 135 --VHCGLDDSMNIARLLAVIMQRGFK 158 (254)
Q Consensus 135 --~HrALdDA~ntA~l~~~ll~~g~~ 158 (254)
.|.|..||..+++|+..|.++...
T Consensus 170 ~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 170 EAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 256889999999998888776443
No 22
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=97.55 E-value=0.0015 Score=59.96 Aligned_cols=138 Identities=19% Similarity=0.206 Sum_probs=90.6
Q ss_pred eEEEEEEeecCCCCCC-------------------CCCcEEEEceEEEEcCCCeE-----EEEEEEe-------ehhhHH
Q 036628 14 YFVVVDFEATCDKKIP-------------------HPQEIIEFPSVIVSGVTGQI-----TVCFQIY-------ALFLHD 62 (254)
Q Consensus 14 ~fvViDlEtTg~~~~~-------------------~~~EIIEIgAV~vD~~~g~i-----v~~F~~~-------vl~~f~ 62 (254)
.||.+|.|.+|....+ +.-.||+||..++| ++|+. +-.|.-+ .-++-.
T Consensus 46 ~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd-~~G~~p~~~~twqFNF~F~~~~d~~~~~SI 124 (333)
T 2p51_A 46 PVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSD-EEGNAPVEACTWQFNFTFNLQDDMYAPESI 124 (333)
T ss_dssp CEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEEC-TTSCCCTTCSEEEEEBCCCTTTSCCCHHHH
T ss_pred CEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEc-cCCCCCCCceeEEEEEEECCcccccCHHHH
Confidence 6999999999997222 12359999999999 45553 3444433 011223
Q ss_pred HHhhhc------------------------CCC-CCCeEEEE-cCcccHHHHHHHHHHHcCCCCCCCCchhhhh-HHHhc
Q 036628 63 NWQQHM------------------------GVT-PTNFAVVT-WSDWDCQVMLESECRFKNIPKPSYFNRWINL-RVPFS 115 (254)
Q Consensus 63 ~wl~~~------------------------gi~-~~~~~~vt-~g~fD~~~fL~~e~~~~gi~~P~~~~~~iDl-r~~f~ 115 (254)
++|.++ |+. +++..|++ .|.+| ..+|-+-+ .+-++|.-...|..+ +..|+
T Consensus 125 ~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~YD-fgyLlK~L--t~~~LP~~~~eF~~~l~~~FP 201 (333)
T 2p51_A 125 ELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYD-FAYLLKAM--TQIPLPAEYEEFYKILCIYFP 201 (333)
T ss_dssp HHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHH-HHHHHHHH--HCSCCCSSHHHHHHHHHHHSS
T ss_pred HHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccchh-HHHHHHHh--cCCCCCCCHHHHHHHHHHHCc
Confidence 333332 322 34567777 57899 56776544 356677544444442 44444
Q ss_pred C-----------C---CCcccHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHc
Q 036628 116 K-----------G---DVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQR 155 (254)
Q Consensus 116 ~-----------~---~~~~~L~~~l~i~~eG~~HrALdDA~ntA~l~~~ll~~ 155 (254)
. . ..+..+++.|++.-.|..|.|=.||..|+.++.+|.+.
T Consensus 202 ~iYD~K~l~~~~~~l~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~ 255 (333)
T 2p51_A 202 KNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSR 255 (333)
T ss_dssp SEEEHHHHHTTTTCCCCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhccccCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHH
Confidence 3 1 12456788899988899999999999999999999875
No 23
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=97.55 E-value=0.00028 Score=70.57 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=76.7
Q ss_pred EEEEEEeecCCCCCCCCCcEEEEceEEEEcCCCeEEEEEEEe----ehhhHHHHhhhcCCCCCCeEEEEcC-cccHHHHH
Q 036628 15 FVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQIY----ALFLHDNWQQHMGVTPTNFAVVTWS-DWDCQVML 89 (254)
Q Consensus 15 fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~g~iv~~F~~~----vl~~f~~wl~~~gi~~~~~~~vt~g-~fD~~~fL 89 (254)
+||||+||||++ +..++|..|.++ |..++++. .|.-. ++..|..|++ .+ ...++||+ .|| ..+|
T Consensus 1 ~vv~D~ETtGl~--~~~d~i~~iqi~--~~~~~~~~-~~~p~~i~~~l~~L~~~l~-~~----~~kV~HNa~kfD-~~~L 69 (698)
T 1x9m_A 1 MIVSDIEANALL--ESVTKFHCGVIY--DYSTAEYV-SYRPSDFGAYLDALEAEVA-RG----GLIVFHNGHKYD-VPAL 69 (698)
T ss_dssp CEEEEEEESSCG--GGCCCEEEEEEE--ETTTTEEE-EECGGGHHHHHHHHHHHHH-TT----CCEEESSTTTTH-HHHH
T ss_pred CEEEEcCCCCcC--CCCCEEEEEEEE--ecCCCcEE-EEChHHHHHHHHHHHHHHh-cC----CeEEEcCChHHH-HHHH
Confidence 489999999987 556677665443 43344431 12111 2456777775 22 34788899 999 6788
Q ss_pred HHHHHH---cCCCCCCCCchhhhh----HHHhcC--CCCcccHHHHh--------c-------CCC----------CCC-
Q 036628 90 ESECRF---KNIPKPSYFNRWINL----RVPFSK--GDVRCNLKEAV--------E-------LGW----------HGR- 134 (254)
Q Consensus 90 ~~e~~~---~gi~~P~~~~~~iDl----r~~f~~--~~~~~~L~~~l--------~-------i~~----------eG~- 134 (254)
.+.+++ .|+.++. ..++|. +-+.+. .+.+.+|.+.+ + +++ .|.
T Consensus 70 ~~~~~~~~~~Gi~l~~--~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~ 147 (698)
T 1x9m_A 70 TKLAKLQLNREFHLPR--ENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEE 147 (698)
T ss_dssp HHHHHHHHCCCCCCCG--GGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhhhhcccCCccCCC--CcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCccccccccc
Confidence 776543 3777651 234453 223332 22222222211 1 010 111
Q ss_pred --------------CCchHHHHHHHHHHHHHHHHcCCcc
Q 036628 135 --------------VHCGLDDSMNIARLLAVIMQRGFKF 159 (254)
Q Consensus 135 --------------~HrALdDA~ntA~l~~~ll~~g~~f 159 (254)
.|.|..||..|.+|+..|..+....
