Query 036633
Match_columns 550
No_of_seqs 380 out of 3609
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:00:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 3.2E-93 6.8E-98 781.4 37.3 413 5-481 336-776 (786)
2 TIGR03345 VI_ClpV1 type VI sec 100.0 2.2E-72 4.7E-77 641.3 43.9 453 5-479 353-850 (852)
3 TIGR03346 chaperone_ClpB ATP-d 100.0 7.5E-70 1.6E-74 624.7 46.5 454 5-480 339-846 (852)
4 PRK10865 protein disaggregatio 100.0 7.8E-70 1.7E-74 622.2 44.9 454 5-480 344-849 (857)
5 CHL00095 clpC Clp protease ATP 100.0 3.3E-69 7.1E-74 617.8 42.1 426 4-483 343-805 (821)
6 PRK11034 clpA ATP-dependent Cl 100.0 4.9E-65 1.1E-69 570.9 31.9 362 5-480 352-736 (758)
7 TIGR02639 ClpA ATP-dependent C 100.0 1.4E-63 3E-68 565.5 32.7 361 4-478 347-730 (731)
8 KOG1051 Chaperone HSP104 and r 100.0 2.8E-64 6.1E-69 559.3 19.2 443 7-481 355-854 (898)
9 TIGR00382 clpX endopeptidase C 100.0 2.4E-32 5.3E-37 287.2 21.6 243 196-457 67-379 (413)
10 COG0466 Lon ATP-dependent Lon 100.0 1.1E-29 2.3E-34 272.9 33.3 323 106-470 207-567 (782)
11 PRK05342 clpX ATP-dependent pr 100.0 2.4E-31 5.2E-36 281.2 20.2 246 196-457 61-373 (412)
12 TIGR00763 lon ATP-dependent pr 100.0 1.7E-29 3.7E-34 288.6 31.8 276 152-469 266-564 (775)
13 PRK10787 DNA-binding ATP-depen 100.0 4.3E-29 9.3E-34 283.0 28.9 287 150-481 266-574 (784)
14 COG3604 FhlA Transcriptional r 100.0 2.8E-29 6.1E-34 260.5 21.0 291 206-541 223-534 (550)
15 KOG2004 Mitochondrial ATP-depe 100.0 1E-27 2.2E-32 256.1 32.4 300 127-468 317-653 (906)
16 PF07724 AAA_2: AAA domain (Cd 100.0 1E-29 2.3E-34 238.7 11.0 147 237-389 1-171 (171)
17 COG3829 RocR Transcriptional r 100.0 3.8E-28 8.2E-33 255.5 19.0 288 206-542 245-549 (560)
18 COG2204 AtoC Response regulato 100.0 4E-28 8.7E-33 255.9 18.2 292 203-541 138-445 (464)
19 TIGR02974 phageshock_pspF psp 99.9 1.4E-23 2.9E-28 217.4 17.5 214 208-457 1-228 (329)
20 TIGR01817 nifA Nif-specific re 99.9 3.2E-23 7E-28 228.7 19.1 215 205-457 195-423 (534)
21 PRK05022 anaerobic nitric oxid 99.9 6.5E-23 1.4E-27 224.7 20.8 291 205-542 186-497 (509)
22 COG2256 MGS1 ATPase related to 99.9 4.9E-23 1.1E-27 209.5 17.8 221 206-503 24-252 (436)
23 PRK05201 hslU ATP-dependent pr 99.9 4E-23 8.6E-28 214.8 15.6 250 197-480 6-423 (443)
24 PRK15424 propionate catabolism 99.9 1.6E-22 3.4E-27 220.2 20.8 275 206-542 219-526 (538)
25 CHL00181 cbbX CbbX; Provisiona 99.9 1.5E-22 3.3E-27 205.6 17.9 224 195-466 12-260 (287)
26 TIGR02329 propionate_PrpR prop 99.9 2.2E-22 4.8E-27 219.2 19.3 283 206-542 212-519 (526)
27 PRK11388 DNA-binding transcrip 99.9 2.1E-22 4.5E-27 226.9 18.5 280 206-542 325-620 (638)
28 COG1221 PspF Transcriptional r 99.9 3E-22 6.5E-27 208.1 16.3 301 200-544 72-390 (403)
29 COG1219 ClpX ATP-dependent pro 99.9 3.6E-22 7.8E-27 196.9 14.8 253 197-466 52-370 (408)
30 TIGR02880 cbbX_cfxQ probable R 99.9 2.1E-21 4.5E-26 197.3 19.5 212 197-457 13-248 (284)
31 TIGR00390 hslU ATP-dependent p 99.9 6.4E-22 1.4E-26 205.8 15.6 249 198-480 4-421 (441)
32 PRK11608 pspF phage shock prot 99.9 2.1E-21 4.5E-26 201.1 18.3 293 205-542 5-315 (326)
33 COG3283 TyrR Transcriptional r 99.9 6.1E-21 1.3E-25 190.5 20.1 215 206-457 204-427 (511)
34 PRK10820 DNA-binding transcrip 99.9 2.7E-21 5.9E-26 212.1 18.4 215 206-457 204-432 (520)
35 PRK15429 formate hydrogenlyase 99.9 8.5E-21 1.8E-25 215.3 22.3 280 207-542 377-673 (686)
36 TIGR02915 PEP_resp_reg putativ 99.9 2.1E-20 4.6E-25 202.0 20.3 282 206-542 139-434 (445)
37 PF05496 RuvB_N: Holliday junc 99.9 7.4E-21 1.6E-25 182.4 14.3 190 198-441 16-212 (233)
38 PRK10923 glnG nitrogen regulat 99.9 1.4E-20 3E-25 204.9 18.2 215 206-457 138-366 (469)
39 TIGR02881 spore_V_K stage V sp 99.8 3.7E-20 8.1E-25 186.2 18.7 203 207-457 7-233 (261)
40 TIGR01818 ntrC nitrogen regula 99.8 5.3E-20 1.2E-24 199.9 17.8 215 206-457 134-362 (463)
41 PRK15115 response regulator Gl 99.8 6.9E-20 1.5E-24 198.0 17.3 280 206-542 134-427 (444)
42 PRK11361 acetoacetate metaboli 99.8 2.4E-19 5.1E-24 194.4 20.4 287 206-542 143-446 (457)
43 PF00158 Sigma54_activat: Sigm 99.8 4.4E-20 9.5E-25 173.0 11.8 154 208-391 1-166 (168)
44 KOG0745 Putative ATP-dependent 99.8 2.3E-19 5.1E-24 183.2 14.7 253 197-466 136-511 (564)
45 KOG2028 ATPase related to the 99.8 3.9E-19 8.4E-24 178.0 13.1 238 206-503 138-382 (554)
46 PRK10365 transcriptional regul 99.8 1.4E-18 3.1E-23 187.4 18.4 281 207-542 140-434 (441)
47 TIGR02902 spore_lonB ATP-depen 99.8 9E-19 1.9E-23 192.3 17.1 197 207-457 66-307 (531)
48 PRK14956 DNA polymerase III su 99.8 2.6E-18 5.7E-23 182.9 18.9 191 205-457 17-225 (484)
49 COG3284 AcoR Transcriptional a 99.8 1E-18 2.2E-23 187.6 15.6 263 209-542 316-594 (606)
50 PRK13341 recombination factor 99.8 3.7E-18 8.1E-23 192.0 19.4 230 206-503 28-261 (725)
51 COG1223 Predicted ATPase (AAA+ 99.8 7.6E-18 1.6E-22 162.2 16.6 203 204-468 119-340 (368)
52 KOG2170 ATPase of the AAA+ sup 99.8 1.2E-17 2.6E-22 164.3 17.2 227 195-445 71-326 (344)
53 PRK07003 DNA polymerase III su 99.8 1.1E-17 2.4E-22 184.3 18.7 186 206-457 16-223 (830)
54 PRK14960 DNA polymerase III su 99.8 2.2E-17 4.8E-22 180.2 19.2 189 206-457 15-222 (702)
55 PRK12323 DNA polymerase III su 99.8 1.6E-17 3.5E-22 180.9 17.5 185 206-456 16-227 (700)
56 COG1220 HslU ATP-dependent pro 99.8 5.7E-18 1.2E-22 168.4 12.7 247 199-479 8-423 (444)
57 PRK13342 recombination factor 99.8 2.3E-17 4.9E-22 176.6 18.3 219 206-503 12-233 (413)
58 PRK14949 DNA polymerase III su 99.7 3.8E-17 8.2E-22 183.2 19.7 185 206-456 16-222 (944)
59 PRK14958 DNA polymerase III su 99.7 2.6E-17 5.5E-22 179.4 17.7 186 206-457 16-223 (509)
60 KOG0989 Replication factor C, 99.7 4.1E-17 8.9E-22 161.1 16.5 176 206-440 36-220 (346)
61 PLN03025 replication factor C 99.7 4.7E-17 1E-21 168.4 17.6 187 206-456 13-202 (319)
62 PRK07994 DNA polymerase III su 99.7 8E-17 1.7E-21 178.1 19.7 190 205-456 15-222 (647)
63 PRK14957 DNA polymerase III su 99.7 8.8E-17 1.9E-21 175.2 19.7 190 206-457 16-223 (546)
64 PRK14962 DNA polymerase III su 99.7 7.2E-17 1.6E-21 174.2 18.5 187 205-457 13-221 (472)
65 PRK14952 DNA polymerase III su 99.7 1.3E-16 2.7E-21 175.5 20.0 190 206-457 13-222 (584)
66 PRK14964 DNA polymerase III su 99.7 1.1E-16 2.4E-21 172.2 18.3 186 206-457 13-220 (491)
67 PRK14961 DNA polymerase III su 99.7 1.5E-16 3.3E-21 167.4 18.7 187 205-457 15-223 (363)
68 COG1222 RPT1 ATP-dependent 26S 99.7 1.5E-16 3.2E-21 160.1 16.0 189 206-457 151-367 (406)
69 PRK07764 DNA polymerase III su 99.7 2.5E-16 5.5E-21 179.2 19.5 189 206-457 15-224 (824)
70 TIGR00635 ruvB Holliday juncti 99.7 4.4E-16 9.4E-21 160.1 18.8 195 206-457 4-204 (305)
71 PRK08691 DNA polymerase III su 99.7 3.6E-16 7.8E-21 172.3 19.2 185 206-457 16-223 (709)
72 PRK00080 ruvB Holliday junctio 99.7 3.5E-16 7.5E-21 162.6 17.9 192 206-457 25-225 (328)
73 PRK14951 DNA polymerase III su 99.7 3.5E-16 7.5E-21 172.7 18.3 186 206-457 16-228 (618)
74 PRK06645 DNA polymerase III su 99.7 5E-16 1.1E-20 168.4 18.9 186 206-457 21-232 (507)
75 COG2255 RuvB Holliday junction 99.7 1.8E-16 4E-21 155.0 13.9 201 199-456 19-229 (332)
76 PRK14969 DNA polymerase III su 99.7 4.1E-16 8.9E-21 170.9 18.0 185 206-457 16-223 (527)
77 PRK14963 DNA polymerase III su 99.7 7.3E-16 1.6E-20 167.7 19.6 186 206-457 14-220 (504)
78 PRK05896 DNA polymerase III su 99.7 6.8E-16 1.5E-20 168.5 18.7 187 205-457 15-223 (605)
79 PRK14959 DNA polymerase III su 99.7 7.1E-16 1.5E-20 169.2 18.9 185 206-456 16-222 (624)
80 PRK05563 DNA polymerase III su 99.7 8E-16 1.7E-20 169.8 19.1 187 204-457 14-223 (559)
81 PRK14965 DNA polymerase III su 99.7 6.6E-16 1.4E-20 171.2 17.9 187 205-457 15-223 (576)
82 PHA02544 44 clamp loader, smal 99.7 2.6E-15 5.6E-20 155.1 20.2 189 206-456 21-211 (316)
83 PRK07133 DNA polymerase III su 99.7 1.7E-15 3.6E-20 168.5 19.6 187 205-457 17-222 (725)
84 PRK08451 DNA polymerase III su 99.7 2E-15 4.2E-20 164.0 19.4 186 206-457 14-221 (535)
85 PRK06305 DNA polymerase III su 99.7 2.3E-15 5E-20 162.2 19.6 186 206-457 17-225 (451)
86 PRK06647 DNA polymerase III su 99.7 2.8E-15 6.1E-20 165.0 19.1 187 205-457 15-223 (563)
87 PRK12402 replication factor C 99.7 4.7E-15 1E-19 154.2 19.5 187 206-456 15-228 (337)
88 PRK14955 DNA polymerase III su 99.7 2.5E-15 5.4E-20 160.0 17.7 187 205-457 15-231 (397)
89 PRK09111 DNA polymerase III su 99.7 3.7E-15 8E-20 164.8 19.5 187 205-457 23-236 (598)
90 CHL00195 ycf46 Ycf46; Provisio 99.7 2.7E-15 6E-20 162.1 17.8 194 206-457 228-439 (489)
91 TIGR02903 spore_lon_C ATP-depe 99.6 3E-14 6.5E-19 159.0 25.8 201 206-457 154-397 (615)
92 TIGR02397 dnaX_nterm DNA polym 99.6 4.6E-15 1E-19 155.6 18.2 187 205-457 13-221 (355)
93 PRK13531 regulatory ATPase Rav 99.6 3.2E-15 7E-20 158.9 17.1 227 194-468 8-269 (498)
94 PRK14953 DNA polymerase III su 99.6 4.5E-15 9.8E-20 161.0 18.6 185 206-457 16-223 (486)
95 PRK14954 DNA polymerase III su 99.6 8.7E-15 1.9E-19 162.1 19.6 187 205-457 15-231 (620)
96 PRK14971 DNA polymerase III su 99.6 7.9E-15 1.7E-19 163.2 19.0 187 205-457 16-225 (614)
97 PRK14970 DNA polymerase III su 99.6 1.3E-14 2.9E-19 153.0 19.2 189 205-457 16-212 (367)
98 KOG0730 AAA+-type ATPase [Post 99.6 3.4E-15 7.4E-20 160.4 14.7 189 205-457 433-647 (693)
99 PRK14950 DNA polymerase III su 99.6 1.3E-14 2.8E-19 161.6 18.5 188 204-457 14-224 (585)
100 PRK04195 replication factor C 99.6 1.1E-14 2.4E-19 158.9 17.5 183 206-456 14-204 (482)
101 PRK00440 rfc replication facto 99.6 4.2E-14 9.2E-19 145.9 20.2 184 207-457 18-206 (319)
102 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.3E-14 2.9E-19 142.3 15.6 180 210-457 21-204 (226)
103 PRK07940 DNA polymerase III su 99.6 2.4E-14 5.2E-19 151.3 18.4 159 206-408 5-186 (394)
104 PRK14948 DNA polymerase III su 99.6 3E-14 6.5E-19 158.6 19.4 186 206-457 16-225 (620)
105 PRK03992 proteasome-activating 99.6 1.7E-14 3.6E-19 153.2 16.0 198 205-457 130-347 (389)
106 CHL00081 chlI Mg-protoporyphyr 99.6 4E-14 8.8E-19 146.5 18.4 225 206-468 17-307 (350)
107 TIGR02640 gas_vesic_GvpN gas v 99.6 4.6E-14 9.9E-19 142.1 17.1 158 212-410 4-197 (262)
108 PRK08903 DnaA regulatory inact 99.6 8.8E-14 1.9E-18 136.9 18.5 158 239-457 43-202 (227)
109 TIGR01242 26Sp45 26S proteasom 99.6 2.6E-14 5.7E-19 150.7 15.6 201 202-457 118-338 (364)
110 CHL00176 ftsH cell division pr 99.6 3E-14 6.4E-19 158.7 16.4 196 206-457 183-398 (638)
111 COG2812 DnaX DNA polymerase II 99.6 1.2E-14 2.6E-19 156.2 12.8 189 206-457 16-223 (515)
112 KOG0733 Nuclear AAA ATPase (VC 99.6 9.9E-14 2.1E-18 147.4 17.1 190 207-457 512-728 (802)
113 TIGR01243 CDC48 AAA family ATP 99.6 4.2E-14 9.2E-19 161.8 15.5 194 205-457 452-667 (733)
114 PTZ00454 26S protease regulato 99.5 9.4E-14 2E-18 147.1 16.9 192 206-457 145-361 (398)
115 TIGR01241 FtsH_fam ATP-depende 99.5 5E-14 1.1E-18 154.3 14.8 162 206-412 55-239 (495)
116 TIGR02030 BchI-ChlI magnesium 99.5 1.9E-13 4.1E-18 141.5 18.3 224 206-467 4-293 (337)
117 PHA02244 ATPase-like protein 99.5 5.8E-13 1.3E-17 137.4 21.5 195 204-438 94-305 (383)
118 TIGR02442 Cob-chelat-sub cobal 99.5 2.7E-13 5.9E-18 152.2 20.6 210 206-457 4-279 (633)
119 PRK08084 DNA replication initi 99.5 2.8E-13 6.2E-18 134.1 17.3 159 239-457 46-212 (235)
120 PRK13407 bchI magnesium chelat 99.5 3.5E-13 7.7E-18 139.2 17.8 224 206-467 8-290 (334)
121 PF00004 AAA: ATPase family as 99.5 1E-13 2.2E-18 123.6 11.5 116 241-393 1-131 (132)
122 PRK06893 DNA replication initi 99.5 5E-13 1.1E-17 131.9 17.3 163 239-457 40-206 (229)
123 PF07728 AAA_5: AAA domain (dy 99.5 2.6E-14 5.7E-19 129.6 7.2 116 240-386 1-139 (139)
124 TIGR02639 ClpA ATP-dependent C 99.5 1.8E-13 3.9E-18 156.3 15.5 178 206-440 182-381 (731)
125 COG0714 MoxR-like ATPases [Gen 99.5 1.5E-13 3.2E-18 143.0 13.2 158 195-393 13-187 (329)
126 PF01078 Mg_chelatase: Magnesi 99.5 3.4E-14 7.5E-19 135.7 7.4 179 206-401 3-205 (206)
127 PRK09112 DNA polymerase III su 99.5 1.5E-12 3.2E-17 136.0 20.3 188 205-457 22-243 (351)
128 TIGR03345 VI_ClpV1 type VI sec 99.5 4.4E-13 9.6E-18 154.5 17.1 181 206-440 187-386 (852)
129 KOG0736 Peroxisome assembly fa 99.5 2.7E-13 5.8E-18 147.4 14.3 194 206-457 672-890 (953)
130 COG0464 SpoVK ATPases of the A 99.5 2.1E-13 4.5E-18 149.6 12.9 192 207-457 243-457 (494)
131 PTZ00361 26 proteosome regulat 99.5 4.1E-13 8.9E-18 143.3 14.6 196 206-457 183-399 (438)
132 PRK07471 DNA polymerase III su 99.5 1E-12 2.2E-17 137.9 16.7 156 206-410 19-212 (365)
133 PF13177 DNA_pol3_delta2: DNA 99.5 6E-13 1.3E-17 124.2 13.3 141 210-399 1-162 (162)
134 PRK08727 hypothetical protein; 99.5 2.6E-12 5.5E-17 127.2 18.5 185 204-457 18-207 (233)
135 TIGR00362 DnaA chromosomal rep 99.5 1.3E-12 2.9E-17 139.6 17.8 197 203-457 108-313 (405)
136 KOG0734 AAA+-type ATPase conta 99.5 5.1E-13 1.1E-17 140.0 13.8 189 205-457 303-516 (752)
137 KOG0733 Nuclear AAA ATPase (VC 99.5 4.6E-13 9.9E-18 142.4 13.6 159 207-412 191-375 (802)
138 CHL00206 ycf2 Ycf2; Provisiona 99.5 7.2E-13 1.6E-17 156.3 15.4 169 239-457 1631-1852(2281)
139 PRK05564 DNA polymerase III su 99.5 2.3E-12 5E-17 133.1 17.6 155 206-410 4-164 (313)
140 PRK07399 DNA polymerase III su 99.4 1.8E-12 3.9E-17 133.5 16.4 157 206-411 4-195 (314)
141 TIGR03689 pup_AAA proteasome A 99.4 5.5E-13 1.2E-17 144.3 13.0 170 206-413 182-380 (512)
142 PLN00020 ribulose bisphosphate 99.4 1.4E-12 3.1E-17 133.6 15.1 176 208-438 121-326 (413)
143 PRK05642 DNA replication initi 99.4 4.6E-12 1E-16 125.4 18.0 162 239-457 46-211 (234)
144 COG1224 TIP49 DNA helicase TIP 99.4 2.6E-12 5.7E-17 129.3 16.0 111 303-457 293-404 (450)
145 TIGR00678 holB DNA polymerase 99.4 2.5E-12 5.5E-17 122.9 15.4 146 238-440 14-181 (188)
146 PF14532 Sigma54_activ_2: Sigm 99.4 3.4E-13 7.4E-18 122.4 8.7 131 209-389 1-131 (138)
147 KOG0727 26S proteasome regulat 99.4 9.1E-13 2E-17 126.9 11.7 144 206-393 155-324 (408)
148 TIGR00368 Mg chelatase-related 99.4 2.4E-12 5.1E-17 139.9 16.4 232 206-462 192-480 (499)
149 PF06068 TIP49: TIP49 C-termin 99.4 1.9E-12 4E-17 132.4 14.4 112 303-457 280-391 (398)
150 KOG0738 AAA+-type ATPase [Post 99.4 2E-12 4.4E-17 131.4 14.0 191 206-457 212-427 (491)
151 COG0470 HolB ATPase involved i 99.4 2.9E-12 6.2E-17 132.4 14.8 143 207-393 2-166 (325)
152 PRK00149 dnaA chromosomal repl 99.4 3.7E-12 7.9E-17 138.1 16.0 169 239-457 149-325 (450)
153 PF00308 Bac_DnaA: Bacterial d 99.4 3.8E-12 8.3E-17 124.7 14.6 196 204-457 7-211 (219)
154 PRK14088 dnaA chromosomal repl 99.4 6.9E-12 1.5E-16 135.1 17.9 197 203-457 103-308 (440)
155 PRK08058 DNA polymerase III su 99.4 2.4E-12 5.2E-17 133.7 13.8 152 206-408 5-179 (329)
156 KOG0728 26S proteasome regulat 99.4 8.2E-12 1.8E-16 120.2 15.5 188 208-457 149-363 (404)
157 COG4650 RtcR Sigma54-dependent 99.4 1.5E-12 3.3E-17 127.8 9.8 220 203-457 181-421 (531)
158 cd00009 AAA The AAA+ (ATPases 99.4 1.1E-11 2.5E-16 111.1 14.8 145 209-393 1-150 (151)
159 PF07726 AAA_3: ATPase family 99.4 1.4E-12 2.9E-17 115.0 8.3 102 240-353 1-112 (131)
160 PRK14087 dnaA chromosomal repl 99.4 1.5E-11 3.2E-16 132.8 18.0 202 202-457 112-322 (450)
161 smart00763 AAA_PrkA PrkA AAA d 99.4 9.1E-12 2E-16 128.6 15.1 203 205-440 50-349 (361)
162 PRK04132 replication factor C 99.4 6.5E-12 1.4E-16 142.6 15.2 166 239-457 565-734 (846)
163 TIGR01650 PD_CobS cobaltochela 99.4 8.1E-12 1.8E-16 127.6 14.4 147 239-410 65-232 (327)
164 PF06309 Torsin: Torsin; Inte 99.4 2.9E-12 6.2E-17 112.7 9.5 108 195-307 14-127 (127)
165 PRK12422 chromosomal replicati 99.4 1.2E-11 2.7E-16 133.0 16.3 199 203-457 109-316 (445)
166 COG0606 Predicted ATPase with 99.4 1.6E-12 3.4E-17 136.4 8.9 213 166-399 139-380 (490)
167 PRK11331 5-methylcytosine-spec 99.4 2.9E-11 6.3E-16 128.0 18.3 150 207-393 176-356 (459)
168 PRK14086 dnaA chromosomal repl 99.3 2.3E-11 4.9E-16 133.4 17.8 198 202-457 285-491 (617)
169 TIGR02928 orc1/cdc6 family rep 99.3 2E-11 4.3E-16 128.7 16.6 208 203-457 12-249 (365)
170 PRK06620 hypothetical protein; 99.3 3E-11 6.4E-16 117.9 16.0 145 239-457 45-192 (214)
171 KOG0731 AAA+-type ATPase conta 99.3 2E-11 4.3E-16 135.3 16.3 160 204-412 309-496 (774)
172 KOG0742 AAA+-type ATPase [Post 99.3 1.5E-11 3.2E-16 125.6 13.9 185 229-457 374-587 (630)
173 TIGR02031 BchD-ChlD magnesium 99.3 2.8E-11 6.2E-16 134.6 17.0 186 239-456 17-232 (589)
174 PRK11034 clpA ATP-dependent Cl 99.3 2E-11 4.3E-16 138.6 15.8 173 206-438 186-383 (758)
175 PRK10733 hflB ATP-dependent me 99.3 2.1E-11 4.6E-16 137.2 14.8 194 207-457 153-367 (644)
176 PTZ00111 DNA replication licen 99.3 8.4E-11 1.8E-15 133.1 19.5 204 195-411 439-657 (915)
177 PTZ00112 origin recognition co 99.3 5E-11 1.1E-15 132.7 16.6 191 203-441 752-969 (1164)
178 CHL00095 clpC Clp protease ATP 99.3 3.5E-11 7.6E-16 139.2 15.8 180 206-439 179-376 (821)
179 PRK09087 hypothetical protein; 99.3 1.7E-10 3.7E-15 113.5 18.1 177 203-457 19-198 (226)
180 KOG0739 AAA+-type ATPase [Post 99.3 3.5E-11 7.6E-16 118.6 13.0 178 206-439 133-330 (439)
181 KOG1942 DNA helicase, TBP-inte 99.3 8.2E-11 1.8E-15 115.7 14.8 115 303-460 298-414 (456)
182 TIGR01243 CDC48 AAA family ATP 99.3 3.7E-11 8.1E-16 137.7 14.6 160 207-411 179-359 (733)
183 PRK05707 DNA polymerase III su 99.3 4.9E-11 1.1E-15 123.5 13.6 129 238-410 22-177 (328)
184 PRK10865 protein disaggregatio 99.3 5.2E-11 1.1E-15 137.8 15.1 174 206-436 178-373 (857)
185 KOG0744 AAA+-type ATPase [Post 99.3 2.5E-11 5.5E-16 120.8 10.6 137 239-416 178-345 (423)
186 PRK00411 cdc6 cell division co 99.3 1.7E-10 3.8E-15 122.8 17.9 203 204-456 28-256 (394)
187 TIGR00764 lon_rel lon-related 99.2 6E-11 1.3E-15 132.3 13.9 129 302-457 218-366 (608)
188 KOG0991 Replication factor C, 99.2 6.8E-11 1.5E-15 113.0 12.2 174 205-438 26-202 (333)
189 PRK06871 DNA polymerase III su 99.2 1.7E-10 3.6E-15 118.9 16.0 145 210-409 6-177 (325)
190 smart00350 MCM minichromosome 99.2 6.7E-11 1.5E-15 129.9 13.9 199 195-412 192-401 (509)
191 TIGR03346 chaperone_ClpB ATP-d 99.2 1E-10 2.2E-15 135.8 15.8 176 206-438 173-370 (852)
192 KOG0735 AAA+-type ATPase [Post 99.2 1.6E-10 3.5E-15 125.0 15.2 230 159-457 626-880 (952)
193 PRK13765 ATP-dependent proteas 99.2 6.9E-11 1.5E-15 131.5 12.5 117 302-446 227-358 (637)
194 PRK08769 DNA polymerase III su 99.2 2.4E-10 5.1E-15 117.6 15.3 152 208-408 6-182 (319)
195 KOG0737 AAA+-type ATPase [Post 99.2 2.5E-10 5.5E-15 116.1 15.0 171 237-466 125-318 (386)
196 PRK06090 DNA polymerase III su 99.2 4.4E-10 9.5E-15 115.5 15.9 145 210-408 7-177 (319)
197 KOG0652 26S proteasome regulat 99.2 1.1E-10 2.4E-15 113.1 10.4 156 206-411 171-355 (424)
198 PRK09862 putative ATP-dependen 99.2 1.1E-10 2.4E-15 126.5 11.7 169 206-393 191-386 (506)
199 KOG0726 26S proteasome regulat 99.2 5.9E-11 1.3E-15 116.6 8.6 157 205-409 184-367 (440)
200 PRK07993 DNA polymerase III su 99.2 4E-10 8.7E-15 117.0 15.3 145 210-408 6-177 (334)
201 KOG0729 26S proteasome regulat 99.2 1.6E-10 3.5E-15 112.3 10.6 146 205-395 176-348 (435)
202 COG1239 ChlI Mg-chelatase subu 99.2 1.9E-09 4E-14 112.1 18.6 212 203-456 14-296 (423)
203 KOG0743 AAA+-type ATPase [Post 99.1 2.3E-10 5E-15 119.3 11.9 131 236-412 231-384 (457)
204 PRK06964 DNA polymerase III su 99.1 6.6E-10 1.4E-14 115.3 15.2 135 237-409 20-202 (342)
205 COG0465 HflB ATP-dependent Zn 99.1 3.2E-10 7E-15 123.7 12.9 159 205-411 149-333 (596)
206 KOG0651 26S proteasome regulat 99.1 1.8E-10 3.9E-15 114.4 9.1 188 166-393 84-301 (388)
207 TIGR03015 pepcterm_ATPase puta 99.1 8.9E-09 1.9E-13 103.7 21.6 177 238-457 43-241 (269)
208 PRK12377 putative replication 99.1 3.1E-10 6.6E-15 112.9 10.4 144 210-393 82-233 (248)
209 COG0593 DnaA ATPase involved i 99.1 5.2E-09 1.1E-13 110.0 19.3 184 203-457 85-289 (408)
210 KOG2035 Replication factor C, 99.1 3.1E-09 6.7E-14 104.2 15.6 163 239-456 35-227 (351)
211 COG1474 CDC6 Cdc6-related prot 99.1 3.2E-09 6.9E-14 111.5 16.2 191 203-441 14-225 (366)
212 TIGR00602 rad24 checkpoint pro 99.1 2.7E-09 6E-14 118.6 16.2 210 200-457 78-323 (637)
213 PRK08699 DNA polymerase III su 99.0 3.1E-09 6.8E-14 110.0 14.9 134 237-408 20-182 (325)
214 KOG1969 DNA replication checkp 99.0 4.8E-09 1E-13 114.4 16.4 173 232-457 318-510 (877)
215 PRK05917 DNA polymerase III su 99.0 4.8E-09 1E-13 106.0 14.6 130 213-393 4-152 (290)
216 PF05673 DUF815: Protein of un 99.0 1.3E-08 2.7E-13 99.7 16.5 201 206-456 27-243 (249)
217 PRK06526 transposase; Provisio 99.0 5E-10 1.1E-14 112.0 7.0 107 238-360 98-207 (254)
218 KOG0740 AAA+-type ATPase [Post 99.0 4.9E-09 1.1E-13 110.2 14.6 198 199-457 146-366 (428)
219 PF10431 ClpB_D2-small: C-term 99.0 2.8E-10 6.1E-15 93.6 4.2 76 398-476 1-80 (81)
220 PRK08116 hypothetical protein; 99.0 3.8E-09 8.2E-14 106.6 13.1 122 239-393 115-247 (268)
221 PRK07276 DNA polymerase III su 99.0 6.4E-09 1.4E-13 105.4 12.6 147 210-407 6-171 (290)
222 KOG0732 AAA+-type ATPase conta 99.0 8.5E-09 1.8E-13 117.7 14.8 195 206-457 265-484 (1080)
223 PF01695 IstB_IS21: IstB-like 98.9 8.7E-10 1.9E-14 104.5 5.6 120 238-386 47-171 (178)
224 PRK07952 DNA replication prote 98.9 5.7E-09 1.2E-13 103.6 11.1 142 210-393 80-232 (244)
225 PRK15455 PrkA family serine pr 98.9 6.1E-09 1.3E-13 112.7 11.7 198 207-438 77-366 (644)
226 COG0542 clpA ATP-binding subun 98.9 1.9E-08 4.2E-13 112.7 14.7 176 205-438 169-367 (786)
227 KOG2680 DNA helicase TIP49, TB 98.9 1.7E-08 3.7E-13 99.9 12.1 102 303-441 290-391 (454)
228 PRK08181 transposase; Validate 98.9 8.7E-09 1.9E-13 103.7 10.4 128 239-393 107-240 (269)
229 PRK13406 bchD magnesium chelat 98.9 5.3E-08 1.1E-12 107.9 17.1 182 239-457 26-225 (584)
230 smart00382 AAA ATPases associa 98.9 3.1E-08 6.8E-13 87.6 12.4 82 239-323 3-100 (148)
231 COG1484 DnaC DNA replication p 98.9 1.3E-08 2.7E-13 102.0 10.6 106 237-360 104-215 (254)
232 PRK06835 DNA replication prote 98.8 1.5E-08 3.3E-13 104.9 10.5 117 239-388 184-307 (329)
233 PRK07132 DNA polymerase III su 98.8 7.9E-08 1.7E-12 98.2 15.4 144 214-408 4-159 (299)
234 PF13173 AAA_14: AAA domain 98.8 3.3E-08 7.1E-13 88.5 10.5 122 239-403 3-127 (128)
235 KOG0730 AAA+-type ATPase [Post 98.8 4.8E-08 1E-12 106.0 13.3 197 206-457 184-396 (693)
236 COG5271 MDN1 AAA ATPase contai 98.8 2.4E-08 5.1E-13 115.3 11.2 148 239-416 1544-1708(4600)
237 PRK09183 transposase/IS protei 98.8 1.8E-08 4E-13 101.2 8.6 106 239-360 103-212 (259)
238 PRK05818 DNA polymerase III su 98.8 2.7E-08 5.9E-13 98.6 9.3 126 237-401 6-150 (261)
239 KOG0990 Replication factor C, 98.8 1.1E-08 2.4E-13 102.4 6.3 174 206-438 41-220 (360)
240 PF01637 Arch_ATPase: Archaeal 98.7 2.5E-07 5.3E-12 90.3 14.7 178 208-439 1-223 (234)
241 KOG0735 AAA+-type ATPase [Post 98.7 5E-07 1.1E-11 98.6 17.3 186 237-474 430-634 (952)
242 PF12774 AAA_6: Hydrolytic ATP 98.7 4.7E-07 1E-11 89.3 14.8 103 240-354 34-144 (231)
243 PF07693 KAP_NTPase: KAP famil 98.6 2.6E-06 5.6E-11 88.2 19.6 124 304-457 175-317 (325)
244 PRK06921 hypothetical protein; 98.6 1.6E-07 3.5E-12 94.7 9.7 104 239-359 118-230 (266)
245 PRK08939 primosomal protein Dn 98.6 2.6E-07 5.5E-12 95.0 11.1 127 210-360 135-267 (306)
246 COG2607 Predicted ATPase (AAA+ 98.5 6.1E-06 1.3E-10 80.0 17.6 204 207-457 61-276 (287)
247 PF13401 AAA_22: AAA domain; P 98.5 2.3E-07 5E-12 82.6 7.5 90 239-328 5-115 (131)
248 KOG0741 AAA+-type ATPase [Post 98.5 4E-07 8.6E-12 96.4 10.2 164 239-457 257-450 (744)
249 KOG0741 AAA+-type ATPase [Post 98.5 9.6E-07 2.1E-11 93.6 13.0 82 237-325 536-628 (744)
250 PF12775 AAA_7: P-loop contain 98.5 1.1E-07 2.4E-12 96.2 5.3 188 239-457 34-250 (272)
251 COG1241 MCM2 Predicted ATPase 98.5 1.4E-06 3.1E-11 97.0 13.5 247 197-466 277-577 (682)
252 COG5271 MDN1 AAA ATPase contai 98.5 1.6E-06 3.4E-11 101.0 13.7 141 239-411 889-1047(4600)
253 KOG0736 Peroxisome assembly fa 98.4 5.4E-06 1.2E-10 91.5 16.7 164 208-413 403-578 (953)
254 PF00493 MCM: MCM2/3/5 family 98.4 1.8E-07 4E-12 97.3 3.8 194 195-413 13-223 (331)
255 PF03215 Rad17: Rad17 cell cyc 98.4 5.8E-06 1.2E-10 90.6 15.2 209 208-457 21-263 (519)
256 KOG0478 DNA replication licens 98.4 6.1E-06 1.3E-10 90.0 14.4 220 196-440 419-673 (804)
257 TIGR02688 conserved hypothetic 98.4 6.4E-06 1.4E-10 86.8 14.1 141 166-355 167-314 (449)
258 PF05729 NACHT: NACHT domain 98.3 7.3E-06 1.6E-10 75.5 12.9 137 240-412 2-164 (166)
259 PF08298 AAA_PrkA: PrkA AAA do 98.3 6.4E-06 1.4E-10 84.8 12.1 200 204-439 59-345 (358)
260 KOG2227 Pre-initiation complex 98.3 1.2E-05 2.6E-10 84.7 13.3 189 203-441 147-359 (529)
261 PRK06581 DNA polymerase III su 98.2 3.4E-05 7.3E-10 75.5 14.2 133 239-411 16-161 (263)
262 PF00910 RNA_helicase: RNA hel 98.2 1.9E-06 4.1E-11 74.7 4.3 96 241-353 1-107 (107)
263 PF00931 NB-ARC: NB-ARC domain 98.1 2.2E-05 4.8E-10 79.6 12.5 148 212-411 2-170 (287)
264 PHA00729 NTP-binding motif con 98.1 2.8E-05 6.2E-10 75.9 12.0 25 239-263 18-42 (226)
265 PF05621 TniB: Bacterial TniB 98.1 0.00024 5.3E-09 72.0 18.9 242 167-467 5-273 (302)
266 KOG1514 Origin recognition com 98.1 2.3E-05 4.9E-10 86.1 12.2 205 204-457 394-623 (767)
267 PHA02774 E1; Provisional 98.1 8E-06 1.7E-10 89.0 8.6 122 239-400 435-560 (613)
268 PRK14700 recombination factor 98.0 1.1E-05 2.4E-10 81.4 7.2 109 376-503 19-129 (300)
269 KOG0480 DNA replication licens 98.0 2.9E-05 6.2E-10 84.3 10.7 198 195-411 334-542 (764)
270 PRK12723 flagellar biosynthesi 98.0 0.00045 9.9E-09 73.2 19.7 113 237-360 173-304 (388)
271 TIGR01425 SRP54_euk signal rec 98.0 0.00026 5.7E-09 75.7 17.3 105 237-357 99-228 (429)
272 KOG1970 Checkpoint RAD17-RFC c 97.9 9.4E-05 2E-09 79.3 12.8 148 235-415 106-284 (634)
273 KOG0477 DNA replication licens 97.9 1E-05 2.2E-10 87.3 4.2 175 201-393 444-630 (854)
274 cd01120 RecA-like_NTPases RecA 97.9 7.3E-05 1.6E-09 68.3 9.2 38 240-280 1-38 (165)
275 PRK11889 flhF flagellar biosyn 97.8 0.00037 7.9E-09 73.3 14.7 89 236-328 239-349 (436)
276 PRK05703 flhF flagellar biosyn 97.8 0.0017 3.6E-08 70.0 20.3 107 239-359 222-348 (424)
277 PF00448 SRP54: SRP54-type pro 97.8 0.00021 4.5E-09 68.9 11.9 107 238-359 1-131 (196)
278 cd01131 PilT Pilus retraction 97.8 7.4E-05 1.6E-09 72.1 8.5 85 239-328 2-99 (198)
279 COG3267 ExeA Type II secretory 97.8 0.00098 2.1E-08 65.6 15.7 162 239-439 52-234 (269)
280 PRK00771 signal recognition pa 97.8 0.00078 1.7E-08 72.5 16.4 76 236-315 93-189 (437)
281 PHA02624 large T antigen; Prov 97.8 0.00018 3.9E-09 78.9 11.6 115 239-393 432-560 (647)
282 PF12780 AAA_8: P-loop contain 97.8 0.00027 5.8E-09 71.4 12.0 167 208-413 10-212 (268)
283 COG1618 Predicted nucleotide k 97.7 9.1E-05 2E-09 67.8 7.4 90 239-328 6-130 (179)
284 cd01129 PulE-GspE PulE/GspE Th 97.7 9.1E-05 2E-09 74.7 7.9 84 239-328 81-174 (264)
285 PRK10536 hypothetical protein; 97.7 0.00044 9.5E-09 68.8 12.1 60 180-261 38-97 (262)
286 PF03969 AFG1_ATPase: AFG1-lik 97.7 9.9E-05 2.1E-09 77.6 7.9 102 237-360 61-174 (362)
287 PRK10867 signal recognition pa 97.7 0.00063 1.4E-08 73.1 14.0 85 237-324 99-208 (433)
288 PRK14974 cell division protein 97.7 0.0016 3.4E-08 67.9 16.1 86 237-325 139-248 (336)
289 PRK04296 thymidine kinase; Pro 97.6 0.00035 7.5E-09 66.9 10.4 86 240-328 4-106 (190)
290 PRK14722 flhF flagellar biosyn 97.6 0.0045 9.7E-08 65.3 19.3 111 237-359 136-263 (374)
291 TIGR01613 primase_Cterm phage/ 97.6 0.00077 1.7E-08 69.4 13.4 150 203-393 46-202 (304)
292 TIGR01420 pilT_fam pilus retra 97.6 0.00015 3.2E-09 76.1 8.1 85 239-328 123-220 (343)
293 KOG3347 Predicted nucleotide k 97.6 6.9E-05 1.5E-09 67.6 4.7 69 239-328 8-76 (176)
294 PHA01747 putative ATP-dependen 97.6 0.00012 2.5E-09 75.5 6.8 145 238-403 190-350 (425)
295 COG3854 SpoIIIAA ncharacterize 97.6 0.00023 5E-09 68.8 8.3 85 239-328 138-243 (308)
296 PRK12724 flagellar biosynthesi 97.6 0.017 3.7E-07 61.6 23.0 111 238-360 223-351 (432)
297 TIGR00959 ffh signal recogniti 97.6 0.0023 5E-08 68.8 16.7 75 237-314 98-195 (428)
298 PF10923 DUF2791: P-loop Domai 97.6 0.0047 1E-07 65.8 18.7 136 293-446 229-377 (416)
299 COG2804 PulE Type II secretory 97.6 0.00023 5.1E-09 76.3 8.9 87 237-331 256-353 (500)
300 PF13207 AAA_17: AAA domain; P 97.6 7.1E-05 1.5E-09 65.7 4.1 25 240-264 1-25 (121)
301 PRK08118 topology modulation p 97.6 0.00047 1E-08 64.6 9.7 31 240-276 3-33 (167)
302 PF13604 AAA_30: AAA domain; P 97.6 0.00024 5.1E-09 68.5 7.9 85 239-327 19-119 (196)
303 PRK07261 topology modulation p 97.5 0.00058 1.3E-08 64.3 10.3 31 240-276 2-32 (171)
304 COG1126 GlnQ ABC-type polar am 97.5 0.00023 5E-09 68.4 7.4 23 239-261 29-51 (240)
305 PF03266 NTPase_1: NTPase; In 97.5 0.00014 2.9E-09 68.4 5.8 24 240-263 1-24 (168)
306 PLN03210 Resistant to P. syrin 97.5 0.0023 4.9E-08 77.6 17.8 50 206-264 184-233 (1153)
307 PF13191 AAA_16: AAA ATPase do 97.5 0.0001 2.2E-09 69.4 5.0 64 207-281 1-64 (185)
308 PRK13695 putative NTPase; Prov 97.5 0.00055 1.2E-08 64.4 9.7 24 240-263 2-25 (174)
309 KOG1808 AAA ATPase containing 97.5 0.00014 3E-09 88.2 6.9 79 239-328 441-534 (1856)
310 TIGR00554 panK_bact pantothena 97.5 0.00044 9.6E-09 70.5 9.4 98 157-282 8-105 (290)
311 TIGR00064 ftsY signal recognit 97.5 0.0039 8.5E-08 63.2 16.1 76 237-315 71-168 (272)
312 PRK10416 signal recognition pa 97.5 0.0062 1.3E-07 63.1 17.8 42 237-281 113-154 (318)
313 PF05970 PIF1: PIF1-like helic 97.5 0.00041 8.9E-09 73.3 8.9 121 211-352 6-149 (364)
314 TIGR01618 phage_P_loop phage n 97.4 0.00014 3E-09 71.1 4.8 72 237-317 11-97 (220)
315 PRK12727 flagellar biosynthesi 97.4 0.014 3.1E-07 63.8 20.3 77 239-316 351-443 (559)
316 cd03247 ABCC_cytochrome_bd The 97.4 0.0008 1.7E-08 63.6 9.6 84 239-327 29-143 (178)
317 PRK06995 flhF flagellar biosyn 97.4 0.0076 1.7E-07 65.6 18.2 79 237-316 255-349 (484)
318 KOG0482 DNA replication licens 97.4 0.00043 9.3E-09 73.5 8.0 115 197-328 333-466 (721)
319 TIGR02533 type_II_gspE general 97.4 0.00037 7.9E-09 76.3 7.9 87 237-331 240-337 (486)
320 TIGR03499 FlhF flagellar biosy 97.4 0.00085 1.8E-08 68.4 9.9 44 237-281 193-236 (282)
321 cd03228 ABCC_MRP_Like The MRP 97.4 0.0014 2.9E-08 61.6 10.6 84 239-327 29-141 (171)
322 PRK12726 flagellar biosynthesi 97.4 0.016 3.5E-07 61.0 19.2 84 238-325 206-311 (407)
323 PRK10436 hypothetical protein; 97.4 0.00049 1.1E-08 74.6 8.3 87 237-331 216-313 (462)
324 PRK06696 uridine kinase; Valid 97.4 0.00038 8.2E-09 68.4 6.8 60 212-282 4-63 (223)
325 COG1936 Predicted nucleotide k 97.4 0.0012 2.6E-08 61.3 9.4 22 240-262 2-23 (180)
326 COG1116 TauB ABC-type nitrate/ 97.3 0.0017 3.6E-08 64.0 10.9 26 239-264 30-55 (248)
327 TIGR02524 dot_icm_DotB Dot/Icm 97.3 0.00063 1.4E-08 71.6 8.5 88 239-331 135-238 (358)
328 KOG0481 DNA replication licens 97.3 0.00054 1.2E-08 72.9 7.8 184 199-403 324-519 (729)
329 TIGR02858 spore_III_AA stage I 97.3 0.0013 2.7E-08 66.6 10.3 26 239-264 112-137 (270)
330 PRK08154 anaerobic benzoate ca 97.3 0.001 2.2E-08 68.8 9.5 106 158-276 57-165 (309)
331 TIGR02538 type_IV_pilB type IV 97.3 0.00052 1.1E-08 76.7 7.8 87 237-331 314-411 (564)
332 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00097 2.1E-08 63.0 8.6 34 240-281 1-34 (183)
333 cd03216 ABC_Carb_Monos_I This 97.3 0.0013 2.8E-08 61.3 9.1 84 239-327 27-127 (163)
334 PF00437 T2SE: Type II/IV secr 97.3 0.0006 1.3E-08 68.9 7.2 83 239-328 128-221 (270)
335 TIGR01448 recD_rel helicase, p 97.2 0.0035 7.5E-08 72.1 13.6 87 239-328 339-443 (720)
336 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.0024 5.1E-08 58.9 10.1 84 239-327 26-125 (157)
337 PRK06067 flagellar accessory p 97.2 0.0028 6E-08 62.6 11.1 24 239-262 26-49 (234)
338 PRK00131 aroK shikimate kinase 97.2 0.00034 7.4E-09 65.2 4.3 27 238-264 4-30 (175)
339 PF10443 RNA12: RNA12 protein; 97.2 0.0029 6.4E-08 67.0 11.5 39 239-285 18-58 (431)
340 TIGR02525 plasmid_TraJ plasmid 97.2 0.0013 2.7E-08 69.5 8.7 86 239-328 150-250 (372)
341 cd03214 ABC_Iron-Siderophores_ 97.2 0.0023 5E-08 60.5 9.8 84 239-327 26-142 (180)
342 cd03246 ABCC_Protease_Secretio 97.2 0.0038 8.2E-08 58.7 11.1 84 239-327 29-141 (173)
343 PRK05439 pantothenate kinase; 97.2 0.00071 1.5E-08 69.5 6.3 97 157-281 32-128 (311)
344 PF13671 AAA_33: AAA domain; P 97.1 0.00032 7E-09 63.2 3.1 25 240-264 1-25 (143)
345 PF06414 Zeta_toxin: Zeta toxi 97.1 0.0032 7E-08 60.6 10.1 44 235-284 12-56 (199)
346 COG2766 PrkA Putative Ser prot 97.1 0.0016 3.4E-08 70.3 8.4 200 206-438 76-367 (649)
347 COG4178 ABC-type uncharacteriz 97.1 0.0033 7.2E-08 69.5 11.2 48 292-353 525-573 (604)
348 cd03115 SRP The signal recogni 97.1 0.0035 7.6E-08 58.7 10.0 39 240-281 2-40 (173)
349 cd03223 ABCD_peroxisomal_ALDP 97.1 0.0034 7.3E-08 58.7 9.7 84 239-327 28-136 (166)
350 cd03238 ABC_UvrA The excision 97.1 0.0027 5.8E-08 60.1 9.0 88 239-327 22-134 (176)
351 COG1419 FlhF Flagellar GTP-bin 97.1 0.0016 3.4E-08 68.5 8.0 89 238-328 203-310 (407)
352 COG1117 PstB ABC-type phosphat 97.1 0.0019 4.1E-08 62.1 7.7 43 207-262 15-57 (253)
353 PRK11176 lipid transporter ATP 97.1 0.0031 6.8E-08 70.8 11.0 26 239-264 370-395 (582)
354 COG3842 PotA ABC-type spermidi 97.1 0.00046 9.9E-09 71.8 3.9 26 239-264 32-57 (352)
355 PRK14721 flhF flagellar biosyn 97.1 0.051 1.1E-06 58.3 19.4 112 237-360 190-318 (420)
356 PRK04220 2-phosphoglycerate ki 97.1 0.00078 1.7E-08 68.7 5.4 29 236-264 90-118 (301)
357 cd01124 KaiC KaiC is a circadi 97.0 0.0016 3.4E-08 61.6 7.1 35 240-277 1-35 (187)
358 COG2805 PilT Tfp pilus assembl 97.0 0.0077 1.7E-07 60.8 12.1 88 237-331 123-224 (353)
359 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0061 1.3E-07 55.6 10.7 83 239-326 27-114 (144)
360 PRK06547 hypothetical protein; 97.0 0.00098 2.1E-08 62.8 5.6 28 237-264 14-41 (172)
361 KOG1968 Replication factor C, 97.0 0.0021 4.6E-08 74.2 9.4 179 206-440 320-521 (871)
362 PRK08233 hypothetical protein; 97.0 0.0019 4.2E-08 60.6 7.4 35 239-278 4-38 (182)
363 PF05272 VirE: Virulence-assoc 97.0 0.0031 6.6E-08 60.9 8.8 94 239-353 53-149 (198)
364 COG4555 NatA ABC-type Na+ tran 97.0 0.0052 1.1E-07 58.6 9.9 26 239-264 29-54 (245)
365 COG1124 DppF ABC-type dipeptid 97.0 0.0025 5.4E-08 62.4 8.0 26 239-264 34-59 (252)
366 COG1125 OpuBA ABC-type proline 97.0 0.0045 9.9E-08 61.0 9.8 40 239-282 28-67 (309)
367 cd03229 ABC_Class3 This class 97.0 0.0027 5.9E-08 59.9 8.2 84 239-327 27-145 (178)
368 PF01583 APS_kinase: Adenylyls 97.0 0.0012 2.6E-08 61.0 5.5 87 237-328 1-99 (156)
369 PRK11174 cysteine/glutathione 97.0 0.0041 9E-08 69.9 10.9 24 239-262 377-400 (588)
370 cd01130 VirB11-like_ATPase Typ 97.0 0.003 6.6E-08 60.1 8.4 82 239-328 26-124 (186)
371 PRK13900 type IV secretion sys 97.0 0.0055 1.2E-07 63.9 10.9 82 239-328 161-259 (332)
372 cd03263 ABC_subfamily_A The AB 97.0 0.0038 8.3E-08 60.9 9.3 25 239-263 29-53 (220)
373 cd03225 ABC_cobalt_CbiO_domain 97.0 0.006 1.3E-07 59.1 10.6 25 239-263 28-52 (211)
374 PRK14723 flhF flagellar biosyn 97.0 0.069 1.5E-06 61.1 20.3 86 238-325 185-289 (767)
375 cd03230 ABC_DR_subfamily_A Thi 97.0 0.0033 7.1E-08 59.1 8.4 84 239-327 27-140 (173)
376 PF14516 AAA_35: AAA-like doma 96.9 0.017 3.6E-07 60.4 14.3 176 210-439 15-228 (331)
377 cd03264 ABC_drug_resistance_li 96.9 0.0043 9.3E-08 60.1 9.2 25 239-263 26-50 (211)
378 PRK15177 Vi polysaccharide exp 96.9 0.0054 1.2E-07 59.8 9.9 26 239-264 14-39 (213)
379 PRK13539 cytochrome c biogenes 96.9 0.0063 1.4E-07 58.9 10.3 25 239-263 29-53 (207)
380 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.0059 1.3E-07 56.6 9.6 26 239-264 3-28 (159)
381 TIGR03375 type_I_sec_LssB type 96.9 0.0051 1.1E-07 70.7 11.2 26 239-264 492-517 (694)
382 COG2274 SunT ABC-type bacterio 96.9 0.0038 8.2E-08 71.2 9.9 26 239-264 500-525 (709)
383 COG1373 Predicted ATPase (AAA+ 96.9 0.0079 1.7E-07 64.3 11.8 121 240-406 39-162 (398)
384 cd00227 CPT Chloramphenicol (C 96.9 0.0007 1.5E-08 63.8 3.4 34 239-278 3-36 (175)
385 PRK03839 putative kinase; Prov 96.9 0.00083 1.8E-08 63.5 3.9 25 240-264 2-26 (180)
386 TIGR02788 VirB11 P-type DNA tr 96.9 0.0061 1.3E-07 62.9 10.6 82 239-328 145-242 (308)
387 PRK13947 shikimate kinase; Pro 96.9 0.00088 1.9E-08 62.6 4.0 31 240-276 3-33 (171)
388 PRK13657 cyclic beta-1,2-gluca 96.9 0.0045 9.7E-08 69.7 10.4 26 239-264 362-387 (588)
389 COG1485 Predicted ATPase [Gene 96.9 0.0084 1.8E-07 61.8 11.2 101 239-361 66-178 (367)
390 COG3839 MalK ABC-type sugar tr 96.9 0.001 2.2E-08 68.9 4.7 26 239-264 30-55 (338)
391 COG1131 CcmA ABC-type multidru 96.9 0.0053 1.1E-07 63.0 9.9 26 239-264 32-57 (293)
392 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.0049 1.1E-07 60.1 9.2 22 239-260 30-51 (213)
393 PLN02200 adenylate kinase fami 96.9 0.0011 2.3E-08 65.8 4.5 36 237-280 42-77 (234)
394 KOG2543 Origin recognition com 96.9 0.021 4.5E-07 59.4 13.7 62 203-278 3-64 (438)
395 cd03222 ABC_RNaseL_inhibitor T 96.9 0.003 6.4E-08 59.9 7.2 82 239-327 26-116 (177)
396 KOG0479 DNA replication licens 96.9 0.0064 1.4E-07 65.9 10.2 179 196-393 291-482 (818)
397 cd00464 SK Shikimate kinase (S 96.9 0.00099 2.1E-08 60.8 3.8 25 240-264 1-25 (154)
398 PRK00625 shikimate kinase; Pro 96.8 0.001 2.2E-08 62.8 4.0 25 240-264 2-26 (173)
399 PF13337 Lon_2: Putative ATP-d 96.8 0.0016 3.4E-08 69.5 5.7 183 166-401 166-355 (457)
400 TIGR02782 TrbB_P P-type conjug 96.8 0.0055 1.2E-07 63.0 9.5 85 239-328 133-228 (299)
401 cd03251 ABCC_MsbA MsbA is an e 96.8 0.0082 1.8E-07 59.1 10.5 25 239-263 29-53 (234)
402 PRK14532 adenylate kinase; Pro 96.8 0.001 2.2E-08 63.4 3.8 34 240-281 2-35 (188)
403 TIGR02868 CydC thiol reductant 96.8 0.0046 1E-07 68.6 9.6 26 239-264 362-387 (529)
404 TIGR02237 recomb_radB DNA repa 96.8 0.0047 1E-07 59.7 8.5 38 239-279 13-50 (209)
405 cd03232 ABC_PDR_domain2 The pl 96.8 0.0071 1.5E-07 57.9 9.6 88 239-327 34-153 (192)
406 KOG0058 Peptide exporter, ABC 96.8 0.0046 1E-07 68.9 9.3 26 239-264 495-520 (716)
407 PRK06762 hypothetical protein; 96.8 0.0014 3E-08 61.0 4.6 27 238-264 2-28 (166)
408 PRK10790 putative multidrug tr 96.8 0.0062 1.3E-07 68.6 10.7 26 239-264 368-393 (592)
409 TIGR01447 recD exodeoxyribonuc 96.8 0.0083 1.8E-07 67.2 11.5 89 239-328 161-286 (586)
410 PF09848 DUF2075: Uncharacteri 96.8 0.0042 9.2E-08 65.3 8.7 23 240-262 3-25 (352)
411 PRK13851 type IV secretion sys 96.8 0.006 1.3E-07 63.8 9.6 82 239-328 163-260 (344)
412 cd02021 GntK Gluconate kinase 96.8 0.0011 2.3E-08 60.7 3.6 23 241-263 2-24 (150)
413 PRK05541 adenylylsulfate kinas 96.8 0.0016 3.5E-08 61.2 4.9 37 237-276 6-42 (176)
414 COG0563 Adk Adenylate kinase a 96.8 0.00092 2E-08 63.4 3.1 32 240-279 2-33 (178)
415 PRK08533 flagellar accessory p 96.8 0.01 2.2E-07 58.6 10.7 36 239-277 25-60 (230)
416 cd00046 DEXDc DEAD-like helica 96.8 0.0077 1.7E-07 52.6 8.9 25 240-264 2-26 (144)
417 PRK13894 conjugal transfer ATP 96.8 0.0056 1.2E-07 63.4 9.0 85 239-328 149-243 (319)
418 PF13479 AAA_24: AAA domain 96.8 0.0033 7.2E-08 61.3 7.0 75 237-322 2-89 (213)
419 PF13238 AAA_18: AAA domain; P 96.8 0.0011 2.4E-08 58.2 3.4 22 241-262 1-22 (129)
420 PF04665 Pox_A32: Poxvirus A32 96.8 0.024 5.2E-07 56.2 12.9 131 237-409 12-168 (241)
421 TIGR02203 MsbA_lipidA lipid A 96.8 0.0075 1.6E-07 67.6 10.7 26 239-264 359-384 (571)
422 PRK13537 nodulation ABC transp 96.8 0.0059 1.3E-07 63.0 9.1 26 239-264 34-59 (306)
423 TIGR01313 therm_gnt_kin carboh 96.8 0.001 2.2E-08 61.7 3.2 24 241-264 1-24 (163)
424 TIGR02857 CydD thiol reductant 96.8 0.0072 1.6E-07 67.1 10.5 26 239-264 349-374 (529)
425 PRK13764 ATPase; Provisional 96.7 0.0066 1.4E-07 67.7 9.9 78 239-322 258-343 (602)
426 TIGR03864 PQQ_ABC_ATP ABC tran 96.7 0.0081 1.8E-07 59.3 9.7 25 239-263 28-52 (236)
427 PRK13833 conjugal transfer pro 96.7 0.005 1.1E-07 63.8 8.4 85 239-328 145-239 (323)
428 TIGR03796 NHPM_micro_ABC1 NHPM 96.7 0.008 1.7E-07 69.2 11.0 26 239-264 506-531 (710)
429 TIGR00152 dephospho-CoA kinase 96.7 0.0033 7.2E-08 59.9 6.5 78 241-328 2-101 (188)
430 TIGR01846 type_I_sec_HlyB type 96.7 0.0086 1.9E-07 68.8 11.1 26 239-264 484-509 (694)
431 PRK13541 cytochrome c biogenes 96.7 0.0088 1.9E-07 57.3 9.4 26 239-264 27-52 (195)
432 PRK07667 uridine kinase; Provi 96.7 0.0039 8.4E-08 59.8 6.9 40 239-281 18-57 (193)
433 COG1136 SalX ABC-type antimicr 96.7 0.0092 2E-07 58.4 9.5 26 239-264 32-57 (226)
434 TIGR02204 MsbA_rel ABC transpo 96.7 0.0088 1.9E-07 67.1 10.8 26 239-264 367-392 (576)
435 PRK14531 adenylate kinase; Pro 96.7 0.0015 3.3E-08 62.0 4.0 33 240-280 4-36 (183)
436 KOG0922 DEAH-box RNA helicase 96.7 0.013 2.9E-07 64.5 11.5 51 300-362 162-214 (674)
437 KOG2228 Origin recognition com 96.7 0.022 4.8E-07 58.3 12.3 164 208-411 26-219 (408)
438 TIGR01188 drrA daunorubicin re 96.7 0.0073 1.6E-07 62.1 9.1 26 239-264 20-45 (302)
439 TIGR03522 GldA_ABC_ATP gliding 96.7 0.0078 1.7E-07 61.9 9.3 26 239-264 29-54 (301)
440 cd03301 ABC_MalK_N The N-termi 96.7 0.0052 1.1E-07 59.6 7.6 25 239-263 27-51 (213)
441 cd03252 ABCC_Hemolysin The ABC 96.7 0.015 3.3E-07 57.3 11.0 25 239-263 29-53 (237)
442 PRK06217 hypothetical protein; 96.7 0.0016 3.5E-08 61.8 3.8 25 240-264 3-27 (183)
443 PRK09270 nucleoside triphospha 96.7 0.0035 7.7E-08 61.8 6.3 44 236-282 31-75 (229)
444 PRK13540 cytochrome c biogenes 96.6 0.011 2.3E-07 56.9 9.6 25 239-263 28-52 (200)
445 cd03253 ABCC_ATM1_transporter 96.6 0.013 2.9E-07 57.7 10.4 25 239-263 28-52 (236)
446 COG4619 ABC-type uncharacteriz 96.6 0.0041 8.9E-08 57.7 6.1 26 239-264 30-55 (223)
447 PRK14530 adenylate kinase; Pro 96.6 0.0017 3.6E-08 63.4 3.8 24 240-263 5-28 (215)
448 TIGR03410 urea_trans_UrtE urea 96.6 0.009 1.9E-07 58.7 9.0 25 239-263 27-51 (230)
449 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0081 1.8E-07 59.9 8.8 34 241-277 2-35 (249)
450 cd02020 CMPK Cytidine monophos 96.6 0.0017 3.7E-08 58.7 3.6 25 240-264 1-25 (147)
451 COG1122 CbiO ABC-type cobalt t 96.6 0.0099 2.1E-07 58.9 9.2 26 239-264 31-56 (235)
452 cd02019 NK Nucleoside/nucleoti 96.6 0.0018 3.9E-08 51.3 3.2 22 241-262 2-23 (69)
453 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0014 2.9E-08 62.1 3.0 24 239-262 4-27 (188)
454 PRK13948 shikimate kinase; Pro 96.6 0.0023 5.1E-08 60.8 4.5 34 237-276 9-42 (182)
455 PRK05480 uridine/cytidine kina 96.6 0.0032 7E-08 61.0 5.7 40 237-281 5-44 (209)
456 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0052 1.1E-07 55.3 6.5 42 213-264 6-48 (133)
457 TIGR03797 NHPM_micro_ABC2 NHPM 96.6 0.011 2.4E-07 67.8 10.9 26 239-264 480-505 (686)
458 cd03266 ABC_NatA_sodium_export 96.6 0.011 2.3E-07 57.6 9.3 25 239-263 32-56 (218)
459 cd03215 ABC_Carb_Monos_II This 96.6 0.011 2.5E-07 55.9 9.2 26 239-264 27-52 (182)
460 cd03248 ABCC_TAP TAP, the Tran 96.6 0.021 4.6E-07 55.9 11.4 25 239-263 41-65 (226)
461 cd03259 ABC_Carb_Solutes_like 96.6 0.0068 1.5E-07 58.8 7.8 25 239-263 27-51 (213)
462 PRK13949 shikimate kinase; Pro 96.6 0.0019 4E-08 60.7 3.7 31 240-276 3-33 (169)
463 COG1643 HrpA HrpA-like helicas 96.6 0.0089 1.9E-07 68.9 9.8 60 292-362 149-214 (845)
464 PTZ00088 adenylate kinase 1; P 96.6 0.0023 4.9E-08 63.2 4.4 37 237-281 5-41 (229)
465 PRK00889 adenylylsulfate kinas 96.6 0.0026 5.6E-08 59.8 4.7 38 239-279 5-42 (175)
466 cd03217 ABC_FeS_Assembly ABC-t 96.6 0.012 2.5E-07 56.8 9.3 26 237-262 24-50 (200)
467 PRK05986 cob(I)alamin adenolsy 96.6 0.02 4.3E-07 54.7 10.6 26 239-264 23-48 (191)
468 PRK10789 putative multidrug tr 96.6 0.011 2.5E-07 66.2 10.5 26 239-264 342-367 (569)
469 cd03213 ABCG_EPDR ABCG transpo 96.6 0.011 2.5E-07 56.6 9.1 84 239-328 36-157 (194)
470 PF00519 PPV_E1_C: Papillomavi 96.6 0.0028 6.1E-08 66.0 5.1 140 239-418 263-408 (432)
471 PRK03846 adenylylsulfate kinas 96.6 0.0031 6.7E-08 60.7 5.2 40 235-277 21-60 (198)
472 PRK13648 cbiO cobalt transport 96.6 0.017 3.6E-07 58.4 10.7 25 239-263 36-60 (269)
473 PRK01184 hypothetical protein; 96.6 0.065 1.4E-06 50.6 14.2 22 240-262 3-24 (184)
474 cd03369 ABCC_NFT1 Domain 2 of 96.6 0.022 4.7E-07 55.0 11.0 25 239-263 35-59 (207)
475 cd03268 ABC_BcrA_bacitracin_re 96.6 0.012 2.7E-07 56.7 9.4 25 239-263 27-51 (208)
476 TIGR01193 bacteriocin_ABC ABC- 96.5 0.012 2.7E-07 67.7 10.8 26 239-264 501-526 (708)
477 PF01443 Viral_helicase1: Vira 96.5 0.0037 8E-08 61.3 5.6 87 241-328 1-89 (234)
478 KOG4658 Apoptotic ATPase [Sign 96.5 0.53 1.2E-05 55.4 24.1 44 209-263 161-204 (889)
479 TIGR02012 tigrfam_recA protein 96.5 0.01 2.2E-07 61.4 9.0 72 239-314 56-146 (321)
480 cd03233 ABC_PDR_domain1 The pl 96.5 0.0087 1.9E-07 57.7 8.1 25 239-263 34-58 (202)
481 PRK05800 cobU adenosylcobinami 96.5 0.0073 1.6E-07 56.8 7.3 34 240-279 3-36 (170)
482 TIGR01192 chvA glucan exporter 96.5 0.012 2.7E-07 66.1 10.5 26 239-264 362-387 (585)
483 cd01128 rho_factor Transcripti 96.5 0.0072 1.6E-07 60.4 7.6 26 239-264 17-42 (249)
484 cd01428 ADK Adenylate kinase ( 96.5 0.0021 4.6E-08 61.1 3.8 32 241-280 2-33 (194)
485 PRK06731 flhF flagellar biosyn 96.5 0.038 8.3E-07 55.8 12.9 84 239-326 76-181 (270)
486 PF02562 PhoH: PhoH-like prote 96.5 0.01 2.2E-07 57.4 8.1 25 240-264 21-45 (205)
487 PRK13538 cytochrome c biogenes 96.5 0.014 3E-07 56.4 9.2 26 239-264 28-53 (204)
488 smart00534 MUTSac ATPase domai 96.5 0.016 3.5E-07 55.1 9.5 76 240-316 1-94 (185)
489 PF06745 KaiC: KaiC; InterPro 96.5 0.0042 9.1E-08 60.9 5.6 24 239-262 20-43 (226)
490 PRK10771 thiQ thiamine transpo 96.5 0.0097 2.1E-07 58.6 8.2 25 239-263 26-50 (232)
491 PRK09376 rho transcription ter 96.5 0.0052 1.1E-07 64.7 6.5 26 239-264 170-195 (416)
492 PF01926 MMR_HSR1: 50S ribosom 96.5 0.01 2.2E-07 51.6 7.4 87 241-328 2-107 (116)
493 COG0529 CysC Adenylylsulfate k 96.5 0.004 8.7E-08 58.1 4.9 41 237-280 22-62 (197)
494 PRK08485 DNA polymerase III su 96.5 0.02 4.4E-07 54.7 9.7 87 303-438 56-155 (206)
495 cd03250 ABCC_MRP_domain1 Domai 96.5 0.027 5.9E-07 54.2 11.0 26 239-264 32-57 (204)
496 COG4608 AppF ABC-type oligopep 96.4 0.012 2.5E-07 58.9 8.4 84 239-327 40-154 (268)
497 COG0703 AroK Shikimate kinase 96.4 0.0023 4.9E-08 59.9 3.2 32 239-276 3-34 (172)
498 PRK05057 aroK shikimate kinase 96.4 0.0032 7E-08 59.3 4.3 32 239-276 5-36 (172)
499 PF00270 DEAD: DEAD/DEAH box h 96.4 0.031 6.7E-07 51.5 10.9 22 239-260 15-36 (169)
500 PRK14738 gmk guanylate kinase; 96.4 0.0028 6.1E-08 61.5 4.0 30 232-261 7-36 (206)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-93 Score=781.42 Aligned_cols=413 Identities=29% Similarity=0.455 Sum_probs=374.7
Q ss_pred hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHH
Q 036633 5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYF 81 (550)
Q Consensus 5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~ 81 (550)
..|+.||+|++++||.||||+|+|+||++||.||+| |||+||||||||||||| +++++.. .| .+++.++++
T Consensus 336 e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~R--YI~dR~LPDKAIDLiDeA~a~~~l~~~-~p---~~l~~~~~~ 409 (786)
T COG0542 336 EDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDR--YIPDRFLPDKAIDLLDEAGARVRLEID-KP---EELDELERE 409 (786)
T ss_pred HHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHh--hcccCCCCchHHHHHHHHHHHHHhccc-CC---cchhHHHHH
Confidence 469999999999999999999999999999999999 99999999999999999 7888888 99 999999999
Q ss_pred HHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccHHHHHHHHHHHHhh
Q 036633 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHG 161 (550)
Q Consensus 82 ~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (550)
+.+++.|+.++.++ .|.. ++.+ ...+..++. .....+++++..
