BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036633
(550 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 102/207 (49%), Gaps = 19/207 (9%)
Query: 166 KLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKP 225
+L V E+IAE+ S+ TGIP S E+ +R++ L KRV GQ++AI + +A+ +
Sbjct: 518 RLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA 577
Query: 226 KAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285
+A K R +G FLF GP GK ELAK +A L+D + +I DM Y E +
Sbjct: 578 RAGLK--DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEA---MIRIDMTEYMEKHA 632
Query: 286 IKHFFDS------------LAALVKKRPYSVVLFDKIEKAXXXXXXXXXXXXXTDFNRKA 333
+ + L V++RPYSV+LFD+IEKA D R
Sbjct: 633 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA--HPDVFNILLQILDDGRLT 690
Query: 334 TRGIAAFDLTNTLIIMTSDLKDEQVYE 360
D NT+II+TS+L + E
Sbjct: 691 DSHGRTVDFRNTVIILTSNLGSPLILE 717
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 9/199 (4%)
Query: 164 KEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALT 223
+E V V++IA V S TG+P S ++ + ++ L RV GQ++A+ + +A+
Sbjct: 449 QENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVR 508
Query: 224 KPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL 283
+ +A K +R +G F+F GP GK ELA+A+A ++ + ++ +I DM Y E
Sbjct: 509 RARAGLK--DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEES---MIRIDMSEYMEK 563
Query: 284 ESIKHFFDSLAALVKKRPYSVVLFDKIEKAXXXXXXXXXXXXXTDFNRKATRGIAAFDLT 343
S L V+++PYSVVL D IEKA D ++G D
Sbjct: 564 HSTSG--GQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLE-DGRLTDSKG-RTVDFR 619
Query: 344 NTLIIMTSDLKDEQVYEVM 362
NT++IMTS++ + +VM
Sbjct: 620 NTILIMTSNVGASEKDKVM 638
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 78/167 (46%), Gaps = 19/167 (11%)
Query: 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDN 265
KRV GQ++AI + +A+ + +A K R +G FLF GP GK ELAK +A L+D
Sbjct: 14 KRVVGQDEAIRAVADAIRRARAGLK--DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 71
Query: 266 NDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVLFDKIEKA 313
+ +I DM Y E ++ + L V++RPYSV+LFD IEKA
Sbjct: 72 EEA---MIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA 128
Query: 314 XXXXXXXXXXXXXTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360
D R D NT+II+TS+L + E
Sbjct: 129 --HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILE 173
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 76/167 (45%), Gaps = 19/167 (11%)
Query: 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDN 265
KRV GQ++AI + +A+ + +A K R +G FLF GP GK ELAK +A L+D
Sbjct: 17 KRVVGQDEAIRAVADAIRRARAGLK--DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74
Query: 266 NDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVLFDKIEKA 313
+ I D Y E ++ + L V++RPYSV+LFD IEKA
Sbjct: 75 EEA---XIRIDXTEYXEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA 131
Query: 314 XXXXXXXXXXXXXTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360
D R D NT+II TS+L + E
Sbjct: 132 HPDVFNILLQXL--DDGRLTDSHGRTVDFRNTVIIXTSNLGSPLILE 176
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 87/186 (46%), Gaps = 35/186 (18%)
Query: 150 KILDQID-----ARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRL 204
K +D ID AR+ K K V+V +I V +++ IP + + RL
Sbjct: 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRL 456
Query: 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLS-SRRQLGLFLFAGPNCSGKAE----LAKAIA 259
K VFGQ+ AI+ + EA+ K A+ GL + +G FLFAGP GK E L+KA+
Sbjct: 457 KMLVFGQDKAIEALTEAI---KMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513
Query: 260 NELYDNNDNDNHLIHFDMGNYTELESIKHF---------FDSLAAL---VKKRPYSVVLF 307
E L+ FDM Y E ++ FD L V K P++V+L
Sbjct: 514 IE----------LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLL 563
Query: 308 DKIEKA 313
D+IEKA
Sbjct: 564 DEIEKA 569
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 230 KGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF 289
KG R+ + LF+GP +GK A A+A +L+ N DN I + + ++ ++H
Sbjct: 30 KGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDN-FIEMNASDERGIDVVRHK 88
Query: 290 FDSLA--ALVKKRPYSVVLFDK 309
A A + P+ ++ D+
Sbjct: 89 IKEFARTAPIGGAPFKIIFLDE 110
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 230 KGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF 289
KG R+ + LF+GP +GK A A+A +L+ N DN I + + ++ ++H
Sbjct: 30 KGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDN-FIEMNASDERGIDVVRHK 88
Query: 290 FDSLA--ALVKKRPYSVVLFDK 309
A A + P+ ++ D+
Sbjct: 89 IKEFARTAPIGGAPFKIIFLDE 110
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 23/125 (18%)
Query: 198 MRVQGRLKKRVFGQNDAIDVIFEALTK--PKAAKKGLSSR------RQLGLFLFAGPNCS 249
+R GR + VF Q ++ +L P+ K GL + R++GL L GP S
Sbjct: 88 VRGVGRFRANVFYQRGSVAAALRSLPAEIPEFKKLGLPDKVLELCHRKMGLILVTGPTGS 147