T Consensus 148 ~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~ 186 (698)
T 1x9m_A 148 YVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYF 186 (698)
T ss_dssp CCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTTS
T ss_pred ccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999875444
No 24
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=97.47 E-value=0.0025 Score=57.46 Aligned_cols=139 Identities=12% Similarity=0.051 Sum_probs=88.2
Q ss_pred eEEEEEEeecCCC-CCC------------------CCCcEEEEceEEEEcCCCeE------EEEEEEe-------ehhhH
Q 036628 14 YFVVVDFEATCDK-KIP------------------HPQEIIEFPSVIVSGVTGQI------TVCFQIY-------ALFLH 61 (254)
Q Consensus 14 ~fvViDlEtTg~~-~~~------------------~~~EIIEIgAV~vD~~~g~i------v~~F~~~-------vl~~f 61 (254)
.||.+|.|.+|.. +.. +.-.||++|..+.|. +|+. +-.|.-+ .-++-
T Consensus 39 ~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~-~g~~p~~~~~~wqFNF~F~~~~d~~~~~S 117 (289)
T 1uoc_A 39 NHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDA-NGNKPDNGPSTWQFNFEFDPKKEIMSTES 117 (289)
T ss_dssp CEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECT-TCCCCSSSCSEEEEEBCCCTTCCCCCHHH
T ss_pred CEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEcc-CCCcCCCCcceEEEEEEECCccccccHHH
Confidence 5999999999986 211 345799999999994 4543 3333333 01222
Q ss_pred HHHhhhc------------------------CCC-CCCeEEEE-cCcccHHHHHHHHHHHcCCCCCCCCchh--------
Q 036628 62 DNWQQHM------------------------GVT-PTNFAVVT-WSDWDCQVMLESECRFKNIPKPSYFNRW-------- 107 (254)
Q Consensus 62 ~~wl~~~------------------------gi~-~~~~~~vt-~g~fD~~~fL~~e~~~~gi~~P~~~~~~-------- 107 (254)
.++|.++ |+. +++..|++ .|.+| ..+|-+-+. +-++|.-...|
T Consensus 118 I~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg~yD-fgyL~k~Lt--~~~LP~~~~~F~~~l~~~F 194 (289)
T 1uoc_A 118 LELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYD-LGFLINILM--NDSMPNNKEDFEWWVHQYM 194 (289)
T ss_dssp HHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHH-HHHHHHHHT--TSCCCSSHHHHHHHHHHHC
T ss_pred HHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccCcch-HHHHHHHhc--cccCCcCHHHHHHHHHHhC
Confidence 3333333 322 45667888 68899 577765443 45667543343
Q ss_pred ---hhhHHHhcC-----CC--------------CcccHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHcC
Q 036628 108 ---INLRVPFSK-----GD--------------VRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRG 156 (254)
Q Consensus 108 ---iDlr~~f~~-----~~--------------~~~~L~~~l~i~~eG~~HrALdDA~ntA~l~~~ll~~g 156 (254)
+|+|.+... +. .+..|++.|+++-.|..|.|=.||..|++++.+|.+..
T Consensus 195 P~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~ 265 (289)
T 1uoc_A 195 PNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLS 265 (289)
T ss_dssp SSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred ccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHHHHHH
Confidence 344432211 11 24567889999888999999999999999999999764
No 25
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=96.29 E-value=0.034 Score=56.14 Aligned_cols=135 Identities=7% Similarity=-0.010 Sum_probs=79.7
Q ss_pred CCeEEEEEEeecCCC-CCCCCCcEEEEceEEEEcCCCeEEEEEEE--------e-----ehhhHHHHhhhcCCCCCCeEE
Q 036628 12 FDYFVVVDFEATCDK-KIPHPQEIIEFPSVIVSGVTGQITVCFQI--------Y-----ALFLHDNWQQHMGVTPTNFAV 77 (254)
Q Consensus 12 ~~~fvViDlEtTg~~-~~~~~~EIIEIgAV~vD~~~g~iv~~F~~--------~-----vl~~f~~wl~~~gi~~~~~~~ 77 (254)
--..+.+|+|||+.. .++..++||.|+.+.- ..+++ -++.. + .+.+|.+++.+.. -+ ++
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~--~~~~~-~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~d---PD-ii 206 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGPILMISYADG--SEARV-ITWKKIDLPYVDVVSTEKEMIKRFLRVVREKD---PD-VL 206 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSCEEEEEEECS--SCEEE-EESSCCCCSSEEECSCHHHHHHHHHHHHHHHC---CS-EE
T ss_pred CcEEEEEEEEEcCCCCCCCCCCcEEEEEEEec--CCCee-EeeccccccceEEcCCHHHHHHHHHHHHHhcC---CC-EE
Confidence 346899999999854 2346789999996532 22222 11111 1 3567888887642 12 56
Q ss_pred EEc-C-cccHHHHHHHHHHHcCCCCCCC--------------------CchhhhhHHHhcC-----CCCcccHHH-HhcC
Q 036628 78 VTW-S-DWDCQVMLESECRFKNIPKPSY--------------------FNRWINLRVPFSK-----GDVRCNLKE-AVEL 129 (254)
Q Consensus 78 vt~-g-~fD~~~fL~~e~~~~gi~~P~~--------------------~~~~iDlr~~f~~-----~~~~~~L~~-~l~i 129 (254)
++| + .|| ..+|..-+..+|+++..- -+..+|+...++. ++.+.++++ .||.
T Consensus 207 vGyN~~~FD-lpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~ 285 (775)
T 1qht_A 207 ITYNGDNFD-FAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGK 285 (775)
T ss_dssp EESSTTTTH-HHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCSCCCHHHHHHHHHCC
T ss_pred EEeCCCCcc-HHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcCcCCHHHHHHHHhCC
Confidence 664 5 699 678988888888876410 0124566443332 455666665 4665
Q ss_pred CCCC------------CC------CchHHHHHHHHHHHHHHHH
Q 036628 130 GWHG------------RV------HCGLDDSMNIARLLAVIMQ 154 (254)
Q Consensus 130 ~~eG------------~~------HrALdDA~ntA~l~~~ll~ 154 (254)
.-+. .. +-.+.||.++.+|+.+++.
T Consensus 286 ~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 286 PKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp CCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 2211 11 1136799999998776653
No 26
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.5 Score=48.66 Aligned_cols=82 Identities=15% Similarity=0.204 Sum_probs=52.7
Q ss_pred eEEEEEEeecCCCC---CCCCCcEEEEceEEEEcCCCe--EEEEEE-----------E--e-----ehhhHHHHhhhcCC
Q 036628 14 YFVVVDFEATCDKK---IPHPQEIIEFPSVIVSGVTGQ--ITVCFQ-----------I--Y-----ALFLHDNWQQHMGV 70 (254)
Q Consensus 14 ~fvViDlEtTg~~~---~~~~~EIIEIgAV~vD~~~g~--iv~~F~-----------~--~-----vl~~f~~wl~~~gi 70 (254)
..+.||+||++..+ .+..++||.|+.++-.....+ +-..|. . + .+.+|.+|+.+..