T Consensus 410 ~~~l~~e~~~~~~e-~~~~---------~k~~---------------~~~~~~~~~------------~~~~~~~~~~~~ 452 (786)
T COG0542 410 LAQLEIEKEALERE-QDEK---------EKKL---------------IDEIIKLKE------------GRIPELEKELEA 452 (786)
T ss_pred HHHHHHHHHHHhhh-hhHH---------HHHH---------------HHHHHHHhh------------hhhhhHHHHHhh
Confidence 99999999999988 3300 1111 111111110 011123333333
Q ss_pred hhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-ee
Q 036633 162 KFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GL 240 (550)
Q Consensus 162 ~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~ 240 (550)
+ ||.++|+++|++|||||+.++.+++.+++.++++.|.++|+||++|+..|+++++++ |+|+.+|++| ++
T Consensus 453 -~-----v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra---RaGL~dp~rPigs 523 (786)
T COG0542 453 -E-----VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA---RAGLGDPNRPIGS 523 (786)
T ss_pred -c-----cCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH---hcCCCCCCCCceE
Confidence 2 999999999999999999999999999999999999999999999999999999999 9999999999 99
Q ss_pred EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------HHHHHHHhCCCCeEEec
Q 036633 241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------SLAALVKKRPYSVVLFD 308 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------~lt~al~~~p~~VlllD 308 (550)
|||+||||||||+||++||+.||+ ++.++++||||+|+++|++|+|+| .||+++|++||||||||
T Consensus 524 FlF~GPTGVGKTELAkaLA~~Lfg---~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlD 600 (786)
T COG0542 524 FLFLGPTGVGKTELAKALAEALFG---DEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLD 600 (786)
T ss_pred EEeeCCCcccHHHHHHHHHHHhcC---CCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEec
Confidence 999999999999999999999999 999999999999999999999999 99999999999999999
Q ss_pred cccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhhhh-------hhHhhHHHHhccCCCh
Q 036633 309 KIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVMLT-------ATYGRVNEVTGSLFKP 380 (550)
Q Consensus 309 EIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~-------~~~~~~~~~l~~~f~p 380 (550)
|||||||+|+|+|||+||+| + +||+ |++|||+|||||||||+|+..+.....+ ...+.+...++++|+|
T Consensus 601 EIEKAHpdV~nilLQVlDdG--r-LTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~P 677 (786)
T COG0542 601 EIEKAHPDVFNLLLQVLDDG--R-LTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRP 677 (786)
T ss_pred hhhhcCHHHHHHHHHHhcCC--e-eecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCH
Confidence 99999999999999999999 9 9999 9999999999999999999998776532 1357788899999999
Q ss_pred hhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc--
Q 036633 381 SLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ-- 457 (550)
Q Consensus 381 ~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~-- 457 (550)
+|+||+|.+|+|+ ||+.+++.+|+..+|.++..++.++++ ++.+++++.+||++.|| |.||| |+|+|+|++
T Consensus 678 EFLNRid~II~F~---~L~~~~l~~Iv~~~L~~l~~~L~~~~i-~l~~s~~a~~~l~~~gyd~~~GA--RpL~R~Iq~~i 751 (786)
T COG0542 678 EFLNRIDEIIPFN---PLSKEVLERIVDLQLNRLAKRLAERGI-TLELSDEAKDFLAEKGYDPEYGA--RPLRRAIQQEI 751 (786)
T ss_pred HHHhhcccEEecc---CCCHHHHHHHHHHHHHHHHHHHHhCCc-eEEECHHHHHHHHHhccCCCcCc--hHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999 99999999999999999 99999 999999999
Q ss_pred -hhhHHHHHhhhhcCCCccccccch
Q 036633 458 -RPSADHVIDKFLRDAGYNHQSKEE 481 (550)
Q Consensus 458 -~~la~~~l~~~~~~~~~~~i~~~~ 481 (550)
++||+.+|.|.+.++..+.+++..
T Consensus 752 ~~~La~~iL~g~~~~~~~v~v~~~~ 776 (786)
T COG0542 752 EDPLADEILFGKIEDGGTVKVDVDD 776 (786)
T ss_pred HHHHHHHHHhcccCCCcEEEEEecC
Confidence 999999999999988888777664
No 2
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=2.2e-72 Score=641.33 Aligned_cols=453 Identities=21% Similarity=0.338 Sum_probs=385.8
Q ss_pred hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHH
Q 036633 5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYF 81 (550)
Q Consensus 5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~ 81 (550)
..|..||+++++.||.||+|.|+|+||.+||+||+| ||++|+||||||||||+ +++++.++.| ..++.++++
T Consensus 353 ~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r--yi~~r~LPDKAIdlldea~a~~~~~~~~~p---~~~~~~~~~ 427 (852)
T TIGR03345 353 ETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR--YIPGRQLPDKAVSLLDTACARVALSQNATP---AALEDLRRR 427 (852)
T ss_pred HHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc--ccccccCccHHHHHHHHHHHHHHHhccCCc---hhHHHHHHH
Confidence 468899999999999999999999999999999999 99999999999999999 6788889999 999999999
Q ss_pred HHHHHHHHHHHhhccC-CchhhhhhHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHhh----hhcc-HHH
Q 036633 82 LRRAVVEYEQLVKEDT-DHSSRSFWLRQIDN---ELKDAFFELVSFVKL--RMQVEYDDFVSCVHDAK----RVKD-YSK 150 (550)
Q Consensus 82 ~~~~~~e~~~~~~~~~-d~~~~~~~~~~~~~---~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~----~~~~-~~~ 150 (550)
+.+++.++..+.++.. +.....+ ..++++ ++++++..+.+.|+. .+..++...+.+..... ...+ ...
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (852)
T TIGR03345 428 IAALELELDALEREAALGADHDER-LAELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRA 506 (852)
T ss_pred HHHHHHHHHHHhhhhccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHH
Confidence 9999999998876521 1111112 333333 447788889999984 33333333332221110 0000 001
Q ss_pred HHHHHHHHHhhhhcC----CCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcch
Q 036633 151 ILDQIDARVHGKFKE----KLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPK 226 (550)
Q Consensus 151 ~~~~~~~~~~~~~~~----~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~ 226 (550)
....+++++..++.. ...|+.++|++||++|||||+.++..++.+++.+|++.|+++|+||++|++.|+.++.++
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~- 585 (852)
T TIGR03345 507 QLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA- 585 (852)
T ss_pred HHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHH-
Confidence 112344455444432 467999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------HH
Q 036633 227 AAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------SL 293 (550)
Q Consensus 227 ~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------~l 293 (550)
++|+.+|++| ++|||+||||||||++|++||+.+|+ +..+++++||++|++.|++++|+| .|
T Consensus 586 --~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~---~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L 660 (852)
T TIGR03345 586 --RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG---GEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVL 660 (852)
T ss_pred --hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC---CCcceEEEeHHHhhhhhhhccccCCCCCcccccccchH
Confidence 9999999999 99999999999999999999999998 788999999999999999999987 68
Q ss_pred HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhhhhh-------
Q 036633 294 AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVMLTA------- 365 (550)
Q Consensus 294 t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~~------- 365 (550)
+++++++|++||+||||||+||++++.|++++++| + ++|+ |+.|||+|++||||||.|.+.+.....+.
T Consensus 661 ~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g--~-l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~ 737 (852)
T TIGR03345 661 TEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKG--V-MEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPE 737 (852)
T ss_pred HHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcc--e-eecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchH
Confidence 99999999999999999999999999999999999 8 9999 99999999999999999998887644221
Q ss_pred -hHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC-CCccccCCHHHHHHHHhcCc-c
Q 036633 366 -TYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS-KAVIVCPSTSALVHIASNAA-R 442 (550)
Q Consensus 366 -~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~-~~~~l~~~~~a~~~L~~~~~-~ 442 (550)
....+.+.+.++|+|+|++||+ +|+|. ||+.+++.+|+...+.++..++..+ |+ .+.++++++++|++.+| +
T Consensus 738 ~~~~~~~~~~~~~f~PEflnRi~-iI~F~---pLs~e~l~~Iv~~~L~~l~~rl~~~~gi-~l~i~d~a~~~La~~g~~~ 812 (852)
T TIGR03345 738 ALLEALRPELLKVFKPAFLGRMT-VIPYL---PLDDDVLAAIVRLKLDRIARRLKENHGA-ELVYSEALVEHIVARCTEV 812 (852)
T ss_pred HHHHHHHHHHHHhccHHHhccee-EEEeC---CCCHHHHHHHHHHHHHHHHHHHHHhcCc-eEEECHHHHHHHHHHcCCC
Confidence 1356778889999999999996 99999 9999999999999999998888765 88 99999999999999999 9
Q ss_pred cCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCcccccc
Q 036633 443 KYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYNHQSK 479 (550)
Q Consensus 443 ~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~ 479 (550)
.+|| |+|+++|++ +|||..++.+........+|++
T Consensus 813 ~~GA--R~L~r~Ie~~i~~~la~~~l~~~~~~~~~~~~~~ 850 (852)
T TIGR03345 813 ESGA--RNIDAILNQTLLPELSRQILERLAAGEPIERIHL 850 (852)
T ss_pred CCCh--HHHHHHHHHHHHHHHHHHHHhChhcCCCeeEEEE
Confidence 9999 999999999 9999999999887766555543
No 3
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=7.5e-70 Score=624.66 Aligned_cols=454 Identities=30% Similarity=0.442 Sum_probs=395.8
Q ss_pred hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHH
Q 036633 5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYF 81 (550)
Q Consensus 5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~ 81 (550)
..+..||++++++||.||+|.|+|+||.+||.||+| ||++|+||||||||||+ ++++...+.| +.++.++++
T Consensus 339 ~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~--yi~~r~lPdkAidlld~a~a~~~~~~~~~~---~~~~~~~~~ 413 (852)
T TIGR03346 339 EDTISILRGLKERYEVHHGVRITDPAIVAAATLSHR--YITDRFLPDKAIDLIDEAAARIRMEIDSKP---EELDELDRR 413 (852)
T ss_pred HHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccc--cccccCCchHHHHHHHHHHHHHHhhccCCc---hhHHHHHHH
Confidence 568899999999999999999999999999999999 99999999999999999 6788888999 999999999
Q ss_pred HHHHHHHHHHHhhccCCchhhhhhHHHHHHHH---HHHHHHHHHHHHH--HH-------HHHHHHHHHhHHHhhhhccHH
Q 036633 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNEL---KDAFFELVSFVKL--RM-------QVEYDDFVSCVHDAKRVKDYS 149 (550)
Q Consensus 82 ~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~l~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~ 149 (550)
+.+++.|++++.++ .+.....+ .+++++++ +.++..+...|.. .. ++++...+.++..+.+.+++.
T Consensus 414 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (852)
T TIGR03346 414 IIQLEIEREALKKE-KDEASKER-LEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLA 491 (852)
T ss_pred HHHHHHHHHHHHhc-chhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 99999999999776 44444445 55555444 7788889999973 22 233333333444455555555
Q ss_pred HHHH-------HHHHHHhhhhc----------CCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcH
Q 036633 150 KILD-------QIDARVHGKFK----------EKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQN 212 (550)
Q Consensus 150 ~~~~-------~~~~~~~~~~~----------~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~ 212 (550)
++.+ .+++.+..++. ....|+.++|+.|+++|||||+.++..++.+++.++++.|.++|+||+
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~ 571 (852)
T TIGR03346 492 KAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQD 571 (852)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCCh
Confidence 5432 23333432221 136799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh
Q 036633 213 DAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291 (550)
Q Consensus 213 ~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG 291 (550)
.|++.|..++.+. ++|+.+|++| ++|||+||||||||++|++||+.+++ +..+++++||++|++.+.+++++|
T Consensus 572 ~av~~v~~~i~~~---~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~---~~~~~i~~d~s~~~~~~~~~~l~g 645 (852)
T TIGR03346 572 EAVEAVSDAIRRS---RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD---DEDAMVRIDMSEYMEKHSVARLIG 645 (852)
T ss_pred HHHHHHHHHHHHH---hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC---CCCcEEEEechhhcccchHHHhcC
Confidence 9999999999999 9999999999 99999999999999999999999999 888999999999999999998875
Q ss_pred ------------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHH
Q 036633 292 ------------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQV 358 (550)
Q Consensus 292 ------------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~ 358 (550)
.|+++++.+|++|||||||||+||++++.|+++|++| + ++|+ |+.+||+|++||||||.|++.+
T Consensus 646 ~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g--~-l~d~~g~~vd~rn~iiI~TSn~g~~~~ 722 (852)
T TIGR03346 646 APPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDG--R-LTDGQGRTVDFRNTVIIMTSNLGSQFI 722 (852)
T ss_pred CCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcC--c-eecCCCeEEecCCcEEEEeCCcchHhH
Confidence 7999999999999999999999999999999999999 8 9999 9999999999999999999877
Q ss_pred HHhhhhh----hHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHH
Q 036633 359 YEVMLTA----TYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALV 434 (550)
Q Consensus 359 ~~~~~~~----~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~ 434 (550)
....... ....+.+.+.+.|+|+|++|||.+++|. ||+.+++..|+...+..+.+++..+|+ .+.+++++++
T Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~---PL~~e~l~~I~~l~L~~l~~~l~~~~~-~l~i~~~a~~ 798 (852)
T TIGR03346 723 QELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFH---PLGREQIARIVEIQLGRLRKRLAERKI-TLELSDAALD 798 (852)
T ss_pred hhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecC---CcCHHHHHHHHHHHHHHHHHHHHHCCC-eecCCHHHHH
Confidence 6543221 1345667788999999999999999999 999999999999999999999888888 8999999999
Q ss_pred HHHhcCc-ccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCccccccc
Q 036633 435 HIASNAA-RKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYNHQSKE 480 (550)
Q Consensus 435 ~L~~~~~-~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~ 480 (550)
+|++++| +.+|+ |+|+++|++ +||++.++.|++.++..+.|++.
T Consensus 799 ~L~~~~~~~~~ga--R~L~~~i~~~i~~~l~~~~l~~~~~~~~~~~~~~~ 846 (852)
T TIGR03346 799 FLAEAGYDPVYGA--RPLKRAIQREIENPLAKKILAGEVADGDTIVVDVE 846 (852)
T ss_pred HHHHhCCCCCCCc--hhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEee
Confidence 9999999 88999 999999999 99999999999999988888764
No 4
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=7.8e-70 Score=622.18 Aligned_cols=454 Identities=28% Similarity=0.444 Sum_probs=401.4
Q ss_pred hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHH
Q 036633 5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYF 81 (550)
Q Consensus 5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~ 81 (550)
..|..||++++++||.||+|.|+|+|+.+||.||+| ||++|+|||||||++|+ .++++..++| +.|+++++.
T Consensus 344 ~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~r--y~~~~~~pdkAi~LiD~aaa~~rl~~~~kp---~~L~rLer~ 418 (857)
T PRK10865 344 EDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR--YIADRQLPDKAIDLIDEAASSIRMQIDSKP---EELDRLDRR 418 (857)
T ss_pred HHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhc--cccCCCCChHHHHHHHHHhcccccccccCh---HHHHHHHHH
Confidence 468889999999999999999999999999999999 99999999999999999 7788889999 999999999
Q ss_pred HHHHHHHHHHHhhccCCchhhhhhHHHHHHHH---HHHHHHHHHHHHH---------HHHHHHHHHHHhHHHhhhhccHH
Q 036633 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNEL---KDAFFELVSFVKL---------RMQVEYDDFVSCVHDAKRVKDYS 149 (550)
Q Consensus 82 ~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 149 (550)
+..++.|++.+.++ .+..+..+ ++++++++ +.++..+.++|+. ..+.++++++.+++.+.+.+++.
T Consensus 419 l~~L~~E~e~l~~e-~~~~~~~~-~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~ 496 (857)
T PRK10865 419 IIQLKLEQQALMKE-SDEASKKR-LDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLA 496 (857)
T ss_pred HHHHHHHHHHHHhh-hhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999877 44455555 66666665 7778889999983 23345555566666777777766
Q ss_pred HHHH-------HHHHHHhhhhcC--------CCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHH
Q 036633 150 KILD-------QIDARVHGKFKE--------KLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDA 214 (550)
Q Consensus 150 ~~~~-------~~~~~~~~~~~~--------~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~a 214 (550)
.+.+ .+++++..++.. ...|+.++|++||++|||||++++..++.+++.+++..|.++|+||+.|
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~a 576 (857)
T PRK10865 497 RMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEA 576 (857)
T ss_pred hHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHH
Confidence 5544 344444433211 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh--
Q 036633 215 IDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-- 291 (550)
Q Consensus 215 i~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-- 291 (550)
++.|..++.+. ++|+.+|++| ++++|+||||||||++|++||+.+++ +..+++++||++|.+.+.+++++|
T Consensus 577 i~~l~~~i~~~---~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~---~~~~~i~id~se~~~~~~~~~LiG~~ 650 (857)
T PRK10865 577 VEAVSNAIRRS---RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD---SDDAMVRIDMSEFMEKHSVSRLVGAP 650 (857)
T ss_pred HHHHHHHHHHH---HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc---CCCcEEEEEhHHhhhhhhHHHHhCCC
Confidence 99999999999 9999999999 99999999999999999999999998 778999999999999999998885
Q ss_pred ----------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHH
Q 036633 292 ----------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 292 ----------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
.++++++.+|++||+||||+++||++++.|+++|++| + ++|+ |+++||+|++||||||.|++.+..
T Consensus 651 pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g--~-l~d~~gr~vd~rn~iiI~TSN~g~~~~~~ 727 (857)
T PRK10865 651 PGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDG--R-LTDGQGRTVDFRNTVVIMTSNLGSDLIQE 727 (857)
T ss_pred CcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhC--c-eecCCceEEeecccEEEEeCCcchHHHHH
Confidence 5899999999999999999999999999999999999 8 9999 999999999999999999887655
Q ss_pred hhhhhh----HhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHH
Q 036633 361 VMLTAT----YGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI 436 (550)
Q Consensus 361 ~~~~~~----~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L 436 (550)
..+... ...+...+.+.|+|+|++|+|.+|+|. ||+.+++..|+..++.++..++..+|+ .+.++++++++|
T Consensus 728 ~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~---PL~~edl~~Iv~~~L~~l~~rl~~~gi-~l~is~~al~~L 803 (857)
T PRK10865 728 RFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFH---PLGEQHIASIAQIQLQRLYKRLEERGY-EIHISDEALKLL 803 (857)
T ss_pred hccccchHHHHHHHHHHHcccccHHHHHhCCeeEecC---CCCHHHHHHHHHHHHHHHHHHHHhCCC-cCcCCHHHHHHH
Confidence 332211 344566788999999999999999999 999999999999999999888877888 899999999999
Q ss_pred HhcCc-ccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCccccccc
Q 036633 437 ASNAA-RKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYNHQSKE 480 (550)
Q Consensus 437 ~~~~~-~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~ 480 (550)
+.++| +.+|| |+|+|+|++ +|||..++.|.+.+++.+.+++.
T Consensus 804 ~~~gy~~~~GA--RpL~r~I~~~i~~~la~~iL~g~~~~~~~~~~~~~ 849 (857)
T PRK10865 804 SENGYDPVYGA--RPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVN 849 (857)
T ss_pred HHcCCCccCCh--HHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEEE
Confidence 99999 99999 999999999 99999999999999988888764
No 5
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=3.3e-69 Score=617.82 Aligned_cols=426 Identities=27% Similarity=0.394 Sum_probs=374.4
Q ss_pred hhhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHH
Q 036633 4 HKFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKY 80 (550)
Q Consensus 4 ~~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~ 80 (550)
...+..||++++++||+||+|.|+|+|+.+++.||+| ||++|+||||||||||+ ++++...+.| ..++.+++
T Consensus 343 ~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~--yi~~r~lPdkaidlld~a~a~~~~~~~~~~---~~~~~~~~ 417 (821)
T CHL00095 343 VEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ--YIADRFLPDKAIDLLDEAGSRVRLINSRLP---PAARELDK 417 (821)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc--cCccccCchHHHHHHHHHHHHHHhhccCCc---hhHHHHHH
Confidence 3568899999999999999999999999999999999 99999999999999999 6778778899 99999999
Q ss_pred HHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccHHHHHHHHHHHHh
Q 036633 81 FLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVH 160 (550)
Q Consensus 81 ~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (550)
++.+++.+++++.++ .+...... +..-..++++++..+...|... .
T Consensus 418 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------------~---- 463 (821)
T CHL00095 418 ELREILKDKDEAIRE-QDFETAKQ-LRDREMEVRAQIAAIIQSKKTE----------------------------E---- 463 (821)
T ss_pred HHHHHHHHHHHHHhC-cchHHHHH-HHHHHHHHHHHHHHHHHHHHhh----------------------------h----
Confidence 999999999988776 33222111 2222223344455555555420 0
Q ss_pred hhhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-e
Q 036633 161 GKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-G 239 (550)
Q Consensus 161 ~~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~ 239 (550)
.-......||.++|++++++|||||+.++..++.+++.++++.|.++|+||++|+..|+.++.+. ++|+.+|++| +
T Consensus 464 ~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~---~~gl~~~~~p~~ 540 (821)
T CHL00095 464 EKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA---RVGLKNPNRPIA 540 (821)
T ss_pred cccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH---hhcccCCCCCce
Confidence 00112467999999999999999999999999999999999999999999999999999999999 9999999999 9
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------HHHHHHHhCCCCeEEe
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------SLAALVKKRPYSVVLF 307 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------~lt~al~~~p~~Vlll 307 (550)
+|||+||||||||++|++||+.+|+ +..+++++||++|++.|++++++| .|+++++.+|++||+|
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~---~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~Vvll 617 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFG---SEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLF 617 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcC---CccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEE
Confidence 9999999999999999999999999 788999999999999999999886 6999999999999999
Q ss_pred ccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhh-----h-------hhh----HhhH
Q 036633 308 DKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVM-----L-------TAT----YGRV 370 (550)
Q Consensus 308 DEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~-----~-------~~~----~~~~ 370 (550)
|||||+||++++.|+++||+| + ++|+ |+.+||+|++||||||.|+..+.... . ... ...+
T Consensus 618 Deieka~~~v~~~Llq~le~g--~-~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~ 694 (821)
T CHL00095 618 DEIEKAHPDIFNLLLQILDDG--R-LTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLV 694 (821)
T ss_pred CChhhCCHHHHHHHHHHhccC--c-eecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHH
Confidence 999999999999999999999 8 9999 99999999999999999998765321 0 001 2445
Q ss_pred HHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCccc
Q 036633 371 NEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGE 449 (550)
Q Consensus 371 ~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R 449 (550)
.+.++++|+|+|++|+|.+|+|. ||+.+++.+|+...|.++..++..+|+ .+.+++++.++|++.+| +.+|| |
T Consensus 695 ~~~~~~~f~peflnRid~ii~F~---pL~~~~l~~Iv~~~l~~l~~rl~~~~i-~l~~~~~~~~~La~~~~~~~~GA--R 768 (821)
T CHL00095 695 NEELKQFFRPEFLNRLDEIIVFR---QLTKNDVWEIAEIMLKNLFKRLNEQGI-QLEVTERIKTLLIEEGYNPLYGA--R 768 (821)
T ss_pred HHHHHHhcCHHHhccCCeEEEeC---CCCHHHHHHHHHHHHHHHHHHHHHCCc-EEEECHHHHHHHHHhcCCCCCCh--h
Confidence 67788999999999999999999 999999999999999999999988899 99999999999999999 99999 9
Q ss_pred HHHHHHcc---hhhHHHHHhhhhcCCCccccccchhh
Q 036633 450 GLKRWMDQ---RPSADHVIDKFLRDAGYNHQSKEETE 483 (550)
Q Consensus 450 ~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~~~~ 483 (550)
+|+++|++ +||++.++.+.+..+..+.+++....
T Consensus 769 ~l~r~i~~~i~~~l~~~~l~~~~~~g~~v~~~~~~~~ 805 (821)
T CHL00095 769 PLRRAIMRLLEDPLAEEVLSFKIKPGDIIIVDVNDEK 805 (821)
T ss_pred hHHHHHHHHHHHHHHHHHHhCccCCCCEEEEEEeCCC
Confidence 99999999 99999999999999988888775433
No 6
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-65 Score=570.90 Aligned_cols=362 Identities=24% Similarity=0.338 Sum_probs=329.9
Q ss_pred hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh-hhhhcccCCCCchHHHHHHHHHHH
Q 036633 5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK-GIKRCLNSRDKYQKELDKHKYFLR 83 (550)
Q Consensus 5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~-~~~~~~~~~~~~~~~l~~l~~~~~ 83 (550)
..|+.||++++++||.||+|.|+|+|+.+||.||.| ||++|+||||||||||+ +.+... .| .
T Consensus 352 ~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~r--yi~~r~lPdKaidlldea~a~~~~--~~---~---------- 414 (758)
T PRK11034 352 EETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK--YINDRHLPDKAIDVIDEAGARARL--MP---V---------- 414 (758)
T ss_pred HHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhc--cccCccChHHHHHHHHHHHHhhcc--Cc---c----------
Confidence 468999999999999999999999999999999999 99999999999999999 333221 13 0
Q ss_pred HHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccHHHHHHHHHHHHhhhh
Q 036633 84 RAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKF 163 (550)
Q Consensus 84 ~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (550)
. .
T Consensus 415 -----------~--------~----------------------------------------------------------- 416 (758)
T PRK11034 415 -----------S--------K----------------------------------------------------------- 416 (758)
T ss_pred -----------c--------c-----------------------------------------------------------
Confidence 0 0
Q ss_pred cCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEE
Q 036633 164 KEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFL 242 (550)
Q Consensus 164 ~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lL 242 (550)
....|+.++|++++++|||||+..+..++.+++.+++..|+++|+||++|++.|..++.+. ++|+.++++| ++||
T Consensus 417 -~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~---~~gl~~~~kp~~~~L 492 (758)
T PRK11034 417 -RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMS---RAGLGHEHKPVGSFL 492 (758)
T ss_pred -cccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHH---hccccCCCCCcceEE
Confidence 0124899999999999999999999999999999999999999999999999999999999 9999999999 9999
Q ss_pred EeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------HHHHHHHhCCCCeEEeccc
Q 036633 243 FAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------SLAALVKKRPYSVVLFDKI 310 (550)
Q Consensus 243 f~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------~lt~al~~~p~~VlllDEI 310 (550)
|+||||||||++|+++|+.+.. +|+++||++|++.+++++++| .++++++++|++|||||||
T Consensus 493 f~GP~GvGKT~lAk~LA~~l~~------~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEi 566 (758)
T PRK11034 493 FAGPTGVGKTEVTVQLSKALGI------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_pred EECCCCCCHHHHHHHHHHHhCC------CcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccH
Confidence 9999999999999999999976 999999999999999999987 6899999999999999999
Q ss_pred cccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhh-h---hhhHhhHHHHhccCCChhhhhh
Q 036633 311 EKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVM-L---TATYGRVNEVTGSLFKPSLLKL 385 (550)
Q Consensus 311 eka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~-~---~~~~~~~~~~l~~~f~p~ll~R 385 (550)
||+||++++.|+++||+| + ++|+ |+.+||+|++||||||.|.+.+.... + ......+.+.++..|+|+|++|
T Consensus 567 eka~~~v~~~LLq~ld~G--~-ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~R 643 (758)
T PRK11034 567 EKAHPDVFNLLLQVMDNG--T-LTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNR 643 (758)
T ss_pred hhhhHHHHHHHHHHHhcC--e-eecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHcc
Confidence 999999999999999999 8 9999 99999999999999999987765422 1 1123445677889999999999
Q ss_pred ccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc---hhhH
Q 036633 386 LDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ---RPSA 461 (550)
Q Consensus 386 id~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~---~~la 461 (550)
||.+|+|. ||+.+++.+|+..+|.++.+++..+|+ .+.++++++++|++.+| +.+|| |+|+++|++ +|||
T Consensus 644 id~ii~f~---~L~~~~l~~I~~~~l~~~~~~l~~~~i-~l~~~~~~~~~l~~~~~~~~~GA--R~l~r~i~~~l~~~la 717 (758)
T PRK11034 644 LDNIIWFD---HLSTDVIHQVVDKFIVELQAQLDQKGV-SLEVSQEARDWLAEKGYDRAMGA--RPMARVIQDNLKKPLA 717 (758)
T ss_pred CCEEEEcC---CCCHHHHHHHHHHHHHHHHHHHHHCCC-CceECHHHHHHHHHhCCCCCCCC--chHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999988999 99999999999999999 99999 999999999 9999
Q ss_pred HHHHhhhhcCCCccccccc
Q 036633 462 DHVIDKFLRDAGYNHQSKE 480 (550)
Q Consensus 462 ~~~l~~~~~~~~~~~i~~~ 480 (550)
+.++.|.+.+++.+.+++.
T Consensus 718 ~~il~~~~~~~~~~~v~~~ 736 (758)
T PRK11034 718 NELLFGSLVDGGQVTVALD 736 (758)
T ss_pred HHHHhCcccCCCEEEEEEE
Confidence 9999999999998888775
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=1.4e-63 Score=565.51 Aligned_cols=361 Identities=26% Similarity=0.400 Sum_probs=328.0
Q ss_pred hhhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHhhh-hhcccCCCCchHHHHHHHHHH
Q 036633 4 HKFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGI-KRCLNSRDKYQKELDKHKYFL 82 (550)
Q Consensus 4 ~~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~~~-~~~~~~~~~~~~~l~~l~~~~ 82 (550)
...|.+||++++++||.||+|.|+|+||.+||.+|+| ||++|+||||||||||+.+ +.... |
T Consensus 347 ~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r--yi~~r~~P~kai~lld~a~a~~~~~--~------------- 409 (731)
T TIGR02639 347 IEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR--YINDRFLPDKAIDVIDEAGASFRLR--P------------- 409 (731)
T ss_pred HHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc--ccccccCCHHHHHHHHHhhhhhhcC--c-------------
Confidence 3568999999999999999999999999999999999 9999999999999999932 22111 1
Q ss_pred HHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccHHHHHHHHHHHHhhh
Q 036633 83 RRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHGK 162 (550)
Q Consensus 83 ~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (550)
. .
T Consensus 410 ------------~--~---------------------------------------------------------------- 411 (731)
T TIGR02639 410 ------------K--A---------------------------------------------------------------- 411 (731)
T ss_pred ------------c--c----------------------------------------------------------------
Confidence 0 0
Q ss_pred hcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeE
Q 036633 163 FKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLF 241 (550)
Q Consensus 163 ~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~l 241 (550)
.....|+.++|+++++.|||||+..+..++..++.+++..|+++|+||++|++.|.+++.+. ++|+.+|++| +++
T Consensus 412 -~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~---~~g~~~~~~p~~~~ 487 (731)
T TIGR02639 412 -KKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRS---RAGLGNPNKPVGSF 487 (731)
T ss_pred -ccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHH---hcCCCCCCCCceeE
Confidence 00245999999999999999999999999999999999999999999999999999999999 9999999999 999
Q ss_pred EEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------HHHHHHHhCCCCeEEecc
Q 036633 242 LFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------SLAALVKKRPYSVVLFDK 309 (550)
Q Consensus 242 Lf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------~lt~al~~~p~~VlllDE 309 (550)
||+||||||||++|++||+.++. +++++||++|++.|++++++| .++++++.+|++||+|||
T Consensus 488 lf~Gp~GvGKT~lA~~la~~l~~------~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDE 561 (731)
T TIGR02639 488 LFTGPTGVGKTELAKQLAEALGV------HLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDE 561 (731)
T ss_pred EEECCCCccHHHHHHHHHHHhcC------CeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEec
Confidence 99999999999999999999977 899999999999999999987 589999999999999999
Q ss_pred ccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhh----hhhhHhhHHHHhccCCChhhhh
Q 036633 310 IEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVM----LTATYGRVNEVTGSLFKPSLLK 384 (550)
Q Consensus 310 Ieka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~----~~~~~~~~~~~l~~~f~p~ll~ 384 (550)
|||+||++++.|+++||+| + ++|+ |+.+||+|++||||||.|+..+.... .......+...+++.|+|+|++
T Consensus 562 ieka~~~~~~~Ll~~ld~g--~-~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~ 638 (731)
T TIGR02639 562 IEKAHPDIYNILLQVMDYA--T-LTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN 638 (731)
T ss_pred hhhcCHHHHHHHHHhhccC--e-eecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh
Confidence 9999999999999999999 8 9999 99999999999999999987765421 1112345677888999999999
Q ss_pred hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc---hhh
Q 036633 385 LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ---RPS 460 (550)
Q Consensus 385 Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~---~~l 460 (550)
|||.+|+|. ||+.+++.+|+.+.+.++.+++..+|+ .+.++++++++|++.+| +.+|| |+|+++|++ +||
T Consensus 639 Rid~Vi~F~---pLs~e~l~~Iv~~~L~~l~~~l~~~~~-~l~i~~~a~~~La~~~~~~~~Ga--R~l~r~i~~~~~~~l 712 (731)
T TIGR02639 639 RLDAIIHFN---PLSEEVLEKIVQKFVDELSKQLNEKNI-KLELTDDAKKYLAEKGYDEEFGA--RPLARVIQEEIKKPL 712 (731)
T ss_pred cCCeEEEcC---CCCHHHHHHHHHHHHHHHHHHHHhCCC-eEEeCHHHHHHHHHhCCCcccCc--hHHHHHHHHHhHHHH
Confidence 999999999 999999999999999999999988899 99999999999999999 99999 999999999 999
Q ss_pred HHHHHhhhhcCCCccccc
Q 036633 461 ADHVIDKFLRDAGYNHQS 478 (550)
Q Consensus 461 a~~~l~~~~~~~~~~~i~ 478 (550)
++.++.|.+.+++.+.++
T Consensus 713 ~~~~l~~~~~~~~~~~~~ 730 (731)
T TIGR02639 713 SDEILFGKLKKGGSVKVD 730 (731)
T ss_pred HHHHHhCcCCCCCEEEEe
Confidence 999999999888776553
No 8
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-64 Score=559.31 Aligned_cols=443 Identities=25% Similarity=0.340 Sum_probs=381.1
Q ss_pred HHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHHHH
Q 036633 7 LVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYFLR 83 (550)
Q Consensus 7 ~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~~~ 83 (550)
|..||++++++||-||||.|+|+|++.|+.+|.| |++.|+|||+|||+.|| .++++..+.| +.|+.+++...
T Consensus 355 ~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~--~~t~r~lpd~aidl~dEa~a~~~~~~~~lP---~wL~~~~~~~~ 429 (898)
T KOG1051|consen 355 LSLILPGLSERYEVHHGVRISDESLFSAAQLSAR--YITLSFLPDCAIDLEDEAAALVKSQAESLP---PWLQNLERVDI 429 (898)
T ss_pred hhhhhhhhhhhhccccCCcccccccccccchhhh--hcccCcCchhcccHHHHHHHHHhhhhhhCC---HHHHhhhhhhh
Confidence 7889999999999999999999999999999999 99999999999999999 6788888999 99999999999
Q ss_pred HHHHHHHHHhhccCCchhhhhhHHHHHHHH---HHHHHHHHHHHHH--HHHHHH-------HHHHHhHHHhhhhccHHHH
Q 036633 84 RAVVEYEQLVKEDTDHSSRSFWLRQIDNEL---KDAFFELVSFVKL--RMQVEY-------DDFVSCVHDAKRVKDYSKI 151 (550)
Q Consensus 84 ~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~l~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~ 151 (550)
.++.|+.+|+++ .|.++..+ +. .+.+ +.....+...|+. .+.+++ +.... ++.+++..|+..+
T Consensus 430 ~~~~e~~~L~kk-~d~~~h~r-~~--~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~-~~k~~r~~d~~~~ 504 (898)
T KOG1051|consen 430 KLQDEISELQKK-WNQALHKR-PS--LESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSL-LAKAHRPNDYTRE 504 (898)
T ss_pred hhHHHHHHHHHh-hhhhhccc-cc--cccccccccccccchhhhccchhHHhhhccccCCcccchh-hhcccCCCCcchh
Confidence 999999999988 55444333 32 2222 4455567777762 333333 23333 5567777777766
Q ss_pred HH----HHH-HHHhhhhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcch
Q 036633 152 LD----QID-ARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPK 226 (550)
Q Consensus 152 ~~----~~~-~~~~~~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~ 226 (550)
.+ .+. ++.. +......++.+|+.++++|||+|.....+.+.+++..|++.|.++|+||++|+..|+.++.++
T Consensus 505 ~~l~~~~~p~~~~~--~~~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~s- 581 (898)
T KOG1051|consen 505 TDLRYGRIPDELSE--KSNDNQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRS- 581 (898)
T ss_pred hhccccccchhhhh--hcccccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhh-
Confidence 54 111 1111 111222289999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------HH
Q 036633 227 AAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------SL 293 (550)
Q Consensus 227 ~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------~l 293 (550)
++|+.+| +| ++|+|.||+|||||.||++||.++|+ ++..|+++|||+|++ +++++| +|
T Consensus 582 --r~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fg---se~~~IriDmse~~e---vskligsp~gyvG~e~gg~L 652 (898)
T KOG1051|consen 582 --RAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFG---SEENFIRLDMSEFQE---VSKLIGSPPGYVGKEEGGQL 652 (898)
T ss_pred --hcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcC---CccceEEechhhhhh---hhhccCCCcccccchhHHHH
Confidence 9999999 77 99999999999999999999999999 999999999999998 888877 89
Q ss_pred HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhhh-----h---
Q 036633 294 AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVML-----T--- 364 (550)
Q Consensus 294 t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~-----~--- 364 (550)
|++++++||+|||||||||||+++++.|+|++|+| + ++|+ |+.|||+|+|||||||.|+..+..... .
T Consensus 653 teavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G--r-ltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~ 729 (898)
T KOG1051|consen 653 TEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG--R-LTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMD 729 (898)
T ss_pred HHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC--c-cccCCCcEeeccceEEEEecccchHhhhcccccccccccch
Confidence 99999999999999999999999999999999999 9 9999 999999999999999999886654332 1
Q ss_pred -------hhHhhHHHHhc----cCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHH
Q 036633 365 -------ATYGRVNEVTG----SLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL 433 (550)
Q Consensus 365 -------~~~~~~~~~l~----~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~ 433 (550)
..+..+.+..+ .+|+|+|++|+|.++.|. |++.+++.+|+...+.++..++...++ .+.+++.+.
T Consensus 730 ~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~---~l~~~~~~~i~~~~~~e~~~r~~~~~~-~~~v~~~~~ 805 (898)
T KOG1051|consen 730 EKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNL---PLDRDELIEIVNKQLTEIEKRLEEREL-LLLVTDRVD 805 (898)
T ss_pred hhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeec---ccchhhHhhhhhhHHHHHHHHhhhhHH-HHHHHHHHH
Confidence 12355667777 899999999999999999 999999999999999999999988888 899999999
Q ss_pred HHHHhcCc-ccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCccccccch
Q 036633 434 VHIASNAA-RKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYNHQSKEE 481 (550)
Q Consensus 434 ~~L~~~~~-~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~~ 481 (550)
++++..+| +.||| |+|++.|+. +.++..++ +.++++..+.|....
T Consensus 806 ~~v~~~~~d~~ygA--r~ikr~i~~~~~~~la~~~l-~ei~~~~~~~i~~~~ 854 (898)
T KOG1051|consen 806 DKVLFKGYDFDYGA--RPIKRSIEERFENRLAEALL-GEVEDGLTERILVAD 854 (898)
T ss_pred hhhhhcCcChHHHh--hHHHHHHHHHHHHHHhhhhe-eeecCCceEEEEecc
Confidence 99999999 99999 999999999 89999988 888887777666644
No 9
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=2.4e-32 Score=287.19 Aligned_cols=243 Identities=20% Similarity=0.192 Sum_probs=190.2
Q ss_pred HHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC----cC-----C-CeeEEEeccCCCcHHHHHHHHHHHhccC
Q 036633 196 RYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS----RR-----Q-LGLFLFAGPNCSGKAELAKAIANELYDN 265 (550)
Q Consensus 196 ~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~----~~-----~-p~~lLf~Gp~GvGKT~lAk~la~~l~~~ 265 (550)
....++..|.+.|+||++|++.++.++..+ +.++.. +. . ++++||+||||||||++|++||+.+..
T Consensus 67 ~p~~i~~~L~~~ViGQe~A~~~l~~av~~h---~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~- 142 (413)
T TIGR00382 67 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNH---YKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV- 142 (413)
T ss_pred CHHHHHHHhcceecCHHHHHHHHHHHHHHH---HhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC-
Confidence 457889999999999999999999999776 566543 11 1 268999999999999999999998866
Q ss_pred CCCCCceeEEecCCCCchhhhhh-HHhHHHHHHHhCC-------CCeEEeccccccCH--------------HHHHHHHH
Q 036633 266 NDNDNHLIHFDMGNYTELESIKH-FFDSLAALVKKRP-------YSVVLFDKIEKANS--------------SILNLLLK 323 (550)
Q Consensus 266 ~~~~~~li~id~s~~~~~~~~s~-liG~lt~al~~~p-------~~VlllDEIeka~~--------------~v~~~Ll~ 323 (550)
+|..+|++.+.+...+.. .-+.++..++..+ .+||||||||++++ ++|+.||+
T Consensus 143 -----pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~ 217 (413)
T TIGR00382 143 -----PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLK 217 (413)
T ss_pred -----CeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHH
Confidence 999999988765433221 1124555554433 46999999999998 79999999
Q ss_pred hhhhcccccccc---C-CeEeecCCeEEEEeCCC---------ChHHHHHhh-h------h-h----h--H-----hhHH
Q 036633 324 ILKTDFNRKATR---G-IAAFDLTNTLIIMTSDL---------KDEQVYEVM-L------T-A----T--Y-----GRVN 371 (550)
Q Consensus 324 ~ld~g~~~~l~d---~-g~~vd~~~~iiI~TsN~---------g~~~~~~~~-~------~-~----~--~-----~~~~ 371 (550)
+|+ | + +++ . |+.++|+++++|+|||+ |.+.+.... . . . . . ....
T Consensus 218 iLe-G--~-~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 293 (413)
T TIGR00382 218 IIE-G--T-VANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEP 293 (413)
T ss_pred Hhh-c--c-ceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHH
Confidence 995 8 6 665 5 89999999999999999 555443211 0 0 0 0 0 1112
Q ss_pred HHh-ccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH----HHHhccCCCccccCCHHHHHHHHhcCc-ccCC
Q 036633 372 EVT-GSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET----KRRNNDSKAVIVCPSTSALVHIASNAA-RKYG 445 (550)
Q Consensus 372 ~~l-~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~----~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~G 445 (550)
+.+ +..|.|||++|+|.+++|. ||+.+++.+|+...++.+ .+.+..+|+ .+.++++++++|++.+| +.+|
T Consensus 294 ~dl~~~g~~PEflgRld~Iv~f~---pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi-~L~~t~~a~~~Ia~~~~~~~~G 369 (413)
T TIGR00382 294 EDLVKFGLIPEFIGRLPVIATLE---KLDEEALIAILTKPKNALVKQYQALFKMDNV-ELDFEEEALKAIAKKALERKTG 369 (413)
T ss_pred HHHHHHhhHHHHhCCCCeEeecC---CCCHHHHHHHHHHHHHHHHHHHHHHhccCCe-EEEECHHHHHHHHHhCCCCCCC
Confidence 233 4459999999999999999 999999999999865444 445556799 99999999999999999 9999
Q ss_pred CcccHHHHHHcc
Q 036633 446 QNGEGLKRWMDQ 457 (550)
Q Consensus 446 aN~R~L~~~i~~ 457 (550)
| |+|+++|++
T Consensus 370 A--R~Lr~iie~ 379 (413)
T TIGR00382 370 A--RGLRSIVEG 379 (413)
T ss_pred c--hHHHHHHHH
Confidence 9 999999998
No 10
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-29 Score=272.86 Aligned_cols=323 Identities=16% Similarity=0.215 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHhHHHhhhhc-c-------------HHHHHHHHHHHHhhhhcCCCcc
Q 036633 106 LRQIDNELKDAFFELVSFVK-L-RMQVEYDDFVSCVHDAKRVK-D-------------YSKILDQIDARVHGKFKEKLAV 169 (550)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~v 169 (550)
+.+++++|..+..+..+.-+ . .|+++++.++.+++...... + .+.+.+.+++++++++...+..
T Consensus 207 ~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p~evk~k~~~El~kL~~m~~~S 286 (782)
T COG0466 207 LLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMS 286 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 34455555444433333333 3 66777777777766443111 1 1223347788899998876666
Q ss_pred CHHHHHHHHHHH-hCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCC
Q 036633 170 DVEEIAEVASKL-TGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNC 248 (550)
Q Consensus 170 ~~~~i~~v~~~~-~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~G 248 (550)
.+..|.+.+-.| +.+||.+-.. +...+...+..|++..+|-+.++++|.+++... . +...-+...+||+||||
T Consensus 287 aE~~ViRnYlDwll~lPW~~~sk-~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~---~--l~~~~kGpILcLVGPPG 360 (782)
T COG0466 287 AEATVIRNYLDWLLDLPWGKRSK-DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQ---K--LTKKLKGPILCLVGPPG 360 (782)
T ss_pred chHHHHHHHHHHHHhCCCccccc-hhhhHHHHHHHhcccccCchhHHHHHHHHHHHH---H--HhccCCCcEEEEECCCC
Confidence 666665555555 9999998555 467799999999999999999999999999765 1 11111226999999999
Q ss_pred CcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh--------hhHHhHHHHHHHhC--CCCeEEeccccccCHH--
Q 036633 249 SGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI--------KHFFDSLAALVKKR--PYSVVLFDKIEKANSS-- 316 (550)
Q Consensus 249 vGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~--------s~liG~lt~al~~~--p~~VlllDEIeka~~~-- 316 (550)
||||+++++||+.+.+ .|+|+.++...+...+ ..+-|.+.+++++. .+.|++||||||++.+
T Consensus 361 VGKTSLgkSIA~al~R------kfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~r 434 (782)
T COG0466 361 VGKTSLGKSIAKALGR------KFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFR 434 (782)
T ss_pred CCchhHHHHHHHHhCC------CEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCC
Confidence 9999999999999998 9999999999865432 23333666666652 2359999999999864
Q ss_pred --HHHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEe
Q 036633 317 --ILNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVI 392 (550)
Q Consensus 317 --v~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f 392 (550)
-..+||.+||..||..|.|+ ...+|+++++||+|+|.- ..++++|++|+ ++|.+
T Consensus 435 GDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl---------------------~tIP~PLlDRM-EiI~l 492 (782)
T COG0466 435 GDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL---------------------DTIPAPLLDRM-EVIRL 492 (782)
T ss_pred CChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcc---------------------ccCChHHhcce-eeeee
Confidence 56899999999988889999 899999999999999963 46889999999 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc--cccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc--hhhHHHHHhh
Q 036633 393 DLAVPLLDTTRLLLREWACEETKRRNNDSKAV--IVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ--RPSADHVIDK 467 (550)
Q Consensus 393 ~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~--~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~--~~la~~~l~~ 467 (550)
. .++.++...|+.++| +.+.+.++|+- .+.++++++..|.++ | .+.|. |.|+|.|.. +..+..++.+
T Consensus 493 s---gYt~~EKl~IAk~~L--iPk~~~~~gL~~~el~i~d~ai~~iI~~-YTREAGV--R~LeR~i~ki~RK~~~~i~~~ 564 (782)
T COG0466 493 S---GYTEDEKLEIAKRHL--IPKQLKEHGLKKGELTITDEAIKDIIRY-YTREAGV--RNLEREIAKICRKAAKKILLK 564 (782)
T ss_pred c---CCChHHHHHHHHHhc--chHHHHHcCCCccceeecHHHHHHHHHH-HhHhhhh--hHHHHHHHHHHHHHHHHHHhc
Confidence 9 999999999999999 45555555542 589999999999984 5 78898 999999998 7777777775
Q ss_pred hhc
Q 036633 468 FLR 470 (550)
Q Consensus 468 ~~~ 470 (550)
+.+
T Consensus 565 ~~k 567 (782)
T COG0466 565 KEK 567 (782)
T ss_pred Ccc
Confidence 543
No 11
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.97 E-value=2.4e-31 Score=281.18 Aligned_cols=246 Identities=21% Similarity=0.203 Sum_probs=188.3
Q ss_pred HHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC-------cCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCC
Q 036633 196 RYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS-------RRQL-GLFLFAGPNCSGKAELAKAIANELYDNND 267 (550)
Q Consensus 196 ~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~-------~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~ 267 (550)
....+...|++.|+||++|++.++.++..+ +.++.. ...+ .++||+||||||||++|++||+.+..
T Consensus 61 ~p~~i~~~L~~~ViGq~~ak~~l~~av~~~---~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~--- 134 (412)
T PRK05342 61 TPKEIKAHLDQYVIGQERAKKVLSVAVYNH---YKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV--- 134 (412)
T ss_pred CHHHHHHHHhhHeeChHHHHHHHHHHHHHH---HHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC---
Confidence 456888899999999999999998888544 333321 1234 79999999999999999999999877
Q ss_pred CCCceeEEecCCCCchhhhhhHHh-HHHHH-------HHhCCCCeEEeccccccCH--------------HHHHHHHHhh
Q 036633 268 NDNHLIHFDMGNYTELESIKHFFD-SLAAL-------VKKRPYSVVLFDKIEKANS--------------SILNLLLKIL 325 (550)
Q Consensus 268 ~~~~li~id~s~~~~~~~~s~liG-~lt~a-------l~~~p~~VlllDEIeka~~--------------~v~~~Ll~~l 325 (550)
+|+++||+.+++...+..-.+ .++.. +...+++||||||||++++ ++|+.||++|
T Consensus 135 ---pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~L 211 (412)
T PRK05342 135 ---PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIL 211 (412)
T ss_pred ---CceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHH
Confidence 999999999876543222111 12221 3345779999999999976 4999999999
Q ss_pred hhccccccccC-CeEeecCCeEEEEeCCC---------ChHHHHHhh-h------h-h--h------HhhHHH-----Hh
Q 036633 326 KTDFNRKATRG-IAAFDLTNTLIIMTSDL---------KDEQVYEVM-L------T-A--T------YGRVNE-----VT 374 (550)
Q Consensus 326 d~g~~~~l~d~-g~~vd~~~~iiI~TsN~---------g~~~~~~~~-~------~-~--~------~~~~~~-----~l 374 (550)
|.+... ++++ |+..++.++++|+|||+ |.+.+.... . . . . ...+.+ .+
T Consensus 212 eg~~~~-v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL 290 (412)
T PRK05342 212 EGTVAS-VPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDL 290 (412)
T ss_pred hcCeEE-eCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHH
Confidence 855334 5777 89999999999999998 444332211 0 0 0 0 012222 22
Q ss_pred cc-CCChhhhhhccceeEecCCCCCCHHHHHHHHHH----HHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcc
Q 036633 375 GS-LFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW----ACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNG 448 (550)
Q Consensus 375 ~~-~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~----~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~ 448 (550)
.+ .|.|||++|+|.+++|+ ||+.+++.+|+.. .+.++.+.+..+|+ .+.++++++++|++.+| +.+||
T Consensus 291 ~~~gf~PEflgRld~iv~f~---~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i-~L~~t~~al~~Ia~~~~~~~~GA-- 364 (412)
T PRK05342 291 IKFGLIPEFIGRLPVVATLE---ELDEEALVRILTEPKNALVKQYQKLFEMDGV-ELEFTDEALEAIAKKAIERKTGA-- 364 (412)
T ss_pred HHHhhhHHHhCCCCeeeecC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc-EEEECHHHHHHHHHhCCCCCCCC--
Confidence 33 48999999999999999 9999999999985 55555666677899 99999999999999999 99999
Q ss_pred cHHHHHHcc
Q 036633 449 EGLKRWMDQ 457 (550)
Q Consensus 449 R~L~~~i~~ 457 (550)
|+|+++|++
T Consensus 365 R~Lrriie~ 373 (412)
T PRK05342 365 RGLRSILEE 373 (412)
T ss_pred chHHHHHHH
Confidence 999999998
No 12
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.97 E-value=1.7e-29 Score=288.59 Aligned_cols=276 Identities=19% Similarity=0.255 Sum_probs=208.5
Q ss_pred HHHHHHHHhhhhcCCCccCH-HHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhc
Q 036633 152 LDQIDARVHGKFKEKLAVDV-EEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKK 230 (550)
Q Consensus 152 ~~~~~~~~~~~~~~~~~v~~-~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~ 230 (550)
.+.+.+++.++....+...+ ..+...+..++++||.+...+ ...+..++..|.+.++||+.+++.|...+... ..
T Consensus 266 ~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~---~~ 341 (775)
T TIGR00763 266 KKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILEYLAVQ---KL 341 (775)
T ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHH---Hh
Confidence 34677788877765443444 445568888899999987666 77799999999999999999999999877644 21
Q ss_pred CCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh----hhHHh----HHHHHHHh--C
Q 036633 231 GLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI----KHFFD----SLAALVKK--R 300 (550)
Q Consensus 231 gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~----s~liG----~lt~al~~--~ 300 (550)
. ...++.++||+||||||||++|++||+.+.. ++++++++.+.+.... ...+| .+.+++.. .
T Consensus 342 ~--~~~~~~~lll~GppG~GKT~lAk~iA~~l~~------~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~ 413 (775)
T TIGR00763 342 R--GKMKGPILCLVGPPGVGKTSLGKSIAKALNR------KFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKT 413 (775)
T ss_pred h--cCCCCceEEEECCCCCCHHHHHHHHHHHhcC------CeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCc
Confidence 1 1112258999999999999999999999987 9999998876543211 12222 33344332 2
Q ss_pred CCCeEEeccccccCHH----HHHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHh
Q 036633 301 PYSVVLFDKIEKANSS----ILNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVT 374 (550)
Q Consensus 301 p~~VlllDEIeka~~~----v~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l 374 (550)
..+||||||||+++++ ..+.|+++||+.++..+.|. +..+|+++++||+|||..
T Consensus 414 ~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~-------------------- 473 (775)
T TIGR00763 414 KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI-------------------- 473 (775)
T ss_pred CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc--------------------
Confidence 3359999999999774 45899999996433338887 889999999999999973
Q ss_pred ccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc--cccCCHHHHHHHHhcCc-ccCCCcccHH
Q 036633 375 GSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV--IVCPSTSALVHIASNAA-RKYGQNGEGL 451 (550)
Q Consensus 375 ~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~--~l~~~~~a~~~L~~~~~-~~~GaN~R~L 451 (550)
..++|+|++|| .+|.|. +|+.++...|+..++.. +.+...|+- .+.++++++.+|+. +| .++|+ |+|
T Consensus 474 -~~i~~~L~~R~-~vi~~~---~~~~~e~~~I~~~~l~~--~~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~--R~l 543 (775)
T TIGR00763 474 -DTIPRPLLDRM-EVIELS---GYTEEEKLEIAKKYLIP--KALEDHGLKPDELKITDEALLLLIK-YYTREAGV--RNL 543 (775)
T ss_pred -hhCCHHHhCCe-eEEecC---CCCHHHHHHHHHHHHHH--HHHHHcCCCcceEEECHHHHHHHHH-hcChhcCC--hHH
Confidence 46899999999 689999 99999999999988853 333333331 46899999999998 67 88899 999
Q ss_pred HHHHcc--hhhHHHHHh-hhh
Q 036633 452 KRWMDQ--RPSADHVID-KFL 469 (550)
Q Consensus 452 ~~~i~~--~~la~~~l~-~~~ 469 (550)
+|.|+. ...+..++. +..
T Consensus 544 ~r~i~~~~~~~~~~~~~~~~~ 564 (775)
T TIGR00763 544 ERQIEKICRKAAVKLVEQGEK 564 (775)
T ss_pred HHHHHHHHHHHHHHHHhccCc
Confidence 999998 555666654 443
No 13
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.97 E-value=4.3e-29 Score=283.04 Aligned_cols=287 Identities=17% Similarity=0.231 Sum_probs=221.9
Q ss_pred HHHHHHHHHHhhhhcCCCccCHHHHHHHHHHH-hCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhh
Q 036633 150 KILDQIDARVHGKFKEKLAVDVEEIAEVASKL-TGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAA 228 (550)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~v~~~~i~~v~~~~-~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~ 228 (550)
++.+.+++++.+++...+...+..|...+-.| +.+||++.+.+ ...+...++.|.+.++|++.++++|.+.+...
T Consensus 266 ~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~-~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~--- 341 (784)
T PRK10787 266 EAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKV-KKDLRQAQEILDTDHYGLERVKDRILEYLAVQ--- 341 (784)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCCcc-cccHHHHHHHhhhhccCHHHHHHHHHHHHHHH---
Confidence 33447788888888766666666666655555 99999997665 46789999999999999999999999888743
Q ss_pred hcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh----hhHH----hHHHHHHHhC
Q 036633 229 KKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI----KHFF----DSLAALVKKR 300 (550)
Q Consensus 229 ~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~----s~li----G~lt~al~~~ 300 (550)
. ..... +...++|+||||||||++|+.+|+.+.. ++++++++...+...+ ..++ |.+..++...
T Consensus 342 ~-~~~~~-~g~~i~l~GppG~GKTtl~~~ia~~l~~------~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~ 413 (784)
T PRK10787 342 S-RVNKI-KGPILCLVGPPGVGKTSLGQSIAKATGR------KYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV 413 (784)
T ss_pred H-hcccC-CCceEEEECCCCCCHHHHHHHHHHHhCC------CEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc
Confidence 1 11111 2257999999999999999999999877 8999999987654332 1122 2444555442
Q ss_pred --CCCeEEeccccccCHHH----HHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHH
Q 036633 301 --PYSVVLFDKIEKANSSI----LNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNE 372 (550)
Q Consensus 301 --p~~VlllDEIeka~~~v----~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~ 372 (550)
...|+||||||+++++. ++.|++++|++++..++|. ...+|+++++||+|+|.
T Consensus 414 ~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~------------------- 474 (784)
T PRK10787 414 GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS------------------- 474 (784)
T ss_pred CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCC-------------------
Confidence 34699999999999876 5999999998866558887 67899999999999995
Q ss_pred HhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHH-HHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccH
Q 036633 373 VTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACE-ETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEG 450 (550)
Q Consensus 373 ~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~-~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~ 450 (550)
-.++|+|++|| .+|.|. +|+.+++.+|+.++|. +..++....+. .+.++++++++|++ +| +.+|+ |+
T Consensus 475 ---~~i~~aLl~R~-~ii~~~---~~t~eek~~Ia~~~L~~k~~~~~~l~~~-~l~i~~~ai~~ii~-~yt~e~Ga--R~ 543 (784)
T PRK10787 475 ---MNIPAPLLDRM-EVIRLS---GYTEDEKLNIAKRHLLPKQIERNALKKG-ELTVDDSAIIGIIR-YYTREAGV--RS 543 (784)
T ss_pred ---CCCCHHHhcce-eeeecC---CCCHHHHHHHHHHhhhHHHHHHhCCCCC-eEEECHHHHHHHHH-hCCcccCC--cH
Confidence 24899999999 699999 9999999999999995 34444433455 78999999999998 78 99999 99
Q ss_pred HHHHHcc---hhhHHHHHhhhhcCCCccccccch
Q 036633 451 LKRWMDQ---RPSADHVIDKFLRDAGYNHQSKEE 481 (550)
Q Consensus 451 L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~~ 481 (550)
|+|.|++ .++++.++.+.. ..+.++.+.
T Consensus 544 LeR~I~~i~r~~l~~~~~~~~~---~~v~v~~~~ 574 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDKSL---KHIEINGDN 574 (784)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC---ceeeecHHH
Confidence 9999998 566665555432 234455443
No 14
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.97 E-value=2.8e-29 Score=260.49 Aligned_cols=291 Identities=17% Similarity=0.175 Sum_probs=224.0
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..+||++.|+..+...+... .....++|+.|+|||||..+|++|++...+ .++||+.+||+.+++...
T Consensus 223 ~~iIG~S~am~~ll~~i~~V---------A~Sd~tVLi~GETGtGKElvAraIH~~S~R---~~kPfV~~NCAAlPesLl 290 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVV---------AKSDSTVLIRGETGTGKELVARAIHQLSPR---RDKPFVKLNCAALPESLL 290 (550)
T ss_pred ccceecCHHHHHHHHHHHHH---------hcCCCeEEEecCCCccHHHHHHHHHhhCcc---cCCCceeeeccccchHHH
Confidence 37999999999999999877 112279999999999999999999999999 999999999999999999
Q ss_pred hhhHHh----HHHHHHHhCC-------CCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633 286 IKHFFD----SLAALVKKRP-------YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 286 ~s~liG----~lt~al~~~p-------~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~ 353 (550)
.|.||| .||+|++.++ ++.+|||||..++...|..||++|++|++.++... ..+||.+ ||++||.
T Consensus 291 ESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVR---iIAATNR 367 (550)
T COG3604 291 ESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVR---VIAATNR 367 (550)
T ss_pred HHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEE---EEeccch
Confidence 999999 9999998866 47999999999999999999999999955544444 5667776 9999998
Q ss_pred ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
+...... .+.|+.+|++|+ .++|.. .|||.+ +|+..++..++.+++.++... .+.++++
T Consensus 368 DL~~~V~--------------~G~FRaDLYyRL-sV~Pl~-lPPLRER~~DIplLA~~Fle~~~~~~gr~---~l~ls~~ 428 (550)
T COG3604 368 DLEEMVR--------------DGEFRADLYYRL-SVFPLE-LPPLRERPEDIPLLAGYFLEKFRRRLGRA---ILSLSAE 428 (550)
T ss_pred hHHHHHH--------------cCcchhhhhhcc-cccccC-CCCcccCCccHHHHHHHHHHHHHHhcCCc---ccccCHH
Confidence 8766655 578999999999 588887 458865 999999999999999887655 5689999
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcc-hhhHHHHHhhhhcCCCccccccchhhccccccccCCC-CCCCccccccccc--
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQ-RPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGG-GGGGVEYWWEEST-- 507 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~-~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~d-k~g~~~y~~~~~~-- 507 (550)
|++.|.++.|| | |+|+|+++|++ ..++ .+....+. . .+................ ..+. +.-..|.
T Consensus 429 Al~~L~~y~wP--G-NVRELen~veRavlla----~~~~~~~d-~-~~l~~~~~~~~~~~~~~~~p~~~--~~~~~p~~~ 497 (550)
T COG3604 429 ALELLSSYEWP--G-NVRELENVVERAVLLA----GRLTRRGD-L-CTLELSLSALLWKTLPAPEPSAL--PEPALPGEH 497 (550)
T ss_pred HHHHHHcCCCC--C-cHHHHHHHHHHHHHHh----cccCCCcc-e-eehhhhhhccccccCCCCCcccc--CCccCCCcc
Confidence 99999998887 8 99999999998 2222 11222222 1 112111110001111110 0001 1112222
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036633 508 ---EGLSLEELKKYMDSLEALRNNVAIKLEEMMMRRA 541 (550)
Q Consensus 508 ---~~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~ 541 (550)
...+..|.+.+..+|++-..|....|+.|.+.+.
T Consensus 498 ~l~~~~~~~eR~~I~~aL~~~~~~~a~AAr~LGl~~~ 534 (550)
T COG3604 498 TLREATEEFERQLIIAALEETNGNWAGAARRLGLTRR 534 (550)
T ss_pred cchhhhHHHHHHHHHHHHHHhCCcHHHHHHHhCCCHH
Confidence 3455668888999999999999999999887654
No 15
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-27 Score=256.10 Aligned_cols=300 Identities=21% Similarity=0.261 Sum_probs=238.3
Q ss_pred HHHHHHHHHHHhHHHhhhhcc---------------HHHHHHHHHHHHhhhhcCCCccCHHHHHHHHHHH-hCCCCCCCC
Q 036633 127 RMQVEYDDFVSCVHDAKRVKD---------------YSKILDQIDARVHGKFKEKLAVDVEEIAEVASKL-TGIPASWFC 190 (550)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~v~~~~i~~v~~~~-~gip~~~~~ 190 (550)
-|.+++..++.++.....+.| .+.+.+.+++++.+++...+..++-.|...+-.| |.+||++.+
T Consensus 317 lL~eQlk~IKkeLg~e~Ddkd~~~~~~~er~~~~~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S 396 (906)
T KOG2004|consen 317 LLREQLKAIKKELGIEKDDKDALVEKFRERIKSLKMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSS 396 (906)
T ss_pred HHHHHHHHHHHhhCCCccchhhHHHHHHHHhhhccCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCC
Confidence 456666666666654333322 1122336788888888878888888999888777 899999976
Q ss_pred CchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCC
Q 036633 191 TKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDN 270 (550)
Q Consensus 191 ~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~ 270 (550)
.+ .-.+...+..|.+..+|-++++++|.+.+... + +...-+..++||+||||||||++|++||+.|.+
T Consensus 397 ~E-n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~---k--Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR------ 464 (906)
T KOG2004|consen 397 TE-NLDLARAKEILDEDHYGMEDVKERILEFIAVG---K--LRGSVQGKILCFVGPPGVGKTSIAKSIARALNR------ 464 (906)
T ss_pred hh-hhhHHHHHHhhcccccchHHHHHHHHHHHHHH---h--hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC------
Confidence 65 56688999999999999999999999999876 3 333334479999999999999999999999998
Q ss_pred ceeEEecCCCCchhhh--------hhHHhHHHHHHHhCC--CCeEEeccccccCH----HHHHHHHHhhhhccccccccC
Q 036633 271 HLIHFDMGNYTELESI--------KHFFDSLAALVKKRP--YSVVLFDKIEKANS----SILNLLLKILKTDFNRKATRG 336 (550)
Q Consensus 271 ~li~id~s~~~~~~~~--------s~liG~lt~al~~~p--~~VlllDEIeka~~----~v~~~Ll~~ld~g~~~~l~d~ 336 (550)
.|+||..+.+++...+ ..+-|.+.+++++.. +.+++||||||... +-..+||.+||..||..+.|.
T Consensus 465 kFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDH 544 (906)
T KOG2004|consen 465 KFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDH 544 (906)
T ss_pred ceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhh
Confidence 9999999999865432 223338888888632 45999999999864 456899999999988889999
Q ss_pred --CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH
Q 036633 337 --IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET 414 (550)
Q Consensus 337 --g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~ 414 (550)
...+|++.++||||+|.- ..++|+|+.|+ ++|... .|..++...|+..+|-.
T Consensus 545 YLdVp~DLSkVLFicTAN~i---------------------dtIP~pLlDRM-EvIels---GYv~eEKv~IA~~yLip- 598 (906)
T KOG2004|consen 545 YLDVPVDLSKVLFICTANVI---------------------DTIPPPLLDRM-EVIELS---GYVAEEKVKIAERYLIP- 598 (906)
T ss_pred ccccccchhheEEEEecccc---------------------ccCChhhhhhh-heeecc---CccHHHHHHHHHHhhhh-
Confidence 899999999999999973 57899999999 899999 99999999999999943
Q ss_pred HHHhccCCCc--cccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc--hhhHHHHHhhh
Q 036633 415 KRRNNDSKAV--IVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ--RPSADHVIDKF 468 (550)
Q Consensus 415 ~~~l~~~~~~--~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~--~~la~~~l~~~ 468 (550)
+.+...|+- .+.++++++..|.++ | .+.|. |.|++-|+. +..|-.+..+.
