BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036632
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O55166|VPS52_RAT Vacuolar protein sorting-associated protein 52 homolog OS=Rattus
norvegicus GN=Vps52 PE=2 SV=2
Length = 723
Score = 141 bits (355), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 140/245 (57%), Gaps = 8/245 (3%)
Query: 1 MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
++ ++++ S+R+ + + L D PHY+ RRYAEF+++L+ +N + + + +L++
Sbjct: 482 LILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTLQLLGQLQV 541
Query: 61 AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
V++ + ++A F K Q+VFLINNYDM + VL E + + K +++LL + T F+
Sbjct: 542 EVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFI 601
Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEK-PITVAEIEPLVKDFASRWKAAIELMHKDVI 179
EELL F L+ FVK + +E+ A + L++ F S WKA++E + +DV+
Sbjct: 602 EELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKASVESLSQDVM 661
Query: 180 TSFSNFLCGMEILRAALTQLLLYYTR----LSDSIKRVAGGSALNKDLVSISSIMYEIKK 235
SF+NF G I++ ALTQL+ Y R LS R A +L++I +M E+KK
Sbjct: 662 RSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARA---ELINIHHLMVELKK 718
Query: 236 YSRTF 240
+ F
Sbjct: 719 HKPNF 723
>sp|Q8C754|VPS52_MOUSE Vacuolar protein sorting-associated protein 52 homolog OS=Mus
musculus GN=Vps52 PE=2 SV=1
Length = 723
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 140/245 (57%), Gaps = 8/245 (3%)
Query: 1 MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
++ ++++ S+R+ + + L D PHY+ RRYAEF+++L+ +N + + + +L++
Sbjct: 482 LILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTLQLLGQLQV 541
Query: 61 AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
V++ + ++A F K Q+VFLINNYDM + VL E + + K +++LL + T F+
Sbjct: 542 EVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFI 601
Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEK-PITVAEIEPLVKDFASRWKAAIELMHKDVI 179
EELL F L+ FVK + +E+ A + L++ F S WKA++E + +DV+
Sbjct: 602 EELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKASVESLSQDVM 661
Query: 180 TSFSNFLCGMEILRAALTQLLLYYTR----LSDSIKRVAGGSALNKDLVSISSIMYEIKK 235
SF+NF G I++ ALTQL+ Y R LS R A +L++I +M E+KK
Sbjct: 662 RSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARA---ELINIHHLMVELKK 718
Query: 236 YSRTF 240
+ F
Sbjct: 719 HKPNF 723
>sp|Q8N1B4|VPS52_HUMAN Vacuolar protein sorting-associated protein 52 homolog OS=Homo
sapiens GN=VPS52 PE=1 SV=1
Length = 723
Score = 140 bits (353), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 140/245 (57%), Gaps = 8/245 (3%)
Query: 1 MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
++ ++++ S+R+ + + L D PHY+ RRYAEF+++L+ +N + + + +L++
Sbjct: 482 LILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTMQLLGQLQV 541
Query: 61 AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
V++ + ++A F K Q+VFLINNYDM + VL E + + K +++LL + T F+
Sbjct: 542 EVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFI 601
Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEK-PITVAEIEPLVKDFASRWKAAIELMHKDVI 179
EELL F L+ FVK + +E+ A + L++ F S WK+++E + +DV+