T Consensus 250 rilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~~~~~~~V~~~~sE~eLL~~F~~~i~~~D- 328 (919)
T 3iay_A 250 RIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSPITGSMIFSHATEEEMLSNWRNFIIKVD- 328 (919)
T ss_dssp EEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCCCBTTBEEEEESSHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCCCCCCCeEEECCCHHHHHHHHHHHHHHhC-
Confidence 58899999997542 345689999998765321111 111221 0 1 3578888887643
Q ss_pred CCCCeEEEEc-C-cccHHHHHHHHHHHcCCCC
Q 036628 71 TPTNFAVVTW-S-DWDCQVMLESECRFKNIPK 100 (254)
Q Consensus 71 ~~~~~~~vt~-g-~fD~~~fL~~e~~~~gi~~ 100 (254)
.-++++| + .|| ..+|..-++.+|++.
T Consensus 329 ---PDIIvGyNi~~FD-lpyL~~Ra~~lgi~~ 356 (919)
T 3iay_A 329 ---PDVIIGYNTTNFD-IPYLLNRAKALKVND 356 (919)
T ss_dssp ---CSEEEESSTTTTH-HHHHHHHHHHTTCTT
T ss_pred ---CCEEEecCCccCC-HHHHHHHHHHcCCCc
Confidence 2256665 4 699 688988888888874
No 27
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=93.05 E-value=1.9 Score=45.68 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=50.0
Q ss_pred eEEEEEEeecCCC----CCCC----CCcEEEEceEEEEcCCCeE----E----------------------EEE-EEe--
Q 036628 14 YFVVVDFEATCDK----KIPH----PQEIIEFPSVIVSGVTGQI----T----------------------VCF-QIY-- 56 (254)
Q Consensus 14 ~fvViDlEtTg~~----~~~~----~~EIIEIgAV~vD~~~g~i----v----------------------~~F-~~~-- 56 (254)
..+.|||||+... +.|. .++||.|+.++....+... + +.+ ..+
T Consensus 321 rvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~V~~~~s 400 (1193)
T 2gv9_A 321 KLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVVLEFDS 400 (1193)
T ss_dssp EEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCEEEEEEEEESCCCCCHHHHHHHHHTTCCCCEEEEESS
T ss_pred eEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCcceEEEEECCCcCCcchhhhhcccccCCCceEEecCC
Confidence 5899999998651 2332 4789999988764221111 0 000 011
Q ss_pred ---ehhhHHHHhhhcCCCCCCeEEEEc-C-cccHHHHHHHH-HHHcCCCCC
Q 036628 57 ---ALFLHDNWQQHMGVTPTNFAVVTW-S-DWDCQVMLESE-CRFKNIPKP 101 (254)
Q Consensus 57 ---vl~~f~~wl~~~gi~~~~~~~vt~-g-~fD~~~fL~~e-~~~~gi~~P 101 (254)
.|.+|.+|+.+.. --++++| + .|| +.+|..- +..+|++++
T Consensus 401 E~eLL~~F~~~I~~~D----PDIIvGyNi~~FD-lpyL~~Ra~~~~gl~l~ 446 (1193)
T 2gv9_A 401 EFEMLLAFMTLVKQYG----PEFVTGYNIINFD-WPFLLAKLTDIYKVPLD 446 (1193)
T ss_dssp HHHHHHHHHHHHHHHC----CSEEEESSTTTTH-HHHHHHHHHHTTCCCCT
T ss_pred HHHHHHHHHHHHHhcC----CCEEEEcCCcCcc-HHHHHHHHHHHcCCChH
Confidence 3567777777643 2256665 4 699 5677655 567888876
No 28
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=92.39 E-value=0.43 Score=48.63 Aligned_cols=78 Identities=19% Similarity=0.160 Sum_probs=51.5
Q ss_pred CeEEEEEEee-cCCC-CCCCC----CcEEEEceEEEEcCCC--eEE----------------EEEEEe-----ehhhHHH
Q 036628 13 DYFVVVDFEA-TCDK-KIPHP----QEIIEFPSVIVSGVTG--QIT----------------VCFQIY-----ALFLHDN 63 (254)
Q Consensus 13 ~~fvViDlEt-Tg~~-~~~~~----~EIIEIgAV~vD~~~g--~iv----------------~~F~~~-----vl~~f~~ 63 (254)
-..+.||||| |+.. +.|.. ++||.|+.+ + ..| ++. ..+..+ .+.+|.+
T Consensus 190 l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~--~-~~g~~~~~~~~~~~~~~~~~~i~~~~v~~~~~E~~LL~~f~~ 266 (847)
T 1s5j_A 190 IKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--G-SDGLKKVLVLNRNDVNEGSVKLDGISVERFNTEYELLGRFFD 266 (847)
T ss_dssp CCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--E-TTSCEEEEEECSSCCCCCCEEETTEEEEEESSHHHHHHHHHH
T ss_pred ceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEE--c-cCCCcEEEEEeCCcccccccCCCCCeEEEeCCHHHHHHHHHH
Confidence 3689999999 7543 34433 689999986 3 222 110 012233 4678888
Q ss_pred HhhhcCCCCCCeEEEEcC--cccHHHHHHHHHHHcCCCC
Q 036628 64 WQQHMGVTPTNFAVVTWS--DWDCQVMLESECRFKNIPK 100 (254)
Q Consensus 64 wl~~~gi~~~~~~~vt~g--~fD~~~fL~~e~~~~gi~~ 100 (254)
|+.+. + ++++|. .|| ..+|...+..+|+..
T Consensus 267 ~i~~~-----d-iivgyN~~~FD-lPyL~~Ra~~lgi~~ 298 (847)
T 1s5j_A 267 ILLEY-----P-IVLTFNGDDFD-LPYIYFRALKLGYFP 298 (847)
T ss_dssp HHTTC-----S-EEEESSTTTTH-HHHHHHHHHTTTCCG
T ss_pred HhccC-----C-EEEEeCCCCch-HHHHHHHHHHcCCCc
Confidence 88652 3 677864 699 689988888899863
No 29
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=92.32 E-value=1.9 Score=39.58 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=19.9
Q ss_pred eEEEEEEeecCCCCCCC----CCcEEEEceE
Q 036628 14 YFVVVDFEATCDKKIPH----PQEIIEFPSV 40 (254)
Q Consensus 14 ~fvViDlEtTg~~~~~~----~~EIIEIgAV 40 (254)
..+.+|+||++ .+.|. .++||-|+.+
T Consensus 107 ~vlsfDIEt~~-~~fP~~~~~~d~Ii~Is~~ 136 (388)
T 1noy_A 107 RVANCDIEVTG-DKFPDPMKAEYEIDAITHY 136 (388)
T ss_dssp CEEEEEEEECC-SSCCCTTTCCSCEEEEEEE
T ss_pred EEEEEEEEeCC-CCCCCCCCCCCeEEEEEEE
Confidence 58999999998 43332 4699999986
No 30
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=87.33 E-value=0.58 Score=45.38 Aligned_cols=116 Identities=9% Similarity=0.001 Sum_probs=69.4
Q ss_pred EEEEEEeecCCCCCCCCCcEEEEceEEEEcCCCeEEEEEE-EeehhhHHHHhhhcCCCCCCeEEEEcCcccHHHHHHHHH
Q 036628 15 FVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQ-IYALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLESEC 93 (254)
Q Consensus 15 fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~g~iv~~F~-~~vl~~f~~wl~~~gi~~~~~~~vt~g~fD~~~fL~~e~ 93 (254)
++.+|.|+++.+ +...+++-|... + .++. |. ..+++.|..|+++ ...++++..||+.