T Consensus 599 -~a~~~~gl~~e~v~is~~al~~lI~~-YcrEaGV--RnLqk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 599 -QALKDCGLKPEQVKISDDALLALIER-YCREAGV--RNLQKQIEKICRKVALKVVEGE 653 (906)
T ss_pred -HHHHHcCCCHHhcCccHHHHHHHHHH-HHHHHhH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 333344441 478999998888873 5 77798 999999998 66666666544
No 16
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.96 E-value=1e-29 Score=238.75 Aligned_cols=147 Identities=31% Similarity=0.491 Sum_probs=126.1
Q ss_pred CC-eeEEEeccCCCcHHHHHHHHHHHhc-cCCCCCCceeEEecCCCCc----hhhhhhHHhHHHHHHHhCCCCeEEeccc
Q 036633 237 QL-GLFLFAGPNCSGKAELAKAIANELY-DNNDNDNHLIHFDMGNYTE----LESIKHFFDSLAALVKKRPYSVVLFDKI 310 (550)
Q Consensus 237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~-~~~~~~~~li~id~s~~~~----~~~~s~liG~lt~al~~~p~~VlllDEI 310 (550)
|| ++++|+||||||||++|++||+.++ + ...+++++||++|++ .+.+++++|.....+...+++|||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~---~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVG---SERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-S---SCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccC---CccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 57 9999999999999999999999999 8 888999999999999 7778888884444444555679999999
Q ss_pred cccCH-----------HHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhhh------hhhHhhHHH
Q 036633 311 EKANS-----------SILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVML------TATYGRVNE 372 (550)
Q Consensus 311 eka~~-----------~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~------~~~~~~~~~ 372 (550)
||+|+ .||+.||++||+| + ++|+ |+.+||+|++||||||.+...+..... ........+
T Consensus 78 dKa~~~~~~~~~v~~~~V~~~LL~~le~g--~-~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (171)
T PF07724_consen 78 DKAHPSNSGGADVSGEGVQNSLLQLLEGG--T-LTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSGEAIEQEQEEQIRD 154 (171)
T ss_dssp GGCSHTTTTCSHHHHHHHHHHHHHHHHHS--E-EEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHCTCCHHHHCHHHHH
T ss_pred hhccccccccchhhHHHHHHHHHHHhccc--c-eecccceEEEeCCceEEEecccccchhhhhhccccccHHHHHHHHHH
Confidence 99999 9999999999999 8 9999 999999999999999999988876432 123456777
Q ss_pred HhccCCChhhhhhccce
Q 036633 373 VTGSLFKPSLLKLLDKL 389 (550)
Q Consensus 373 ~l~~~f~p~ll~Rid~i 389 (550)
.++..|+|||++|||.|
T Consensus 155 ~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 155 LVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp HHHHTS-HHHHTTSSEE
T ss_pred HHHcCCCHHHHccCCcC
Confidence 88899999999999753
No 17
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.96 E-value=3.8e-28 Score=255.46 Aligned_cols=288 Identities=18% Similarity=0.214 Sum_probs=220.5
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
+.++|.+.++..+...+++. ...+.++|+.|+|||||..+|++|++.+.+ .+.||+.+||+.+++..-
T Consensus 245 ~~Iig~S~~m~~~~~~akr~---------A~tdstVLi~GESGTGKElfA~~IH~~S~R---~~~PFIaiNCaAiPe~Ll 312 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRI---------AKTDSTVLILGESGTGKELFARAIHNLSPR---ANGPFIAINCAAIPETLL 312 (560)
T ss_pred hhhccCCHHHHHHHHHHHhh---------cCCCCcEEEecCCCccHHHHHHHHHhcCcc---cCCCeEEEecccCCHHHH
Confidence 47999999999998888876 223489999999999999999999999999 899999999999999999
Q ss_pred hhhHHh----HHHHHHHh-CC-------CCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCC
Q 036633 286 IKHFFD----SLAALVKK-RP-------YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSD 352 (550)
Q Consensus 286 ~s~liG----~lt~al~~-~p-------~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN 352 (550)
.|.||| +||+|.+. +| ++.||||||..++...|..||++|+++++.++... ...+|++ ||++||
T Consensus 313 ESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVR---IIAATN 389 (560)
T COG3829 313 ESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVR---IIAATN 389 (560)
T ss_pred HHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEE---EEeccC
Confidence 999999 99999885 33 48999999999999999999999999955544444 6778777 999999
Q ss_pred CChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCH
Q 036633 353 LKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPST 430 (550)
Q Consensus 353 ~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~ 430 (550)
...+.... .+.|+.+|++|+ .+++.. .|||.+ +||..++..+|.++++++... .-.+++
T Consensus 390 ~nL~~~i~--------------~G~FReDLYYRL-NV~~i~-iPPLReR~eDI~~L~~~Fl~k~s~~~~~~---v~~ls~ 450 (560)
T COG3829 390 RNLEKMIA--------------EGTFREDLYYRL-NVIPIT-IPPLRERKEDIPLLAEYFLDKFSRRYGRN---VKGLSP 450 (560)
T ss_pred cCHHHHHh--------------cCcchhhheeee-ceeeec-CCCcccCcchHHHHHHHHHHHHHHHcCCC---cccCCH
Confidence 98877665 579999999999 577777 558865 999999999999999887553 235899
Q ss_pred HHHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccc-cccccCCCCCCCc-ccccccccC
Q 036633 431 SALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDME-ESTELGGGGGGGV-EYWWEESTE 508 (550)
Q Consensus 431 ~a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~-~~~~l~~dk~g~~-~y~~~~~~~ 508 (550)
+++..|..+.|| | |+|+|+++|++ .+- +. .+++. | ...+++ .....--...... ...-....+
T Consensus 451 ~a~~~L~~y~WP--G-NVRELeNviER-~v~---~~---~~~~~--I---~~~~lp~~~l~~k~~~~~~~~~~~~~~l~~ 515 (560)
T COG3829 451 DALALLLRYDWP--G-NVRELENVIER-AVN---LV---ESDGL--I---DADDLPAFALEEKEPRPETTKQIEVGSLKE 515 (560)
T ss_pred HHHHHHHhCCCC--c-hHHHHHHHHHH-HHh---cc---CCcce--e---ehhhcchhhhcccccCcCcccCcccccHHH
Confidence 999999999997 8 99999999998 111 11 11111 2 222222 1110000000000 000011122
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633 509 GLSLEELKKYMDSLEALRNNVAIKLEEMMMRRAC 542 (550)
Q Consensus 509 ~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~~ 542 (550)
.+...|...+..+|+.-.+|....|..|.+.+.+
T Consensus 516 ~~e~~Ek~~I~~aL~~~~gn~~~aAk~LgIsrtt 549 (560)
T COG3829 516 ALEEYEKHLIREALERHGGNKSKAAKELGISRTT 549 (560)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHH
Confidence 3334577788899999999999999999887653
No 18
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.96 E-value=4e-28 Score=255.91 Aligned_cols=292 Identities=17% Similarity=0.149 Sum_probs=217.8
Q ss_pred hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633 203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE 282 (550)
Q Consensus 203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~ 282 (550)
.....++|++.++.++.+.+.+. .....++|+.|+|||||..+|++|++...+ ...||+.+||+.+++
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv---------A~s~a~VLI~GESGtGKElvAr~IH~~S~R---~~~PFVavNcaAip~ 205 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV---------APSDASVLITGESGTGKELVARAIHQASPR---AKGPFIAVNCAAIPE 205 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH---------hCCCCCEEEECCCCCcHHHHHHHHHhhCcc---cCCCceeeecccCCH
Confidence 35678999999999999999887 112279999999999999999999999988 889999999999999
Q ss_pred hhhhhhHHh----HHHHHHHhC-------CCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEe
Q 036633 283 LESIKHFFD----SLAALVKKR-------PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMT 350 (550)
Q Consensus 283 ~~~~s~liG----~lt~al~~~-------p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~T 350 (550)
..-.|.||| .||++..++ .++++|||||+.++.++|..||+++++|+++++..+ ..++|.+ ||++
T Consensus 206 ~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR---iIaa 282 (464)
T COG2204 206 NLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVR---IIAA 282 (464)
T ss_pred HHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeE---EEee
Confidence 999999999 888887664 358999999999999999999999999943322222 3445555 9999
Q ss_pred CCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccC
Q 036633 351 SDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCP 428 (550)
Q Consensus 351 sN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~ 428 (550)
||.+...... .+.|+++|++|+ .++++. .|||.+ +||..++.+++.++..++... ...+
T Consensus 283 T~~dL~~~v~--------------~G~FReDLyyRL-nV~~i~-iPpLRER~EDIp~L~~hfl~~~~~~~~~~---~~~~ 343 (464)
T COG2204 283 TNRDLEEEVA--------------AGRFREDLYYRL-NVVPLR-LPPLRERKEDIPLLAEHFLKRFAAELGRP---PKGF 343 (464)
T ss_pred cCcCHHHHHH--------------cCCcHHHHHhhh-ccceec-CCcccccchhHHHHHHHHHHHHHHHcCCC---CCCC
Confidence 9998766655 579999999999 688888 558876 999999999999999887544 4588
Q ss_pred CHHHHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhc--cccccccCCCCCCCcccccccc
Q 036633 429 STSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETED--MEESTELGGGGGGGVEYWWEES 506 (550)
Q Consensus 429 ~~~a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~--~~~~~~l~~dk~g~~~y~~~~~ 506 (550)
+++++..|..|.|| | |+|+|++++++ +-.+..+ ..+......... ...... ....+...-.....
T Consensus 344 s~~a~~~L~~y~WP--G-NVREL~N~ver---~~il~~~-----~~i~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~l 410 (464)
T COG2204 344 SPEALAALLAYDWP--G-NVRELENVVER---AVILSEG-----PEIEVEDLPLEILAPAAEAL--AGPAGEAALPGLPL 410 (464)
T ss_pred CHHHHHHHHhCCCC--h-HHHHHHHHHHH---HHhcCCc-----cccchhhccccccccccccc--cccccccccccccH
Confidence 99999999999887 8 99999999998 1111121 111110000000 000000 00000000000001
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036633 507 TEGLSLEELKKYMDSLEALRNNVAIKLEEMMMRRA 541 (550)
Q Consensus 507 ~~~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~ 541 (550)
...+...|.+-+..+|+...+|+...|+.|.+.+.
T Consensus 411 ~~~~~~~Er~~I~~aL~~~~g~~~~aA~~LGi~R~ 445 (464)
T COG2204 411 GEALAEVERQLILQALERTGGNKSEAAERLGISRK 445 (464)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHCCCHH
Confidence 12334456777888999999999999999988764
No 19
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.91 E-value=1.4e-23 Score=217.38 Aligned_cols=214 Identities=15% Similarity=0.164 Sum_probs=170.0
Q ss_pred ccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhh
Q 036633 208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287 (550)
Q Consensus 208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s 287 (550)
++|++.++..+...+.+. . ....++||.|++||||+.+|++|+....+ ...||+.+||+.+.+....+
T Consensus 1 liG~S~~m~~~~~~~~~~---a------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r---~~~pfv~vnc~~~~~~~l~~ 68 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL---A------PLDRPVLIIGERGTGKELIAARLHYLSKR---WQGPLVKLNCAALSENLLDS 68 (329)
T ss_pred CCcCCHHHHHHHHHHHHH---h------CCCCCEEEECCCCChHHHHHHHHHHhcCc---cCCCeEEEeCCCCChHHHHH
Confidence 589999999999999877 1 12378999999999999999999999887 77899999999998776677
Q ss_pred hHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCCh
Q 036633 288 HFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKD 355 (550)
Q Consensus 288 ~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~ 355 (550)
.+|| .++++ +....+++||||||+.+++++|..|++++++| . +... +...--.++.||+|||...
T Consensus 69 ~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~--~-~~~~g~~~~~~~~~RiI~at~~~l 145 (329)
T TIGR02974 69 ELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYG--E-FERVGGSQTLQVDVRLVCATNADL 145 (329)
T ss_pred HHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcC--c-EEecCCCceeccceEEEEechhhH
Confidence 8888 34443 33445689999999999999999999999999 5 4332 3333334567999998765
Q ss_pred HHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC--HHHHHHHHHHHHHHHHHHhccCCCccccCCHHHH
Q 036633 356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL--DTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL 433 (550)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~--~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~ 433 (550)
..... .+.|+++|++|++ .+.+. .|||. .+|+..++..++.++..++...- ...++++++
T Consensus 146 ~~~~~--------------~g~fr~dL~~rl~-~~~i~-lPpLReR~eDI~~L~~~fl~~~~~~~~~~~--~~~ls~~a~ 207 (329)
T TIGR02974 146 PALAA--------------EGRFRADLLDRLA-FDVIT-LPPLRERQEDIMLLAEHFAIRMARELGLPL--FPGFTPQAR 207 (329)
T ss_pred HHHhh--------------cCchHHHHHHHhc-chhcC-CCchhhhhhhHHHHHHHHHHHHHHHhCCCC--CCCcCHHHH
Confidence 44433 4789999999994 33444 23898 49999999999998776643221 147899999
Q ss_pred HHHHhcCcccCCCcccHHHHHHcc
Q 036633 434 VHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 434 ~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+.|..+.|| | |+|.|+++|++
T Consensus 208 ~~L~~y~WP--G-NvrEL~n~i~~ 228 (329)
T TIGR02974 208 EQLLEYHWP--G-NVRELKNVVER 228 (329)
T ss_pred HHHHhCCCC--c-hHHHHHHHHHH
Confidence 999999987 8 99999999997
No 20
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.90 E-value=3.2e-23 Score=228.72 Aligned_cols=215 Identities=18% Similarity=0.201 Sum_probs=171.4
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
...++|++.++..+.+.+.+. . ....+++|+||+|||||++|++|+....+ ...||+.+||+.+++..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~---a------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r---~~~pfv~i~c~~~~~~~ 262 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVV---A------RSNSTVLLRGESGTGKELIAKAIHYLSPR---AKRPFVKVNCAALSETL 262 (534)
T ss_pred cCceEECCHHHHHHHHHHHHH---h------CcCCCEEEECCCCccHHHHHHHHHHhCCC---CCCCeEEeecCCCCHHH
Confidence 357999999999999999876 1 12368999999999999999999999887 78899999999998877
Q ss_pred hhhhHHh----HHHHHH-------HhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCC
Q 036633 285 SIKHFFD----SLAALV-------KKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSD 352 (550)
Q Consensus 285 ~~s~liG----~lt~al-------~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN 352 (550)
..+.+|| .++++. ....+++||||||+.+++++|..|++++++| . +... +......++.||+|||
T Consensus 263 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~--~-~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 263 LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEG--E-FERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcC--c-EEECCCCceEeecEEEEEeCC
Confidence 7778888 344432 2344689999999999999999999999999 5 4432 2222223455999999
Q ss_pred CChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC--HHHHHHHHHHHHHHHHHHhccCCCccccCCH
Q 036633 353 LKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL--DTTRLLLREWACEETKRRNNDSKAVIVCPST 430 (550)
Q Consensus 353 ~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~--~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~ 430 (550)
........ .+.|+++|++|++ .+.+. .|||. .+|+..++..++.++..+. +. .+.+++
T Consensus 340 ~~l~~~~~--------------~~~f~~~L~~rl~-~~~i~-lPpLreR~eDi~~L~~~~l~~~~~~~---~~-~~~~s~ 399 (534)
T TIGR01817 340 RDLEEAVA--------------KGEFRADLYYRIN-VVPIF-LPPLRERREDIPLLAEAFLEKFNREN---GR-PLTITP 399 (534)
T ss_pred CCHHHHHH--------------cCCCCHHHHHHhc-CCeee-CCCcccccccHHHHHHHHHHHHHHHc---CC-CCCCCH
Confidence 87654332 5789999999995 43433 23887 5999999999998876654 44 458999
Q ss_pred HHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 431 SALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 431 ~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++++.|..+.|| | |+|.|+++|++
T Consensus 400 ~a~~~L~~~~WP--G-NvrEL~~v~~~ 423 (534)
T TIGR01817 400 SAIRVLMSCKWP--G-NVRELENCLER 423 (534)
T ss_pred HHHHHHHhCCCC--C-hHHHHHHHHHH
Confidence 999999999887 8 99999999997
No 21
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.90 E-value=6.5e-23 Score=224.70 Aligned_cols=291 Identities=15% Similarity=0.118 Sum_probs=204.4
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
...++|++.++..+.+.+.+. ...+.+++++|++||||+.+|++|+....+ .+.+|+.+||+.+.+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~---------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r---~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVV---------AASDLNVLILGETGVGKELVARAIHAASPR---ADKPLVYLNCAALPESL 253 (509)
T ss_pred CCceeecCHHHHHHHHHHHHH---------hCCCCcEEEECCCCccHHHHHHHHHHhCCc---CCCCeEEEEcccCChHH
Confidence 356999999999999999977 113379999999999999999999999887 78899999999998776
Q ss_pred hhhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCC
Q 036633 285 SIKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSD 352 (550)
Q Consensus 285 ~~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN 352 (550)
..+.||| .++++ +....+++||||||+.+++++|..|++++++| . +... +....-.++.||+|||
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~--~-~~~~g~~~~~~~~~RiI~~t~ 330 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYG--E-IQRVGSDRSLRVDVRVIAATN 330 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcC--C-EeeCCCCcceecceEEEEecC
Confidence 6778888 33332 33445689999999999999999999999999 5 4332 2222223455999999
Q ss_pred CChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCH
Q 036633 353 LKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPST 430 (550)
Q Consensus 353 ~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~ 430 (550)
........ .+.|+++|++|+. ++++. .|||.+ +|+..++..++.++..++... .+.+++
T Consensus 331 ~~l~~~~~--------------~~~f~~dL~~rl~-~~~i~-lPpLreR~eDI~~L~~~fl~~~~~~~~~~---~~~~s~ 391 (509)
T PRK05022 331 RDLREEVR--------------AGRFRADLYHRLS-VFPLS-VPPLRERGDDVLLLAGYFLEQNRARLGLR---SLRLSP 391 (509)
T ss_pred CCHHHHHH--------------cCCccHHHHhccc-ccEee-CCCchhchhhHHHHHHHHHHHHHHHcCCC---CCCCCH
Confidence 87654433 5789999999994 55555 348876 899999999999887765433 458999
Q ss_pred HHHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccc-cCCCCCCCcccccc--ccc
Q 036633 431 SALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTE-LGGGGGGGVEYWWE--EST 507 (550)
Q Consensus 431 ~a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~-l~~dk~g~~~y~~~--~~~ 507 (550)
++++.|..+.|| | |+|+|+++|++ .+... .+... +....|+... .+.... ........ ..+ .+.
T Consensus 392 ~a~~~L~~y~WP--G-NvrEL~~~i~r-a~~~~--~~~~~-~~~~~i~~~~---l~~~~~~~~~~~~~~---~~~~~~~~ 458 (509)
T PRK05022 392 AAQAALLAYDWP--G-NVRELEHVISR-AALLA--RARGA-GRIVTLEAQH---LDLPAEVALPPPEAA---AAPAAVVS 458 (509)
T ss_pred HHHHHHHhCCCC--C-cHHHHHHHHHH-HHHhc--CCCcc-CccceecHHH---cCcccccccCccccc---cccccccc
Confidence 999999999987 8 99999999997 21111 11100 0011222221 111000 00000000 000 000
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633 508 ----EGLSLEELKKYMDSLEALRNNVAIKLEEMMMRRAC 542 (550)
Q Consensus 508 ----~~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~~ 542 (550)
..+...|.+.+..+|++..+|....|+.|.|.+.+
T Consensus 459 ~~l~~~~~~~Er~~I~~aL~~~~gn~~~aA~~LGisr~t 497 (509)
T PRK05022 459 QNLREATEAFQRQLIRQALAQHQGNWAAAARALELDRAN 497 (509)
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHH
Confidence 11223467778899999999999999999988753
No 22
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.90 E-value=4.9e-23 Score=209.51 Aligned_cols=221 Identities=17% Similarity=0.213 Sum_probs=159.0
Q ss_pred CcccCcHHHHH---HHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633 206 KRVFGQNDAID---VIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE 282 (550)
Q Consensus 206 ~~viGQ~~ai~---~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~ 282 (550)
..|+||++.+. -+.+++... +..+++||||||||||++|+.||..... +|..++....
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~-----------~l~SmIl~GPPG~GKTTlA~liA~~~~~------~f~~~sAv~~-- 84 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAG-----------HLHSMILWGPPGTGKTTLARLIAGTTNA------AFEALSAVTS-- 84 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcC-----------CCceeEEECCCCCCHHHHHHHHHHhhCC------ceEEeccccc--
Confidence 56999999983 333344332 4479999999999999999999998776 8999885433
Q ss_pred hhhhhhHHhHHHHHHHh---CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633 283 LESIKHFFDSLAALVKK---RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY 359 (550)
Q Consensus 283 ~~~~s~liG~lt~al~~---~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~ 359 (550)
.+..+-..+.++-.. ....|||+|||++++...|+.||..+|+| . + ++|-+|.-.
T Consensus 85 --gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G--~-i------------ilIGATTEN----- 142 (436)
T COG2256 85 --GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENG--T-I------------ILIGATTEN----- 142 (436)
T ss_pred --cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCC--e-E------------EEEeccCCC-----
Confidence 233333333333222 22469999999999999999999999999 6 2 244444322
Q ss_pred HhhhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHH
Q 036633 360 EVMLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIA 437 (550)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~ 437 (550)
+.| +|+++||+ .++.|. ||+.+++.+++.+.+....+.+... .+.++++++++|+
T Consensus 143 ----------------PsF~ln~ALlSR~-~vf~lk---~L~~~di~~~l~ra~~~~~rgl~~~---~~~i~~~a~~~l~ 199 (436)
T COG2256 143 ----------------PSFELNPALLSRA-RVFELK---PLSSEDIKKLLKRALLDEERGLGGQ---IIVLDEEALDYLV 199 (436)
T ss_pred ----------------CCeeecHHHhhhh-heeeee---cCCHHHHHHHHHHHHhhhhcCCCcc---cccCCHHHHHHHH
Confidence 355 89999999 899999 9999999999999776655544333 4579999999999
Q ss_pred hcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCccccc
Q 036633 438 SNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWW 503 (550)
Q Consensus 438 ~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~ 503 (550)
..+. | -+|..-+.++- .....+ . +..+ +.+..+++.+.....+|++|+.||+.
T Consensus 200 ~~s~---G-D~R~aLN~LE~-----~~~~~~--~-~~~~-~~~~l~~~l~~~~~~~Dk~gD~hYdl 252 (436)
T COG2256 200 RLSN---G-DARRALNLLEL-----AALSAE--P-DEVL-ILELLEEILQRRSARFDKDGDAHYDL 252 (436)
T ss_pred HhcC---c-hHHHHHHHHHH-----HHHhcC--C-Cccc-CHHHHHHHHhhhhhccCCCcchHHHH
Confidence 8643 3 22655555542 111111 1 2233 37788888888899999999999975
No 23
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.90 E-value=4e-23 Score=214.85 Aligned_cols=250 Identities=17% Similarity=0.187 Sum_probs=185.6
Q ss_pred HHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCC----CcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCce
Q 036633 197 YMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS----SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHL 272 (550)
Q Consensus 197 l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~----~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~l 272 (550)
...+...|++.|+||++|++.++.+++... .+.++. .+..|.++||+||||||||++|++||+.+.. +|
T Consensus 6 p~~I~~~Ld~~IiGQe~AkkalavAl~~~~-~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~------~f 78 (443)
T PRK05201 6 PREIVSELDKYIIGQDDAKRAVAIALRNRW-RRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA------PF 78 (443)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHHH-HHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC------hh
Confidence 356778999999999999999999996520 034333 2234689999999999999999999999877 99
Q ss_pred eEEecCCCCchhhhh----hHHh--------------------------------H------------------------
Q 036633 273 IHFDMGNYTELESIK----HFFD--------------------------------S------------------------ 292 (550)
Q Consensus 273 i~id~s~~~~~~~~s----~liG--------------------------------~------------------------ 292 (550)
+++||++|.+...+. .++- .
T Consensus 79 i~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~ 158 (443)
T PRK05201 79 IKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQK 158 (443)
T ss_pred eeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHH
Confidence 999999887632211 0000 0
Q ss_pred --------------------------------------------------------------------------------
Q 036633 293 -------------------------------------------------------------------------------- 292 (550)
Q Consensus 293 -------------------------------------------------------------------------------- 292 (550)
T Consensus 159 ~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~ 238 (443)
T PRK05201 159 FRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEE 238 (443)
T ss_pred HHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHH
Confidence
Q ss_pred -HHHHHHh-CCCCeEEeccccccC------------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHH
Q 036633 293 -LAALVKK-RPYSVVLFDKIEKAN------------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQV 358 (550)
Q Consensus 293 -lt~al~~-~p~~VlllDEIeka~------------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~ 358 (550)
..+++.. ...+|||||||||.. ..||..||++++.. . +.-.-..||..|.+||++.-+.....
T Consensus 239 v~~~ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~--~-v~~k~~~i~T~~ILFI~~GAF~~~kp 315 (443)
T PRK05201 239 IKQEAIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGS--T-VSTKYGMVKTDHILFIASGAFHVSKP 315 (443)
T ss_pred HHHHHHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccc--e-eeecceeEECCceeEEecCCcCCCCh
Confidence 0112222 246899999999974 35999999999866 3 32234479999999999765432100
Q ss_pred HHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHH----HHHHHHHHHHhccCCCccccCCHHHHH
Q 036633 359 YEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLR----EWACEETKRRNNDSKAVIVCPSTSALV 434 (550)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~----~~~l~~~~~~l~~~~~~~l~~~~~a~~ 434 (550)
.-+-|+|.+|++.++.+. ||+.+++..|+ ...+.++...+...|+ .|.|++++++
T Consensus 316 -----------------~DlIPEl~GR~Pi~v~L~---~L~~~dL~~ILteP~nsLikQy~~Lf~~egv-~L~Ftd~Al~ 374 (443)
T PRK05201 316 -----------------SDLIPELQGRFPIRVELD---ALTEEDFVRILTEPKASLIKQYQALLATEGV-TLEFTDDAIR 374 (443)
T ss_pred -----------------hhccHHHhCccceEEECC---CCCHHHHHHHhcCChhHHHHHHHHHHhhcCc-EEEEcHHHHH
Confidence 125699999999999999 99999999999 5567777777778899 9999999999
Q ss_pred HHHhcCc------ccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccc
Q 036633 435 HIASNAA------RKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKE 480 (550)
Q Consensus 435 ~L~~~~~------~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~ 480 (550)
+|++.++ .+.|| |.|+.++++ .|.+..+...-..+..+.|+..
T Consensus 375 ~IA~~A~~~N~~~~~iGA--R~LrtI~E~-~L~d~~Fe~p~~~~~~v~I~~~ 423 (443)
T PRK05201 375 RIAEIAYQVNEKTENIGA--RRLHTVMEK-LLEDISFEAPDMSGETVTIDAA 423 (443)
T ss_pred HHHHHHHHhcccccccch--hhHHHHHHH-HHHHHhccCCCCCCCEEEECHH
Confidence 9998765 37899 999999996 6776666544333444545444
No 24
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.90 E-value=1.6e-22 Score=220.18 Aligned_cols=275 Identities=15% Similarity=0.157 Sum_probs=197.4
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHH--------hccCCCCCCceeEEec
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANE--------LYDNNDNDNHLIHFDM 277 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~--------l~~~~~~~~~li~id~ 277 (550)
..++|++.++..+...+.+. ...+.++|+.|+|||||+.+|++|+.. ..+ .+.||+.+||
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~---------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r---~~~pfv~inC 286 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLY---------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGK---KSHPFVAVNC 286 (538)
T ss_pred hheeeCCHHHHHHHHHHHHH---------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCcc---CCCCeEEeec
Confidence 34999999999999999876 113379999999999999999999998 555 6789999999
Q ss_pred CCCCchhhhhhHHh----HHHHHH--------HhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-C---CeEee
Q 036633 278 GNYTELESIKHFFD----SLAALV--------KKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-G---IAAFD 341 (550)
Q Consensus 278 s~~~~~~~~s~liG----~lt~al--------~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~---g~~vd 341 (550)
+.+.+....+.||| .+|++. ....+++||||||+.+++.+|..|+++++++ . +.. + ...+|
T Consensus 287 aal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~--~-~~r~G~~~~~~~d 363 (538)
T PRK15424 287 GAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEK--E-VTRVGGHQPVPVD 363 (538)
T ss_pred ccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcC--e-EEecCCCceeccc
Confidence 99998877888998 555543 2344689999999999999999999999999 5 433 2 23344
Q ss_pred cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhc
Q 036633 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNN 419 (550)
Q Consensus 342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~ 419 (550)
+.||++||........ .+.|+++|++|++ ++.+. .|||.+ +|+..++..+|.+....+
T Consensus 364 ---vRiIaat~~~L~~~v~--------------~g~Fr~dL~yrL~-~~~I~-lPPLReR~eDI~~L~~~fl~~~~~~~- 423 (538)
T PRK15424 364 ---VRVISATHCDLEEDVR--------------QGRFRRDLFYRLS-ILRLQ-LPPLRERVADILPLAESFLKQSLAAL- 423 (538)
T ss_pred ---eEEEEecCCCHHHHHh--------------cccchHHHHHHhc-CCeec-CCChhhchhHHHHHHHHHHHHHHHHc-
Confidence 4599999987655443 4689999999994 55555 348876 899999999998865543
Q ss_pred cCCCccccCCHHHH-------HHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccC
Q 036633 420 DSKAVIVCPSTSAL-------VHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELG 492 (550)
Q Consensus 420 ~~~~~~l~~~~~a~-------~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~ 492 (550)
+. .++++++ +.|..+.|| | |+|+|+++|++ .+. +.++. .. ..++.....+.+... .
T Consensus 424 --~~---~~~~~a~~~~~~a~~~L~~y~WP--G-NvREL~nvier-~~i--~~~~~--~~--~~i~~~~l~~~~~~~--~ 486 (538)
T PRK15424 424 --SA---PFSAALRQGLQQCETLLLHYDWP--G-NVRELRNLMER-LAL--FLSVE--PT--PDLTPQFLQLLLPEL--A 486 (538)
T ss_pred --CC---CCCHHHHHhhHHHHHHHHhCCCC--c-hHHHHHHHHHH-HHH--hcCCC--Cc--CccCHHHhhhhcccc--c
Confidence 22 3555554 788888887 8 99999999997 111 11111 00 112222111111100 0
Q ss_pred CCCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633 493 GGGGGGVEYWWEESTEGLSLEELKKYMDSLEALRNNVAIKLEEMMMRRAC 542 (550)
Q Consensus 493 ~dk~g~~~y~~~~~~~~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~~ 542 (550)
.. . ........+.+.+..+|++..+|....|+.|.+.+.+
T Consensus 487 -~~--~-------~~~~~~~~Er~~I~~~L~~~~Gn~~~aA~~LGIsRtT 526 (538)
T PRK15424 487 -RE--S-------AKTPAPRLLAATLQQALERFNGDKTAAANYLGISRTT 526 (538)
T ss_pred -cc--c-------cccchhHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHH
Confidence 00 0 0001123577789999999999999999999998754
No 25
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=1.5e-22 Score=205.61 Aligned_cols=224 Identities=17% Similarity=0.214 Sum_probs=161.3
Q ss_pred HHHHHHhhhhcCcccCcHHHHHHHHHHHhcch----hhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCC
Q 036633 195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPK----AAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DND 269 (550)
Q Consensus 195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~----~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~ 269 (550)
..+..+.+.|...++|++.++++|.+.+.... ....|+..++.+.+++|+||||||||++|+++|+.++..+ ...
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~ 91 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKK 91 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 44778889999999999999988766543210 0145766554347899999999999999999999986533 233
Q ss_pred CceeEEecCCCCchhhhhhHHh----HHHHHHHhCCCCeEEecccccc---------CHHHHHHHHHhhhhccccccccC
Q 036633 270 NHLIHFDMGNYTELESIKHFFD----SLAALVKKRPYSVVLFDKIEKA---------NSSILNLLLKILKTDFNRKATRG 336 (550)
Q Consensus 270 ~~li~id~s~~~~~~~~s~liG----~lt~al~~~p~~VlllDEIeka---------~~~v~~~Ll~~ld~g~~~~l~d~ 336 (550)
.+++.++++++ ++.++| ...+.+.+..++||||||++.+ .+++++.|++.++++ +
T Consensus 92 ~~~~~v~~~~l-----~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~--~----- 159 (287)
T CHL00181 92 GHLLTVTRDDL-----VGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ--R----- 159 (287)
T ss_pred CceEEecHHHH-----HHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC--C-----
Confidence 46888886543 334444 2234455566789999999975 578999999999987 5
Q ss_pred CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHH
Q 036633 337 IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKR 416 (550)
Q Consensus 337 g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~ 416 (550)
.+++||++++... +.. + -.++|+|.+||+.+|.|. |++.+++..|+..++.+.
T Consensus 160 ------~~~~vI~ag~~~~--~~~-------------~-~~~np~L~sR~~~~i~F~---~~t~~el~~I~~~~l~~~-- 212 (287)
T CHL00181 160 ------DDLVVIFAGYKDR--MDK-------------F-YESNPGLSSRIANHVDFP---DYTPEELLQIAKIMLEEQ-- 212 (287)
T ss_pred ------CCEEEEEeCCcHH--HHH-------------H-HhcCHHHHHhCCceEEcC---CcCHHHHHHHHHHHHHHh--
Confidence 5677888766421 100 0 123699999999999999 999999999999999762
Q ss_pred HhccCCCccccCCHH----HHHHHHhcCc-ccCCCcccHHHHHHcc--hhhHHHHHh
Q 036633 417 RNNDSKAVIVCPSTS----ALVHIASNAA-RKYGQNGEGLKRWMDQ--RPSADHVID 466 (550)
Q Consensus 417 ~l~~~~~~~l~~~~~----a~~~L~~~~~-~~~GaN~R~L~~~i~~--~~la~~~l~ 466 (550)
+. .++++ +.+++...++ +.+| |+|.+++++++ ..-+..++.
T Consensus 213 -----~~---~l~~~~~~~L~~~i~~~~~~~~~G-NaR~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 213 -----QY---QLTPEAEKALLDYIKKRMEQPLFA-NARSVRNALDRARMRQANRIFE 260 (287)
T ss_pred -----cC---CCChhHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHHHHHHHHHc
Confidence 22 34444 4555555566 7889 99999999998 444444444
No 26
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.89 E-value=2.2e-22 Score=219.23 Aligned_cols=283 Identities=16% Similarity=0.168 Sum_probs=199.6
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++|++.++..+...+.+. ...+.++|+.|++||||+.+|++|+....+ .+.||+.+||+.+.+...
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~---------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r---~~~pfv~inC~~l~e~ll 279 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLY---------ARSDATVLILGESGTGKELVAQAIHQLSGR---RDFPFVAINCGAIAESLL 279 (526)
T ss_pred hheeeCCHHHHHHHHHHHHH---------hCCCCcEEEECCCCcCHHHHHHHHHHhcCc---CCCCEEEeccccCChhHH
Confidence 34999999999999999876 113379999999999999999999998877 788999999999998777
Q ss_pred hhhHHh----HHHHHHH--------hCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-C---CeEeecCCeEEEE
Q 036633 286 IKHFFD----SLAALVK--------KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-G---IAAFDLTNTLIIM 349 (550)
Q Consensus 286 ~s~liG----~lt~al~--------~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~---g~~vd~~~~iiI~ 349 (550)
.+.||| .+|++.+ ...+++||||||+.+++++|..|+++++++ . +.. + ...+|+ .||+
T Consensus 280 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~--~-~~r~g~~~~~~~dv---RiIa 353 (526)
T TIGR02329 280 EAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEER--E-VVRVGGTEPVPVDV---RVVA 353 (526)
T ss_pred HHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcC--c-EEecCCCceeeecc---eEEe
Confidence 888888 5555432 234689999999999999999999999999 5 433 2 333444 4999
Q ss_pred eCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCcccc
Q 036633 350 TSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVC 427 (550)
Q Consensus 350 TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~ 427 (550)
|||........ .+.|+++|++|++ .+.+. .|||.+ +|+..++..+|.++... .++ .
T Consensus 354 at~~~l~~~v~--------------~g~fr~dL~~rL~-~~~I~-lPPLReR~eDI~~L~~~fl~~~~~~---~~~---~ 411 (526)
T TIGR02329 354 ATHCALTTAVQ--------------QGRFRRDLFYRLS-ILRIA-LPPLRERPGDILPLAAEYLVQAAAA---LRL---P 411 (526)
T ss_pred ccCCCHHHHhh--------------hcchhHHHHHhcC-CcEEe-CCCchhchhHHHHHHHHHHHHHHHH---cCC---C
Confidence 99987655433 4689999999995 44444 338876 89999999999887654 233 5
Q ss_pred CCHHHHHH-------HHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCcc
Q 036633 428 PSTSALVH-------IASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVE 500 (550)
Q Consensus 428 ~~~~a~~~-------L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~ 500 (550)
++++++.. |..+.|| | |+|.|++++++ .+.. .. ...++. |+.+.....+...... .....
T Consensus 412 ~~~~a~~~~~~~~~~L~~y~WP--G-NvrEL~nvier-~~i~--~~--~~~~~~--I~~~~l~~~~~~~~~~-~~~~~-- 478 (526)
T TIGR02329 412 DSEAAAQVLAGVADPLQRYPWP--G-NVRELRNLVER-LALE--LS--AMPAGA--LTPDVLRALAPELAEA-SGKGK-- 478 (526)
T ss_pred CCHHHHHHhHHHHHHHHhCCCC--c-hHHHHHHHHHH-HHHh--cc--cCCCCc--cCHHHhhhhchhhccc-ccccc--
Confidence 89999888 9998887 8 99999999997 1111 00 001111 2222211111110000 00000
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633 501 YWWEESTEGLSLEELKKYMDSLEALRNNVAIKLEEMMMRRAC 542 (550)
Q Consensus 501 y~~~~~~~~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~~ 542 (550)
....+-..+...|.+.+..+|++..+|....|+.|.+.+.+
T Consensus 479 -~~~~~l~~~~~~Er~~I~~aL~~~~Gn~~~aA~~LGIsRtT 519 (526)
T TIGR02329 479 -TSALSLRERSRVEALAVRAALERFGGDRDAAAKALGISRTT 519 (526)
T ss_pred -cCccchHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHH
Confidence 00000011223466678899999999999999999998754
No 27
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.89 E-value=2.1e-22 Score=226.93 Aligned_cols=280 Identities=18% Similarity=0.146 Sum_probs=203.9
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++|++.++..+...+.+. . ..+.+++|+|++||||+.+|++|+....+ ...||+.+||+.+++..-
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~---a------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r---~~~pfv~vnc~~~~~~~~ 392 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQA---A------KSSFPVLLCGEEGVGKALLAQAIHNESER---AAGPYIAVNCQLYPDEAL 392 (638)
T ss_pred cceEECCHHHHHHHHHHHHH---h------CcCCCEEEECCCCcCHHHHHHHHHHhCCc---cCCCeEEEECCCCChHHH
Confidence 46899999999999988876 1 12367999999999999999999999887 778999999999988776
Q ss_pred hhhHHhHHHH--------HHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC----CeEeecCCeEEEEeCCC
Q 036633 286 IKHFFDSLAA--------LVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG----IAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 286 ~s~liG~lt~--------al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~----g~~vd~~~~iiI~TsN~ 353 (550)
.+.|+|..+. .+....+++||||||+.+++++|..|++++++| . ++.. ...+|++ ||+|||.
T Consensus 393 ~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~--~-~~~~~~~~~~~~~~r---iI~~t~~ 466 (638)
T PRK11388 393 AEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTG--V-ITRLDSRRLIPVDVR---VIATTTA 466 (638)
T ss_pred HHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcC--c-EEeCCCCceEEeeEE---EEEeccC
Confidence 7788884321 233345689999999999999999999999999 5 5432 2345554 9999998
Q ss_pred ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
+...... .+.|+++|++|+ ..+.+. .|||.+ +|+..++..++.++..++ +. .+.++++
T Consensus 467 ~l~~~~~--------------~~~f~~dL~~~l-~~~~i~-lPpLreR~~Di~~L~~~~l~~~~~~~---~~-~~~~s~~ 526 (638)
T PRK11388 467 DLAMLVE--------------QNRFSRQLYYAL-HAFEIT-IPPLRMRREDIPALVNNKLRSLEKRF---ST-RLKIDDD 526 (638)
T ss_pred CHHHHHh--------------cCCChHHHhhhh-ceeEEe-CCChhhhhhHHHHHHHHHHHHHHHHh---CC-CCCcCHH
Confidence 7654433 478999999999 455655 348876 799999999999876654 33 4579999
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhcccccccc--CCCCCCCcccccccccCC
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTEL--GGGGGGGVEYWWEESTEG 509 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l--~~dk~g~~~y~~~~~~~~ 509 (550)
+++.|..+.|| | |+|+|++++++ .+.. . ++..+ +.+ +++..... ....... -... ....
T Consensus 527 a~~~L~~y~WP--G-NvreL~~~l~~-~~~~--~-----~~~~i--~~~---~lp~~~~~~~~~~~~~~--~~~~-~~~~ 587 (638)
T PRK11388 527 ALARLVSYRWP--G-NDFELRSVIEN-LALS--S-----DNGRI--RLS---DLPEHLFTEQATDDVSA--TRLS-TSLS 587 (638)
T ss_pred HHHHHHcCCCC--C-hHHHHHHHHHH-HHHh--C-----CCCee--cHH---HCchhhhcccccccccc--cccc-cchh
Confidence 99999999997 8 99999999996 2211 1 12222 222 22211100 0000000 0000 0112
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633 510 LSLEELKKYMDSLEALRNNVAIKLEEMMMRRAC 542 (550)
Q Consensus 510 lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~~ 542 (550)
+...|.+.+..+|++.++|+...|+.|.+.+.+
T Consensus 588 l~~~E~~~i~~al~~~~gn~~~aA~~LGisR~T 620 (638)
T PRK11388 588 LAELEKEAIINAAQVCGGRIQEMAALLGIGRTT 620 (638)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHH
Confidence 344577788999999999999999999998754
No 28
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.88 E-value=3e-22 Score=208.12 Aligned_cols=301 Identities=17% Similarity=0.144 Sum_probs=197.5
Q ss_pred HhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 200 VQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 200 l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
+.......+||.+....++.+.++.. +....++|+.|+|||||+.+|+.|+....+. ...|||.+||+.
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~---------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~--~~~PFI~~NCa~ 140 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAY---------APSGLPVLIIGETGTGKELFARLIHALSARR--AEAPFIAFNCAA 140 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHhh---------CCCCCcEEEecCCCccHHHHHHHHHHhhhcc--cCCCEEEEEHHH
Confidence 33444567999999999999999976 1122799999999999999999999554441 478999999999
Q ss_pred CCchhhhhhHHh----HHHHHHHhCC-------CCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEE
Q 036633 280 YTELESIKHFFD----SLAALVKKRP-------YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLI 347 (550)
Q Consensus 280 ~~~~~~~s~liG----~lt~al~~~p-------~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~ii 347 (550)
|+++...+.||| .||++...++ ++++|||||+.+++..|..|++++|+|.++++... ...+|++ +
T Consensus 141 ~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVR---l 217 (403)
T COG1221 141 YSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVR---L 217 (403)
T ss_pred hCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCce---e
Confidence 999999999999 7777655444 58999999999999999999999999943333333 4555555 9
Q ss_pred EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhc-cceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCc
Q 036633 348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLL-DKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAV 424 (550)
Q Consensus 348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Ri-d~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~ 424 (550)
|++||........ .. .+|..|+ ..+|..+ ||.+ +|+..++..++.....++...
T Consensus 218 i~AT~~~l~~~~~---------------~g--~dl~~rl~~~~I~LP---pLrER~~Di~~L~e~Fl~~~~~~l~~~--- 274 (403)
T COG1221 218 ICATTEDLEEAVL---------------AG--ADLTRRLNILTITLP---PLRERKEDILLLAEHFLKSEARRLGLP--- 274 (403)
T ss_pred eeccccCHHHHHH---------------hh--cchhhhhcCceecCC---ChhhchhhHHHHHHHHHHHHHHHcCCC---
Confidence 9999875432211 11 4788844 4445555 8865 889999999998877775332
Q ss_pred cccCCHHHHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCC-Cccccc
Q 036633 425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGG-GVEYWW 503 (550)
Q Consensus 425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g-~~~y~~ 503 (550)
....++++...|..+.|| | |+|+|++.|++ .++..-..+...+. ..+... ....+........... ....+.
T Consensus 275 ~~~~~~~a~~~L~~y~~p--G-NirELkN~Ve~-~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 347 (403)
T COG1221 275 LSVDSPEALRALLAYDWP--G-NIRELKNLVER-AVAQASGEGQDLED--LIISIR-LDELPGLNDVPAGISLQLNLPEL 347 (403)
T ss_pred CCCCCHHHHHHHHhCCCC--C-cHHHHHHHHHH-HHHHhccccCCccc--ccchhh-hccccccccchhhhhhhhhhHHH
Confidence 123446999999998886 8 99999999997 44433222211111 111110 0001100000000000 001122
Q ss_pred ccccCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 036633 504 EESTEGLSLEELK--KYMDSLEALRNNVAIKLEEMMMRRACER 544 (550)
Q Consensus 504 ~~~~~~lsl~ele--q~~~ale~l~~nl~~~a~~l~~~~~~~~ 544 (550)
..+.........+ .+..+++....+....+..+.+...+-.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~s~~~l~ 390 (403)
T COG1221 348 PLSLRETSLEQVEERLLQKALEQNKGNKKKAARLLGISRKTLR 390 (403)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhccHHHHHHHcCCCHHHHH
Confidence 2222222223333 4667888888888888888777665433
No 29
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.6e-22 Score=196.87 Aligned_cols=253 Identities=21% Similarity=0.240 Sum_probs=184.8
Q ss_pred HHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcC------CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCC
Q 036633 197 YMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRR------QL-GLFLFAGPNCSGKAELAKAIANELYDNNDND 269 (550)
Q Consensus 197 l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~------~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~ 269 (550)
-..+...|++.||||+.|++.++-+++.+ +..+.... -. .++|+.||||+|||.||+.||+.|.-
T Consensus 52 P~eik~~Ld~YVIGQe~AKKvLsVAVYNH---YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnV----- 123 (408)
T COG1219 52 PKEIKAHLDEYVIGQEQAKKVLSVAVYNH---YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNV----- 123 (408)
T ss_pred hHHHHHHhhhheecchhhhceeeeeehhH---HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCC-----
Confidence 45788899999999999999888877765 44443221 11 68999999999999999999999988
Q ss_pred CceeEEecCCCCchhhhhhHHh----HHHHH----HHhCCCCeEEeccccccC--------------HHHHHHHHHhhhh
Q 036633 270 NHLIHFDMGNYTELESIKHFFD----SLAAL----VKKRPYSVVLFDKIEKAN--------------SSILNLLLKILKT 327 (550)
Q Consensus 270 ~~li~id~s~~~~~~~~s~liG----~lt~a----l~~~p~~VlllDEIeka~--------------~~v~~~Ll~~ld~ 327 (550)
||.--|+..+++..++..-+- .|..+ +.+...++|++|||||.. ..||++||++++.
T Consensus 124 -PFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 124 -PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred -CeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 999999999988877543332 22221 334456899999999975 3699999999975
Q ss_pred ccccccccC-Ce--------EeecCCeEEEEeCCC-ChHHHHHhhhh--------h-----hH---hhHH------HHhc
Q 036633 328 DFNRKATRG-IA--------AFDLTNTLIIMTSDL-KDEQVYEVMLT--------A-----TY---GRVN------EVTG 375 (550)
Q Consensus 328 g~~~~l~d~-g~--------~vd~~~~iiI~TsN~-g~~~~~~~~~~--------~-----~~---~~~~------~~l~ 375 (550)
-... +.-. || .+|.+|.+||+..-+ |.+.+.....+ + .. ..+. +.++
T Consensus 203 Tvas-VPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvk 281 (408)
T COG1219 203 TVAS-VPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVK 281 (408)
T ss_pred ceec-cCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHH
Confidence 4222 4443 55 488899988886544 55555432210 0 00 1111 2223
Q ss_pred cCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHH----hccCCCccccCCHHHHHHHHhcCc-ccCCCcccH
Q 036633 376 SLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRR----NNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEG 450 (550)
Q Consensus 376 ~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~----l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~ 450 (550)
=.+-|+|++|++.+..+. +|+.+++.+|+..--+.+..+ +.-.++ .|.|+++|+..++..+. ...|| |+
T Consensus 282 FGLIPEfIGRlPvia~L~---~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V-~L~F~~~AL~~IA~~A~~rkTGA--RG 355 (408)
T COG1219 282 FGLIPEFIGRLPVIATLE---ELDEDALVQILTEPKNALVKQYQKLFEMDGV-ELEFTEEALKAIAKKAIERKTGA--RG 355 (408)
T ss_pred cCCcHHHhcccceeeehh---hcCHHHHHHHHhcccHHHHHHHHHHhcccCc-eEEEcHHHHHHHHHHHHHhccch--hH
Confidence 335799999999999999 999999999986544444433 344678 99999999999999888 88899 99
Q ss_pred HHHHHcchhhHHHHHh
Q 036633 451 LKRWMDQRPSADHVID 466 (550)
Q Consensus 451 L~~~i~~~~la~~~l~ 466 (550)
|+.+++. .+-+.++.
T Consensus 356 LRsI~E~-~lld~Mfe 370 (408)
T COG1219 356 LRSIIEE-LLLDVMFE 370 (408)
T ss_pred HHHHHHH-HHHHHHhh
Confidence 9999996 55555554
No 30
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.88 E-value=2.1e-21 Score=197.25 Aligned_cols=212 Identities=16% Similarity=0.199 Sum_probs=154.5
Q ss_pred HHHHhhhhcCcccCcHHHHHHHHHHHhcch----hhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC-CCCC
Q 036633 197 YMRVQGRLKKRVFGQNDAIDVIFEALTKPK----AAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN-DNDN 270 (550)
Q Consensus 197 l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~----~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~ 270 (550)
++++...|.+.++|.+++++.|.+.+.... ..+.|+.. ..| .+++|+||||||||++|+++|+.++..+ ....
T Consensus 13 ~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~ 91 (284)
T TIGR02880 13 ITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKG 91 (284)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc
Confidence 556667777889999999988766543210 01456643 346 6999999999999999999999886532 1234
Q ss_pred ceeEEecCCCCchhhhhhHHh----HHHHHHHhCCCCeEEecccccc---------CHHHHHHHHHhhhhccccccccCC
Q 036633 271 HLIHFDMGNYTELESIKHFFD----SLAALVKKRPYSVVLFDKIEKA---------NSSILNLLLKILKTDFNRKATRGI 337 (550)
Q Consensus 271 ~li~id~s~~~~~~~~s~liG----~lt~al~~~p~~VlllDEIeka---------~~~v~~~Ll~~ld~g~~~~l~d~g 337 (550)
+++.++++++ ++.++| ...+.+.+..++||||||++.+ ++++++.|++.++++ +
T Consensus 92 ~~v~v~~~~l-----~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~--~------ 158 (284)
T TIGR02880 92 HLVSVTRDDL-----VGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ--R------ 158 (284)
T ss_pred eEEEecHHHH-----hHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC--C------
Confidence 7888887654 233444 2334455555689999999976 467899999999987 5
Q ss_pred eEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 036633 338 AAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRR 417 (550)
Q Consensus 338 ~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~ 417 (550)
.+++||++++...... --.++|+|.+||+..|.|+ ||+.+++..|+..++.+
T Consensus 159 -----~~~~vI~a~~~~~~~~----------------~~~~np~L~sR~~~~i~fp---~l~~edl~~I~~~~l~~---- 210 (284)
T TIGR02880 159 -----DDLVVILAGYKDRMDS----------------FFESNPGFSSRVAHHVDFP---DYSEAELLVIAGLMLKE---- 210 (284)
T ss_pred -----CCEEEEEeCCcHHHHH----------------HHhhCHHHHhhCCcEEEeC---CcCHHHHHHHHHHHHHH----
Confidence 5677888776431100 0134899999999999999 99999999999999876
Q ss_pred hccCCCccccCCHHHHHHHHhc----Cc-ccCCCcccHHHHHHcc
Q 036633 418 NNDSKAVIVCPSTSALVHIASN----AA-RKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 418 l~~~~~~~l~~~~~a~~~L~~~----~~-~~~GaN~R~L~~~i~~ 457 (550)
.+. .+++++.+.+..+ ++ +++| |+|.+++++++
T Consensus 211 ---~~~---~l~~~a~~~L~~~l~~~~~~~~~G-N~R~lrn~ve~ 248 (284)
T TIGR02880 211 ---QQY---RFSAEAEEAFADYIALRRTQPHFA-NARSIRNAIDR 248 (284)
T ss_pred ---hcc---ccCHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHH
Confidence 222 4677777776654 44 6679 99999999998
No 31
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.88 E-value=6.4e-22 Score=205.78 Aligned_cols=249 Identities=17% Similarity=0.185 Sum_probs=183.2
Q ss_pred HHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCC----CCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633 198 MRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL----SSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI 273 (550)
Q Consensus 198 ~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl----~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li 273 (550)
..+...|++.|+||++|++.++.+++... .+.++ .....|.++||+||||||||++|++||+.+.. +|+
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~-~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~------~fi 76 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRY-RRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA------PFI 76 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhh-hhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC------eEE
Confidence 35678899999999999999999998530 03333 23335689999999999999999999999977 999
Q ss_pred EEecCCCCchhhhh--------hHHh----------------------------HH------------------------
Q 036633 274 HFDMGNYTELESIK--------HFFD----------------------------SL------------------------ 293 (550)
Q Consensus 274 ~id~s~~~~~~~~s--------~liG----------------------------~l------------------------ 293 (550)
.+|++.|.+...+. .++. .|
T Consensus 77 ~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~ 156 (441)
T TIGR00390 77 KVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAF 156 (441)
T ss_pred EeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHH
Confidence 99988775421110 1100 00
Q ss_pred --------------------------------------------------------------------------------
Q 036633 294 -------------------------------------------------------------------------------- 293 (550)
Q Consensus 294 -------------------------------------------------------------------------------- 293 (550)
T Consensus 157 ~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~ 236 (441)
T TIGR00390 157 RKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEE 236 (441)
T ss_pred HHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHH
Confidence
Q ss_pred --HHHHHh-CCCCeEEeccccccCH------------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHH
Q 036633 294 --AALVKK-RPYSVVLFDKIEKANS------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQV 358 (550)
Q Consensus 294 --t~al~~-~p~~VlllDEIeka~~------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~ 358 (550)
.+|+.. ...+|||+|||||... .||..||++++.. . +.-..-.||..|.+||++.-+....
T Consensus 237 v~~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt--~-v~~k~~~v~T~~ILFI~~GAF~~~k- 312 (441)
T TIGR00390 237 IKQEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGS--T-VNTKYGMVKTDHILFIAAGAFQLAK- 312 (441)
T ss_pred HHHHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCc--e-eeecceeEECCceeEEecCCcCCCC-
Confidence 011112 3468999999999752 5999999999876 3 3323447999999999976543210
Q ss_pred HHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHH----HHHHHHHHHHhccCCCccccCCHHHHH
Q 036633 359 YEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLR----EWACEETKRRNNDSKAVIVCPSTSALV 434 (550)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~----~~~l~~~~~~l~~~~~~~l~~~~~a~~ 434 (550)
-.-+-|||.+|++.++.+. ||+.+++..|+ ...+.++...+...|+ .|.|++++++
T Consensus 313 ----------------p~DlIPEl~GR~Pi~v~L~---~L~~edL~rILteP~nsLikQy~~Lf~~egv-~L~Ftd~Al~ 372 (441)
T TIGR00390 313 ----------------PSDLIPELQGRFPIRVELQ---ALTTDDFERILTEPKNSLIKQYKALMKTEGV-NIEFSDEAIK 372 (441)
T ss_pred ----------------hhhccHHHhCccceEEECC---CCCHHHHHHHhcCChhHHHHHHHHHHhhcCc-EEEEeHHHHH
Confidence 0126799999999999999 99999999999 4566667777777899 9999999999
Q ss_pred HHHhcCc------ccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccc
Q 036633 435 HIASNAA------RKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKE 480 (550)
Q Consensus 435 ~L~~~~~------~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~ 480 (550)
+|++.++ .+.|| |.|+.++++ .|.+..+...-.....+.|+..
T Consensus 373 ~IA~~A~~~N~~~~~iGA--R~LrtilE~-~l~d~~fe~p~~~~~~v~I~~~ 421 (441)
T TIGR00390 373 RIAELAYNVNEKTENIGA--RRLHTVLER-LLEDISFEAPDLSGQNITIDAD 421 (441)
T ss_pred HHHHHHHHhcccccccch--hhHHHHHHH-HHHHHHhcCCCCCCCEEEECHH
Confidence 9998765 37899 999999996 7777766644333444444443
No 32
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.87 E-value=2.1e-21 Score=201.15 Aligned_cols=293 Identities=13% Similarity=0.085 Sum_probs=197.7
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
...++|.+.++..+.+.+.+. ...+.+++++|++||||+.+|++|+....+ ...||+.+||+.+.+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~---------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r---~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL---------APLDKPVLIIGERGTGKELIASRLHYLSSR---WQGPFISLNCAALNENL 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH---------hCCCCCEEEECCCCCcHHHHHHHHHHhCCc---cCCCeEEEeCCCCCHHH
Confidence 356899999999999999877 123378999999999999999999988876 67899999999997655
Q ss_pred hhhhHHh----HHHH-------HHHhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-CCeEeecCCeEEEEeCC
Q 036633 285 SIKHFFD----SLAA-------LVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-GIAAFDLTNTLIIMTSD 352 (550)
Q Consensus 285 ~~s~liG----~lt~-------al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~g~~vd~~~~iiI~TsN 352 (550)
..+.+|| .+++ .+....+++||||||+.+++.+|..|++++++| . +.. ++...--.++.||+||+
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~--~-~~~~g~~~~~~~~~RiI~~s~ 149 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYG--E-LERVGGSQPLQVNVRLVCATN 149 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcC--c-EEeCCCCceeeccEEEEEeCc
Confidence 5566777 1222 234455689999999999999999999999999 5 433 22211113466999998
Q ss_pred CChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc-eeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCC
Q 036633 353 LKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK-LVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPS 429 (550)
Q Consensus 353 ~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~-ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~ 429 (550)
........ .+.|+++|++|+.. .|.++ ||.+ +|+..++..++..+..++... + ...++
T Consensus 150 ~~l~~l~~--------------~g~f~~dL~~~l~~~~i~lP---pLReR~eDI~~L~~~fl~~~~~~~~~~-~-~~~~s 210 (326)
T PRK11608 150 ADLPAMVA--------------EGKFRADLLDRLAFDVVQLP---PLRERQSDIMLMAEHFAIQMCRELGLP-L-FPGFT 210 (326)
T ss_pred hhHHHHHH--------------cCCchHHHHHhcCCCEEECC---ChhhhhhhHHHHHHHHHHHHHHHhCCC-C-CCCCC
Confidence 76554433 47899999999943 44555 8875 899999999998876654322 1 14789
Q ss_pred HHHHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccC--CCCCCCccccccccc
Q 036633 430 TSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELG--GGGGGGVEYWWEEST 507 (550)
Q Consensus 430 ~~a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~--~dk~g~~~y~~~~~~ 507 (550)
++++..|..+.|| | |+|.|++++++ .+.. ..+ +.+.+............... ...........+.+.
T Consensus 211 ~~al~~L~~y~WP--G-NvrEL~~vl~~-a~~~--~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (326)
T PRK11608 211 ERARETLLNYRWP--G-NIRELKNVVER-SVYR--HGT-----SEYPLDNIIIDPFKRRPAEEAIAVSETTSLPTLPLDL 279 (326)
T ss_pred HHHHHHHHhCCCC--c-HHHHHHHHHHH-HHHh--cCC-----CCCchhhcccccccccccccccccccccccccccccH
Confidence 9999999999997 8 99999999997 2111 011 11111000000000000000 000000000000000
Q ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633 508 E-GLSLEELKKYMDSLEALRNNVAIKLEEMMMRRAC 542 (550)
Q Consensus 508 ~-~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~~ 542 (550)
. .+...|...+..+|+...+|+...|+.|.+.+.+
T Consensus 280 ~~~l~~~Er~~I~~aL~~~~gn~~~aA~~LGIsR~t 315 (326)
T PRK11608 280 REWQHQQEKELLQRSLQQAKFNQKRAAELLGLTYHQ 315 (326)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHH
Confidence 0 0123456678899999999999999999988754
No 33
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.87 E-value=6.1e-21 Score=190.52 Aligned_cols=215 Identities=16% Similarity=0.205 Sum_probs=176.6
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++|++..++.+....++. . +.+ +++|+.|.|||||-.+|++-+....+ ..+||+.+||+.+++...
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~---A--mlD----APLLI~GeTGTGKdLlAkaCH~~S~R---~~~pFlalNCA~lPe~~a 271 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKL---A--MLD----APLLITGETGTGKDLLAKACHLASPR---HSKPFLALNCASLPEDAA 271 (511)
T ss_pred HHHhhccHHHHHHHHHHHHh---h--ccC----CCeEEecCCCchHHHHHHHHhhcCcc---cCCCeeEeecCCCchhHh
Confidence 45899999999998888866 1 111 68999999999999999999999998 899999999999999999
Q ss_pred hhhHHhH------HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHH
Q 036633 286 IKHFFDS------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQV 358 (550)
Q Consensus 286 ~s~liG~------lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~ 358 (550)
.|.+||. -.+.+....++.||||||..++|..|..||+++.+|+.+++... ...+|. .+|+||..+...+
T Consensus 272 EsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdV---RVIcatq~nL~~l 348 (511)
T COG3283 272 ESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDV---RVICATQVNLVEL 348 (511)
T ss_pred HHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEE---EEEecccccHHHH
Confidence 9999991 11223334568999999999999999999999999943322222 334544 4999998877666
Q ss_pred HHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHH
Q 036633 359 YEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI 436 (550)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L 436 (550)
.. +..|+.++++|+ ++..++ .|||.+ +|+..+++.++.++.+.+.-- .-.++++...+|
T Consensus 349 v~--------------~g~fReDLfyRL-NVLtl~-~PpLRer~~di~pL~e~Fv~q~s~elg~p---~pkl~~~~~~~L 409 (511)
T COG3283 349 VQ--------------KGKFREDLFYRL-NVLTLN-LPPLRERPQDIMPLAELFVQQFSDELGVP---RPKLAADLLTVL 409 (511)
T ss_pred Hh--------------cCchHHHHHHHh-heeeec-CCccccCcccchHHHHHHHHHHHHHhCCC---CCccCHHHHHHH
Confidence 55 678999999999 688888 558876 899999999999988876433 557899999999
Q ss_pred HhcCcccCCCcccHHHHHHcc
Q 036633 437 ASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 437 ~~~~~~~~GaN~R~L~~~i~~ 457 (550)
..|.|| | |+|.|++.|-+
T Consensus 410 ~~y~Wp--G-NVRqL~N~iyR 427 (511)
T COG3283 410 TRYAWP--G-NVRQLKNAIYR 427 (511)
T ss_pred HHcCCC--c-cHHHHHHHHHH
Confidence 999987 8 99999999997
No 34
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.87 E-value=2.7e-21 Score=212.08 Aligned_cols=215 Identities=14% Similarity=0.126 Sum_probs=170.0
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
+.++|++.++..+...+.+. . ..+.+++++|++||||+.+|++++....+ ...||+.+||+.+.+...
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~---A------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r---~~~pfv~inca~~~~~~~ 271 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKL---A------MLDAPLLITGDTGTGKDLLAYACHLRSPR---GKKPFLALNCASIPDDVV 271 (520)
T ss_pred cceeECCHHHHHHHHHHHHH---h------CCCCCEEEECCCCccHHHHHHHHHHhCCC---CCCCeEEeccccCCHHHH
Confidence 47999999999999988865 1 12257999999999999999999999887 778999999999988777
Q ss_pred hhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633 286 IKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 286 ~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~ 353 (550)
.+.||| .++++ +....+++||||||+.+++.+|..|++++++| . ++.. +...-..++.||+||+.
T Consensus 272 e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~--~-~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 272 ESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG--T-FRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred HHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcC--C-cccCCCCcceeeeeEEEEecCC
Confidence 778887 23222 33345689999999999999999999999999 5 4433 22111234559999988
Q ss_pred ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
....... .+.|+++|++|+. ++.+. .|||.+ +|+..++..++.++..+.... ...++++
T Consensus 349 ~l~~l~~--------------~g~f~~dL~~rL~-~~~i~-lPpLreR~~Di~~L~~~fl~~~~~~~g~~---~~~ls~~ 409 (520)
T PRK10820 349 NLVELVQ--------------KGEFREDLYYRLN-VLTLN-LPPLRDRPQDIMPLTELFVARFADEQGVP---RPKLAAD 409 (520)
T ss_pred CHHHHHH--------------cCCccHHHHhhcC-eeEEe-CCCcccChhHHHHHHHHHHHHHHHHcCCC---CCCcCHH
Confidence 7655443 4789999999994 45555 348876 799999999999877664332 3478999
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++++|..+.|| | |+|.|++++++
T Consensus 410 a~~~L~~y~WP--G-NvreL~nvl~~ 432 (520)
T PRK10820 410 LNTVLTRYGWP--G-NVRQLKNAIYR 432 (520)
T ss_pred HHHHHhcCCCC--C-HHHHHHHHHHH
Confidence 99999999887 8 99999999997
No 35
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.87 E-value=8.5e-21 Score=215.28 Aligned_cols=280 Identities=15% Similarity=0.162 Sum_probs=199.5
Q ss_pred cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh
Q 036633 207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI 286 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~ 286 (550)
.++|++.++..+...+.+. . ..+.+++++||+|||||.+|++|+..... ...+|+.+||+.+.+....
T Consensus 377 ~liG~S~~~~~~~~~~~~~---a------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r---~~~~~v~i~c~~~~~~~~~ 444 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMV---A------QSDSTVLILGETGTGKELIARAIHNLSGR---NNRRMVKMNCAAMPAGLLE 444 (686)
T ss_pred ceeecCHHHHHHHHHHHHH---h------CCCCCEEEECCCCcCHHHHHHHHHHhcCC---CCCCeEEEecccCChhHhh
Confidence 6999999999999988876 1 12369999999999999999999999877 7789999999998766556
Q ss_pred hhHHh----HHH-------HHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCC
Q 036633 287 KHFFD----SLA-------ALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLK 354 (550)
Q Consensus 287 s~liG----~lt-------~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g 354 (550)
+.++| .++ ..+....+++||||||+.+++++|..|++++++| . +... +...-..++.+|+|||..
T Consensus 445 ~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~--~-~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 445 SDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ--E-FERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred hhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhC--C-EEeCCCCCcccceEEEEEeCCCC
Confidence 66777 122 2233445689999999999999999999999999 5 4433 222223456699999987
Q ss_pred hHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHHH
Q 036633 355 DEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTSA 432 (550)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a 432 (550)
...... .+.|+++|++|+. .+.+. .|||.+ +|+..++..++.++..++... ...+++++
T Consensus 522 l~~~~~--------------~~~f~~~L~~~l~-~~~i~-lPpLreR~~Di~~L~~~~l~~~~~~~~~~---~~~~s~~a 582 (686)
T PRK15429 522 LKKMVA--------------DREFRSDLYYRLN-VFPIH-LPPLRERPEDIPLLVKAFTFKIARRMGRN---IDSIPAET 582 (686)
T ss_pred HHHHHH--------------cCcccHHHHhccC-eeEEe-CCChhhhHhHHHHHHHHHHHHHHHHcCCC---CCCcCHHH
Confidence 655433 5789999999994 44454 338865 899999999999887764332 23689999
Q ss_pred HHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCcccccccccCCCCH
Q 036633 433 LVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWWEESTEGLSL 512 (550)
Q Consensus 433 ~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~~~~~~~lsl 512 (550)
++.|..+.|| | |+|.|+++|++ .+. +. .++.+...+ +... ........ . .........
T Consensus 583 l~~L~~y~WP--G-NvrEL~~~i~~-a~~---~~----~~~~i~~~l------~~~~-~~~~~~~~---~-~~~~~~~~~ 640 (686)
T PRK15429 583 LRTLSNMEWP--G-NVRELENVIER-AVL---LT----RGNVLQLSL------PDIT-LPEPETPP---A-ATVVAQEGE 640 (686)
T ss_pred HHHHHhCCCC--C-cHHHHHHHHHH-HHH---hC----CCCcccccC------chhh-cccccccc---c-ccccccHHH
Confidence 9999999887 8 99999999997 211 11 122222211 1100 00000000 0 000011234
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHhhcccC
Q 036633 513 EELKKYMDSLEALRNNVA---IKLEEMMMRRAC 542 (550)
Q Consensus 513 ~eleq~~~ale~l~~nl~---~~a~~l~~~~~~ 542 (550)
.|.+.+..+|++..+|+. ..|+.|.|.+.+
T Consensus 641 ~Er~~I~~aL~~~~gn~~~~~~aA~~LGi~R~t 673 (686)
T PRK15429 641 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTT 673 (686)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHhCCCHHH
Confidence 577788999999999986 899999887753
No 36
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.85 E-value=2.1e-20 Score=202.05 Aligned_cols=282 Identities=15% Similarity=0.141 Sum_probs=199.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++|.+.++..+...+... . ....++++.|++||||+.+|++++..... ...+|+.+||+.+.+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~~---a------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKI---A------PSDITVLLLGESGTGKEVLARALHQLSDR---KDKRFVAINCAAIPENLL 206 (445)
T ss_pred cceeecCHHHHHHHHHHHHH---h------CCCCCEEEECCCCcCHHHHHHHHHHhCCc---CCCCeEEEECCCCChHHH
Confidence 35899999999988888754 1 12257889999999999999999999877 778999999999987766
Q ss_pred hhhHHh----HHHHHH-------HhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-CCeEeecCCeEEEEeCCC
Q 036633 286 IKHFFD----SLAALV-------KKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-GIAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 286 ~s~liG----~lt~al-------~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~g~~vd~~~~iiI~TsN~ 353 (550)
.+.+|| .++.+. ....+++||||||+.+++.+|..|++++++| . +.. ++....-.++.||+||+.
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~--~-~~~~~~~~~~~~~~rii~~~~~ 283 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQER--V-IERLGGREEIPVDVRIVCATNQ 283 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhC--e-EEeCCCCceeeeceEEEEecCC
Confidence 777777 333332 2345689999999999999999999999999 5 433 222222235569999998
Q ss_pred ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
....... .+.|+++|++|+. .+.+. .|||.+ +|+..++..++.++...+... ...++++
T Consensus 284 ~l~~~~~--------------~~~~~~~L~~~l~-~~~i~-lPpLr~R~~Di~~l~~~~l~~~~~~~~~~---~~~~~~~ 344 (445)
T TIGR02915 284 DLKRMIA--------------EGTFREDLFYRIA-EISIT-IPPLRSRDGDAVLLANAFLERFARELKRK---TKGFTDD 344 (445)
T ss_pred CHHHHHH--------------cCCccHHHHHHhc-cceec-CCCchhchhhHHHHHHHHHHHHHHHhCCC---CCCCCHH
Confidence 7654433 4789999999994 44454 337865 899999999999887765333 2478999
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCcccccccccCCCC
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWWEESTEGLS 511 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~~~~~~~ls 511 (550)
++..|..+.|| | |+|+|+++|++ .+. .. .+..+ +.+. ++............ .... ..+.
T Consensus 345 a~~~L~~~~wp--g-NvreL~~~i~~-a~~--~~-----~~~~i--~~~~---l~~~~~~~~~~~~~--~~l~---~~~~ 403 (445)
T TIGR02915 345 ALRALEAHAWP--G-NVRELENKVKR-AVI--MA-----EGNQI--TAED---LGLDARERAETPLE--VNLR---EVRE 403 (445)
T ss_pred HHHHHHhCCCC--C-hHHHHHHHHHH-HHH--hC-----CCCcc--cHHH---cCCccccccccccc--cCHH---HHHH
Confidence 99999999887 8 99999999997 221 11 12222 2221 11000000000000 0000 0122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633 512 LEELKKYMDSLEALRNNVAIKLEEMMMRRAC 542 (550)
Q Consensus 512 l~eleq~~~ale~l~~nl~~~a~~l~~~~~~ 542 (550)
..|.+.+..+|++..+|+...|+.|.+.+.+
T Consensus 404 ~~E~~~i~~al~~~~gn~~~aA~~Lgisr~t 434 (445)
T TIGR02915 404 RAEREAVRKAIARVDGNIARAAELLGITRPT 434 (445)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCHHH
Confidence 3466678899999999999999999998754
No 37
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.85 E-value=7.4e-21 Score=182.44 Aligned_cols=190 Identities=17% Similarity=0.165 Sum_probs=121.4
Q ss_pred HHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 198 MRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 198 ~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
..+...--++++||++.+..+.-.+..+ + ..+.+ .+++|+||||+|||++|+.||+.+.. +|..++
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa---~----~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~------~~~~~s 82 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAA---K----KRGEALDHMLFYGPPGLGKTTLARIIANELGV------NFKITS 82 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHH---H----CTTS---EEEEESSTTSSHHHHHHHHHHHCT--------EEEEE
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHH---H----hcCCCcceEEEECCCccchhHHHHHHHhccCC------CeEecc
Confidence 3555555688999999998876666544 1 12244 79999999999999999999999977 888777
Q ss_pred cCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-C-----eEeecCCeEEEEe
Q 036633 277 MGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-I-----AAFDLTNTLIIMT 350 (550)
Q Consensus 277 ~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g-----~~vd~~~~iiI~T 350 (550)
.+....... +.+.++. + .+..|+|+||||++++.+|+.||.++|+|.+. +.-+ | ..++...-.+|-+
T Consensus 83 g~~i~k~~d---l~~il~~-l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~id-iiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 83 GPAIEKAGD---LAAILTN-L--KEGDILFIDEIHRLNKAQQEILLPAMEDGKID-IIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp CCC--SCHH---HHHHHHT-----TT-EEEECTCCC--HHHHHHHHHHHHCSEEE-EEBSSSSS-BEEEEE----EEEEE
T ss_pred chhhhhHHH---HHHHHHh-c--CCCcEEEEechhhccHHHHHHHHHHhccCeEE-EEeccccccceeeccCCCceEeee
Confidence 655433222 2222332 1 45679999999999999999999999999432 2223 2 3455555445544
Q ss_pred CCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCH
Q 036633 351 SDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPST 430 (550)
Q Consensus 351 sN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~ 430 (550)
|+. ....+++|.+||..+..+. .|+.+++.+|+.+... .. .+.+++
T Consensus 156 TTr---------------------~g~ls~pLrdRFgi~~~l~---~Y~~~el~~Iv~r~a~-------~l---~i~i~~ 201 (233)
T PF05496_consen 156 TTR---------------------AGLLSSPLRDRFGIVLRLE---FYSEEELAKIVKRSAR-------IL---NIEIDE 201 (233)
T ss_dssp ESS---------------------GCCTSHCCCTTSSEEEE-------THHHHHHHHHHCCH-------CT---T-EE-H
T ss_pred ecc---------------------ccccchhHHhhcceecchh---cCCHHHHHHHHHHHHH-------Hh---CCCcCH
Confidence 443 1467889999997666899 9999999999886442 13 568999
Q ss_pred HHHHHHHhcCc
Q 036633 431 SALVHIASNAA 441 (550)
Q Consensus 431 ~a~~~L~~~~~ 441 (550)
++..+|+..+-
T Consensus 202 ~~~~~Ia~rsr 212 (233)
T PF05496_consen 202 DAAEEIARRSR 212 (233)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHHhcC
Confidence 99999999765
No 38
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.85 E-value=1.4e-20 Score=204.89 Aligned_cols=215 Identities=16% Similarity=0.159 Sum_probs=168.8
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++|.+.++..+...+.+. . ....++++.|++|||||.+|++|+....+ ...+|+.+||+.+.+...
