BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036633
(550 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7CQ01|CLPB_SALTY Chaperone protein ClpB OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=clpB PE=3 SV=1
Length = 857
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 199/414 (48%), Gaps = 56/414 (13%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H +QI D A+ A+ ++ R A +L ++ ID++ + D +ELD+
Sbjct: 361 HHVQITDPAIVAAATLSH--RYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRR 418
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKD---AFFELVSFVKLR---------MQ 129
+ + +E + L+KE + S + L ++ EL D + EL K ++
Sbjct: 419 IIQLKLEQQALMKESDEASKKR--LDMLNEELDDKERQYSELEEEWKAEKASLSGTQTIK 476
Query: 130 VEYDDFVSCVHDAKRVKD--------YSKILD---QIDARVHGKFKE----KLAVDVEEI 174
E + + A+RV D Y KI + Q++A + K + V EI
Sbjct: 477 AELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQSEGKTMRLLRNKVTDAEI 536
Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS- 233
AEV ++ TGIP S E+ +R++ L RV GQN+A++ + A+ + +A GLS
Sbjct: 537 AEVLARWTGIPVSRMLEGEREKLLRMEQELHSRVIGQNEAVEAVSNAIRRSRA---GLSD 593
Query: 234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
R +G FLF GP GK EL KA+AN ++ D+D+ ++ DM + E S+ +
Sbjct: 594 PNRPIGSFLFLGPTGVGKTELCKALANFMF---DSDDAMVRIDMSEFMEKHSVSRLVGAP 650
Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
L V++RPYSV+L D++EKA+ + N+LL++L D R D
Sbjct: 651 PGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRTVD 708
Query: 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKPSLLKLLDKLVV 391
NT++IMTS+L + + E YGR+ E V F+P + +D++VV
Sbjct: 709 FRNTVVIMTSNLGSDLIQERFGELDYGRMKEMVLGVVSQNFRPEFINRIDEVVV 762
>sp|Q7AMH5|CLPB_SALTI Chaperone protein ClpB OS=Salmonella typhi GN=clpB PE=3 SV=1
Length = 857
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 199/414 (48%), Gaps = 56/414 (13%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H +QI D A+ A+ ++ R A +L ++ ID++ + D +ELD+
Sbjct: 361 HHVQITDPAIVAAATLSH--RYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRR 418
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKD---AFFELVSFVKLR---------MQ 129
+ + +E + L+KE + S + L ++ EL D + EL K ++
Sbjct: 419 IIQLKLEQQALMKESDEASKKR--LDMLNEELDDKERQYSELEEEWKAEKASLSGTQTIK 476
Query: 130 VEYDDFVSCVHDAKRVKD--------YSKILD---QIDARVHGKFKE----KLAVDVEEI 174
E + + A+RV D Y KI + Q++A + K + V EI
Sbjct: 477 AELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQSEGKTMRLLRNKVTDAEI 536
Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS- 233
AEV ++ TGIP S E+ +R++ L RV GQN+A++ + A+ + +A GLS
Sbjct: 537 AEVLARWTGIPVSRMLEGEREKLLRMEQELHSRVIGQNEAVEAVSNAIRRSRA---GLSD 593
Query: 234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
R +G FLF GP GK EL KA+AN ++ D+D+ ++ DM + E S+ +
Sbjct: 594 PNRPIGSFLFLGPTGVGKTELCKALANFMF---DSDDAMVRIDMSEFMEKHSVSRLVGAP 650
Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
L V++RPYSV+L D++EKA+ + N+LL++L D R D
Sbjct: 651 PGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRTVD 708
Query: 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKPSLLKLLDKLVV 391
NT++IMTS+L + + E YGR+ E V F+P + +D++VV
Sbjct: 709 FRNTVVIMTSNLGSDLIQERFGELDYGRMKEMVLGVVSQNFRPEFINRIDEVVV 762
>sp|Q8PHQ4|CLPB_XANAC Chaperone protein ClpB OS=Xanthomonas axonopodis pv. citri (strain
306) GN=clpB PE=3 SV=2
Length = 861
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 122/417 (29%), Positives = 203/417 (48%), Gaps = 59/417 (14%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H ++I D A+ A+ ++ R +L ++ ID++ + R D +ELD+ +
Sbjct: 361 HGVEITDPAIVAAATLSN--RYITDRQLPDKAIDLMDEAASRIRMEIDSKPEELDRLERR 418
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQID-NELKDAFFELVSF-----------VKLRMQ 129
L + ++ E L KE D S + + D ++L+ F++L K++ Q
Sbjct: 419 LIQLKIQREMLKKEKDDASRQRLADLETDIDKLEREFYDLNELWKSEKAALQGTTKVKEQ 478
Query: 130 VEYDDFVSCVHDAKRVKDYSK-------ILDQIDARV-------HGKFK-EKLAVDVEEI 174
+E+ + A+R +DY+K +L Q++ ++ H FK + V EEI
Sbjct: 479 IEHAKL--ELEAAQRRQDYAKMSEIQYGVLPQLEKQMALANEVEHHDFKLVQDRVTAEEI 536
Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS- 233
AEV S+ TGIP + ++ +R++ L RV GQN+AI V+ +A+ + +A GLS
Sbjct: 537 AEVVSRWTGIPVNKMLEGERDKLLRMEDELHHRVVGQNEAIKVVSDAVRRSRA---GLSD 593
Query: 234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
R G FLF GP GK EL KA+A+ L+D+ + +I DM + E S+ +
Sbjct: 594 PNRPSGSFLFLGPTGVGKTELCKALADFLFDSTEA---MIRIDMSEFMEKHSVARLIGAP 650
Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
L V++RPYS++L D++EKA+ + N+LL++L D R D
Sbjct: 651 PGYVGYEEGGYLTEAVRRRPYSLILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRTVD 708
Query: 342 LTNTLIIMTSDLKDEQVYEV-------MLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
NT+I+MTS+L Q+ E+ T V V + F+P + LD +VV
Sbjct: 709 FRNTVIVMTSNLGSHQIQELSGDDSAEAYTQMKAAVMGVVQAHFRPEFINRLDDIVV 765
>sp|Q9PGC1|CLPB_XYLFA Chaperone protein ClpB OS=Xylella fastidiosa (strain 9a5c) GN=clpB
PE=3 SV=1
Length = 861
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 121/418 (28%), Positives = 198/418 (47%), Gaps = 61/418 (14%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H ++I D A+ A+ ++ R +L ++ ID++ + R D +ELD+ +
Sbjct: 361 HGVEITDPAIVAAATLSN--RYITDRQLPDKAIDLMDEAASRIRMEIDSKPEELDRLERR 418
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFE------------LVSFVKLRMQ 129
L + ++ E L KE + S + + D E+ D F L K++
Sbjct: 419 LIQLKIQREMLKKEKDEASKQRLADLERDIEVLDREFSDLEEVWRSEKAALQGATKIKES 478
Query: 130 VEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLA----------------VDVEE 173
+E + A+R +DY+K + +I V +++L V EE
Sbjct: 479 IEQAKL--DLEAAQRRQDYAK-MSEIQYGVLPALEKQLVAASQAEQHDFTLVQEKVTAEE 535
Query: 174 IAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS 233
IAEV S+ TGIP S ++ +R++ L +RV GQ +AI V+ +A+ + ++ GLS
Sbjct: 536 IAEVVSRWTGIPVSKMLEGERDKLLRMEADLGRRVVGQEEAIKVVSDAVRR---SRTGLS 592
Query: 234 -SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS 292
R G FLF GP GK EL KA+A L+D+ D ++ DM + E S+ +
Sbjct: 593 DPNRPSGSFLFLGPTGVGKTELCKALAEFLFDSQDA---MVRIDMSEFMEKHSVARLIGA 649
Query: 293 ------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340
L LV++RPYS++L D++EKA+S + N+LL++L D R
Sbjct: 650 PPGYVGYEEGGYLTELVRRRPYSLILLDEVEKAHSDVFNILLQVL--DDGRLTDGQGRTV 707
Query: 341 DLTNTLIIMTSDLKDEQVYEV-------MLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
D NT+I+MTS+L Q+ E+ + T V EV + F+P + LD +VV
Sbjct: 708 DFRNTVIVMTSNLGSHQIQELSGDDSPEVYTQMKAAVMEVVQAHFRPEFINRLDDIVV 765
>sp|P42730|CLPB1_ARATH Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2
Length = 911
Score = 142 bits (357), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 141/490 (28%), Positives = 231/490 (47%), Gaps = 78/490 (15%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSR---DKYQKELDKH 78
H ++IQD AL A++++ R L ++ ID++ + C N R D +E+D
Sbjct: 362 HGVRIQDRALINAAQLSA--RYITGRHLPDKAIDLVDEA---CANVRVQLDSQPEEIDNL 416
Query: 79 KYFLRRAVVEYEQLVKE-DTDHSSRSFWLRQIDNELKDAFFELVSFVK---------LRM 128
+ + +E L +E D +R +R+ ++L+D L + R+
Sbjct: 417 ERKRMQLEIELHALEREKDKASKARLIEVRKELDDLRDKLQPLTMKYRKEKERIDEIRRL 476
Query: 129 QVEYDDFVSCVHDAKRVKDYSKILD----------QIDARVHGKFKEKLA-----VDVEE 173
+ + ++ + + +A+R D ++ D A++ G E+ V E
Sbjct: 477 KQKREELMFSLQEAERRYDLARAADLRYGAIQEVESAIAQLEGTSSEENVMLTENVGPEH 536
Query: 174 IAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS 233
IAEV S+ TGIP + +ER + + RL KRV GQN A++ + EA+ + +A GL
Sbjct: 537 IAEVVSRWTGIPVTRLGQNEKERLIGLADRLHKRVVGQNQAVNAVSEAILRSRA---GLG 593
Query: 234 SRRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS 292
+Q G FLF GP GK ELAKA+A +L+ D++N L+ DM Y E S+ +
Sbjct: 594 RPQQPTGSFLFLGPTGVGKTELAKALAEQLF---DDENLLVRIDMSEYMEQHSVSRLIGA 650
Query: 293 ------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340
L V++RPY V+LFD++EKA+ ++ N LL++L D R
Sbjct: 651 PPGYVGHEEGGQLTEAVRRRPYCVILFDEVEKAHVAVFNTLLQVL--DDGRLTDGQGRTV 708
Query: 341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVN-EVTGSL--------FKPSLLKLLDKLVV 391
D N++IIMTS+L E +L G+V EV F+P LL LD++VV
Sbjct: 709 DFRNSVIIMTSNLGAEH----LLAGLTGKVTMEVARDCVMREVRKHFRPELLNRLDEIVV 764
Query: 392 IDLAV--PLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI-ASNAARKYGQNG 448
D L RL +++ A +R V + + +AL +I A + YG
Sbjct: 765 FDPLSHDQLRKVARLQMKDVAVRLAER------GVALAVTDAALDYILAESYDPVYG--A 816
Query: 449 EGLKRWMDQR 458
++RWM+++
Sbjct: 817 RPIRRWMEKK 826
>sp|Q7X2S8|CLPB_MEIRU Chaperone protein ClpB OS=Meiothermus ruber GN=clpB PE=3 SV=1
Length = 854
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 203/416 (48%), Gaps = 60/416 (14%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKR---CLNSRDKYQKELDKH 78