T Consensus 12 ~valDtE~~~~~--~~~a~Lvgi~la--~--~~~a---~~i~~~l~~l~~~l~d------~~kV~hn~K~Dl~------- 69 (540)
T 4dfk_A 12 GAFVGFVLSRKE--PMWADLLALAAA--R--GGRV---HRAPEPYKALRDLKEA------RGLLAKDLSVLAL------- 69 (540)
T ss_dssp TCEEEEEESSSC--TTTCCEEEEEEE--E--TTEE---EECSSHHHHHTTCSSB------CSTTHHHHHHHHH-------
T ss_pred ceEEEEEecCCc--cCcccEEEEEEE--c--CCEE---EEehhhHHHHHHHHcC------CCEEEeccHHHHH-------
Confidence 489999999876 666777655443 2 3332 11 0256677777764 1245667788842
Q ss_pred HHcCCCCCCCCchhhhhHHHhcCCCCcccHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHcC
Q 036628 94 RFKNIPKPSYFNRWINLRVPFSKGDVRCNLKEAVELGWHGRVHCGLDDSMNIARLLAVIMQRG 156 (254)
Q Consensus 94 ~~~gi~~P~~~~~~iDlr~~f~~~~~~~~L~~~l~i~~eG~~HrALdDA~ntA~l~~~ll~~g 156 (254)
+.|+.++..|++.+=..-+.+.++.+.+|++.+...+ .|.|.+||..|++|+..|.++.
T Consensus 70 -~~Gi~~~~~fDT~laAyLL~p~~~~L~~La~~yl~~~---gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 70 -REGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEW---TEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp -HTTCCCCBCCCHHHHHHHHCTTCCCHHHHHHHHTSCC---CSCHHHHHHHHHHHHHHHHHHT
T ss_pred -HcCCCCCcceeHHHHHHHhCCCCCCHHHHHHHHhhhh---ccchHHHHHHHHHHHHHHHHHH
Confidence 6788765232222211222222344556666553222 3678999999999998887765
No 31
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=82.67 E-value=1.9 Score=41.93 Aligned_cols=72 Identities=7% Similarity=-0.060 Sum_probs=49.2
Q ss_pred CeEEEEEEeecCCCCCCCCCcEEEEceEEEEcCCCeEEEEE-EEeehhhHHHHhhhcCCCCCCeEEEEcCcccHHHHHHH
Q 036628 13 DYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCF-QIYALFLHDNWQQHMGVTPTNFAVVTWSDWDCQVMLES 91 (254)
Q Consensus 13 ~~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~g~iv~~F-~~~vl~~f~~wl~~~gi~~~~~~~vt~g~fD~~~fL~~ 91 (254)
+..+++|+||+-. +..+.++-+|. +|.. ....| -.-.+.+|.+|+.+++ ..+++||..|| ..||.+
T Consensus 6 ~~i~~~D~Et~~d---~~~~~~~~i~~--~~~~---~~~~~~~~~~l~~fi~~~~~~~----~~i~~hNl~FD-~~~l~~ 72 (575)
T 2py5_A 6 RKMYSCAFETTTK---VEDCRVWAYGY--MNIE---DHSEYKIGNSLDEFMAWVLKVQ----ADLYFHNLKFA-GAFIIN 72 (575)
T ss_dssp CCEEEEEEEECCB---TTBCCEEEEEE--EESS---CTTCEEEESCHHHHHHHHHHHC----CEEEETTHHHH-HHHHHH
T ss_pred ceEEEEEEEeecC---CCCCceEEEEE--EeCC---ceEEEEechhHHHHHHHHHHcC----CEEEEEChhhh-HHHHHH
Confidence 4589999999853 35567888886 4532 22233 2225788999997643 34666888999 678888
Q ss_pred HHHHcC
Q 036628 92 ECRFKN 97 (254)
Q Consensus 92 e~~~~g 97 (254)
++..+|
T Consensus 73 ~~~~~~ 78 (575)
T 2py5_A 73 WLERNG 78 (575)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 888875
No 32
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=65.51 E-value=53 Score=30.57 Aligned_cols=121 Identities=9% Similarity=0.019 Sum_probs=64.4
Q ss_pred eEEEEEEeecCCCCCCCCCcE--EEEc----eEEEEcCCCeEEEEEEEeehhhHHHHhhhcCCCCCCeEEEEcCcccHHH
Q 036628 14 YFVVVDFEATCDKKIPHPQEI--IEFP----SVIVSGVTGQITVCFQIYALFLHDNWQQHMGVTPTNFAVVTWSDWDCQV 87 (254)
Q Consensus 14 ~fvViDlEtTg~~~~~~~~EI--IEIg----AV~vD~~~g~iv~~F~~~vl~~f~~wl~~~gi~~~~~~~vt~g~fD~~~ 87 (254)
..|.||+|++... ++..++ |.|+ +.+||..... -.+..+..++++.. -.-+.++..+|+ .