T Consensus 138 ~~lig~s~~~~~l~~~~~~~---~------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRL---S------RSSISVLINGESGTGKELVAHALHRHSPR---AKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccceecCHHHHHHHHHHHHH---h------ccCCeEEEEeCCCCcHHHHHHHHHhcCCC---CCCCeEeeeCCCCCHHHH
Confidence 35899999999988888765 1 12268999999999999999999999887 788999999999987766
Q ss_pred hhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633 286 IKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 286 ~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~ 353 (550)
.+.++| .++.+ +....++++|||||+.+++.+|..|++++++| . ++.. |......++.||+||+.
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~--~-~~~~~~~~~~~~~~rii~~~~~ 282 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADG--Q-FYRVGGYAPVKVDVRIIAATHQ 282 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcC--c-EEeCCCCCeEEeeEEEEEeCCC
Confidence 777777 23222 22345689999999999999999999999999 6 5443 32222345669999998
Q ss_pred ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
....... .+.|+++|++|++ .+.+. .|||.+ +|+..++..++.++...+... ...++++
T Consensus 283 ~l~~~~~--------------~~~~~~~L~~~l~-~~~i~-~PpLreR~~Di~~l~~~~l~~~~~~~~~~---~~~~~~~ 343 (469)
T PRK10923 283 NLEQRVQ--------------EGKFREDLFHRLN-VIRVH-LPPLRERREDIPRLARHFLQVAARELGVE---AKLLHPE 343 (469)
T ss_pred CHHHHHH--------------cCCchHHHHHHhc-ceeec-CCCcccchhhHHHHHHHHHHHHHHHcCCC---CCCcCHH
Confidence 7654433 4689999999994 34444 237765 899999999998876654322 2468999
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++..|..+.|| | |+|+|+++|++
T Consensus 344 a~~~L~~~~wp--g-Nv~eL~~~i~~ 366 (469)
T PRK10923 344 TEAALTRLAWP--G-NVRQLENTCRW 366 (469)
T ss_pred HHHHHHhCCCC--C-hHHHHHHHHHH
Confidence 99999999997 8 99999999997
No 39
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.85 E-value=3.7e-20 Score=186.21 Aligned_cols=203 Identities=15% Similarity=0.239 Sum_probs=147.2
Q ss_pred cccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCCCceeEEecCCCC
Q 036633 207 RVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DNDNHLIHFDMGNYT 281 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~~li~id~s~~~ 281 (550)
.++|++.++++|...+.+... .+.|+..++.+.+++|+||||||||++|+++|+.++..+ ....+++.++++.+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 389999999887655433211 145666555558999999999999999999999876432 234467777777653
Q ss_pred chhhhhhHHh----HHHHHHHhCCCCeEEeccccccC--------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEE
Q 036633 282 ELESIKHFFD----SLAALVKKRPYSVVLFDKIEKAN--------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIM 349 (550)
Q Consensus 282 ~~~~~s~liG----~lt~al~~~p~~VlllDEIeka~--------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~ 349 (550)
+.++| .+.+.+.+..++||||||++.+. .++++.|++.++++ . .+.++|+
T Consensus 87 -----~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~--~-----------~~~~vil 148 (261)
T TIGR02881 87 -----GEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN--R-----------NEFVLIL 148 (261)
T ss_pred -----hhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc--C-----------CCEEEEe
Confidence 33344 33445556667899999999865 56889999999887 5 4456777
Q ss_pred eCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 036633 350 TSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPS 429 (550)
Q Consensus 350 TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~ 429 (550)
+++... +.. ...++|+|.+||+..|.|+ +++.+++..|+...+.. .+ ..++
T Consensus 149 a~~~~~--~~~--------------~~~~~p~L~sRf~~~i~f~---~~~~~el~~Il~~~~~~-------~~---~~l~ 199 (261)
T TIGR02881 149 AGYSDE--MDY--------------FLSLNPGLRSRFPISIDFP---DYTVEELMEIAERMVKE-------RE---YKLT 199 (261)
T ss_pred cCCcch--hHH--------------HHhcChHHHhccceEEEEC---CCCHHHHHHHHHHHHHH-------cC---CccC
Confidence 654321 100 0235799999998889999 99999999999988853 33 3789
Q ss_pred HHHHHHHHhcC------c-ccCCCcccHHHHHHcc
Q 036633 430 TSALVHIASNA------A-RKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 430 ~~a~~~L~~~~------~-~~~GaN~R~L~~~i~~ 457 (550)
+++.++|++.. . +.+| |+|.++++++.
T Consensus 200 ~~a~~~l~~~~~~~~~~~~~~~g-n~R~~~n~~e~ 233 (261)
T TIGR02881 200 EEAKWKLREHLYKVDQLSSREFS-NARYVRNIIEK 233 (261)
T ss_pred HHHHHHHHHHHHHHHhccCCCCc-hHHHHHHHHHH
Confidence 99999886531 1 4578 99999999998
No 40
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.83 E-value=5.3e-20 Score=199.89 Aligned_cols=215 Identities=16% Similarity=0.158 Sum_probs=169.8
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++|.+.++..+...+... ...+.++++.|++||||+++|++++....+ ...+|+.+||+.+.+...
T Consensus 134 ~~lig~s~~~~~v~~~i~~~---------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~---~~~~~~~~~c~~~~~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRL---------SRSDITVLINGESGTGKELVARALHRHSPR---ANGPFIALNMAAIPKDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHH---------hCcCCeEEEECCCCCCHHHHHHHHHHhCCC---CCCCeEEEeCCCCCHHHH
Confidence 35899999999988888754 123367899999999999999999999887 788999999999987766
Q ss_pred hhhHHh----HHHHHH-------HhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633 286 IKHFFD----SLAALV-------KKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 286 ~s~liG----~lt~al-------~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~ 353 (550)
.+.++| .++.+. ....+++||||||+.+++++|..|++++++| . ++.. |......++.||+||+.
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~--~-~~~~~~~~~~~~~~rii~~~~~ 278 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADG--E-FYRVGGRTPIKVDVRIVAATHQ 278 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcC--c-EEECCCCceeeeeeEEEEeCCC
Confidence 777777 333332 2344689999999999999999999999999 6 5443 33322335669999998
Q ss_pred ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC--HHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL--DTTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~--~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
..+.... .+.|+++|++|+. .+.+. .|||. .+|+..++..++..+...+... ...++++
T Consensus 279 ~l~~~~~--------------~~~f~~~L~~rl~-~~~i~-lPpLr~R~~Di~~l~~~~l~~~~~~~~~~---~~~~~~~ 339 (463)
T TIGR01818 279 NLEALVR--------------QGKFREDLFHRLN-VIRIH-LPPLRERREDIPRLARHFLALAARELDVE---PKLLDPE 339 (463)
T ss_pred CHHHHHH--------------cCCcHHHHHHHhC-cceec-CCCcccchhhHHHHHHHHHHHHHHHhCCC---CCCcCHH
Confidence 7655443 4689999999995 44555 33888 6899999999999877654332 2478999
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++..|..++|| | |+|.|++++++
T Consensus 340 a~~~L~~~~wp--g-NvreL~~~~~~ 362 (463)
T TIGR01818 340 ALERLKQLRWP--G-NVRQLENLCRW 362 (463)
T ss_pred HHHHHHhCCCC--C-hHHHHHHHHHH
Confidence 99999999987 8 99999999997
No 41
>PRK15115 response regulator GlrR; Provisional
Probab=99.83 E-value=6.9e-20 Score=198.01 Aligned_cols=280 Identities=17% Similarity=0.151 Sum_probs=196.5
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++|.+.++..+...+... .....++++.|++|||||.+|+.++....+ ...+|+.+||+.+.+...
T Consensus 134 ~~lig~s~~~~~~~~~~~~~---------a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r---~~~~f~~i~c~~~~~~~~ 201 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMV---------AQSDVSVLINGQSGTGKEILAQAIHNASPR---ASKPFIAINCGALPEQLL 201 (444)
T ss_pred hcccccCHHHHHHHHHHHhh---------ccCCCeEEEEcCCcchHHHHHHHHHHhcCC---CCCCeEEEeCCCCCHHHH
Confidence 35789998888877777654 112257899999999999999999999887 778999999999987766
Q ss_pred hhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633 286 IKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 286 ~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~ 353 (550)
.+.++| .++++ +....+++||||||+.+++++|..|++++++| . +... +....-.++.||+||+.
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~--~-~~~~g~~~~~~~~~rii~~~~~ 278 (444)
T PRK15115 202 ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQER--K-VRPLGSNRDIDIDVRIISATHR 278 (444)
T ss_pred HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhC--C-EEeCCCCceeeeeEEEEEeCCC
Confidence 677777 22222 22344589999999999999999999999999 5 4322 22222235669999997
Q ss_pred ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
....... .+.|++++++|++ .+.+. .|||.+ +|+..++..++.++....... ...++++
T Consensus 279 ~l~~~~~--------------~~~f~~~l~~~l~-~~~i~-lPpLr~R~eDi~~l~~~~l~~~~~~~~~~---~~~~~~~ 339 (444)
T PRK15115 279 DLPKAMA--------------RGEFREDLYYRLN-VVSLK-IPALAERTEDIPLLANHLLRQAAERHKPF---VRAFSTD 339 (444)
T ss_pred CHHHHHH--------------cCCccHHHHHhhc-eeeec-CCChHhccccHHHHHHHHHHHHHHHhCCC---CCCcCHH
Confidence 6544333 4689999999994 55555 338865 899999999998876654322 2368999
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCcccccccccCCCC
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWWEESTEGLS 511 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~~~~~~~ls 511 (550)
+++.|..+.|| | |+|.|+++|++ .+. +. ++..+ +... ++.... ... .. .+.....+.
T Consensus 340 a~~~L~~~~Wp--g-NvreL~~~i~~-~~~---~~----~~~~i--~~~~---l~~~~~--~~~-~~----~~~~~~~~~ 396 (444)
T PRK15115 340 AMKRLMTASWP--G-NVRQLVNVIEQ-CVA---LT----SSPVI--SDAL---VEQALE--GEN-TA----LPTFVEARN 396 (444)
T ss_pred HHHHHHhCCCC--C-hHHHHHHHHHH-HHH---hC----CCCcc--Chhh---hhhhhc--ccc-cc----cccHHHHHH
Confidence 99999999987 8 99999999997 221 11 12222 2221 111110 000 00 000001122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633 512 LEELKKYMDSLEALRNNVAIKLEEMMMRRAC 542 (550)
Q Consensus 512 l~eleq~~~ale~l~~nl~~~a~~l~~~~~~ 542 (550)
..|...+..+|++..+|+...|+.|.|++.+
T Consensus 397 ~~E~~~i~~al~~~~gn~~~aA~~Lgisr~t 427 (444)
T PRK15115 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTE 427 (444)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCHHH
Confidence 3466678899999999999999999998754
No 42
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.83 E-value=2.4e-19 Score=194.43 Aligned_cols=287 Identities=17% Similarity=0.153 Sum_probs=199.0
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++|++.++..+...+... . ....++++.|++||||+++|++++....+ ...+|+.+||+.+.+...
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~---a------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKI---A------LSQASVLISGESGTGKELIARAIHYNSRR---AKGPFIKVNCAALPESLL 210 (457)
T ss_pred cceecccHHHhHHHHHHHHH---c------CCCcEEEEEcCCCccHHHHHHHHHHhCCC---CCCCeEEEECCCCCHHHH
Confidence 35899999999988887765 1 12268999999999999999999998877 778999999999987776
Q ss_pred hhhHHh----HHHH-------HHHhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-CCeEeecCCeEEEEeCCC
Q 036633 286 IKHFFD----SLAA-------LVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-GIAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 286 ~s~liG----~lt~-------al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~g~~vd~~~~iiI~TsN~ 353 (550)
.+.++| .+++ .+....+++||||||+.+++.+|..|+++++++ . +.. ++...-..++.||+|||.
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~--~-~~~~~~~~~~~~~~rii~~t~~ 287 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQER--E-FERIGGHQTIKVDIRIIAATNR 287 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcC--c-EEeCCCCceeeeceEEEEeCCC
Confidence 777777 2222 223345689999999999999999999999998 5 433 222222235569999998
Q ss_pred ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC--HHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL--DTTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~--~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
....... .+.|++++++|+. .+.+. .|||. .+|+..++..++.++..+.... ...++++
T Consensus 288 ~l~~~~~--------------~g~~~~~l~~~l~-~~~i~-~ppLreR~~di~~l~~~~l~~~~~~~~~~---~~~~~~~ 348 (457)
T PRK11361 288 DLQAMVK--------------EGTFREDLFYRLN-VIHLI-LPPLRDRREDISLLANHFLQKFSSENQRD---IIDIDPM 348 (457)
T ss_pred CHHHHHH--------------cCCchHHHHHHhc-cceec-CCChhhchhhHHHHHHHHHHHHHHHcCCC---CCCcCHH
Confidence 7655443 4789999999994 44444 33776 4899999999999887654332 3578999
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCC-C-CCCcccccccc-cC
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGG-G-GGGVEYWWEES-TE 508 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~d-k-~g~~~y~~~~~-~~ 508 (550)
+++.|..+.|| | |+|.|+++|++ .+.. . +++. |+.. +++........ . .....-.-+.+ ..
T Consensus 349 a~~~L~~~~wp--g-Nv~eL~~~~~~-~~~~---~----~~~~--i~~~---~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 412 (457)
T PRK11361 349 AMSLLTAWSWP--G-NIRELSNVIER-AVVM---N----SGPI--IFSE---DLPPQIRQPVCNAGEVKTAPVGERNLKE 412 (457)
T ss_pred HHHHHHcCCCC--C-cHHHHHHHHHH-HHHh---C----CCCc--ccHH---HChHhhhcccccccccccccccccchhh
Confidence 99999999887 8 99999999997 2211 1 1222 2221 22111100000 0 00000000000 01
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633 509 GLSLEELKKYMDSLEALRNNVAIKLEEMMMRRAC 542 (550)
Q Consensus 509 ~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~~ 542 (550)
.+...|.+.+..+|+...+|....|+.|.|.+.+
T Consensus 413 ~~~~~E~~~i~~al~~~~gn~~~aA~~LGisr~t 446 (457)
T PRK11361 413 EIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRA 446 (457)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHH
Confidence 1234566678899999999999999999998754
No 43
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.82 E-value=4.4e-20 Score=173.04 Aligned_cols=154 Identities=20% Similarity=0.244 Sum_probs=118.3
Q ss_pred ccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhh
Q 036633 208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287 (550)
Q Consensus 208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s 287 (550)
+||.+.++..+.+.+++. ...|.+++++|++||||+.+|++|++...+ .+.||+.+||+.+.+....+
T Consensus 1 liG~s~~m~~~~~~~~~~---------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r---~~~pfi~vnc~~~~~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA---------ASSDLPVLITGETGTGKELLARAIHNNSPR---KNGPFISVNCAALPEELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHH---------TTSTS-EEEECSTTSSHHHHHHHHHHCSTT---TTS-EEEEETTTS-HHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH---------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhc---ccCCeEEEehhhhhcchhhh
Confidence 589999999999999976 124479999999999999999999999888 88899999999999888888
Q ss_pred hHHhH-----------HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCCh
Q 036633 288 HFFDS-----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKD 355 (550)
Q Consensus 288 ~liG~-----------lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~ 355 (550)
.|||. -...+....+++||||||+.+++++|..|++++++| . ++.. +...-..++.||+|||.+.
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~--~-~~~~g~~~~~~~~~RiI~st~~~l 145 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEG--K-FTRLGSDKPVPVDVRIIASTSKDL 145 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHS--E-EECCTSSSEEE--EEEEEEESS-H
T ss_pred hhhccccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhc--h-hccccccccccccceEEeecCcCH
Confidence 89981 125667778899999999999999999999999999 5 4433 2222223566999999877
Q ss_pred HHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeE
Q 036633 356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391 (550)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~ 391 (550)
..... .+.|+++|++|+. +++
T Consensus 146 ~~~v~--------------~g~fr~dLy~rL~-~~~ 166 (168)
T PF00158_consen 146 EELVE--------------QGRFREDLYYRLN-VFT 166 (168)
T ss_dssp HHHHH--------------TTSS-HHHHHHHT-TEE
T ss_pred HHHHH--------------cCCChHHHHHHhc-eEe
Confidence 66554 5799999999994 444
No 44
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.3e-19 Score=183.15 Aligned_cols=253 Identities=21% Similarity=0.227 Sum_probs=177.4
Q ss_pred HHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC------------------------------------cCC---
Q 036633 197 YMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS------------------------------------RRQ--- 237 (550)
Q Consensus 197 l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~------------------------------------~~~--- 237 (550)
-+.+.+.|++.||||+.|++.++-+++.+ +..+.. .++
T Consensus 136 PkeI~~~Ldk~VVGQe~AKKvLsVAVYnH---YkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~ 212 (564)
T KOG0745|consen 136 PKEICEYLDKFVVGQEKAKKVLSVAVYNH---YKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIA 212 (564)
T ss_pred hHHHHHHhhhheechhhhhheeeehhhHH---HHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhc
Confidence 46788999999999999998777666433 111110 000
Q ss_pred ------------C-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-----HHHHH---
Q 036633 238 ------------L-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-----SLAAL--- 296 (550)
Q Consensus 238 ------------p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-----~lt~a--- 296 (550)
- .++|++||||+|||.||+.||+.+.. ||.-.||..++...++..-+- .|++|
T Consensus 213 ~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldV------PfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~n 286 (564)
T KOG0745|consen 213 KALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDV------PFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYN 286 (564)
T ss_pred ccccccccceeeecccEEEECCCCCchhHHHHHHHHHhCC------CeEEecccchhhcccccccHHHHHHHHHHHccCC
Confidence 0 46899999999999999999999988 999999999987766433222 23332
Q ss_pred HHhCCCCeEEeccccccC--------------HHHHHHHHHhhhhcccccc--------ccC-CeEeecCCeEEEEeCCC
Q 036633 297 VKKRPYSVVLFDKIEKAN--------------SSILNLLLKILKTDFNRKA--------TRG-IAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 297 l~~~p~~VlllDEIeka~--------------~~v~~~Ll~~ld~g~~~~l--------~d~-g~~vd~~~~iiI~TsN~ 353 (550)
+.+...+||||||+||+. ..||..||+++|.-.+. + ..+ ...+|.+|.+||+..-+
T Consensus 287 VekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVn-VpeK~~~~~~rgd~vqiDTtnILFiasGAF 365 (564)
T KOG0745|consen 287 VEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVN-VPEKGSRRKPRGDTVQIDTTNILFIASGAF 365 (564)
T ss_pred HHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEc-ccCCCCCCCCCCCeEEEeccceEEEecccc
Confidence 344566899999999875 36999999999754222 2 111 34689999999886432
Q ss_pred -ChHHHHHh-hh-------hh--------------------hHhhHHHHhc------cCCChhhhhhccceeEecCCCCC
Q 036633 354 -KDEQVYEV-ML-------TA--------------------TYGRVNEVTG------SLFKPSLLKLLDKLVVIDLAVPL 398 (550)
Q Consensus 354 -g~~~~~~~-~~-------~~--------------------~~~~~~~~l~------~~f~p~ll~Rid~ii~f~~~~pL 398 (550)
+.+.+... .. .+ .++.+.+.+. -.+-|||++|+..+++|. +|
T Consensus 366 ~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh---~L 442 (564)
T KOG0745|consen 366 VGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLH---SL 442 (564)
T ss_pred cchHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeecc---cc
Confidence 33333211 10 00 0122222222 234799999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHH----hccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcchhhHHHHHh
Q 036633 399 LDTTRLLLREWACEETKRR----NNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQRPSADHVID 466 (550)
Q Consensus 399 ~~e~i~~I~~~~l~~~~~~----l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~~~la~~~l~ 466 (550)
+++++.+++..--+.+..+ +.-.++ .|.|+++|++.|+..+. .+.|| |+|+.++++ .|-+..+.
T Consensus 443 ~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV-~L~fTe~Al~~IAq~Al~r~TGA--RgLRsIlE~-~Lleamfe 511 (564)
T KOG0745|consen 443 DEDQLVRVLTEPKNALGKQYKKLFGMDNV-ELHFTEKALEAIAQLALKRKTGA--RGLRSILES-LLLEAMFE 511 (564)
T ss_pred CHHHHHHHHhcchhhHHHHHHHHhccCCe-eEEecHHHHHHHHHHHHhhccch--HHHHHHHHH-HHhhhccc
Confidence 9999999986544443333 344567 99999999999999888 88899 999999996 55554443
No 45
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.80 E-value=3.9e-19 Score=178.00 Aligned_cols=238 Identities=13% Similarity=0.120 Sum_probs=157.2
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
+.++||++++.. ...++.. ...++-.+++||||||||||++|+.|+..... ....|+.+....- .
T Consensus 138 ~dyvGQ~hlv~q-~gllrs~-------ieq~~ipSmIlWGppG~GKTtlArlia~tsk~---~SyrfvelSAt~a----~ 202 (554)
T KOG2028|consen 138 DDYVGQSHLVGQ-DGLLRSL-------IEQNRIPSMILWGPPGTGKTTLARLIASTSKK---HSYRFVELSATNA----K 202 (554)
T ss_pred HHhcchhhhcCc-chHHHHH-------HHcCCCCceEEecCCCCchHHHHHHHHhhcCC---CceEEEEEecccc----c
Confidence 457788888744 1122111 11123369999999999999999999988755 3333555443222 1
Q ss_pred hhhHHhHHHHHHH----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633 286 IKHFFDSLAALVK----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV 361 (550)
Q Consensus 286 ~s~liG~lt~al~----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~ 361 (550)
+..+-+.+..+-+ .+...|+|+|||++++...|+.||..+++| . + ++|-+||.-++
T Consensus 203 t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G--~-I-----------~lIGATTENPS------ 262 (554)
T KOG2028|consen 203 TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENG--D-I-----------TLIGATTENPS------ 262 (554)
T ss_pred hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccC--c-e-----------EEEecccCCCc------
Confidence 2222232222211 133479999999999999999999999999 5 3 12334443221
Q ss_pred hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc-CCCc--cccCCHHHHHHHHh
Q 036633 362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND-SKAV--IVCPSTSALVHIAS 438 (550)
Q Consensus 362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~-~~~~--~l~~~~~a~~~L~~ 438 (550)
=.++.+|++|| .++++. +|..+++..|+.+.+..+.+.-+. .++. .+.+++.++++|+.
T Consensus 263 --------------Fqln~aLlSRC-~VfvLe---kL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ 324 (554)
T KOG2028|consen 263 --------------FQLNAALLSRC-RVFVLE---KLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAY 324 (554)
T ss_pred --------------cchhHHHHhcc-ceeEec---cCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHH
Confidence 12367899999 899999 999999999999988755533211 1221 34689999999998
Q ss_pred cCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCccccc
Q 036633 439 NAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWW 503 (550)
Q Consensus 439 ~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~ 503 (550)
.+- .++ |.--+.++- .++ +...+-.....+.++.+..++..+..++.||+.|++||+.
T Consensus 325 lsd--GDa--R~aLN~Lem-s~~--m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYnt 382 (554)
T KOG2028|consen 325 LSD--GDA--RAALNALEM-SLS--MFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNT 382 (554)
T ss_pred hcC--chH--HHHHHHHHH-HHH--HHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHH
Confidence 654 234 644455553 222 2222233336678899999999999999999999999964
No 46
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.80 E-value=1.4e-18 Score=187.44 Aligned_cols=281 Identities=15% Similarity=0.159 Sum_probs=194.2
Q ss_pred cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh
Q 036633 207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI 286 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~ 286 (550)
.++|.+..+..+...+... ......++++|++||||+.+|++++....+ ...+|+.+||+.+.+....
T Consensus 140 ~lig~s~~~~~~~~~i~~~---------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~---~~~~~i~~~c~~~~~~~~~ 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV---------APSEATVLIHGDSGTGKELVARAIHASSAR---SEKPLVTLNCAALNESLLE 207 (441)
T ss_pred ceEecCHHHHHHHHHHhhc---------cCCCCeEEEEecCCCCHHHHHHHHHHcCCC---CCCCeeeeeCCCCCHHHHH
Confidence 4788888888877776544 112267888999999999999999999887 7789999999998876666
Q ss_pred hhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-CCeEeecCCeEEEEeCCCC
Q 036633 287 KHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-GIAAFDLTNTLIIMTSDLK 354 (550)
Q Consensus 287 s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~g~~vd~~~~iiI~TsN~g 354 (550)
+.++| .++++ +....+++||||||+.+++.+|..|++++++| . +.. ++...--.++.+|+||+.+
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~--~-~~~~~~~~~~~~~~rii~~t~~~ 284 (441)
T PRK10365 208 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQER--E-VQRVGSNQTISVDVRLIAATHRD 284 (441)
T ss_pred HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccC--c-EEeCCCCceeeeceEEEEeCCCC
Confidence 77777 23222 23344689999999999999999999999999 5 332 2211112234588888876
Q ss_pred hHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHHH
Q 036633 355 DEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTSA 432 (550)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a 432 (550)
...... ...|+++|+.|+. .+.+. .|||.+ +|+..++..++.++..+.... ...+++++
T Consensus 285 ~~~~~~--------------~~~~~~~l~~~l~-~~~i~-~ppLreR~~Di~~l~~~~l~~~~~~~~~~---~~~~~~~a 345 (441)
T PRK10365 285 LAAEVN--------------AGRFRQDLYYRLN-VVAIE-VPSLRQRREDIPLLAGHFLQRFAERNRKA---VKGFTPQA 345 (441)
T ss_pred HHHHHH--------------cCCchHHHHHHhc-cceec-CCChhhcchhHHHHHHHHHHHHHHHhCCC---CCCcCHHH
Confidence 543322 4689999999994 45554 337765 799999999999877665333 34689999
Q ss_pred HHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCcccccccccCCCCH
Q 036633 433 LVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWWEESTEGLSL 512 (550)
Q Consensus 433 ~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~~~~~~~lsl 512 (550)
++.|..+.|| | |+|.|++++++ .+. .. .+.. |+... ++.......... .-......+..
T Consensus 346 ~~~L~~~~wp--g-N~reL~~~~~~-~~~--~~-----~~~~--i~~~~---l~~~~~~~~~~~-----~~~~~~~~l~~ 404 (441)
T PRK10365 346 MDLLIHYDWP--G-NIRELENAVER-AVV--LL-----TGEY--ISERE---LPLAIASTPIPL-----GQSQDIQPLVE 404 (441)
T ss_pred HHHHHhCCCC--C-HHHHHHHHHHH-HHH--hC-----CCCc--cchHh---CchhhcccccCc-----ccccchhhHHH
Confidence 9999999887 8 99999999997 211 11 1222 22221 111100000000 00000112333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633 513 EELKKYMDSLEALRNNVAIKLEEMMMRRAC 542 (550)
Q Consensus 513 ~eleq~~~ale~l~~nl~~~a~~l~~~~~~ 542 (550)
.|...+..+|++..+|....|+.|.+.+.+
T Consensus 405 ~e~~~i~~~l~~~~gn~~~aa~~Lgisr~t 434 (441)
T PRK10365 405 VEKEVILAALEKTGGNKTEAARQLGITRKT 434 (441)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhCCCHHH
Confidence 466678899999999999999999998754
No 47
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.80 E-value=9e-19 Score=192.28 Aligned_cols=197 Identities=21% Similarity=0.243 Sum_probs=141.7
Q ss_pred cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCC--C
Q 036633 207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGN--Y 280 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~--~ 280 (550)
.++||+++++.+..++... .|.+++|+||||||||++|+++++.+..+. ..+.+|+.+||+. +
T Consensus 66 ~iiGqs~~i~~l~~al~~~-----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~ 134 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP-----------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARF 134 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC-----------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccC
Confidence 5899999999887664322 456889999999999999999998653210 0246899999974 2
Q ss_pred CchhhhhhHHhH--------------------HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-----
Q 036633 281 TELESIKHFFDS--------------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR----- 335 (550)
Q Consensus 281 ~~~~~~s~liG~--------------------lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d----- 335 (550)
.+......++|. -.+.+.+..+++||||||+.+++.+|+.|+++++++.+. +..
T Consensus 135 ~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~-~~~~~~~~ 213 (531)
T TIGR02902 135 DERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVF-LDSAYYNS 213 (531)
T ss_pred CccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeee-eccccccc
Confidence 222222223331 112344556789999999999999999999999988322 210
Q ss_pred -------------C-CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHH
Q 036633 336 -------------G-IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDT 401 (550)
Q Consensus 336 -------------~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e 401 (550)
. |...|| .+|++|+... ..++|++.+|| ..|.|. ||+.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~d~---rlI~ATt~~p--------------------~~L~paLrsR~-~~I~f~---pL~~e 266 (531)
T TIGR02902 214 ENPNIPSHIHDIFQNGLPADF---RLIGATTRNP--------------------EEIPPALRSRC-VEIFFR---PLLDE 266 (531)
T ss_pred cCcccccchhhhcccCcccce---EEEEEecCCc--------------------ccCChHHhhhh-heeeCC---CCCHH
Confidence 0 222333 3555554432 35689999999 688999 99999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 402 TRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 402 ~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++..|++..+.+ .+ +.+++++++.|..+++ |+|.+.+.++.
T Consensus 267 ei~~Il~~~a~k-------~~---i~is~~al~~I~~y~~-----n~Rel~nll~~ 307 (531)
T TIGR02902 267 EIKEIAKNAAEK-------IG---INLEKHALELIVKYAS-----NGREAVNIVQL 307 (531)
T ss_pred HHHHHHHHHHHH-------cC---CCcCHHHHHHHHHhhh-----hHHHHHHHHHH
Confidence 999999987754 33 4789999999988765 77999999986
No 48
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=2.6e-18 Score=182.90 Aligned_cols=191 Identities=20% Similarity=0.271 Sum_probs=137.0
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------------
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------------ 266 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------ 266 (550)
-..|+||++++..+..++... + -|..+||+||+|||||++|+++|+.++...
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~---r-------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~ 86 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSG---K-------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITK 86 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHc
Confidence 356999999999988888865 1 236799999999999999999999997621
Q ss_pred CCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633 267 DNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTL 346 (550)
Q Consensus 267 ~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i 346 (550)
.....++.+|.+.-.....+..++..+...-....+.|++|||+|.++.+.++.||+.+++. . .+++
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP--p-----------~~vi 153 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP--P-----------AHIV 153 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC--C-----------CceE
Confidence 00112444443221111112222222111112245679999999999999999999999986 4 5677
Q ss_pred EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633 347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV 426 (550)
Q Consensus 347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l 426 (550)
||++||.. ..+.|.+++|| +++.|. +++.+++...+...+.. .|+
T Consensus 154 FILaTte~---------------------~kI~~TI~SRC-q~~~f~---~ls~~~i~~~L~~i~~~-------Egi--- 198 (484)
T PRK14956 154 FILATTEF---------------------HKIPETILSRC-QDFIFK---KVPLSVLQDYSEKLCKI-------ENV--- 198 (484)
T ss_pred EEeecCCh---------------------hhccHHHHhhh-heeeec---CCCHHHHHHHHHHHHHH-------cCC---
Confidence 88888752 35678899999 899999 99999998888776643 444
Q ss_pred cCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 427 CPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 427 ~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++++++..|+..+- | +.|..-+++++
T Consensus 199 ~~e~eAL~~Ia~~S~---G-d~RdAL~lLeq 225 (484)
T PRK14956 199 QYDQEGLFWIAKKGD---G-SVRDMLSFMEQ 225 (484)
T ss_pred CCCHHHHHHHHHHcC---C-hHHHHHHHHHH
Confidence 889999999998654 5 55766666664
No 49
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.79 E-value=1e-18 Score=187.56 Aligned_cols=263 Identities=18% Similarity=0.196 Sum_probs=196.2
Q ss_pred cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhh
Q 036633 209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKH 288 (550)
Q Consensus 209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~ 288 (550)
.|++..+......+.+. . ....++++.|.|||||-.+|++|++.... +.||+.+||..+.+.+..+.
T Consensus 316 ~~~d~s~a~l~rk~~rv---~------~~~~pvll~GEtGtGKe~laraiH~~s~~----~gpfvAvNCaAip~~liesE 382 (606)
T COG3284 316 PLLDPSRATLLRKAERV---A------ATDLPVLLQGETGTGKEVLARAIHQNSEA----AGPFVAVNCAAIPEALIESE 382 (606)
T ss_pred cccCHHHHHHHHHHHHH---h------hcCCCeEecCCcchhHHHHHHHHHhcccc----cCCeEEEEeccchHHhhhHH
Confidence 46677777766666655 1 11268999999999999999999998753 66999999999999999999
Q ss_pred HHh----HHHHHHHh--------CCCCeEEeccccccCHHHHHHHHHhhhhccccccccC---CeEeecCCeEEEEeCCC
Q 036633 289 FFD----SLAALVKK--------RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG---IAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 289 liG----~lt~al~~--------~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~---g~~vd~~~~iiI~TsN~ 353 (550)
||| .+|.+.++ .+++.+|||||+.++-+.|..||++|++| . ++-- ..+||++ ||.+|+.
T Consensus 383 LFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~--~-v~p~g~~~~~vdir---vi~ath~ 456 (606)
T COG3284 383 LFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEG--V-VTPLGGTRIKVDIR---VIAATHR 456 (606)
T ss_pred HhccCccccccchhccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhC--c-eeccCCcceeEEEE---EEeccCc
Confidence 999 67766554 34679999999999999999999999999 5 4432 4567877 9999999
Q ss_pred ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH-HHHHHHHHHHHHHHHHHhccCCCccccCCHHH
Q 036633 354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD-TTRLLLREWACEETKRRNNDSKAVIVCPSTSA 432 (550)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~-e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a 432 (550)
+...+.. ...|+.+|++|+ ..+++.+| ||.+ .|-...+.+.+.+ ..+. .+.+++++
T Consensus 457 dl~~lv~--------------~g~fredLyyrL-~~~~i~lP-~lr~R~d~~~~l~~~~~~------~~~~-~~~l~~~~ 513 (606)
T COG3284 457 DLAQLVE--------------QGRFREDLYYRL-NAFVITLP-PLRERSDRIPLLDRILKR------ENDW-RLQLDDDA 513 (606)
T ss_pred CHHHHHH--------------cCCchHHHHHHh-cCeeeccC-chhcccccHHHHHHHHHH------ccCC-CccCCHHH
Confidence 8877766 579999999999 56666633 7765 4444444444433 1234 67999999
Q ss_pred HHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCcccccccccCCCCH
Q 036633 433 LVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWWEESTEGLSL 512 (550)
Q Consensus 433 ~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~~~~~~~lsl 512 (550)
+..|..+.|| | |+|+|.++|+. ++ ++ .+++.+.+ .+++.... +.....+..
T Consensus 514 ~~~l~~~~WP--G-Nirel~~v~~~--~~--~l----~~~g~~~~-----~dlp~~l~-------------~~~~~~~~~ 564 (606)
T COG3284 514 LARLLAYRWP--G-NIRELDNVIER--LA--AL----SDGGRIRV-----SDLPPELL-------------EEQATPRED 564 (606)
T ss_pred HHHHHhCCCC--C-cHHHHHHHHHH--HH--Hc----CCCCeeEc-----ccCCHHHH-------------hhhcccccc
Confidence 9999998887 8 99999999996 11 11 13444433 23332221 001111444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633 513 EELKKYMDSLEALRNNVAIKLEEMMMRRAC 542 (550)
Q Consensus 513 ~eleq~~~ale~l~~nl~~~a~~l~~~~~~ 542 (550)
.+-..+..+++.-++|+...|+.|.+.+.+
T Consensus 565 ~~~~~l~~al~~~~~~is~aa~~lgi~R~T 594 (606)
T COG3284 565 IEKAALLAALQATNGNISEAARLLGISRST 594 (606)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHhCCCHHH
Confidence 577788899999999999999999988753
No 50
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.78 E-value=3.7e-18 Score=191.97 Aligned_cols=230 Identities=16% Similarity=0.193 Sum_probs=159.7
Q ss_pred CcccCcHHHHHH---HHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633 206 KRVFGQNDAIDV---IFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE 282 (550)
Q Consensus 206 ~~viGQ~~ai~~---i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~ 282 (550)
+.++||++.+.. +...+... +..+++|+||||||||++|+++|+.+.. +|+.+|++...-
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~-----------~~~slLL~GPpGtGKTTLA~aIA~~~~~------~f~~lna~~~~i 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD-----------RVGSLILYGPPGVGKTTLARIIANHTRA------HFSSLNAVLAGV 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC-----------CCceEEEECCCCCCHHHHHHHHHHHhcC------cceeehhhhhhh
Confidence 458899999853 33333322 3468999999999999999999998765 788888764211
Q ss_pred hhhhhhHHhHHHHHHHh-CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633 283 LESIKHFFDSLAALVKK-RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV 361 (550)
Q Consensus 283 ~~~~s~liG~lt~al~~-~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~ 361 (550)
..+...+......+.. ..+.+||||||+.++...|+.|++.+++| . .++|.+|+....
T Consensus 91 -~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g--~-------------IiLI~aTTenp~----- 149 (725)
T PRK13341 91 -KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENG--T-------------ITLIGATTENPY----- 149 (725)
T ss_pred -HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCc--e-------------EEEEEecCCChH-----
Confidence 1111222222222222 24569999999999999999999999988 5 224444432210
Q ss_pred hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc
Q 036633 362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA 441 (550)
Q Consensus 362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~ 441 (550)
..+.+.+++|+ .++.|. ||+.+++..++...+......+... .+.++++++++|+.++-
T Consensus 150 --------------~~l~~aL~SR~-~v~~l~---pLs~edi~~IL~~~l~~~~~~~g~~---~v~I~deaL~~La~~s~ 208 (725)
T PRK13341 150 --------------FEVNKALVSRS-RLFRLK---SLSDEDLHQLLKRALQDKERGYGDR---KVDLEPEAEKHLVDVAN 208 (725)
T ss_pred --------------hhhhhHhhccc-cceecC---CCCHHHHHHHHHHHHHHHHhhcCCc---ccCCCHHHHHHHHHhCC
Confidence 12467899998 689999 9999999999999998655544344 34899999999998652
Q ss_pred ccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCccccc
Q 036633 442 RKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWW 503 (550)
Q Consensus 442 ~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~ 503 (550)
| |+|.+.+.++. .+. .......+.+.++.+..+.......+.+|+.|+.||+.
T Consensus 209 ---G-D~R~lln~Le~-a~~----~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~ 261 (725)
T PRK13341 209 ---G-DARSLLNALEL-AVE----STPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDT 261 (725)
T ss_pred ---C-CHHHHHHHHHH-HHH----hcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHH
Confidence 7 88999999985 211 11111223455777777777777777899999988864
No 51
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.77 E-value=7.6e-18 Score=162.25 Aligned_cols=203 Identities=20% Similarity=0.235 Sum_probs=141.4
Q ss_pred hcCcccCcHHHHHHHHHHHhcchhhhcCCCCc-----CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633 204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSR-----RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG 278 (550)
Q Consensus 204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~-----~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s 278 (550)
--+.||||++|+.+. +.+... +.+| -.|.++||+||||||||.+|+++|..... ||+.++..
T Consensus 119 t~ddViGqEeAK~kc-rli~~y------LenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv------p~l~vkat 185 (368)
T COG1223 119 TLDDVIGQEEAKRKC-RLIMEY------LENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV------PLLLVKAT 185 (368)
T ss_pred cHhhhhchHHHHHHH-HHHHHH------hhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC------ceEEechH
Confidence 346799999999763 333222 1222 35689999999999999999999998766 99999966
Q ss_pred CCCchhh--hhhHHhHHHHHHHhCCCCeEEeccccccC------------HHHHHHHHHhhhhccccccccCCeEeecCC
Q 036633 279 NYTELES--IKHFFDSLAALVKKRPYSVVLFDKIEKAN------------SSILNLLLKILKTDFNRKATRGIAAFDLTN 344 (550)
Q Consensus 279 ~~~~~~~--~s~liG~lt~al~~~p~~VlllDEIeka~------------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~ 344 (550)
++...|- -++-|-.|.+..++..-||+||||+|... .++.|+||.-|| | +..+ ..
T Consensus 186 ~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD-g----i~en------eG 254 (368)
T COG1223 186 ELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD-G----IKEN------EG 254 (368)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc-C----cccC------Cc
Confidence 5533221 12222255555555445999999998654 357889998886 3 2222 23
Q ss_pred eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633 345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV 424 (550)
Q Consensus 345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~ 424 (550)
++.|++||.. ..++|++.||+.+-|.|. -.+.++...|++.++.. .-+
T Consensus 255 VvtIaaTN~p---------------------~~LD~aiRsRFEeEIEF~---LP~~eEr~~ile~y~k~-------~Pl- 302 (368)
T COG1223 255 VVTIAATNRP---------------------ELLDPAIRSRFEEEIEFK---LPNDEERLEILEYYAKK-------FPL- 302 (368)
T ss_pred eEEEeecCCh---------------------hhcCHHHHhhhhheeeee---CCChHHHHHHHHHHHHh-------CCC-
Confidence 5678888864 467899999999999999 77999999999988854 322
Q ss_pred cccCCHHHHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhh
Q 036633 425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKF 468 (550)
Q Consensus 425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~ 468 (550)
.+..+ .++++...- |.+||+++.-+-+..|-.+|..+.
T Consensus 303 pv~~~---~~~~~~~t~---g~SgRdikekvlK~aLh~Ai~ed~ 340 (368)
T COG1223 303 PVDAD---LRYLAAKTK---GMSGRDIKEKVLKTALHRAIAEDR 340 (368)
T ss_pred ccccC---HHHHHHHhC---CCCchhHHHHHHHHHHHHHHHhch
Confidence 33444 556665332 446698876665567777777654
No 52
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=164.30 Aligned_cols=227 Identities=18% Similarity=0.270 Sum_probs=164.4
Q ss_pred HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE
Q 036633 195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH 274 (550)
Q Consensus 195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~ 274 (550)
.++..|+..|...++||.-|++.|+.+++.. ... ..|.+|.++-|+|+|||||.++++.||+.++..| ..++++.
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~---~~n-~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G-l~S~~V~ 145 (344)
T KOG2170|consen 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSH---WAN-PNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG-LRSPFVH 145 (344)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHHHHHH---hcC-CCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcc-ccchhHH
Confidence 4578899999999999999999999999876 332 3478899999999999999999999999999854 2335544
Q ss_pred EecC--CCCchhhhhh----HHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633 275 FDMG--NYTELESIKH----FFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLII 348 (550)
Q Consensus 275 id~s--~~~~~~~~s~----liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI 348 (550)
.=.+ .|+.+..+.. |-.++.+.++.++.++++|||+||+||.+++.|-..+|-. . . ..-+||+++|+|
T Consensus 146 ~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyy--p-~---v~gv~frkaIFI 219 (344)
T KOG2170|consen 146 HFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYY--P-Q---VSGVDFRKAIFI 219 (344)
T ss_pred HhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccc--c-c---cccccccceEEE
Confidence 3222 2333333322 2225666677899999999999999999999999999843 2 2 234799999999
Q ss_pred EeCCCChHHHHHhhhhh---------h-HhhHHHHh-ccCCCh--------hh--hhhccceeEecCCCCCCHHHHHHHH
Q 036633 349 MTSDLKDEQVYEVMLTA---------T-YGRVNEVT-GSLFKP--------SL--LKLLDKLVVIDLAVPLLDTTRLLLR 407 (550)
Q Consensus 349 ~TsN~g~~~~~~~~~~~---------~-~~~~~~~l-~~~f~p--------~l--l~Rid~ii~f~~~~pL~~e~i~~I~ 407 (550)
+-||.|...|.+...+. . -......+ ...|++ .+ .++||.+|+|. ||++.++..++
T Consensus 220 fLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFL---PLek~hV~~C~ 296 (344)
T KOG2170|consen 220 FLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFL---PLEKRHVRSCI 296 (344)
T ss_pred EEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcC---cccHHHHHHHH
Confidence 99999999888765321 0 01111111 112221 12 27889999999 99999999999
Q ss_pred HHHHHHHHHHhccCCCccccCCHHHHHHHHhc-Cc-ccCC
Q 036633 408 EWACEETKRRNNDSKAVIVCPSTSALVHIASN-AA-RKYG 445 (550)
Q Consensus 408 ~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~-~~-~~~G 445 (550)
+-.+.+ +|. ..+.+.++-+++. .| |+.+
T Consensus 297 r~el~~-------rg~---~~d~~~~erva~~l~ffp~~~ 326 (344)
T KOG2170|consen 297 RAELRK-------RGL---APDQDFVERVANSLSFFPESS 326 (344)
T ss_pred HHHHHh-------ccc---ccchHHHHHHHHhhccccccc
Confidence 988854 544 7788888887763 33 5433
No 53
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=1.1e-17 Score=184.27 Aligned_cols=186 Identities=17% Similarity=0.204 Sum_probs=137.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-C-----------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-D----------------- 267 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~----------------- 267 (550)
+.||||+++++.+.+++... + -+..+||+||+|||||++|++||+.++... .
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g---R-------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G 85 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG---R-------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEG 85 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcC
Confidence 56899999999999888765 1 237889999999999999999999997521 0
Q ss_pred CCCceeEEecCCCCchhhhhhHHhHHHHHHH----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633 268 NDNHLIHFDMGNYTELESIKHFFDSLAALVK----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 268 ~~~~li~id~s~~~~~~~~s~liG~lt~al~----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
....++.+|-+.-.....+. .+.+.+. ...+.|+||||+|.++...+|.||+.||+. . .
T Consensus 86 ~h~DviEIDAas~rgVDdIR----eLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP--P-----------~ 148 (830)
T PRK07003 86 RFVDYVEMDAASNRGVDEMA----ALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP--P-----------P 148 (830)
T ss_pred CCceEEEecccccccHHHHH----HHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc--C-----------C
Confidence 01124444443211111122 2223222 245679999999999999999999999987 5 6
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA 423 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~ 423 (550)
+++||++||-. ..+.+.+++|| ..|.|. +++.+++...+...+.. .|+
T Consensus 149 ~v~FILaTtd~---------------------~KIp~TIrSRC-q~f~Fk---~Ls~eeIv~~L~~Il~~-------EgI 196 (830)
T PRK07003 149 HVKFILATTDP---------------------QKIPVTVLSRC-LQFNLK---QMPAGHIVSHLERILGE-------ERI 196 (830)
T ss_pred CeEEEEEECCh---------------------hhccchhhhhe-EEEecC---CcCHHHHHHHHHHHHHH-------cCC
Confidence 77889988853 35678899999 899999 99999999988887753 444
Q ss_pred ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++++++..|+..+- | +.|..-+++++
T Consensus 197 ---~id~eAL~lIA~~A~---G-smRdALsLLdQ 223 (830)
T PRK07003 197 ---AFEPQALRLLARAAQ---G-SMRDALSLTDQ 223 (830)
T ss_pred ---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 789999999998653 5 55766666554
No 54
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=2.2e-17 Score=180.22 Aligned_cols=189 Identities=20% Similarity=0.264 Sum_probs=138.3
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC------------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN------------------ 266 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------ 266 (550)
..|+||+++++.+.+++... +. ..+||+||+|||||++|+++|+.+....
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~ 83 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNE 83 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhc
Confidence 56999999999999998866 43 7899999999999999999999987511
Q ss_pred CCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633 267 DNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTL 346 (550)
Q Consensus 267 ~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i 346 (550)
...-.++.+|.+.......+..++..+.-.-...++.|++|||+|.+++..++.|++.+++. . .++.
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP--P-----------~~v~ 150 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP--P-----------EHVK 150 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC--C-----------CCcE
Confidence 01113555665433222223233322111112245679999999999999999999999986 4 4566
Q ss_pred EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633 347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV 426 (550)
Q Consensus 347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l 426 (550)
||++||-. ..+.+.+++|| .++.|. +++.+++...+...+.+ .|+
T Consensus 151 FILaTtd~---------------------~kIp~TIlSRC-q~feFk---pLs~eEI~k~L~~Il~k-------EgI--- 195 (702)
T PRK14960 151 FLFATTDP---------------------QKLPITVISRC-LQFTLR---PLAVDEITKHLGAILEK-------EQI--- 195 (702)
T ss_pred EEEEECCh---------------------HhhhHHHHHhh-heeecc---CCCHHHHHHHHHHHHHH-------cCC---
Confidence 78877642 23456789999 899999 99999999988888754 455
Q ss_pred cCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 427 CPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 427 ~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++++++..|+..+- | +.|.+-+.+++
T Consensus 196 ~id~eAL~~IA~~S~---G-dLRdALnLLDQ 222 (702)
T PRK14960 196 AADQDAIWQIAESAQ---G-SLRDALSLTDQ 222 (702)
T ss_pred CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 889999999998653 5 56777666654
No 55
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=1.6e-17 Score=180.92 Aligned_cols=185 Identities=16% Similarity=0.206 Sum_probs=136.3
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------ 267 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------ 267 (550)
+.||||+++++.+.+++... + -|..+||+||+|||||++|+.||+.++..+.
T Consensus 16 ddVIGQe~vv~~L~~al~~g---R-------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~ 85 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ---R-------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACT 85 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC---C-------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHH
Confidence 56999999999999999876 2 2378899999999999999999999976210
Q ss_pred -----CCCceeEEecCCCCchhhhhhHHhHHHHHHH----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCe
Q 036633 268 -----NDNHLIHFDMGNYTELESIKHFFDSLAALVK----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIA 338 (550)
Q Consensus 268 -----~~~~li~id~s~~~~~~~~s~liG~lt~al~----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~ 338 (550)
....++.+|.+.-.....+. .+.+.+. ...+.|++|||+|.++...+|.||+.||+. .
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIR----eLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP--P------- 152 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMA----QLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP--P------- 152 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHH----HHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC--C-------
Confidence 00134444443211111222 2233333 234679999999999999999999999987 4
Q ss_pred EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 036633 339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRN 418 (550)
Q Consensus 339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l 418 (550)
.+++||++||.. ..+.+.++||| ..+.|. +++.+++...+...+..
T Consensus 153 ----~~v~FILaTtep---------------------~kLlpTIrSRC-q~f~f~---~ls~eei~~~L~~Il~~----- 198 (700)
T PRK12323 153 ----EHVKFILATTDP---------------------QKIPVTVLSRC-LQFNLK---QMPPGHIVSHLDAILGE----- 198 (700)
T ss_pred ----CCceEEEEeCCh---------------------HhhhhHHHHHH-HhcccC---CCChHHHHHHHHHHHHH-----
Confidence 567788888753 35668899999 899999 99999999888877743
Q ss_pred ccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633 419 NDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMD 456 (550)
Q Consensus 419 ~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~ 456 (550)
.|+ .+++++++.|+..+- | +.|...++++
T Consensus 199 --Egi---~~d~eAL~~IA~~A~---G-s~RdALsLLd 227 (700)
T PRK12323 199 --EGI---AHEVNALRLLAQAAQ---G-SMRDALSLTD 227 (700)
T ss_pred --cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHH
Confidence 444 789999999987643 5 5576655554
No 56
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.7e-18 Score=168.45 Aligned_cols=247 Identities=16% Similarity=0.176 Sum_probs=174.1
Q ss_pred HHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCC----CcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE
Q 036633 199 RVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS----SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH 274 (550)
Q Consensus 199 ~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~----~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~ 274 (550)
.+-+.|++.||||++|++.|+-+++..- -|..+. +.--|.++|+.||||||||++|+.||+.... ||+.
T Consensus 8 eIV~eLd~yIIGQ~~AKkaVAIALRNR~-RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~a------PFiK 80 (444)
T COG1220 8 EIVSELDRYIIGQDEAKKAVAIALRNRW-RRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGA------PFIK 80 (444)
T ss_pred HHHHHHHhHhcCcHHHHHHHHHHHHHHH-HHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCC------CeEE
Confidence 4566788999999999999999996530 022222 2235689999999999999999999999877 9999
Q ss_pred EecCCCCchhhhhhHHh---------------------------------------------------------------
Q 036633 275 FDMGNYTELESIKHFFD--------------------------------------------------------------- 291 (550)
Q Consensus 275 id~s~~~~~~~~s~liG--------------------------------------------------------------- 291 (550)
+..+-|++..++.+-+-
T Consensus 81 VEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~r 160 (444)
T COG1220 81 VEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFR 160 (444)
T ss_pred EEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHH
Confidence 99888887655322111
Q ss_pred ------------------------------------------------------------------------------HH
Q 036633 292 ------------------------------------------------------------------------------SL 293 (550)
Q Consensus 292 ------------------------------------------------------------------------------~l 293 (550)
.+
T Consensus 161 kkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i 240 (444)
T COG1220 161 KKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEI 240 (444)
T ss_pred HHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHH
Confidence 00
Q ss_pred -HHHHHh-CCCCeEEeccccccC------------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633 294 -AALVKK-RPYSVVLFDKIEKAN------------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY 359 (550)
Q Consensus 294 -t~al~~-~p~~VlllDEIeka~------------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~ 359 (550)
.+++.. -..++||+|||||.. ..||.-||.+++.. . +.--=-.|...+.+||++.-+.....
T Consensus 241 ~~eAi~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGs--t-V~TKyG~VkTdHILFIasGAFh~sKP- 316 (444)
T COG1220 241 KQEAIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGS--T-VSTKYGPVKTDHILFIASGAFHVAKP- 316 (444)
T ss_pred HHHHHHHHHhcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCc--e-eeccccccccceEEEEecCceecCCh-
Confidence 111111 123799999999852 25899999999765 3 32221245667777887543321111
Q ss_pred HhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHH----HHHHHHHHhccCCCccccCCHHHHHH
Q 036633 360 EVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW----ACEETKRRNNDSKAVIVCPSTSALVH 435 (550)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~----~l~~~~~~l~~~~~~~l~~~~~a~~~ 435 (550)
+-+-|+|-+|++--|.+. +|+.+|+..|+.. .+.++..-++..|+ .+.|++++++.
T Consensus 317 ----------------SDLiPELQGRfPIRVEL~---~Lt~~Df~rILtep~~sLikQY~aLlkTE~v-~l~FtddaI~~ 376 (444)
T COG1220 317 ----------------SDLIPELQGRFPIRVELD---ALTKEDFERILTEPKASLIKQYKALLKTEGV-ELEFTDDAIKR 376 (444)
T ss_pred ----------------hhcChhhcCCCceEEEcc---cCCHHHHHHHHcCcchHHHHHHHHHHhhcCe-eEEecHHHHHH
Confidence 235689999999999999 9999999999854 34445555566899 99999999999
Q ss_pred HHhcCc------ccCCCcccHHHHHHcchhhHHHHHhhhhcCCCcccccc
Q 036633 436 IASNAA------RKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSK 479 (550)
Q Consensus 436 L~~~~~------~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~ 479 (550)
|++.+| .+.|| |-|..++++ .|.+.-+...-.++..+.|+.
T Consensus 377 iAeiA~~vN~~~ENIGA--RRLhTvlEr-lLediSFeA~d~~g~~v~Id~ 423 (444)
T COG1220 377 IAEIAYQVNEKTENIGA--RRLHTVLER-LLEDISFEAPDMSGQKVTIDA 423 (444)
T ss_pred HHHHHHHhcccccchhH--HHHHHHHHH-HHHHhCccCCcCCCCeEEEcH
Confidence 998766 45899 999999996 666555554444455554443
No 57
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.75 E-value=2.3e-17 Score=176.63 Aligned_cols=219 Identities=17% Similarity=0.189 Sum_probs=152.9
Q ss_pred CcccCcHHHHHH---HHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633 206 KRVFGQNDAIDV---IFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE 282 (550)
Q Consensus 206 ~~viGQ~~ai~~---i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~ 282 (550)
+.++||++++.. +...+... ++.+++|+||||||||++|+++|+.+.. +|+.++++...
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~-----------~~~~ilL~GppGtGKTtLA~~ia~~~~~------~~~~l~a~~~~- 73 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG-----------RLSSMILWGPPGTGKTTLARIIAGATDA------PFEALSAVTSG- 73 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC-----------CCceEEEECCCCCCHHHHHHHHHHHhCC------CEEEEeccccc-
Confidence 469999999866 66666543 4468999999999999999999998866 89999876542
Q ss_pred hhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633 283 LESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM 362 (550)
Q Consensus 283 ~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~ 362 (550)
...+..++..+........+.|||||||+.+++..++.|+..+++| . .++|.+|+...
T Consensus 74 ~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~--~-------------iilI~att~n~------- 131 (413)
T PRK13342 74 VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDG--T-------------ITLIGATTENP------- 131 (413)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcC--c-------------EEEEEeCCCCh-------
Confidence 1122222222222122235579999999999999999999999988 4 22454443211
Q ss_pred hhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcc
Q 036633 363 LTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAAR 442 (550)
Q Consensus 363 ~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~ 442 (550)
...+.+.+++|| .++.|. |++.+++..++...+.... .++ +.++++++++|+..+-
T Consensus 132 ------------~~~l~~aL~SR~-~~~~~~---~ls~e~i~~lL~~~l~~~~-----~~~--i~i~~~al~~l~~~s~- 187 (413)
T PRK13342 132 ------------SFEVNPALLSRA-QVFELK---PLSEEDIEQLLKRALEDKE-----RGL--VELDDEALDALARLAN- 187 (413)
T ss_pred ------------hhhccHHHhccc-eeeEeC---CCCHHHHHHHHHHHHHHhh-----cCC--CCCCHHHHHHHHHhCC-
Confidence 124578899999 899999 9999999999998875531 121 3789999999998652
Q ss_pred cCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCccccc
Q 036633 443 KYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWW 503 (550)
Q Consensus 443 ~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~ 503 (550)
| |.|.+.+.++. . +.. ++ .|+.+............+++.++.+|+.
T Consensus 188 --G-d~R~aln~Le~-~-~~~--------~~--~It~~~v~~~~~~~~~~~d~~~~~~~~~ 233 (413)
T PRK13342 188 --G-DARRALNLLEL-A-ALG--------VD--SITLELLEEALQKRAARYDKDGDEHYDL 233 (413)
T ss_pred --C-CHHHHHHHHHH-H-HHc--------cC--CCCHHHHHHHHhhhhhccCCCccHHHHH
Confidence 6 77888888875 1 111 11 2455555665555556677776666654
No 58
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=3.8e-17 Score=183.20 Aligned_cols=185 Identities=20% Similarity=0.240 Sum_probs=132.9
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCC---------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DND--------------- 269 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~--------------- 269 (550)
..||||++++..+.+++... + -|..+||+||+|||||++|+++|+.+++.. ...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~---r-------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g 85 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ---R-------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQG 85 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC---C-------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcC
Confidence 56999999999998888765 1 236779999999999999999999998621 000
Q ss_pred --CceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633 270 --NHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 270 --~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
..++.+|.+.......+. .+.+.+.. .++.|++|||+++++++.++.||+.||+. . .
T Consensus 86 ~~~DviEidAas~~kVDdIR----eLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP--P-----------~ 148 (944)
T PRK14949 86 RFVDLIEVDAASRTKVDDTR----ELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP--P-----------E 148 (944)
T ss_pred CCceEEEeccccccCHHHHH----HHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc--C-----------C
Confidence 011223322111111122 33333332 45679999999999999999999999986 4 4
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA 423 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~ 423 (550)
+++||++||-. ..+.+.+++|| .++.|. ||+.+++...+...+.. .++
T Consensus 149 ~vrFILaTTe~---------------------~kLl~TIlSRC-q~f~fk---pLs~eEI~~~L~~il~~-------EgI 196 (944)
T PRK14949 149 HVKFLLATTDP---------------------QKLPVTVLSRC-LQFNLK---SLTQDEIGTQLNHILTQ-------EQL 196 (944)
T ss_pred CeEEEEECCCc---------------------hhchHHHHHhh-eEEeCC---CCCHHHHHHHHHHHHHH-------cCC
Confidence 56677776642 34667899999 899999 99999999888877754 344
Q ss_pred ccccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633 424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMD 456 (550)
Q Consensus 424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~ 456 (550)
.+++++++.|+..+- | +.|..-++++
T Consensus 197 ---~~edeAL~lIA~~S~---G-d~R~ALnLLd 222 (944)
T PRK14949 197 ---PFEAEALTLLAKAAN---G-SMRDALSLTD 222 (944)
T ss_pred ---CCCHHHHHHHHHHcC---C-CHHHHHHHHH
Confidence 789999999998643 5 5576666655
No 59
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2.6e-17 Score=179.37 Aligned_cols=186 Identities=20% Similarity=0.229 Sum_probs=137.3
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-C-----------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-D----------------- 267 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~----------------- 267 (550)
+.||||+++++.+.+++... + -|..+||+||+|||||++|+++|+.++..+ .
T Consensus 16 ~divGq~~v~~~L~~~~~~~---~-------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g 85 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ---Y-------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEG 85 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC---C-------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcC
Confidence 56999999999999999865 1 337899999999999999999999997621 0
Q ss_pred CCCceeEEecCCCCchhhhhhHHhHHHHHHH----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633 268 NDNHLIHFDMGNYTELESIKHFFDSLAALVK----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 268 ~~~~li~id~s~~~~~~~~s~liG~lt~al~----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
....++.+|.+.......+. .+.+.+. ..+|.|++|||+|.++++.++.||+.|++. . .
T Consensus 86 ~~~d~~eidaas~~~v~~iR----~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep--p-----------~ 148 (509)
T PRK14958 86 RFPDLFEVDAASRTKVEDTR----ELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP--P-----------S 148 (509)
T ss_pred CCceEEEEcccccCCHHHHH----HHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc--C-----------C
Confidence 11125556544322222222 2233333 245679999999999999999999999987 5 5
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA 423 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~ 423 (550)
+++||++|+-. ....+.+++|| .++.|. +++.+++...+...+.+ .|+
T Consensus 149 ~~~fIlattd~---------------------~kl~~tI~SRc-~~~~f~---~l~~~~i~~~l~~il~~-------egi 196 (509)
T PRK14958 149 HVKFILATTDH---------------------HKLPVTVLSRC-LQFHLA---QLPPLQIAAHCQHLLKE-------ENV 196 (509)
T ss_pred CeEEEEEECCh---------------------HhchHHHHHHh-hhhhcC---CCCHHHHHHHHHHHHHH-------cCC
Confidence 67788877532 23456699999 899999 99999999888877754 455
Q ss_pred ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+++++++.|+..+- | +.|.+-+.+++
T Consensus 197 ---~~~~~al~~ia~~s~---G-slR~al~lLdq 223 (509)
T PRK14958 197 ---EFENAALDLLARAAN---G-SVRDALSLLDQ 223 (509)
T ss_pred ---CCCHHHHHHHHHHcC---C-cHHHHHHHHHH
Confidence 789999999998643 5 55777777764
No 60
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.74 E-value=4.1e-17 Score=161.05 Aligned_cols=176 Identities=19% Similarity=0.236 Sum_probs=131.3
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++||++++..+.+++.+. -..++||+||||||||+.|+++|+.+|+.......+...|.|......-
T Consensus 36 de~~gQe~vV~~L~~a~~~~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisv 104 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISV 104 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccc
Confidence 56899999999999999864 1259999999999999999999999998211122233345554433221
Q ss_pred hhhHHh---HHHHHHH------hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChH
Q 036633 286 IKHFFD---SLAALVK------KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDE 356 (550)
Q Consensus 286 ~s~liG---~lt~al~------~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~ 356 (550)
+..-+. .++.... ..|+.|++|||.|-+..+.|+.|.+++|+- . ++++||+-||.-
T Consensus 105 vr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~--s-----------~~trFiLIcnyl-- 169 (346)
T KOG0989|consen 105 VREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF--S-----------RTTRFILICNYL-- 169 (346)
T ss_pred hhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc--c-----------cceEEEEEcCCh--
Confidence 111010 2222221 145689999999999999999999999986 4 678899999974
Q ss_pred HHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHH
Q 036633 357 QVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI 436 (550)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L 436 (550)
..+.+.+.+|| .-+.|. +|..+++...++....+ .|+ .+++++++.|
T Consensus 170 -------------------srii~pi~SRC-~KfrFk---~L~d~~iv~rL~~Ia~~-------E~v---~~d~~al~~I 216 (346)
T KOG0989|consen 170 -------------------SRIIRPLVSRC-QKFRFK---KLKDEDIVDRLEKIASK-------EGV---DIDDDALKLI 216 (346)
T ss_pred -------------------hhCChHHHhhH-HHhcCC---CcchHHHHHHHHHHHHH-------hCC---CCCHHHHHHH
Confidence 35566799999 799999 99999998887776643 555 8999999999
Q ss_pred HhcC
Q 036633 437 ASNA 440 (550)
Q Consensus 437 ~~~~ 440 (550)
++.+
T Consensus 217 ~~~S 220 (346)
T KOG0989|consen 217 AKIS 220 (346)
T ss_pred HHHc
Confidence 9864
No 61
>PLN03025 replication factor C subunit; Provisional
Probab=99.74 E-value=4.7e-17 Score=168.42 Aligned_cols=187 Identities=16% Similarity=0.181 Sum_probs=132.8
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++||++++..+...+... +..+++|+||||||||++|+++|+.+++.+ ....++.+|.++......
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~-----------~~~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd~~~~~~ 80 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG-----------NMPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASDDRGIDV 80 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----------CCceEEEECCCCCCHHHHHHHHHHHHhccc-CccceeeecccccccHHH
Confidence 45789999998877665533 224799999999999999999999997621 123466677665433222
Q ss_pred hhhHHhHHHHHH---HhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633 286 IKHFFDSLAALV---KKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM 362 (550)
Q Consensus 286 ~s~liG~lt~al---~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~ 362 (550)
+...+..+.... ...++.||+|||+|.++++.|+.|++.++.. . .++.||+++|..
T Consensus 81 vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~--~-----------~~t~~il~~n~~-------- 139 (319)
T PLN03025 81 VRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY--S-----------NTTRFALACNTS-------- 139 (319)
T ss_pred HHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc--c-----------CCceEEEEeCCc--------
Confidence 222222221110 0123579999999999999999999999864 3 345688888853
Q ss_pred hhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcc
Q 036633 363 LTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAAR 442 (550)
Q Consensus 363 ~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~ 442 (550)
..+.|++.+|| .++.|. |++.+++...+...+.+ .|+ .++++++++|+..+-
T Consensus 140 -------------~~i~~~L~SRc-~~i~f~---~l~~~~l~~~L~~i~~~-------egi---~i~~~~l~~i~~~~~- 191 (319)
T PLN03025 140 -------------SKIIEPIQSRC-AIVRFS---RLSDQEILGRLMKVVEA-------EKV---PYVPEGLEAIIFTAD- 191 (319)
T ss_pred -------------cccchhHHHhh-hcccCC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHcC-
Confidence 34567899999 799999 99999998888776643 555 789999999998542
Q ss_pred cCCCcccHHHHHHc
Q 036633 443 KYGQNGEGLKRWMD 456 (550)
Q Consensus 443 ~~GaN~R~L~~~i~ 456 (550)
| +.|.+-+.++
T Consensus 192 --g-DlR~aln~Lq 202 (319)
T PLN03025 192 --G-DMRQALNNLQ 202 (319)
T ss_pred --C-CHHHHHHHHH
Confidence 4 4465555554
No 62
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=8e-17 Score=178.06 Aligned_cols=190 Identities=19% Similarity=0.209 Sum_probs=136.0
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CC---------------
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DN--------------- 268 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~--------------- 268 (550)
-..||||++++..+.+++... + -|..+||+||+|||||++|+++|+.++... ..
T Consensus 15 f~divGQe~vv~~L~~~l~~~---r-------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLG---R-------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQ 84 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHc
Confidence 357999999999999888865 1 236789999999999999999999997621 00
Q ss_pred --CCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633 269 --DNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTL 346 (550)
Q Consensus 269 --~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i 346 (550)
...++.+|.+.......+..++..+...-...++.|++|||+|+++...+|.||+.||+. . .+++
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP--p-----------~~v~ 151 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP--P-----------EHVK 151 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC--C-----------CCeE
Confidence 112344444322211222222222211112345679999999999999999999999986 4 5666
Q ss_pred EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633 347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV 426 (550)
Q Consensus 347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l 426 (550)
||++|+-. ..+.+.+++|| ..+.|. +++.+++...+...+.. .|+
T Consensus 152 FIL~Tt~~---------------------~kLl~TI~SRC-~~~~f~---~Ls~~ei~~~L~~il~~-------e~i--- 196 (647)
T PRK07994 152 FLLATTDP---------------------QKLPVTILSRC-LQFHLK---ALDVEQIRQQLEHILQA-------EQI--- 196 (647)
T ss_pred EEEecCCc---------------------cccchHHHhhh-eEeeCC---CCCHHHHHHHHHHHHHH-------cCC---
Confidence 78877643 35667799999 899999 99999999888887743 344
Q ss_pred cCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633 427 CPSTSALVHIASNAARKYGQNGEGLKRWMD 456 (550)
Q Consensus 427 ~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~ 456 (550)
.++++++..|+..+. | +.|..-++++
T Consensus 197 ~~e~~aL~~Ia~~s~---G-s~R~Al~lld 222 (647)
T PRK07994 197 PFEPRALQLLARAAD---G-SMRDALSLTD 222 (647)
T ss_pred CCCHHHHHHHHHHcC---C-CHHHHHHHHH
Confidence 789999999998653 5 5576655554
No 63
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=8.8e-17 Score=175.24 Aligned_cols=190 Identities=21% Similarity=0.238 Sum_probs=134.7
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-C-----------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-D----------------- 267 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~----------------- 267 (550)
..|+||++++..+..++... + -|..+||+||+|||||++|+.+|+.++... .
