Query 036632
Match_columns 240
No_of_seqs 138 out of 176
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:01:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 97.6 0.0011 3.8E-08 63.8 14.5 197 7-212 316-541 (571)
2 2b1e_A Exocyst complex compone 97.0 0.055 1.9E-06 52.0 18.8 128 77-213 411-540 (564)
3 3ajm_A Programmed cell death p 43.1 76 0.0026 26.5 7.1 62 152-216 116-177 (213)
4 1yoz_A Hypothetical protein AF 32.4 1.5E+02 0.0052 21.9 7.2 40 116-160 67-106 (116)
5 3lui_A Sorting nexin-17, SNX17 24.9 71 0.0024 23.3 3.8 48 24-71 32-91 (115)
6 3hgl_A Effector protein hopab2 24.8 68 0.0023 22.7 3.3 16 118-133 43-58 (85)
7 4az9_A Sorting nexin-24; prote 24.7 72 0.0025 24.0 3.9 50 23-72 52-110 (129)
8 2ar5_A Phosphoinositide 3-kina 22.5 76 0.0026 23.4 3.5 48 24-71 36-97 (121)
9 3iq2_A Sorting nexin-7; SNX7, 19.8 99 0.0034 23.4 3.8 49 24-72 43-108 (138)
10 4h62_V Mediator of RNA polymer 19.0 93 0.0032 17.4 2.5 16 106-121 12-27 (31)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=97.58 E-value=0.0011 Score=63.77 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=110.8
Q ss_pred HHHHhhcc-ccccCCCCCCchhHHHhHHHHHHHHHH-------hhhhcC-------------ChhHHHHHHHHHHHHHHH
Q 036632 7 LSSLRNAN-VKTLWEDDVHPHYVMRRYAEFAASLIH-------LNVEYG-------------DGQLELNMERLRMAVDDL 65 (240)
Q Consensus 7 ~~Slk~~~-~~~l~~~~~~PH~itrRyaef~~sl~~-------L~~~~~-------------~~~~~~~L~rLr~e~~~l 65 (240)
.++|++-. .+..-+.|..+|++|+--..++..|+. +-...+ ...+...+.++=...+.-
T Consensus 316 ~~~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~~y~~~l~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~ 395 (571)
T 2pft_A 316 ADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQETSSSATSYSSEFSKRLLSTYICKVLGNLQLN 395 (571)
T ss_dssp HHHHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHHHTHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCCCCCCCccchHHHHHHHHHHHHHhhHHHHHHHHhccCCCcccccCCCCCcccHHHHHHHHHHHHHHHH
Confidence 45555421 222234589999998644444333322 211110 012333566665556655
Q ss_pred HHHHHhhCCCCccceeeehhhHHHHHHHHhhcCC-----C-CchhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhh
Q 036632 66 LTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASP-----E-GGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRA 139 (240)
Q Consensus 66 l~r~s~~~~~~~~~~iFLiNNYdlIl~il~e~~~-----~-~~~~~~~f~~ll~~~~~~fVe~~L~~~F~~li~fVk~~e 139 (240)
|..-|+.++++..+.+||+||+.+|++.++.... + +..-...++...+.+...| ..-.+.+.+.+.+..
T Consensus 396 Le~ksk~y~d~~l~~iFLmNN~~yI~~~v~~s~l~~llg~~~~~~~~~~~~~i~~~~~~Y-----~~sW~~v~~~L~~~~ 470 (571)
T 2pft_A 396 LLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQQIQTY-----QRSWLKVTDYIAEKN 470 (571)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHTTTTTSTHHHHHHTTCTTHHHHHHHHHHHHHHHH-----HGGGHHHHTTTSGGG
T ss_pred HHHHHhhCCchHHHHHHHHhhHHHHHHHHhccchHHHhCcchhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcc
Confidence 6666888999999999999999999998865321 0 0111223444444444444 345555555554432
Q ss_pred hcC-CCCCCCCcccHHhHHHHHHHHHHHHHHHHHHHHHHHHh-hccCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036632 140 SED-SSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT-SFSNFLCGMEILRAALTQLLLYYTRLSDSIKR 212 (240)
Q Consensus 140 ~~~-~~~~~~~~i~~~~v~~i~~~F~~~Wk~~ie~i~~ev~~-~F~nf~~g~~ILq~~ltqll~yY~rF~~i~~~ 212 (240)
... .++..-+..+.+.++.-.+.|+. ++|++.+.... ..++=....++-+.+...++--|.+|.+-...