T Consensus 130 ~~vavDtE~~~~~--~~~~~l~lIQLa~~~~~~lidpl~l~-------~~l~~L~~lL~dp~----i~KV~H~~k~Dl-~ 195 (428)
T 3saf_A 130 QEFAVNLEHHSYR--SFLGLTCLMQISTRTEDFIIDTLELR-------SDMYILNESLTDPA----IVKVFHGADSDI-E 195 (428)
T ss_dssp SEEEEEEEEECTT--CSSCEEEEEEEECSSCEEEEETTTTG-------GGGGGGHHHHTCTT----SEEEESSCHHHH-H
T ss_pred CeEEEEEEecCCC--CCCCeEEEEEEEeCCcEEEEEeccch-------hhHHHHHHHHcCCC----ceEEEeehHHHH-H
Confidence 4799999998765 344443 3333 1233321110 12455666776432 134777889994 5
Q ss_pred HHHHHHHHcCCCCCCCCchhhhhHHHhcC----CCCcccHH-HHhcCCCC---------CC------CCchHHHHHHHHH
Q 036628 88 MLESECRFKNIPKPSYFNRWINLRVPFSK----GDVRCNLK-EAVELGWH---------GR------VHCGLDDSMNIAR 147 (254)
Q Consensus 88 fL~~e~~~~gi~~P~~~~~~iDlr~~f~~----~~~~~~L~-~~l~i~~e---------G~------~HrALdDA~ntA~ 147 (254)
.|. +..|+.... .+|++..... ++.+.+|. +++|+... -+ .+-|..||..+.+
T Consensus 196 ~L~---~~~Gi~~~~----~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~ 268 (428)
T 3saf_A 196 WLQ---KDFGLYVVN----MFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLY 268 (428)
T ss_dssp HHH---HHHCCCCSS----EEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHH
T ss_pred HHH---HHcCCCcCc----eeechhHHHHhCCCCCCHHHHHHHHcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 564 245887543 3565443221 22233443 34565321 11 1235688999998
Q ss_pred HHHHHHHc
Q 036628 148 LLAVIMQR 155 (254)
Q Consensus 148 l~~~ll~~ 155 (254)
|+..|..+
T Consensus 269 L~~~L~~~ 276 (428)
T 3saf_A 269 IYDKMRLE 276 (428)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877655
No 33
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=58.86 E-value=67 Score=28.84 Aligned_cols=120 Identities=9% Similarity=-0.024 Sum_probs=64.5
Q ss_pred eEEEEEEeecCCCCCCCCCcEEE--Ec----eEEEEcCCCeEEEEEEEeehhhHHHHhhhcCCCCCCeEEEEcCcccHHH
Q 036628 14 YFVVVDFEATCDKKIPHPQEIIE--FP----SVIVSGVTGQITVCFQIYALFLHDNWQQHMGVTPTNFAVVTWSDWDCQV 87 (254)
Q Consensus 14 ~fvViDlEtTg~~~~~~~~EIIE--Ig----AV~vD~~~g~iv~~F~~~vl~~f~~wl~~~gi~~~~~~~vt~g~fD~~~ 87 (254)
.+|.||+|++... .+..++.- |+ +.++|.. .+ . .+..+..++++.. -..+.++..+| ..
T Consensus 23 ~~va~D~E~~~~~--~~~~~l~liqla~~~~~~lid~~--~l-----~-~~~~L~~ll~d~~----i~Kv~h~~k~D-l~ 87 (375)
T 1yt3_A 23 PAIALDTEFVRTR--TYYPQLGLIQLFDGEHLALIDPL--GI-----T-DWSPLKAILRDPS----ITKFLHAGSED-LE 87 (375)
T ss_dssp SEEEEEEEEECCS--CSSCEEEEEEEECSSCEEEECGG--GC-----S-CCHHHHHHHHCTT----SEEEESSCHHH-HH
T ss_pred CeEEEEeeecCCC--cCCCceEEEEEecCCcEEEEeCC--CC-----C-ChHHHHHHHcCCC----ceEEEeeHHHH-HH
Confidence 5799999999754 23344433 32 2222210 00 0 2456777887532 13577788999 45
Q ss_pred HHHHHHHHcCCCCCCCCchhhhhHHHhcC-----CCCcccHHHH-hcCC---------CCCCCCc------hHHHHHHHH
Q 036628 88 MLESECRFKNIPKPSYFNRWINLRVPFSK-----GDVRCNLKEA-VELG---------WHGRVHC------GLDDSMNIA 146 (254)
Q Consensus 88 fL~~e~~~~gi~~P~~~~~~iDlr~~f~~-----~~~~~~L~~~-l~i~---------~eG~~Hr------ALdDA~ntA 146 (254)
.|.+ ..|+... ..+|+...... ++.+.+|.+. ++.. |..+.-. |..||..+.
T Consensus 88 ~L~~---~~Gi~~~----~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~ 160 (375)
T 1yt3_A 88 VFLN---VFGELPQ----PLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLL 160 (375)
T ss_dssp HHHH---HHSSCCS----SEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHH
T ss_pred HHHH---HcCCCCC----cEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 6653 3577654 33565443211 2334455553 3542 2212212 567898888
Q ss_pred HHHHHHHHc
Q 036628 147 RLLAVIMQR 155 (254)
Q Consensus 147 ~l~~~ll~~ 155 (254)
+|+..|.++
T Consensus 161 ~L~~~L~~~ 169 (375)
T 1yt3_A 161 PITAKLMVE 169 (375)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887655
No 34
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=57.17 E-value=38 Score=32.23 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=47.9
Q ss_pred CeEEEEcCcccHHHHHHHHHHHcCCCCCCCCchhhh-hHHHhcC------------------CCCcccHHHHhc-----C
Q 036628 74 NFAVVTWSDWDCQVMLESECRFKNIPKPSYFNRWIN-LRVPFSK------------------GDVRCNLKEAVE-----L 129 (254)
Q Consensus 74 ~~~~vt~g~fD~~~fL~~e~~~~gi~~P~~~~~~iD-lr~~f~~------------------~~~~~~L~~~l~-----i 129 (254)
.-+|.||+-.| .-+|-+.+- -++|.-+..|.. ++..|+. ...+..|.+.++ .
T Consensus 277 kpiVgHN~l~D-l~~l~~~F~---~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~ 352 (507)
T 3d45_A 277 KLVVGHNMLLD-VMHTIHQFY---CPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDP 352 (507)
T ss_dssp CEEEESSCHHH-HHHHHHHHT---CSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCC
T ss_pred CeEEEechHHH-HHHHHHHhc---CCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCC
Confidence 45677788899 456655442 366754444432 2334433 111334455554 1
Q ss_pred CC-------------CCCCCchHHHHHHHHHHHHHHHHcCC
Q 036628 130 GW-------------HGRVHCGLDDSMNIARLLAVIMQRGF 157 (254)
Q Consensus 130 ~~-------------eG~~HrALdDA~ntA~l~~~ll~~g~ 157 (254)
+- .|..|.|=.||..|+.++.+|.....
T Consensus 353 p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 353 PKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp CCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 11 46789999999999999999987643
No 35
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=57.17 E-value=10 Score=36.92 Aligned_cols=123 Identities=14% Similarity=0.016 Sum_probs=67.4
Q ss_pred CCeEEEEEEeecCCCCCCCCCcEEEEceEEEEcCCCeEEEEEEE-----eehhhHHHHhhhcCCCCCCeEEEEcCcccHH
Q 036628 12 FDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQI-----YALFLHDNWQQHMGVTPTNFAVVTWSDWDCQ 86 (254)
Q Consensus 12 ~~~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~g~iv~~F~~-----~vl~~f~~wl~~~gi~~~~~~~vt~g~fD~~ 86 (254)
+..-..+|+|+++.+ +...+++-|+.. + . ++ .|.. .++..|..|+++.. -..++++..+| .
