BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036632
         (240 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VH6|A Chain A, Crystal Structure Of A Flagellar Protein
 pdb|1VH6|B Chain B, Crystal Structure Of A Flagellar Protein
          Length = 145

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 153 VAEIEPLVKDFASRWKAAIELMHKD 177
           +AE+E  V DF   WK AI+   KD
Sbjct: 103 LAEVEGYVTDFRDAWKQAIQSERKD 127


>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
           Sap
 pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
           With Maltotetraose
          Length = 877

 Score = 27.3 bits (59), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 36  AASLIHLNVEYGDGQLELNMERLRMAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAV 93
             + IH   EYG  +  LN + +    DD L   A L    K    F+ ++YD + A+
Sbjct: 613 GTAFIHSGQEYGRTKRLLNPDYMTKVSDDKLPNKATLIEAVKEYPYFIHDSYDSSDAI 670


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,379,424
Number of Sequences: 62578
Number of extensions: 230199
Number of successful extensions: 527
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 7
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)