H ++I D AL A++++ R A +L ++ ID++ + R L S + L++
Sbjct: 352 HGVRISDPALIAAAQLSH--RYIADRKLPDKAIDLVDEAAARLRMALESSPESIDALNRR 409
Query: 79 KYFLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVS-----------FVKLR 127
K L +E E L KE TD S+ F L +++ E+ D E+ KLR
Sbjct: 410 KLQLE---IEREALKKE-TDAESK-FRLGELEKEIADLEEEIRKQQAEWEAEREIMQKLR 464
Query: 128 M-QVEYDDFVSCVHDAKRVKDYSKI--------------LDQIDARVHGKFKEKLAVDVE 172
Q D+ + + A+R D +K ++++ R+ G + V E
Sbjct: 465 AAQQRLDEVRTQIEQAERAYDLNKAAPLRYGELPKLEQEVNELADRMAGAQFVRPMVTEE 524
Query: 173 EIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL 232
+IA + S+ TGIP + E+ +R++ L KRV GQ++AI + +A+ + +A K
Sbjct: 525 DIAAIVSRWTGIPVAKLMEGEREKLLRLEDELHKRVVGQDEAIVAVADAIRRARAGLK-- 582
Query: 233 SSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS 292
R +G FLF GP GK ELAK +A L+D +N ++ DM Y E ++ +
Sbjct: 583 DPNRPIGSFLFLGPTGVGKTELAKTLAASLFDTEEN---MVRIDMSEYQEKHTVARLIGA 639
Query: 293 ------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340
L V++RPYSV+LFD+IEKA+ + N+LL++L D R
Sbjct: 640 PPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNVLLQVL--DDGRLTDGQGRTV 697
Query: 341 DLTNTLIIMTSDLKDEQVYEVMLTA-TYGRVNE-VTGSL---FKPSLLKLLDKLVV 391
D NT+II+TS++ ++E + + +Y + E V G L F+P L LD++VV
Sbjct: 698 DFRNTVIILTSNIGSPLIFEGIQSGQSYETIRERVFGVLQQHFRPEFLNRLDEIVV 753
>sp|Q9CKC0|CLPB_PASMU Chaperone protein ClpB OS=Pasteurella multocida (strain Pm70)
GN=clpB PE=3 SV=1
Length = 855
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 199/413 (48%), Gaps = 55/413 (13%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H +QI D A+ A+ ++ R + +L ++ ID++ + D + LD+ +
Sbjct: 360 HHVQITDPAIVAAATLSH--RYVSDRQLPDKAIDLIDEAASSIRMEIDSKPQPLDRLERR 417
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQID-NELKDAFFELVSFVKL---------RMQVE 131
+ + +E + L KED D S + + + + E + + EL K ++ E
Sbjct: 418 IIQLKLEQQALQKEDDDASRKRLAMLEKELGEKEREYAELEDVWKAEKAALSGTQHIKAE 477
Query: 132 YDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLA----------------VDVEEIA 175
D + + A+R D++K + ++ V +++LA V EEIA
Sbjct: 478 LDSAKTQMEQARRASDFAK-MSELQYGVIPALEKQLAQAESAEGKEMTLLRYRVTDEEIA 536
Query: 176 EVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS-S 234
EV S+ TGIP + +E+ +R++ L KRV GQ++AI+ + A+ + +A GLS
Sbjct: 537 EVLSRATGIPVAKMMEGEKEKLLRMEEELHKRVIGQHEAIEAVSNAIRRSRA---GLSDP 593
Query: 235 RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS-- 292
R +G FLF GP GK EL K +AN L+ D++N ++ DM + E S+ +
Sbjct: 594 NRPIGSFLFLGPTGVGKTELCKTLANFLF---DDENAMVRIDMSEFMEKHSVSRLVGAPP 650
Query: 293 ----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342
L V++RPYSV+L D++EKA+ + N+LL++L D R D
Sbjct: 651 GYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHHDVFNILLQVL--DDGRLTDGQGRTVDF 708
Query: 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKPSLLKLLDKLVV 391
NT++IMTS+L + E T Y + E V G F+P + +D+ VV
Sbjct: 709 RNTVVIMTSNLGSHLIQENS-TLDYPSMKELVMSVVGQHFRPEFINRIDETVV 760
>sp|Q87AX8|CLPB_XYLFT Chaperone protein ClpB OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=clpB PE=3 SV=1
Length = 861
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 198/418 (47%), Gaps = 61/418 (14%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H ++I D A+ A+ ++ R +L ++ ID++ + R D +ELD+ +
Sbjct: 361 HGVEITDPAIVAAATLSN--RYITDRQLPDKAIDLMDEAASRIRMEIDSKPEELDRLERR 418
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFE------------LVSFVKLRMQ 129
L + ++ E L KE + S + + D E+ D F L K++
Sbjct: 419 LIQLKIQREMLKKEKDEASKQRLVDLERDIEVLDREFSDLEEVWRSEKAALQGATKIKES 478
Query: 130 VEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLA----------------VDVEE 173
+E + A+R +DY+K + +I V +++L V EE
Sbjct: 479 IEQAKL--DLEAAQRRQDYAK-MSEIQYGVLPALEKQLVAASQAEQHDFTLVQEKVTAEE 535
Query: 174 IAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS 233
IAEV S+ TGIP S ++ +R++ L +RV GQ++AI V+ +A+ + ++ GLS
Sbjct: 536 IAEVVSRWTGIPVSKMLEGERDKLLRMEADLGRRVVGQDEAIKVVSDAVRR---SRTGLS 592
Query: 234 -SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS 292
R G FLF GP GK EL KA+A L+D+ D ++ DM + E S+ +
Sbjct: 593 DPNRPSGSFLFLGPTGVGKTELCKALAEFLFDSQDA---MVRIDMSEFMEKHSVARLIGA 649
Query: 293 ------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340
L LV++RPYS++L D++EKA+S + N+LL++L D R
Sbjct: 650 PPGYVGYEEGGYLTELVRRRPYSLILLDEVEKAHSDVFNILLQVL--DDGRLTDGQGRTV 707
Query: 341 DLTNTLIIMTSDLKDEQVYEV-------MLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
D NT+I+MTS+L Q+ E+ + T V V + F+P + LD +VV
Sbjct: 708 DFRNTVIVMTSNLGSHQIQELSGDDSPEVYTQMKAAVMGVVQAHFRPEFINRLDDIVV 765
>sp|Q7UBW5|CLPB_SHIFL Chaperone protein ClpB OS=Shigella flexneri GN=clpB PE=3 SV=2
Length = 857
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 122/418 (29%), Positives = 200/418 (47%), Gaps = 56/418 (13%)
Query: 18 LEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDK 77
E +H +QI D A+ A+ ++ R A +L ++ ID++ + D +ELD+
Sbjct: 357 FELLHHVQITDPAIVAAATLSH--RYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDR 414
Query: 78 HKYFLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKD---AFFELVSFVKLR------- 127
+ + +E + L+KE + S + L ++ EL D + EL K
Sbjct: 415 LDRRIIQLKLEQQALMKESDEASKKR--LDMLNEELSDKERQYSELEEEWKAEKASLSGT 472
Query: 128 --MQVEYDDFVSCVHDAKRVKD--------YSKILD---QIDA--RVHGKFKEKL--AVD 170
++ E + + A+RV D Y KI + Q++A ++ GK L V
Sbjct: 473 QTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVT 532
Query: 171 VEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKK 230
EIAEV ++ TGIP S E+ +R++ L RV GQN+A+D + A+ + +A
Sbjct: 533 DAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRA--- 589
Query: 231 GLS-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF 289
GL+ R +G FLF GP GK EL KA+AN ++ D+D ++ DM + E S+
Sbjct: 590 GLADPNRPIGSFLFLGPTGVGKTELCKALANFMF---DSDEAMVRIDMSEFMEKHSVSRL 646
Query: 290 FDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGI 337
+ L V++RPYSV+L D++EKA+ + N+LL++L D R
Sbjct: 647 VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQG 704
Query: 338 AAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKPSLLKLLDKLVV 391
D NT++IMTS+L + + E Y + E V F+P + +D++VV
Sbjct: 705 RTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVV 762
>sp|P63284|CLPB_ECOLI Chaperone protein ClpB OS=Escherichia coli (strain K12) GN=clpB
PE=1 SV=1
Length = 857
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 198/414 (47%), Gaps = 56/414 (13%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H +QI D A+ A+ ++ R A +L ++ ID++ + D +ELD+
Sbjct: 361 HHVQITDPAIVAAATLSH--RYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRR 418
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKD---AFFELVSFVKLR---------MQ 129
+ + +E + L+KE + S + L ++ EL D + EL K ++
Sbjct: 419 IIQLKLEQQALMKESDEASKKR--LDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIK 476
Query: 130 VEYDDFVSCVHDAKRVKD--------YSKILD---QIDA--RVHGKFKEKL--AVDVEEI 174
E + + A+RV D Y KI + Q++A ++ GK L V EI
Sbjct: 477 AELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEI 536
Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS- 233
AEV ++ TGIP S E+ +R++ L RV GQN+A+D + A+ + +A GL+
Sbjct: 537 AEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRA---GLAD 593
Query: 234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
R +G FLF GP GK EL KA+AN ++ D+D ++ DM + E S+ +
Sbjct: 594 PNRPIGSFLFLGPTGVGKTELCKALANFMF---DSDEAMVRIDMSEFMEKHSVSRLVGAP 650
Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
L V++RPYSV+L D++EKA+ + N+LL++L D R D
Sbjct: 651 PGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRTVD 708
Query: 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKPSLLKLLDKLVV 391
NT++IMTS+L + + E Y + E V F+P + +D++VV
Sbjct: 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVV 762
>sp|P63286|CLPB_ECOL6 Chaperone protein ClpB OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=clpB PE=3 SV=1
Length = 857
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 198/414 (47%), Gaps = 56/414 (13%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H +QI D A+ A+ ++ R A +L ++ ID++ + D +ELD+
Sbjct: 361 HHVQITDPAIVAAATLSH--RYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRR 418
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKD---AFFELVSFVKLR---------MQ 129
+ + +E + L+KE + S + L ++ EL D + EL K ++
Sbjct: 419 IIQLKLEQQALMKESDEASKKR--LDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIK 476
Query: 130 VEYDDFVSCVHDAKRVKD--------YSKILD---QIDA--RVHGKFKEKL--AVDVEEI 174
E + + A+RV D Y KI + Q++A ++ GK L V EI