T Consensus 471 ~~~~~~g~~ls~~~r~~iKe~fk~Fn~----~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~ 541 (571)
T 2pft_A 471 LPVFQPGVKLRDKERQMIKERFKGFND----GLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGS 541 (571)
T ss_dssp SCSSCCCSCCCHHHHHHHHHHHHHHHH----HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcCCCCCCcCcccHHHHHHHHHHHHH----HHHHHHHhCCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 110 01111111123567777778876 66777666544 33555566677677777888899999877665
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=96.99 E-value=0.055 Score=51.97 Aligned_cols=128 Identities=13% Similarity=0.171 Sum_probs=77.0
Q ss_pred ccceeeehhhHHHHHHHHhhcCCCCch-hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhcCCCCCCCCcccHHh
Q 036632 77 KSQIVFLINNYDMTIAVLKEASPEGGK-IQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAE 155 (240)
Q Consensus 77 ~~~~iFLiNNYdlIl~il~e~~~~~~~-~~~~f~~ll~~~~~~fVe~~L~~~F~~li~fVk~~e~~~~~~~~~~~i~~~~ 155 (240)
....+||+||+.+|+..+..... +. .-..+.+.+.+..+.|. ..+....+.+.+...+....+.++. ...+.+.
T Consensus 411 ~~l~~FllNN~~yI~~~v~~SeL--~~lLg~~~~~~~~~~~~~~~-~y~~~sW~~v~~~L~~~~~~~~~~k--s~~~k~~ 485 (564)
T 2b1e_A 411 QRIGFFILMNLTLVEQIVEKSEL--NLMLAGEGHSRLERLKKRYI-SYMVSDWRDLTANLMDSVFIDSSGK--KSKDKEQ 485 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTH--HHHTTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSS--CCCCHHH
T ss_pred HHHHHHHHHhHHHHHHHHhhhhh--HhHhcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccCCCCCC--ccccHHH
Confidence 34457999999999999865321 11 01123334445555553 4445667777777776543332221 2334466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hccCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036632 156 IEPLVKDFASRWKAAIELMHKDVIT-SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRV 213 (240)
Q Consensus 156 v~~i~~~F~~~Wk~~ie~i~~ev~~-~F~nf~~g~~ILq~~ltqll~yY~rF~~i~~~~ 213 (240)
++.-.+.|+. ++|++.+.-.+ ..++-....++=+.+...++--|.+|.+-.+..
T Consensus 486 iKe~fk~FN~----~Fee~~~~q~~w~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~~ 540 (564)
T 2b1e_A 486 IKEKFRKFNE----GFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDS 540 (564)
T ss_dssp HHHHHHHHHH----HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHH----HHHHHHHhcCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7777888876 56666665433 344555556666666677778899998776653
No 3
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=43.09 E-value=76 Score=26.50 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=51.2
Q ss_pred cHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 036632 152 TVAEIEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGG 216 (240)
Q Consensus 152 ~~~~v~~i~~~F~~~Wk~~ie~i~~ev~~~F~nf~~g~~ILq~~ltqll~yY~rF~~i~~~~~~~ 216 (240)
|.......+++-++.-|.-+|.+|.-... -+.- |..-|.+==.+++-|=.||..-+|.++++
T Consensus 116 dR~~FL~tIKeIAsaIKklLDAvn~v~~~-~~~~--~k~~le~~KreFVkySKrFS~TLKeYFkd 177 (213)
T 3ajm_A 116 DRVRFLQTIKDIASAIKELLDTVNNVFKK-YQYQ--NRRALEHQKKEFVKYSKSFSDTLKTYFKD 177 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchh--HHHHHHHHHHHHHHHhhHhhHHHHHHHhc
Confidence 44677888999999999999999865444 3333 88999999999999999999999999843
No 4
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=32.35 E-value=1.5e+02 Score=21.88 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhhhcCCCCCCCCcccHHhHHHHH
Q 036632 116 TALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLV 160 (240)
Q Consensus 116 ~~~fVe~~L~~~F~~li~fVk~~e~~~~~~~~~~~i~~~~v~~i~ 160 (240)
..-|+-.||+.||..+++|.++.+...+ ...+++.++.|+
T Consensus 67 LK~YavSQL~~Hy~ri~~~l~d~e~Ki~-----kkl~~ev~~~i~ 106 (116)
T 1yoz_A 67 LKTYVVSQLSIHFERLKEFAESKGFKIE-----KKLDPEVINEIA 106 (116)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTTC---C-----CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCHHHHhHHH
Confidence 4578999999999999999999986433 222444555554
No 5
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=24.90 E-value=71 Score=23.28 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=32.5
Q ss_pred CchhHHHhHHHHHHHHHHhhhhcCCh--------hH----HHHHHHHHHHHHHHHHHHHh
Q 036632 24 HPHYVMRRYAEFAASLIHLNVEYGDG--------QL----ELNMERLRMAVDDLLTKLAK 71 (240)
Q Consensus 24 ~PH~itrRyaef~~sl~~L~~~~~~~--------~~----~~~L~rLr~e~~~ll~r~s~ 71 (240)
.+..|.|||.||..=--.|...++.. .+ ...++.=|...+.+|.++++
T Consensus 32 ~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~~~~~~ie~Rr~~Le~yL~~l~~ 91 (115)
T 3lui_A 32 GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQ 91 (115)
T ss_dssp TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 35568999999987666666554321 01 23577778888888888774
No 6
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=24.85 E-value=68 Score=22.71 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=12.1
Q ss_pred HHHHHHHhhhhhHHHH
Q 036632 118 LFVEELLLEHFSDLIK 133 (240)
Q Consensus 118 ~fVe~~L~~~F~~li~ 133 (240)
.=.-.+|.+||++|+.