T Consensus 16 ~diiGq~~~v~~L~~~i~~~---r-------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~ 85 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ---K-------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN 85 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC
Confidence 56899999999999888765 1 236799999999999999999999987511 0
Q ss_pred CCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633 268 NDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLI 347 (550)
Q Consensus 268 ~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii 347 (550)
....++.+|.+.......+..++..+...-...++.|++|||+|+++.+.++.||+.|++. . .+++|
T Consensus 86 ~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep--p-----------~~v~f 152 (546)
T PRK14957 86 SFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP--P-----------EYVKF 152 (546)
T ss_pred CCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC--C-----------CCceE
Confidence 1123444544322211122222222211112235679999999999999999999999987 4 45667
Q ss_pred EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 036633 348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVC 427 (550)
Q Consensus 348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~ 427 (550)
|++|+-. ....+.+++|| .++.|. +++.+++...+...+.+ .|+ .
T Consensus 153 IL~Ttd~---------------------~kil~tI~SRc-~~~~f~---~Ls~~eI~~~L~~il~~-------egi---~ 197 (546)
T PRK14957 153 ILATTDY---------------------HKIPVTILSRC-IQLHLK---HISQADIKDQLKIILAK-------ENI---N 197 (546)
T ss_pred EEEECCh---------------------hhhhhhHHHhe-eeEEeC---CCCHHHHHHHHHHHHHH-------cCC---C
Confidence 7666431 23445699999 899999 99999999888877754 455 7
Q ss_pred CCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 428 PSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 428 ~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++++++++|+..+- | +.|.+-+.+++
T Consensus 198 ~e~~Al~~Ia~~s~---G-dlR~alnlLek 223 (546)
T PRK14957 198 SDEQSLEYIAYHAK---G-SLRDALSLLDQ 223 (546)
T ss_pred CCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 89999999998653 5 56877777664
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=7.2e-17 Score=174.17 Aligned_cols=187 Identities=21% Similarity=0.319 Sum_probs=133.5
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------------
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------------ 266 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------ 266 (550)
-+.|+||++++..+..++... + -|.++||+||||||||++|+++|+.++...
T Consensus 13 ~~divGq~~i~~~L~~~i~~~---~-------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKN---S-------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 356999999998888877755 1 236799999999999999999999987511
Q ss_pred CCCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 267 DNDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 267 ~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
.....++.+|.+.......+. .+.+.++.. .+.||++||++.++.+.++.|+..+++. .
T Consensus 83 g~~~dv~el~aa~~~gid~iR----~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p--~----------- 145 (472)
T PRK14962 83 GTFMDVIELDAASNRGIDEIR----KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP--P----------- 145 (472)
T ss_pred CCCCccEEEeCcccCCHHHHH----HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC--C-----------
Confidence 011135556554322111111 233333333 3569999999999999999999999985 3
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK 422 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~ 422 (550)
.++++|++||.. ..+.+.+.+|+ .++.|. |++.+++..++...+.. .|
T Consensus 146 ~~vv~Ilattn~---------------------~kl~~~L~SR~-~vv~f~---~l~~~el~~~L~~i~~~-------eg 193 (472)
T PRK14962 146 SHVVFVLATTNL---------------------EKVPPTIISRC-QVIEFR---NISDELIIKRLQEVAEA-------EG 193 (472)
T ss_pred CcEEEEEEeCCh---------------------HhhhHHHhcCc-EEEEEC---CccHHHHHHHHHHHHHH-------cC
Confidence 346677666521 24567899999 799999 99999998888877643 45
Q ss_pred CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ .++++++++|+..+. | +.|.+-+.++.
T Consensus 194 i---~i~~eal~~Ia~~s~---G-dlR~aln~Le~ 221 (472)
T PRK14962 194 I---EIDREALSFIAKRAS---G-GLRDALTMLEQ 221 (472)
T ss_pred C---CCCHHHHHHHHHHhC---C-CHHHHHHHHHH
Confidence 4 789999999998543 4 45766666653
No 65
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.3e-16 Score=175.51 Aligned_cols=190 Identities=17% Similarity=0.240 Sum_probs=137.4
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-------------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------------- 266 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------- 266 (550)
+.|+||+++++.+.+++... + -|..+||+||+|||||++|+++|+.++...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~---r-------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG---R-------INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPN 82 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcc
Confidence 56899999999999998865 1 236789999999999999999999998411
Q ss_pred -CCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633 267 -DNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNT 345 (550)
Q Consensus 267 -~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ 345 (550)
.....++.+|.+.......+..++..+...-...++.|++|||+|.++.+.++.||+.|++- . .++
T Consensus 83 ~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp--p-----------~~~ 149 (584)
T PRK14952 83 GPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP--P-----------EHL 149 (584)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC--C-----------CCe
Confidence 01223555555432222222222221111112245679999999999999999999999986 4 567
Q ss_pred EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633 346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI 425 (550)
Q Consensus 346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~ 425 (550)
+||++|+-. ..+.+.+.+|+ .++.|. +++.+++...+...+.. .|+
T Consensus 150 ~fIL~tte~---------------------~kll~TI~SRc-~~~~F~---~l~~~~i~~~L~~i~~~-------egi-- 195 (584)
T PRK14952 150 IFIFATTEP---------------------EKVLPTIRSRT-HHYPFR---LLPPRTMRALIARICEQ-------EGV-- 195 (584)
T ss_pred EEEEEeCCh---------------------HhhHHHHHHhc-eEEEee---CCCHHHHHHHHHHHHHH-------cCC--
Confidence 788877542 24557799999 899999 99999998888777743 455
Q ss_pred ccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 426 VCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 426 l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++++++.+|+..+. | +.|..-+.+++
T Consensus 196 -~i~~~al~~Ia~~s~---G-dlR~aln~Ldq 222 (584)
T PRK14952 196 -VVDDAVYPLVIRAGG---G-SPRDTLSVLDQ 222 (584)
T ss_pred -CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 789999999988543 5 55777676664
No 66
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.1e-16 Score=172.16 Aligned_cols=186 Identities=19% Similarity=0.223 Sum_probs=139.8
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------------C
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------------D 267 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------~ 267 (550)
+.+|||+++++.+.+++... + -|.++||+||+|||||++|+++|+.+.... .
T Consensus 13 ~dliGQe~vv~~L~~a~~~~---r-------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~ 82 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN---K-------IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNS 82 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC---C-------CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhcc
Confidence 56899999999988888765 1 237999999999999999999999875310 1
Q ss_pred CCCceeEEecCCCCchhhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633 268 NDNHLIHFDMGNYTELESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 268 ~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
....++.+|.+.......+. .+.+.+...| +.|++|||++.++.+.++.|++.|++. . .
T Consensus 83 ~~~Dv~eidaas~~~vddIR----~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP--p-----------~ 145 (491)
T PRK14964 83 NHPDVIEIDAASNTSVDDIK----VILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP--A-----------P 145 (491)
T ss_pred CCCCEEEEecccCCCHHHHH----HHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC--C-----------C
Confidence 23355667765433322332 2334444333 569999999999999999999999987 5 5
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA 423 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~ 423 (550)
+++||++|+-. ..+.+.+.+|| ..+.|. +++.+++...+...+.+ .|+
T Consensus 146 ~v~fIlatte~---------------------~Kl~~tI~SRc-~~~~f~---~l~~~el~~~L~~ia~~-------Egi 193 (491)
T PRK14964 146 HVKFILATTEV---------------------KKIPVTIISRC-QRFDLQ---KIPTDKLVEHLVDIAKK-------ENI 193 (491)
T ss_pred CeEEEEEeCCh---------------------HHHHHHHHHhh-eeeecc---cccHHHHHHHHHHHHHH-------cCC
Confidence 57788877532 24567799999 899999 99999999888877753 455
Q ss_pred ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+++++++.|+..+- | +.|.+.+.+++
T Consensus 194 ---~i~~eAL~lIa~~s~---G-slR~alslLdq 220 (491)
T PRK14964 194 ---EHDEESLKLIAENSS---G-SMRNALFLLEQ 220 (491)
T ss_pred ---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 889999999998653 5 66877777765
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.5e-16 Score=167.42 Aligned_cols=187 Identities=18% Similarity=0.235 Sum_probs=133.4
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCC--------------
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DND-------------- 269 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~-------------- 269 (550)
-+.|+||+++++.+.+++... + -|..++|+||+|||||++|+++|+.++... ...
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~---~-------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~ 84 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLG---R-------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEK 84 (363)
T ss_pred hhhccChHHHHHHHHHHHHcC---C-------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 357999999999998888765 1 236789999999999999999999997410 011
Q ss_pred ---CceeEEecCCCCchhhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 270 ---NHLIHFDMGNYTELESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 270 ---~~li~id~s~~~~~~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
-.++.+|.+... .+.. +-.+.+.+...| +.|++|||+++++...++.||+.+++. .
T Consensus 85 ~~~~d~~~~~~~~~~---~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~--~----------- 147 (363)
T PRK14961 85 GLCLDLIEIDAASRT---KVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP--P----------- 147 (363)
T ss_pred CCCCceEEecccccC---CHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC--C-----------
Confidence 123333332211 1111 113334444333 469999999999999999999999986 4
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK 422 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~ 422 (550)
.++.||++|+-. ..+.+.+.+|+ ..+.|. |++.+++..++...+.. .|
T Consensus 148 ~~~~fIl~t~~~---------------------~~l~~tI~SRc-~~~~~~---~l~~~el~~~L~~~~~~-------~g 195 (363)
T PRK14961 148 QHIKFILATTDV---------------------EKIPKTILSRC-LQFKLK---IISEEKIFNFLKYILIK-------ES 195 (363)
T ss_pred CCeEEEEEcCCh---------------------HhhhHHHHhhc-eEEeCC---CCCHHHHHHHHHHHHHH-------cC
Confidence 456677776532 23567799999 899999 99999999888877744 44
Q ss_pred CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ .++++++++|+..+- | +.|.+-+.+++
T Consensus 196 ~---~i~~~al~~ia~~s~---G-~~R~al~~l~~ 223 (363)
T PRK14961 196 I---DTDEYALKLIAYHAH---G-SMRDALNLLEH 223 (363)
T ss_pred C---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 4 789999999998643 5 56776666654
No 68
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.5e-16 Score=160.12 Aligned_cols=189 Identities=21% Similarity=0.314 Sum_probs=138.2
Q ss_pred CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
..|=|-++-++.|.+++...+- ...|+.. |.-+|||||||||||.|||++|..... .|+++..|++
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~P---PKGVLLYGPPGTGKTLLAkAVA~~T~A------tFIrvvgSEl 221 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDP---PKGVLLYGPPGTGKTLLAKAVANQTDA------TFIRVVGSEL 221 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCC---CCceEeeCCCCCcHHHHHHHHHhccCc------eEEEeccHHH
Confidence 4577889999999999876621 1344422 268999999999999999999998666 9999999887
Q ss_pred CchhhhhhHHh-------HHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhh--ccccccccCCeEe
Q 036633 281 TELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKT--DFNRKATRGIAAF 340 (550)
Q Consensus 281 ~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~--g~~~~l~d~g~~v 340 (550)
+.+++| .+-+..+.+.-||||+||||.. +.+||..++++|.. | . ..
T Consensus 222 -----VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG--F--D~----- 287 (406)
T COG1222 222 -----VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG--F--DP----- 287 (406)
T ss_pred -----HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC--C--CC-----
Confidence 667777 3333444444599999999853 56899999999852 4 1 11
Q ss_pred ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 036633 341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRN 418 (550)
Q Consensus 341 d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l 418 (550)
..|+-|||+||.. ..++|+++ +|||..|.|+ ..+.+...+|++.+-.+
T Consensus 288 -~~nvKVI~ATNR~---------------------D~LDPALLRPGR~DRkIEfp---lPd~~gR~~Il~IHtrk----- 337 (406)
T COG1222 288 -RGNVKVIMATNRP---------------------DILDPALLRPGRFDRKIEFP---LPDEEGRAEILKIHTRK----- 337 (406)
T ss_pred -CCCeEEEEecCCc---------------------cccChhhcCCCcccceeecC---CCCHHHHHHHHHHHhhh-----
Confidence 1456699999985 57889998 9999999999 77888888888776632
Q ss_pred ccCCCccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 419 NDSKAVIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 419 ~~~~~~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
..+++++ ++.|+..+- |+||-+|+.++..
T Consensus 338 -------M~l~~dvd~e~la~~~~---g~sGAdlkaictE 367 (406)
T COG1222 338 -------MNLADDVDLELLARLTE---GFSGADLKAICTE 367 (406)
T ss_pred -------ccCccCcCHHHHHHhcC---CCchHHHHHHHHH
Confidence 1333333 455555332 4455778887765
No 69
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=2.5e-16 Score=179.22 Aligned_cols=189 Identities=15% Similarity=0.188 Sum_probs=137.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC-C----------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN-D---------------- 267 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~---------------- 267 (550)
..||||+++++.|.+++... +. ..+||+||+|||||++|++||+.|+... .
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 56899999999999998865 33 6799999999999999999999997511 0
Q ss_pred ---CCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCC
Q 036633 268 ---NDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTN 344 (550)
Q Consensus 268 ---~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~ 344 (550)
....++.+|.+.......+..++..+...-....|.|+||||+|+++.+.+|.||++|++- . .+
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp--P-----------~~ 150 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP--P-----------EH 150 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC--C-----------CC
Confidence 1223455554332222222222221111112345689999999999999999999999986 4 56
Q ss_pred eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633 345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV 424 (550)
Q Consensus 345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~ 424 (550)
++|||+|+.. ..+.+.+.+|| .+|.|. +++.+++..++...+.. .|+
T Consensus 151 ~~fIl~tt~~---------------------~kLl~TIrSRc-~~v~F~---~l~~~~l~~~L~~il~~-------EGv- 197 (824)
T PRK07764 151 LKFIFATTEP---------------------DKVIGTIRSRT-HHYPFR---LVPPEVMRGYLERICAQ-------EGV- 197 (824)
T ss_pred eEEEEEeCCh---------------------hhhhHHHHhhe-eEEEee---CCCHHHHHHHHHHHHHH-------cCC-
Confidence 7788877632 13456699999 899999 99999999888877743 455
Q ss_pred cccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++++++.+|+..+. | +.|.+.+.+++
T Consensus 198 --~id~eal~lLa~~sg---G-dlR~Al~eLEK 224 (824)
T PRK07764 198 --PVEPGVLPLVIRAGG---G-SVRDSLSVLDQ 224 (824)
T ss_pred --CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 789999999988653 5 66777777664
No 70
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.70 E-value=4.4e-16 Score=160.08 Aligned_cols=195 Identities=16% Similarity=0.151 Sum_probs=136.2
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++||++.++.+..++... . ..+..|.+++|+||||||||++|+++|+.+.. ++..++.+....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~---~---~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------~~~~~~~~~~~~--- 68 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAA---K---MRQEALDHLLLYGPPGLGKTTLAHIIANEMGV------NLKITSGPALEK--- 68 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHH---H---hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC------CEEEeccchhcC---
Confidence 46899999999988888654 1 11223478999999999999999999999865 555555443321
Q ss_pred hhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-C-----eEeecCCeEEEEeCCCChHHHH
Q 036633 286 IKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-I-----AAFDLTNTLIIMTSDLKDEQVY 359 (550)
Q Consensus 286 ~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g-----~~vd~~~~iiI~TsN~g~~~~~ 359 (550)
...+.+.+.. + ....|+|||||+.+++..++.|+.+++++... +.-+ + ........++|.+||..
T Consensus 69 ~~~l~~~l~~-~--~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~li~~t~~~----- 139 (305)
T TIGR00635 69 PGDLAAILTN-L--EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLD-IVIGKGPSARSVRLDLPPFTLVGATTRA----- 139 (305)
T ss_pred chhHHHHHHh-c--ccCCEEEEehHhhhCHHHHHHhhHHHhhhhee-eeeccCccccceeecCCCeEEEEecCCc-----
Confidence 1122222221 1 34579999999999999999999999877211 1111 1 11233445667766653
Q ss_pred HhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633 360 EVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN 439 (550)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~ 439 (550)
..+.+++.+||..++.|. |++.+++..++...+.. . .+.++++++++|++.
T Consensus 140 ----------------~~l~~~l~sR~~~~~~l~---~l~~~e~~~il~~~~~~-------~---~~~~~~~al~~ia~~ 190 (305)
T TIGR00635 140 ----------------GMLTSPLRDRFGIILRLE---FYTVEELAEIVSRSAGL-------L---NVEIEPEAALEIARR 190 (305)
T ss_pred ----------------cccCHHHHhhcceEEEeC---CCCHHHHHHHHHHHHHH-------h---CCCcCHHHHHHHHHH
Confidence 356788999998788999 99999999999876642 3 347899999999986
Q ss_pred CcccCCCcccHHHHHHcc
Q 036633 440 AARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 440 ~~~~~GaN~R~L~~~i~~ 457 (550)
+- | +.|.+.++++.
T Consensus 191 ~~---G-~pR~~~~ll~~ 204 (305)
T TIGR00635 191 SR---G-TPRIANRLLRR 204 (305)
T ss_pred hC---C-CcchHHHHHHH
Confidence 54 4 55766666664
No 71
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=3.6e-16 Score=172.27 Aligned_cols=185 Identities=19% Similarity=0.267 Sum_probs=135.8
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC-CC---------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN-DN--------------- 268 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~--------------- 268 (550)
..|+||+++++.+.+++... +. ..+||+||+|||||++|+++|+.++..+ ..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~ 84 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDA 84 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhc
Confidence 56999999999999988865 33 7899999999999999999999987621 00
Q ss_pred --CCceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 269 --DNHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 269 --~~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
.-.++.+|.+.-.....+. .+.+.+.. ..+.||+|||+++++...++.||+.|++. .
T Consensus 85 g~~~DvlEidaAs~~gVd~IR----elle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP--p----------- 147 (709)
T PRK08691 85 GRYVDLLEIDAASNTGIDNIR----EVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP--P----------- 147 (709)
T ss_pred cCccceEEEeccccCCHHHHH----HHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC--C-----------
Confidence 0112333332211111122 22222222 34579999999999999999999999976 4
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK 422 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~ 422 (550)
.+++||++||-. ....+.+++|| ..|.|. +++.+++...+...+.. .|
T Consensus 148 ~~v~fILaTtd~---------------------~kL~~TIrSRC-~~f~f~---~Ls~eeI~~~L~~Il~k-------Eg 195 (709)
T PRK08691 148 EHVKFILATTDP---------------------HKVPVTVLSRC-LQFVLR---NMTAQQVADHLAHVLDS-------EK 195 (709)
T ss_pred CCcEEEEEeCCc---------------------cccchHHHHHH-hhhhcC---CCCHHHHHHHHHHHHHH-------cC
Confidence 456788887642 34556789999 899999 99999999988887753 45
Q ss_pred CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ .++++++..|+..+. | |.|.+.+.+++
T Consensus 196 i---~id~eAL~~Ia~~A~---G-slRdAlnLLDq 223 (709)
T PRK08691 196 I---AYEPPALQLLGRAAA---G-SMRDALSLLDQ 223 (709)
T ss_pred C---CcCHHHHHHHHHHhC---C-CHHHHHHHHHH
Confidence 5 789999999998653 6 77888887765
No 72
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.70 E-value=3.5e-16 Score=162.60 Aligned_cols=192 Identities=17% Similarity=0.166 Sum_probs=138.2
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
..++||++.+..+...+... + .++.| .+++|+||||||||++|+++|+.+.. .+..++.+.+....
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~---~----~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~------~~~~~~~~~~~~~~ 91 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAA---K----KRGEALDHVLLYGPPGLGKTTLANIIANEMGV------NIRITSGPALEKPG 91 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHH---H----hcCCCCCcEEEECCCCccHHHHHHHHHHHhCC------CeEEEecccccChH
Confidence 56899999999988877654 2 11234 78999999999999999999999865 56656555443222
Q ss_pred hhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccc----cC--CeE--eecCCeEEEEeCCCChH
Q 036633 285 SIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKAT----RG--IAA--FDLTNTLIIMTSDLKDE 356 (550)
Q Consensus 285 ~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~----d~--g~~--vd~~~~iiI~TsN~g~~ 356 (550)
. +.+.+. .+ ..++|||||||+.+++.+++.|+..+++. . +. ++ .+. ......++|++||..
T Consensus 92 ~---l~~~l~-~l--~~~~vl~IDEi~~l~~~~~e~l~~~~e~~--~-~~~~l~~~~~~~~~~~~l~~~~li~at~~~-- 160 (328)
T PRK00080 92 D---LAAILT-NL--EEGDVLFIDEIHRLSPVVEEILYPAMEDF--R-LDIMIGKGPAARSIRLDLPPFTLIGATTRA-- 160 (328)
T ss_pred H---HHHHHH-hc--ccCCEEEEecHhhcchHHHHHHHHHHHhc--c-eeeeeccCccccceeecCCCceEEeecCCc--
Confidence 2 222222 11 35689999999999999999999999876 3 21 11 111 233445667777642
Q ss_pred HHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHH
Q 036633 357 QVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI 436 (550)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L 436 (550)
..+++++.+|++.++.|. +++.+++..|+...+.. . .+.++++++++|
T Consensus 161 -------------------~~l~~~L~sRf~~~~~l~---~~~~~e~~~il~~~~~~-------~---~~~~~~~~~~~i 208 (328)
T PRK00080 161 -------------------GLLTSPLRDRFGIVQRLE---FYTVEELEKIVKRSARI-------L---GVEIDEEGALEI 208 (328)
T ss_pred -------------------ccCCHHHHHhcCeeeecC---CCCHHHHHHHHHHHHHH-------c---CCCcCHHHHHHH
Confidence 356788999998889999 99999999999877643 3 347899999999
Q ss_pred HhcCcccCCCcccHHHHHHcc
Q 036633 437 ASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 437 ~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+..+- | +.|.+.+.+++
T Consensus 209 a~~~~---G-~pR~a~~~l~~ 225 (328)
T PRK00080 209 ARRSR---G-TPRIANRLLRR 225 (328)
T ss_pred HHHcC---C-CchHHHHHHHH
Confidence 98764 4 55766666664
No 73
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=3.5e-16 Score=172.67 Aligned_cols=186 Identities=17% Similarity=0.243 Sum_probs=134.9
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------ 267 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------ 267 (550)
+.||||++++..+.+++... + -|..+||+||+|||||++|+++|+.++..+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~---r-------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~ 85 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ---R-------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACR 85 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHH
Confidence 56899999999999988866 2 3478899999999999999999999975210
Q ss_pred -----CCCceeEEecCCCCchhhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCe
Q 036633 268 -----NDNHLIHFDMGNYTELESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIA 338 (550)
Q Consensus 268 -----~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~ 338 (550)
....++.+|.+.-.....+. .+.+.+...| |.|++|||+|.++.+.+|.||+.+++. .
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~iR----eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP--P------- 152 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDEVQ----QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP--P------- 152 (618)
T ss_pred HHHcCCCCceeecCcccccCHHHHH----HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC--C-------
Confidence 01123334432211111111 3334444334 679999999999999999999999987 4
Q ss_pred EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 036633 339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRN 418 (550)
Q Consensus 339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l 418 (550)
.+++||++|+-. ....+.+++|| .+|.|. +++.+++...+...+.+
T Consensus 153 ----~~~~fIL~Ttd~---------------------~kil~TIlSRc-~~~~f~---~Ls~eei~~~L~~i~~~----- 198 (618)
T PRK14951 153 ----EYLKFVLATTDP---------------------QKVPVTVLSRC-LQFNLR---PMAPETVLEHLTQVLAA----- 198 (618)
T ss_pred ----CCeEEEEEECCc---------------------hhhhHHHHHhc-eeeecC---CCCHHHHHHHHHHHHHH-----
Confidence 556778777532 23455699999 899999 99999999888877743
Q ss_pred ccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 419 NDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 419 ~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.|+ .++++++++|+..+- | +.|.+-+.+++
T Consensus 199 --egi---~ie~~AL~~La~~s~---G-slR~al~lLdq 228 (618)
T PRK14951 199 --ENV---PAEPQALRLLARAAR---G-SMRDALSLTDQ 228 (618)
T ss_pred --cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 455 789999999998643 5 56777666653
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=5e-16 Score=168.36 Aligned_cols=186 Identities=18% Similarity=0.242 Sum_probs=136.0
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------ 267 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------ 267 (550)
..++||++++..+..++... + -|..+||+||+|||||++|+++|+.+.....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~---r-------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~ 90 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND---R-------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCIS 90 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC---C-------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHH
Confidence 56899999999998888765 1 2479999999999999999999999975210
Q ss_pred ----CCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeE
Q 036633 268 ----NDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339 (550)
Q Consensus 268 ----~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~ 339 (550)
....++.+|.+.-.....+. .+.+..... .+.|++|||++.++...++.|++.+++. .
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir----~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep--p-------- 156 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIR----RIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP--P-------- 156 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHH----HHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc--C--------
Confidence 01133444432221111121 233333333 4579999999999999999999999987 5
Q ss_pred eecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 036633 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNN 419 (550)
Q Consensus 340 vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~ 419 (550)
.+++||++|+.. ..+.+.+.+|| ..+.|. +++.+++..++...+.+
T Consensus 157 ---~~~vfI~aTte~---------------------~kI~~tI~SRc-~~~ef~---~ls~~el~~~L~~i~~~------ 202 (507)
T PRK06645 157 ---PHIIFIFATTEV---------------------QKIPATIISRC-QRYDLR---RLSFEEIFKLLEYITKQ------ 202 (507)
T ss_pred ---CCEEEEEEeCCh---------------------HHhhHHHHhcc-eEEEcc---CCCHHHHHHHHHHHHHH------
Confidence 567777776532 23566799999 799999 99999999999888854
Q ss_pred cCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 420 DSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 420 ~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.|+ .++++++++|+..+. | +.|.+-+.+++
T Consensus 203 -egi---~ie~eAL~~Ia~~s~---G-slR~al~~Ldk 232 (507)
T PRK06645 203 -ENL---KTDIEALRIIAYKSE---G-SARDAVSILDQ 232 (507)
T ss_pred -cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 455 789999999998543 5 66877777775
No 75
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.70 E-value=1.8e-16 Score=155.01 Aligned_cols=201 Identities=17% Similarity=0.144 Sum_probs=142.7
Q ss_pred HHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633 199 RVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM 277 (550)
Q Consensus 199 ~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~ 277 (550)
.+....-..++||+++++.+.-.+..+ + ..+.+ -++||+||||.|||+||..||+.+.. ++-....
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AA---k----~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv------n~k~tsG 85 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAA---K----KRGEALDHVLLFGPPGLGKTTLAHIIANELGV------NLKITSG 85 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHH---H----hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC------CeEeccc
Confidence 343444467899999999998888876 2 12233 89999999999999999999999977 4443333
Q ss_pred CCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC------CeEeecCCeEEE-Ee
Q 036633 278 GNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG------IAAFDLTNTLII-MT 350 (550)
Q Consensus 278 s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~------g~~vd~~~~iiI-~T 350 (550)
..+..+.. +.+.||. -.|+.|+|+||||.++|.+-..|+.+||+-.+- +.-+ ...+|...-.+| +|
T Consensus 86 p~leK~gD---laaiLt~---Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lD-I~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 86 PALEKPGD---LAAILTN---LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLD-IIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred ccccChhh---HHHHHhc---CCcCCeEEEehhhhcChhHHHHhhhhhhheeEE-EEEccCCccceEeccCCCeeEeeec
Confidence 33322222 2223332 267899999999999999999999999987322 2222 134565554444 44
Q ss_pred CCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCH
Q 036633 351 SDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPST 430 (550)
Q Consensus 351 sN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~ 430 (550)
|..| .+..+|..||..+..+. -++.+|+..|+.+.-.. . .+.+++
T Consensus 159 Tr~G----------------------~lt~PLrdRFGi~~rle---fY~~~eL~~Iv~r~a~~-------l---~i~i~~ 203 (332)
T COG2255 159 TRAG----------------------MLTNPLRDRFGIIQRLE---FYTVEELEEIVKRSAKI-------L---GIEIDE 203 (332)
T ss_pred cccc----------------------cccchhHHhcCCeeeee---cCCHHHHHHHHHHHHHH-------h---CCCCCh
Confidence 4443 56777999999888999 99999999999875522 2 568999
Q ss_pred HHHHHHHhcCc--ccCCCcccHHHHHHc
Q 036633 431 SALVHIASNAA--RKYGQNGEGLKRWMD 456 (550)
Q Consensus 431 ~a~~~L~~~~~--~~~GaN~R~L~~~i~ 456 (550)
++...|+..+- |+..- |-|+|+-+
T Consensus 204 ~~a~eIA~rSRGTPRIAn--RLLrRVRD 229 (332)
T COG2255 204 EAALEIARRSRGTPRIAN--RLLRRVRD 229 (332)
T ss_pred HHHHHHHHhccCCcHHHH--HHHHHHHH
Confidence 99999998765 66664 66665544
No 76
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=4.1e-16 Score=170.92 Aligned_cols=185 Identities=20% Similarity=0.264 Sum_probs=134.8
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC-CC---------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN-DN--------------- 268 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~--------------- 268 (550)
+.|+||+++++.+.+++... +. ..+||+||+|||||++|+++|+.++... ..
T Consensus 16 ~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 56899999999999988865 33 6789999999999999999999997521 00
Q ss_pred --CCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 269 --DNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 269 --~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
...++.+|.+.-.....+. .+.+.+... ++.|++|||+|+++.+.+|.||+.+++. .
T Consensus 85 ~~~~d~~ei~~~~~~~vd~ir----~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep--p----------- 147 (527)
T PRK14969 85 GRFVDLIEVDAASNTQVDAMR----ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP--P----------- 147 (527)
T ss_pred CCCCceeEeeccccCCHHHHH----HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC--C-----------
Confidence 1123444433221111121 233333333 3579999999999999999999999986 4
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK 422 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~ 422 (550)
.+++||++|+-. ..+.+.+++|| .++.|. +++.+++...+...+.+ .|
T Consensus 148 ~~~~fIL~t~d~---------------------~kil~tI~SRc-~~~~f~---~l~~~~i~~~L~~il~~-------eg 195 (527)
T PRK14969 148 EHVKFILATTDP---------------------QKIPVTVLSRC-LQFNLK---QMPPPLIVSHLQHILEQ-------EN 195 (527)
T ss_pred CCEEEEEEeCCh---------------------hhCchhHHHHH-HHHhcC---CCCHHHHHHHHHHHHHH-------cC
Confidence 556677777532 34566799999 899999 99999999888777743 45
Q ss_pred CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ .++++++..|+..+. | +.|..-+.+++
T Consensus 196 i---~~~~~al~~la~~s~---G-slr~al~lldq 223 (527)
T PRK14969 196 I---PFDATALQLLARAAA---G-SMRDALSLLDQ 223 (527)
T ss_pred C---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 5 789999999998643 5 56777666664
No 77
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=7.3e-16 Score=167.67 Aligned_cols=186 Identities=20% Similarity=0.254 Sum_probs=137.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-----------------CC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-----------------DN 268 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-----------------~~ 268 (550)
+.|+||++++..+..++... + -|..+||+||||||||++|+++|+.++..+ ..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~---~-------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG---R-------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 46899999999998888865 1 236789999999999999999999997411 11
Q ss_pred CCceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCC
Q 036633 269 DNHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTN 344 (550)
Q Consensus 269 ~~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~ 344 (550)
...++.+|.+.......+ -.+.+.+.. .++.||+|||++.++...++.|++.+++. . .+
T Consensus 84 h~dv~el~~~~~~~vd~i----R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep--~-----------~~ 146 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDV----RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP--P-----------EH 146 (504)
T ss_pred CCceEEecccccCCHHHH----HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC--C-----------CC
Confidence 223555664422111111 133333333 34569999999999999999999999987 4 45
Q ss_pred eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633 345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV 424 (550)
Q Consensus 345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~ 424 (550)
+++|+++|.. ..+.+.+.+|+ .++.|. |++.+++...+...+.+ .|+
T Consensus 147 t~~Il~t~~~---------------------~kl~~~I~SRc-~~~~f~---~ls~~el~~~L~~i~~~-------egi- 193 (504)
T PRK14963 147 VIFILATTEP---------------------EKMPPTILSRT-QHFRFR---RLTEEEIAGKLRRLLEA-------EGR- 193 (504)
T ss_pred EEEEEEcCCh---------------------hhCChHHhcce-EEEEec---CCCHHHHHHHHHHHHHH-------cCC-
Confidence 6788877642 35677899999 799999 99999999998888754 555
Q ss_pred cccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++++++++|+..+- | +.|.+.+.+++
T Consensus 194 --~i~~~Al~~ia~~s~---G-dlR~aln~Lek 220 (504)
T PRK14963 194 --EAEPEALQLVARLAD---G-AMRDAESLLER 220 (504)
T ss_pred --CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 779999999998653 5 66777666664
No 78
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=6.8e-16 Score=168.55 Aligned_cols=187 Identities=19% Similarity=0.247 Sum_probs=136.0
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-----------------
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND----------------- 267 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~----------------- 267 (550)
-..++||+++++.+.+++... + -|.++||+||+|||||++|+++|+.+...+.
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~---r-------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNN---K-------LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINT 84 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcC---C-------CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHc
Confidence 356899999999999888765 1 2378999999999999999999999975210
Q ss_pred -CCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 268 -NDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 268 -~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
....++.+|.+.......+. .+.+.+... ++.|++|||++.++.+.++.|+..+++. .
T Consensus 85 ~~h~DiieIdaas~igVd~IR----eIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP--p----------- 147 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIR----NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP--P----------- 147 (605)
T ss_pred CCCCceEEeccccccCHHHHH----HHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC--C-----------
Confidence 01123444432211111111 333333333 4579999999999999999999999987 5
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK 422 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~ 422 (550)
.++++|++|+.. ..+.+.+.+|| .++.|. |++.+++...+...+.+ .|
T Consensus 148 ~~tvfIL~Tt~~---------------------~KLl~TI~SRc-q~ieF~---~Ls~~eL~~~L~~il~k-------eg 195 (605)
T PRK05896 148 KHVVFIFATTEF---------------------QKIPLTIISRC-QRYNFK---KLNNSELQELLKSIAKK-------EK 195 (605)
T ss_pred CcEEEEEECCCh---------------------HhhhHHHHhhh-hhcccC---CCCHHHHHHHHHHHHHH-------cC
Confidence 567788877642 24567799999 799999 99999999888877743 45
Q ss_pred CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ .++++++..|+..+. | +.|.+.+.+++
T Consensus 196 i---~Is~eal~~La~lS~---G-dlR~AlnlLek 223 (605)
T PRK05896 196 I---KIEDNAIDKIADLAD---G-SLRDGLSILDQ 223 (605)
T ss_pred C---CCCHHHHHHHHHHcC---C-cHHHHHHHHHH
Confidence 4 789999999998653 5 56777777764
No 79
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=7.1e-16 Score=169.22 Aligned_cols=185 Identities=17% Similarity=0.207 Sum_probs=133.7
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------------C
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------------D 267 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------~ 267 (550)
+.|+||++++..+.+++... + -+.++||+||+|||||++|+++|+.++... .
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~---r-------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g 85 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN---R-------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQG 85 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC---C-------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcC
Confidence 56899999999998888765 1 237999999999999999999999998521 0
Q ss_pred CCCceeEEecCCCCchhhhhhHHhHHHHHHH----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633 268 NDNHLIHFDMGNYTELESIKHFFDSLAALVK----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 268 ~~~~li~id~s~~~~~~~~s~liG~lt~al~----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
.+..++.+|.+.......+. .+.+.+. ..++.||+|||+++++.+.++.|++.+++. . .
T Consensus 86 ~hpDv~eId~a~~~~Id~iR----~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP--~-----------~ 148 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAK----RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP--P-----------A 148 (624)
T ss_pred CCCceEEEecccccCHHHHH----HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc--C-----------C
Confidence 11224555543211111122 2333333 245679999999999999999999999976 4 4
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA 423 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~ 423 (550)
+++||++||.. ..+.+.+.+|| .+|.|. +++.+++..++...+.. .|+
T Consensus 149 ~~ifILaTt~~---------------------~kll~TI~SRc-q~i~F~---pLs~~eL~~~L~~il~~-------egi 196 (624)
T PRK14959 149 RVTFVLATTEP---------------------HKFPVTIVSRC-QHFTFT---RLSEAGLEAHLTKVLGR-------EGV 196 (624)
T ss_pred CEEEEEecCCh---------------------hhhhHHHHhhh-hccccC---CCCHHHHHHHHHHHHHH-------cCC
Confidence 57788877742 24556689999 789999 99999999888876642 444
Q ss_pred ccccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633 424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMD 456 (550)
Q Consensus 424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~ 456 (550)
.+++++++.|+..+. | +.|..-+.++
T Consensus 197 ---~id~eal~lIA~~s~---G-dlR~Al~lLe 222 (624)
T PRK14959 197 ---DYDPAAVRLIARRAA---G-SVRDSMSLLG 222 (624)
T ss_pred ---CCCHHHHHHHHHHcC---C-CHHHHHHHHH
Confidence 789999999998653 5 4565555554
No 80
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=8e-16 Score=169.76 Aligned_cols=187 Identities=19% Similarity=0.254 Sum_probs=138.5
Q ss_pred hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC----------------
Q 036633 204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN---------------- 266 (550)
Q Consensus 204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~---------------- 266 (550)
--..|+||+++++.+.+++... +. ..+||+||+|||||++|+.+|+.+....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 3467999999999999998865 33 7899999999999999999999987521
Q ss_pred --CCCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEe
Q 036633 267 --DNDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340 (550)
Q Consensus 267 --~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~v 340 (550)
.....++.+|.+....... +..+.+.+... ++.|++|||+|.++.+.++.|++.+++. .
T Consensus 83 ~~g~~~dv~eidaas~~~vd~----ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep--p--------- 147 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDE----IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP--P--------- 147 (559)
T ss_pred hcCCCCCeEEeeccccCCHHH----HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC--C---------
Confidence 0123455565532211111 22344444433 4679999999999999999999999987 5
Q ss_pred ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633 341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND 420 (550)
Q Consensus 341 d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~ 420 (550)
.+++||++|+.. ..+.+.+.+|| ..+.|. +++.+++...+...+.+
T Consensus 148 --~~~ifIlatt~~---------------------~ki~~tI~SRc-~~~~f~---~~~~~ei~~~L~~i~~~------- 193 (559)
T PRK05563 148 --AHVIFILATTEP---------------------HKIPATILSRC-QRFDFK---RISVEDIVERLKYILDK------- 193 (559)
T ss_pred --CCeEEEEEeCCh---------------------hhCcHHHHhHh-eEEecC---CCCHHHHHHHHHHHHHH-------
Confidence 567788877632 34677899999 789999 99999999888777743
Q ss_pred CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.|+ .++++++..|+..+- | +.|...+.+++
T Consensus 194 egi---~i~~~al~~ia~~s~---G-~~R~al~~Ldq 223 (559)
T PRK05563 194 EGI---EYEDEALRLIARAAE---G-GMRDALSILDQ 223 (559)
T ss_pred cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 555 789999999998543 4 55777666664
No 81
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=6.6e-16 Score=171.17 Aligned_cols=187 Identities=18% Similarity=0.214 Sum_probs=137.0
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-C----------------
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-D---------------- 267 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~---------------- 267 (550)
-+.|+||++++..+.+++... + -|..+||+||+|||||++|+++|+.++... .
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~---~-------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTG---R-------VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 357999999999999988765 1 237889999999999999999999997511 0
Q ss_pred -CCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 268 -NDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 268 -~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
+...++.+|.+.......+ ..+.+.+... ++.|++|||+|.++...++.|++.||+. .
T Consensus 85 g~~~d~~eid~~s~~~v~~i----r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep--p----------- 147 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDI----RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP--P----------- 147 (576)
T ss_pred CCCCCeeeeeccCccCHHHH----HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC--C-----------
Confidence 1122444553322111122 2334444433 4579999999999999999999999987 5
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK 422 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~ 422 (550)
.+++||++||-. ..+.+.+++|| .+|.|. +++.+++...+...+.+ .|
T Consensus 148 ~~~~fIl~t~~~---------------------~kl~~tI~SRc-~~~~f~---~l~~~~i~~~L~~i~~~-------eg 195 (576)
T PRK14965 148 PHVKFIFATTEP---------------------HKVPITILSRC-QRFDFR---RIPLQKIVDRLRYIADQ-------EG 195 (576)
T ss_pred CCeEEEEEeCCh---------------------hhhhHHHHHhh-hhhhcC---CCCHHHHHHHHHHHHHH-------hC
Confidence 567788877642 24556799999 799999 99999998888777743 45
Q ss_pred CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ .++++++..|+..+- | +.|.+-+.+++
T Consensus 196 i---~i~~~al~~la~~a~---G-~lr~al~~Ldq 223 (576)
T PRK14965 196 I---SISDAALALVARKGD---G-SMRDSLSTLDQ 223 (576)
T ss_pred C---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 5 789999999998653 4 55766666654
No 82
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.67 E-value=2.6e-15 Score=155.10 Aligned_cols=189 Identities=12% Similarity=0.115 Sum_probs=137.6
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++||++++..+...+... ..|..++|+||||+|||++|+++++.+.. +++.+|++. .....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~----------~~~~~lll~G~~G~GKT~la~~l~~~~~~------~~~~i~~~~-~~~~~ 83 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG----------RIPNMLLHSPSPGTGKTTVAKALCNEVGA------EVLFVNGSD-CRIDF 83 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCc------cceEeccCc-ccHHH
Confidence 56899999999888887754 13478888999999999999999998865 788899887 22111
Q ss_pred hhhHHhHHHHHHH-hCCCCeEEecccccc-CHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhh
Q 036633 286 IKHFFDSLAALVK-KRPYSVVLFDKIEKA-NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVML 363 (550)
Q Consensus 286 ~s~liG~lt~al~-~~p~~VlllDEIeka-~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~ 363 (550)
+...+..+..... ..++.||+|||++.+ ..+.++.|..++++. . +++.||+|||..
T Consensus 84 i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~--~-----------~~~~~Ilt~n~~--------- 141 (316)
T PHA02544 84 VRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY--S-----------KNCSFIITANNK--------- 141 (316)
T ss_pred HHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc--C-----------CCceEEEEcCCh---------
Confidence 1111112222111 134689999999999 777888888888875 4 456789999853
Q ss_pred hhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCccc
Q 036633 364 TATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARK 443 (550)
Q Consensus 364 ~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~ 443 (550)
..+.|.+.+|| .++.|. +++.++...++...+..+...+...|+ .++++++.+++..++
T Consensus 142 ------------~~l~~~l~sR~-~~i~~~---~p~~~~~~~il~~~~~~~~~~~~~~~~---~i~~~al~~l~~~~~-- 200 (316)
T PHA02544 142 ------------NGIIEPLRSRC-RVIDFG---VPTKEEQIEMMKQMIVRCKGILEAEGV---EVDMKVLAALVKKNF-- 200 (316)
T ss_pred ------------hhchHHHHhhc-eEEEeC---CCCHHHHHHHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhcC--
Confidence 34668899999 689998 888888888888877776655555666 779999999998765
Q ss_pred CCCcccHHHHHHc
Q 036633 444 YGQNGEGLKRWMD 456 (550)
Q Consensus 444 ~GaN~R~L~~~i~ 456 (550)
| +.|.+-+.++
T Consensus 201 -~-d~r~~l~~l~ 211 (316)
T PHA02544 201 -P-DFRRTINELQ 211 (316)
T ss_pred -C-CHHHHHHHHH
Confidence 3 3354444444
No 83
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.7e-15 Score=168.54 Aligned_cols=187 Identities=20% Similarity=0.280 Sum_probs=133.5
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCC---------------C
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDN---------------D 269 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~---------------~ 269 (550)
-..|+||+++++.+..++... + -|..+||+||+|||||++|+++|+.++..... +
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~---r-------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~ 86 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSN---K-------ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNS 86 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCC
Confidence 356899999999999988865 1 23788999999999999999999999762100 0
Q ss_pred CceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633 270 NHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNT 345 (550)
Q Consensus 270 ~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ 345 (550)
-.++.+|.+.-. .+. -+..+.+.+... ++.|++|||++.++++.++.||+.|++. . .++
T Consensus 87 ~Dvieidaasn~---~vd-~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP--P-----------~~t 149 (725)
T PRK07133 87 LDIIEMDAASNN---GVD-EIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP--P-----------KHV 149 (725)
T ss_pred CcEEEEeccccC---CHH-HHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC--C-----------Cce
Confidence 011222211100 011 022444555544 4579999999999999999999999987 5 556
Q ss_pred EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633 346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI 425 (550)
Q Consensus 346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~ 425 (550)
++|++|+.. ..+.|.+++|| .++.|. |++.+++...+...+.+ .|+
T Consensus 150 ifILaTte~---------------------~KLl~TI~SRc-q~ieF~---~L~~eeI~~~L~~il~k-------egI-- 195 (725)
T PRK07133 150 IFILATTEV---------------------HKIPLTILSRV-QRFNFR---RISEDEIVSRLEFILEK-------ENI-- 195 (725)
T ss_pred EEEEEcCCh---------------------hhhhHHHHhhc-eeEEcc---CCCHHHHHHHHHHHHHH-------cCC--
Confidence 777777532 24567799999 799999 99999999888876643 455
Q ss_pred ccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 426 VCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 426 l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++++++..|+..+. | +.|.+.+.+++
T Consensus 196 -~id~eAl~~LA~lS~---G-slR~AlslLek 222 (725)
T PRK07133 196 -SYEKNALKLIAKLSS---G-SLRDALSIAEQ 222 (725)
T ss_pred -CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 789999999988543 4 55766666553
No 84
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2e-15 Score=163.98 Aligned_cols=186 Identities=18% Similarity=0.245 Sum_probs=134.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CC----------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DN---------------- 268 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~---------------- 268 (550)
..|+||+++++.+..++... + -|.++||+||+|+|||++|+++|+.+.... ..
T Consensus 14 deiiGqe~v~~~L~~~I~~g---r-------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~ 83 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN---R-------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALEN 83 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC---C-------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhc
Confidence 56999999999999888765 1 337889999999999999999999997521 00
Q ss_pred -CCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633 269 -DNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 269 -~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
+..++.+|.+.-.....+. .+.+..... ++.|++|||++.++++.++.||+.+++. . .
T Consensus 84 ~h~dv~eldaas~~gId~IR----elie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp--p-----------~ 146 (535)
T PRK08451 84 RHIDIIEMDAASNRGIDDIR----ELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP--P-----------S 146 (535)
T ss_pred CCCeEEEeccccccCHHHHH----HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc--C-----------C
Confidence 1123333322111111111 222222223 4579999999999999999999999987 5 5
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA 423 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~ 423 (550)
+++||++|+-. ..+.|.+.+|+ .++.|. |++.+++...+...+.+ .|+
T Consensus 147 ~t~FIL~ttd~---------------------~kL~~tI~SRc-~~~~F~---~Ls~~ei~~~L~~Il~~-------EGi 194 (535)
T PRK08451 147 YVKFILATTDP---------------------LKLPATILSRT-QHFRFK---QIPQNSIISHLKTILEK-------EGV 194 (535)
T ss_pred ceEEEEEECCh---------------------hhCchHHHhhc-eeEEcC---CCCHHHHHHHHHHHHHH-------cCC
Confidence 67788877642 24567899999 799999 99999999888777754 555
Q ss_pred ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++++++.+|+..+. | +.|.+-+.+++
T Consensus 195 ---~i~~~Al~~Ia~~s~---G-dlR~alnlLdq 221 (535)
T PRK08451 195 ---SYEPEALEILARSGN---G-SLRDTLTLLDQ 221 (535)
T ss_pred ---CCCHHHHHHHHHHcC---C-cHHHHHHHHHH
Confidence 789999999998653 5 56777777664
No 85
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2.3e-15 Score=162.18 Aligned_cols=186 Identities=20% Similarity=0.276 Sum_probs=134.6
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------ 267 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------ 267 (550)
+.|+||++++..+.+++... + -|.++||+||+|+|||++|+++|+.++....
T Consensus 17 ~diiGq~~~v~~L~~~i~~~---~-------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~ 86 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN---R-------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISS 86 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC---C-------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhc
Confidence 57999999999988888765 1 2378999999999999999999999976210
Q ss_pred -CCCceeEEecCCCCchhhhhhHHhHHHHHHH----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 268 -NDNHLIHFDMGNYTELESIKHFFDSLAALVK----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 268 -~~~~li~id~s~~~~~~~~s~liG~lt~al~----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
.+-.++.++.+.......+. .+.+.+. ..++.||+|||+++++.+.++.|++++++. .
T Consensus 87 ~~~~d~~~i~g~~~~gid~ir----~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep--~----------- 149 (451)
T PRK06305 87 GTSLDVLEIDGASHRGIEDIR----QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP--P----------- 149 (451)
T ss_pred CCCCceEEeeccccCCHHHHH----HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC--C-----------
Confidence 01123444432211111111 2233332 245689999999999999999999999986 4
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK 422 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~ 422 (550)
.++++|++||.. ..+.+.+.+|+ .++.|. +++.+++...+...+.+ .|
T Consensus 150 ~~~~~Il~t~~~---------------------~kl~~tI~sRc-~~v~f~---~l~~~el~~~L~~~~~~-------eg 197 (451)
T PRK06305 150 QHVKFFLATTEI---------------------HKIPGTILSRC-QKMHLK---RIPEETIIDKLALIAKQ-------EG 197 (451)
T ss_pred CCceEEEEeCCh---------------------HhcchHHHHhc-eEEeCC---CCCHHHHHHHHHHHHHH-------cC
Confidence 456678777632 24557799999 799999 99999999888776643 45
Q ss_pred CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ .+++++++.|+..+- | |.|.+.+.+++
T Consensus 198 ~---~i~~~al~~L~~~s~---g-dlr~a~~~Lek 225 (451)
T PRK06305 198 I---ETSREALLPIARAAQ---G-SLRDAESLYDY 225 (451)
T ss_pred C---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 5 789999999998653 5 66777666664
No 86
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=2.8e-15 Score=164.97 Aligned_cols=187 Identities=19% Similarity=0.218 Sum_probs=134.2
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CC---------------
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DN--------------- 268 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~--------------- 268 (550)
-..|+||++++..+..++... + -|..+||+||+|+|||++|+++|+.++..+ ..
T Consensus 15 f~diiGqe~iv~~L~~~i~~~---~-------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~ 84 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESN---K-------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDN 84 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHc
Confidence 357999999999999888865 1 237899999999999999999999997521 00
Q ss_pred --CCceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 269 --DNHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 269 --~~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
.-.++.+|.+.- ..+..+. .+.+.+.. .++.|+++||++.++...++.||+.+++. .
T Consensus 85 ~~~~dv~~idgas~---~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep--p----------- 147 (563)
T PRK06647 85 DNSLDVIEIDGASN---TSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP--P----------- 147 (563)
T ss_pred CCCCCeEEecCccc---CCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccC--C-----------
Confidence 112334432211 1111111 22222232 44679999999999999999999999987 5
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK 422 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~ 422 (550)
.+++||++|+-. ..+.+.+.+|| .++.|. +++.+++...+...+.. .|
T Consensus 148 ~~~vfI~~tte~---------------------~kL~~tI~SRc-~~~~f~---~l~~~el~~~L~~i~~~-------eg 195 (563)
T PRK06647 148 PYIVFIFATTEV---------------------HKLPATIKSRC-QHFNFR---LLSLEKIYNMLKKVCLE-------DQ 195 (563)
T ss_pred CCEEEEEecCCh---------------------HHhHHHHHHhc-eEEEec---CCCHHHHHHHHHHHHHH-------cC
Confidence 567788877531 23557799999 789999 99999998888776643 45
Q ss_pred CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ .++++++.+|+..+- | +.|.+.+.+++
T Consensus 196 i---~id~eAl~lLa~~s~---G-dlR~alslLdk 223 (563)
T PRK06647 196 I---KYEDEALKWIAYKST---G-SVRDAYTLFDQ 223 (563)
T ss_pred C---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 5 789999999998543 4 66877777764
No 87
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.65 E-value=4.7e-15 Score=154.23 Aligned_cols=187 Identities=20% Similarity=0.315 Sum_probs=133.9
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++||++++..+..++... ++.+++|+||||||||++|+++++.+++.+ ...+++.+|++++.....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~-----------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~ 82 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP-----------NLPHLLVQGPPGSGKTAAVRALARELYGDP-WENNFTEFNVADFFDQGK 82 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC-----------CCceEEEECCCCCCHHHHHHHHHHHhcCcc-cccceEEechhhhhhcch
Confidence 45789999999988877644 334789999999999999999999997611 134678899887642110
Q ss_pred --------hhhH-----------HhHHHHHH----Hh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCe
Q 036633 286 --------IKHF-----------FDSLAALV----KK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIA 338 (550)
Q Consensus 286 --------~s~l-----------iG~lt~al----~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~ 338 (550)
.... ...+.+.+ .. .++.+|+|||++.++++.++.|+.++++. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~--~------- 153 (337)
T PRK12402 83 KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY--S------- 153 (337)
T ss_pred hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc--c-------
Confidence 0000 11122111 11 33569999999999999999999999876 4
Q ss_pred EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 036633 339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRN 418 (550)
Q Consensus 339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l 418 (550)
.++.||+|++.. ..+.+.+.+|+ ..+.|. |++.+++..++...+.+
T Consensus 154 ----~~~~~Il~~~~~---------------------~~~~~~L~sr~-~~v~~~---~~~~~~~~~~l~~~~~~----- 199 (337)
T PRK12402 154 ----RTCRFIIATRQP---------------------SKLIPPIRSRC-LPLFFR---APTDDELVDVLESIAEA----- 199 (337)
T ss_pred ----CCCeEEEEeCCh---------------------hhCchhhcCCc-eEEEec---CCCHHHHHHHHHHHHHH-----
Confidence 345577776632 13445688998 789999 99999998888877643
Q ss_pred ccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633 419 NDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMD 456 (550)
Q Consensus 419 ~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~ 456 (550)
.|+ .+++++++.|+..+- | |.|.+.+.++
T Consensus 200 --~~~---~~~~~al~~l~~~~~---g-dlr~l~~~l~ 228 (337)
T PRK12402 200 --EGV---DYDDDGLELIAYYAG---G-DLRKAILTLQ 228 (337)
T ss_pred --cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHH
Confidence 555 689999999998652 6 7787766665
No 88
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.5e-15 Score=159.99 Aligned_cols=187 Identities=17% Similarity=0.205 Sum_probs=132.1
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-----------------
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND----------------- 267 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~----------------- 267 (550)
-..|+||+.+++.+.+++... +-|..+||+||+|||||++|+++|+.++....
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c 84 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMG----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC 84 (397)
T ss_pred HhhccChHHHHHHHHHHHHhC----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence 357999999999888887755 13367999999999999999999999976210
Q ss_pred ---------CCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccc
Q 036633 268 ---------NDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKAT 334 (550)
Q Consensus 268 ---------~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~ 334 (550)
.+-+++.+|.+.......+. .+.+.+... ++.||++||+++++...++.|+..+++. .
T Consensus 85 ~~c~~~~~~~~~n~~~~~~~~~~~id~Ir----~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep--~--- 155 (397)
T PRK14955 85 ESCRDFDAGTSLNISEFDAASNNSVDDIR----LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP--P--- 155 (397)
T ss_pred HHHHHHhcCCCCCeEeecccccCCHHHHH----HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC--C---
Confidence 00123334332211111111 333444433 4579999999999999999999999987 4
Q ss_pred cCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH
Q 036633 335 RGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET 414 (550)
Q Consensus 335 d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~ 414 (550)
..++||++++.. ..+.+.+.+|+ .++.|. |++.+++...+...+..
T Consensus 156 --------~~t~~Il~t~~~---------------------~kl~~tl~sR~-~~v~f~---~l~~~ei~~~l~~~~~~- 201 (397)
T PRK14955 156 --------PHAIFIFATTEL---------------------HKIPATIASRC-QRFNFK---RIPLEEIQQQLQGICEA- 201 (397)
T ss_pred --------CCeEEEEEeCCh---------------------HHhHHHHHHHH-HHhhcC---CCCHHHHHHHHHHHHHH-
Confidence 456677766531 23446789999 799999 99999999888877643
Q ss_pred HHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 415 KRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 415 ~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.|+ .++++++++|+..+- | |.|.+.+.+++
T Consensus 202 ------~g~---~i~~~al~~l~~~s~---g-~lr~a~~~L~k 231 (397)
T PRK14955 202 ------EGI---SVDADALQLIGRKAQ---G-SMRDAQSILDQ 231 (397)
T ss_pred ------cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 444 789999999998643 4 56766665553
No 89
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=3.7e-15 Score=164.78 Aligned_cols=187 Identities=18% Similarity=0.233 Sum_probs=135.1
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-CC--------------
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-ND-------------- 269 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-~~-------------- 269 (550)
-..|+||+++++.+.+++... + -|..+||+||+|||||++|+++|+.++..+. ..
T Consensus 23 f~dliGq~~~v~~L~~~~~~g---r-------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C 92 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETG---R-------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHC 92 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcC---C-------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHH
Confidence 357999999999999998866 1 2478999999999999999999999975210 00
Q ss_pred --------CceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCC
Q 036633 270 --------NHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGI 337 (550)
Q Consensus 270 --------~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g 337 (550)
..++.+|.+.......+. .+.+.++.. ++.||+|||++.++...++.||+.|++. .
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IR----eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP--p------ 160 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIR----EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP--P------ 160 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHH----HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC--C------
Confidence 112223222111111111 344444443 4679999999999999999999999986 4
Q ss_pred eEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 036633 338 AAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRR 417 (550)
Q Consensus 338 ~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~ 417 (550)
.+++||++|+-. ....+.+.+|| .+|.|. +++.+++...+...+.+
T Consensus 161 -----~~~~fIl~tte~---------------------~kll~tI~SRc-q~~~f~---~l~~~el~~~L~~i~~k---- 206 (598)
T PRK09111 161 -----PHVKFIFATTEI---------------------RKVPVTVLSRC-QRFDLR---RIEADVLAAHLSRIAAK---- 206 (598)
T ss_pred -----CCeEEEEEeCCh---------------------hhhhHHHHhhe-eEEEec---CCCHHHHHHHHHHHHHH----
Confidence 456778777532 12445689999 799999 99999999998887753
Q ss_pred hccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 418 NNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 418 l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.|+ .++++++++|+..+- | +.|.+.+.+++
T Consensus 207 ---egi---~i~~eAl~lIa~~a~---G-dlr~al~~Ldk 236 (598)
T PRK09111 207 ---EGV---EVEDEALALIARAAE---G-SVRDGLSLLDQ 236 (598)
T ss_pred ---cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 455 789999999998643 4 56777777664
No 90
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.65 E-value=2.7e-15 Score=162.14 Aligned_cols=194 Identities=17% Similarity=0.196 Sum_probs=130.3
Q ss_pred CcccCcHHHHHHHHHHHhcch--hhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633 206 KRVFGQNDAIDVIFEALTKPK--AAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL 283 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~--~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~ 283 (550)
+.|.|.+.+++.+........ ....|+. .|..+||+||||||||.+|+++|..+.. +|++++++.+...
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~---~pkGILL~GPpGTGKTllAkaiA~e~~~------~~~~l~~~~l~~~ 298 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLP---TPRGLLLVGIQGTGKSLTAKAIANDWQL------PLLRLDVGKLFGG 298 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCC---CCceEEEECCCCCcHHHHHHHHHHHhCC------CEEEEEhHHhccc
Confidence 357888888876665332110 0133443 3468999999999999999999999877 9999999865322
Q ss_pred hh--hhhHHhHHHHHHHhCCCCeEEeccccccCH------------HHHHHHHHhhhhccccccccCCeEeecCCeEEEE
Q 036633 284 ES--IKHFFDSLAALVKKRPYSVVLFDKIEKANS------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIM 349 (550)
Q Consensus 284 ~~--~s~liG~lt~al~~~p~~VlllDEIeka~~------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~ 349 (550)
.. ....+..+....+....+||||||||++.+ .+++.|+..+++. . ++++||+
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~--~-----------~~V~vIa 365 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK--K-----------SPVFVVA 365 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC--C-----------CceEEEE
Confidence 10 001111222333333449999999997643 2556677777654 3 4578999
Q ss_pred eCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 036633 350 TSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVC 427 (550)
Q Consensus 350 TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~ 427 (550)
|||.. ..++|+++ +|||.+|.+. ..+.++...|+..++.+. +. -.
T Consensus 366 TTN~~---------------------~~Ld~allR~GRFD~~i~v~---lP~~~eR~~Il~~~l~~~-------~~--~~ 412 (489)
T CHL00195 366 TANNI---------------------DLLPLEILRKGRFDEIFFLD---LPSLEEREKIFKIHLQKF-------RP--KS 412 (489)
T ss_pred ecCCh---------------------hhCCHHHhCCCcCCeEEEeC---CcCHHHHHHHHHHHHhhc-------CC--Cc
Confidence 99964 46788887 4999999999 779999999999998652 11 01
Q ss_pred CCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 428 PSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 428 ~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++.-++.|+..+. |.+|.+|++++..
T Consensus 413 ~~~~dl~~La~~T~---GfSGAdI~~lv~e 439 (489)
T CHL00195 413 WKKYDIKKLSKLSN---KFSGAEIEQSIIE 439 (489)
T ss_pred ccccCHHHHHhhcC---CCCHHHHHHHHHH
Confidence 22334566776432 4466899998885
No 91
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.65 E-value=3e-14 Score=159.01 Aligned_cols=201 Identities=18% Similarity=0.197 Sum_probs=135.3
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~ 281 (550)
..++||+.++..+...+... .|.+++|+||||||||++|++++....... ..+.+|+.+||+.+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~-----------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~ 222 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP-----------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR 222 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC-----------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc
Confidence 45899999999887666433 456899999999999999999998774211 024589999998763
Q ss_pred ch-hh-hhhHHhHH---------------------HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC--
Q 036633 282 EL-ES-IKHFFDSL---------------------AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-- 336 (550)
Q Consensus 282 ~~-~~-~s~liG~l---------------------t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-- 336 (550)
.. .. ...++|.. ...+....++||||||++.+++..|+.|+++++++.+. +.++
T Consensus 223 ~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~-~~~~~~ 301 (615)
T TIGR02903 223 WDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVE-FSSSYY 301 (615)
T ss_pred CCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEE-eeccee
Confidence 11 11 11233311 00112334689999999999999999999999998322 2111
Q ss_pred ---CeE-----------eecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHH
Q 036633 337 ---IAA-----------FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTT 402 (550)
Q Consensus 337 ---g~~-----------vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~ 402 (550)
+.. ..-.+.++|.+|+... ..++|.|.+|| ..+.|. ||+.++
T Consensus 302 ~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~--------------------~~l~~aLrSR~-~~i~~~---pls~ed 357 (615)
T TIGR02903 302 DPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP--------------------EEINPALRSRC-AEVFFE---PLTPED 357 (615)
T ss_pred ccCCcccchhhhhhcccCccceEEEEEeccccc--------------------cccCHHHHhce-eEEEeC---CCCHHH
Confidence 000 0112244554444321 34678899999 578899 999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 403 RLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 403 i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+..|+...+.+ .++ .+++++++.|..++| ++|..-+.++.
T Consensus 358 i~~Il~~~a~~-------~~v---~ls~eal~~L~~ys~-----~gRraln~L~~ 397 (615)
T TIGR02903 358 IALIVLNAAEK-------INV---HLAAGVEELIARYTI-----EGRKAVNILAD 397 (615)
T ss_pred HHHHHHHHHHH-------cCC---CCCHHHHHHHHHCCC-----cHHHHHHHHHH
Confidence 99999987753 333 689999999999877 22544455554
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.65 E-value=4.6e-15 Score=155.59 Aligned_cols=187 Identities=20% Similarity=0.271 Sum_probs=133.7
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-----------------
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND----------------- 267 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~----------------- 267 (550)
-..++||+.++..+...+... + -|.++||+||||+|||++|+.+++.+.....
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~---~-------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~ 82 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNG---R-------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINS 82 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 356899999999999888755 1 2378999999999999999999999875210
Q ss_pred -CCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 268 -NDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 268 -~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
.+..++.+|.+.......+. .+.+.+... ++.||++||++.++...++.|++.+++. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~--~----------- 145 (355)
T TIGR02397 83 GSSLDVIEIDAASNNGVDDIR----EILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP--P----------- 145 (355)
T ss_pred CCCCCEEEeeccccCCHHHHH----HHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC--c-----------
Confidence 02235555544222211222 233333333 3469999999999999999999999875 4
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK 422 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~ 422 (550)
.++++|+++|.. ..+.+.+.+|+ ..+.|. |++.+++..++...+.+ .|
T Consensus 146 ~~~~lIl~~~~~---------------------~~l~~~l~sr~-~~~~~~---~~~~~~l~~~l~~~~~~-------~g 193 (355)
T TIGR02397 146 EHVVFILATTEP---------------------HKIPATILSRC-QRFDFK---RIPLEDIVERLKKILDK-------EG 193 (355)
T ss_pred cceeEEEEeCCH---------------------HHHHHHHHhhe-eEEEcC---CCCHHHHHHHHHHHHHH-------cC
Confidence 456677777532 12345688999 789999 99999999888887753 45
Q ss_pred CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ .++++++.+|+..+- | +.|.+.+.+++
T Consensus 194 ~---~i~~~a~~~l~~~~~---g-~~~~a~~~lek 221 (355)
T TIGR02397 194 I---KIEDEALELIARAAD---G-SLRDALSLLDQ 221 (355)
T ss_pred C---CCCHHHHHHHHHHcC---C-ChHHHHHHHHH
Confidence 5 789999999998542 4 55767666654
No 93
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.65 E-value=3.2e-15 Score=158.94 Aligned_cols=227 Identities=16% Similarity=0.132 Sum_probs=151.5
Q ss_pred HHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633 194 EERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI 273 (550)
Q Consensus 194 ~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li 273 (550)
.+++..+...|++.|+|++++++.+..++... +++||.||||||||++|++||..+.. .. +|.
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aalag-------------~hVLL~GpPGTGKT~LAraLa~~~~~---~~-~F~ 70 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALSG-------------ESVFLLGPPGIAKSLIARRLKFAFQN---AR-AFE 70 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHccC-------------CCEEEECCCChhHHHHHHHHHHHhcc---cC-cce
Confidence 46688899999999999999999988888755 69999999999999999999998765 32 666
Q ss_pred EEecCCCCchhhhhhHHhHH--HH-----HH-HhCC-----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEe
Q 036633 274 HFDMGNYTELESIKHFFDSL--AA-----LV-KKRP-----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340 (550)
Q Consensus 274 ~id~s~~~~~~~~s~liG~l--t~-----al-~~~p-----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~v 340 (550)
.+++.-.+ .+.++|.+ .. .. +..+ ..+||+|||.+++|.+|+.||++++++ . ++.+|+..
T Consensus 71 ~~~~~ftt----p~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er--~-~t~g~~~~ 143 (498)
T PRK13531 71 YLMTRFST----PEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINER--R-FRNGAHEE 143 (498)
T ss_pred eeeeeecC----cHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhC--e-EecCCeEE
Confidence 65554222 23556622 11 11 1111 248999999999999999999999999 7 77777777
Q ss_pred ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC-HHHHHHHHHHHHH-------
Q 036633 341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL-DTTRLLLREWACE------- 412 (550)
Q Consensus 341 d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~-~e~i~~I~~~~l~------- 412 (550)
...--+|+++||.-.+ .+.|.+++++||-..|..+ |++ .++...++...-.
T Consensus 144 ~lp~rfiv~ATN~LPE------------------~g~~leAL~DRFliri~vp---~l~~~~~e~~lL~~~~~~~~~~~~ 202 (498)
T PRK13531 144 KIPMRLLVTASNELPE------------------ADSSLEALYDRMLIRLWLD---KVQDKANFRSMLTSQQDENDNPVP 202 (498)
T ss_pred eCCCcEEEEECCCCcc------------------cCCchHHhHhhEEEEEECC---CCCchHHHHHHHHcccccccCCCc
Confidence 7777778888884221 2578899999993334444 775 4555666543211
Q ss_pred --------HHHHHhccCCCccccCCHHHHHHHHhcC-----cc-cCCCcccHHHHHHcchhhHHHHHhhh
Q 036633 413 --------ETKRRNNDSKAVIVCPSTSALVHIASNA-----AR-KYGQNGEGLKRWMDQRPSADHVIDKF 468 (550)
Q Consensus 413 --------~~~~~l~~~~~~~l~~~~~a~~~L~~~~-----~~-~~GaN~R~L~~~i~~~~la~~~l~~~ 468 (550)
++ ..+...-- .+.+++.+.++|.... .. ...++-|....++.- .=|.+++.|.
T Consensus 203 ~~~vis~eel-~~lq~~v~-~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~-akA~A~l~GR 269 (498)
T PRK13531 203 ASLQITDEEY-QQWQKEIG-KITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRL-LQASAFFSGR 269 (498)
T ss_pred ccCCCCHHHH-HHHHHHhc-ceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHH-HHHHHHHCCC
Confidence 11 01111111 4678999999887632 11 111233666555553 3355566653
No 94
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.5e-15 Score=160.97 Aligned_cols=185 Identities=23% Similarity=0.339 Sum_probs=133.0
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCC---------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDND--------------- 269 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~--------------- 269 (550)
..++||++++..+.+++... +. ..+||+||+|+|||++|+.+|+.++..+...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~ 84 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDK 84 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhc
Confidence 56899999999999988865 34 6789999999999999999999997411010
Q ss_pred ---CceeEEecCCCCchhhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 270 ---NHLIHFDMGNYTELESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 270 ---~~li~id~s~~~~~~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
..++.+|.+.-..... +..+.+.+...| +.|+++||++.++.+.++.|+..+++. .