T Consensus 28 ~~~~~aldtE~~~~~--~~~a~Lvgisla--~-~-~~---a~yIp~~~~~~l~~Lk~lLed~~----i~KV~hn~K~D-l 93 (592)
T 3pv8_A 28 LADKAALVVEVVEEN--YHDAPIVGIAVV--N-E-HG---RFFLRPETALADPQFVAWLGDET----KKKSMFDSKRA-A 93 (592)
T ss_dssp GCSEEEEEEECCSSS--CTTCCCCEEEEE--E-T-TE---EEEECHHHHTTCHHHHHHHTCTT----SEEEESSHHHH-H
T ss_pred hccCcEEEEEEcCCc--cCcccEEEEEEE--c-C-Cc---eEEEccchhhHHHHHHHHHhCCC----CeEEEechHHH-H
Confidence 345679999999876 666777554332 2 1 12 1111 13567888887532 24677888999 4
Q ss_pred HHHHHHHHHcCCCCCCCCchhhhhHH----HhcC--CCCcccHHHH-hcCCC--------CCC----------CCchHHH
Q 036628 87 VMLESECRFKNIPKPSYFNRWINLRV----PFSK--GDVRCNLKEA-VELGW--------HGR----------VHCGLDD 141 (254)
Q Consensus 87 ~fL~~e~~~~gi~~P~~~~~~iDlr~----~f~~--~~~~~~L~~~-l~i~~--------eG~----------~HrALdD 141 (254)
.+|. ++|+.++. ..+|+.- +-+. ++.+.+|.+. ++... .|. .+-|..|
T Consensus 94 ~vL~----~~Gi~l~g---~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~YAa~D 166 (592)
T 3pv8_A 94 VALK----WKGIELCG---VSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRK 166 (592)
T ss_dssp HHHH----HTTCCCCC---EEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHH
T ss_pred HHHH----HcCCCCCC---ccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHHHHHHHH
Confidence 5664 46888752 2344322 1111 2333444432 33221 011 1335678
Q ss_pred HHHHHHHHHHHHHc
Q 036628 142 SMNIARLLAVIMQR 155 (254)
Q Consensus 142 A~ntA~l~~~ll~~ 155 (254)
|..+.+|...|..+
T Consensus 167 A~~l~~L~~~L~~~ 180 (592)
T 3pv8_A 167 AAAIWELERPFLDE 180 (592)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776544
No 36
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=53.83 E-value=3.4 Score=40.76 Aligned_cols=22 Identities=5% Similarity=-0.281 Sum_probs=10.4
Q ss_pred CCCCceeecCCCCCCCCCccccccccC
Q 036628 227 KCGSFFFGCGNLTPNKGACCNYFHSAT 253 (254)
Q Consensus 227 ~~g~~f~~c~~~~~~~~~~c~~f~w~~ 253 (254)
..|+.||||.||+ .|.|-.|..
T Consensus 589 k~G~~f~gCs~yp-----~C~f~~~~~ 610 (633)
T 2gai_A 589 DEIAVIDDGKIFL-----GRKDSESGS 610 (633)
T ss_dssp TSBCEEETTEEEC--------------
T ss_pred cCCCeEEeCCCCc-----CCCCeecCC
Confidence 4578899999874 399988864
No 37
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=51.49 E-value=57 Score=33.51 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=48.9
Q ss_pred eEEEEEEeecCCCCCCC----CCcEEEEceEEEEcCCCeEEE--E-----------------------------------
Q 036628 14 YFVVVDFEATCDKKIPH----PQEIIEFPSVIVSGVTGQITV--C----------------------------------- 52 (254)
Q Consensus 14 ~fvViDlEtTg~~~~~~----~~EIIEIgAV~vD~~~g~iv~--~----------------------------------- 52 (254)
..+.+|+|++...+.|+ ..|||-|+.+ |..+.+.+- -
T Consensus 109 r~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~--d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 186 (903)
T 3qex_A 109 RVANFDIEVTSPDGFPEPSQAKHPIDAITHY--DSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDKI 186 (903)
T ss_dssp CEEEEEEECCCTTSSCCTTTCCSCCCEEEEE--ETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHHTTE
T ss_pred cEEEEeEEeCCCCCCCCcccCCCCEEEEEEE--eCCCCEEEEEEeeccccccccccccccccccccccccccccccCCCe
Confidence 48999999987554442 5789999976 543433211 0
Q ss_pred -EEEe-----ehhhHHHHhhhcCCCCCCeEEEEc-C-cccHHHHHHHHHHH-cCCC
Q 036628 53 -FQIY-----ALFLHDNWQQHMGVTPTNFAVVTW-S-DWDCQVMLESECRF-KNIP 99 (254)
Q Consensus 53 -F~~~-----vl~~f~~wl~~~gi~~~~~~~vt~-g-~fD~~~fL~~e~~~-~gi~ 99 (254)
+..+ .+.+|.+|+.+.. .-++++| + .|| ..+|..-++. +|++
T Consensus 187 ~v~~f~sE~eLL~~F~~~I~~~D----PDIItGyN~~~FD-lPYL~~RA~~l~gi~ 237 (903)
T 3qex_A 187 IYMPFDNEKELLMEYLNFWQQKT----PVILTGWNVESFA-IPYVYNRIKNIFGES 237 (903)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTC----CSEEECSSTTTTH-HHHHHHHHHHHHCHH
T ss_pred EEEEcCCHHHHHHHHHHHHHHhC----CCEEEecCCccCC-HHHHHHHHHHHcCCc
Confidence 1112 3567888887642 2356655 4 699 6788766665 5753
No 38
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=50.87 E-value=52 Score=33.11 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=47.6
Q ss_pred CCCeEEEEEEeecCCCCCCCCCcEEEEce--------EEEEcCCC------eEEEEEEEe--ehhhHHHHhhhcCCCCCC
Q 036628 11 DFDYFVVVDFEATCDKKIPHPQEIIEFPS--------VIVSGVTG------QITVCFQIY--ALFLHDNWQQHMGVTPTN 74 (254)
Q Consensus 11 ~~~~fvViDlEtTg~~~~~~~~EIIEIgA--------V~vD~~~g------~iv~~F~~~--vl~~f~~wl~~~gi~~~~ 74 (254)
+-=..+.||+|+.+ + .+|+.||. +.+...++ -.+..|..= .+.+|.+|+.+.. .