Sbjct: 477 AELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEI 536
Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS- 233
AEV ++ TGIP S E+ +R++ L RV GQN+A+D + A+ + +A GL+
Sbjct: 537 AEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRA---GLAD 593
Query: 234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
R +G FLF GP GK EL KA+AN ++ D+D ++ DM + E S+ +
Sbjct: 594 PNRPIGSFLFLGPTGVGKTELCKALANFMF---DSDEAMVRIDMSEFMEKHSVSRLVGAP 650
Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
L V++RPYSV+L D++EKA+ + N+LL++L D R D
Sbjct: 651 PGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRTVD 708
Query: 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKPSLLKLLDKLVV 391
NT++IMTS+L + + E Y + E V F+P + +D++VV
Sbjct: 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVV 762
>sp|P63285|CLPB_ECO57 Chaperone protein ClpB OS=Escherichia coli O157:H7 GN=clpB PE=3
SV=1
Length = 857
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 198/414 (47%), Gaps = 56/414 (13%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H +QI D A+ A+ ++ R A +L ++ ID++ + D +ELD+
Sbjct: 361 HHVQITDPAIVAAATLSH--RYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRR 418
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKD---AFFELVSFVKLR---------MQ 129
+ + +E + L+KE + S + L ++ EL D + EL K ++
Sbjct: 419 IIQLKLEQQALMKESDEASKKR--LDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIK 476
Query: 130 VEYDDFVSCVHDAKRVKD--------YSKILD---QIDA--RVHGKFKEKL--AVDVEEI 174
E + + A+RV D Y KI + Q++A ++ GK L V EI
Sbjct: 477 AELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEI 536
Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS- 233
AEV ++ TGIP S E+ +R++ L RV GQN+A+D + A+ + +A GL+
Sbjct: 537 AEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRA---GLAD 593
Query: 234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
R +G FLF GP GK EL KA+AN ++ D+D ++ DM + E S+ +
Sbjct: 594 PNRPIGSFLFLGPTGVGKTELCKALANFMF---DSDEAMVRIDMSEFMEKHSVSRLVGAP 650
Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
L V++RPYSV+L D++EKA+ + N+LL++L D R D
Sbjct: 651 PGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRTVD 708
Query: 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKPSLLKLLDKLVV 391
NT++IMTS+L + + E Y + E V F+P + +D++VV
Sbjct: 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVV 762
>sp|Q8P6A0|CLPB_XANCP Chaperone protein ClpB OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=clpB PE=3
SV=1
Length = 861
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 121/417 (29%), Positives = 201/417 (48%), Gaps = 59/417 (14%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H ++I D A+ A+ ++ R +L ++ ID++ + R D +ELD+ +
Sbjct: 361 HGVEITDPAIVAAATLSN--RYITDRQLPDKAIDLMDEAASRIRMEIDSKPEELDRLERR 418
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQID-----------NEL-KDAFFELVSFVKLRMQ 129
L + ++ E L KE + S + + D NE+ K L K++ Q
Sbjct: 419 LIQLKIQREMLKKEKDEASRQRLADLESDIDKLEREFSDLNEVWKSEKAALQGTTKIKEQ 478
Query: 130 VEYDDFVSCVHDAKRVKDYSK-------ILDQIDARV-------HGKFK-EKLAVDVEEI 174
+E+ + A+R +DY+K +L Q++ ++ H FK + V EEI
Sbjct: 479 IEHAKL--ELEAAQRRQDYAKMSEIQYGVLPQLEKQMLLANEVEHHDFKLVQDRVTAEEI 536
Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS- 233
AEV S+ TGIP + ++ +R++ L +RV GQ +AI V+ +A+ + +A GLS
Sbjct: 537 AEVVSRWTGIPVNKMLEGERDKLLRMEDELHRRVVGQEEAIKVVSDAVRRSRA---GLSD 593
Query: 234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
R G FLF GP GK EL KA+A+ L+D+ + +I DM + E S+ +
Sbjct: 594 PNRPSGSFLFLGPTGVGKTELCKALADFLFDSTEA---MIRIDMSEFMEKHSVSRLIGAP 650
Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
L V++RPYS++L D++EKA++ + N+LL++L D R D
Sbjct: 651 PGYVGYEEGGYLTEAVRRRPYSLILLDEVEKAHADVFNILLQVL--DDGRLTDGQGRTVD 708
Query: 342 LTNTLIIMTSDLKDEQVYEV-------MLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
NT+I+MTS+L Q+ E+ T V V + F+P + LD +VV
Sbjct: 709 FRNTVIVMTSNLGSHQIQELSGDGSAEAYTQMKAAVMGVVQAHFRPEFINRLDDIVV 765
>sp|Q7NWN7|CLPB_CHRVO Chaperone protein ClpB OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=clpB PE=3 SV=1
Length = 859
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 117/421 (27%), Positives = 200/421 (47%), Gaps = 67/421 (15%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H + I D A+ A+ ++Q R L ++ ID++ + R D + +DK
Sbjct: 361 HGVDITDPAIVAAAELSQ--RYITDRFLPDKAIDLIDEAASRIKMELDSKPEAMDKLDRR 418
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKL------------RMQ 129
L + +E E + KE + S + L I++E+ + E ++ ++
Sbjct: 419 LIQLKIEREAVNKESDEASQKRLKL--IEDEIAELSREYADLEEIWKAEKAAQQGSQSIK 476
Query: 130 VEYDDFVSCVHDAKRVKDYSKI-------LDQIDARVH--------GKFKE----KLAVD 170
E D + + KR D+ K+ L Q++AR+ G+ K + V
Sbjct: 477 EEIDRLKVDMEELKRKGDWQKLAELQYGKLPQLEARLKEAESAGDKGEAKPNRLLRTQVG 536
Query: 171 VEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKK 230
EEIAEV S+ TGIP S T E+ ++++ L +RV GQ++A+ + +A+ + ++
Sbjct: 537 AEEIAEVVSRATGIPVSKMLTGEREKLLKMEDVLHQRVVGQDEAVSAVADAIRR---SRS 593
Query: 231 GLS-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF 289
GL+ + G FLF GP GK EL K +A+ L+D+ D HLI DM Y E S+
Sbjct: 594 GLADPNKPYGSFLFLGPTGVGKTELCKTLASFLFDSKD---HLIRIDMSEYMEKHSVARL 650
Query: 290 FDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGI 337
+ L V+++PYSV+L D++EKA+ + N+LL++L D R
Sbjct: 651 IGAPPGYVGYEEGGYLTEQVRRKPYSVILLDEVEKAHPDVFNVLLQVL--DDGRLTDGQG 708
Query: 338 AAFDLTNTLIIMTSDLKDEQV-------YEVMLTATYGRVNEVTGSLFKPSLLKLLDKLV 390
D NT+I+MTS++ +Q+ Y+V+ A V + F+P + +D++V
Sbjct: 709 RTVDFKNTVIVMTSNIGSQQIQAMATDDYQVIKLAVMAEVK----TQFRPEFINRIDEVV 764
Query: 391 V 391
V
Sbjct: 765 V 765
>sp|Q7U637|CLPB1_SYNPX Chaperone protein ClpB 1 OS=Synechococcus sp. (strain WH8102)
GN=clpB1 PE=3 SV=2
Length = 862
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 131/241 (54%), Gaps = 26/241 (10%)
Query: 169 VDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAA 228
V ++IAEV +K TGIP + E+ ++++ L +RV GQN A+ + +A+ + +A
Sbjct: 536 VTEDDIAEVIAKWTGIPVARLVQSEMEKLLQLEDDLHQRVIGQNQAVTAVADAIQRSRA- 594
Query: 229 KKGLS-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287
GLS R + FLF GP GK EL+KA+AN L+ D+D+ ++ DM Y E ++
Sbjct: 595 --GLSDPNRPIASFLFLGPTGVGKTELSKALANRLF---DSDDAMVRIDMSEYMEKHTVS 649
Query: 288 HFFDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR 335
+ L V++RPY+V+LFD++EKA+ + N++L+IL D R
Sbjct: 650 RLIGAPPGYVGYEAGGQLTEAVRRRPYAVILFDEVEKAHPDVFNVMLQIL--DDGRVTDG 707
Query: 336 GIAAFDLTNTLIIMTSDLKDEQVYEV-----MLTATYGRVNEVTGSLFKPSLLKLLDKLV 390
D TNT++I+TS++ + + E+ TA RVNE + F+P L LD +
Sbjct: 708 QGRTVDFTNTVLILTSNIGSQSILELAGDPEQHTAMEQRVNEALKAKFRPEFLNRLDDQI 767
Query: 391 V 391
+
Sbjct: 768 I 768
>sp|Q88VX7|CLPB_LACPL Chaperone protein ClpB OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=clpB PE=3 SV=1
Length = 867
Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 131/242 (54%), Gaps = 25/242 (10%)
Query: 168 AVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKA 227
+V ++IA V S++TGIP + E+ + + L +RV GQ+ A+D + +A+ + +A
Sbjct: 532 SVTPDQIANVVSRMTGIPVAKLVAGEREKLLHLADHLHERVVGQDAAVDAVSDAVLRSRA 591
Query: 228 AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287
+ R LG F+F GP GK ELAKA+A L+ D D+H++ DM Y E ES+
Sbjct: 592 GLQ--DPNRPLGSFMFLGPTGVGKTELAKALAENLF---DADDHMVRIDMSEYMEKESVS 646
Query: 288 HFFDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR 335
+ L V++ PYS+VLFD+IEKA+ + N+LL++L D R
Sbjct: 647 RLVGAAPGYVGYEEGGQLTEAVRRNPYSIVLFDEIEKAHPDVFNILLQVL--DDGRLTDG 704
Query: 336 GIAAFDLTNTLIIMTSDLKDEQVY-----EVMLTA-TYGRVNEVTGSLFKPSLLKLLDKL 389
D NT++IMTS+L E + + L+A T+ +V ++ S FKP L +D +
Sbjct: 705 QGRTVDFKNTILIMTSNLGSELLLAGVDDQGHLSADTHQQVMQLVQSRFKPEFLNRIDDI 764
Query: 390 VV 391
++
Sbjct: 765 IM 766
>sp|Q6LMY0|CLPB_PHOPR Chaperone protein ClpB OS=Photobacterium profundum GN=clpB PE=3
SV=2
Length = 857
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 137/268 (51%), Gaps = 32/268 (11%)
Query: 148 YSKILD---QIDARVHGKFKE----KLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRV 200
Y KI + Q+D + +E K V EIAEV SK TGIP + ++ +R+
Sbjct: 503 YGKIPELEKQLDLAAQAEMQEMSLLKNKVTDAEIAEVLSKQTGIPVAKMLEGERDKLLRM 562
Query: 201 QGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS-SRRQLGLFLFAGPNCSGKAELAKAIA 259
+ L +RV GQN+A++ + A+ + +A GLS R +G FLF GP GK EL K +A
Sbjct: 563 EDELHQRVIGQNEAVEAVANAIRRSRA---GLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619
Query: 260 NELYDNNDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVLF 307
N ++D+ DN ++ DM + E S+ + L V++RPYSV+L
Sbjct: 620 NFMFDSEDN---MVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRRPYSVILL 676