T Consensus 43 r~e~~il~qHFPnm~~ 58 (85)
T 3hgl_A 43 RVEQNIFRQHFPNMPM 58 (85)
T ss_dssp HHHHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHChhhhh
Confidence 3345678899999985
No 7
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=24.72 E-value=72 Score=23.98 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=35.2
Q ss_pred CCchhHHHhHHHHHHHHHHhhhhcCChh---------HHHHHHHHHHHHHHHHHHHHhh
Q 036632 23 VHPHYVMRRYAEFAASLIHLNVEYGDGQ---------LELNMERLRMAVDDLLTKLAKL 72 (240)
Q Consensus 23 ~~PH~itrRyaef~~sl~~L~~~~~~~~---------~~~~L~rLr~e~~~ll~r~s~~ 72 (240)
.+-+.|.|||.||..=--.|...++... -...+++=|...+.+|.++...
T Consensus 52 ~~~w~V~RRYsdF~~L~~~L~~~~~~p~lP~K~~~~~~~~~ie~Rr~~Le~yL~~ll~~ 110 (129)
T 4az9_A 52 GRKHFVEKRYSEFHALHKKLKKCIKTPEIPSKHVRNWVPKVLEQRRQGLETYLQAVILE 110 (129)
T ss_dssp TEEEEEEEEHHHHHHHHHHHTTTSCCCCCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeeHHHHHHHHHHHHHhCCCCCCCcccccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 3556799999999877667766554211 1335777888899999888654
No 8
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=22.52 E-value=76 Score=23.39 Aligned_cols=48 Identities=17% Similarity=0.343 Sum_probs=33.5
Q ss_pred CchhHHHhHHHHHHHHHHhhhhcCChh--------------HHHHHHHHHHHHHHHHHHHHh
Q 036632 24 HPHYVMRRYAEFAASLIHLNVEYGDGQ--------------LELNMERLRMAVDDLLTKLAK 71 (240)
Q Consensus 24 ~PH~itrRyaef~~sl~~L~~~~~~~~--------------~~~~L~rLr~e~~~ll~r~s~ 71 (240)
....|.|||.||..=--.|...+|... ....+++=|.+++.+|.++.+
T Consensus 36 ~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g~~~~~~~~e~Rr~~Le~yL~~ll~ 97 (121)
T 2ar5_A 36 EPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDVAAKRKIELNSYLQSLMN 97 (121)
T ss_dssp SCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSSSSSTTHHHHHHHHHHHHHHHHHHT
T ss_pred eeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecCccCcHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999987777777654321 113456666788888877753
No 9
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=19.79 E-value=99 Score=23.38 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=33.7
Q ss_pred CchhHHHhHHHHHHHHHHhhhhcCC--------hhH---------HHHHHHHHHHHHHHHHHHHhh
Q 036632 24 HPHYVMRRYAEFAASLIHLNVEYGD--------GQL---------ELNMERLRMAVDDLLTKLAKL 72 (240)
Q Consensus 24 ~PH~itrRyaef~~sl~~L~~~~~~--------~~~---------~~~L~rLr~e~~~ll~r~s~~ 72 (240)
....|.|||.||..=--.|...++. ..+ ...+++=|..++.+|.++++.
T Consensus 43 ~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~~~~fie~Rr~~Le~fL~~l~~~ 108 (138)
T 3iq2_A 43 SEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADH 108 (138)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCGGGCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhccccccCCHHHHHHHHHHHHHHHHHHHcC
Confidence 4566999999998766666655432 111 225777788899999998864
No 10
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=19.01 E-value=93 Score=17.42 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 036632 106 LHYEELLKSNTALFVE 121 (240)
Q Consensus 106 ~~f~~ll~~~~~~fVe 121 (240)
..++++|..+++-||-
T Consensus 12 kqieelldncietfva 27 (31)
T 4h62_V 12 KQIEELLDNCIETFVA 27 (31)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4688999999988874
Done!