Sbjct: 602 EELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKSSVESLSQDVM 661
Query: 180 TSFSNFLCGMEILRAALTQLLLYYTR----LSDSIKRVAGGSALNKDLVSISSIMYEIKK 235
SF+NF G I++ ALTQL+ Y R LS R A +L++I +M E+KK
Sbjct: 662 RSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARA---ELINIHHLMVELKK 718
Query: 236 YSRTF 240
+ F
Sbjct: 719 HKPNF 723
>sp|Q5TJF0|VPS52_CANFA Vacuolar protein sorting-associated protein 52 homolog OS=Canis
familiaris GN=VPS52 PE=3 SV=1
Length = 723
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 140/245 (57%), Gaps = 8/245 (3%)
Query: 1 MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
++ ++++ S+R+ + + L D PHY+ RRYAEF+++L+ +N + + + +L++
Sbjct: 482 LILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTVPNERTMQLLGQLQV 541
Query: 61 AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
V++ + ++A F K Q+VFLINNYDM + VL E + + K +++LL + T F+
Sbjct: 542 EVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFI 601
Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEK-PITVAEIEPLVKDFASRWKAAIELMHKDVI 179
EELL F L+ FVK + +E+ A + L++ F S WK+++E + +DV+
Sbjct: 602 EELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKSSVESLSQDVM 661
Query: 180 TSFSNFLCGMEILRAALTQLLLYYTR----LSDSIKRVAGGSALNKDLVSISSIMYEIKK 235
SF+NF G I++ ALTQL+ Y R LS R A +L++I +M E+KK
Sbjct: 662 RSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARA---ELINIHHLMVELKK 718
Query: 236 YSRTF 240
+ F
Sbjct: 719 HKPNF 723
>sp|G5EFV8|VPS52_CAEEL Vacuolar protein sorting-associated protein 52 homolog
OS=Caenorhabditis elegans GN=vps-52 PE=1 SV=2
Length = 702
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 129/250 (51%), Gaps = 12/250 (4%)
Query: 1 MVFDLHLSSLRNANVKTLWED---DVHPHYVMRRYAEFAASLIHLNVEYGDGQ-----LE 52
+V H S+++ ++K L D PH+++RRYAE ++ HL + G+ +E
Sbjct: 455 LVMSQHYESVKSVDLKKLMHSGSLDARPHFIVRRYAELTSA--HLMIAKASGKEMGAKME 512
Query: 53 LNMERLRMAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELL 112
+E +++ LLT+++ + K++ VFLINNYD+ ++++ + KI EL
Sbjct: 513 AVLENSEDSIEQLLTRMSAMQQTQKNKHVFLINNYDLILSIIDNEESKHTKIYAIVHELE 572
Query: 113 KSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAE-IEPLVKDFASRWKAAI 171
+ + FVEE+L H +IKFV S ++ + + + +V +F ++W+ A+
Sbjct: 573 QKSIDDFVEEMLEPHIGYMIKFVNECESLIVQGHTQLLVRYNDKVGTVVANFNAKWRPAV 632
Query: 172 ELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKR-VAGGSALNKDLVSISSIM 230
+ ++ + I F+NF G IL+ T+ + Y R + + V + + LV++ +M
Sbjct: 633 DSINSECIQLFTNFSLGTTILQTIFTKYVQYINRFTKILSHDVFAKNPVCSQLVNVHQVM 692
Query: 231 YEIKKYSRTF 240
EIK++ +
Sbjct: 693 LEIKRFKPAY 702
>sp|A8NS89|GOB1_BRUMA Trehalose-phosphatase OS=Brugia malayi GN=Bm1_08695 PE=3 SV=1
Length = 492
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT 180
+E L+ + D +KF+KT S + + T +KPI + + + +KD+ S++ ++ ++ V
Sbjct: 180 KETFLKEYEDTVKFLKTFISSE-AITGKKPIFITDWDGTMKDYCSQYATNLQPVYSAV-- 236
Query: 181 SFSNFLCGMEILRAALT 197
+ F + A LT
Sbjct: 237 GMTRFAASFTRISAVLT 253
>sp|Q9ENL2|VP4_CTFVL Uncharacterized protein VP4 OS=Colorado tick fever virus (strain
USA/Florio N-7180) PE=4 SV=1
Length = 1027
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 27/159 (16%)