Query: 308 DKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATY 367
D++EKA+ + N+LL++L D R D NT+IIMTS+L +++ E Y
Sbjct: 677 DEVEKAHPDVFNILLQVL--DDGRLTDGQGRTVDFRNTVIIMTSNLGSDRIQENFGNLNY 734
Query: 368 ----GRVNEVTGSLFKPSLLKLLDKLVV 391
V EV F+P + +D+ VV
Sbjct: 735 EGIKNMVLEVVSQYFRPEFINRVDETVV 762
>sp|Q8FM94|CLPB_COREF Chaperone protein ClpB OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=clpB PE=3 SV=1
Length = 852
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 194/413 (46%), Gaps = 61/413 (14%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H ++IQD AL A+ ++ R + L ++ ID++ + R D +E+D+ +
Sbjct: 363 HGVRIQDSALVAAAELSH--RYITSRFLPDKAIDLVDEAASRLRMEIDSSPQEIDELERI 420
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVE---YDD---- 134
+RR +E L KE TD +SR L ++ +EL D E +S +K R Q E DD
Sbjct: 421 VRRLEIEEVALTKE-TDVASRE-RLERLRSELADE-REKLSELKARWQNEKAVIDDVRKF 477
Query: 135 ------FVSCVHDAKRVKDYSKILDQIDARVH------GKFKEKLA----------VDVE 172
S A+R DY ++ + R+ + +EK+ V E
Sbjct: 478 KEELEALRSESDIAEREGDYGRVAELRYGRIPELEKKIAEAEEKIGGADNSMLTEEVTPE 537
Query: 173 EIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL 232
IAEV S TGIPA E+ + ++ L KRV GQ++A+ + +A+ + +A
Sbjct: 538 VIAEVVSAWTGIPAGKMMQGETEKLLNMERFLGKRVVGQHEAVTAVSDAVRRSRAGVA-- 595
Query: 233 SSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS 292
R G FLF GP GK ELAKA++ L+ D++ ++ DM Y+E S+ +
Sbjct: 596 DPNRPTGSFLFLGPTGVGKTELAKAVSEFLF---DDERAMVRIDMSEYSEKHSVARLVGA 652
Query: 293 ------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340
L V++RPY+ VLFD++EKA+ + ++LL++L D R
Sbjct: 653 PPGYVGYDQGGQLTEAVRRRPYTTVLFDEVEKAHPDVFDILLQVL--DDGRLTDGQGRTV 710
Query: 341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID 393
D NT++I+TS+L E M+ A FKP + LD +VV D
Sbjct: 711 DFRNTILILTSNLGAGGTREQMMDAVK--------MAFKPEFINRLDDIVVFD 755
>sp|Q8DEV2|CLPB_VIBVU Chaperone protein ClpB OS=Vibrio vulnificus (strain CMCP6) GN=clpB
PE=3 SV=1
Length = 857
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 119/417 (28%), Positives = 196/417 (47%), Gaps = 62/417 (14%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H ++I D A+ A+ ++ R + +L ++ ID++ + D + LDK +
Sbjct: 361 HHVEITDPAIVAAASLSH--RYVSDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERK 418
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDA---FFEL------------------ 120
+ + +E + L E + S + LR ++ EL + F EL
Sbjct: 419 IIQLKIEQQALSNEHDEASEK--RLRSLNEELNEKEREFAELEEIWNAEKAALSGTQHIK 476
Query: 121 VSFVKLRMQVEYDDFVSCVHDAKRVKD--YSKILD---QIDARVHGKFKE----KLAVDV 171
+ + RM +E F D R+ + Y +I + Q+D + +E K V
Sbjct: 477 AALEQARMDME---FARRAGDLSRMSELQYGRIPELEKQLDLATQAEMQEMTLLKNKVTD 533
Query: 172 EEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKG 231
EIAEV SK TGIP S +E+ +R++ L KRV GQ +A++V+ A+ + +A G
Sbjct: 534 NEIAEVLSKQTGIPVSKMLEAEKEKLLRMEEVLHKRVIGQKEAVEVVANAIRRSRA---G 590
Query: 232 LS-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFF 290
LS + +G FLF GP GK EL K +AN ++D+ D ++ DM + E S+
Sbjct: 591 LSDPNKPIGSFLFLGPTGVGKTELCKTLANFMFDSEDA---MVRIDMSEFMEKHSVARLV 647
Query: 291 DS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIA 338
+ L V+++PYSV+L D++EKA+ + N+LL++L D R
Sbjct: 648 GAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGR 705
Query: 339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYG----RVNEVTGSLFKPSLLKLLDKLVV 391
D NT++IMTS+L ++ E Y +V EV F+P L +D+ VV
Sbjct: 706 TVDFRNTVVIMTSNLGSSRIQENFAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVV 762
>sp|Q7MNK1|CLPB_VIBVY Chaperone protein ClpB OS=Vibrio vulnificus (strain YJ016) GN=clpB
PE=3 SV=1
Length = 857
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 119/417 (28%), Positives = 196/417 (47%), Gaps = 62/417 (14%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H ++I D A+ A+ ++ R + +L ++ ID++ + D + LDK +
Sbjct: 361 HHVEITDPAIVAAASLSH--RYVSDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERK 418
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDA---FFEL------------------ 120
+ + +E + L E + S + LR ++ EL + F EL
Sbjct: 419 IIQLKIEQQALSNEHDEASEK--RLRSLNEELNEKEREFAELEEIWNAEKAALSGTQHIK 476
Query: 121 VSFVKLRMQVEYDDFVSCVHDAKRVKD--YSKILD---QIDARVHGKFKE----KLAVDV 171
+ + RM +E F D R+ + Y +I + Q+D + +E K V
Sbjct: 477 AALEQARMDME---FARRAGDLSRMSELQYGRIPELEKQLDLATQAEMQEMTLLKNKVTD 533
Query: 172 EEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKG 231
EIAEV SK TGIP S +E+ +R++ L KRV GQ +A++V+ A+ + +A G
Sbjct: 534 NEIAEVLSKQTGIPVSKMLEAEKEKLLRMEEVLHKRVIGQKEAVEVVANAIRRSRA---G 590
Query: 232 LS-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFF 290
LS + +G FLF GP GK EL K +AN ++D+ D ++ DM + E S+
Sbjct: 591 LSDPNKPIGSFLFLGPTGVGKTELCKTLANFMFDSEDA---MVRIDMSEFMEKHSVARLV 647
Query: 291 DS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIA 338
+ L V+++PYSV+L D++EKA+ + N+LL++L D R
Sbjct: 648 GAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGR 705
Query: 339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYG----RVNEVTGSLFKPSLLKLLDKLVV 391
D NT++IMTS+L ++ E Y +V EV F+P L +D+ VV
Sbjct: 706 TVDFRNTVVIMTSNLGSSRIQENFAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVV 762
>sp|Q7VJY3|CLPB_HELHP Chaperone protein ClpB OS=Helicobacter hepaticus (strain ATCC 51449
/ 3B1) GN=clpB PE=3 SV=1
Length = 859
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 124/433 (28%), Positives = 207/433 (47%), Gaps = 57/433 (13%)
Query: 17 SLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELD 76
+LE H + I D AL A++++ R L ++ ID++ + + EL
Sbjct: 355 NLEAHHNVNITDAALVAAAKLSS--RYITDRFLPDKAIDLIDEAAAELKMQIESEPLELS 412
Query: 77 KHKYFLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVS-----------FVK 125
K K + VE + L E T+ + +ID EL++ E +S F +
Sbjct: 413 KIKKHIANLEVEKQALNMEKTNVNEARVL--EIDKELENLREEKMSLEGKFEQEKSVFTR 470
Query: 126 L-RMQVEYDDFVSCVHDAKRVKDYSKI----------LDQIDARVHGKFKE--------K 166
+ ++ E D AKR DY+K + +A +H +++E K
Sbjct: 471 IATIKAELDSLKRESELAKRSGDYNKAAEIDYGKIPDIQAQEAALHKQWEEMQQNGTLLK 530
Query: 167 LAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPK 226
AV E IA V S+ +GIP +ER + ++ L K V GQ+DAI I A+ + K
Sbjct: 531 NAVTQESIAGVVSRWSGIPIKKMLQSQKERILGIESELAKSVVGQDDAIKAIARAIKRNK 590
Query: 227 AAKKGLS-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285
A GL+ + R +G FLF GP GK + AK +A L+DN + L+ DM Y E +
Sbjct: 591 A---GLNDASRPIGSFLFLGPTGVGKTQCAKTLAEFLFDNAKS---LVRIDMSEYMEKHA 644
Query: 286 IKHFFDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKA 333
+ + L ++++PYS+VLFD++EKA+ + N+LL++L D
Sbjct: 645 VSRLVGAPPGYVGYEEGGVLTEAIRRKPYSIVLFDEVEKAHPDVFNILLQVL-DDGRLTD 703
Query: 334 TRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGR-VNEVTGSLFKPSLLKLLDKLVVI 392
++G+ + D +NT+II+TS++ +++ E+ + V E FKP L LD +VV
Sbjct: 704 SKGV-SVDFSNTIIILTSNIASDKIMEIGDKQERQKAVKEALKMYFKPEFLNRLDDVVVF 762
Query: 393 DLAVPLLDTTRLL 405
+ + L D T+++
Sbjct: 763 N-PLGLADITQIV 774
>sp|Q6F2Y7|CLPB1_ORYSJ Chaperone protein ClpB1 OS=Oryza sativa subsp. japonica GN=CLPB1
PE=2 SV=1
Length = 912
Score = 132 bits (332), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 144/488 (29%), Positives = 237/488 (48%), Gaps = 75/488 (15%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSR---DKYQKELDKH 78
H ++IQD AL +A++++ R L ++ ID++ + C N R D +E+D
Sbjct: 364 HGVRIQDRALVVAAQLSA--RYIMGRHLPDKAIDLVDEA---CANVRVQLDSQPEEIDNL 418
Query: 79 KYFLRRAVVEYEQLVKE-DTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVS 137
+ + VE+ L KE D +R +++ ++L+D L +K R + E D +
Sbjct: 419 ERKRIQLEVEHHALEKEKDKASKARLVEVKKELDDLRDKLQPLT--MKYRKEKERIDEIR 476
Query: 138 -----------CVHDAKRVKDYSKILD-------QID---ARVHGKFKEKL----AVDVE 172
+ +A+R D +++ D +ID A++ + E L V E
Sbjct: 477 KLKQRREELQFTLQEAERRMDLARVADLKYGALQEIDVAIAKLESETGENLMLTETVGPE 536
Query: 173 EIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL 232
+IAEV S+ TGIP + +ER + + RL +RV GQ +A+ + EA+ + +A GL
Sbjct: 537 QIAEVVSRWTGIPVTRLGQNDKERLVGLADRLHQRVVGQAEAVSAVAEAVLRSRA---GL 593
Query: 233 SSRRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
+Q G FLF GP GK ELAKA+A +L+ D++N L+ DM Y E S+
Sbjct: 594 GRPQQPTGSFLFLGPTGVGKTELAKALAEQLF---DDENLLVRIDMSEYMEQHSVARLIG 650
Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
+ L V++RPYSV+LFD++EKA+ ++ N LL++L D R
Sbjct: 651 APPGYVGHEEGGQLTEQVRRRPYSVILFDEVEKAHVAVFNTLLQVL--DDGRLTDGQGRT 708
Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRV------NEVTGSLFKPSLLKLLDKLVVID 393
D NT+IIMTS+L E + M+ +V EV F+P LL LD++V+ D
Sbjct: 709 VDFRNTVIIMTSNLGAEHLLAGMVGKNSMKVARDLVMQEVR-RHFRPELLNRLDEIVIFD 767