T Consensus 151 p~lrilsfDIE~~~-~-----g~i~~I~~~~~~~~~v~~l~~~~~~~~~~~~~V~~f~~E~~lL~~f~~~i~~~d----P 220 (786)
T 3k59_A 151 PPLKWVSIDIETTR-H-----GELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYD----P 220 (786)
T ss_dssp CCCCEEEEEEEECT-T-----SCEEEEEEEETTEEEEEEESSCCSCCTTCSSEEEEESSHHHHHHHHHHHHHHHC----C
T ss_pred CCCeEEEEEEEEcC-C-----CCEEEEEecCCCCCeEEEEecCCCCCCCCCceEEEeCCHHHHHHHHHHHHHHcC----C
Confidence 33468999999993 2 37888874 12221110 012222111 4678888888753 1
Q ss_pred eEEEEc-C-cccHHHHHHHHHHHcCCCC
Q 036628 75 FAVVTW-S-DWDCQVMLESECRFKNIPK 100 (254)
Q Consensus 75 ~~~vt~-g-~fD~~~fL~~e~~~~gi~~ 100 (254)
-++++| + .|| ..+|.+-+..+|+++
T Consensus 221 Dii~g~N~~~FD-~pyL~~Ra~~~~i~~ 247 (786)
T 3k59_A 221 DVIIGWNVVQFD-LRMLQKHAERYRLPL 247 (786)
T ss_dssp SEEEESSTTTTH-HHHHHHHHHHHTCCC
T ss_pred CEEEecCCccCc-HHHHHHHHHHhCCCc
Confidence 256665 4 699 678888788888764
No 39
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=46.35 E-value=11 Score=23.81 Aligned_cols=34 Identities=32% Similarity=0.732 Sum_probs=22.4
Q ss_pred eeeecCcccccceeccCCCCCCCceeecCCCCCCCCCccccccc
Q 036628 208 RYCFCGAKSFKKIIRKPGPKCGSFFFGCGNLTPNKGACCNYFHS 251 (254)
Q Consensus 208 ~~c~cg~~~~~~~~~~~gp~~g~~f~~c~~~~~~~~~~c~~f~w 251 (254)
|.|.=|.. .-||| ||.-||.= .|. +|..|+||+-
T Consensus 5 P~Cd~Geq---CAvRk-G~RigklC-~C~-----rg~~Cn~fll 38 (41)
T 1hy9_A 5 PMCDAGEQ---CAVRK-GARIGKLC-DCP-----RGTSCNSFLL 38 (41)
T ss_dssp CBCCSSSC---SEEEC-SSSEEECC-BCC-----TTCCBCTTTC
T ss_pred CcCCccch---hhhhc-ccccchhc-CCC-----CCCcchhhhe
Confidence 46665544 45666 88888752 344 6788999973
No 40
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=45.74 E-value=1.7e+02 Score=26.79 Aligned_cols=122 Identities=10% Similarity=0.021 Sum_probs=64.0
Q ss_pred eEEEEEEeecCCCCCCCCCcE--EEEceEEEEcCCCeEEEEEEEe----ehhhHHHHhhhcCCCCCCeEEEEcCcccHHH
Q 036628 14 YFVVVDFEATCDKKIPHPQEI--IEFPSVIVSGVTGQITVCFQIY----ALFLHDNWQQHMGVTPTNFAVVTWSDWDCQV 87 (254)
Q Consensus 14 ~fvViDlEtTg~~~~~~~~EI--IEIgAV~vD~~~g~iv~~F~~~----vl~~f~~wl~~~gi~~~~~~~vt~g~fD~~~ 87 (254)
..|.||+|++... .+..++ |.|+ ..+ .+ --++.+ .+..+..++.+.. -..+.+++..| ..
T Consensus 107 ~~vavDtE~~~~~--~~~~~l~liQla-----~~~-~~-ylid~l~l~~~l~~L~~lL~d~~----i~KV~h~~k~D-l~ 172 (410)
T 2hbj_A 107 KEIAVDLEHHDYR--SYYGIVCLMQIS-----TRE-RD-YLVDTLKLRENLHILNEVFTNPS----IVKVFHGAFMD-II 172 (410)
T ss_dssp SEEEEEEEEECSS--SSSCEEEEEEEE-----CSS-CE-EEEETTTTTTTGGGGHHHHTCTT----SEEEESSCHHH-HH
T ss_pred CceEEEeeecCCc--CCCCcEEEEEEE-----ECC-cE-EEEechhhhhhHHHHHHHHcCCC----ceEEEEehHHH-HH
Confidence 4689999998753 223443 2332 111 11 011211 2345667776532 13567788999 45
Q ss_pred HHHHHHHHcCCCCCCCCchhhhhHHHhcC----CCCcccHHHHh-cC---------CCCCCC------CchHHHHHHHHH
Q 036628 88 MLESECRFKNIPKPSYFNRWINLRVPFSK----GDVRCNLKEAV-EL---------GWHGRV------HCGLDDSMNIAR 147 (254)
Q Consensus 88 fL~~e~~~~gi~~P~~~~~~iDlr~~f~~----~~~~~~L~~~l-~i---------~~eG~~------HrALdDA~ntA~ 147 (254)
.|.+ ..|+.... .+|++..... ++.+..|.+.+ +. +|..+. +-|..||..+.+
T Consensus 173 ~L~~---~~Gi~~~~----~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~ 245 (410)
T 2hbj_A 173 WLQR---DLGLYVVG----LFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLN 245 (410)
T ss_dssp HHHH---HHCCCCSS----EEEHHHHHHHHTCSCCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHH
T ss_pred HHHH---HcCCCcCC----EEEcHHHHHHhCCCccCHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5653 35887543 4565443222 23344555543 53 222222 125688998888
Q ss_pred HHHHHHHcC
Q 036628 148 LLAVIMQRG 156 (254)
Q Consensus 148 l~~~ll~~g 156 (254)
|+..|.++.
T Consensus 246 L~~~L~~~L 254 (410)
T 2hbj_A 246 IYDQLRNKL 254 (410)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877653
No 41
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=34.57 E-value=1.2e+02 Score=28.12 Aligned_cols=44 Identities=18% Similarity=0.091 Sum_probs=29.4
Q ss_pred eEEEEEEeecCCC-CCC----------------------CCCcEEEEceEEEEcCC---CeEEEEEEEee
Q 036628 14 YFVVVDFEATCDK-KIP----------------------HPQEIIEFPSVIVSGVT---GQITVCFQIYA 57 (254)
Q Consensus 14 ~fvViDlEtTg~~-~~~----------------------~~~EIIEIgAV~vD~~~---g~iv~~F~~~v 57 (254)
.||.||+|.||.. +.. +.--||++|...++... +-.+-.|.-|.
T Consensus 23 ~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~~~~~~~fNF~~ 92 (430)
T 2a1r_A 23 DFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYV 92 (430)
T ss_dssp SEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEB
T ss_pred CEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCCceeEEEEEEEe
Confidence 5999999999996 211 12459999999998432 12345555553
No 42
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=33.38 E-value=1.8e+02 Score=23.16 Aligned_cols=125 Identities=14% Similarity=-0.050 Sum_probs=61.7
Q ss_pred eEEEEEEeecCCCCCCCCCc--EEEEceEEEEcCCCeEEEEEEE----eehhhHHHHhhhcCCCCCCeEEEEcCcccHHH
Q 036628 14 YFVVVDFEATCDKKIPHPQE--IIEFPSVIVSGVTGQITVCFQI----YALFLHDNWQQHMGVTPTNFAVVTWSDWDCQV 87 (254)
Q Consensus 14 ~fvViDlEtTg~~~~~~~~E--IIEIgAV~vD~~~g~iv~~F~~----~vl~~f~~wl~~~gi~~~~~~~vt~g~fD~~~ 87 (254)
..|.||+|++.....+...+ .|.|+. .+++. --++- .+...+..++++.. -..+.++...| ..