T Consensus 85 g~~~d~~eidaas~~gvd~----ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep--p----------- 147 (486)
T PRK14953 85 GSFPDLIEIDAASNRGIDD----IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP--P----------- 147 (486)
T ss_pred CCCCcEEEEeCccCCCHHH----HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC--C-----------
Confidence 1222333211110001 114445555444 469999999999999999999999987 4
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK 422 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~ 422 (550)
.++++|++|+-. ..+.+.+.+|+ ..+.|. |++.+++..++...+.. .|
T Consensus 148 ~~~v~Il~tt~~---------------------~kl~~tI~SRc-~~i~f~---~ls~~el~~~L~~i~k~-------eg 195 (486)
T PRK14953 148 PRTIFILCTTEY---------------------DKIPPTILSRC-QRFIFS---KPTKEQIKEYLKRICNE-------EK 195 (486)
T ss_pred CCeEEEEEECCH---------------------HHHHHHHHHhc-eEEEcC---CCCHHHHHHHHHHHHHH-------cC
Confidence 456677666521 23456789999 799999 99999999888877753 55
Q ss_pred CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ .++++++++|+..+- | |.|.+-+.+++
T Consensus 196 i---~id~~al~~La~~s~---G-~lr~al~~Ldk 223 (486)
T PRK14953 196 I---EYEEKALDLLAQASE---G-GMRDAASLLDQ 223 (486)
T ss_pred C---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 5 789999999998543 5 66877777764
No 95
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=8.7e-15 Score=162.10 Aligned_cols=187 Identities=17% Similarity=0.214 Sum_probs=132.5
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-----------------
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND----------------- 267 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~----------------- 267 (550)
-+.|+||++++..+.+++... +-|..+||+||+|||||++|+.+|+.++....
T Consensus 15 f~eivGQe~i~~~L~~~i~~~----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMD----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcC----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 357899999999988888754 13368999999999999999999999976210
Q ss_pred ---------CCCceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccc
Q 036633 268 ---------NDNHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKAT 334 (550)
Q Consensus 268 ---------~~~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~ 334 (550)
.+-+++.+|.+.......+. .+.+.+.. .++.||++||+++++...++.|++.|++. .
T Consensus 85 ~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir----~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP--p--- 155 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDAASNNSVDDIR----QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP--P--- 155 (620)
T ss_pred HHHHHHhccCCCCeEEecccccCCHHHHH----HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC--C---
Confidence 01123334332211111111 23344433 34579999999999999999999999986 4
Q ss_pred cCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH
Q 036633 335 RGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET 414 (550)
Q Consensus 335 d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~ 414 (550)
..++||++++-. ..+.+.+.+|+ .+|.|. +++.+++...+...+..
T Consensus 156 --------~~tv~IL~t~~~---------------------~kLl~TI~SRc-~~vef~---~l~~~ei~~~L~~i~~~- 201 (620)
T PRK14954 156 --------PHAIFIFATTEL---------------------HKIPATIASRC-QRFNFK---RIPLDEIQSQLQMICRA- 201 (620)
T ss_pred --------CCeEEEEEeCCh---------------------hhhhHHHHhhc-eEEecC---CCCHHHHHHHHHHHHHH-
Confidence 456677766531 24456799999 899999 99999998888776643
Q ss_pred HHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 415 KRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 415 ~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.|+ .++++++++|+..+- | |.|.+.+.+++
T Consensus 202 ------egi---~I~~eal~~La~~s~---G-dlr~al~eLeK 231 (620)
T PRK14954 202 ------EGI---QIDADALQLIARKAQ---G-SMRDAQSILDQ 231 (620)
T ss_pred ------cCC---CCCHHHHHHHHHHhC---C-CHHHHHHHHHH
Confidence 454 789999999998543 4 55766666553
No 96
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=7.9e-15 Score=163.16 Aligned_cols=187 Identities=20% Similarity=0.316 Sum_probs=137.5
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------------
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------------ 266 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------ 266 (550)
-+.|+||+++++.+.+++... + -|..+||+||+|+|||++|+++|+.+....
T Consensus 16 f~~viGq~~~~~~L~~~i~~~---~-------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~ 85 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATN---K-------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFN 85 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcC---C-------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHh
Confidence 357999999999999998865 1 237899999999999999999999987310
Q ss_pred -CCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEee
Q 036633 267 -DNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341 (550)
Q Consensus 267 -~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd 341 (550)
..+-+++.+|.+.......+. .+.+.+...| +.|++|||++.++.+.++.|+++|++. .
T Consensus 86 ~~~~~n~~~ld~~~~~~vd~Ir----~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep--p---------- 149 (614)
T PRK14971 86 EQRSYNIHELDAASNNSVDDIR----NLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP--P---------- 149 (614)
T ss_pred cCCCCceEEecccccCCHHHHH----HHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC--C----------
Confidence 012345566654322111221 2233334333 679999999999999999999999986 4
Q ss_pred cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS 421 (550)
Q Consensus 342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~ 421 (550)
.+++||++|+.. ..+.|.+.+|| .++.|. +++.+++...+...+.+ .
T Consensus 150 -~~tifIL~tt~~---------------------~kIl~tI~SRc-~iv~f~---~ls~~ei~~~L~~ia~~-------e 196 (614)
T PRK14971 150 -SYAIFILATTEK---------------------HKILPTILSRC-QIFDFN---RIQVADIVNHLQYVASK-------E 196 (614)
T ss_pred -CCeEEEEEeCCc---------------------hhchHHHHhhh-heeecC---CCCHHHHHHHHHHHHHH-------c
Confidence 567788877632 35667899999 799999 99999999888876643 5
Q ss_pred CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
|+ .++++++++|+..+- | +.|.+.+.+++
T Consensus 197 gi---~i~~~al~~La~~s~---g-dlr~al~~Lek 225 (614)
T PRK14971 197 GI---TAEPEALNVIAQKAD---G-GMRDALSIFDQ 225 (614)
T ss_pred CC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 55 789999999998543 4 55766666654
No 97
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.3e-14 Score=153.02 Aligned_cols=189 Identities=19% Similarity=0.247 Sum_probs=132.9
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC----CCCceeEEecCCC
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND----NDNHLIHFDMGNY 280 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~----~~~~li~id~s~~ 280 (550)
-+.++||+.++..+.+.+... .-|.++||+||||+|||++|+++++.++..+. ..-++..+++...
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~ 85 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENN----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAA 85 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcC----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccc
Confidence 356899999999988888755 13379999999999999999999999875210 0112223333221
Q ss_pred CchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChH
Q 036633 281 TELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDE 356 (550)
Q Consensus 281 ~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~ 356 (550)
.. ..+. -+..+.+.+... ++.||++||++.+++..++.|+..+++. . .++++|+++|..
T Consensus 86 ~~-~~~~-~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~--~-----------~~~~~Il~~~~~-- 148 (367)
T PRK14970 86 SN-NSVD-DIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP--P-----------AHAIFILATTEK-- 148 (367)
T ss_pred cC-CCHH-HHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC--C-----------CceEEEEEeCCc--
Confidence 10 0111 122333333333 3469999999999999999999999875 4 456777777632
Q ss_pred HHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHH
Q 036633 357 QVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI 436 (550)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L 436 (550)
..+.|.+.+|+ .++.|. |++.+++..++...+.+ .|+ .++++++++|
T Consensus 149 -------------------~kl~~~l~sr~-~~v~~~---~~~~~~l~~~l~~~~~~-------~g~---~i~~~al~~l 195 (367)
T PRK14970 149 -------------------HKIIPTILSRC-QIFDFK---RITIKDIKEHLAGIAVK-------EGI---KFEDDALHII 195 (367)
T ss_pred -------------------ccCCHHHHhcc-eeEecC---CccHHHHHHHHHHHHHH-------cCC---CCCHHHHHHH
Confidence 35667899999 789999 99999999888877743 555 7899999999
Q ss_pred HhcCcccCCCcccHHHHHHcc
Q 036633 437 ASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 437 ~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+..+- | |.|.+.+.+++
T Consensus 196 ~~~~~---g-dlr~~~~~lek 212 (367)
T PRK14970 196 AQKAD---G-ALRDALSIFDR 212 (367)
T ss_pred HHhCC---C-CHHHHHHHHHH
Confidence 98542 4 55766666664
No 98
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.4e-15 Score=160.36 Aligned_cols=189 Identities=22% Similarity=0.296 Sum_probs=139.1
Q ss_pred cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
.+.|=|+++.+..+-.++.+... .+.|+. .|.-+||+||||||||++|+++|..... +|+.+.+.+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~---ppkGVLlyGPPGC~KT~lAkalAne~~~------nFlsvkgpE 503 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGIS---PPKGVLLYGPPGCGKTLLAKALANEAGM------NFLSVKGPE 503 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCC---CCceEEEECCCCcchHHHHHHHhhhhcC------CeeeccCHH
Confidence 34566788888888888766532 244553 2378999999999999999999999877 999998776
Q ss_pred CCchhhhhhHHh-------HHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEee
Q 036633 280 YTELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFD 341 (550)
Q Consensus 280 ~~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd 341 (550)
+ .++++| .+-...|..+-+||||||||... ..|++.||.-||.. . .
T Consensus 504 L-----~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~--e---------~ 567 (693)
T KOG0730|consen 504 L-----FSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL--E---------A 567 (693)
T ss_pred H-----HHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccc--c---------c
Confidence 5 556666 22233344444999999998542 35788888888655 2 1
Q ss_pred cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 036633 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNN 419 (550)
Q Consensus 342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~ 419 (550)
-+|++||.+||.. ..++|+++. |+|.+|.+. +.+.+....|++..+.
T Consensus 568 ~k~V~ViAATNRp---------------------d~ID~ALlRPGRlD~iiyVp---lPD~~aR~~Ilk~~~k------- 616 (693)
T KOG0730|consen 568 LKNVLVIAATNRP---------------------DMIDPALLRPGRLDRIIYVP---LPDLEARLEILKQCAK------- 616 (693)
T ss_pred cCcEEEEeccCCh---------------------hhcCHHHcCCcccceeEeec---CccHHHHHHHHHHHHh-------
Confidence 2789999999985 467889996 999999999 8888889999888773
Q ss_pred cCCCccccCCHH-HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 420 DSKAVIVCPSTS-ALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 420 ~~~~~~l~~~~~-a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ ..++++ -++.|+...- |.+|.+|..+++.
T Consensus 617 --k---mp~~~~vdl~~La~~T~---g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 617 --K---MPFSEDVDLEELAQATE---GYSGAEIVAVCQE 647 (693)
T ss_pred --c---CCCCccccHHHHHHHhc---cCChHHHHHHHHH
Confidence 2 255665 3677776322 2245889999987
No 99
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.3e-14 Score=161.56 Aligned_cols=188 Identities=18% Similarity=0.250 Sum_probs=133.8
Q ss_pred hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC--C-------------
Q 036633 204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND--N------------- 268 (550)
Q Consensus 204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~--~------------- 268 (550)
--+.|+||++++..+..++... + .+..+||+||+|+|||++|+.+|+.++.... .
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~---~-------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEG---R-------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhC---C-------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 3457999999999998888765 1 2367899999999999999999999874110 0
Q ss_pred ----CCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEe
Q 036633 269 ----DNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340 (550)
Q Consensus 269 ----~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~v 340 (550)
.-.++.+|.+.......+. .+.+.+... .+.||+|||+++++.+.++.|++.+++. .
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir----~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep--p--------- 148 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAR----EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP--P--------- 148 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHH----HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC--C---------
Confidence 0123444432221111111 333333333 3579999999999999999999999987 4
Q ss_pred ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633 341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND 420 (550)
Q Consensus 341 d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~ 420 (550)
.+++||++++.- ..+.+.+.+|+ ..+.|. +++..++..++...+.+
T Consensus 149 --~~tv~Il~t~~~---------------------~kll~tI~SR~-~~i~f~---~l~~~el~~~L~~~a~~------- 194 (585)
T PRK14950 149 --PHAIFILATTEV---------------------HKVPATILSRC-QRFDFH---RHSVADMAAHLRKIAAA------- 194 (585)
T ss_pred --CCeEEEEEeCCh---------------------hhhhHHHHhcc-ceeeCC---CCCHHHHHHHHHHHHHH-------
Confidence 456777776531 23446688999 789999 99999998888776643
Q ss_pred CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.|+ .++++++.+|+..+. | |.|.+.+.+++
T Consensus 195 egl---~i~~eal~~La~~s~---G-dlr~al~~Lek 224 (585)
T PRK14950 195 EGI---NLEPGALEAIARAAT---G-SMRDAENLLQQ 224 (585)
T ss_pred cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 455 789999999998543 5 66877777764
No 100
>PRK04195 replication factor C large subunit; Provisional
Probab=99.61 E-value=1.1e-14 Score=158.92 Aligned_cols=183 Identities=19% Similarity=0.215 Sum_probs=135.0
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCC-CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~-p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
..++||+.++..+...+..+ ..| + +.++||+||||||||++|+++|+.+.. +++.+|.+.+....
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~---~~g-----~~~~~lLL~GppG~GKTtla~ala~el~~------~~ielnasd~r~~~ 79 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESW---LKG-----KPKKALLLYGPPGVGKTSLAHALANDYGW------EVIELNASDQRTAD 79 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHH---hcC-----CCCCeEEEECCCCCCHHHHHHHHHHHcCC------CEEEEcccccccHH
Confidence 34899999999999998876 322 3 379999999999999999999999866 89999999877655
Q ss_pred hhhhHHhHHHH--HHHhCCCCeEEeccccccCH----HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHH
Q 036633 285 SIKHFFDSLAA--LVKKRPYSVVLFDKIEKANS----SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQV 358 (550)
Q Consensus 285 ~~s~liG~lt~--al~~~p~~VlllDEIeka~~----~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~ 358 (550)
.+..+++.... .+...++.||+|||++.++. ..++.|+.++++. . +.||+++|...
T Consensus 80 ~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~-------------~~iIli~n~~~--- 141 (482)
T PRK04195 80 VIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--K-------------QPIILTANDPY--- 141 (482)
T ss_pred HHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--C-------------CCEEEeccCcc---
Confidence 55555542211 11112567999999999876 6788899998866 2 23677777531
Q ss_pred HHhhhhhhHhhHHHHhccCCCh-hhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHH
Q 036633 359 YEVMLTATYGRVNEVTGSLFKP-SLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIA 437 (550)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~f~p-~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~ 437 (550)
...+ .+.+|+ ..|.|. +++.+++..++...+.. .|+ .+++++++.|+
T Consensus 142 ------------------~~~~k~Lrsr~-~~I~f~---~~~~~~i~~~L~~i~~~-------egi---~i~~eaL~~Ia 189 (482)
T PRK04195 142 ------------------DPSLRELRNAC-LMIEFK---RLSTRSIVPVLKRICRK-------EGI---ECDDEALKEIA 189 (482)
T ss_pred ------------------ccchhhHhccc-eEEEec---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHH
Confidence 2233 677888 799999 99999999988887743 455 78999999999
Q ss_pred hcCcccCCCcccHHHHHHc
Q 036633 438 SNAARKYGQNGEGLKRWMD 456 (550)
Q Consensus 438 ~~~~~~~GaN~R~L~~~i~ 456 (550)
..+. | +.|.+-+.++
T Consensus 190 ~~s~---G-DlR~ain~Lq 204 (482)
T PRK04195 190 ERSG---G-DLRSAINDLQ 204 (482)
T ss_pred HHcC---C-CHHHHHHHHH
Confidence 8543 4 4454444443
No 101
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.61 E-value=4.2e-14 Score=145.86 Aligned_cols=184 Identities=17% Similarity=0.299 Sum_probs=132.2
Q ss_pred cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh
Q 036633 207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI 286 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~ 286 (550)
.++||++++..+..++... .+.+++|+||||||||++|+.+++.+++.+ ...+++.++++........
T Consensus 18 ~~~g~~~~~~~l~~~i~~~-----------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~ 85 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEK-----------NMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDVI 85 (319)
T ss_pred HhcCcHHHHHHHHHHHhCC-----------CCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHH
Confidence 4789999999988888654 234689999999999999999999987621 1234566665543322111
Q ss_pred hhHHhHHHHHHHhC-----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633 287 KHFFDSLAALVKKR-----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV 361 (550)
Q Consensus 287 s~liG~lt~al~~~-----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~ 361 (550)
.. .+.+..+.. ++.||+|||++.++++.++.|+++++.. . .++.+|+++|..
T Consensus 86 ~~---~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~--~-----------~~~~lIl~~~~~------- 142 (319)
T PRK00440 86 RN---KIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY--S-----------QNTRFILSCNYS------- 142 (319)
T ss_pred HH---HHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC--C-----------CCCeEEEEeCCc-------
Confidence 11 222233333 3459999999999999999999999876 4 446688888753
Q ss_pred hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc
Q 036633 362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA 441 (550)
Q Consensus 362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~ 441 (550)
..+.+.+.+|+ .++.|. |++.+++..++...+.+ .|+ .++++++++|+..+.
T Consensus 143 --------------~~l~~~l~sr~-~~~~~~---~l~~~ei~~~l~~~~~~-------~~~---~i~~~al~~l~~~~~ 194 (319)
T PRK00440 143 --------------SKIIDPIQSRC-AVFRFS---PLKKEAVAERLRYIAEN-------EGI---EITDDALEAIYYVSE 194 (319)
T ss_pred --------------cccchhHHHHh-heeeeC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHcC
Confidence 24456688999 689999 99999999888877753 455 789999999998543
Q ss_pred ccCCCcccHHHHHHcc
Q 036633 442 RKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 442 ~~~GaN~R~L~~~i~~ 457 (550)
| |.|.+-+.++.
T Consensus 195 ---g-d~r~~~~~l~~ 206 (319)
T PRK00440 195 ---G-DMRKAINALQA 206 (319)
T ss_pred ---C-CHHHHHHHHHH
Confidence 5 66766666653
No 102
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.61 E-value=1.3e-14 Score=142.30 Aligned_cols=180 Identities=13% Similarity=0.168 Sum_probs=127.4
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF 289 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l 289 (550)
+++.++..+...+... .+.+++|+||+|||||++|+++++.+.. ...+++.++|+.+.... ..+
T Consensus 21 ~~~~~~~~l~~~~~~~-----------~~~~lll~G~~G~GKT~la~~~~~~~~~---~~~~~~~i~~~~~~~~~--~~~ 84 (226)
T TIGR03420 21 GNAELLAALRQLAAGK-----------GDRFLYLWGESGSGKSHLLQAACAAAEE---RGKSAIYLPLAELAQAD--PEV 84 (226)
T ss_pred CcHHHHHHHHHHHhcC-----------CCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEeHHHHHHhH--HHH
Confidence 4566666665554322 3479999999999999999999999876 45588999998875322 111
Q ss_pred HhHHHHHHHhCCCCeEEeccccccCHH--HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhH
Q 036633 290 FDSLAALVKKRPYSVVLFDKIEKANSS--ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATY 367 (550)
Q Consensus 290 iG~lt~al~~~p~~VlllDEIeka~~~--v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~ 367 (550)
.+.+. ..++|+|||++.++.. .+..|..+++.. . + .+..+|+|||......
T Consensus 85 ----~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~--~---~-------~~~~iIits~~~~~~~--------- 137 (226)
T TIGR03420 85 ----LEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRV--R---E-------AGGRLLIAGRAAPAQL--------- 137 (226)
T ss_pred ----Hhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHH--H---H-------cCCeEEEECCCChHHC---------
Confidence 12222 2369999999999874 488888888754 2 0 1124778887643211
Q ss_pred hhHHHHhccCCChhhhhhcc--ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCC
Q 036633 368 GRVNEVTGSLFKPSLLKLLD--KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYG 445 (550)
Q Consensus 368 ~~~~~~l~~~f~p~ll~Rid--~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~G 445 (550)
..+.+.+.+|+. ..|.+. |++.+++..++...+.. .++ .++++++++|+.. |+ |
T Consensus 138 --------~~~~~~L~~r~~~~~~i~l~---~l~~~e~~~~l~~~~~~-------~~~---~~~~~~l~~L~~~-~~--g 193 (226)
T TIGR03420 138 --------PLRLPDLRTRLAWGLVFQLP---PLSDEEKIAALQSRAAR-------RGL---QLPDEVADYLLRH-GS--R 193 (226)
T ss_pred --------CcccHHHHHHHhcCeeEecC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHh-cc--C
Confidence 223378888984 467788 99999998888765432 344 7899999999984 54 6
Q ss_pred CcccHHHHHHcc
Q 036633 446 QNGEGLKRWMDQ 457 (550)
Q Consensus 446 aN~R~L~~~i~~ 457 (550)
|.|.|+++++.
T Consensus 194 -n~r~L~~~l~~ 204 (226)
T TIGR03420 194 -DMGSLMALLDA 204 (226)
T ss_pred -CHHHHHHHHHH
Confidence 99999999997
No 103
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=2.4e-14 Score=151.30 Aligned_cols=159 Identities=14% Similarity=0.218 Sum_probs=109.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcC--CCeeEEEeccCCCcHHHHHHHHHHHhccCCC----------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRR--QLGLFLFAGPNCSGKAELAKAIANELYDNND---------------- 267 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~--~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~---------------- 267 (550)
+.|+||+++++.+.+++... +.+..... .|..+||+||+|+|||++|+.+|+.+.....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~---~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAA---RADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA 81 (394)
T ss_pred hhccChHHHHHHHHHHHHhc---cccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Confidence 46899999999999999876 43322222 2378999999999999999999999876210
Q ss_pred -CCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 268 -NDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 268 -~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
.+..+..+...... ..+..+ -.+.+.+... ++.|++|||+|++++..+|.||+.||+. .
T Consensus 82 ~~hpD~~~i~~~~~~--i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep--~----------- 145 (394)
T PRK07940 82 GTHPDVRVVAPEGLS--IGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP--P----------- 145 (394)
T ss_pred CCCCCEEEecccccc--CCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC--C-----------
Confidence 00011112111000 001110 0333444333 3569999999999999999999999987 5
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE 408 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~ 408 (550)
.+++||++|+.. ..+.|.+++|| ..+.|. |++.+++..++.
T Consensus 146 ~~~~fIL~a~~~---------------------~~llpTIrSRc-~~i~f~---~~~~~~i~~~L~ 186 (394)
T PRK07940 146 PRTVWLLCAPSP---------------------EDVLPTIRSRC-RHVALR---TPSVEAVAEVLV 186 (394)
T ss_pred CCCeEEEEECCh---------------------HHChHHHHhhC-eEEECC---CCCHHHHHHHHH
Confidence 456666666542 35568899999 899999 999998776665
No 104
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3e-14 Score=158.59 Aligned_cols=186 Identities=19% Similarity=0.254 Sum_probs=130.6
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------ 267 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------ 267 (550)
..++||++++..+..++... + -+..+||+||+|+|||++|+++|+.++....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~---r-------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN---R-------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcC---C-------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHh
Confidence 57899999999998888865 2 2268999999999999999999999976210
Q ss_pred --CCCceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEee
Q 036633 268 --NDNHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341 (550)
Q Consensus 268 --~~~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd 341 (550)
..-.++.++.+.-.....+. .+.+.+.. .++.||+|||+|+++.+.++.||+.||+. .
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IR----eii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP--p---------- 149 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIR----ELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP--P---------- 149 (620)
T ss_pred cCCCccEEEEeccccCCHHHHH----HHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC--C----------
Confidence 00123333322100001111 23333333 34679999999999999999999999987 4
Q ss_pred cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS 421 (550)
Q Consensus 342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~ 421 (550)
.+++||++|+.. ..+.|.+.+|| ..+.|. +++.+++...+...+.+ .
T Consensus 150 -~~tvfIL~t~~~---------------------~~llpTIrSRc-~~~~f~---~l~~~ei~~~L~~ia~k-------e 196 (620)
T PRK14948 150 -PRVVFVLATTDP---------------------QRVLPTIISRC-QRFDFR---RIPLEAMVQHLSEIAEK-------E 196 (620)
T ss_pred -cCeEEEEEeCCh---------------------hhhhHHHHhhe-eEEEec---CCCHHHHHHHHHHHHHH-------h
Confidence 557788877632 23456799999 799999 99998888776665532 3
Q ss_pred CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
|+ .++++++..|+..+. | +.|.+.+.+++
T Consensus 197 gi---~is~~al~~La~~s~---G-~lr~A~~lLek 225 (620)
T PRK14948 197 SI---EIEPEALTLVAQRSQ---G-GLRDAESLLDQ 225 (620)
T ss_pred CC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 44 689999999988643 4 45766666653
No 105
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.59 E-value=1.7e-14 Score=153.16 Aligned_cols=198 Identities=20% Similarity=0.256 Sum_probs=133.0
Q ss_pred cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
...|.|.+..++.+...+...+. ...|+. .|..+||+||||||||++|+++|..+.. +|+.+++++
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~---~p~gvLL~GppGtGKT~lAkaia~~~~~------~~i~v~~~~ 200 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIE---PPKGVLLYGPPGTGKTLLAKAVAHETNA------TFIRVVGSE 200 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC---CCCceEEECCCCCChHHHHHHHHHHhCC------CEEEeehHH
Confidence 35688999999999988754311 012322 3378999999999999999999999876 899999987
Q ss_pred CCchhh--hhhHHhHHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633 280 YTELES--IKHFFDSLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKTDFNRKATRGIAAFDLTNTL 346 (550)
Q Consensus 280 ~~~~~~--~s~liG~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i 346 (550)
+..... ....+..+.+..+.+..+||||||||.+ ++.++..|++++..- ..+. +..+++
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l--d~~~------~~~~v~ 272 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEM--DGFD------PRGNVK 272 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhc--cccC------CCCCEE
Confidence 642210 1112222233333444489999999986 467788888877532 1011 124677
Q ss_pred EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633 347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV 424 (550)
Q Consensus 347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~ 424 (550)
||+|||.. ..++|+++ +|+|..|.|. +++.++...|+..++.. ..+
T Consensus 273 VI~aTn~~---------------------~~ld~allRpgRfd~~I~v~---~P~~~~R~~Il~~~~~~-------~~~- 320 (389)
T PRK03992 273 IIAATNRI---------------------DILDPAILRPGRFDRIIEVP---LPDEEGRLEILKIHTRK-------MNL- 320 (389)
T ss_pred EEEecCCh---------------------hhCCHHHcCCccCceEEEEC---CCCHHHHHHHHHHHhcc-------CCC-
Confidence 99999964 35677777 4999999999 89999999999876632 222
Q ss_pred cccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.-.++ ...|+...- |.++++|+.++..
T Consensus 321 ~~~~~---~~~la~~t~---g~sgadl~~l~~e 347 (389)
T PRK03992 321 ADDVD---LEELAELTE---GASGADLKAICTE 347 (389)
T ss_pred CCcCC---HHHHHHHcC---CCCHHHHHHHHHH
Confidence 11122 445555332 4466899988886
No 106
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.59 E-value=4e-14 Score=146.53 Aligned_cols=225 Identities=13% Similarity=0.150 Sum_probs=145.7
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCCCcee-----------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DNDNHLI----------- 273 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~~li----------- 273 (550)
..|+||++++..+..++... +.+.++|.||+|||||++|+++++.+...+ ....||.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p-----------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~ 85 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDP-----------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSD 85 (350)
T ss_pred HHHhChHHHHHHHHHhccCC-----------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhch
Confidence 45899999998887777654 447788999999999999999999986521 1111222
Q ss_pred -----------------EEecCCCCchhhhhhHHh--HHHHHHH------------hCCCCeEEeccccccCHHHHHHHH
Q 036633 274 -----------------HFDMGNYTELESIKHFFD--SLAALVK------------KRPYSVVLFDKIEKANSSILNLLL 322 (550)
Q Consensus 274 -----------------~id~s~~~~~~~~s~liG--~lt~al~------------~~p~~VlllDEIeka~~~v~~~Ll 322 (550)
.+.|..+....+.++++| .+..++. +...++||+|||+.+++.+|+.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL 165 (350)
T CHL00081 86 EVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL 165 (350)
T ss_pred hhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence 122222233335667788 3333332 223589999999999999999999
Q ss_pred HhhhhccccccccCCeEeec-CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC-H
Q 036633 323 KILKTDFNRKATRGIAAFDL-TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL-D 400 (550)
Q Consensus 323 ~~ld~g~~~~l~d~g~~vd~-~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~-~ 400 (550)
+++++|++. +...|..... .+.++|+|.|.. ...|++++++||.-.|.+. ..+ .
T Consensus 166 eam~e~~~~-ier~G~s~~~p~rfiviaT~np~--------------------eg~l~~~LldRf~l~i~l~---~~~~~ 221 (350)
T CHL00081 166 DSAASGWNT-VEREGISIRHPARFVLVGSGNPE--------------------EGELRPQLLDRFGMHAEIR---TVKDP 221 (350)
T ss_pred HHHHhCCeE-EeeCCeeeecCCCEEEEeccCcc--------------------cCCCCHHHHHHhCceeecC---CCCCh
Confidence 999998444 4322332222 356677777753 2579999999998888888 665 4
Q ss_pred HHHHHHHHHHHHHH-----------------HHHhc--cCCCccccCCHHHHHHHHhcCc-cc-CCCcccHHHHHHcchh
Q 036633 401 TTRLLLREWACEET-----------------KRRNN--DSKAVIVCPSTSALVHIASNAA-RK-YGQNGEGLKRWMDQRP 459 (550)
Q Consensus 401 e~i~~I~~~~l~~~-----------------~~~l~--~~~~~~l~~~~~a~~~L~~~~~-~~-~GaN~R~L~~~i~~~~ 459 (550)
+.-.+|+.+....- .+++. +.-+-.+.+++++++|+++.+. .+ .|- |.---+++- .
T Consensus 222 ~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~--Ra~i~l~ra-A 298 (350)
T CHL00081 222 ELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGL--RGDIVTNRA-A 298 (350)
T ss_pred HHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCC--hHHHHHHHH-H
Confidence 66667766543210 11111 0111146899999999998665 22 244 766666663 4
Q ss_pred hHHHHHhhh
Q 036633 460 SADHVIDKF 468 (550)
Q Consensus 460 la~~~l~~~ 468 (550)
-|.+.+.|.
T Consensus 299 rA~Aal~GR 307 (350)
T CHL00081 299 KALAAFEGR 307 (350)
T ss_pred HHHHHHcCC
Confidence 455556553
No 107
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.58 E-value=4.6e-14 Score=142.08 Aligned_cols=158 Identities=16% Similarity=0.116 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh
Q 036633 212 NDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291 (550)
Q Consensus 212 ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG 291 (550)
..+++.+.+.+.... . ...+++|.||||||||++|+++|+.+.. ++++++|+.-... +.++|
T Consensus 4 t~~~~~l~~~~l~~l--~-------~g~~vLL~G~~GtGKT~lA~~la~~lg~------~~~~i~~~~~~~~---~dllg 65 (262)
T TIGR02640 4 TDAVKRVTSRALRYL--K-------SGYPVHLRGPAGTGKTTLAMHVARKRDR------PVMLINGDAELTT---SDLVG 65 (262)
T ss_pred CHHHHHHHHHHHHHH--h-------cCCeEEEEcCCCCCHHHHHHHHHHHhCC------CEEEEeCCccCCH---HHHhh
Confidence 345555555555441 1 1147899999999999999999998766 9999999864322 22333
Q ss_pred --------------------------------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCC--
Q 036633 292 --------------------------------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGI-- 337 (550)
Q Consensus 292 --------------------------------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g-- 337 (550)
.+..+.+ .+++|+||||+++++++++.|++++++|++. +.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~-i~~~~~~ 142 (262)
T TIGR02640 66 SYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLE-LPGKRGT 142 (262)
T ss_pred hhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEE-ccCCCCC
Confidence 2233332 2469999999999999999999999999433 33321
Q ss_pred -eEee-cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHH
Q 036633 338 -AAFD-LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWA 410 (550)
Q Consensus 338 -~~vd-~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~ 410 (550)
..+. -.+..||+|+|...... ...++++|++|| ..+.+. .++.++..+|+...
T Consensus 143 ~~~i~~~~~frvIaTsN~~~~~g----------------~~~l~~aL~~R~-~~i~i~---~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 143 SRYVDVHPEFRVIFTSNPVEYAG----------------VHETQDALLDRL-ITIFMD---YPDIDTETAILRAK 197 (262)
T ss_pred CceEecCCCCEEEEeeCCccccc----------------eecccHHHHhhc-EEEECC---CCCHHHHHHHHHHh
Confidence 2221 13455999999742111 123578899999 677777 66888888887754
No 108
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.58 E-value=8.8e-14 Score=136.94 Aligned_cols=158 Identities=13% Similarity=0.120 Sum_probs=116.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL 318 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~ 318 (550)
.+++|+||+|||||++|+++++.+.. ...+++.+++....+.. . ......+|+|||++.+++..+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~---~~~~~~~i~~~~~~~~~----------~--~~~~~~~liiDdi~~l~~~~~ 107 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASY---GGRNARYLDAASPLLAF----------D--FDPEAELYAVDDVERLDDAQQ 107 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEehHHhHHHH----------h--hcccCCEEEEeChhhcCchHH
Confidence 68999999999999999999999876 56688899987653210 0 112347999999999999999
Q ss_pred HHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--ceeEecCCC
Q 036633 319 NLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLVVIDLAV 396 (550)
Q Consensus 319 ~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii~f~~~~ 396 (550)
..|+.+++.. . . -...++|+|++.... ...|.+++.+|+. ..|.+.
T Consensus 108 ~~L~~~~~~~--~---~------~~~~~vl~~~~~~~~------------------~~~l~~~L~sr~~~~~~i~l~--- 155 (227)
T PRK08903 108 IALFNLFNRV--R---A------HGQGALLVAGPAAPL------------------ALPLREDLRTRLGWGLVYELK--- 155 (227)
T ss_pred HHHHHHHHHH--H---H------cCCcEEEEeCCCCHH------------------hCCCCHHHHHHHhcCeEEEec---
Confidence 9999999654 2 0 022346677665321 1246788999984 477788
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 397 PLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 397 pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
||+.++...++..... ..++ .++++++++|+. .|+ | |.|.|.++++.
T Consensus 156 pl~~~~~~~~l~~~~~-------~~~v---~l~~~al~~L~~-~~~--g-n~~~l~~~l~~ 202 (227)
T PRK08903 156 PLSDADKIAALKAAAA-------ERGL---QLADEVPDYLLT-HFR--R-DMPSLMALLDA 202 (227)
T ss_pred CCCHHHHHHHHHHHHH-------HcCC---CCCHHHHHHHHH-hcc--C-CHHHHHHHHHH
Confidence 9998877666654332 2444 889999999999 554 6 99999999996
No 109
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.58 E-value=2.6e-14 Score=150.66 Aligned_cols=201 Identities=21% Similarity=0.245 Sum_probs=129.6
Q ss_pred hhhcCcccCcHHHHHHHHHHHhcchhh-----hcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 202 GRLKKRVFGQNDAIDVIFEALTKPKAA-----KKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 202 ~~L~~~viGQ~~ai~~i~~~l~~~~~~-----~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
......|.|.+..++.+..++...+.. ..|+ ..|..+||+||||||||++|+++|..+.. +|+++.
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~---~~p~gvLL~GppGtGKT~lakaia~~l~~------~~~~v~ 188 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGI---EPPKGVLLYGPPGTGKTLLAKAVAHETNA------TFIRVV 188 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHHHHHHHhCCC------CEEecc
Confidence 334467999999999999988643110 1122 12467999999999999999999999877 788887
Q ss_pred cCCCCchh--hhhhHHhHHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633 277 MGNYTELE--SIKHFFDSLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 277 ~s~~~~~~--~~s~liG~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
++++.... .....+..+....+....+||||||+|.+ ++.++..|.+++..- ..+. ...
T Consensus 189 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~l--d~~~------~~~ 260 (364)
T TIGR01242 189 GSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEL--DGFD------PRG 260 (364)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHh--hCCC------CCC
Confidence 66543211 00111112222333334479999999986 356677777776432 1011 124
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS 421 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~ 421 (550)
++.||+|||.. ..++|+++ +|+|.+|.|. +++.++...|+..++.. .
T Consensus 261 ~v~vI~ttn~~---------------------~~ld~al~r~grfd~~i~v~---~P~~~~r~~Il~~~~~~-------~ 309 (364)
T TIGR01242 261 NVKVIAATNRP---------------------DILDPALLRPGRFDRIIEVP---LPDFEGRLEILKIHTRK-------M 309 (364)
T ss_pred CEEEEEecCCh---------------------hhCChhhcCcccCceEEEeC---CcCHHHHHHHHHHHHhc-------C
Confidence 67799999964 24566776 5999999999 89999999998766532 2
Q ss_pred CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.. .-.++ .+.|+..+. |.+|++|+.++..
T Consensus 310 ~l-~~~~~---~~~la~~t~---g~sg~dl~~l~~~ 338 (364)
T TIGR01242 310 KL-AEDVD---LEAIAKMTE---GASGADLKAICTE 338 (364)
T ss_pred CC-CccCC---HHHHHHHcC---CCCHHHHHHHHHH
Confidence 11 11122 345555332 4466899888875
No 110
>CHL00176 ftsH cell division protein; Validated
Probab=99.57 E-value=3e-14 Score=158.74 Aligned_cols=196 Identities=19% Similarity=0.261 Sum_probs=126.2
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhc--CCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKK--GLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL 283 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~--gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~ 283 (550)
+.|+|.+++++.+...+........ .+ ....|..+||+||||||||++|+++|..+.. ||+.++++++.+.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~-g~~~p~gVLL~GPpGTGKT~LAralA~e~~~------p~i~is~s~f~~~ 255 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAV-GAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV------PFFSISGSEFVEM 255 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHhCC------CeeeccHHHHHHH
Confidence 4588999999877666533200011 00 1123467999999999999999999998866 9999999887532
Q ss_pred hh---hhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhh--hccccccccCCeEeecCCeEE
Q 036633 284 ES---IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILK--TDFNRKATRGIAAFDLTNTLI 347 (550)
Q Consensus 284 ~~---~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld--~g~~~~l~d~g~~vd~~~~ii 347 (550)
.. .+.+...|..+....| +||||||||.+. +.....|.+++. +| +.. -.++++
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P-~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg----~~~------~~~ViV 324 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSP-CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG----FKG------NKGVIV 324 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCC-cEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc----ccC------CCCeeE
Confidence 21 1111113333333344 899999998763 333344444442 12 111 145778
Q ss_pred EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633 348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI 425 (550)
Q Consensus 348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~ 425 (550)
|+|||.. ..++|+++ +|+|..|.|. +++.++...|++.++.. ...
T Consensus 325 IaaTN~~---------------------~~LD~ALlRpGRFd~~I~v~---lPd~~~R~~IL~~~l~~-------~~~-- 371 (638)
T CHL00176 325 IAATNRV---------------------DILDAALLRPGRFDRQITVS---LPDREGRLDILKVHARN-------KKL-- 371 (638)
T ss_pred EEecCch---------------------HhhhhhhhccccCceEEEEC---CCCHHHHHHHHHHHHhh-------ccc--
Confidence 9999863 23456676 5999999999 88999999999988854 111
Q ss_pred ccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 426 VCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 426 l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++..+..|+... + |.|+++|+++++.
T Consensus 372 --~~d~~l~~lA~~t-~--G~sgaDL~~lvne 398 (638)
T CHL00176 372 --SPDVSLELIARRT-P--GFSGADLANLLNE 398 (638)
T ss_pred --chhHHHHHHHhcC-C--CCCHHHHHHHHHH
Confidence 2334466666643 2 4466888888875
No 111
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.57 E-value=1.2e-14 Score=156.16 Aligned_cols=189 Identities=20% Similarity=0.233 Sum_probs=141.3
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC-CCCCceeE-EecCCCCc
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN-DNDNHLIH-FDMGNYTE 282 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~~li~-id~s~~~~ 282 (550)
..|+||++.+..+.+++... +- ..+||+||-|||||++||.+|+.+...+ ....|+.. ..|-+...
T Consensus 16 ~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE 84 (515)
T ss_pred HHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc
Confidence 56799999999999999977 33 7899999999999999999999998732 11222211 11111211
Q ss_pred hh--------hhh-hHHh---HHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633 283 LE--------SIK-HFFD---SLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTL 346 (550)
Q Consensus 283 ~~--------~~s-~liG---~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i 346 (550)
.. ..| ..+. .+.+.+...| |.|.+|||+|.++...+|.||+.+|+. - .+++
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP--P-----------~hV~ 151 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP--P-----------SHVK 151 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC--c-----------cCeE
Confidence 10 001 0111 5566665555 579999999999999999999999988 5 7788
Q ss_pred EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633 347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV 426 (550)
Q Consensus 347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l 426 (550)
||++|.-. ...++.+++|| +.+.|. .++.++|..-+...+.+ .++
T Consensus 152 FIlATTe~---------------------~Kip~TIlSRc-q~f~fk---ri~~~~I~~~L~~i~~~-------E~I--- 196 (515)
T COG2812 152 FILATTEP---------------------QKIPNTILSRC-QRFDFK---RLDLEEIAKHLAAILDK-------EGI--- 196 (515)
T ss_pred EEEecCCc---------------------CcCchhhhhcc-cccccc---CCCHHHHHHHHHHHHHh-------cCC---
Confidence 88776642 57788999999 899999 99999999888887754 555
Q ss_pred cCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 427 CPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 427 ~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++++++.+|+..+- | +.|+.-..+++
T Consensus 197 ~~e~~aL~~ia~~a~---G-s~RDalslLDq 223 (515)
T COG2812 197 NIEEDALSLIARAAE---G-SLRDALSLLDQ 223 (515)
T ss_pred ccCHHHHHHHHHHcC---C-ChhhHHHHHHH
Confidence 899999999998643 4 44877777776
No 112
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=9.9e-14 Score=147.37 Aligned_cols=190 Identities=21% Similarity=0.283 Sum_probs=133.0
Q ss_pred cccCcHHHHHHHHHHHhcch-----hhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 207 RVFGQNDAIDVIFEALTKPK-----AAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~-----~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
.|=|+++.-.++..++.+.. ..+.|+. .|.-+||+||||||||.||+++|+.... +|+.+-..++
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLlAKAVANEag~------NFisVKGPEL- 581 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLLAKAVANEAGA------NFISVKGPEL- 581 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHHHHHHhhhccC------ceEeecCHHH-
Confidence 35567777777766665430 0244553 3578999999999999999999999877 8999887665
Q ss_pred chhhhhhHHh-------HHHHHHHhCCCCeEEeccccccCH-----------HHHHHHHHhhhhccccccccCCeEeecC
Q 036633 282 ELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKANS-----------SILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 282 ~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka~~-----------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
.++.+| ++-...|.+.-|||||||||.+-| .+.|.||.-||.. . +-+
T Consensus 582 ----lNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl--~---------~R~ 646 (802)
T KOG0733|consen 582 ----LNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL--E---------ERR 646 (802)
T ss_pred ----HHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc--c---------ccc
Confidence 566677 222222334449999999997654 5899999888766 3 226
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS 421 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~ 421 (550)
++.||.+||.+ ...+|+++ +|+|.+.... +.+.++...|++..... .
T Consensus 647 gV~viaATNRP---------------------DiIDpAiLRPGRlDk~LyV~---lPn~~eR~~ILK~~tkn-------~ 695 (802)
T KOG0733|consen 647 GVYVIAATNRP---------------------DIIDPAILRPGRLDKLLYVG---LPNAEERVAILKTITKN-------T 695 (802)
T ss_pred ceEEEeecCCC---------------------cccchhhcCCCccCceeeec---CCCHHHHHHHHHHHhcc-------C
Confidence 77889999986 46788888 8999888888 77888888888876632 2
Q ss_pred CCccccCCHHH-HHHHHhcCc-ccCCCcccHHHHHHcc
Q 036633 422 KAVIVCPSTSA-LVHIASNAA-RKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 422 ~~~~l~~~~~a-~~~L~~~~~-~~~GaN~R~L~~~i~~ 457 (550)
+ .-+++++ ++.|+...- ..| .|-+|..+++.
T Consensus 696 k---~pl~~dVdl~eia~~~~c~gf--tGADLaaLvre 728 (802)
T KOG0733|consen 696 K---PPLSSDVDLDEIARNTKCEGF--TGADLAALVRE 728 (802)
T ss_pred C---CCCCcccCHHHHhhcccccCC--chhhHHHHHHH
Confidence 2 2344444 566665322 222 23678888887
No 113
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.55 E-value=4.2e-14 Score=161.81 Aligned_cols=194 Identities=20% Similarity=0.280 Sum_probs=132.8
Q ss_pred cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
-..|.|++.+++.+.+.+...+. .+.|+. .|..+||+||||||||++|+++|..+.. +|+.+++++
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~---~~~giLL~GppGtGKT~lakalA~e~~~------~fi~v~~~~ 522 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIR---PPKGVLLFGPPGTGKTLLAKAVATESGA------NFIAVRGPE 522 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCC---CCceEEEECCCCCCHHHHHHHHHHhcCC------CEEEEehHH
Confidence 35689999999999888865311 012322 2367999999999999999999999876 999999887
Q ss_pred CCchh--hhhhHHhHHHHHHHhCCCCeEEeccccccCH------------HHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633 280 YTELE--SIKHFFDSLAALVKKRPYSVVLFDKIEKANS------------SILNLLLKILKTDFNRKATRGIAAFDLTNT 345 (550)
Q Consensus 280 ~~~~~--~~s~liG~lt~al~~~p~~VlllDEIeka~~------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ 345 (550)
+.... .....+..+....+....+||||||||.+.+ .+.+.||..++.- . ..+++
T Consensus 523 l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~--~---------~~~~v 591 (733)
T TIGR01243 523 ILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGI--Q---------ELSNV 591 (733)
T ss_pred HhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcc--c---------CCCCE
Confidence 63221 0111222333444555559999999987632 3566677777532 1 12578
Q ss_pred EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633 346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA 423 (550)
Q Consensus 346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~ 423 (550)
+||+|||.. ..++|+++ +|||.+|.|. +++.++...|+...+. +.
T Consensus 592 ~vI~aTn~~---------------------~~ld~allRpgRfd~~i~v~---~Pd~~~R~~i~~~~~~---------~~ 638 (733)
T TIGR01243 592 VVIAATNRP---------------------DILDPALLRPGRFDRLILVP---PPDEEARKEIFKIHTR---------SM 638 (733)
T ss_pred EEEEeCCCh---------------------hhCCHhhcCCCccceEEEeC---CcCHHHHHHHHHHHhc---------CC
Confidence 899999974 35678888 5999999999 8899999999876552 22
Q ss_pred ccccCCHH-HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 424 VIVCPSTS-ALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 424 ~~l~~~~~-a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++++ -++.|+..+- |.+|.+|..+++.
T Consensus 639 ---~~~~~~~l~~la~~t~---g~sgadi~~~~~~ 667 (733)
T TIGR01243 639 ---PLAEDVDLEELAEMTE---GYTGADIEAVCRE 667 (733)
T ss_pred ---CCCccCCHHHHHHHcC---CCCHHHHHHHHHH
Confidence 22222 2566666432 3355889988876
No 114
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.55 E-value=9.4e-14 Score=147.13 Aligned_cols=192 Identities=18% Similarity=0.261 Sum_probs=128.0
Q ss_pred CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
..|.|.+..++.+.+++...+. ...|+. .|..+||+||||||||++|+++|..+.. +|+++.++++
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~---~pkgvLL~GppGTGKT~LAkalA~~l~~------~fi~i~~s~l 215 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGID---PPRGVLLYGPPGTGKTMLAKAVAHHTTA------TFIRVVGSEF 215 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC---CCceEEEECCCCCCHHHHHHHHHHhcCC------CEEEEehHHH
Confidence 4689999999999888864311 122332 3478999999999999999999999876 8999987665
Q ss_pred CchhhhhhHHh-------HHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 281 TELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 281 ~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
. +..+| .+....+.+..+||||||||.+ +..++..+.+++..- ..+.. .
T Consensus 216 ~-----~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l--d~~~~------~ 282 (398)
T PTZ00454 216 V-----QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM--DGFDQ------T 282 (398)
T ss_pred H-----HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh--hccCC------C
Confidence 3 22333 2222233333489999999865 245666666666421 10110 1
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND 420 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~ 420 (550)
.+++||+|||.. ..++|+++. |+|..|.|. +++.++...|+...+.+
T Consensus 283 ~~v~VI~aTN~~---------------------d~LDpAllR~GRfd~~I~~~---~P~~~~R~~Il~~~~~~------- 331 (398)
T PTZ00454 283 TNVKVIMATNRA---------------------DTLDPALLRPGRLDRKIEFP---LPDRRQKRLIFQTITSK------- 331 (398)
T ss_pred CCEEEEEecCCc---------------------hhCCHHHcCCCcccEEEEeC---CcCHHHHHHHHHHHHhc-------
Confidence 357789999963 467788874 999999999 88999998888876642
Q ss_pred CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++ .-.++ ...++.... |.++.+|+.+++.
T Consensus 332 ~~l-~~dvd---~~~la~~t~---g~sgaDI~~l~~e 361 (398)
T PTZ00454 332 MNL-SEEVD---LEDFVSRPE---KISAADIAAICQE 361 (398)
T ss_pred CCC-CcccC---HHHHHHHcC---CCCHHHHHHHHHH
Confidence 222 11222 344454322 4466899998886
No 115
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.55 E-value=5e-14 Score=154.34 Aligned_cols=162 Identities=24% Similarity=0.308 Sum_probs=109.6
Q ss_pred CcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
+.|+|+++++..+...+..... ...|. ..|..+||+||||||||++|+++|..+.. +|+.++++++.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~---~~~~giLL~GppGtGKT~la~alA~~~~~------~~~~i~~~~~~ 125 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGA---KIPKGVLLVGPPGTGKTLLAKAVAGEAGV------PFFSISGSDFV 125 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCC---CCCCcEEEECCCCCCHHHHHHHHHHHcCC------CeeeccHHHHH
Confidence 4588999998877765542200 01122 23367999999999999999999998876 89999988764
Q ss_pred chh---hhhhHHhHHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEeecCC
Q 036633 282 ELE---SIKHFFDSLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFDLTN 344 (550)
Q Consensus 282 ~~~---~~s~liG~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~ 344 (550)
+.. ....+...|..+....| +||||||||.+.+ .+++.||..++.- .. -.+
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p-~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~-----~~------~~~ 193 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF-----GT------NTG 193 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCC-CEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc-----cC------CCC
Confidence 321 11111113333333444 8999999987643 3445555555422 11 135
Q ss_pred eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633 345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACE 412 (550)
Q Consensus 345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~ 412 (550)
++||+|||.. ..++|+++. |+|..|.|. +++.++..+|+..++.
T Consensus 194 v~vI~aTn~~---------------------~~ld~al~r~gRfd~~i~i~---~Pd~~~R~~il~~~l~ 239 (495)
T TIGR01241 194 VIVIAATNRP---------------------DVLDPALLRPGRFDRQVVVD---LPDIKGREEILKVHAK 239 (495)
T ss_pred eEEEEecCCh---------------------hhcCHHHhcCCcceEEEEcC---CCCHHHHHHHHHHHHh
Confidence 7789999974 356777874 999999999 8899999999988774
No 116
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.54 E-value=1.9e-13 Score=141.51 Aligned_cols=224 Identities=14% Similarity=0.205 Sum_probs=140.0
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhcc----------CCCCCCceeEE
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYD----------NNDNDNHLIHF 275 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~----------~~~~~~~li~i 275 (550)
..|+||++++..+.-++... +.+.+++.||||+|||+++++++..+.. +...+..++..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~-----------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP-----------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCE 72 (337)
T ss_pred cccccHHHHHHHHHHHhcCC-----------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccCh
Confidence 46899999998876666543 3478999999999999999999998832 00111111211
Q ss_pred ecC-------------------CCCchhhhhhHHh--HHHHHHH------------hCCCCeEEeccccccCHHHHHHHH
Q 036633 276 DMG-------------------NYTELESIKHFFD--SLAALVK------------KRPYSVVLFDKIEKANSSILNLLL 322 (550)
Q Consensus 276 d~s-------------------~~~~~~~~s~liG--~lt~al~------------~~p~~VlllDEIeka~~~v~~~Ll 322 (550)
+|. ++.-..+...++| .+...++ +...+++|+|||+.+++.+|+.|+
T Consensus 73 ~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll 152 (337)
T TIGR02030 73 EVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLL 152 (337)
T ss_pred HHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHH
Confidence 111 1111223346677 3333332 233489999999999999999999
Q ss_pred HhhhhccccccccCCeEeec-CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH-
Q 036633 323 KILKTDFNRKATRGIAAFDL-TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD- 400 (550)
Q Consensus 323 ~~ld~g~~~~l~d~g~~vd~-~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~- 400 (550)
+++++|++. ++..|....+ .+.++|+|.|.. ...|++++++||...+.+. +++.
T Consensus 153 ~~l~~g~~~-v~r~G~~~~~~~r~iviat~np~--------------------eg~l~~~LldRf~l~i~l~---~p~~~ 208 (337)
T TIGR02030 153 DVAASGWNV-VEREGISIRHPARFVLVGSGNPE--------------------EGELRPQLLDRFGLHAEIR---TVRDV 208 (337)
T ss_pred HHHHhCCeE-EEECCEEEEcCCCEEEEeccccc--------------------cCCCCHHHHhhcceEEECC---CCCCH
Confidence 999999444 3333433332 346677777753 2579999999998777777 5554
Q ss_pred HHHHHHHHHHHHH----------H-------HHHhc--cCCCccccCCHHHHHHHHhcCc-ccC-CCcccHHHHHHcchh
Q 036633 401 TTRLLLREWACEE----------T-------KRRNN--DSKAVIVCPSTSALVHIASNAA-RKY-GQNGEGLKRWMDQRP 459 (550)
Q Consensus 401 e~i~~I~~~~l~~----------~-------~~~l~--~~~~~~l~~~~~a~~~L~~~~~-~~~-GaN~R~L~~~i~~~~ 459 (550)
++...|+.+.... + .+.+. ..-+-.+.+++++++++++.+. ... |- |.--.++.- .
T Consensus 209 eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~--Ra~i~l~ra-A 285 (337)
T TIGR02030 209 ELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGL--RGELTLNRA-A 285 (337)
T ss_pred HHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCC--cHHHHHHHH-H
Confidence 6666776663211 1 11110 0011146899999999998654 222 33 766666663 4
Q ss_pred hHHHHHhh
Q 036633 460 SADHVIDK 467 (550)
Q Consensus 460 la~~~l~~ 467 (550)
-|.+.+.|
T Consensus 286 rA~Aal~G 293 (337)
T TIGR02030 286 KALAAFEG 293 (337)
T ss_pred HHHHHHcC
Confidence 45555655
No 117
>PHA02244 ATPase-like protein
Probab=99.54 E-value=5.8e-13 Score=137.37 Aligned_cols=195 Identities=11% Similarity=0.042 Sum_probs=124.2
Q ss_pred hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633 204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL 283 (550)
Q Consensus 204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~ 283 (550)
+....+|+...+......+.+.. . .+.+++|.||||||||++|+++|..+.. +|++++. +.+
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l--~-------~~~PVLL~GppGtGKTtLA~aLA~~lg~------pfv~In~--l~d- 155 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIV--N-------ANIPVFLKGGAGSGKNHIAEQIAEALDL------DFYFMNA--IMD- 155 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHH--h-------cCCCEEEECCCCCCHHHHHHHHHHHhCC------CEEEEec--ChH-
Confidence 45668888888877666665541 1 2247899999999999999999999877 8998873 211
Q ss_pred hhhhhHH-----------hHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeC
Q 036633 284 ESIKHFF-----------DSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTS 351 (550)
Q Consensus 284 ~~~s~li-----------G~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~Ts 351 (550)
...++ |.|+.+++ .+++++||||+.++|+++..|..+++++ . +... ++..--.+..+|+|+
T Consensus 156 --~~~L~G~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a~p~vq~~L~~lLd~r--~-l~l~g~~i~~h~~FRlIATs 228 (383)
T PHA02244 156 --EFELKGFIDANGKFHETPFYEAFK--KGGLFFIDEIDASIPEALIIINSAIANK--F-FDFADERVTAHEDFRVISAG 228 (383)
T ss_pred --HHhhcccccccccccchHHHHHhh--cCCEEEEeCcCcCCHHHHHHHHHHhccC--e-EEecCcEEecCCCEEEEEee
Confidence 11122 25566554 4579999999999999999999999988 4 5444 443233566799999
Q ss_pred CCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHH-HHHHHHHHHHh----ccCCCccc
Q 036633 352 DLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLR-EWACEETKRRN----NDSKAVIV 426 (550)
Q Consensus 352 N~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~-~~~l~~~~~~l----~~~~~~~l 426 (550)
|............ .+.+++++++|| .+|.|. -+++-+..-+. ...|-++...+ ...|+ ..
T Consensus 229 N~~~~G~~~~y~G----------~k~L~~AllDRF-v~I~~d---yp~~~E~~i~~~~~~lv~~a~~lR~~~~~~~l-~~ 293 (383)
T PHA02244 229 NTLGKGADHIYVA----------RNKIDGATLDRF-APIEFD---YDEKIEHLISNGDEDLVNFVALLRHEMAEKGL-DH 293 (383)
T ss_pred CCCccCcccccCC----------CcccCHHHHhhc-EEeeCC---CCcHHHHHHhhhHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 9732111000000 246789999999 789998 55432222211 22333333333 33555 55
Q ss_pred cCCHHHHHHHHh
Q 036633 427 CPSTSALVHIAS 438 (550)
Q Consensus 427 ~~~~~a~~~L~~ 438 (550)
.++...+-+-+.
T Consensus 294 ~~StR~li~~a~ 305 (383)
T PHA02244 294 VFSMRAIIHGKK 305 (383)
T ss_pred cccHHHHHHHHH
Confidence 566554433333
No 118
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.54 E-value=2.7e-13 Score=152.19 Aligned_cols=210 Identities=16% Similarity=0.202 Sum_probs=136.0
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhc----------cCC---------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELY----------DNN--------- 266 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~----------~~~--------- 266 (550)
..|+||++++..+..++... +.+.+||.||+|||||++|++|+..+. .+.
T Consensus 4 ~~ivGq~~~~~al~~~av~~-----------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~ 72 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDP-----------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCE 72 (633)
T ss_pred chhcChHHHHHHHHHHhhCC-----------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccCh
Confidence 36899999997765554432 336799999999999999999999983 100
Q ss_pred ----------CCCCceeEEecCCCCchhhhhhHHh--HHHHHHH------------hCCCCeEEeccccccCHHHHHHHH
Q 036633 267 ----------DNDNHLIHFDMGNYTELESIKHFFD--SLAALVK------------KRPYSVVLFDKIEKANSSILNLLL 322 (550)
Q Consensus 267 ----------~~~~~li~id~s~~~~~~~~s~liG--~lt~al~------------~~p~~VlllDEIeka~~~v~~~Ll 322 (550)
....+|+.+.++. +...|+| .+..++. ....+|||||||+++++.+|+.|+
T Consensus 73 ~~~~~~~~~~~~~~pfv~~p~~~-----t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll 147 (633)
T TIGR02442 73 ECRRKYRPSEQRPVPFVNLPLGA-----TEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLL 147 (633)
T ss_pred hhhhcccccccCCCCeeeCCCCC-----cHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHH
Confidence 0134677766543 2456677 3333332 223479999999999999999999
Q ss_pred HhhhhccccccccCCeEe-ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHH
Q 036633 323 KILKTDFNRKATRGIAAF-DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDT 401 (550)
Q Consensus 323 ~~ld~g~~~~l~d~g~~v-d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e 401 (550)
+++++|.+. ++..|... --.+.++|+|+|.. ...|+++|++||+..|... ++.+.+
T Consensus 148 ~~le~g~~~-v~r~g~~~~~~~~~~lIat~np~--------------------eg~l~~~L~dR~~l~i~v~--~~~~~~ 204 (633)
T TIGR02442 148 DAAAMGVNR-VEREGLSVSHPARFVLIGTMNPE--------------------EGDLRPQLLDRFGLCVDVA--APRDPE 204 (633)
T ss_pred HHHhcCCEE-EEECCceeeecCCeEEEEecCCC--------------------CCCCCHHHHhhcceEEEcc--CCCchH
Confidence 999999544 33332222 22557789999863 2468999999998666655 133345
Q ss_pred HHHHHHHHHHH-----------------HHHHHh---ccCCCccccCCHHHHHHHHhcCc-ccC-CCcccHHHHHHcc
Q 036633 402 TRLLLREWACE-----------------ETKRRN---NDSKAVIVCPSTSALVHIASNAA-RKY-GQNGEGLKRWMDQ 457 (550)
Q Consensus 402 ~i~~I~~~~l~-----------------~~~~~l---~~~~~~~l~~~~~a~~~L~~~~~-~~~-GaN~R~L~~~i~~ 457 (550)
+...++...+. .+.+.+ ...-- .+.++++++++|+..+. ... |. |....++.-
T Consensus 205 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~-~V~is~~~~~~l~~~~~~~~i~s~--Ra~i~~~r~ 279 (633)
T TIGR02442 205 ERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLP-SVRISDSLIRFISELCIEFGVDGH--RADIVMARA 279 (633)
T ss_pred HHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHHhCCCCc--cHHHHHHHH
Confidence 55566554322 011111 11111 36889999999998665 333 33 666655543
No 119
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.53 E-value=2.8e-13 Score=134.14 Aligned_cols=159 Identities=19% Similarity=0.197 Sum_probs=109.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccC--HH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKAN--SS 316 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~--~~ 316 (550)
.+++|+||||||||+++.++++.+.. .......+++..... ....+.+.+.+ ..+|+||||+... +.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~~~------~~~~~~~~~~~--~dlliiDdi~~~~~~~~ 114 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKRAW------FVPEVLEGMEQ--LSLVCIDNIECIAGDEL 114 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHHhh------hhHHHHHHhhh--CCEEEEeChhhhcCCHH
Confidence 58999999999999999999998765 333455555543211 01122223322 3689999999875 44
Q ss_pred HHHHHHHh----hhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--cee
Q 036633 317 ILNLLLKI----LKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLV 390 (550)
Q Consensus 317 v~~~Ll~~----ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii 390 (550)
.+..|+.+ .+.| . +.+|+||+.....+ ..+.|+|.+|+. .++
T Consensus 115 ~~~~lf~l~n~~~e~g--~-------------~~li~ts~~~p~~l-----------------~~~~~~L~SRl~~g~~~ 162 (235)
T PRK08084 115 WEMAIFDLYNRILESG--R-------------TRLLITGDRPPRQL-----------------NLGLPDLASRLDWGQIY 162 (235)
T ss_pred HHHHHHHHHHHHHHcC--C-------------CeEEEeCCCChHHc-----------------CcccHHHHHHHhCCcee
Confidence 44444444 4444 2 23677887665433 345799999995 478
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 391 VIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 391 ~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+. |++.+++..++.+.... +|+ .+++++++||+.++. | ++|.+..++++
T Consensus 163 ~l~---~~~~~~~~~~l~~~a~~-------~~~---~l~~~v~~~L~~~~~---~-d~r~l~~~l~~ 212 (235)
T PRK08084 163 KLQ---PLSDEEKLQALQLRARL-------RGF---ELPEDVGRFLLKRLD---R-EMRTLFMTLDQ 212 (235)
T ss_pred eec---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHhhc---C-CHHHHHHHHHH
Confidence 888 99999999998764432 455 899999999998653 5 67989888886
No 120
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.52 E-value=3.5e-13 Score=139.23 Aligned_cols=224 Identities=14% Similarity=0.126 Sum_probs=136.8
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC---CCCCceeEE----ecC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN---DNDNHLIHF----DMG 278 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~---~~~~~li~i----d~s 278 (550)
..|+||++++..+.-++... ..+++||.||||||||++|++++..+.... ..+-.+.++ |+.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~-----------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~ 76 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP-----------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWA 76 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc-----------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccc
Confidence 45899999999877655422 125899999999999999999999984210 000011111 110
Q ss_pred C---------------CCchhhhhhHHh--HHHHHHHh------------CCCCeEEeccccccCHHHHHHHHHhhhhcc
Q 036633 279 N---------------YTELESIKHFFD--SLAALVKK------------RPYSVVLFDKIEKANSSILNLLLKILKTDF 329 (550)
Q Consensus 279 ~---------------~~~~~~~s~liG--~lt~al~~------------~p~~VlllDEIeka~~~v~~~Ll~~ld~g~ 329 (550)
+ .....+..+++| .+...+.. ...++||+|||+.+++.+|+.|++.+++|+
T Consensus 77 ~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~ 156 (334)
T PRK13407 77 HVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGE 156 (334)
T ss_pred cccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCC
Confidence 0 111112345777 33333321 224799999999999999999999999994
Q ss_pred ccccccCCeEeec-CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH-HHHHHHH
Q 036633 330 NRKATRGIAAFDL-TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD-TTRLLLR 407 (550)
Q Consensus 330 ~~~l~d~g~~vd~-~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~-e~i~~I~ 407 (550)
+. ++..|....+ .+.++|+|+|.. ...|++++++||.-.|... +.+. ++..+|+
T Consensus 157 v~-v~r~G~~~~~p~rfiviAt~NP~--------------------e~~l~~aLldRF~~~v~v~---~~~~~~e~~~il 212 (334)
T PRK13407 157 NV-VEREGLSIRHPARFVLVGSGNPE--------------------EGELRPQLLDRFGLSVEVR---SPRDVETRVEVI 212 (334)
T ss_pred eE-EEECCeEEecCCCEEEEecCCcc--------------------cCCCCHHHHhhcceEEEcC---CCCcHHHHHHHH
Confidence 33 3333444333 346777787853 2468999999997666666 4433 6666666
Q ss_pred HHHHHH------HH-----------HHhcc-C-CCccccCCHHHHHHHHhcCc-cc-CCCcccHHHHHHcchhhHHHHHh
Q 036633 408 EWACEE------TK-----------RRNND-S-KAVIVCPSTSALVHIASNAA-RK-YGQNGEGLKRWMDQRPSADHVID 466 (550)
Q Consensus 408 ~~~l~~------~~-----------~~l~~-~-~~~~l~~~~~a~~~L~~~~~-~~-~GaN~R~L~~~i~~~~la~~~l~ 466 (550)
...... +. +++.. + -+-.+.+++++++|+++.+. .. .|- |.--.++.- .-+.++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~--Ra~i~l~~a-A~a~A~l~ 289 (334)
T PRK13407 213 RRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGL--RGELTLLRA-ARALAAFE 289 (334)
T ss_pred HHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCc--hHHHHHHHH-HHHHHHHc
Confidence 653321 10 11110 1 01146889999999998665 32 244 665555553 44455555
Q ss_pred h
Q 036633 467 K 467 (550)
Q Consensus 467 ~ 467 (550)
|
T Consensus 290 G 290 (334)
T PRK13407 290 G 290 (334)
T ss_pred C
Confidence 4
No 121
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.51 E-value=1e-13 Score=123.61 Aligned_cols=116 Identities=26% Similarity=0.354 Sum_probs=87.7
Q ss_pred EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch---hhhhhHHhHHHHHHHhCCCCeEEeccccccCHHH
Q 036633 241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL---ESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSI 317 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~---~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v 317 (550)
+||+||||||||++|+.+|+.+.. +++.+++++.... .....+.+.+..+-.....+||+|||+|.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~------~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF------PFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS------EEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhccc------ccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 689999999999999999999876 8999999987622 2223333344444334414999999999988765
Q ss_pred -----------HHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh-hh
Q 036633 318 -----------LNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL-KL 385 (550)
Q Consensus 318 -----------~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll-~R 385 (550)
++.|+..+++. . -. -+++++|+|||.. ..++|.++ +|
T Consensus 75 ~~~~~~~~~~~~~~L~~~l~~~--~-~~-------~~~~~vI~ttn~~---------------------~~i~~~l~~~r 123 (132)
T PF00004_consen 75 QPSSSSFEQRLLNQLLSLLDNP--S-SK-------NSRVIVIATTNSP---------------------DKIDPALLRSR 123 (132)
T ss_dssp STSSSHHHHHHHHHHHHHHHTT--T-TT-------SSSEEEEEEESSG---------------------GGSCHHHHSTT
T ss_pred ccccccccccccceeeeccccc--c-cc-------cccceeEEeeCCh---------------------hhCCHhHHhCC
Confidence 88999999877 4 10 1457899999962 46789999 99
Q ss_pred ccceeEec
Q 036633 386 LDKLVVID 393 (550)
Q Consensus 386 id~ii~f~ 393 (550)
|+..|.|+
T Consensus 124 f~~~i~~~ 131 (132)
T PF00004_consen 124 FDRRIEFP 131 (132)
T ss_dssp SEEEEEE-
T ss_pred CcEEEEcC
Confidence 99888875
No 122
>PRK06893 DNA replication initiation factor; Validated
Probab=99.51 E-value=5e-13 Score=131.86 Aligned_cols=163 Identities=16% Similarity=0.218 Sum_probs=113.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccC--HH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKAN--SS 316 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~--~~ 316 (550)
..++|+||||||||+|+.++++.+.. .......++++.... ....+.+.+ ....+|+||||+... +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~y~~~~~~~~------~~~~~~~~~--~~~dlLilDDi~~~~~~~~ 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLL---NQRTAIYIPLSKSQY------FSPAVLENL--EQQDLVCLDDLQAVIGNEE 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEeeHHHhhh------hhHHHHhhc--ccCCEEEEeChhhhcCChH
Confidence 47899999999999999999998865 333455556542211 001112222 234799999999864 44
Q ss_pred HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--ceeEecC
Q 036633 317 ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLVVIDL 394 (550)
Q Consensus 317 v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii~f~~ 394 (550)
.+..|+.+++.. . .. ...++|+|+|.....+ ..+.|++.+|+. .++.+.
T Consensus 109 ~~~~l~~l~n~~--~--~~-------~~~illits~~~p~~l-----------------~~~~~~L~sRl~~g~~~~l~- 159 (229)
T PRK06893 109 WELAIFDLFNRI--K--EQ-------GKTLLLISADCSPHAL-----------------SIKLPDLASRLTWGEIYQLN- 159 (229)
T ss_pred HHHHHHHHHHHH--H--Hc-------CCcEEEEeCCCChHHc-----------------cccchhHHHHHhcCCeeeCC-
Confidence 556777777654 2 00 2345788888765443 234588999984 377788
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 395 AVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 395 ~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+++.+++..|+.+.+.. +++ .+++++++||+.+.- | ++|.+..++++
T Consensus 160 --~pd~e~~~~iL~~~a~~-------~~l---~l~~~v~~~L~~~~~---~-d~r~l~~~l~~ 206 (229)
T PRK06893 160 --DLTDEQKIIVLQRNAYQ-------RGI---ELSDEVANFLLKRLD---R-DMHTLFDALDL 206 (229)
T ss_pred --CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHhcc---C-CHHHHHHHHHH
Confidence 99999999999887743 444 899999999998653 4 66888888885
No 123
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.51 E-value=2.6e-14 Score=129.59 Aligned_cols=116 Identities=26% Similarity=0.390 Sum_probs=84.3
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh--------------HHHHHHHhCCCCeE
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD--------------SLAALVKKRPYSVV 305 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG--------------~lt~al~~~p~~Vl 305 (550)
+++|+||||||||++|+.+|+.+.. +++.+.|+..++.. .++| .+..+++ ...++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~------~~~~i~~~~~~~~~---dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il 69 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR------PVIRINCSSDTTEE---DLIGSYDPSNGQFEFKDGPLVRAMR--KGGIL 69 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC------EEEEEE-TTTSTHH---HHHCEEET-TTTTCEEE-CCCTTHH--EEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc------ceEEEEeccccccc---cceeeeeeccccccccccccccccc--ceeEE
Confidence 5899999999999999999999976 99999999876543 4455 2222222 23699
Q ss_pred EeccccccCHHHHHHHHHhhhhccccccc--cCCeEeecC-------CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc
Q 036633 306 LFDKIEKANSSILNLLLKILKTDFNRKAT--RGIAAFDLT-------NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS 376 (550)
Q Consensus 306 llDEIeka~~~v~~~Ll~~ld~g~~~~l~--d~g~~vd~~-------~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~ 376 (550)
+||||+++++++++.|+.+++++ + +. .++..+... +..||+|+|..... ..