Query: 394 LAV--PLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL-VHIASNAARKYGQNGEG 450
L RL +++ A +R V + + +AL V ++ + YG
Sbjct: 768 PLSHEQLRKVARLQMKDVAVRLAER------GVALAVTDAALDVILSLSYDPVYG--ARP 819
Query: 451 LKRWMDQR 458
++RW+++R
Sbjct: 820 IRRWIEKR 827
>sp|Q73IE4|CLPB_WOLPM Chaperone protein ClpB OS=Wolbachia pipientis wMel GN=clpB PE=3
SV=1
Length = 853
Score = 132 bits (332), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 125/235 (53%), Gaps = 19/235 (8%)
Query: 169 VDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAA 228
V ++IA + SK TGIP +E+ + ++ + +RV GQ DAI+ I A+ + ++
Sbjct: 530 VTGDDIANIVSKWTGIPVDNMMHSEKEKLLNMENEIGRRVIGQKDAIEAISNAVRRSRSG 589
Query: 229 KKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKH 288
+ + + G FLF GP GK ELAKA+A L+D+ + L+ FDM Y E S+
Sbjct: 590 VQ--DTNKPFGSFLFLGPTGVGKTELAKALAEFLFDDQ---SALLRFDMSEYMEKHSVSK 644
Query: 289 FFDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG 336
+ L V++RPY V+LFD+IEKAN I NLLL+IL D R
Sbjct: 645 LIGAPPGYVGYEQGGRLTEAVRRRPYQVILFDEIEKANPDIFNLLLQIL--DEGRLTDSH 702
Query: 337 IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
D NT++I+TS+L E + + + + V ++ S F+P L LD++++
Sbjct: 703 GKLIDFRNTILILTSNLGAEIMLKGNVDSVRNEVMQIVKSAFRPEFLNRLDEIII 757
>sp|Q6NF05|CLPB_CORDI Chaperone protein ClpB OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=clpB PE=3 SV=1
Length = 849
Score = 132 bits (332), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 194/410 (47%), Gaps = 57/410 (13%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H ++IQD AL A+ ++ R + L ++ ID++ + R D +E+D+ +
Sbjct: 363 HGVRIQDSALVAAATLSD--RYITSRFLPDKAIDLVDEAASRLRMEIDSSPQEIDELERI 420
Query: 82 LRRAVVEYEQLVKEDTDHSS--RSFWLRQIDNELKDAFFELVS--------FVKLR-MQV 130
+RR +E L KE TD +S R LRQ + ++ ELV+ K+R +
Sbjct: 421 VRRLEIEEVALSKE-TDAASKDRLIKLRQELADEREKLGELVARWNNEKGAINKVREAKE 479
Query: 131 EYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLA---------------VDVEEIA 175
E + S A+R DY K+ + R+ + ++++A V + IA
Sbjct: 480 ELERLRSESEIAERDGDYGKVAELRYGRIP-ELEKQVAEAEEHTVETTMLSEEVTPDTIA 538
Query: 176 EVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSR 235
EV S TGIPA E+ + ++ L KRV GQ++A+ + +A+ + +A
Sbjct: 539 EVVSAWTGIPAGKMLQGETEKLLNMEAELGKRVVGQSEAVVAVSDAVRRARAGVA--DPN 596
Query: 236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS--- 292
R G FLF GP GK ELAKA+A ++ D+D ++ DM Y E ++ +
Sbjct: 597 RPTGSFLFLGPTGVGKTELAKALAEFMF---DDDRAMVRIDMSEYGEKHAVARLVGAPPG 653
Query: 293 ---------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT 343
L V++RPY+VVLFD++EKA+ + ++LL++L D R D
Sbjct: 654 YVGYDQGGQLTEAVRRRPYTVVLFDEVEKAHPDVFDILLQVL--DEGRLTDGQGRTVDFR 711
Query: 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID 393
NT++I+TS+L + M+ A FKP + LD +V+ D
Sbjct: 712 NTVLILTSNLGAGGTKDEMMDAVK--------RAFKPEFVNRLDDVVIFD 753
>sp|Q826F2|CLPB2_STRAW Chaperone protein ClpB 2 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=clpB2 PE=3 SV=1
Length = 879
Score = 132 bits (331), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 119/423 (28%), Positives = 199/423 (47%), Gaps = 61/423 (14%)
Query: 18 LEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDK 77
LE H ++IQD AL A+ ++ R L ++ ID++ + R D ELD+
Sbjct: 362 LEVFHGVKIQDTALVSAATLSH--RYITDRFLPDKAIDLVDEACARLRTEIDSMPAELDE 419
Query: 78 HKYFLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKD---------AFFELVSFVKLRM 128
+ R +E L KE +D +S++ L ++ EL D A +E R+
Sbjct: 420 ITRRVTRLEIEEAALSKE-SDPASKT-RLEELRRELADLRGEADAKHAQWEAERQAIRRV 477
Query: 129 QVEYDDFVSCVHDAK-----------------RVKDYSKILDQIDARVHGKFKE----KL 167
Q + H+A+ R++D + L + ++ K E +
Sbjct: 478 QELRQELEQVRHEAEEAERAYDLNRAAELRYGRLQDLERRLAAEEEQLAAKQGENRLLRE 537
Query: 168 AVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKA 227
V EEIAE+ + TGIP + E+ +R+ L++RV GQ++A+ ++ +A+ + ++
Sbjct: 538 VVTEEEIAEIVAAWTGIPVARLQEGEREKLLRLDEILRERVIGQDEAVKLVTDAIIRARS 597
Query: 228 AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287
+ RR +G F+F GP GK ELAK +A L+D+ +N ++ DM Y E ++
Sbjct: 598 GIR--DPRRPIGSFIFLGPTGVGKTELAKTLARTLFDSEEN---MVRLDMSEYQERHTVS 652
Query: 288 HFFDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR 335
+ L V+++PYSVVLFD+IEKA++ + N LL+IL D R
Sbjct: 653 RLMGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEIEKAHTDVFNTLLQIL--DDGRITDA 710
Query: 336 GIAAFDLTNTLIIMTSDLKDEQVY-------EVMLTATYGRVNEVTGSLFKPSLLKLLDK 388
D NT+IIMTS++ E + E+ A + E+ G F+P L +D
Sbjct: 711 QGRTVDFRNTVIIMTSNIGSEHLLDGATAEGEIKPDARALVMGELRGH-FRPEFLNRVDD 769
Query: 389 LVV 391
+V+
Sbjct: 770 IVL 772
>sp|Q9HVN5|CLPB_PSEAE Chaperone protein ClpB OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=clpB PE=3 SV=1
Length = 854
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 114/414 (27%), Positives = 196/414 (47%), Gaps = 54/414 (13%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H + I D A+ A++++ R +L ++ ID++ + R D +ELD+
Sbjct: 361 HGVSITDGAIIAAAKLSH--RYITDRQLPDKAIDLIDEAASRIRMEIDSKPEELDRLDRR 418
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFW-----LRQIDNELKD-------AFFELVSFVKLRMQ 129
L + +E E L KED + + + + +++ E D E+ +++ +
Sbjct: 419 LIQLKIEREALKKEDDEATRKRLAKLEEDIVKLEREYADLEEIWKSEKAEVQGSAQIQQK 478
Query: 130 VEY-----------DDFVSCVH-DAKRVKDYSKILDQIDARVHGKFKEKL---AVDVEEI 174
+E D S + + D + L +D HGK + +L V EEI
Sbjct: 479 IEQAKQEMEAARRKGDLESMARIQYQTIPDLERSLQMVDQ--HGKTENQLLRNKVTDEEI 536
Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS- 233
AEV SK TGIP S E+ +R++ L +RV GQ++A+ + A+ + +A GL+
Sbjct: 537 AEVVSKWTGIPVSKMLEGEREKLLRMEQELHRRVIGQDEAVVAVSNAVRRSRA---GLAD 593
Query: 234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
R G FLF GP GK EL KA+A L+ D + L+ DM + E S+ +
Sbjct: 594 PNRPSGSFLFLGPTGVGKTELCKALAEFLF---DTEEALVRIDMSEFMEKHSVARLIGAP 650
Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
L ++++PYSVVL D++EKA+ + N+LL++L+ D + G D
Sbjct: 651 PGYVGFEEGGYLTEAIRRKPYSVVLLDEVEKAHPDVFNILLQVLE-DGRLTDSHG-RTVD 708
Query: 342 LTNTLIIMTSDLKDEQVYEVM--LTATYGRVNEVTGSLFKPSLLKLLDKLVVID 393
NT+++MTS+L Q+ E+ A V + + F+P + +D++VV +
Sbjct: 709 FRNTVVVMTSNLGSAQIQELAGDREAQRAAVMDAVNAHFRPEFINRIDEVVVFE 762
>sp|Q7VNH1|CLPB_HAEDU Chaperone protein ClpB OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=clpB PE=3 SV=1
Length = 856
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 112/418 (26%), Positives = 198/418 (47%), Gaps = 63/418 (15%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H +QI D A+ A+ ++ R + +L ++ ID++ + D + LDK
Sbjct: 359 HHVQITDPAIVAAATLSH--RYISDRQLPDKAIDLIDEAASSLRMEIDSKPEPLDK---- 412
Query: 82 LRRAVVEYE---QLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKL------------ 126
L R +++ + Q ++++ D +SR L ++D E+ E + ++
Sbjct: 413 LERRIIQLKLERQALQKEKDEASRQ-RLAKLDEEMTAKAQEYSALEEVWKAEKSALLGTQ 471
Query: 127 RMQVEYDDFVSCVHDAKRVKDYSKI-------LDQIDARVHGKFKE----------KLAV 169
++ E ++ + AKR ++ K+ + ++ ++ K + V
Sbjct: 472 HLKTELENARIAMDQAKRADNFEKMSELQYGTIPALEKQLQDAIKREEENNDHHLLRTKV 531
Query: 170 DVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAK 229
EEIAEV SK TGIP + +E+ +R++ L RV GQN+A++ + A+ + +A
Sbjct: 532 TEEEIAEVLSKATGIPITKMMEGEKEKLLRMEQVLHSRVIGQNEAVEAVANAILRSRA-- 589
Query: 230 KGLS-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKH 288
GL+ + +G FLF GP GK EL+K +AN L+ D++N ++ DM + E S+
Sbjct: 590 -GLADPNKPIGSFLFLGPTGVGKTELSKTLANFLF---DDENAIVRIDMSEFMEKHSVSR 645
Query: 289 FFDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG 336
+ L V++RPYSVVL D++EKA+ + N+LL++L D R
Sbjct: 646 LVGAPPGYVGYEQGGYLTEAVRRRPYSVVLLDEVEKAHPDVFNILLQVL--DDGRLTDGQ 703
Query: 337 IAAFDLTNTLIIMTSDLKDEQVY---EVMLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
D NT++IMTS+L + E+ A V V F+P + +D+ VV
Sbjct: 704 GRTVDFRNTVVIMTSNLGAHLIQENAEITYLAMKEMVMSVVSQHFRPEFINRIDETVV 761
>sp|Q8CPT5|CLPB_STAES Chaperone protein ClpB OS=Staphylococcus epidermidis (strain ATCC
12228) GN=clpB PE=3 SV=1
Length = 869
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 25/238 (10%)
Query: 172 EEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKG 231
EEI ++ S+ TGIP S E+ + + L KRV GQ+ A+D++ +A+ + +A K
Sbjct: 538 EEIGDIVSQWTGIPVSKLVETEREKLLSLSDILHKRVVGQDKAVDLVSDAVVRARAGIK- 596
Query: 232 LSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
R +G FLF GP GK ELAK++A+ L+ D++ H+I DM Y E ++
Sbjct: 597 -DPNRPIGSFLFLGPTGVGKTELAKSLASSLF---DSEKHMIRIDMSEYMEKHAVSRLIG 652
Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
+ L V++ PYSV+L D++EKA+S + N+LL+IL D R +
Sbjct: 653 APPGYVGHDEGGQLTEAVRRNPYSVILLDEVEKAHSDVFNVLLQIL--DEGRLTDSKGRS 710
Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTA------TYGRVNEVTGSLFKPSLLKLLDKLVV 391
D NT+IIMTS++ + + E + A T V + + FKP +L +D +V+
Sbjct: 711 VDFKNTIIIMTSNIGSQVLLENVKDAGEISDDTEKAVMDSLHAYFKPEILNRMDDIVL 768
>sp|Q5HQI5|CLPB_STAEQ Chaperone protein ClpB OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=clpB PE=3 SV=1
Length = 869
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 25/238 (10%)
Query: 172 EEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKG 231
EEI ++ S+ TGIP S E+ + + L KRV GQ+ A+D++ +A+ + +A K
Sbjct: 538 EEIGDIVSQWTGIPVSKLVETEREKLLSLSDILHKRVVGQDKAVDLVSDAVVRARAGIK- 596
Query: 232 LSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
R +G FLF GP GK ELAK++A+ L+ D++ H+I DM Y E ++
Sbjct: 597 -DPNRPIGSFLFLGPTGVGKTELAKSLASSLF---DSEKHMIRIDMSEYMEKHAVSRLIG 652
Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
+ L V++ PYSV+L D++EKA+S + N+LL+IL D R +
Sbjct: 653 APPGYVGHDEGGQLTEAVRRNPYSVILLDEVEKAHSDVFNVLLQIL--DEGRLTDSKGRS 710
Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTA------TYGRVNEVTGSLFKPSLLKLLDKLVV 391
D NT+IIMTS++ + + E + A T V + + FKP +L +D +V+
Sbjct: 711 VDFKNTIIIMTSNIGSQVLLENVKDAGEISDDTEKAVMDSLHAYFKPEILNRMDDIVL 768
>sp|Q82SD8|CLPB_NITEU Chaperone protein ClpB OS=Nitrosomonas europaea (strain ATCC 19718
/ NBRC 14298) GN=clpB PE=3 SV=1
Length = 863
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 130/243 (53%), Gaps = 32/243 (13%)
Query: 169 VDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAA 228
V EEIAEV S+ TGIP S E+ + ++ +L +RV GQ++A+ ++ +A+ + +
Sbjct: 536 VGAEEIAEVVSRATGIPVSKMMQGEREKLLFMEDKLHERVIGQDEAVRLVSDAIRR---S 592
Query: 229 KKGLS-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287
+ GL+ R G FLF GP GK EL KA+A L+ D++ HLI DM + E S+
Sbjct: 593 RSGLADPNRPYGSFLFLGPTGVGKTELCKALAGFLF---DSEEHLIRVDMSEFMEKHSVA 649
Query: 288 HFFDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR 335
+ L V+++PYSV+L D++EKA+ + N+LL++L D R
Sbjct: 650 RLIGAPPGYVGYEEGGYLTEQVRRKPYSVILLDEVEKAHPDVFNVLLQVL--DDGRMTDG 707
Query: 336 GIAAFDLTNTLIIMTSDLKDEQV-------YEVMLTATYGRVNEVTGSLFKPSLLKLLDK 388
D NT+I+MTS+L + + Y+V+ A G V + F+P + +D+
Sbjct: 708 QGRTVDFKNTVIVMTSNLGSQMIQQMSGDDYQVIKLAVMGEVK----TYFRPEFINRIDE 763
Query: 389 LVV 391
+VV
Sbjct: 764 VVV 766
>sp|Q88Q71|CLPB_PSEPK Chaperone protein ClpB OS=Pseudomonas putida (strain KT2440)
GN=clpB PE=3 SV=1
Length = 854
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 140/267 (52%), Gaps = 28/267 (10%)
Query: 145 VKDYSKILDQIDARVHGKFKEKL---AVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQ 201
+ D + L +D HGK +L V EEIAEV SK TGIP + E+ ++++
Sbjct: 506 IPDLERSLQMVDQ--HGKTDNQLLRNKVTEEEIAEVVSKWTGIPVAKMLEGEREKLLKME 563
Query: 202 GRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS-SRRQLGLFLFAGPNCSGKAELAKAIAN 260
L +RV GQ++A+ + A+ + +A GLS R G FLF GP GK EL KA+A
Sbjct: 564 ELLHQRVIGQSEAVTAVANAVRRSRA---GLSDPNRPSGSFLFLGPTGVGKTELCKALAE 620
Query: 261 ELYDNNDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVLFD 308
L+ D + ++ DM + E S+ + L V+++PYSVVL D
Sbjct: 621 FLF---DTEEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVVLLD 677
Query: 309 KIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM--LTAT 366
++EKA+ + N+LL++L+ D + G D NT+I+MTS+L Q+ E++ A
Sbjct: 678 EVEKAHPDVFNVLLQVLE-DGRLTDSHG-RTVDFRNTVIVMTSNLGSAQIQELVGDREAQ 735
Query: 367 YGRVNEVTGSLFKPSLLKLLDKLVVID 393
V + G+ F+P + +D++VV +
Sbjct: 736 RAAVMDAVGAHFRPEFINRIDEVVVFE 762
>sp|Q72AW6|CLPB_DESVH Chaperone protein ClpB OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3
SV=1
Length = 865
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 117/422 (27%), Positives = 196/422 (46%), Gaps = 58/422 (13%)
Query: 22 HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
H ++I D A+ A ++ R +L ++ ID++ + D +LD+
Sbjct: 366 HGVRISDSAIVEAVTLSH--RYITDRQLPDKAIDLIDEAAALIRTEIDSLPADLDEANRK 423
Query: 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKL--RMQVEYDDFVSCV 139
+ + +E E L +E TD +SR L +++NEL D E + + R + D S
Sbjct: 424 IMQLEIEREALRRE-TDVASRE-RLERLENELADLRAEQTALLSQWEREKGSIDHVRSIK 481
Query: 140 HDAKRVK------------------DYSKILD---QIDARVHGKFKE----KLAVDVEEI 174
D +R + YS++L+ Q+++ G E K V ++I
Sbjct: 482 EDIERTRHAIEEAERAYDLNRAAELKYSRLLELERQLESAEKGGHDETRLLKEEVRPDDI 541
Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS- 233
AE+ ++ TGIP + E+ +R+ L +RV GQ +A+D + EA+ + A+ GLS
Sbjct: 542 AEIVARWTGIPVTRLLESEREKLLRLADVLHERVVGQEEAVDAVSEAVLR---ARAGLSD 598
Query: 234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
R +G F+F GP GK EL K +A L+D +N ++ DM Y E ++ +
Sbjct: 599 PSRPIGSFIFLGPTGVGKTELCKTLAEALFDTEEN---IVRLDMSEYMEKHAVARLIGAP 655
Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
L V+++PYSVVLFD++EKA+ + N LL+IL D R D
Sbjct: 656 PGYVGYDEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNTLLQIL--DDGRLTDSHGRTVD 713
Query: 342 LTNTLIIMTSDLKDEQVYEVM------LTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLA 395
NT+IIMTS++ + + + L+ +V E F+P L +D+ V+
Sbjct: 714 FRNTIIIMTSNIGSPYMLDGISEGGEFLSGVREKVMEELRRHFRPEFLNRVDETVLFKPL 773
Query: 396 VP 397
+P
Sbjct: 774 LP 775
>sp|Q9KU18|CLPB_VIBCH Chaperone protein ClpB OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=clpB PE=3 SV=1
Length = 857
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 124/236 (52%), Gaps = 25/236 (10%)
Query: 173 EIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL 232
EIAEV SK TGIP S +E+ +R++ L KRV GQ +A++V+ A+ + +A GL
Sbjct: 535 EIAEVLSKQTGIPVSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRA---GL 591
Query: 233 S-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
S R +G FLF GP GK EL K +AN L+D+ D ++ DM + E S+
Sbjct: 592 SDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDA---MVRVDMSEFMEKHSVARLVG 648
Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
+ L V+++PYSV+L D++EKA+ + N+LL++L D R
Sbjct: 649 APPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRT 706
Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKPSLLKLLDKLVV 391
D NT++IMTS+L ++ E Y + E V F+P L +D+ VV
Sbjct: 707 VDFRNTVVIMTSNLGSSRIQENFARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVV 762
>sp|P44403|CLPB_HAEIN Chaperone protein ClpB OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=clpB PE=3 SV=1
Length = 856
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 136/271 (50%), Gaps = 37/271 (13%)
Query: 144 RVKDYSKILDQIDARVHGKFKEKLAVDV--EEIAEVASKLTGIPASWFCTKPEERYMRVQ 201
R+ D K L+Q + GK L V EEIAEV SK TGIP S +E+ +R++
Sbjct: 505 RIPDLEKQLEQAETS-EGKEMTLLRYRVTDEEIAEVLSKATGIPVSKMMEGEKEKLLRME 563
Query: 202 GRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS-SRRQLGLFLFAGPNCSGKAELAKAIAN 260
L KRV GQ +A+D + A+ + +A GLS R +G FLF GP GK EL K +A
Sbjct: 564 DELHKRVIGQEEAVDAVANAIRRSRA---GLSDPNRPIGSFLFLGPTGVGKTELCKTLAK 620
Query: 261 ELYDNNDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVLFD 308
L+D+ D ++ DM + E S+ + L V++RPYSV+L D
Sbjct: 621 FLFDSED---AMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLD 677
Query: 309 KIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDL--------KDEQVYE 360
++EKA++ + N+LL++L D R D NT++IMTS+L KDE E
Sbjct: 678 EVEKAHADVFNILLQVL--DDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQGNKDESYSE 735
Query: 361 VMLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
+ V V F+P + +D+ VV
Sbjct: 736 M-----KALVMSVVSQHFRPEFINRIDETVV 761
>sp|Q8NXE7|CLPB_STAAW Chaperone protein ClpB OS=Staphylococcus aureus (strain MW2)
GN=clpB PE=3 SV=1
Length = 869
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 126/240 (52%), Gaps = 29/240 (12%)
Query: 172 EEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKG 231
EEI ++ S+ TGIP S E+ + + L KRV GQ+ A+D++ +A+ + +A K
Sbjct: 538 EEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIK- 596
Query: 232 LSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
R +G FLF GP GK ELAK++A L+ D++ H+I DM Y E ++
Sbjct: 597 -DPNRPIGSFLFLGPTGVGKTELAKSLAASLF---DSEKHMIRIDMSEYMEKHAVSRLIG 652
Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
+ L V++ PYSV+L D++EKA++ + N+LL+IL D R +
Sbjct: 653 APPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQIL--DEGRLTDSKGRS 710
Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVT--------GSLFKPSLLKLLDKLVV 391
D NT+IIMTS++ + + E + G + E T + FKP +L +D +V+
Sbjct: 711 VDFKNTIIIMTSNIGSQVLLENV--KETGEITESTEKAVMTSLNAYFKPEILNRMDDIVL 768
>sp|Q74FF1|CLPB_GEOSL Chaperone protein ClpB OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=clpB PE=3 SV=1
Length = 865
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 155/300 (51%), Gaps = 32/300 (10%)
Query: 143 KRVKDYSKILDQIDARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQG 202
K + D S L+ D R GK + VD E +AE+ S+ TGIP S ++ + ++
Sbjct: 514 KEIADRSAELE--DIRKEGKMLPE-EVDGELVAEIVSRWTGIPVSRMMEGEADKLVHMED 570
Query: 203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLS-SRRQLGLFLFAGPNCSGKAELAKAIANE 261
RL RV GQ++A+ ++ A+ + A+ GLS R +G FLF GP GK E AKA+A
Sbjct: 571 RLITRVVGQDEALVLVANAIRR---ARSGLSDPNRPIGSFLFLGPTGVGKTETAKALAEF 627
Query: 262 LYDNNDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVLFDK 309
L+++ D ++ DM Y E ++ + L V++RPYS+VLFD+
Sbjct: 628 LFND---DQAIVRIDMSEYQEKHTVARLIGAPPGYVGYEEGGQLTEAVRRRPYSIVLFDE 684
Query: 310 IEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGR 369
IEKA+ + N+LL++L D R D NT+IIMTS+L + + + ++ Y R
Sbjct: 685 IEKAHPEVFNVLLQVL--DDGRLTDGQGRTVDFRNTVIIMTSNLGSQWIQQYG-SSDYAR 741
Query: 370 ----VNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI 425
V E FKP L +D++V+ A+PL +++ + C K+R D + V+
Sbjct: 742 MKAMVTETLKEGFKPEFLNRIDEIVIYH-ALPLEQIKKIVDIQVEC--LKQRLADRRIVL 798
>sp|Q831Y7|CLPB_ENTFA Chaperone protein ClpB OS=Enterococcus faecalis (strain ATCC 700802
/ V583) GN=clpB PE=3 SV=1
Length = 868
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 151/308 (49%), Gaps = 34/308 (11%)
Query: 168 AVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKA 227
+V EIA+V +LTGIP + E+ M++ L KRV GQ++A+D + +A+ + +A
Sbjct: 533 SVTENEIAQVVGRLTGIPVTKLVEGEREKLMKLNETLHKRVIGQDEAVDAVSDAVIRSRA 592
Query: 228 AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287
+ R LG FLF GP GK ELAKA+A +L+D+ D H++ DM Y E ++
Sbjct: 593 GLQ--DPNRPLGSFLFLGPTGVGKTELAKALAEDLFDSED---HMVRIDMSEYMEKHAVS 647
Query: 288 HFFDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR 335
+ L V++ PY++VL D+IEKA+ + N+LL++L D R
Sbjct: 648 RLVGAPPGYVGYEEGGQLTEAVRRNPYTIVLLDEIEKAHPDVFNILLQVL--DDGRLTDS 705
Query: 336 GIAAFDLTNTLIIMTSDLKDEQVYE------VMLTATYGRVNEVTGSLFKPSLLKLLDKL 389
D NT++IMTS++ + + E + +V + FKP L +D
Sbjct: 706 KGRVVDFKNTVLIMTSNIGSQLLLEGVTPEGTIPEEVENQVMNILKGHFKPEFLNRIDDT 765
Query: 390 VVIDLAVPL-LDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARK-YGQN 447
+ L PL LD + ++ + + R + + +++ + A IA N YG
Sbjct: 766 I---LFTPLSLDNVKGIIGKMTAQLAHRL--EQQEIVLEITDEAKTWIAENGYEPAYG-- 818
Query: 448 GEGLKRWM 455
LKR++
Sbjct: 819 ARPLKRFI 826
>sp|Q6GAV1|CLPB_STAAS Chaperone protein ClpB OS=Staphylococcus aureus (strain MSSA476)
GN=clpB PE=3 SV=1
Length = 869
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 126/240 (52%), Gaps = 29/240 (12%)
Query: 172 EEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKG 231
EEI ++ S+ TGIP S E+ + + L KRV GQ+ A+D++ +A+ + +A K
Sbjct: 538 EEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIK- 596
Query: 232 LSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
R +G FLF GP GK ELAK++A L+ D++ H+I DM Y E ++
Sbjct: 597 -DPNRPIGSFLFLGPTGVGKTELAKSLAASLF---DSEKHMIRIDMSEYMEKHAVSRLIG 652
Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
+ L V++ PYSV+L D++EKA++ + N+LL+IL D R +
Sbjct: 653 APPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQIL--DEGRLTDSKGRS 710
Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVT--------GSLFKPSLLKLLDKLVV 391
D NT+IIMTS++ + + E + G + E T + FKP +L +D +V+
Sbjct: 711 VDFKNTIIIMTSNIGSQVLLENV--KETGEITESTEKAVMTSLNAYFKPEILNRMDDIVL 768
>sp|Q5HHB0|CLPB_STAAC Chaperone protein ClpB OS=Staphylococcus aureus (strain COL)
GN=clpB PE=3 SV=1
Length = 869
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 126/240 (52%), Gaps = 29/240 (12%)
Query: 172 EEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKG 231
EEI ++ S+ TGIP S E+ + + L KRV GQ+ A+D++ +A+ + +A K
Sbjct: 538 EEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIK- 596
Query: 232 LSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
R +G FLF GP GK ELAK++A L+ D++ H+I DM Y E ++
Sbjct: 597 -DPNRPIGSFLFLGPTGVGKTELAKSLAASLF---DSEKHMIRIDMSEYMEKHAVSRLIG 652
Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
+ L V++ PYSV+L D++EKA++ + N+LL+IL D R +
Sbjct: 653 APPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQIL--DEGRLTDSKGRS 710
Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVT--------GSLFKPSLLKLLDKLVV 391
D NT+IIMTS++ + + E + G + E T + FKP +L +D +V+
Sbjct: 711 VDFKNTIIIMTSNIGSQVLLENV--KETGEITESTEKAVMTSLNAYFKPEILNRMDDIVL 768
>sp|Q7A6G6|CLPB_STAAN Chaperone protein ClpB OS=Staphylococcus aureus (strain N315)
GN=clpB PE=1 SV=1
Length = 869
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 126/240 (52%), Gaps = 29/240 (12%)
Query: 172 EEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKG 231
EEI ++ S+ TGIP S E+ + + L KRV GQ+ A+D++ +A+ + +A K
Sbjct: 538 EEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIK- 596
Query: 232 LSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
R +G FLF GP GK ELAK++A L+ D++ H+I DM Y E ++
Sbjct: 597 -DPNRPIGSFLFLGPTGVGKTELAKSLAASLF---DSEKHMIRIDMSEYMEKHAVSRLIG 652
Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
+ L V++ PYSV+L D++EKA++ + N+LL+IL D R +
Sbjct: 653 APPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQIL--DEGRLTDSKGRS 710
Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVT--------GSLFKPSLLKLLDKLVV 391
D NT+IIMTS++ + + E + G + E T + FKP +L +D +V+
Sbjct: 711 VDFKNTIIIMTSNIGSQVLLENV--KETGEITESTEKAVMTNLNAYFKPEILNRMDDIVL 768
>sp|Q99VB5|CLPB_STAAM Chaperone protein ClpB OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=clpB PE=1 SV=1
Length = 869
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 126/240 (52%), Gaps = 29/240 (12%)
Query: 172 EEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKG 231
EEI ++ S+ TGIP S E+ + + L KRV GQ+ A+D++ +A+ + +A K
Sbjct: 538 EEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIK- 596
Query: 232 LSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
R +G FLF GP GK ELAK++A L+ D++ H+I DM Y E ++
Sbjct: 597 -DPNRPIGSFLFLGPTGVGKTELAKSLAASLF---DSEKHMIRIDMSEYMEKHAVSRLIG 652
Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
+ L V++ PYSV+L D++EKA++ + N+LL+IL D R +
Sbjct: 653 APPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQIL--DEGRLTDSKGRS 710
Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVT--------GSLFKPSLLKLLDKLVV 391
D NT+IIMTS++ + + E + G + E T + FKP +L +D +V+
Sbjct: 711 VDFKNTIIIMTSNIGSQVLLENV--KETGEITESTEKAVMTNLNAYFKPEILNRMDDIVL 768
>sp|Q6GIB2|CLPB_STAAR Chaperone protein ClpB OS=Staphylococcus aureus (strain MRSA252)
GN=clpB PE=3 SV=1
Length = 869
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 126/240 (52%), Gaps = 29/240 (12%)
Query: 172 EEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKG 231
EEI ++ S+ TGIP S E+ + + L KRV GQ+ A+D++ +A+ + +A K
Sbjct: 538 EEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIK- 596
Query: 232 LSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
R +G FLF GP GK ELAK++A L+ D++ H+I DM Y E ++
Sbjct: 597 -DPNRPIGSFLFLGPTGVGKTELAKSLAASLF---DSEKHMIRIDMSEYMEKHAVSRLIG 652
Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
+ L V++ PYSV+L D++EKA++ + N+LL+IL D R +
Sbjct: 653 APPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQIL--DEGRLTDSKGRS 710
Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVT--------GSLFKPSLLKLLDKLVV 391
D NT+IIMTS++ + + E + G + E T + FKP +L +D +V+
Sbjct: 711 VDFKNTIIIMTSNIGSQVLLENV--KETGEITESTEKAVMTSLNAYFKPEILNRMDDIVL 768
>sp|Q889C2|CLPB_PSESM Chaperone protein ClpB OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=clpB PE=3 SV=1
Length = 854
Score = 129 bits (323), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 139/267 (52%), Gaps = 28/267 (10%)
Query: 145 VKDYSKILDQIDARVHGKFKEKL---AVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQ 201
+ D + L +D HGK + +L V EEIAEV SK TGIP S E+ +R++
Sbjct: 506 IPDLERSLQMVDQ--HGKPENQLLRSKVTEEEIAEVVSKWTGIPVSKMLEGEREKLLRME 563
Query: 202 GRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS-SRRQLGLFLFAGPNCSGKAELAKAIAN 260
L RV GQ +A+ + A+ + +A GLS R G F+F GP GK EL KA+A
Sbjct: 564 TLLHNRVIGQEEAVVAVSNAVRRSRA---GLSDPNRPSGSFMFLGPTGVGKTELCKALAE 620
Query: 261 ELYDNNDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVLFD 308
L+ D + ++ DM + E S+ + L V+++PYSV+L D
Sbjct: 621 FLF---DTEEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLD 677
Query: 309 KIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM--LTAT 366
++EKA+S + N+LL++L+ D + G D NT+I+MTS+L Q+ E++ A
Sbjct: 678 EVEKAHSDVFNILLQVLE-DGRLTDSHG-RTVDFRNTVIVMTSNLGSAQIQELVGDREAQ 735
Query: 367 YGRVNEVTGSLFKPSLLKLLDKLVVID 393
V + + F+P + +D++V+ +
Sbjct: 736 RAAVMDAVSTHFRPEFVNRIDEVVIFE 762