Query: 69 LAKLFPKPKSQIVF--LINNYDMTI-----AVLKEASPEGGKIQLHYEELLKSNTALFVE 121
++ L +P QI + ++N+ D I A L+ A+ G + + E LK +
Sbjct: 220 VSYLMGQPLFQIAYGRVVNDVDRPIQILWQAALRTAASSEGDVPV--AEALK-----ILG 272
Query: 122 ELLLEHFSDLIKFVKTRASEDSSSTSEKP------ITVAEIEPLVKDFASRWKAAIELMH 175
+ FS ++ V T S ++ T+E+P +T A+ E L + F K ++MH
Sbjct: 273 AMTKSTFSWMVSIVGTEYSMEA--TAERPMFPMTHLTSADYELLHRLFVMWLKG--DVMH 328
Query: 176 K---DVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIK 211
DV+ + +F GM L L L+ T+L + K
Sbjct: 329 SRFFDVVANLESFTSGMCFLNRVRLALQLFVTKLDEETK 367
>sp|P0C5S6|LUXN_VIBHA Autoinducer 1 sensor kinase/phosphatase LuxN OS=Vibrio harveyi
GN=luxN PE=3 SV=1
Length = 849
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 29/101 (28%)
Query: 31 RYAEFAASLIHLNVEYGDGQLELNM-----ERLRMAVDDLLTKLAKLFPKPKSQIVFLIN 85
RYA F LI YGD + + E ++++DD + +L KL P ++ + +
Sbjct: 306 RYASF---LI-----YGDKKTPVQQILSLEEDFKLSIDDAMRRLGKLLQIPNDKLRLVTS 357
Query: 86 NYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLE 126
NY+ T YEE L SN ++ V + L E
Sbjct: 358 NYNETF----------------YEEYLSSNRSVLVFDELSE 382
>sp|A7MRY4|LUXN_VIBHB Autoinducer 1 sensor kinase/phosphatase LuxN OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=luxN PE=1 SV=1
Length = 849
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 29/101 (28%)
Query: 31 RYAEFAASLIHLNVEYGDGQLELNM-----ERLRMAVDDLLTKLAKLFPKPKSQIVFLIN 85
RYA F LI YGD + + E ++++DD + +L KL P ++ + +
Sbjct: 306 RYASF---LI-----YGDKKTPVQQILSLEEDFKLSIDDAMRRLGKLLQIPNDKLRLVTS 357
Query: 86 NYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLE 126
NY+ T YEE L SN ++ V + L E
Sbjct: 358 NYNETF----------------YEEYLSSNRSVLVFDELSE 382
>sp|Q5HBP0|DNAA_EHRRW Chromosomal replication initiator protein DnaA OS=Ehrlichia
ruminantium (strain Welgevonden) GN=dnaA PE=3 SV=1
Length = 464
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 87 YDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSSST 146
YD ++VL S E GK+ L S F++E +L H+ D I +K ED S
Sbjct: 41 YDSWLSVLLYVSTESGKVLL-------SAPTRFIKEWILVHYLDQI--LKYWQDEDQSIC 91
Query: 147 SEKPITVAEIEP-LVKDFASRWKAAIELMHKDVIT------SFSNFLCG 188
S V+ +P L+ D R I+ +V + +F NF+ G
Sbjct: 92 SVDICVVSNQDPNLLVDIKDRVDRGIKGNCDNVSSPLDPRFTFDNFVVG 140
>sp|Q5FHH8|DNAA_EHRRG Chromosomal replication initiator protein DnaA OS=Ehrlichia
ruminantium (strain Gardel) GN=dnaA PE=3 SV=1
Length = 464
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 87 YDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSSST 146
YD ++VL S E GK+ L S F++E +L H+ D I +K ED S
Sbjct: 41 YDSWLSVLLYVSTESGKVLL-------SAPTRFIKEWILVHYLDQI--LKYWQDEDQSIC 91
Query: 147 SEKPITVAEIEP-LVKDFASRWKAAIELMHKDVIT------SFSNFLCG 188
S V+ +P L+ D R I+ +V + +F NF+ G
Sbjct: 92 SVDICVVSNQDPNLLVDIKDRVDRGIKGNCDNVSSPLDPRFTFDNFVVG 140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,247,278
Number of Sequences: 539616
Number of extensions: 2979258
Number of successful extensions: 9220
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 9207
Number of HSP's gapped (non-prelim): 30
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)