T Consensus 70 ~lDEin~a~~~v~~~L~~ll~~~--~-~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~-----------------~~ 129 (139)
T PF07728_consen 70 VLDEINRAPPEVLESLLSLLEER--R-IQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKG-----------------RK 129 (139)
T ss_dssp EESSCGG--HHHHHTTHHHHSSS--E-EEE-TSSSEEE--TT------EEEEEEESSST-------------------TT
T ss_pred EECCcccCCHHHHHHHHHHHhhC--c-ccccCCCcEEecCcccccccceEEEEEEcCCCCC-----------------cC
Confidence 99999999999999999999999 5 44 334444444 37899999986411 35
Q ss_pred CCChhhhhhc
Q 036633 377 LFKPSLLKLL 386 (550)
Q Consensus 377 ~f~p~ll~Ri 386 (550)
.++++|++||
T Consensus 130 ~l~~al~~Rf 139 (139)
T PF07728_consen 130 ELSPALLDRF 139 (139)
T ss_dssp TTCHHHHTT-
T ss_pred cCCHHHHhhC
Confidence 7889999986
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.50 E-value=1.8e-13 Score=156.32 Aligned_cols=178 Identities=16% Similarity=0.210 Sum_probs=127.7
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~ 281 (550)
+.++||++-+..+...+.+. .+.+++|+||||||||.+|+.+|+.+...+ .....++.+|++.+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~-----------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR-----------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC-----------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHh
Confidence 57999999999988777655 346889999999999999999999874311 013467888877654
Q ss_pred chhhhhhHHh-------HHHHHHHhCCCCeEEeccccccC---------HHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633 282 ELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKAN---------SSILNLLLKILKTDFNRKATRGIAAFDLTNT 345 (550)
Q Consensus 282 ~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka~---------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ 345 (550)
.. +...| .+.+.+...+..||||||||.+. .++++.|.+.+++| . +
T Consensus 251 a~---~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~-i------------ 312 (731)
T TIGR02639 251 AG---TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--K-L------------ 312 (731)
T ss_pred hh---ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--C-e------------
Confidence 21 11223 22222333455899999999663 46789999999998 4 2
Q ss_pred EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633 346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA 423 (550)
Q Consensus 346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~ 423 (550)
.+|.+||.. .. +++| +|+|.+|| +.|.+. +++.++...|+......+.. .+
T Consensus 313 ~~IgaTt~~--e~----------------~~~~~~d~al~rRf-~~i~v~---~p~~~~~~~il~~~~~~~e~---~~-- 365 (731)
T TIGR02639 313 RCIGSTTYE--EY----------------KNHFEKDRALSRRF-QKIDVG---EPSIEETVKILKGLKEKYEE---FH-- 365 (731)
T ss_pred EEEEecCHH--HH----------------HHHhhhhHHHHHhC-ceEEeC---CCCHHHHHHHHHHHHHHHHh---cc--
Confidence 367777741 11 1233 78899999 589999 99999999999987765332 13
Q ss_pred ccccCCHHHHHHHHhcC
Q 036633 424 VIVCPSTSALVHIASNA 440 (550)
Q Consensus 424 ~~l~~~~~a~~~L~~~~ 440 (550)
.+.++++++.+++..+
T Consensus 366 -~v~i~~~al~~~~~ls 381 (731)
T TIGR02639 366 -HVKYSDEALEAAVELS 381 (731)
T ss_pred -CcccCHHHHHHHHHhh
Confidence 4589999999998743
No 125
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.50 E-value=1.5e-13 Score=142.96 Aligned_cols=158 Identities=23% Similarity=0.311 Sum_probs=117.7
Q ss_pred HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE
Q 036633 195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH 274 (550)
Q Consensus 195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~ 274 (550)
..+..+...+.+.++|+++++..+..++... ++++|.||||||||.+|+.+|+.+.. +|++
T Consensus 13 ~~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~-------------~~vll~G~PG~gKT~la~~lA~~l~~------~~~~ 73 (329)
T COG0714 13 EILGKIRSELEKVVVGDEEVIELALLALLAG-------------GHVLLEGPPGVGKTLLARALARALGL------PFVR 73 (329)
T ss_pred hHHHHHHhhcCCeeeccHHHHHHHHHHHHcC-------------CCEEEECCCCccHHHHHHHHHHHhCC------CeEE
Confidence 4456777788888999999999988888866 58999999999999999999999988 9999
Q ss_pred EecCCCCchhhhhhHHhHH-HHHH-------H--hCC--CC---eEEeccccccCHHHHHHHHHhhhhccccccccCCeE
Q 036633 275 FDMGNYTELESIKHFFDSL-AALV-------K--KRP--YS---VVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339 (550)
Q Consensus 275 id~s~~~~~~~~s~liG~l-t~al-------~--~~p--~~---VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~ 339 (550)
+.|........ ++|.. .... + ..| .. |+|+|||.+++|.+|+.||++|+++ . ++..|..
T Consensus 74 i~~t~~l~p~d---~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~--~-vtv~~~~ 147 (329)
T COG0714 74 IQCTPDLLPSD---LLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEER--Q-VTVPGLT 147 (329)
T ss_pred EecCCCCCHHH---hcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCc--E-EEECCcC
Confidence 99997765443 36611 1111 0 011 24 9999999999999999999999998 6 6666444
Q ss_pred -eecCCe-EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633 340 -FDLTNT-LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID 393 (550)
Q Consensus 340 -vd~~~~-iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~ 393 (550)
+.+... ++|+|+|.+...- ..-+++++++||.-.+.+.
T Consensus 148 ~~~~~~~f~viaT~Np~e~~g----------------~~~l~eA~ldRf~~~~~v~ 187 (329)
T COG0714 148 TIRLPPPFIVIATQNPGEYEG----------------TYPLPEALLDRFLLRIYVD 187 (329)
T ss_pred CcCCCCCCEEEEccCccccCC----------------CcCCCHHHHhhEEEEEecC
Confidence 666555 4566668432110 1345889999996555665
No 126
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.50 E-value=3.4e-14 Score=135.66 Aligned_cols=179 Identities=16% Similarity=0.126 Sum_probs=81.2
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCC----c----------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDN----H---------- 271 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~----~---------- 271 (550)
..|+||+.|+.++.-+..-. .++||.||||||||++|+.++..|......+. .
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~-------------h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~ 69 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG-------------HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPD 69 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC---------------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S--
T ss_pred hhhcCcHHHHHHHHHHHcCC-------------CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCC
Confidence 57999999998877666533 59999999999999999999988865210000 0
Q ss_pred eeEEecCCCCchh---hhhhHHhH----HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEee-cC
Q 036633 272 LIHFDMGNYTELE---SIKHFFDS----LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD-LT 343 (550)
Q Consensus 272 li~id~s~~~~~~---~~s~liG~----lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd-~~ 343 (550)
-..+..--|...| +...++|- --+.+...-.+|+||||+-.+++.+++.|++.+++|.++ +...|..+. -.
T Consensus 70 ~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~-i~R~~~~~~~Pa 148 (206)
T PF01078_consen 70 EGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVT-ISRAGGSVTYPA 148 (206)
T ss_dssp -EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEE-EEETTEEEEEB-
T ss_pred CceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEE-EEECCceEEEec
Confidence 0000111111111 22344540 011222334589999999999999999999999999655 555544443 45
Q ss_pred CeEEEEeCCCChHHHHHhhhhh--hHhhHHHHhccCCChhhhhhccceeEecCCCCCCHH
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTA--TYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDT 401 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~--~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e 401 (550)
+.++|+|+|...........+. -...-.....+.++..|++|||-.|... +++.+
T Consensus 149 ~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~---~~~~~ 205 (206)
T PF01078_consen 149 RFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVP---RVSYE 205 (206)
T ss_dssp -EEEEEEE-S--------------------------------------------------
T ss_pred ccEEEEEecccccccccccccccccccccccccccccccccccccccccccc---ccccC
Confidence 6789999997543322110000 0011111223456778999999888887 77654
No 127
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=1.5e-12 Score=135.96 Aligned_cols=188 Identities=20% Similarity=0.275 Sum_probs=128.9
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-CCCc------------
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-NDNH------------ 271 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-~~~~------------ 271 (550)
...++||++++..+..++... + -|..+||+||+|+|||++|+.+|+.+..... ...+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g---r-------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~ 91 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG---K-------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPV 91 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC---C-------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHH
Confidence 356899999999999999876 2 3478999999999999999999999976110 0001
Q ss_pred -----------eeEEecCCCCchh-hhhhHHh-----HHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccc
Q 036633 272 -----------LIHFDMGNYTELE-SIKHFFD-----SLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFN 330 (550)
Q Consensus 272 -----------li~id~s~~~~~~-~~s~liG-----~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~ 330 (550)
+..+.-.. .++. ....-|+ .+.+.+.. ..+.||+|||+|.++++.++.||+.+++.
T Consensus 92 c~~i~~~~hPdl~~l~~~~-~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp-- 168 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPF-DEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP-- 168 (351)
T ss_pred HHHHHcCCCCCEEEeeccc-ccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC--
Confidence 11111000 0000 0001111 33444333 34679999999999999999999999987
Q ss_pred cccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHH
Q 036633 331 RKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWA 410 (550)
Q Consensus 331 ~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~ 410 (550)
. .+++||+.|+.. ....|.+.+|| ..+.|. |++.+++..++...
T Consensus 169 p-----------~~~~fiLit~~~---------------------~~llptIrSRc-~~i~l~---pl~~~~~~~~L~~~ 212 (351)
T PRK09112 169 P-----------ARALFILISHSS---------------------GRLLPTIRSRC-QPISLK---PLDDDELKKALSHL 212 (351)
T ss_pred C-----------CCceEEEEECCh---------------------hhccHHHHhhc-cEEEec---CCCHHHHHHHHHHh
Confidence 5 566677776543 23458899999 799999 99999999888752
Q ss_pred HHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 411 CEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 411 l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+. ...+++++...++..+- | |.|...+.++.
T Consensus 213 -----------~~-~~~~~~~~~~~i~~~s~---G-~pr~Al~ll~~ 243 (351)
T PRK09112 213 -----------GS-SQGSDGEITEALLQRSK---G-SVRKALLLLNY 243 (351)
T ss_pred -----------hc-ccCCCHHHHHHHHHHcC---C-CHHHHHHHHhc
Confidence 11 22367888888877543 5 55666666655
No 128
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.49 E-value=4.4e-13 Score=154.49 Aligned_cols=181 Identities=15% Similarity=0.208 Sum_probs=125.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~ 281 (550)
..|+||++.+.++...+.+. +..+.+|+||||||||++|+.||+.+.... ..+..++.+|++.+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~-----------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR-----------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC-----------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh
Confidence 57999999999988887765 235889999999999999999999885410 123457888888764
Q ss_pred chhhh-----hhHHhHHHHHHHhCCCCeEEeccccccCH--------HHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633 282 ELESI-----KHFFDSLAALVKKRPYSVVLFDKIEKANS--------SILNLLLKILKTDFNRKATRGIAAFDLTNTLII 348 (550)
Q Consensus 282 ~~~~~-----s~liG~lt~al~~~p~~VlllDEIeka~~--------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI 348 (550)
..... .++...+.+..+.....|||||||+.+.. ++-+.|++.++.| . + .+|
T Consensus 256 ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~-l------------~~I 320 (852)
T TIGR03345 256 AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--E-L------------RTI 320 (852)
T ss_pred cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--C-e------------EEE
Confidence 22111 11211222222223457999999998753 4556899999999 4 2 277
Q ss_pred EeCCCChHHHHHhhhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633 349 MTSDLKDEQVYEVMLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV 426 (550)
Q Consensus 349 ~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l 426 (550)
.||+... .+++| +|+|.+|| ++|.+. +++.++...|+......+... + .+
T Consensus 321 gaTT~~e------------------~~~~~~~d~AL~rRf-~~i~v~---eps~~~~~~iL~~~~~~~e~~---~---~v 372 (852)
T TIGR03345 321 AATTWAE------------------YKKYFEKDPALTRRF-QVVKVE---EPDEETAIRMLRGLAPVLEKH---H---GV 372 (852)
T ss_pred EecCHHH------------------HhhhhhccHHHHHhC-eEEEeC---CCCHHHHHHHHHHHHHhhhhc---C---CC
Confidence 7777421 12344 79999999 699999 999999999975444332221 3 35
Q ss_pred cCCHHHHHHHHhcC
Q 036633 427 CPSTSALVHIASNA 440 (550)
Q Consensus 427 ~~~~~a~~~L~~~~ 440 (550)
.++++++.+++..+
T Consensus 373 ~i~d~al~~~~~ls 386 (852)
T TIGR03345 373 LILDEAVVAAVELS 386 (852)
T ss_pred eeCHHHHHHHHHHc
Confidence 88999998888743
No 129
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.7e-13 Score=147.42 Aligned_cols=194 Identities=22% Similarity=0.296 Sum_probs=129.3
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
..|=|-++++..|.+.|...+.+.--+...-++ .-+||+||||||||.+||++|..+.- +|+.+-..|+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL------~FlSVKGPEL---- 741 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL------NFLSVKGPEL---- 741 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee------eEEeecCHHH----
Confidence 567788999999999998853221112222244 78999999999999999999999876 7777765543
Q ss_pred hhhhHHh-------HHHHHHHhCCCCeEEeccccccCH-------------HHHHHHHHhhhhccccccccCCeEeecCC
Q 036633 285 SIKHFFD-------SLAALVKKRPYSVVLFDKIEKANS-------------SILNLLLKILKTDFNRKATRGIAAFDLTN 344 (550)
Q Consensus 285 ~~s~liG-------~lt~al~~~p~~VlllDEIeka~~-------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~ 344 (550)
....+| ..-+..|...-+||||||+|.+-| .|...||--|| | +.|+ +...
T Consensus 742 -LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD-g----ls~~----~s~~ 811 (953)
T KOG0736|consen 742 -LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD-G----LSDS----SSQD 811 (953)
T ss_pred -HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh-c----ccCC----CCCc
Confidence 556677 222333443339999999998866 25555555554 3 4442 3456
Q ss_pred eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCH-HHHHHHHHHHHHHHHHHhccC
Q 036633 345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLD-TTRLLLREWACEETKRRNNDS 421 (550)
Q Consensus 345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~-e~i~~I~~~~l~~~~~~l~~~ 421 (550)
++||-+||.+ ..++|+|+ +|||..+... |-.. +....+++ .+.+
T Consensus 812 VFViGATNRP---------------------DLLDpALLRPGRFDKLvyvG---~~~d~esk~~vL~-AlTr-------- 858 (953)
T KOG0736|consen 812 VFVIGATNRP---------------------DLLDPALLRPGRFDKLVYVG---PNEDAESKLRVLE-ALTR-------- 858 (953)
T ss_pred eEEEecCCCc---------------------cccChhhcCCCccceeEEec---CCccHHHHHHHHH-HHHH--------
Confidence 7789999985 46788888 9999988888 5444 44444433 3332
Q ss_pred CCccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 422 KAVIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 422 ~~~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++.+++++ +..|++.|-+++.. -++..++..
T Consensus 859 ---kFkLdedVdL~eiAk~cp~~~TG--ADlYsLCSd 890 (953)
T KOG0736|consen 859 ---KFKLDEDVDLVEIAKKCPPNMTG--ADLYSLCSD 890 (953)
T ss_pred ---HccCCCCcCHHHHHhhCCcCCch--hHHHHHHHH
Confidence 33455555 67778877644443 567666665
No 130
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.1e-13 Score=149.55 Aligned_cols=192 Identities=20% Similarity=0.263 Sum_probs=128.8
Q ss_pred cccCcHHHHHHHHHHHhcchhhhcCCCC-cCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 207 RVFGQNDAIDVIFEALTKPKAAKKGLSS-RRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~-~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
.+.|-+.++..+..++...+...-.+.. ..+| ..+||+||||||||.+|+++|..+.. +|+.++++++.
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~------~fi~v~~~~l~--- 313 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS------RFISVKGSELL--- 313 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC------eEEEeeCHHHh---
Confidence 4556666776666666544110110110 1134 79999999999999999999998766 99999999774
Q ss_pred hhhhHHh--------HHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633 285 SIKHFFD--------SLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNT 345 (550)
Q Consensus 285 ~~s~liG--------~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ 345 (550)
++++| .|..|-...| +||||||||++- ..+.+.||..++.- . ..+++
T Consensus 314 --sk~vGesek~ir~~F~~A~~~~p-~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~--e---------~~~~v 379 (494)
T COG0464 314 --SKWVGESEKNIRELFEKARKLAP-SIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGI--E---------KAEGV 379 (494)
T ss_pred --ccccchHHHHHHHHHHHHHcCCC-cEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCC--C---------ccCce
Confidence 44555 3333433445 999999999763 25777888777533 2 22567
Q ss_pred EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633 346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA 423 (550)
Q Consensus 346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~ 423 (550)
++|.|||.. ..++|+++. |+|.+|.|. +.+.++...|+..++.+ .+.
T Consensus 380 ~vi~aTN~p---------------------~~ld~a~lR~gRfd~~i~v~---~pd~~~r~~i~~~~~~~-------~~~ 428 (494)
T COG0464 380 LVIAATNRP---------------------DDLDPALLRPGRFDRLIYVP---LPDLEERLEIFKIHLRD-------KKP 428 (494)
T ss_pred EEEecCCCc---------------------cccCHhhcccCccceEeecC---CCCHHHHHHHHHHHhcc-------cCC
Confidence 889999975 466788887 999999999 99999999999998853 211
Q ss_pred ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
. -..+-..+.+++... |..|.++..+++.
T Consensus 429 -~-~~~~~~~~~l~~~t~---~~sgadi~~i~~e 457 (494)
T COG0464 429 -P-LAEDVDLEELAEITE---GYSGADIAALVRE 457 (494)
T ss_pred -c-chhhhhHHHHHHHhc---CCCHHHHHHHHHH
Confidence 1 122333445554211 1133678887776
No 131
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.48 E-value=4.1e-13 Score=143.30 Aligned_cols=196 Identities=18% Similarity=0.219 Sum_probs=125.6
Q ss_pred CcccCcHHHHHHHHHHHhcchhh-----hcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAA-----KKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~-----~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
..|.|.+..++.+.+++...+.+ ..|+. .|..+||+||||||||++|+++|..+.. +|++++.+++
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~---~p~gVLL~GPPGTGKT~LAraIA~el~~------~fi~V~~seL 253 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK---PPKGVILYGPPGTGKTLLAKAVANETSA------TFLRVVGSEL 253 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC---CCcEEEEECCCCCCHHHHHHHHHHhhCC------CEEEEecchh
Confidence 45789999999999988654110 12332 3367899999999999999999998866 8999988876
Q ss_pred Cchhh--hhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633 281 TELES--IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLI 347 (550)
Q Consensus 281 ~~~~~--~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii 347 (550)
..... ...++..+....+....+||||||||.+. ..++..+++++..- ..+. .-.++.|
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L--dg~~------~~~~V~V 325 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL--DGFD------SRGDVKV 325 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH--hhhc------ccCCeEE
Confidence 43211 01111122222233334899999998652 34566666665321 0010 1135678
Q ss_pred EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633 348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI 425 (550)
Q Consensus 348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~ 425 (550)
|+|||.. ..++|+++ +|+|..|.|. +++.++...|+..++.+ ..
T Consensus 326 I~ATNr~---------------------d~LDpaLlRpGRfd~~I~~~---~Pd~~~R~~Il~~~~~k-------~~--- 371 (438)
T PTZ00361 326 IMATNRI---------------------ESLDPALIRPGRIDRKIEFP---NPDEKTKRRIFEIHTSK-------MT--- 371 (438)
T ss_pred EEecCCh---------------------HHhhHHhccCCeeEEEEEeC---CCCHHHHHHHHHHHHhc-------CC---
Confidence 9999963 34567776 6999999999 99999999999876642 21
Q ss_pred ccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 426 VCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 426 l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+++++ .+.++..+. |.++.+++.++..
T Consensus 372 --l~~dvdl~~la~~t~---g~sgAdI~~i~~e 399 (438)
T PTZ00361 372 --LAEDVDLEEFIMAKD---ELSGADIKAICTE 399 (438)
T ss_pred --CCcCcCHHHHHHhcC---CCCHHHHHHHHHH
Confidence 22221 334444322 3355888888775
No 132
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=1e-12 Score=137.86 Aligned_cols=156 Identities=21% Similarity=0.323 Sum_probs=109.7
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-CCC--------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-NDN-------------- 270 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-~~~-------------- 270 (550)
..|+||+.+++.+.+++... + -|..+||+||+|+||+++|..+|+.+...+. ...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~---r-------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~ 88 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG---R-------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD 88 (365)
T ss_pred hhccChHHHHHHHHHHHHcC---C-------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC
Confidence 57999999999999998876 1 3478999999999999999999999986210 000
Q ss_pred -------------ceeEEecCCCCchhh-hhhHHh-----HHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhh
Q 036633 271 -------------HLIHFDMGNYTELES-IKHFFD-----SLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKT 327 (550)
Q Consensus 271 -------------~li~id~s~~~~~~~-~s~liG-----~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~ 327 (550)
.+..+.-. +.++.. .+.-|+ .+.+.+.. ..+.||+|||+|.+++..++.||+.+++
T Consensus 89 c~~c~~i~~~~HPDl~~i~~~-~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 89 HPVARRIAAGAHGGLLTLERS-WNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred ChHHHHHHccCCCCeEEEecc-cccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 11111100 001000 001122 23333332 3346999999999999999999999998
Q ss_pred ccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHH
Q 036633 328 DFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLR 407 (550)
Q Consensus 328 g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~ 407 (550)
. . .+++||++|+... ...|.+.+|| ..+.|. |++.+++..++
T Consensus 168 p--p-----------~~~~~IL~t~~~~---------------------~llpti~SRc-~~i~l~---~l~~~~i~~~L 209 (365)
T PRK07471 168 P--P-----------ARSLFLLVSHAPA---------------------RLLPTIRSRC-RKLRLR---PLAPEDVIDAL 209 (365)
T ss_pred C--C-----------CCeEEEEEECCch---------------------hchHHhhccc-eEEECC---CCCHHHHHHHH
Confidence 7 5 5677888777542 3457789999 799999 99999998887
Q ss_pred HHH
Q 036633 408 EWA 410 (550)
Q Consensus 408 ~~~ 410 (550)
...
T Consensus 210 ~~~ 212 (365)
T PRK07471 210 AAA 212 (365)
T ss_pred HHh
Confidence 654
No 133
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.47 E-value=6e-13 Score=124.22 Aligned_cols=141 Identities=25% Similarity=0.365 Sum_probs=95.2
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-----------------CCCce
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-----------------NDNHL 272 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-----------------~~~~l 272 (550)
||+.+++.+.+.+... + -|..+||+||+|+||+++|..+|+.++.... ....+
T Consensus 1 gq~~~~~~L~~~~~~~---~-------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~ 70 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG---R-------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDF 70 (162)
T ss_dssp S-HHHHHHHHHHHHCT---C---------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTE
T ss_pred CcHHHHHHHHHHHHcC---C-------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcce
Confidence 8999999999999866 1 3478999999999999999999999987421 12334
Q ss_pred eEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633 273 IHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLII 348 (550)
Q Consensus 273 i~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI 348 (550)
..++-........+.... .+.+.+.. .++.|++||++|+++++.+|+||+.||+. . .+++||
T Consensus 71 ~~~~~~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep--p-----------~~~~fi 136 (162)
T PF13177_consen 71 IIIKPDKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP--P-----------ENTYFI 136 (162)
T ss_dssp EEEETTTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST--T-----------TTEEEE
T ss_pred EEEecccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC--C-----------CCEEEE
Confidence 444433221111111111 33333333 34569999999999999999999999998 6 788888
Q ss_pred EeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC
Q 036633 349 MTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL 399 (550)
Q Consensus 349 ~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~ 399 (550)
++|+.. ..+.|.+++|| ..|.|. |++
T Consensus 137 L~t~~~---------------------~~il~TI~SRc-~~i~~~---~ls 162 (162)
T PF13177_consen 137 LITNNP---------------------SKILPTIRSRC-QVIRFR---PLS 162 (162)
T ss_dssp EEES-G---------------------GGS-HHHHTTS-EEEEE-------
T ss_pred EEECCh---------------------HHChHHHHhhc-eEEecC---CCC
Confidence 888753 45678899999 899999 875
No 134
>PRK08727 hypothetical protein; Validated
Probab=99.47 E-value=2.6e-12 Score=127.16 Aligned_cols=185 Identities=14% Similarity=0.158 Sum_probs=124.9
Q ss_pred hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633 204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL 283 (550)
Q Consensus 204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~ 283 (550)
+...++|.+.++..+..... . . ....++|+||||||||+++.+++..+.. .....+.+++.++.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~---~-------~~~~l~l~G~~G~GKThL~~a~~~~~~~---~~~~~~y~~~~~~~-- 81 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G---Q-------SSDWLYLSGPAGTGKTHLALALCAAAEQ---AGRSSAYLPLQAAA-- 81 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c---c-------CCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEeHHHhh--
Confidence 44567788776655432221 1 0 1247999999999999999999988766 44455666665432
Q ss_pred hhhhhHHhHHHHHHHh-CCCCeEEeccccccC--HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 284 ESIKHFFDSLAALVKK-RPYSVVLFDKIEKAN--SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 284 ~~~s~liG~lt~al~~-~p~~VlllDEIeka~--~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
+.+...+.. ....+|+|||++.+. +.-+..|+.++... + . +..-+|+|||.....+
T Consensus 82 -------~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~--~---~-------~~~~vI~ts~~~p~~l-- 140 (233)
T PRK08727 82 -------GRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNRA--R---A-------AGITLLYTARQMPDGL-- 140 (233)
T ss_pred -------hhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHH--H---H-------cCCeEEEECCCChhhh--
Confidence 122222222 234699999999875 55566777777654 2 0 1223788888766544
Q ss_pred hhhhhhHhhHHHHhccCCChhhhhhc--cceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHh
Q 036633 361 VMLTATYGRVNEVTGSLFKPSLLKLL--DKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIAS 438 (550)
Q Consensus 361 ~~~~~~~~~~~~~l~~~f~p~ll~Ri--d~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~ 438 (550)
..+.|++.+|+ ..++.|. |++.+++..++...... .|+ .++++++++|+.
T Consensus 141 ---------------~~~~~dL~SRl~~~~~~~l~---~~~~e~~~~iL~~~a~~-------~~l---~l~~e~~~~La~ 192 (233)
T PRK08727 141 ---------------ALVLPDLRSRLAQCIRIGLP---VLDDVARAAVLRERAQR-------RGL---ALDEAAIDWLLT 192 (233)
T ss_pred ---------------hhhhHHHHHHHhcCceEEec---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHH
Confidence 34578999995 3578888 99999999999976543 344 899999999998
Q ss_pred cCcccCCCcccHHHHHHcc
Q 036633 439 NAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 439 ~~~~~~GaN~R~L~~~i~~ 457 (550)
++- | ..|.+-+.++.
T Consensus 193 ~~~---r-d~r~~l~~L~~ 207 (233)
T PRK08727 193 HGE---R-ELAGLVALLDR 207 (233)
T ss_pred hCC---C-CHHHHHHHHHH
Confidence 643 3 44666666764
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.47 E-value=1.3e-12 Score=139.62 Aligned_cols=197 Identities=18% Similarity=0.216 Sum_probs=130.3
Q ss_pred hhcCcccCcHHHH-HHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 203 RLKKRVFGQNDAI-DVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 203 ~L~~~viGQ~~ai-~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
.+...++|.+... ...+..+.. .|..+ .+++|+||||+|||+|++++++.+.... ....++.+++.++
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~---------~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~ 177 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAE---------NPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKF 177 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHh---------CcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHH
Confidence 4556688876653 112222221 12333 6799999999999999999999986510 1346788887766
Q ss_pred CchhhhhhH---HhHHHHHHHhCCCCeEEeccccccCH--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCCh
Q 036633 281 TELESIKHF---FDSLAALVKKRPYSVVLFDKIEKANS--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKD 355 (550)
Q Consensus 281 ~~~~~~s~l---iG~lt~al~~~p~~VlllDEIeka~~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~ 355 (550)
......+.. +..+.+.++. ..+|+||||+.+.. ..+..|+.+++.- . . .+..+|+|||...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~l~~~~~~~~~l~~~~n~~--~---~-------~~~~iiits~~~p 243 (405)
T TIGR00362 178 TNDFVNALRNNKMEEFKEKYRS--VDLLLIDDIQFLAGKERTQEEFFHTFNAL--H---E-------NGKQIVLTSDRPP 243 (405)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh--CCEEEEehhhhhcCCHHHHHHHHHHHHHH--H---H-------CCCCEEEecCCCH
Confidence 432111000 0133333433 47999999997643 4667777777543 1 1 1123678888765
Q ss_pred HHHHHhhhhhhHhhHHHHhccCCChhhhhhccc--eeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHH
Q 036633 356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK--LVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL 433 (550)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~--ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~ 433 (550)
..+ ..+.+.+.+|+.. ++.|. |++.+++..|+...+.. .++ .++++++
T Consensus 244 ~~l-----------------~~l~~~l~SRl~~g~~v~i~---~pd~~~r~~il~~~~~~-------~~~---~l~~e~l 293 (405)
T TIGR00362 244 KEL-----------------PGLEERLRSRFEWGLVVDIE---PPDLETRLAILQKKAEE-------EGL---ELPDEVL 293 (405)
T ss_pred HHH-----------------hhhhhhhhhhccCCeEEEeC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHH
Confidence 443 2356789999964 78999 99999999999887754 444 7899999
Q ss_pred HHHHhcCcccCCCcccHHHHHHcc
Q 036633 434 VHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 434 ~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++|+.+.- | |+|.|..++.+
T Consensus 294 ~~ia~~~~---~-~~r~l~~~l~~ 313 (405)
T TIGR00362 294 EFIAKNIR---S-NVRELEGALNR 313 (405)
T ss_pred HHHHHhcC---C-CHHHHHHHHHH
Confidence 99998532 5 88999999886
No 136
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.1e-13 Score=140.04 Aligned_cols=189 Identities=21% Similarity=0.237 Sum_probs=124.4
Q ss_pred cCcccCcHHHHHHHHH---HHhcch-hhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 205 KKRVFGQNDAIDVIFE---ALTKPK-AAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~---~l~~~~-~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
-+.|.|.|+|+..+-+ .++... +.+.|.. -|.-+||+||||||||.|||++|-.... ||+....|+|
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGK---LPKGVLLvGPPGTGKTlLARAvAGEA~V------PFF~~sGSEF 373 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGK---LPKGVLLVGPPGTGKTLLARAVAGEAGV------PFFYASGSEF 373 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCc---CCCceEEeCCCCCchhHHHHHhhcccCC------CeEeccccch
Confidence 4678999999965544 444330 0133332 3467899999999999999999987666 9999998888
Q ss_pred CchhhhhhHHh-------HHHHHHHhCCCCeEEeccccccC----H-------HHHHHHHHhhhhccccccccCCeEeec
Q 036633 281 TELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKAN----S-------SILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 281 ~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka~----~-------~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
-+ .++| .|-.+.+.+..|||||||||... + ..+|.||--|| | +.-+
T Consensus 374 dE-----m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmD-G----F~qN------ 437 (752)
T KOG0734|consen 374 DE-----MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMD-G----FKQN------ 437 (752)
T ss_pred hh-----hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhc-C----cCcC------
Confidence 43 3344 34444444444999999998542 1 23455554443 4 2222
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND 420 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~ 420 (550)
...|||.+||.. ..++++|. +|||..|..+ ..+-.-..+|+..++.+
T Consensus 438 eGiIvigATNfp---------------------e~LD~AL~RPGRFD~~v~Vp---~PDv~GR~eIL~~yl~k------- 486 (752)
T KOG0734|consen 438 EGIIVIGATNFP---------------------EALDKALTRPGRFDRHVTVP---LPDVRGRTEILKLYLSK------- 486 (752)
T ss_pred CceEEEeccCCh---------------------hhhhHHhcCCCccceeEecC---CCCcccHHHHHHHHHhc-------
Confidence 246788899985 23445555 8999999888 66777788899988853
Q ss_pred CCCccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 421 SKAVIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 421 ~~~~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ ..++++ ...|+. +.| |.+|-+|.+.+++
T Consensus 487 --i---~~~~~VD~~iiAR-GT~--GFsGAdLaNlVNq 516 (752)
T KOG0734|consen 487 --I---PLDEDVDPKIIAR-GTP--GFSGADLANLVNQ 516 (752)
T ss_pred --C---CcccCCCHhHhcc-CCC--CCchHHHHHHHHH
Confidence 2 233333 233444 555 4455889999987
No 137
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.6e-13 Score=142.39 Aligned_cols=159 Identities=21% Similarity=0.288 Sum_probs=119.2
Q ss_pred cccCcHHHHHHHHHHHhcchh----hhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 207 RVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
.+=|-+..+..++..+...++ +..|+ +| .-+||+||||||||.||++||..+.- ||+.++..++
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv----~PprGvLlHGPPGCGKT~lA~AiAgel~v------Pf~~isApei- 259 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGV----RPPRGVLLHGPPGCGKTSLANAIAGELGV------PFLSISAPEI- 259 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCC----CCCCceeeeCCCCccHHHHHHHHhhhcCC------ceEeecchhh-
Confidence 456777888777777654311 24455 45 68999999999999999999999988 9999998775
Q ss_pred chhhhhhHHh--------HHHHHHHhCCCCeEEeccccccCH-----------HHHHHHHHhhhhccccccccCCeEeec
Q 036633 282 ELESIKHFFD--------SLAALVKKRPYSVVLFDKIEKANS-----------SILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 282 ~~~~~s~liG--------~lt~al~~~p~~VlllDEIeka~~-----------~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
+|..-| .|.+|....| +||||||||...| .+...||..||+=.+. -++ |
T Consensus 260 ----vSGvSGESEkkiRelF~~A~~~aP-civFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~-~~~-g----- 327 (802)
T KOG0733|consen 260 ----VSGVSGESEKKIRELFDQAKSNAP-CIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE-KTK-G----- 327 (802)
T ss_pred ----hcccCcccHHHHHHHHHHHhccCC-eEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc-ccC-C-----
Confidence 333333 5566666677 9999999997765 4778888888865222 111 1
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACE 412 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~ 412 (550)
..++||.+||.+ ..+.|+|. +|||.-|.+. -.++....+|++..+.
T Consensus 328 ~~VlVIgATnRP---------------------DslDpaLRRaGRFdrEI~l~---vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 328 DPVLVIGATNRP---------------------DSLDPALRRAGRFDREICLG---VPSETAREEILRIICR 375 (802)
T ss_pred CCeEEEecCCCC---------------------cccCHHHhccccccceeeec---CCchHHHHHHHHHHHh
Confidence 347899999986 46778887 8999999999 7788888888887774
No 138
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.45 E-value=7.2e-13 Score=156.25 Aligned_cols=169 Identities=19% Similarity=0.199 Sum_probs=108.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh-------------h--------h---------h-
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE-------------S--------I---------K- 287 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~-------------~--------~---------s- 287 (550)
..+||+||||||||++|++||..++. ||+.++++++.+.. + + .
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es~V------PFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~ 1704 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNSYV------PFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTM 1704 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhcCC------ceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhh
Confidence 68999999999999999999999887 99999998876421 0 0 0
Q ss_pred -------hHH--h------HHHHHHHhCCCCeEEeccccccCHH-----HHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633 288 -------HFF--D------SLAALVKKRPYSVVLFDKIEKANSS-----ILNLLLKILKTDFNRKATRGIAAFDLTNTLI 347 (550)
Q Consensus 288 -------~li--G------~lt~al~~~p~~VlllDEIeka~~~-----v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii 347 (550)
... | .+..|-+..| |||+|||||.+.+. .++.|+..|+.. . ....-++++|
T Consensus 1705 ~n~~~~~m~~~e~~~rIr~lFelARk~SP-CIIFIDEIDaL~~~ds~~ltL~qLLneLDg~--~------~~~s~~~VIV 1775 (2281)
T CHL00206 1705 MNALTMDMMPKIDRFYITLQFELAKAMSP-CIIWIPNIHDLNVNESNYLSLGLLVNSLSRD--C------ERCSTRNILV 1775 (2281)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHCCC-eEEEEEchhhcCCCccceehHHHHHHHhccc--c------ccCCCCCEEE
Confidence 000 1 2333333455 99999999988753 356777777633 1 0112357889
Q ss_pred EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633 348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI 425 (550)
Q Consensus 348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~ 425 (550)
|+|||.+ ...+|+|+ +|+|..|.+. .++.....+++...+. ..|+ .
T Consensus 1776 IAATNRP---------------------D~LDPALLRPGRFDR~I~Ir---~Pd~p~R~kiL~ILl~-------tkg~-~ 1823 (2281)
T CHL00206 1776 IASTHIP---------------------QKVDPALIAPNKLNTCIKIR---RLLIPQQRKHFFTLSY-------TRGF-H 1823 (2281)
T ss_pred EEeCCCc---------------------ccCCHhHcCCCCCCeEEEeC---CCCchhHHHHHHHHHh-------hcCC-C
Confidence 9999985 57899999 5999999998 5554444444432221 1233 2
Q ss_pred ccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 426 VCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 426 l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+.-+..-.+.++... + |.+|++|..+++.
T Consensus 1824 L~~~~vdl~~LA~~T-~--GfSGADLanLvNE 1852 (2281)
T CHL00206 1824 LEKKMFHTNGFGSIT-M--GSNARDLVALTNE 1852 (2281)
T ss_pred CCcccccHHHHHHhC-C--CCCHHHHHHHHHH
Confidence 221111244555532 2 4455888877654
No 139
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=2.3e-12 Score=133.15 Aligned_cols=155 Identities=17% Similarity=0.241 Sum_probs=109.8
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC--CCCCceeEEecCCCCch
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN--DNDNHLIHFDMGNYTEL 283 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~--~~~~~li~id~s~~~~~ 283 (550)
+.|+||+.+++.+..++... +-|..+||+||+|+|||++|+.+|+.+.+.. .....+..+...+ ...
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~-~~~ 72 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN-KKS 72 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-CCC
Confidence 46899999999999988765 1347899999999999999999999987621 0111222232110 000
Q ss_pred hhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633 284 ESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY 359 (550)
Q Consensus 284 ~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~ 359 (550)
-.+.. +-.+.+.+...| +.|+++|++|+++++.+|.||+.+++. . .+++||++|+..
T Consensus 73 i~v~~-ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep--p-----------~~t~~il~~~~~----- 133 (313)
T PRK05564 73 IGVDD-IRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP--P-----------KGVFIILLCENL----- 133 (313)
T ss_pred CCHHH-HHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCC--C-----------CCeEEEEEeCCh-----
Confidence 01111 113333333344 569999999999999999999999987 5 667788877532
Q ss_pred HhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHH
Q 036633 360 EVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWA 410 (550)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~ 410 (550)
..+.|.+.+|| .++.|. +++.+++...+...
T Consensus 134 ----------------~~ll~TI~SRc-~~~~~~---~~~~~~~~~~l~~~ 164 (313)
T PRK05564 134 ----------------EQILDTIKSRC-QIYKLN---RLSKEEIEKFISYK 164 (313)
T ss_pred ----------------HhCcHHHHhhc-eeeeCC---CcCHHHHHHHHHHH
Confidence 25567899999 799999 99999987776654
No 140
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=1.8e-12 Score=133.49 Aligned_cols=157 Identities=20% Similarity=0.276 Sum_probs=111.0
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------CCCCcee
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------DNDNHLI 273 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------~~~~~li 273 (550)
+.|+||++++..+..++... + -|..+||+||+|+||+++|.++|+.+.+.+ .....++
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~---r-------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~ 73 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN---R-------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLL 73 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC---C-------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEE
Confidence 57999999999999999876 2 347999999999999999999999998621 0001112
Q ss_pred EEecCCCCchhhh--------------hhHHh-----HHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccc
Q 036633 274 HFDMGNYTELESI--------------KHFFD-----SLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFN 330 (550)
Q Consensus 274 ~id~s~~~~~~~~--------------s~liG-----~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~ 330 (550)
.+......+...+ ...|+ .+.+.+... ++.|++||++|++++..+|.||+.||+.
T Consensus 74 ~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP-- 151 (314)
T PRK07399 74 WVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP-- 151 (314)
T ss_pred EEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC--
Confidence 1111000000000 00111 445555544 4579999999999999999999999987
Q ss_pred cccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHH
Q 036633 331 RKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWA 410 (550)
Q Consensus 331 ~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~ 410 (550)
.+++||++|+.. ..+-|.+.+|| .++.|. |++.+++..++...
T Consensus 152 ------------p~~~fILi~~~~---------------------~~Ll~TI~SRc-q~i~f~---~l~~~~~~~~L~~~ 194 (314)
T PRK07399 152 ------------GNGTLILIAPSP---------------------ESLLPTIVSRC-QIIPFY---RLSDEQLEQVLKRL 194 (314)
T ss_pred ------------CCCeEEEEECCh---------------------HhCcHHHHhhc-eEEecC---CCCHHHHHHHHHHh
Confidence 245677776632 35667899999 899999 99999998888764
Q ss_pred H
Q 036633 411 C 411 (550)
Q Consensus 411 l 411 (550)
.
T Consensus 195 ~ 195 (314)
T PRK07399 195 G 195 (314)
T ss_pred h
Confidence 3
No 141
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.45 E-value=5.5e-13 Score=144.32 Aligned_cols=170 Identities=19% Similarity=0.231 Sum_probs=110.2
Q ss_pred CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEe
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFD 276 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id 276 (550)
..|.|.+..++.+..++..... ...|+. .|..+||+||||||||++|+++|+.+.... .....|+.+.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLK---PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC---CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 4588999999999998864311 122332 236799999999999999999999985410 0012233444
Q ss_pred cCCCCchh--hhhhHHhHHHHHHHh----CCCCeEEeccccccCH------------HHHHHHHHhhhhccccccccCCe
Q 036633 277 MGNYTELE--SIKHFFDSLAALVKK----RPYSVVLFDKIEKANS------------SILNLLLKILKTDFNRKATRGIA 338 (550)
Q Consensus 277 ~s~~~~~~--~~s~liG~lt~al~~----~p~~VlllDEIeka~~------------~v~~~Ll~~ld~g~~~~l~d~g~ 338 (550)
.+++.... ...+.+..+.+..+. ...+||||||+|.+.+ .+.+.||..++.- .
T Consensus 259 ~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl--~------- 329 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV--E------- 329 (512)
T ss_pred chhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc--c-------
Confidence 33322110 011111122222222 2348999999997531 2456667666532 1
Q ss_pred EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHH
Q 036633 339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEE 413 (550)
Q Consensus 339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~ 413 (550)
...+.+||+|||.. ..++|+++. |||..|.|. +++.++...|+..++..
T Consensus 330 --~~~~ViVI~ATN~~---------------------d~LDpALlRpGRfD~~I~~~---~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 330 --SLDNVIVIGASNRE---------------------DMIDPAILRPGRLDVKIRIE---RPDAEAAADIFSKYLTD 380 (512)
T ss_pred --cCCceEEEeccCCh---------------------hhCCHhhcCccccceEEEeC---CCCHHHHHHHHHHHhhc
Confidence 12567899999974 467899986 999999999 99999999999998853
No 142
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.44 E-value=1.4e-12 Score=133.61 Aligned_cols=176 Identities=12% Similarity=0.110 Sum_probs=116.6
Q ss_pred ccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhh
Q 036633 208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287 (550)
Q Consensus 208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s 287 (550)
++=-...++++.-.+.+. ...+..-+.|..++|+||||||||.+|+++|..+.. +++.++.+++. +
T Consensus 121 ~~~~p~f~dk~~~hi~kn---~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~------~~i~vsa~eL~-----s 186 (413)
T PLN00020 121 YYIAPAFMDKVAVHIAKN---FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGI------EPIVMSAGELE-----S 186 (413)
T ss_pred cccCHHHHHHHHHHHHhh---hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC------CeEEEEHHHhh-----c
Confidence 333455566666666655 332222234489999999999999999999999987 89999998874 3
Q ss_pred hHHh--------HHHHHHH-----hCCCCeEEeccccccCH-----------HH-HHHHHHhhhhccccccccCC---eE
Q 036633 288 HFFD--------SLAALVK-----KRPYSVVLFDKIEKANS-----------SI-LNLLLKILKTDFNRKATRGI---AA 339 (550)
Q Consensus 288 ~liG--------~lt~al~-----~~p~~VlllDEIeka~~-----------~v-~~~Ll~~ld~g~~~~l~d~g---~~ 339 (550)
.++| .+..|-. .+| +||||||||..-+ .+ ...|+.++|+- ..+...| ..
T Consensus 187 k~vGEsEk~IR~~F~~A~~~a~~~~aP-cVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p--~~v~l~G~w~~~ 263 (413)
T PLN00020 187 ENAGEPGKLIRQRYREAADIIKKKGKM-SCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNP--TNVSLGGDWREK 263 (413)
T ss_pred CcCCcHHHHHHHHHHHHHHHhhccCCC-eEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCC--cccccccccccc
Confidence 3344 3333322 235 8999999997643 12 35788888753 1011101 11
Q ss_pred eecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 036633 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRR 417 (550)
Q Consensus 340 vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~ 417 (550)
-...+++||+|||.. ..++|+|+. |||..+ . ..+.++...|++..+.+
T Consensus 264 ~~~~~V~VIaTTNrp---------------------d~LDpALlRpGRfDk~i--~---lPd~e~R~eIL~~~~r~---- 313 (413)
T PLN00020 264 EEIPRVPIIVTGNDF---------------------STLYAPLIRDGRMEKFY--W---APTREDRIGVVHGIFRD---- 313 (413)
T ss_pred ccCCCceEEEeCCCc---------------------ccCCHhHcCCCCCCcee--C---CCCHHHHHHHHHHHhcc----
Confidence 123568899999975 467889996 999864 3 45899999999877732
Q ss_pred hccCCCccccCCHHHHHHHHh
Q 036633 418 NNDSKAVIVCPSTSALVHIAS 438 (550)
Q Consensus 418 l~~~~~~~l~~~~~a~~~L~~ 438 (550)
. .++..-+..|++
T Consensus 314 ---~-----~l~~~dv~~Lv~ 326 (413)
T PLN00020 314 ---D-----GVSREDVVKLVD 326 (413)
T ss_pred ---C-----CCCHHHHHHHHH
Confidence 2 345566666776
No 143
>PRK05642 DNA replication initiation factor; Validated
Probab=99.44 E-value=4.6e-12 Score=125.38 Aligned_cols=162 Identities=12% Similarity=0.177 Sum_probs=114.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccC--HH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKAN--SS 316 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~--~~ 316 (550)
..++|+||+|||||+|+++++..+.. .....+.+++.++... ...+.+.++. ..+|+||+++... +.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~---~~~~v~y~~~~~~~~~------~~~~~~~~~~--~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ---RGEPAVYLPLAELLDR------GPELLDNLEQ--YELVCLDDLDVIAGKAD 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEeeHHHHHhh------hHHHHHhhhh--CCEEEEechhhhcCChH
Confidence 68899999999999999999987754 3446777887665421 1123333443 3599999998664 56
Q ss_pred HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--ceeEecC
Q 036633 317 ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLVVIDL 394 (550)
Q Consensus 317 v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii~f~~ 394 (550)
.+..|+.+++.- . + ++..+|+||+.....+ ..+.|++.+|+. .++.+.
T Consensus 115 ~~~~Lf~l~n~~--~---~-------~g~~ilits~~~p~~l-----------------~~~~~~L~SRl~~gl~~~l~- 164 (234)
T PRK05642 115 WEEALFHLFNRL--R---D-------SGRRLLLAASKSPREL-----------------PIKLPDLKSRLTLALVFQMR- 164 (234)
T ss_pred HHHHHHHHHHHH--H---h-------cCCEEEEeCCCCHHHc-----------------CccCccHHHHHhcCeeeecC-
Confidence 667788777532 1 1 1234788888755332 345799999995 466678
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 395 AVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 395 ~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
|++.+++..++...... .|+ .+++++++||+.+.- | ++|.+...++.
T Consensus 165 --~~~~e~~~~il~~ka~~-------~~~---~l~~ev~~~L~~~~~---~-d~r~l~~~l~~ 211 (234)
T PRK05642 165 --GLSDEDKLRALQLRASR-------RGL---HLTDEVGHFILTRGT---R-SMSALFDLLER 211 (234)
T ss_pred --CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHhcC---C-CHHHHHHHHHH
Confidence 99999999998865422 344 789999999998653 4 66989988886
No 144
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.44 E-value=2.6e-12 Score=129.35 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=87.6
Q ss_pred CeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhc-cCCChh
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTG-SLFKPS 381 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~-~~f~p~ 381 (550)
+|+|+||++-++-+.+..|.+.+++. - --||||+||.|-..+.. ++ ... ..++.+
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse--~------------aPIii~AtNRG~~kiRG---Td-------~~sPhGIP~D 348 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESE--L------------APIIILATNRGMTKIRG---TD-------IESPHGIPLD 348 (450)
T ss_pred ceEEEechhhhhHHHHHHHHHHhhcc--c------------CcEEEEEcCCceeeecc---cC-------CcCCCCCCHh
Confidence 79999999999999999999999987 2 24699999998766533 10 001 246889
Q ss_pred hhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 382 LLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 382 ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
|++|+ -||... |++.++++.|+...... . .+.++++|+++|++.+. -..|+.+++-
T Consensus 349 lLDRl-lII~t~---py~~~EireIi~iRa~e-------e---~i~l~~~Ale~L~~ig~------etSLRYa~qL 404 (450)
T COG1224 349 LLDRL-LIISTR---PYSREEIREIIRIRAKE-------E---DIELSDDALEYLTDIGE------ETSLRYAVQL 404 (450)
T ss_pred hhhhe-eEEecC---CCCHHHHHHHHHHhhhh-------h---ccccCHHHHHHHHhhch------hhhHHHHHHh
Confidence 99999 899999 99999999999987643 4 44899999999998643 2556666665
No 145
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.44 E-value=2.5e-12 Score=122.86 Aligned_cols=146 Identities=24% Similarity=0.287 Sum_probs=101.4
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------CCCceeEEecCCCCchhhhhhHHhHHHHHHHh
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNND------------------NDNHLIHFDMGNYTELESIKHFFDSLAALVKK 299 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------~~~~li~id~s~~~~~~~~s~liG~lt~al~~ 299 (550)
|.++||+||+|+|||++|+.+++.+..... ....+..++...- ...+. -+-.+.+.+..
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~--~~~~~-~i~~i~~~~~~ 90 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ--SIKVD-QVRELVEFLSR 90 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC--cCCHH-HHHHHHHHHcc
Confidence 378999999999999999999999976200 0011222221110 00110 11123444443
Q ss_pred ----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhc
Q 036633 300 ----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTG 375 (550)
Q Consensus 300 ----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~ 375 (550)
.++.||+|||+++++++.++.|+..+++. . .++++|+++|..
T Consensus 91 ~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~--~-----------~~~~~il~~~~~--------------------- 136 (188)
T TIGR00678 91 TPQESGRRVVIIEDAERMNEAAANALLKTLEEP--P-----------PNTLFILITPSP--------------------- 136 (188)
T ss_pred CcccCCeEEEEEechhhhCHHHHHHHHHHhcCC--C-----------CCeEEEEEECCh---------------------
Confidence 34569999999999999999999999887 5 567788877632
Q ss_pred cCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcC
Q 036633 376 SLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNA 440 (550)
Q Consensus 376 ~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~ 440 (550)
..+.+.+.+|+ .++.|. |++.+++..++... |+ ++++++.|+..+
T Consensus 137 ~~l~~~i~sr~-~~~~~~---~~~~~~~~~~l~~~-----------gi-----~~~~~~~i~~~~ 181 (188)
T TIGR00678 137 EKLLPTIRSRC-QVLPFP---PLSEEALLQWLIRQ-----------GI-----SEEAAELLLALA 181 (188)
T ss_pred HhChHHHHhhc-EEeeCC---CCCHHHHHHHHHHc-----------CC-----CHHHHHHHHHHc
Confidence 24567899999 799999 99999987776543 34 788899988754
No 146
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.43 E-value=3.4e-13 Score=122.43 Aligned_cols=131 Identities=23% Similarity=0.320 Sum_probs=99.9
Q ss_pred cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhh
Q 036633 209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKH 288 (550)
Q Consensus 209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~ 288 (550)
||++.+++.+.+.+.+. . ....+++++|++||||+.+|+.|+..... ...+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~---a------~~~~pvli~GE~GtGK~~~A~~lh~~~~~---~~~~~~~~~~~~~~------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL---A------KSSSPVLITGEPGTGKSLLARALHRYSGR---ANGPFIVIDCASLP------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHH---H------CSSS-EEEECCTTSSHHHHHHCCHHTTTT---CCS-CCCCCHHCTC-------
T ss_pred CCCCHHHHHHHHHHHHH---h------CCCCcEEEEcCCCCCHHHHHHHHHhhcCc---cCCCeEEechhhCc-------
Confidence 69999999999999876 1 12268999999999999999999998877 77899999998865
Q ss_pred HHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHh
Q 036633 289 FFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYG 368 (550)
Q Consensus 289 liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~ 368 (550)
.+.+.....++++|+||+.++++.|..|++.++... . .++.+|+||..+......
T Consensus 62 -----~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~-~-----------~~~RlI~ss~~~l~~l~~-------- 116 (138)
T PF14532_consen 62 -----AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE-R-----------SNVRLIASSSQDLEELVE-------- 116 (138)
T ss_dssp -----HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT-T-----------TTSEEEEEECC-CCCHHH--------
T ss_pred -----HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC-C-----------CCeEEEEEeCCCHHHHhh--------
Confidence 122333467899999999999999999999998651 1 345689988877655433
Q ss_pred hHHHHhccCCChhhhhhccce
Q 036633 369 RVNEVTGSLFKPSLLKLLDKL 389 (550)
Q Consensus 369 ~~~~~l~~~f~p~ll~Rid~i 389 (550)
...|.++|+.|++..
T Consensus 117 ------~~~~~~~L~~~l~~~ 131 (138)
T PF14532_consen 117 ------EGRFSPDLYYRLSQL 131 (138)
T ss_dssp ------HSTHHHHHHHHCSTC
T ss_pred ------ccchhHHHHHHhCCC
Confidence 468899999999643
No 147
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=9.1e-13 Score=126.86 Aligned_cols=144 Identities=25% Similarity=0.395 Sum_probs=103.7
Q ss_pred CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
..|=|-+--++.|.+++...+- ..-|+- -|..+|++||||||||.||+++|..... .||++..|+|
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigid---pprgvllygppg~gktml~kava~~t~a------~firvvgsef 225 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGID---PPRGVLLYGPPGTGKTMLAKAVANHTTA------AFIRVVGSEF 225 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCC---CCcceEEeCCCCCcHHHHHHHHhhccch------heeeeccHHH
Confidence 4566777777777777765421 122332 2367899999999999999999988655 9999999998
Q ss_pred CchhhhhhHHh-------HHHHHHHhCCCCeEEeccccc-----------cCHHHHHHHHHhhhhccccccccC-CeEee
Q 036633 281 TELESIKHFFD-------SLAALVKKRPYSVVLFDKIEK-----------ANSSILNLLLKILKTDFNRKATRG-IAAFD 341 (550)
Q Consensus 281 ~~~~~~s~liG-------~lt~al~~~p~~VlllDEIek-----------a~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd 341 (550)
+.+.+| ..-...+.+..++||+|||+. ++.++|.+|+.++..= || ...
T Consensus 226 -----vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqm------dgfdq~-- 292 (408)
T KOG0727|consen 226 -----VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQM------DGFDQT-- 292 (408)
T ss_pred -----HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhc------cCcCcc--
Confidence 556666 222223344448999999984 4678999999988421 22 222
Q ss_pred cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEec
Q 036633 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVID 393 (550)
Q Consensus 342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~ 393 (550)
.|+-+||+||.. ..+.|+++ +|+|.-|.|+
T Consensus 293 -~nvkvimatnra---------------------dtldpallrpgrldrkiefp 324 (408)
T KOG0727|consen 293 -TNVKVIMATNRA---------------------DTLDPALLRPGRLDRKIEFP 324 (408)
T ss_pred -cceEEEEecCcc---------------------cccCHhhcCCccccccccCC
Confidence 355589999974 57788888 8999999997
No 148
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.43 E-value=2.4e-12 Score=139.92 Aligned_cols=232 Identities=15% Similarity=0.057 Sum_probs=134.3
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-------------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------------- 266 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------- 266 (550)
..|+||+.++..+..++... .+++|.||||+|||++|+.++..+....
T Consensus 192 ~dv~Gq~~~~~al~~aa~~g-------------~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~ 258 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAAGG-------------HNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLID 258 (499)
T ss_pred HHhcCcHHHHhhhhhhccCC-------------CEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcc
Confidence 56899999987655544322 5899999999999999999998765410
Q ss_pred ---CCCCceeEEecCCCCchhhhhhHHh----HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeE
Q 036633 267 ---DNDNHLIHFDMGNYTELESIKHFFD----SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339 (550)
Q Consensus 267 ---~~~~~li~id~s~~~~~~~~s~liG----~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~ 339 (550)
....||...+++.. ...++| .-.+.+....++|+||||++++++.+|+.|++.|++|.+. +...|..
T Consensus 259 ~~~~~~~Pf~~p~~s~s-----~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~-i~r~g~~ 332 (499)
T TIGR00368 259 RKQIKQRPFRSPHHSAS-----KPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSIS-ISRASAK 332 (499)
T ss_pred ccccccCCccccccccc-----hhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEE-EEecCcc
Confidence 00122222222211 122333 1122344456689999999999999999999999999433 3333322
Q ss_pred eec-CCeEEEEeCCCChHHHHHh---hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHH------------
Q 036633 340 FDL-TNTLIIMTSDLKDEQVYEV---MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTR------------ 403 (550)
Q Consensus 340 vd~-~~~iiI~TsN~g~~~~~~~---~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i------------ 403 (550)
+.+ .+..+|+++|......... .+.-+...+. .....+++.|++|||-++.+. +++.+++
T Consensus 333 ~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~-~y~~~is~pllDR~dl~~~~~---~~~~~~l~~~~~~e~s~~i 408 (499)
T TIGR00368 333 IFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQIS-RYWNKLSGPFLDRIDLSVEVP---LLPPEKLLSTGSGESSAEV 408 (499)
T ss_pred eeccCCeEEEEecCCcccCcCCCCcccccCCHHHHH-HHhhhccHhHHhhCCEEEEEc---CCCHHHHhccCCCCCHHHH
Confidence 223 5677999999742111100 0000111111 112467889999999998988 7765544
Q ss_pred HHHHHHHHHHHHHHhccC-CCc-c-----------ccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc-hhhHH
Q 036633 404 LLLREWACEETKRRNNDS-KAV-I-----------VCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ-RPSAD 462 (550)
Q Consensus 404 ~~I~~~~l~~~~~~l~~~-~~~-~-----------l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~-~~la~ 462 (550)
.+-+...-....+++... ++. + ..+++++.+.|..... ...++ |...+++.- ..+|+
T Consensus 409 r~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~--R~~~rilrvArTiAd 480 (499)
T TIGR00368 409 KQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSS--RATHRILKVARTIAD 480 (499)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHh
Confidence 222222222222333221 010 1 2456777776665322 33455 988888875 44444
No 149
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.43 E-value=1.9e-12 Score=132.45 Aligned_cols=112 Identities=14% Similarity=0.181 Sum_probs=76.0
Q ss_pred CeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhh
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSL 382 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~l 382 (550)
+|+|+||++-++.+.+..|-+++|.. - --+|||+||.|...+.... -..-..++.+|
T Consensus 280 GVLFIDEvHmLDiEcFsfLnralEs~--~------------sPiiIlATNRg~~~irGt~---------~~sphGiP~Dl 336 (398)
T PF06068_consen 280 GVLFIDEVHMLDIECFSFLNRALESE--L------------SPIIILATNRGITKIRGTD---------IISPHGIPLDL 336 (398)
T ss_dssp -EEEEESGGGSBHHHHHHHHHHHTST--T--------------EEEEEES-SEEE-BTTS----------EEETT--HHH
T ss_pred ceEEecchhhccHHHHHHHHHHhcCC--C------------CcEEEEecCceeeeccCcc---------CcCCCCCCcch
Confidence 79999999999999999999999987 2 2469999999876553210 00012468899
Q ss_pred hhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 383 LKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 383 l~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++|+ -+|... |++.+++.+|+...+.. .+ +.+++++++.|.+-+. -..|+.+++-
T Consensus 337 LDRl-lII~t~---py~~~ei~~Il~iR~~~-------E~---v~i~~~al~~L~~ig~------~~SLRYAiqL 391 (398)
T PF06068_consen 337 LDRL-LIIRTK---PYSEEEIKQILKIRAKE-------ED---VEISEDALDLLTKIGV------ETSLRYAIQL 391 (398)
T ss_dssp HTTE-EEEEE-------HHHHHHHHHHHHHH-------CT-----B-HHHHHHHHHHHH------HS-HHHHHHC
T ss_pred Hhhc-EEEECC---CCCHHHHHHHHHhhhhh-------hc---CcCCHHHHHHHHHHhh------hccHHHHHHh
Confidence 9999 899999 99999999999988854 54 4899999999997543 1345566654
No 150
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2e-12 Score=131.36 Aligned_cols=191 Identities=19% Similarity=0.236 Sum_probs=125.0
Q ss_pred CcccCcHHHHHHHHHHHhcchh---hhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA---AKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~---~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
..|.|-.+|++-+-+++..... =..|+ .+| ..+|++||||||||.||+++|..+.. .|+-+..|.+
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi---rrPWkgvLm~GPPGTGKTlLAKAvATEc~t------TFFNVSsstl- 281 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGI---RRPWKGVLMVGPPGTGKTLLAKAVATECGT------TFFNVSSSTL- 281 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhc---ccccceeeeeCCCCCcHHHHHHHHHHhhcC------eEEEechhhh-
Confidence 4589999999988888865411 02333 478 89999999999999999999998865 6665554444
Q ss_pred chhhhhhHHh-------HHHHHHHhCCCCeEEeccccc------------cCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 282 ELESIKHFFD-------SLAALVKKRPYSVVLFDKIEK------------ANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 282 ~~~~~s~liG-------~lt~al~~~p~~VlllDEIek------------a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
+|++-| .|-+..+.+.-++|||||||. ++..+-+-||..+|.-+ ...+-
T Consensus 282 ----tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~--------~t~e~ 349 (491)
T KOG0738|consen 282 ----TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ--------GTLEN 349 (491)
T ss_pred ----hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc--------ccccc
Confidence 455555 445555555559999999974 45578888888886431 11122
Q ss_pred CC-eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633 343 TN-TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS 421 (550)
Q Consensus 343 ~~-~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~ 421 (550)
+. +.++++||++= -++.+|+.|+..-|..+ -.+.+....+++..|..
T Consensus 350 ~k~VmVLAATN~PW---------------------diDEAlrRRlEKRIyIP---LP~~~~R~~Li~~~l~~-------- 397 (491)
T KOG0738|consen 350 SKVVMVLAATNFPW---------------------DIDEALRRRLEKRIYIP---LPDAEARSALIKILLRS-------- 397 (491)
T ss_pred ceeEEEEeccCCCc---------------------chHHHHHHHHhhheeee---CCCHHHHHHHHHHhhcc--------
Confidence 22 55667778752 35678899996666655 44667777777766632
Q ss_pred CCccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 422 KAVIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 422 ~~~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+..++++ ++.|++..- |.+|-++.+++..
T Consensus 398 ----~~~~~~~~~~~lae~~e---GySGaDI~nvCre 427 (491)
T KOG0738|consen 398 ----VELDDPVNLEDLAERSE---GYSGADITNVCRE 427 (491)
T ss_pred ----ccCCCCccHHHHHHHhc---CCChHHHHHHHHH
Confidence 2333333 566665322 2233677777766
No 151
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.41 E-value=2.9e-12 Score=132.40 Aligned_cols=143 Identities=23% Similarity=0.329 Sum_probs=107.7
Q ss_pred cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------C
Q 036633 207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------N 268 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------~ 268 (550)
.++|+++++..+....... .+.|..+||+||||+|||++|.++|+.+++.+. .
T Consensus 2 ~~~~~~~~~~~l~~~~~~~---------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~ 72 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES---------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGN 72 (325)
T ss_pred CcccchhHHHHHHHHHHhc---------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcC
Confidence 5788999998888888755 123457999999999999999999999996220 1
Q ss_pred CCceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCC
Q 036633 269 DNHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTN 344 (550)
Q Consensus 269 ~~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~ 344 (550)
...++.++-+......-.-..+..+.+.... .++.||++||+|.++++.++.|+..+++. . .+
T Consensus 73 ~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep--~-----------~~ 139 (325)
T COG0470 73 HPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP--P-----------KN 139 (325)
T ss_pred CCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC--C-----------CC
Confidence 2467777776655432122223344443333 35679999999999999999999999988 6 78
Q ss_pred eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633 345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID 393 (550)
Q Consensus 345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~ 393 (550)
+.||++||.. ..+.|.+.+|| .++.|.
T Consensus 140 ~~~il~~n~~---------------------~~il~tI~SRc-~~i~f~ 166 (325)
T COG0470 140 TRFILITNDP---------------------SKILPTIRSRC-QRIRFK 166 (325)
T ss_pred eEEEEEcCCh---------------------hhccchhhhcc-eeeecC
Confidence 8999999943 34556799999 899999
No 152
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.41 E-value=3.7e-12 Score=138.06 Aligned_cols=169 Identities=18% Similarity=0.206 Sum_probs=117.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHH----hHHHHHHHhCCCCeEEeccccccC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFF----DSLAALVKKRPYSVVLFDKIEKAN 314 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~li----G~lt~al~~~p~~VlllDEIeka~ 314 (550)
.+++|+||||+|||+|++++++.+...+ ....++.+++.++..... ..+. ..+.+.++ ...+|+||||+...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~ 224 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTSEKFTNDFV-NALRNNTMEEFKEKYR--SVDVLLIDDIQFLA 224 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHHHHH-HHHHcCcHHHHHHHHh--cCCEEEEehhhhhc
Confidence 6799999999999999999999986510 134577888877642211 1110 13333333 34699999999764
Q ss_pred --HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--cee
Q 036633 315 --SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLV 390 (550)
Q Consensus 315 --~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii 390 (550)
+..+..|+.+++.- . .. +..+|+|||.....+ ..+.|.+.+|+. .++
T Consensus 225 ~~~~~~~~l~~~~n~l--~--~~--------~~~iiits~~~p~~l-----------------~~l~~~l~SRl~~gl~v 275 (450)
T PRK00149 225 GKERTQEEFFHTFNAL--H--EA--------GKQIVLTSDRPPKEL-----------------PGLEERLRSRFEWGLTV 275 (450)
T ss_pred CCHHHHHHHHHHHHHH--H--HC--------CCcEEEECCCCHHHH-----------------HHHHHHHHhHhcCCeeE
Confidence 34566777766533 1 11 112677888765443 236678999995 378
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 391 VIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 391 ~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.|. |++.+++..|+...+.. .++ .++++++++|+.+.- | |+|.|..++.+
T Consensus 276 ~i~---~pd~~~r~~il~~~~~~-------~~~---~l~~e~l~~ia~~~~---~-~~R~l~~~l~~ 325 (450)
T PRK00149 276 DIE---PPDLETRIAILKKKAEE-------EGI---DLPDEVLEFIAKNIT---S-NVRELEGALNR 325 (450)
T ss_pred Eec---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHcCcC---C-CHHHHHHHHHH
Confidence 999 99999999999987753 344 899999999998643 5 78999888876
No 153
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.40 E-value=3.8e-12 Score=124.67 Aligned_cols=196 Identities=16% Similarity=0.187 Sum_probs=122.3
Q ss_pred hcCcccCcH-HHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 204 LKKRVFGQN-DAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 204 L~~~viGQ~-~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
+...|+|.. +..-..+..+... +... .+++++||+|+|||.|.+++++.+.... ....++.+++.+|.