>sp|Q87S63|CLPB_VIBPA Chaperone protein ClpB OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=clpB PE=3 SV=1
Length = 857
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 125/236 (52%), Gaps = 25/236 (10%)
Query: 173 EIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL 232
EIAEV SK TGIP S +E+ +R++ L RV GQ++A+ V+ A+ + +A GL
Sbjct: 535 EIAEVLSKQTGIPVSKMLEAEKEKLLRMEDVLHNRVVGQSEAVAVVSNAIRRSRA---GL 591
Query: 233 S-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
S R +G FLF GP GK EL K +A+ ++D+ D ++ DM + E S+
Sbjct: 592 SDPNRPIGSFLFLGPTGVGKTELCKTLASFMFDSEDA---MVRIDMSEFMEKHSVARLVG 648
Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
+ L V+++PYSV+L D++EKA+ + N+LL++L D R
Sbjct: 649 APPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRT 706
Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTATY----GRVNEVTGSLFKPSLLKLLDKLVV 391
D NT++IMTS+L ++ E T Y V +V F+P L +D++VV
Sbjct: 707 VDFRNTVVIMTSNLGSSRIQENFATLDYQGIKSEVMDVVSKHFRPEFLNRVDEIVV 762
>sp|Q8XZR0|CLPB_RALSO Chaperone protein ClpB OS=Ralstonia solanacearum (strain GMI1000)
GN=clpB PE=3 SV=1
Length = 862
Score = 129 bits (323), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 130/239 (54%), Gaps = 24/239 (10%)
Query: 169 VDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAA 228
V EEIAEV S+ TGIP S ++ +R++ RL +RV GQ++A+ ++ +A+ + +A
Sbjct: 534 VGAEEIAEVVSRATGIPVSKMMQGERDKLLRMEDRLHERVVGQDEAVRLVSDAIRRSRA- 592
Query: 229 KKGLSSR-RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287
G++ + G FLF GP GK EL KA+A L+ D++ HLI DM + E S+
Sbjct: 593 --GIADENKPYGSFLFLGPTGVGKTELCKALAGFLF---DSEEHLIRIDMSEFMEKHSVS 647
Query: 288 HFFDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR 335
+ L V+++PYSVVL D++EKA+ + N+LL++L D R
Sbjct: 648 RLIGAPPGYVGYEEGGYLTEAVRRKPYSVVLLDEVEKAHPDVFNILLQVL--DDGRLTDG 705
Query: 336 GIAAFDLTNTLIIMTSDLKDEQVYEVMLTAT---YGRVNEVTGSLFKPSLLKLLDKLVV 391
D NT+I+MTS+L + + ++ + G V + + F+P L +D++VV
Sbjct: 706 QGRTVDFKNTVIVMTSNLGSQLIQQMASESPDVIKGAVWQEVKTHFRPEFLNRIDEVVV 764
>sp|P17422|CLPB_DICNO Chaperone protein ClpB OS=Dichelobacter nodosus GN=clpB PE=3 SV=2
Length = 860
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 135/258 (52%), Gaps = 34/258 (13%)
Query: 154 QIDARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQND 213
Q + R H + K V EEIAE+ S+ TGIP + +ER + ++ L +RV GQ
Sbjct: 523 QTEQRPHRLMRNK--VTAEEIAEIVSRWTGIPVAKMMEGEKERLLHLETVLNERVVGQKT 580
Query: 214 AIDVIFEALTKPKAAKKGLS-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHL 272
A++ + A+ + +A GLS +R +G FLF GP GK EL + +A L+D+ +N +
Sbjct: 581 AVEAVANAIRRNRA---GLSDPKRPIGSFLFLGPTGVGKTELCRTLAQFLFDSEEN---M 634
Query: 273 IHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVLFDKIEKANSSILNL 320
+ DM + E S+ + L V+++PYSVVLFD++EKA+S + N
Sbjct: 635 VRIDMSEFMEKHSVARLIGAPPGYVGYDQGGYLTEAVRRKPYSVVLFDEVEKAHSDVFNT 694
Query: 321 LLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKD-------EQVYEVMLTATYGRVNEV 373
LL++L D R D +T+IIMTS+L E+ YE M +A V E+
Sbjct: 695 LLQVL--DEGRLTDGQGRTVDFRHTVIIMTSNLGSDMIQLLAEKSYEEMKSA----VMEI 748
Query: 374 TGSLFKPSLLKLLDKLVV 391
+ F+P + +D+ +V
Sbjct: 749 VMAHFRPEFINRIDEAIV 766
>sp|Q7VYV6|CLPB_BORPE Chaperone protein ClpB OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=clpB PE=3 SV=1
Length = 865
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 129/240 (53%), Gaps = 26/240 (10%)
Query: 169 VDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAA 228
V EEIAEV S+ TGIP + ++ +R++ L KRV GQ++A+ ++ +A+ + +A
Sbjct: 537 VGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRA- 595
Query: 229 KKGLS-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287
GL+ R G FLF GP GK EL +A+A+ L+ D++ H+I DM + E S+
Sbjct: 596 --GLADPSRPYGSFLFLGPTGVGKTELTRALADFLF---DSEEHMIRIDMSEFMEKHSVA 650
Query: 288 HFFDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR 335
+ L V+++PYSV+L D++EKA+ + N+LL++L D R
Sbjct: 651 RLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVL--DDGRLTDG 708
Query: 336 GIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVT----GSLFKPSLLKLLDKLVV 391
D NT+I+MTS+L + + + M Y + EV F+P L +D++VV
Sbjct: 709 QGRTVDFRNTVIVMTSNLGSQHI-QSMAGKPYEVIKEVVWDELKHTFRPEFLNRIDEVVV 767
>sp|Q7WSY8|CLPB_PROFC Chaperone protein ClpB OS=Propionibacterium freudenreichii subsp.
shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1)
GN=clpB PE=2 SV=2
Length = 866
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 119/421 (28%), Positives = 194/421 (46%), Gaps = 60/421 (14%)
Query: 19 EKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKH 78
E H+++I D AL A++++ R +L ++ ID++ + R D +E+D
Sbjct: 359 EAHHKVRITDSALVAAAQLSH--RYITGRQLPDKAIDLVDEAASRLRMEIDSSPEEIDT- 415
Query: 79 KYFLRRAV--VEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFEL---------------- 120
LRR V + EQ E + L +I+++L DA +L
Sbjct: 416 ---LRRQVDRLTMEQFAVEKEEDPGSKARLARINSDLADAKEQLRGLEARWAAEKEGLNK 472
Query: 121 VSFVKLR---MQVEYDDFVSCVHDAK-------RVKDYSKILDQIDAR---VHGKFKEKL 167
V +K R ++ E D AK + + +K LD+ A GK
Sbjct: 473 VGELKTRIDALRTEADKHTRDGDLAKASEILYGEIPELNKQLDEASAAEEDSQGKSMVSE 532
Query: 168 AVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKA 227
V ++IAEV S TG+P E+ + ++ R+ KR+ GQ A+ + +A+ + +A
Sbjct: 533 EVTSDDIAEVVSAWTGVPVGKMLEGESEKLLDMENRIGKRLVGQQAAVKAVSDAVRRSRA 592
Query: 228 AKKGLS-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI 286
G+S R G F+F GP GK ELAKA+A+ L+D+ + ++ DM Y E S+
Sbjct: 593 ---GISDPNRPTGSFMFLGPTGVGKTELAKALADFLFDD---ETAMVRIDMSEYMEKHSV 646
Query: 287 KHFFDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKAT 334
+ L V++RPYSVVL D+IEKA+ + N+LL++L D R
Sbjct: 647 SRLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEIEKAHPDVFNILLQVL--DDGRLTD 704
Query: 335 RGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGR--VNEVTGSLFKPSLLKLLDKLVVI 392
D N ++IMTS+L + + + ++ R V V F+P L LD++V+
Sbjct: 705 GQGRTVDFRNVILIMTSNLGSQFMADPSMSPEERRNQVMAVVKDHFRPEFLNRLDEIVLF 764
Query: 393 D 393
D
Sbjct: 765 D 765
>sp|Q8DJ40|CLPB1_THEEB Chaperone protein ClpB 1 OS=Thermosynechococcus elongatus (strain
BP-1) GN=clpB1 PE=3 SV=1
Length = 871
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 26/237 (10%)
Query: 173 EIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL 232
+IAE+ SK TGIP S ++ + ++ L KRV GQ++A+ + EA+ + +A GL
Sbjct: 540 DIAEIISKWTGIPVSKLVESEAQKLLHLEEELHKRVVGQDEAVSAVAEAIQRSRA---GL 596
Query: 233 S-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
+ R + F+F GP GK ELAKA+A ++D + L+ DM Y E ++
Sbjct: 597 ADPNRPIASFIFLGPTGVGKTELAKALAAFMFDTEEA---LVRIDMSEYMEKHAVSRLIG 653
Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
+ L +++RPY+VVLFD+IEKA+ + N+ L+IL D R
Sbjct: 654 APPGYVGYDEGGQLTEAIRRRPYAVVLFDEIEKAHPDVFNVFLQIL--DDGRVTDSQGRT 711
Query: 340 FDLTNTLIIMTSDLKDEQVYEVM-----LTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
D NT+IIMTS++ + + +V + Y RV E + F+P L +D+ ++
Sbjct: 712 VDFKNTIIIMTSNIGSQYILDVAGDDSRYSEMYNRVMEAMRAHFRPEFLNRVDEFII 768
>sp|Q7W9E6|CLPB_BORPA Chaperone protein ClpB OS=Bordetella parapertussis (strain 12822 /
ATCC BAA-587 / NCTC 13253) GN=clpB PE=3 SV=1
Length = 865
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 129/240 (53%), Gaps = 26/240 (10%)
Query: 169 VDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAA 228
V EEIAEV S+ TGIP + ++ +R++ L KRV GQ++A+ ++ +A+ + +A
Sbjct: 537 VGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRA- 595
Query: 229 KKGLS-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287
GL+ R G FLF GP GK EL +A+A+ L+ D++ H+I DM + E S+
Sbjct: 596 --GLADPSRPYGSFLFLGPTGVGKTELTRALADFLF---DSEEHMIRIDMSEFMEKHSVA 650
Query: 288 HFFDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR 335
+ L V+++PYSV+L D++EKA+ + N+LL++L D R
Sbjct: 651 RLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVL--DDGRLTDG 708
Query: 336 GIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVT----GSLFKPSLLKLLDKLVV 391
D NT+I+MTS+L + + + M Y + EV F+P L +D++VV
Sbjct: 709 QGRTVDFRNTVIVMTSNLGSQHI-QSMAGKPYEVIKEVVWDELKHTFRPEFLNRIDEVVV 767
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,886,698
Number of Sequences: 539616
Number of extensions: 8435917
Number of successful extensions: 35630
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 34632
Number of HSP's gapped (non-prelim): 422
length of query: 550
length of database: 191,569,459
effective HSP length: 123
effective length of query: 427
effective length of database: 125,196,691
effective search space: 53458987057
effective search space used: 53458987057
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)