Query: 250 GKAELAKAIANELYDNNDNDNHLIHFD------------MGNYTEL-ESIKHFFDSLAAL 296
GK+ ++ + Y N H+I + + N E+ E K F D+L A
Sbjct: 148 GKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAA 205
Query: 297 VKKRP 301
+++ P
Sbjct: 206 LREDP 210
>pdb|2EWW|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Atp
Length = 372
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 198 MRVQGRLKKRVFGQNDAIDVIFEALTK--PKAAKKGLSSR------RQLGLFLFAGPNCS 249
+R GR + VF Q ++ +L P+ K GL + R+ GL L GP S
Sbjct: 88 VRGVGRFRANVFYQRGSVAAALRSLPAEIPEFKKLGLPDKVLELCHRKXGLILVTGPTGS 147
Query: 250 GKAELAKAIANEL-YDNNDNDNHLIHFD------------MGNYTEL-ESIKHFFDSLAA 295
GK + IA+ + Y N H+I + + N E+ E K F D+L A
Sbjct: 148 GK---STTIASXIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRA 204
Query: 296 LVKKRP 301
+++ P
Sbjct: 205 ALREDP 210
>pdb|2GSZ|A Chain A, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|B Chain B, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|C Chain C, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|D Chain D, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|E Chain E, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|F Chain F, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
Length = 363
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 198 MRVQGRLKKRVFGQNDAIDVIFEALTK--PKAAKKGLSSR------RQLGLFLFAGPNCS 249
+R GR + VF Q ++ +L P+ K GL + R+ GL L GP S
Sbjct: 77 VRGVGRFRANVFYQRGSVAAALRSLPAEIPEFKKLGLPDKVLELCHRKXGLILVTGPTGS 136
Query: 250 GKAELAKAIANEL-YDNNDNDNHLIHFD------------MGNYTEL-ESIKHFFDSLAA 295
GK + IA+ + Y N H+I + + N E+ E K F D+L A
Sbjct: 137 GK---STTIASXIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRA 193
Query: 296 LVKKRP 301
+++ P
Sbjct: 194 ALREDP 199
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 242 LFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS----LAALV 297
L GP +GK LAKA+A E H+ F MG + +E S L
Sbjct: 48 LLVGPPGTGKTLLAKAVAGEA--------HVPFFSMGGSSFIEMFVGLGASRVRDLFETA 99
Query: 298 KKRPYSVVLFDKIE 311
KK+ S++ D+I+
Sbjct: 100 KKQAPSIIFIDEID 113
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 233 SSRRQLGLFLFAGPNCSGKAELAKAIANELYDN--NDNDNHLIHFDMGNYTELESIKHFF 290
+R+ L GP +GK+ LAKA+A E + + + L+ MG +L +K F
Sbjct: 46 GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKL--VKQLF 103
Query: 291 DSLAALVKKRPYSVVLFDKIE 311
A+ ++ S++ D+++
Sbjct: 104 ----AMARENKPSIIFIDQVD 120
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 233 SSRRQLGLFLFAGPNCSGKAELAKAIANELYDN--NDNDNHLIHFDMGNYTELESIKHFF 290
+R+ L GP +GK+ LAKA+A E + + + L+ MG +L +K F
Sbjct: 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKL--VKQLF 136
Query: 291 DSLAALVKKRPYSVVLFDKIE 311
A+ ++ S++ D+++
Sbjct: 137 ----AMARENKPSIIFIDQVD 153
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 233 SSRRQLGLFLFAGPNCSGKAELAKAIANELYDN--NDNDNHLIHFDMGNYTELESIKHFF 290
+R+ L GP +GK+ LAKA+A E + + + L+ MG +L +K F
Sbjct: 55 GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKL--VKQLF 112
Query: 291 DSLAALVKKRPYSVVLFDKIE 311
A+ ++ S++ D+++
Sbjct: 113 ----AMARENKPSIIFIDEVD 129
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 233 SSRRQLGLFLFAGPNCSGKAELAKAIANELYDN--NDNDNHLIHFDMGNYTELESIKHFF 290
+R+ L GP +GK+ LAKA+A E + + + L+ MG +L +K F
Sbjct: 64 GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKL--VKQLF 121
Query: 291 DSLAALVKKRPYSVVLFDKIE 311
A+ ++ S++ D+++
Sbjct: 122 ----AMARENKPSIIFIDQVD 138
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQL--GLFLFAGPNCSGKAELAKAIANELYDN 265
V G A + + EA+ P + +R G+ LF GP +GK+ LAKA+A E ++
Sbjct: 136 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLF-GPPGTGKSYLAKAVATEANNS 194
Query: 266 ---NDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIE 311
+ + + L+ +G +L +K+ F L ++ S++ D+I+
Sbjct: 195 TFFSISSSDLVSKWLGESEKL--VKNLFQ----LARENKPSIIFIDEID 237
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQL--GLFLFAGPNCSGKAELAKAIANELYDN 265
V G A + + EA+ P + +R G+ LF GP +GK+ LAKA+A E ++
Sbjct: 14 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLF-GPPGTGKSYLAKAVATEANNS 72
Query: 266 ---NDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIE 311
+ + + L+ +G +L +K+ F L ++ S++ D+I+
Sbjct: 73 TFFSISSSDLVSKWLGESEKL--VKNLFQ----LARENKPSIIFIDEID 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,690,349
Number of Sequences: 62578
Number of extensions: 506445
Number of successful extensions: 1316
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 20
length of query: 550
length of database: 14,973,337
effective HSP length: 104
effective length of query: 446
effective length of database: 8,465,225
effective search space: 3775490350
effective search space used: 3775490350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)