T Consensus 41 ~~v~~D~E~~~~~~~~~~~~~~~iqla~-----~~~~~-~~i~~~~~~~~~~~L~~lL~d~~----i~Kv~~~~k~D-~~ 109 (208)
T 2e6m_A 41 DVVGFDMEWPPIYKPGKRSRVAVIQLCV-----SESKC-YLFHISSMSVFPQGLKMLLENKS----IKKAGVGIEGD-QW 109 (208)
T ss_dssp CEEEEEEECCC---CCSCCCCCEEEEEC-----SSSEE-EEECGGGCSSCCHHHHHHHTCTT----SEEEESSHHHH-HH
T ss_pred CEEEEEeecCCCCCCCCCCCeEEEEEec-----CCCeE-EEEECcccccchHHHHHHhcCCC----ceEEEEeeHHH-HH
Confidence 46899999987510122223 344431 11221 00100 12346777886532 12455677888 44
Q ss_pred HHHHHHHHcCCCCCCCCchhhhhHHH--hc---C-CCCcccHHHHh-cCC-----------CCCCC------CchHHHHH
Q 036628 88 MLESECRFKNIPKPSYFNRWINLRVP--FS---K-GDVRCNLKEAV-ELG-----------WHGRV------HCGLDDSM 143 (254)
Q Consensus 88 fL~~e~~~~gi~~P~~~~~~iDlr~~--f~---~-~~~~~~L~~~l-~i~-----------~eG~~------HrALdDA~ 143 (254)
.|.+ ..|+.+.. .+|+..+ |- . .+.+.+|.+.+ +.. |..+. +-|-.||.
T Consensus 110 ~L~~---~~gi~~~~----~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~ 182 (208)
T 2e6m_A 110 KLLR---DFDVKLES----FVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAY 182 (208)
T ss_dssp HHHH---HHCCCCCS----EEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHH
T ss_pred HHHH---HCCCCCCC----EEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHH
Confidence 5643 35887543 4563221 11 1 23344454433 432 21211 22568999
Q ss_pred HHHHHHHHHHHcC
Q 036628 144 NIARLLAVIMQRG 156 (254)
Q Consensus 144 ntA~l~~~ll~~g 156 (254)
.+.+|+..|.++.
T Consensus 183 ~~~~L~~~L~~~L 195 (208)
T 2e6m_A 183 AGLIIYQKLGNLG 195 (208)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcc
Confidence 9999998887764
No 43
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=27.68 E-value=2e+02 Score=26.60 Aligned_cols=25 Identities=8% Similarity=-0.076 Sum_probs=21.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHcC
Q 036628 132 HGRVHCGLDDSMNIARLLAVIMQRG 156 (254)
Q Consensus 132 eG~~HrALdDA~ntA~l~~~ll~~g 156 (254)
.+..|-|=.||..|+.++.+|....
T Consensus 373 ~~~~HeAGyDa~mTG~vFi~l~~~l 397 (430)
T 2a1r_A 373 SEQLHEAGYDAYITGLCFISMANYL 397 (430)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999863
No 44
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=24.71 E-value=67 Score=30.46 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=28.6
Q ss_pred eEEEEEEeecCCCCCC-----------------------CCCcEEEEceEEEEcCCCe----EEEEEEEe
Q 036628 14 YFVVVDFEATCDKKIP-----------------------HPQEIIEFPSVIVSGVTGQ----ITVCFQIY 56 (254)
Q Consensus 14 ~fvViDlEtTg~~~~~-----------------------~~~EIIEIgAV~vD~~~g~----iv~~F~~~ 56 (254)
.||.||+|.||....+ +.--||+||...++. +|+ .+..|.-+
T Consensus 25 ~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~-~~~~~~~~~~~fNf~ 93 (507)
T 3d45_A 25 DFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKY-DHTDSKHVTKSFNFY 93 (507)
T ss_dssp SEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEE-CSSSSCEEEEEEEEE
T ss_pred CEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEec-CCCCCceeEEeEEEE
Confidence 5999999999996111 234599999999984 332 34555555
No 45
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=24.37 E-value=48 Score=31.22 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=22.3
Q ss_pred CeEEEEEEeecCCCCCCCCCcEEEEceEEEEcCCCeEEEEEE
Q 036628 13 DYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCFQ 54 (254)
Q Consensus 13 ~~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~g~iv~~F~ 54 (254)
+|++.||+=||+.+ |+++| .+|+++.+.+
T Consensus 4 kYvlgID~GTss~K------------a~l~d-~~G~~va~~~ 32 (526)
T 3ezw_A 4 KYIVALDQGTTSSR------------AVVMD-HDANIISVSQ 32 (526)
T ss_dssp CEEEEEEECSSEEE------------EEEEC-TTCCEEEEEE
T ss_pred eEEEEEEcccccee------------eeEEc-CCCCEEEEEE
Confidence 68999999999754 67788 5788776543
No 46
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=20.99 E-value=49 Score=26.43 Aligned_cols=17 Identities=6% Similarity=0.157 Sum_probs=13.6
Q ss_pred EEceEEEEcCCCeEEEE
Q 036628 36 EFPSVIVSGVTGQITVC 52 (254)
Q Consensus 36 EIgAV~vD~~~g~iv~~ 52 (254)
-+|||+||.++|+|+.+
T Consensus 35 pVGAviVd~~~g~Ii~~ 51 (161)
T 1p6o_A 35 PIGGCLINNKDGSVLGR 51 (161)
T ss_dssp CCEEEEEETTTCCEEEE
T ss_pred CEEEEEEEecCCEEEEE
Confidence 38999997678999744
No 47
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=20.22 E-value=76 Score=29.93 Aligned_cols=31 Identities=16% Similarity=-0.048 Sum_probs=22.2
Q ss_pred CCCCeEEEEEEeecCCCCCCCCCcEEEEceEEEEcCCCeEEEEE
Q 036628 10 QDFDYFVVVDFEATCDKKIPHPQEIIEFPSVIVSGVTGQITVCF 53 (254)
Q Consensus 10 q~~~~fvViDlEtTg~~~~~~~~EIIEIgAV~vD~~~g~iv~~F 53 (254)
.+.++++.||+=||+.+ |+++| .+|+++.+-
T Consensus 7 ~~~~~~lgID~GTts~K------------a~l~d-~~G~vv~~~ 37 (538)
T 4bc3_A 7 APRRCCLGWDFSTQQVK------------VVAVD-AELNVFYEE 37 (538)
T ss_dssp --CCEEEEEEECSSEEE------------EEEEE-TTCCEEEEE
T ss_pred CCCCEEEEEEEcCcCEE------------EEEEC-CCCCEEEEE
Confidence 34679999999999765 77788 477776543
Done!