T Consensus 7 Fdnfv~g~~N~~a~~~~~~ia~~---------~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~~~~f~ 76 (219)
T PF00308_consen 7 FDNFVVGESNELAYAAAKAIAEN---------PGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLSAEEFI 76 (219)
T ss_dssp CCCS--TTTTHHHHHHHHHHHHS---------TTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEEHHHHH
T ss_pred cccCCcCCcHHHHHHHHHHHHhc---------CCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeecHHHHH
Confidence 456677852 2223334444332 2223 5789999999999999999998875311 24467888877765
Q ss_pred chhhhhhHHh---HHHHHHHhCCCCeEEeccccccCH--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChH
Q 036633 282 ELESIKHFFD---SLAALVKKRPYSVVLFDKIEKANS--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDE 356 (550)
Q Consensus 282 ~~~~~s~liG---~lt~al~~~p~~VlllDEIeka~~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~ 356 (550)
.....+.--+ .+.+.+ ....+|+||+++.... ..+..|+.+++.- . . ++..+|+||+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~--~---~-------~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 77 REFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGKQRTQEELFHLFNRL--I---E-------SGKQLILTSDRPPS 142 (219)
T ss_dssp HHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTHHHHHHHHHHHHHHH--H---H-------TTSEEEEEESS-TT
T ss_pred HHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCchHHHHHHHHHHHHH--H---h-------hCCeEEEEeCCCCc
Confidence 3322111001 222222 3567999999998864 4588888888643 2 1 12236788876543
Q ss_pred HHHHhhhhhhHhhHHHHhccCCChhhhhhccc--eeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHH
Q 036633 357 QVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK--LVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALV 434 (550)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~--ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~ 434 (550)
.+ ..+.|.+.+|+.. ++.+. |++.++...|+...... +|+ .+++++++
T Consensus 143 ~l-----------------~~~~~~L~SRl~~Gl~~~l~---~pd~~~r~~il~~~a~~-------~~~---~l~~~v~~ 192 (219)
T PF00308_consen 143 EL-----------------SGLLPDLRSRLSWGLVVELQ---PPDDEDRRRILQKKAKE-------RGI---ELPEEVIE 192 (219)
T ss_dssp TT-----------------TTS-HHHHHHHHCSEEEEE-------HHHHHHHHHHHHHH-------TT-----S-HHHHH
T ss_pred cc-----------------cccChhhhhhHhhcchhhcC---CCCHHHHHHHHHHHHHH-------hCC---CCcHHHHH
Confidence 32 3578999999976 66667 89999999999887754 665 79999999
Q ss_pred HHHhcCcccCCCcccHHHHHHcc
Q 036633 435 HIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 435 ~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+|+...- + |+|.|..++++
T Consensus 193 ~l~~~~~---~-~~r~L~~~l~~ 211 (219)
T PF00308_consen 193 YLARRFR---R-DVRELEGALNR 211 (219)
T ss_dssp HHHHHTT---S-SHHHHHHHHHH
T ss_pred HHHHhhc---C-CHHHHHHHHHH
Confidence 9998532 3 77999999886
No 154
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=6.9e-12 Score=135.11 Aligned_cols=197 Identities=16% Similarity=0.184 Sum_probs=125.6
Q ss_pred hhcCcccCcHHHHH-HHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 203 RLKKRVFGQNDAID-VIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 203 ~L~~~viGQ~~ai~-~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
.+...|+|...... ..+..+.. .|..+.+++|+||||+|||+|++++++.+.... ....++.++++++.
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~---------~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~~~~v~yi~~~~f~ 172 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAK---------NPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKFL 172 (440)
T ss_pred cccccccCCchHHHHHHHHHHHh---------CcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHH
Confidence 45667888665432 11111211 122235799999999999999999999875411 13367777876653
Q ss_pred chhhhhhHH-h---HHHHHHHhCCCCeEEeccccccC--HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCCh
Q 036633 282 ELESIKHFF-D---SLAALVKKRPYSVVLFDKIEKAN--SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKD 355 (550)
Q Consensus 282 ~~~~~s~li-G---~lt~al~~~p~~VlllDEIeka~--~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~ 355 (550)
..... .+. + .+.+..+. ...+|+|||++... ...+..|+.++..- . + .+..+|+|||...
T Consensus 173 ~~~~~-~~~~~~~~~f~~~~~~-~~dvLlIDDi~~l~~~~~~q~elf~~~n~l--~---~-------~~k~iIitsd~~p 238 (440)
T PRK14088 173 NDLVD-SMKEGKLNEFREKYRK-KVDVLLIDDVQFLIGKTGVQTELFHTFNEL--H---D-------SGKQIVICSDREP 238 (440)
T ss_pred HHHHH-HHhcccHHHHHHHHHh-cCCEEEEechhhhcCcHHHHHHHHHHHHHH--H---H-------cCCeEEEECCCCH
Confidence 22111 110 1 23333332 34799999999763 34566666666432 1 1 1123777887655
Q ss_pred HHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHH
Q 036633 356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL 433 (550)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~ 433 (550)
..+ ..+.+.+.+|+. .++.+. |++.++...|+...+.. .++ .++++++
T Consensus 239 ~~l-----------------~~l~~rL~SR~~~gl~v~i~---~pd~e~r~~IL~~~~~~-------~~~---~l~~ev~ 288 (440)
T PRK14088 239 QKL-----------------SEFQDRLVSRFQMGLVAKLE---PPDEETRKKIARKMLEI-------EHG---ELPEEVL 288 (440)
T ss_pred HHH-----------------HHHHHHHhhHHhcCceEeeC---CCCHHHHHHHHHHHHHh-------cCC---CCCHHHH
Confidence 443 235567888883 378888 99999999998877642 444 7899999
Q ss_pred HHHHhcCcccCCCcccHHHHHHcc
Q 036633 434 VHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 434 ~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++|+.+.- | |+|.|..++.+
T Consensus 289 ~~Ia~~~~---~-~~R~L~g~l~~ 308 (440)
T PRK14088 289 NFVAENVD---D-NLRRLRGAIIK 308 (440)
T ss_pred HHHHhccc---c-CHHHHHHHHHH
Confidence 99998643 5 88999999987
No 155
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=2.4e-12 Score=133.73 Aligned_cols=152 Identities=18% Similarity=0.240 Sum_probs=106.9
Q ss_pred CcccC-cHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CC---------------
Q 036633 206 KRVFG-QNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DN--------------- 268 (550)
Q Consensus 206 ~~viG-Q~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~--------------- 268 (550)
..|+| |+.+++.+...+... + -|..+||+||+|+|||++|+.+|+.+.... ..
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~---~-------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~ 74 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKN---R-------LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDS 74 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcC---C-------CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhc
Confidence 45777 999999998888765 1 337899999999999999999999997621 00
Q ss_pred --CCceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 269 --DNHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 269 --~~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
...+..+.... ..-.+... -.+.+.+.. .++.|++|||+|+++.+.+|.||+.||+. .
T Consensus 75 ~~hpD~~~i~~~~--~~i~id~i-r~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP--p----------- 138 (329)
T PRK08058 75 GNHPDVHLVAPDG--QSIKKDQI-RYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP--S----------- 138 (329)
T ss_pred CCCCCEEEecccc--ccCCHHHH-HHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC--C-----------
Confidence 11122221100 00001000 033333333 34569999999999999999999999987 5
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE 408 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~ 408 (550)
.+++||++|+.. ..+.|.+.+|+ .++.|. |++.+++..++.
T Consensus 139 ~~~~~Il~t~~~---------------------~~ll~TIrSRc-~~i~~~---~~~~~~~~~~L~ 179 (329)
T PRK08058 139 GGTTAILLTENK---------------------HQILPTILSRC-QVVEFR---PLPPESLIQRLQ 179 (329)
T ss_pred CCceEEEEeCCh---------------------HhCcHHHHhhc-eeeeCC---CCCHHHHHHHHH
Confidence 677788887742 35667899999 899999 999998866654
No 156
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=8.2e-12 Score=120.20 Aligned_cols=188 Identities=21% Similarity=0.340 Sum_probs=126.4
Q ss_pred ccCcHHHHHHHHHHHhcc-----hhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633 208 VFGQNDAIDVIFEALTKP-----KAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE 282 (550)
Q Consensus 208 viGQ~~ai~~i~~~l~~~-----~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~ 282 (550)
|=|-+.-++.|.+.+... ++...|+. +|..+||+||||||||.+|+++|.+... .||++..|++
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIa---QPKGvlLygppgtGktLlaraVahht~c------~firvsgsel-- 217 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIA---QPKGVLLYGPPGTGKTLLARAVAHHTDC------TFIRVSGSEL-- 217 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCC---CCcceEEecCCCCchhHHHHHHHhhcce------EEEEechHHH--
Confidence 445566666666666443 01123443 5567899999999999999999988655 9999998876
Q ss_pred hhhhhhHHh-------HHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhh--hccccccccCCeEeec
Q 036633 283 LESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILK--TDFNRKATRGIAAFDL 342 (550)
Q Consensus 283 ~~~~s~liG-------~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld--~g~~~~l~d~g~~vd~ 342 (550)
+.++|| .|.-..|.+..++||.|||+.. +.++|...|.++. +| +. ..
T Consensus 218 ---vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg----fe------at 284 (404)
T KOG0728|consen 218 ---VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG----FE------AT 284 (404)
T ss_pred ---HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc----cc------cc
Confidence 667777 2222234444499999999865 4578888888874 23 11 12
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND 420 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~ 420 (550)
+|.-+||+||.- ..++|+++ +|||.-|.|+ |.+.+....|++.+-.+.+= .
T Consensus 285 knikvimatnri---------------------dild~allrpgridrkiefp---~p~e~ar~~ilkihsrkmnl---~ 337 (404)
T KOG0728|consen 285 KNIKVIMATNRI---------------------DILDPALLRPGRIDRKIEFP---PPNEEARLDILKIHSRKMNL---T 337 (404)
T ss_pred cceEEEEecccc---------------------ccccHhhcCCCcccccccCC---CCCHHHHHHHHHHhhhhhch---h
Confidence 566689999962 46778887 8999999999 88988888887655433111 1
Q ss_pred CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+|+ -++.+++.-. |++|-+++.++..
T Consensus 338 rgi--------~l~kiaekm~---gasgaevk~vcte 363 (404)
T KOG0728|consen 338 RGI--------NLRKIAEKMP---GASGAEVKGVCTE 363 (404)
T ss_pred ccc--------CHHHHHHhCC---CCccchhhhhhhh
Confidence 344 2355666432 4444567666654
No 157
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.38 E-value=1.5e-12 Score=127.76 Aligned_cols=220 Identities=17% Similarity=0.191 Sum_probs=156.4
Q ss_pred hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
.|+..|.-...+....++++.+. . + +. .++|+.||+|.||+.+|+.|.+.-..+-.-+.+|+.+||..+.
T Consensus 181 ~lksgiatrnp~fnrmieqierv---a--~----rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlr 251 (531)
T COG4650 181 FLKSGIATRNPHFNRMIEQIERV---A--I----RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLR 251 (531)
T ss_pred HHHhcccccChHHHHHHHHHHHH---H--h----hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeec
Confidence 35666777777777777777765 1 1 22 6899999999999999999865432111134499999999999
Q ss_pred chhhhhhHHh----HHHH-------HHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEe--ecCCeEE
Q 036633 282 ELESIKHFFD----SLAA-------LVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAF--DLTNTLI 347 (550)
Q Consensus 282 ~~~~~s~liG----~lt~-------al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~v--d~~~~ii 347 (550)
.....|.|+| .+|+ .++...++.+|||||..+..+-|..||+.+++. +++..+ .+.+ ||. +
T Consensus 252 gd~amsalfghvkgaftga~~~r~gllrsadggmlfldeigelgadeqamllkaieek--rf~pfgsdr~v~sdfq---l 326 (531)
T COG4650 252 GDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEK--RFYPFGSDRQVSSDFQ---L 326 (531)
T ss_pred CchHHHHHHhhhccccccchhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhh--ccCCCCCccccccchH---H
Confidence 9999999999 4443 345567789999999999999999999999998 756655 4433 444 3
Q ss_pred EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC--HHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633 348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL--DTTRLLLREWACEETKRRNNDSKAVI 425 (550)
Q Consensus 348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~--~e~i~~I~~~~l~~~~~~l~~~~~~~ 425 (550)
|..|-.+ .-.-.-+..|+.+++.|| +...|.+| .|. .++|+.-++..|.+.... .|- .
T Consensus 327 iagtvrd--------------lrq~vaeg~fredl~ari-nlwtf~lp-gl~qr~ediepnldyelerha~~---~g~-~ 386 (531)
T COG4650 327 IAGTVRD--------------LRQLVAEGKFREDLYARI-NLWTFTLP-GLRQRQEDIEPNLDYELERHASL---TGD-S 386 (531)
T ss_pred hhhhHHH--------------HHHHHhccchHHHHHHhh-heeeeecc-ccccCccccCCCccHHHHHHHHh---hCc-e
Confidence 3322221 112233578999999999 68888844 553 488888888888765543 566 7
Q ss_pred ccCCHHHHH-HHHhcCc---ccCCCcccHHHHHHcc
Q 036633 426 VCPSTSALV-HIASNAA---RKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 426 l~~~~~a~~-~L~~~~~---~~~GaN~R~L~~~i~~ 457 (550)
+.|..++.. ||+-.+. ...| |-|+|...+.+
T Consensus 387 vrfntearra~l~fa~spqa~w~g-nfrelsasvtr 421 (531)
T COG4650 387 VRFNTEARRAWLAFATSPQATWRG-NFRELSASVTR 421 (531)
T ss_pred eeeehHHHHHHHHhccCcchhhcc-cHHHHhHHHHH
Confidence 888888854 4442221 3356 88999888876
No 158
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.38 E-value=1.1e-11 Score=111.11 Aligned_cols=145 Identities=29% Similarity=0.387 Sum_probs=103.3
Q ss_pred cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhh
Q 036633 209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKH 288 (550)
Q Consensus 209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~ 288 (550)
+|++..+..+...+... .+.+++++||||||||++++.+++.+.. ...+++.++++.+........
T Consensus 1 ~~~~~~~~~i~~~~~~~-----------~~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~ 66 (151)
T cd00009 1 VGQEEAIEALREALELP-----------PPKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDLLEGLVVAE 66 (151)
T ss_pred CchHHHHHHHHHHHhCC-----------CCCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhhhhhhHHHH
Confidence 47788888877777643 2268999999999999999999999865 556899999988765544433
Q ss_pred HHhH-----HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhh
Q 036633 289 FFDS-----LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVML 363 (550)
Q Consensus 289 liG~-----lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~ 363 (550)
..+. ..........++|++||++.+.+.....+++.++.. . .. .....++.+|+++|....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~--~-~~----~~~~~~~~ii~~~~~~~~------- 132 (151)
T cd00009 67 LFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETL--N-DL----RIDRENVRVIGATNRPLL------- 132 (151)
T ss_pred HhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhc--C-ce----eccCCCeEEEEecCcccc-------
Confidence 3321 111122234589999999999888888999988876 3 10 012356778898886421
Q ss_pred hhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633 364 TATYGRVNEVTGSLFKPSLLKLLDKLVVID 393 (550)
Q Consensus 364 ~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~ 393 (550)
..+.+.+.+|++..+.|.
T Consensus 133 ------------~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 133 ------------GDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ------------CCcChhHHhhhccEeecC
Confidence 256788999998777765
No 159
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.38 E-value=1.4e-12 Score=115.02 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=67.0
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-----HHHHH--HHhCC--CCeEEeccc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-----SLAAL--VKKRP--YSVVLFDKI 310 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-----~lt~a--l~~~p--~~VlllDEI 310 (550)
++|+.|+||+|||++|+++|+.+.. .|.|+.+..- ..-+.++| .-... ++..| ..|+|+|||
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~------~f~RIq~tpd---llPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEi 71 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL------SFKRIQFTPD---LLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEI 71 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------EEEEE--TT-----HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC------ceeEEEecCC---CCcccceeeeeeccCCCeeEeecChhhhceeeeccc
Confidence 4799999999999999999999988 8999987521 23455566 00000 01111 269999999
Q ss_pred cccCHHHHHHHHHhhhhccccccccCCeEeecCC-eEEEEeCCC
Q 036633 311 EKANSSILNLLLKILKTDFNRKATRGIAAFDLTN-TLIIMTSDL 353 (550)
Q Consensus 311 eka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~-~iiI~TsN~ 353 (550)
..++|.+|+.||++++++ + ++..|..+.+.+ .+||+|-|.
T Consensus 72 NrappktQsAlLeam~Er--~-Vt~~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 72 NRAPPKTQSALLEAMEER--Q-VTIDGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp GGS-HHHHHHHHHHHHHS--E-EEETTEEEE--SS-EEEEEE-T
T ss_pred ccCCHHHHHHHHHHHHcC--e-EEeCCEEEECCCcEEEEEecCc
Confidence 999999999999999999 7 877788888877 556667785
No 160
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=1.5e-11 Score=132.78 Aligned_cols=202 Identities=13% Similarity=0.159 Sum_probs=133.7
Q ss_pred hhhcCcccCcHHHH-HHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 202 GRLKKRVFGQNDAI-DVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 202 ~~L~~~viGQ~~ai-~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
..+...++|-.... -..+..+.. .|..+ .+++|+||+|+|||+|++++++.+.... ....++.+++.+
T Consensus 112 ~tFdnFv~g~~n~~A~~aa~~~a~---------~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~~~~ 181 (450)
T PRK14087 112 NTFENFVIGSSNEQAFIAVQTVSK---------NPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMSGDE 181 (450)
T ss_pred cchhcccCCCcHHHHHHHHHHHHh---------CcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHH
Confidence 45677788875532 111222211 23334 6799999999999999999999775310 234667777766
Q ss_pred CCchhhhh--hHHhHHHHHHHh-CCCCeEEeccccccC--HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCC
Q 036633 280 YTELESIK--HFFDSLAALVKK-RPYSVVLFDKIEKAN--SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLK 354 (550)
Q Consensus 280 ~~~~~~~s--~liG~lt~al~~-~p~~VlllDEIeka~--~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g 354 (550)
+......+ ...+.+.+.... +...+|+||||+... +..++.|+.++..- . +. +..+|+|||..
T Consensus 182 f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~--~---~~-------~k~iIltsd~~ 249 (450)
T PRK14087 182 FARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNF--I---EN-------DKQLFFSSDKS 249 (450)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHH--H---Hc-------CCcEEEECCCC
Confidence 54322111 000112122111 234699999999876 67788888887643 2 11 12378999976
Q ss_pred hHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc--eeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHH
Q 036633 355 DEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK--LVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSA 432 (550)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~--ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a 432 (550)
...+ ..+.+.+.+|+.. ++.+. |++.+++..|+.+.+.. .|+ .+.+++++
T Consensus 250 P~~l-----------------~~l~~rL~SR~~~Gl~~~L~---~pd~e~r~~iL~~~~~~-------~gl-~~~l~~ev 301 (450)
T PRK14087 250 PELL-----------------NGFDNRLITRFNMGLSIAIQ---KLDNKTATAIIKKEIKN-------QNI-KQEVTEEA 301 (450)
T ss_pred HHHH-----------------hhccHHHHHHHhCCceeccC---CcCHHHHHHHHHHHHHh-------cCC-CCCCCHHH
Confidence 5443 4677889999953 67777 99999999999998854 354 55799999
Q ss_pred HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 433 LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 433 ~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+++|+..+- | |+|.|..++.+
T Consensus 302 l~~Ia~~~~---g-d~R~L~gaL~~ 322 (450)
T PRK14087 302 INFISNYYS---D-DVRKIKGSVSR 322 (450)
T ss_pred HHHHHHccC---C-CHHHHHHHHHH
Confidence 999998653 6 88999999986
No 161
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.37 E-value=9.1e-12 Score=128.58 Aligned_cols=203 Identities=17% Similarity=0.220 Sum_probs=132.1
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccC-CCCCCceeEEec----CC
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDN-NDNDNHLIHFDM----GN 279 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~-~~~~~~li~id~----s~ 279 (550)
...|+|+++++.+++..++.. ..|+.. +...++|+||||+|||++|++|++.+..- ...+.++..+.. |.
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~---a~g~~~--~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp 124 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSA---AQGLEE--RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESP 124 (361)
T ss_pred chhccCcHHHHHHHHHHHHHH---HhcCCC--CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCC
Confidence 447999999999999999987 555532 23689999999999999999999998552 224556766655 32
Q ss_pred CCchh------------------------------hhhhH---H-h----------------------------------
Q 036633 280 YTELE------------------------------SIKHF---F-D---------------------------------- 291 (550)
Q Consensus 280 ~~~~~------------------------------~~s~l---i-G---------------------------------- 291 (550)
+.+.. ....+ . |
T Consensus 125 ~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~ 204 (361)
T smart00763 125 MHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDIS 204 (361)
T ss_pred CccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHH
Confidence 22110 00011 0 1
Q ss_pred HHHH----------------------HHHhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-C-CeEeecCCeEE
Q 036633 292 SLAA----------------------LVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-G-IAAFDLTNTLI 347 (550)
Q Consensus 292 ~lt~----------------------al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~-g~~vd~~~~ii 347 (550)
.|++ .+.+...|++-|+|+.|++.++++.||.++++| . +.. + +..+.+. .+|
T Consensus 205 ~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~--~-v~~~~~~~~~~~d-~li 280 (361)
T smart00763 205 ELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEG--N-IKGTGGFAMIPID-GLI 280 (361)
T ss_pred HHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcc--e-EecCCcccccccc-eEE
Confidence 2222 122222379999999999999999999999999 6 543 3 3344444 488
Q ss_pred EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 036633 348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVC 427 (550)
Q Consensus 348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~ 427 (550)
|+|||... ..........++|+.||. +|.+. -+++-++=.+|.++.+.. ..-. ...
T Consensus 281 ia~sNe~e--------------~~~~~~~k~~eaf~dR~~-~i~vp--Y~l~~~~E~~Iy~k~~~~------s~~~-~~~ 336 (361)
T smart00763 281 IAHSNESE--------------WQRFKSNKKNEALLDRII-KVKVP--YCLRVSEEAQIYEKLLRN------SDLT-EAH 336 (361)
T ss_pred EEeCCHHH--------------HhhhhccccchhhhhceE-EEeCC--CcCCHHHHHHHHHHHhcc------CcCc-ccc
Confidence 99999521 111112234688999995 55543 145667777777776642 1112 457
Q ss_pred CCHHHHHHHHhcC
Q 036633 428 PSTSALVHIASNA 440 (550)
Q Consensus 428 ~~~~a~~~L~~~~ 440 (550)
+.|.+++.++..+
T Consensus 337 ~aP~~le~aa~~a 349 (361)
T smart00763 337 IAPHTLEMAALFS 349 (361)
T ss_pred cCchHHHHHHHHH
Confidence 7888888777643
No 162
>PRK04132 replication factor C small subunit; Provisional
Probab=99.36 E-value=6.5e-12 Score=142.63 Aligned_cols=166 Identities=14% Similarity=0.195 Sum_probs=124.6
Q ss_pred eeEEEec--cCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHH--HHhCCCCeEEeccccccC
Q 036633 239 GLFLFAG--PNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAAL--VKKRPYSVVLFDKIEKAN 314 (550)
Q Consensus 239 ~~lLf~G--p~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~a--l~~~p~~VlllDEIeka~ 314 (550)
-.-+..| |+|.|||++|.+||+.+|+.+ ...+++.+|.|+......+...+..+... +...++.|++|||+|.++
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~-~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt 643 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGEN-WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT 643 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhccc-ccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC
Confidence 3445678 999999999999999998721 24579999999876555555444432211 111235699999999999
Q ss_pred HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecC
Q 036633 315 SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDL 394 (550)
Q Consensus 315 ~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~ 394 (550)
++.|+.|++.+++. . .++.||++||.. ..+.|.+.||| .++.|.
T Consensus 644 ~~AQnALLk~lEep--~-----------~~~~FILi~N~~---------------------~kIi~tIrSRC-~~i~F~- 687 (846)
T PRK04132 644 QDAQQALRRTMEMF--S-----------SNVRFILSCNYS---------------------SKIIEPIQSRC-AIFRFR- 687 (846)
T ss_pred HHHHHHHHHHhhCC--C-----------CCeEEEEEeCCh---------------------hhCchHHhhhc-eEEeCC-
Confidence 99999999999976 4 567799999864 24557799999 899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 395 AVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 395 ~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
|++.+++...+...+.+ .|+ .++++++..|+..+. | +.|..-+.++.
T Consensus 688 --~ls~~~i~~~L~~I~~~-------Egi---~i~~e~L~~Ia~~s~---G-DlR~AIn~Lq~ 734 (846)
T PRK04132 688 --PLRDEDIAKRLRYIAEN-------EGL---ELTEEGLQAILYIAE---G-DMRRAINILQA 734 (846)
T ss_pred --CCCHHHHHHHHHHHHHh-------cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 99999999888776642 445 689999999998654 5 55655555553
No 163
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.36 E-value=8.1e-12 Score=127.63 Aligned_cols=147 Identities=9% Similarity=0.091 Sum_probs=103.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------------HHHHHHHhC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------------SLAALVKKR 300 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------------~lt~al~~~ 300 (550)
.+++|.||||||||++|+.+|+.+.. ++++++|+.-.... .++| .|+.+.+.
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~------~~~rV~~~~~l~~~---DliG~~~~~l~~g~~~~~f~~GpL~~A~~~- 134 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNW------PCVRVNLDSHVSRI---DLVGKDAIVLKDGKQITEFRDGILPWALQH- 134 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCC------CeEEEEecCCCChh---hcCCCceeeccCCcceeEEecCcchhHHhC-
Confidence 47999999999999999999999988 99999998765442 2344 23333332
Q ss_pred CCCeEEeccccccCHHHHHHHHHhhhh-ccccccccCCeEeecC-CeEEEEeCCCCh-HHHHHhhhhhhHhhHHHHhccC
Q 036633 301 PYSVVLFDKIEKANSSILNLLLKILKT-DFNRKATRGIAAFDLT-NTLIIMTSDLKD-EQVYEVMLTATYGRVNEVTGSL 377 (550)
Q Consensus 301 p~~VlllDEIeka~~~v~~~Ll~~ld~-g~~~~l~d~g~~vd~~-~~iiI~TsN~g~-~~~~~~~~~~~~~~~~~~l~~~ 377 (550)
+.+++||||+.++|++++.|..+||. |++. +.+.++.+.-. +..+|+|.|.-. ..-... |.. ...
T Consensus 135 -g~illlDEin~a~p~~~~~L~~lLE~~~~l~-i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~-----y~G-----t~~ 202 (327)
T TIGR01650 135 -NVALCFDEYDAGRPDVMFVIQRVLEAGGKLT-LLDQNRVIRAHPAFRLFATANTIGLGDTTGL-----YHG-----TQQ 202 (327)
T ss_pred -CeEEEechhhccCHHHHHHHHHHhccCCeEE-ECCCceEecCCCCeEEEEeeCCCCcCCCCcc-----eee-----eec
Confidence 35799999999999999999999994 5222 22226777444 566999999621 000000 000 134
Q ss_pred CChhhhhhccceeEecCCCCCCHHHHHHHHHHH
Q 036633 378 FKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWA 410 (550)
Q Consensus 378 f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~ 410 (550)
+++++++|+-.++.+. -++.++-..|+...
T Consensus 203 l~~A~lDRF~i~~~~~---Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 203 INQAQMDRWSIVTTLN---YLEHDNEAAIVLAK 232 (327)
T ss_pred CCHHHHhheeeEeeCC---CCCHHHHHHHHHhh
Confidence 5899999994455788 78888888877654
No 164
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=99.36 E-value=2.9e-12 Score=112.67 Aligned_cols=108 Identities=19% Similarity=0.349 Sum_probs=83.1
Q ss_pred HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE
Q 036633 195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH 274 (550)
Q Consensus 195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~ 274 (550)
.++..|+..|.++++||.-|.+.|.+++... ... ..|++|.++.|+||||||||.+++.||+.+|..| ..++++.
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~---l~~-~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G-~~S~~V~ 88 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGH---LAN-PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSG-MKSPFVH 88 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHH---HcC-CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcc-cCCCcee
Confidence 3477899999999999999999999999987 333 4788999999999999999999999999999855 3445665
Q ss_pred EecCC--CCchhhh----hhHHhHHHHHHHhCCCCeEEe
Q 036633 275 FDMGN--YTELESI----KHFFDSLAALVKKRPYSVVLF 307 (550)
Q Consensus 275 id~s~--~~~~~~~----s~liG~lt~al~~~p~~Vlll 307 (550)
.=.+. |+....+ ..|-..+.+.+.++|.++++|
T Consensus 89 ~f~~~~hFP~~~~v~~Yk~~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 89 QFIATHHFPHNSNVDEYKEQLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred eecccccCCCchHHHHHHHHHHHHHHHHHHhCCcCeeeC
Confidence 43333 3222222 223337778888999988775
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.36 E-value=1.2e-11 Score=132.95 Aligned_cols=199 Identities=14% Similarity=0.199 Sum_probs=129.2
Q ss_pred hhcCcccCcHHHHH-HHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 203 RLKKRVFGQNDAID-VIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 203 ~L~~~viGQ~~ai~-~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
.+...|+|...... ..+..+... . + ..+..+ .+++|+||+|+|||+|+++++..+.. ....++.+++..+
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~---~-~-~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~~~~f 180 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKV---S-E-QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVRSELF 180 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhc---c-c-cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEeeHHHH
Confidence 46677888765542 333333322 0 0 012234 67999999999999999999998865 4456777776555
Q ss_pred CchhhhhhHH-hHHHHHHH--hCCCCeEEeccccccC--HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCCh
Q 036633 281 TELESIKHFF-DSLAALVK--KRPYSVVLFDKIEKAN--SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKD 355 (550)
Q Consensus 281 ~~~~~~s~li-G~lt~al~--~~p~~VlllDEIeka~--~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~ 355 (550)
.... .+.+- |.. +.++ -....||+||||+... +..+..|+.++..- . + .+..+|+|||...
T Consensus 181 ~~~~-~~~l~~~~~-~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l--~---~-------~~k~IIlts~~~p 246 (445)
T PRK12422 181 TEHL-VSAIRSGEM-QRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSL--H---T-------EGKLIVISSTCAP 246 (445)
T ss_pred HHHH-HHHHhcchH-HHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHH--H---H-------CCCcEEEecCCCH
Confidence 3211 11111 111 1111 1234699999999875 35677777776422 1 1 1123788888755
Q ss_pred HHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHH
Q 036633 356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL 433 (550)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~ 433 (550)
..+ ..+.+.+.+|+. .++.+. |++.+++..|+...+.. .|+ .++++++
T Consensus 247 ~~l-----------------~~l~~rL~SR~~~Gl~~~l~---~pd~e~r~~iL~~k~~~-------~~~---~l~~evl 296 (445)
T PRK12422 247 QDL-----------------KAMEERLISRFEWGIAIPLH---PLTKEGLRSFLERKAEA-------LSI---RIEETAL 296 (445)
T ss_pred HHH-----------------hhhHHHHHhhhcCCeEEecC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHH
Confidence 443 246788999995 577788 89999999999887743 444 8899999
Q ss_pred HHHHhcCcccCCCcccHHHHHHcc
Q 036633 434 VHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 434 ~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++|+...- | |+|.|...+++
T Consensus 297 ~~la~~~~---~-dir~L~g~l~~ 316 (445)
T PRK12422 297 DFLIEALS---S-NVKSLLHALTL 316 (445)
T ss_pred HHHHHhcC---C-CHHHHHHHHHH
Confidence 99998532 4 78999998886
No 166
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.6e-12 Score=136.37 Aligned_cols=213 Identities=15% Similarity=0.080 Sum_probs=123.5
Q ss_pred CCccCHHHHHHHHHHHhCC-CCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEe
Q 036633 166 KLAVDVEEIAEVASKLTGI-PASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFA 244 (550)
Q Consensus 166 ~~~v~~~~i~~v~~~~~gi-p~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~ 244 (550)
-.......+.+++....|. +...-...+...-......| ++|+||+.|+..+..+..-. .++||+
T Consensus 139 ~~v~~~~~l~ev~~~l~g~~~l~~~~~~~~~~~~~~~~D~-~DV~GQ~~AKrAleiAAAGg-------------HnLl~~ 204 (490)
T COG0606 139 LPVYGARYLEEVVNFLEGKLRLPIPIPSEVIESFSLAPDF-KDVKGQEQAKRALEIAAAGG-------------HNLLLV 204 (490)
T ss_pred CCccchhhHHHHHHHhcCCcCCCCCCccccccccccCcch-hhhcCcHHHHHHHHHHHhcC-------------CcEEEe
Confidence 4555666777777777663 21111111110000001112 57999999998876665543 599999
Q ss_pred ccCCCcHHHHHHHHHHHhccCCCCCCcee-----------------EEecCCCCchhh---hhhHHh----HHHHHHHhC
Q 036633 245 GPNCSGKAELAKAIANELYDNNDNDNHLI-----------------HFDMGNYTELES---IKHFFD----SLAALVKKR 300 (550)
Q Consensus 245 Gp~GvGKT~lAk~la~~l~~~~~~~~~li-----------------~id~s~~~~~~~---~s~liG----~lt~al~~~ 300 (550)
||||||||.+|+.+...|.... ...++ .....-|...|. ...|+| .....+...
T Consensus 205 GpPGtGKTmla~Rl~~lLPpls--~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLA 282 (490)
T COG0606 205 GPPGTGKTMLASRLPGLLPPLS--IPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLA 282 (490)
T ss_pred cCCCCchHHhhhhhcccCCCCC--hHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeee
Confidence 9999999999999987775421 00000 011122333332 234444 122222233
Q ss_pred CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEee-cCCeEEEEeCCCChHHHHHhhhhh---hHhhHHHHhcc
Q 036633 301 PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD-LTNTLIIMTSDLKDEQVYEVMLTA---TYGRVNEVTGS 376 (550)
Q Consensus 301 p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd-~~~~iiI~TsN~g~~~~~~~~~~~---~~~~~~~~l~~ 376 (550)
.++|+||||.-.....+++.|.+-||+|.+. +...+..|. ..+-.+|+++|............. ...... .-..
T Consensus 283 H~GVLFLDElpef~~~iLe~LR~PLE~g~i~-IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~-~Y~~ 360 (490)
T COG0606 283 HNGVLFLDELPEFKRSILEALREPLENGKII-ISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIK-RYLN 360 (490)
T ss_pred cCCEEEeeccchhhHHHHHHHhCccccCcEE-EEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHH-HHHH
Confidence 4589999999999999999999999999544 444444444 455668888887543322111000 011111 1123
Q ss_pred CCChhhhhhccceeEecCCCCCC
Q 036633 377 LFKPSLLKLLDKLVVIDLAVPLL 399 (550)
Q Consensus 377 ~f~p~ll~Rid~ii~f~~~~pL~ 399 (550)
..+..|+.|||..+... .++
T Consensus 361 klSgp~lDRiDl~vev~---~~~ 380 (490)
T COG0606 361 KLSGPFLDRIDLMVEVP---RLS 380 (490)
T ss_pred HhhHHHHhhhhheeccc---CCC
Confidence 45677999999998888 665
No 167
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.35 E-value=2.9e-11 Score=128.00 Aligned_cols=150 Identities=21% Similarity=0.342 Sum_probs=109.3
Q ss_pred cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh
Q 036633 207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI 286 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~ 286 (550)
.+++-++.++.+..++... .+++|+||||||||++|+.+|..+.+ +..+.+++|..+....+.
T Consensus 176 d~~i~e~~le~l~~~L~~~-------------~~iil~GppGtGKT~lA~~la~~l~~----~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK-------------KNIILQGPPGVGKTFVARRLAYLLTG----EKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred cccCCHHHHHHHHHHHhcC-------------CCEEEECCCCCCHHHHHHHHHHHhcC----CcccceeeEEeecccccH
Confidence 4788888888888887754 48999999999999999999999865 335677888888777777
Q ss_pred hhHHh-----------------HHHHHHHhCC--CCeEEeccccccCHH-HHHHHHHhhhhccccc-----c--c--cC-
Q 036633 287 KHFFD-----------------SLAALVKKRP--YSVVLFDKIEKANSS-ILNLLLKILKTDFNRK-----A--T--RG- 336 (550)
Q Consensus 287 s~liG-----------------~lt~al~~~p--~~VlllDEIeka~~~-v~~~Ll~~ld~g~~~~-----l--~--d~- 336 (550)
..+++ .+.......| ..||+||||+.++++ ++..+++++|.+ .+ + . ..
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~--~rg~~~~v~l~y~e~d 316 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHD--KRGENWSVPLTYSEND 316 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcccc--ccccccceeeeccccc
Confidence 77663 2233333333 479999999999975 689999999864 20 1 0 11
Q ss_pred C-eEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633 337 I-AAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID 393 (550)
Q Consensus 337 g-~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~ 393 (550)
+ .-.--.|..||.|.|.....+ ..++++|+.|+ ..|.+.
T Consensus 317 ~e~f~iP~Nl~IIgTMNt~Drs~-----------------~~lD~AlrRRF-~fi~i~ 356 (459)
T PRK11331 317 EERFYVPENVYIIGLMNTADRSL-----------------AVVDYALRRRF-SFIDIE 356 (459)
T ss_pred cccccCCCCeEEEEecCccccch-----------------hhccHHHHhhh-heEEec
Confidence 1 123347889999999754221 24789999999 688887
No 168
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=2.3e-11 Score=133.44 Aligned_cols=198 Identities=16% Similarity=0.128 Sum_probs=129.2
Q ss_pred hhhcCcccCcHHHHH-HHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 202 GRLKKRVFGQNDAID-VIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 202 ~~L~~~viGQ~~ai~-~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
-.+...|+|....+. ..+.++... +.+. ..++|+|++|+|||+|+.+|+..+... .....++.+++.+
T Consensus 285 ~TFDnFvvG~sN~~A~aaa~avae~---------~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~-~~g~~V~Yitaee 354 (617)
T PRK14086 285 YTFDTFVIGASNRFAHAAAVAVAEA---------PAKAYNPLFIYGESGLGKTHLLHAIGHYARRL-YPGTRVRYVSSEE 354 (617)
T ss_pred CCHhhhcCCCccHHHHHHHHHHHhC---------ccccCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHH
Confidence 356677888876432 122222221 1222 469999999999999999999987430 0134677888777
Q ss_pred CCchhhhhhHHh---HHHHHHHhCCCCeEEeccccccC--HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCC
Q 036633 280 YTELESIKHFFD---SLAALVKKRPYSVVLFDKIEKAN--SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLK 354 (550)
Q Consensus 280 ~~~~~~~s~liG---~lt~al~~~p~~VlllDEIeka~--~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g 354 (550)
|......+..-| .|.+.++ ...+|+||+|+... +..+..|+.+++.- . + ++.-||+|||..
T Consensus 355 f~~el~~al~~~~~~~f~~~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l--~---e-------~gk~IIITSd~~ 420 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRRYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTL--H---N-------ANKQIVLSSDRP 420 (617)
T ss_pred HHHHHHHHHHhccHHHHHHHhh--cCCEEEEehhccccCCHHHHHHHHHHHHHH--H---h-------cCCCEEEecCCC
Confidence 643322111111 2233333 24799999999874 34466667766543 2 1 112267899987
Q ss_pred hHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc--eeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHH
Q 036633 355 DEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK--LVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSA 432 (550)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~--ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a 432 (550)
...+ ..+.+.|.+|+.. ++.+. +++.+....|+...+.. .++ .+++++
T Consensus 421 P~eL-----------------~~l~~rL~SRf~~GLvv~I~---~PD~EtR~aIL~kka~~-------r~l---~l~~eV 470 (617)
T PRK14086 421 PKQL-----------------VTLEDRLRNRFEWGLITDVQ---PPELETRIAILRKKAVQ-------EQL---NAPPEV 470 (617)
T ss_pred hHhh-----------------hhccHHHHhhhhcCceEEcC---CCCHHHHHHHHHHHHHh-------cCC---CCCHHH
Confidence 6544 3567889999955 55666 89999999999877643 444 889999
Q ss_pred HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 433 LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 433 ~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++||+.+.- + |+|.|..+|.+
T Consensus 471 i~yLa~r~~---r-nvR~LegaL~r 491 (617)
T PRK14086 471 LEFIASRIS---R-NIRELEGALIR 491 (617)
T ss_pred HHHHHHhcc---C-CHHHHHHHHHH
Confidence 999998543 4 78999999987
No 169
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.35 E-value=2e-11 Score=128.66 Aligned_cols=208 Identities=14% Similarity=0.126 Sum_probs=130.3
Q ss_pred hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC---CCCceeEEecCC
Q 036633 203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND---NDNHLIHFDMGN 279 (550)
Q Consensus 203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~---~~~~li~id~s~ 279 (550)
...+.++|.+.-++.+...+... .. ...|++++++||||||||++++.+++.+..... ..-.++.+||..
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~---~~----~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPI---LR----GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHH---Hc----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 45568999999999999998865 22 235578999999999999999999988753100 013578899987
Q ss_pred CCchhhh-h----hH-----------------HhHHHHHHHh-CCCCeEEeccccccCHHHHHHHHHhhhh---cccccc
Q 036633 280 YTELESI-K----HF-----------------FDSLAALVKK-RPYSVVLFDKIEKANSSILNLLLKILKT---DFNRKA 333 (550)
Q Consensus 280 ~~~~~~~-s----~l-----------------iG~lt~al~~-~p~~VlllDEIeka~~~v~~~Ll~~ld~---g~~~~l 333 (550)
+.....+ . .+ +..+.+.+.. .+..||+|||++.+.......|..++.- . . .
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~--~-~ 161 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNG--D-L 161 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccccc--C-C
Confidence 6543221 1 11 1122233332 3345899999999953333344444422 2 1 1
Q ss_pred ccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc-ceeEecCCCCCCHHHHHHHHHHHHH
Q 036633 334 TRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD-KLVVIDLAVPLLDTTRLLLREWACE 412 (550)
Q Consensus 334 ~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid-~ii~f~~~~pL~~e~i~~I~~~~l~ 412 (550)
...++.+|+++|...- ...+.+.+.+|+. ..|.|. |++.+++..|+...+.
T Consensus 162 -------~~~~v~lI~i~n~~~~------------------~~~l~~~~~s~~~~~~i~f~---p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 162 -------DNAKVGVIGISNDLKF------------------RENLDPRVKSSLCEEEIIFP---PYDAEELRDILENRAE 213 (365)
T ss_pred -------CCCeEEEEEEECCcch------------------HhhcCHHHhccCCcceeeeC---CCCHHHHHHHHHHHHH
Confidence 1135667777775321 1234566667773 578999 9999999999998774
Q ss_pred HHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 413 ETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 413 ~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
. .+ . .-.++++++++++..+....| +.|..-.++..
T Consensus 214 ~---~~--~---~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~ 249 (365)
T TIGR02928 214 K---AF--Y---DGVLDDGVIPLCAALAAQEHG-DARKAIDLLRV 249 (365)
T ss_pred h---hc--c---CCCCChhHHHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 2 11 1 124789998888764432235 55655555554
No 170
>PRK06620 hypothetical protein; Validated
Probab=99.34 E-value=3e-11 Score=117.92 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=97.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCH-HH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANS-SI 317 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~-~v 317 (550)
.+++|+||||+|||++++++++.... .++. ...+. .+..+ ...++++|||+.... ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~------~~~~--~~~~~------------~~~~~--~~d~lliDdi~~~~~~~l 102 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA------YIIK--DIFFN------------EEILE--KYNAFIIEDIENWQEPAL 102 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC------EEcc--hhhhc------------hhHHh--cCCEEEEeccccchHHHH
Confidence 57999999999999999998876422 2211 11100 01111 237999999996542 33
Q ss_pred HHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc--eeEecCC
Q 036633 318 LNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK--LVVIDLA 395 (550)
Q Consensus 318 ~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~--ii~f~~~ 395 (550)
+..+-.+.+.| . .+++||+.....+ .+ |++.+|+.. ++.+.
T Consensus 103 f~l~N~~~e~g--~--------------~ilits~~~p~~l------------------~l-~~L~SRl~~gl~~~l~-- 145 (214)
T PRK06620 103 LHIFNIINEKQ--K--------------YLLLTSSDKSRNF------------------TL-PDLSSRIKSVLSILLN-- 145 (214)
T ss_pred HHHHHHHHhcC--C--------------EEEEEcCCCcccc------------------ch-HHHHHHHhCCceEeeC--
Confidence 33333334555 3 2566666443211 24 889999942 68888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 396 VPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 396 ~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
|++.+++..++.+.+.. .|+ .++++++++|+.+.- | ++|.+.+.++.
T Consensus 146 -~pd~~~~~~~l~k~~~~-------~~l---~l~~ev~~~L~~~~~---~-d~r~l~~~l~~ 192 (214)
T PRK06620 146 -SPDDELIKILIFKHFSI-------SSV---TISRQIIDFLLVNLP---R-EYSKIIEILEN 192 (214)
T ss_pred -CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHcc---C-CHHHHHHHHHH
Confidence 99999998888877643 444 899999999998653 4 67989888886
No 171
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2e-11 Score=135.32 Aligned_cols=160 Identities=24% Similarity=0.295 Sum_probs=112.5
Q ss_pred hcCcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 204 LKKRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 204 L~~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
.-+.|.|+++|+..|.+.+.=.++ .+.|.. -|.-+||+||||||||.|||++|-...- ||+.++.|+
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAK---iPkGvLL~GPPGTGKTLLAKAiAGEAgV------PF~svSGSE 379 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAK---IPKGVLLVGPPGTGKTLLAKAIAGEAGV------PFFSVSGSE 379 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCc---CcCceEEECCCCCcHHHHHHHHhcccCC------ceeeechHH
Confidence 346799999999888776642200 022332 3468899999999999999999988776 999999999
Q ss_pred CCchhhhhhHHh-------HHHHHHHhCCCCeEEeccccccC------------H---HHHHHHHHhhhhccccccccCC
Q 036633 280 YTELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKAN------------S---SILNLLLKILKTDFNRKATRGI 337 (550)
Q Consensus 280 ~~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka~------------~---~v~~~Ll~~ld~g~~~~l~d~g 337 (550)
|.+ .+.| .|....+.+..++||+|||+... . ..+|.||--+| | . .
T Consensus 380 FvE-----~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD-g--f-~---- 446 (774)
T KOG0731|consen 380 FVE-----MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD-G--F-E---- 446 (774)
T ss_pred HHH-----HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc-C--C-c----
Confidence 854 2333 33333344334899999998542 1 23444444443 3 1 1
Q ss_pred eEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633 338 AAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACE 412 (550)
Q Consensus 338 ~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~ 412 (550)
.. .++|++++||.. +.++|+|+ +|||..|... ..+......|.+.++.
T Consensus 447 --~~-~~vi~~a~tnr~---------------------d~ld~allrpGRfdr~i~i~---~p~~~~r~~i~~~h~~ 496 (774)
T KOG0731|consen 447 --TS-KGVIVLAATNRP---------------------DILDPALLRPGRFDRQIQID---LPDVKGRASILKVHLR 496 (774)
T ss_pred --CC-CcEEEEeccCCc---------------------cccCHHhcCCCccccceecc---CCchhhhHHHHHHHhh
Confidence 11 668899999974 46778887 9999999999 7777888888887774
No 172
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.5e-11 Score=125.56 Aligned_cols=185 Identities=16% Similarity=0.195 Sum_probs=112.3
Q ss_pred hcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc--hhhhhhHHhHHHHHHHh-CCCCe
Q 036633 229 KKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE--LESIKHFFDSLAALVKK-RPYSV 304 (550)
Q Consensus 229 ~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~--~~~~s~liG~lt~al~~-~p~~V 304 (550)
-+.-...+.| .+++|+||||||||..|+.||+..+- .+-.+..++... ...++.+- .+-+..++ +.+-+
T Consensus 374 TaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGl------DYA~mTGGDVAPlG~qaVTkiH-~lFDWakkS~rGLl 446 (630)
T KOG0742|consen 374 TANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGL------DYAIMTGGDVAPLGAQAVTKIH-KLFDWAKKSRRGLL 446 (630)
T ss_pred hcccccccchhhheeeeCCCCCCchHHHHHHHhhcCC------ceehhcCCCccccchHHHHHHH-HHHHHHhhcccceE
Confidence 3445556678 99999999999999999999998755 222222222211 11121111 33333333 44458
Q ss_pred EEeccccc---------cCH---HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHH
Q 036633 305 VLFDKIEK---------ANS---SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNE 372 (550)
Q Consensus 305 lllDEIek---------a~~---~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~ 372 (550)
|||||.|. ++. +.+|.|| +..| . --++.+++++||.+
T Consensus 447 lFIDEADAFLceRnktymSEaqRsaLNAlL--fRTG--d---------qSrdivLvlAtNrp------------------ 495 (630)
T KOG0742|consen 447 LFIDEADAFLCERNKTYMSEAQRSALNALL--FRTG--D---------QSRDIVLVLATNRP------------------ 495 (630)
T ss_pred EEehhhHHHHHHhchhhhcHHHHHHHHHHH--HHhc--c---------cccceEEEeccCCc------------------
Confidence 89999973 333 3445444 3334 1 11456788999985
Q ss_pred HhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC------------ccccCCHHHHHHHHhcC
Q 036633 373 VTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA------------VIVCPSTSALVHIASNA 440 (550)
Q Consensus 373 ~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~------------~~l~~~~~a~~~L~~~~ 440 (550)
..|+.+.-.|||++|.|+ -...++..+++..+|+++...-...+- ..+.+.......+++..
T Consensus 496 ---gdlDsAV~DRide~veFp---LPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~Ea 569 (630)
T KOG0742|consen 496 ---GDLDSAVNDRIDEVVEFP---LPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEA 569 (630)
T ss_pred ---cchhHHHHhhhhheeecC---CCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHH
Confidence 468888999999999999 678899999999999887632211110 13454443333333322
Q ss_pred c-ccCCCcccHHHHHHcc
Q 036633 441 A-RKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 441 ~-~~~GaN~R~L~~~i~~ 457 (550)
. ..-|.+||+|..++-.
T Consensus 570 AkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 570 AKKTEGFSGREIAKLVAS 587 (630)
T ss_pred HHhccCCcHHHHHHHHHH
Confidence 2 3335566877766654
No 173
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.32 E-value=2.8e-11 Score=134.63 Aligned_cols=186 Identities=17% Similarity=0.134 Sum_probs=121.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhH--HHHHH------------HhCCCCe
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS--LAALV------------KKRPYSV 304 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~--lt~al------------~~~p~~V 304 (550)
+.+||.|+||||||++|++|+..+.. ..+|+++.++. +...|+|. +...+ .+..++|
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~----~~pfv~i~~~~-----t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~Gv 87 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPP----IMPFVELPLGV-----TEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGV 87 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCc----CCCeEecCccc-----chhhcccchhhhhhhhcCcccCCCCCeeeCCCCc
Confidence 89999999999999999999998754 23799888532 23455662 22211 1234579
Q ss_pred EEeccccccCHHHHHHHHHhhhhccccccccCCeEee-cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh
Q 036633 305 VLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD-LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL 383 (550)
Q Consensus 305 lllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd-~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll 383 (550)
||+|||+.+++.+|+.|+++|++|+++ +...|.... -.++.+|+|+|.... ...|+++|+
T Consensus 88 L~lDEi~rl~~~~q~~Ll~al~~g~v~-i~r~G~~~~~p~~f~lIAt~np~e~------------------~g~L~~~Ll 148 (589)
T TIGR02031 88 LYVDMANLLDDGLSNRLLQALDEGVVI-VEREGISVVHPAKFALIATYDPAEG------------------GGGLPDHLL 148 (589)
T ss_pred EeccchhhCCHHHHHHHHHHHHcCCeE-EEECCCceeecCceEEEEecCCccc------------------cCCCCHHHH
Confidence 999999999999999999999999544 332232222 235668899986420 257999999
Q ss_pred hhccceeEecCCCCCCHHHHHHHHHHHHHHHH-----------H---HhccCCCccccCCHHHHHHHHhcCcccCCC-cc
Q 036633 384 KLLDKLVVIDLAVPLLDTTRLLLREWACEETK-----------R---RNNDSKAVIVCPSTSALVHIASNAARKYGQ-NG 448 (550)
Q Consensus 384 ~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~-----------~---~l~~~~~~~l~~~~~a~~~L~~~~~~~~Ga-N~ 448 (550)
+||+..|....++ +.++...|+...+..+. + ..++.-- .+.++++++++|+..+. .+|. ..
T Consensus 149 dRf~l~v~~~~~~--~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~-~V~i~~~~~~~l~~~~~-~~gv~s~ 224 (589)
T TIGR02031 149 DRLALHVSLEDVA--SQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLP-QVTISAEQVKELVLTAA-SLGISGH 224 (589)
T ss_pred HhccCeeecCCCC--CHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcC-CccCCHHHHHHHHHHHH-HcCCCCc
Confidence 9998766666222 33445666666542221 1 1112222 56899999999998765 2232 12
Q ss_pred cHHHHHHc
Q 036633 449 EGLKRWMD 456 (550)
Q Consensus 449 R~L~~~i~ 456 (550)
|..-.++.
T Consensus 225 Ra~i~~~r 232 (589)
T TIGR02031 225 RADLFAVR 232 (589)
T ss_pred cHHHHHHH
Confidence 55554444
No 174
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.32 E-value=2e-11 Score=138.60 Aligned_cols=173 Identities=13% Similarity=0.204 Sum_probs=120.3
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCc-------eeEEecC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNH-------LIHFDMG 278 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~-------li~id~s 278 (550)
..++|.+..+..+...+.+. ++.+.||+||||||||.+|+.+|..+.. ...| ++.++++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~-----------~~~n~LLvGppGvGKT~lae~la~~i~~---~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR-----------RKNNPLLVGESGVGKTAIAEGLAWRIVQ---GDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc-----------CCCCeEEECCCCCCHHHHHHHHHHHHHh---cCCCchhcCCeEEeccHH
Confidence 46999999999999988865 3457789999999999999999987644 2223 3333433
Q ss_pred CCCchhhhhhHHh-------HHHHHHHhCCCCeEEecccccc---------CHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 279 NYTELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA---------NSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 279 ~~~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka---------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
.+... ....| .+.+.+...+.+|||||||+.+ ..++.+.|..++..| .
T Consensus 252 ~llaG---~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g--~----------- 315 (758)
T PRK11034 252 SLLAG---TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--K----------- 315 (758)
T ss_pred HHhcc---cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC--C-----------
Confidence 22110 11223 2233344556689999999965 246777888888888 4
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccC--CChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSL--FKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND 420 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~--f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~ 420 (550)
..+|.+||... .+++ .+|+|.+|| +.|.+. +++.++...|+.....++...
T Consensus 316 --i~vIgATt~~E------------------~~~~~~~D~AL~rRF-q~I~v~---ePs~~~~~~IL~~~~~~ye~~--- 368 (758)
T PRK11034 316 --IRVIGSTTYQE------------------FSNIFEKDRALARRF-QKIDIT---EPSIEETVQIINGLKPKYEAH--- 368 (758)
T ss_pred --eEEEecCChHH------------------HHHHhhccHHHHhhC-cEEEeC---CCCHHHHHHHHHHHHHHhhhc---
Confidence 23788887531 1122 378999999 589999 999999999988766554432
Q ss_pred CCCccccCCHHHHHHHHh
Q 036633 421 SKAVIVCPSTSALVHIAS 438 (550)
Q Consensus 421 ~~~~~l~~~~~a~~~L~~ 438 (550)
+ .+.++++++...+.
T Consensus 369 h---~v~i~~~al~~a~~ 383 (758)
T PRK11034 369 H---DVRYTAKAVRAAVE 383 (758)
T ss_pred c---CCCcCHHHHHHHHH
Confidence 3 34888988877665
No 175
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.30 E-value=2.1e-11 Score=137.20 Aligned_cols=194 Identities=20% Similarity=0.232 Sum_probs=122.6
Q ss_pred cccCcHHHHHHHHHHHhcchh--hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 207 RVFGQNDAIDVIFEALTKPKA--AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~--~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
.+.|.+.++..+...+..... ....+ ...-|..++|+||||||||++|++++..+.. +|+.++++++.+..
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~-~~~~~~gill~G~~G~GKt~~~~~~a~~~~~------~f~~is~~~~~~~~ 225 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKL-GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV------PFFTISGSDFVEMF 225 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhc-CCCCCCcEEEECCCCCCHHHHHHHHHHHcCC------CEEEEehHHhHHhh
Confidence 567888888777665543200 00001 0123456999999999999999999999877 99999998875321
Q ss_pred h---hhhHHhHHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633 285 S---IKHFFDSLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLI 347 (550)
Q Consensus 285 ~---~s~liG~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii 347 (550)
. ...+...+..+ +..+.+||||||||.+.+ .+++.||..+| | +.. -..+++
T Consensus 226 ~g~~~~~~~~~f~~a-~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~md-g----~~~------~~~viv 293 (644)
T PRK10733 226 VGVGASRVRDMFEQA-KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD-G----FEG------NEGIIV 293 (644)
T ss_pred hcccHHHHHHHHHHH-HhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhh-c----ccC------CCCeeE
Confidence 1 11111123333 334448999999998732 24555665554 2 111 145789
Q ss_pred EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633 348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI 425 (550)
Q Consensus 348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~ 425 (550)
|+|||.. ..++|+++ +|+|..|.|. .++.++...|+..++.+ ..+ .
T Consensus 294 IaaTN~p---------------------~~lD~Al~RpgRfdr~i~v~---~Pd~~~R~~Il~~~~~~-------~~l-~ 341 (644)
T PRK10733 294 IAATNRP---------------------DVLDPALLRPGRFDRQVVVG---LPDVRGREQILKVHMRR-------VPL-A 341 (644)
T ss_pred EEecCCh---------------------hhcCHHHhCCcccceEEEcC---CCCHHHHHHHHHHHhhc-------CCC-C
Confidence 9999974 46678887 5999999999 88889999998887743 111 1
Q ss_pred ccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 426 VCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 426 l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
-.++ ...++... + |.++.+|.++++.
T Consensus 342 ~~~d---~~~la~~t-~--G~sgadl~~l~~e 367 (644)
T PRK10733 342 PDID---AAIIARGT-P--GFSGADLANLVNE 367 (644)
T ss_pred CcCC---HHHHHhhC-C--CCCHHHHHHHHHH
Confidence 1112 23344422 2 3355778887765
No 176
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.30 E-value=8.4e-11 Score=133.11 Aligned_cols=204 Identities=11% Similarity=0.022 Sum_probs=123.3
Q ss_pred HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhh--cC-CC------CcCCC-eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAK--KG-LS------SRRQL-GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~--~g-l~------~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+.+..|...+...|+|++.++..|.-++-..-.+. .| +. ..-|. .++||+|+||||||.+|+.+++...+
T Consensus 439 ~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR 518 (915)
T PTZ00111 439 MIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPR 518 (915)
T ss_pred HHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCc
Confidence 44567778888999999999988877664330000 00 00 01123 69999999999999999999997665
Q ss_pred CC-CCCCceeEEecCCCCchhhhhhHHhHH---HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEe
Q 036633 265 NN-DNDNHLIHFDMGNYTELESIKHFFDSL---AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340 (550)
Q Consensus 265 ~~-~~~~~li~id~s~~~~~~~~s~liG~l---t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~v 340 (550)
.. .+..++..++|........ ...|.. .+++-....++++|||++++++..|..|+++|+.+++. +.-.|-..
T Consensus 519 ~~ytsG~~~s~vgLTa~~~~~d--~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIs-I~KaGi~~ 595 (915)
T PTZ00111 519 SIYTSGKSSSSVGLTASIKFNE--SDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVT-IAKAGIVA 595 (915)
T ss_pred cccCCCCCCccccccchhhhcc--cccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEE-EecCCcce
Confidence 11 1225667777665421000 001211 12233345689999999999999999999999999322 22223222
Q ss_pred e-cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633 341 D-LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 341 d-~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l 411 (550)
. -.++.||+|+|.-....... ..+.+ .-.|+|.+++|||-++... .+++.+.=..|+.+.+
T Consensus 596 tL~ar~rVIAAaNP~~gryd~~------~s~~e--ni~Lp~~LLSRFDLIf~l~--D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 596 TLKAETAILASCNPINSRYNKN------KAVIE--NINISPSLFTRFDLIYLVL--DHIDQDTDQLISLSIA 657 (915)
T ss_pred ecCCCeEEEEEcCCcccccCcc------cCccc--ccCCChHHhhhhcEEEEec--CCCChHHHHHHHHHHH
Confidence 2 24677999999742111100 00000 1247899999999776554 1455544444444433
No 177
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.29 E-value=5e-11 Score=132.72 Aligned_cols=191 Identities=15% Similarity=0.136 Sum_probs=130.7
Q ss_pred hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEec
Q 036633 203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDM 277 (550)
Q Consensus 203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~ 277 (550)
.....+.|.+.-++.|..+|... ..| ..| .+++++||||||||.+++.+.+.|-... ...-.++.+||
T Consensus 752 YVPD~LPhREeEIeeLasfL~pa---Ikg----sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESG---IKQ----SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHH---Hhc----CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 45678999999999999999876 222 245 5677999999999999999988774210 01124688999
Q ss_pred CCCCchhhhhh-----HHh--------------HHHHHHH--hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC
Q 036633 278 GNYTELESIKH-----FFD--------------SLAALVK--KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG 336 (550)
Q Consensus 278 s~~~~~~~~s~-----liG--------------~lt~al~--~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~ 336 (550)
..+.....+-. |.| .+...+. .....||+|||||.+....++.|+.+++.. . ...
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~--~-~s~- 900 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP--T-KIN- 900 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHh--h-ccC-
Confidence 87765544321 212 1111111 123358999999999887888999998754 2 211
Q ss_pred CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc-eeEecCCCCCCHHHHHHHHHHHHHHHH
Q 036633 337 IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK-LVVIDLAVPLLDTTRLLLREWACEETK 415 (550)
Q Consensus 337 g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~-ii~f~~~~pL~~e~i~~I~~~~l~~~~ 415 (550)
...+||+.||.-. +...+.|.+.+|+.. .|.|. ||+.+++..|+...+...
T Consensus 901 ------SKLiLIGISNdlD------------------LperLdPRLRSRLg~eeIvF~---PYTaEQL~dILk~RAe~A- 952 (1164)
T PTZ00112 901 ------SKLVLIAISNTMD------------------LPERLIPRCRSRLAFGRLVFS---PYKGDEIEKIIKERLENC- 952 (1164)
T ss_pred ------CeEEEEEecCchh------------------cchhhhhhhhhccccccccCC---CCCHHHHHHHHHHHHHhC-
Confidence 3466888887311 012345667787742 48899 999999999999888541
Q ss_pred HHhccCCCccccCCHHHHHHHHhcCc
Q 036633 416 RRNNDSKAVIVCPSTSALVHIASNAA 441 (550)
Q Consensus 416 ~~l~~~~~~~l~~~~~a~~~L~~~~~ 441 (550)
.+ .++++|++++++...
T Consensus 953 -----~g----VLdDdAIELIArkVA 969 (1164)
T PTZ00112 953 -----KE----IIDHTAIQLCARKVA 969 (1164)
T ss_pred -----CC----CCCHHHHHHHHHhhh
Confidence 12 489999999998554
No 178
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.29 E-value=3.5e-11 Score=139.22 Aligned_cols=180 Identities=14% Similarity=0.180 Sum_probs=123.7
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~ 281 (550)
..|+|.+..+.++...+.+. .+.+++|+||||||||.+|+.+|..+.... ....+++.+|++.+.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~-----------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR-----------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc-----------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh
Confidence 46999999999999998865 335779999999999999999999875310 123578889987543
Q ss_pred chhh----hhhHHhHHHHHHHhCCCCeEEeccccccC--------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEE
Q 036633 282 ELES----IKHFFDSLAALVKKRPYSVVLFDKIEKAN--------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIM 349 (550)
Q Consensus 282 ~~~~----~s~liG~lt~al~~~p~~VlllDEIeka~--------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~ 349 (550)
.... ...-+..+.+.+...+..||||||||.+. .++.+.|...+..| . + .+|.
T Consensus 248 ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~-l------------~~Ig 312 (821)
T CHL00095 248 AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--E-L------------QCIG 312 (821)
T ss_pred ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--C-c------------EEEE
Confidence 2111 01111123333344555799999998543 25788999999988 4 2 2677
Q ss_pred eCCCChHHHHHhhhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 036633 350 TSDLKDEQVYEVMLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVC 427 (550)
Q Consensus 350 TsN~g~~~~~~~~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~ 427 (550)
+||... .+++| .|.|..|+ +.|.+. +++.++...|+......+.+. .++ .
T Consensus 313 aTt~~e------------------y~~~ie~D~aL~rRf-~~I~v~---ep~~~e~~aILr~l~~~~e~~---~~v---~ 364 (821)
T CHL00095 313 ATTLDE------------------YRKHIEKDPALERRF-QPVYVG---EPSVEETIEILFGLRSRYEKH---HNL---S 364 (821)
T ss_pred eCCHHH------------------HHHHHhcCHHHHhcc-eEEecC---CCCHHHHHHHHHHHHHHHHHH---cCC---C
Confidence 776421 01222 68899999 678888 889888888887765554432 333 5
Q ss_pred CCHHHHHHHHhc
Q 036633 428 PSTSALVHIASN 439 (550)
Q Consensus 428 ~~~~a~~~L~~~ 439 (550)
++++++..++..
T Consensus 365 i~deal~~i~~l 376 (821)
T CHL00095 365 ISDKALEAAAKL 376 (821)
T ss_pred CCHHHHHHHHHH
Confidence 899998888764
No 179
>PRK09087 hypothetical protein; Validated
Probab=99.28 E-value=1.7e-10 Score=113.53 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=113.2
Q ss_pred hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
.+...|+|..... +...+... +..+ ..++|+||+|+|||+|++++++.... ..++...+.
T Consensus 19 ~~~~Fi~~~~N~~--a~~~l~~~---------~~~~~~~l~l~G~~GsGKThLl~~~~~~~~~--------~~i~~~~~~ 79 (226)
T PRK09087 19 GRDDLLVTESNRA--AVSLVDHW---------PNWPSPVVVLAGPVGSGKTHLASIWREKSDA--------LLIHPNEIG 79 (226)
T ss_pred ChhceeecCchHH--HHHHHHhc---------ccCCCCeEEEECCCCCCHHHHHHHHHHhcCC--------EEecHHHcc
Confidence 3556677664433 22244433 1123 46999999999999999999876422 234432221
Q ss_pred chhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633 282 ELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV 361 (550)
Q Consensus 282 ~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~ 361 (550)
. .+...+.. ++|+||+++.... .+..|+.++..- . + .+..+|+||+.....+
T Consensus 80 ~---------~~~~~~~~---~~l~iDDi~~~~~-~~~~lf~l~n~~--~---~-------~g~~ilits~~~p~~~--- 131 (226)
T PRK09087 80 S---------DAANAAAE---GPVLIEDIDAGGF-DETGLFHLINSV--R---Q-------AGTSLLMTSRLWPSSW--- 131 (226)
T ss_pred h---------HHHHhhhc---CeEEEECCCCCCC-CHHHHHHHHHHH--H---h-------CCCeEEEECCCChHHh---
Confidence 1 22222222 5899999987642 234455555321 1 1 1123778887655433
Q ss_pred hhhhhHhhHHHHhccCCChhhhhhcc--ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633 362 MLTATYGRVNEVTGSLFKPSLLKLLD--KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN 439 (550)
Q Consensus 362 ~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~ 439 (550)
..+.|++.+|+. .++.+. |++.+++..++.+.+.. .++ .++++++++|+.+
T Consensus 132 --------------~~~~~dL~SRl~~gl~~~l~---~pd~e~~~~iL~~~~~~-------~~~---~l~~ev~~~La~~ 184 (226)
T PRK09087 132 --------------NVKLPDLKSRLKAATVVEIG---EPDDALLSQVIFKLFAD-------RQL---YVDPHVVYYLVSR 184 (226)
T ss_pred --------------ccccccHHHHHhCCceeecC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHH
Confidence 345788999996 477888 99999999999988854 444 8999999999986
Q ss_pred CcccCCCcccHHHHHHcc
Q 036633 440 AARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 440 ~~~~~GaN~R~L~~~i~~ 457 (550)
.. | +.|.+..++++
T Consensus 185 ~~---r-~~~~l~~~l~~ 198 (226)
T PRK09087 185 ME---R-SLFAAQTIVDR 198 (226)
T ss_pred hh---h-hHHHHHHHHHH
Confidence 53 4 56777776665
No 180
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.5e-11 Score=118.57 Aligned_cols=178 Identities=17% Similarity=0.271 Sum_probs=117.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
..|-|-+.|++++.+++....-=-.-+...++| ..+||+|||||||++||+++|..... .|+.+.-|++
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS------TFFSvSSSDL---- 202 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS------TFFSVSSSDL---- 202 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC------ceEEeehHHH----
Confidence 457899999999999987651000112234578 89999999999999999999988644 7888876665
Q ss_pred hhhhHHh-------HHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633 285 SIKHFFD-------SLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTL 346 (550)
Q Consensus 285 ~~s~liG-------~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i 346 (550)
+|++.| .|-+..|.+.-+|||+|||+.+. ..+-.-||--++ | .-.|-..++
T Consensus 203 -vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq-G---------VG~d~~gvL 271 (439)
T KOG0739|consen 203 -VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ-G---------VGNDNDGVL 271 (439)
T ss_pred -HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh-c---------cccCCCceE
Confidence 677777 55666676666999999998653 234444443332 2 112335577
Q ss_pred EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH-HHHHHHHHHHHHHHHHHhccCCCcc
Q 036633 347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD-TTRLLLREWACEETKRRNNDSKAVI 425 (550)
Q Consensus 347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~-e~i~~I~~~~l~~~~~~l~~~~~~~ 425 (550)
++-+||++ -.++.+++.|++.-|..+ |.+ .....+.+..| -.. .
T Consensus 272 VLgATNiP---------------------w~LDsAIRRRFekRIYIP----LPe~~AR~~MF~lhl---------G~t-p 316 (439)
T KOG0739|consen 272 VLGATNIP---------------------WVLDSAIRRRFEKRIYIP----LPEAHARARMFKLHL---------GDT-P 316 (439)
T ss_pred EEecCCCc---------------------hhHHHHHHHHhhcceecc----CCcHHHhhhhheecc---------CCC-c
Confidence 88889985 245667888887666664 443 33333333333 122 4
Q ss_pred ccCCHHHHHHHHhc
Q 036633 426 VCPSTSALVHIASN 439 (550)
Q Consensus 426 l~~~~~a~~~L~~~ 439 (550)
..+++.-...|+..
T Consensus 317 ~~LT~~d~~eL~~k 330 (439)
T KOG0739|consen 317 HVLTEQDFKELARK 330 (439)
T ss_pred cccchhhHHHHHhh
Confidence 56777788888864
No 181
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.27 E-value=8.2e-11 Score=115.69 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=89.4
Q ss_pred CeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhc-cCCChh
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTG-SLFKPS 381 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~-~~f~p~ 381 (550)
+|+|+||++-++-+.+..|.+.++.. + --++||+||.|-..+.... ..+. -..+++
T Consensus 298 GVLFIDEVhMLDiEcFTyL~kalES~----i----------aPivifAsNrG~~~irGt~---------d~~sPhGip~d 354 (456)
T KOG1942|consen 298 GVLFIDEVHMLDIECFTYLHKALESP----I----------APIVIFASNRGMCTIRGTE---------DILSPHGIPPD 354 (456)
T ss_pred cceEeeehhhhhhHHHHHHHHHhcCC----C----------CceEEEecCCcceeecCCc---------CCCCCCCCCHH
Confidence 79999999999999999999999987 2 2368999999876653311 0111 236899
Q ss_pred hhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc-hhh
Q 036633 382 LLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ-RPS 460 (550)
Q Consensus 382 ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~-~~l 460 (550)
++.|+ .||... +++++++++|+...... . .+.+++++++.|+..+. -+.|+.+++- .|.
T Consensus 355 llDRl-~Iirt~---~y~~~e~r~Ii~~Ra~~-------E---~l~~~e~a~~~l~~~gt------~tsLRy~vqLl~p~ 414 (456)
T KOG1942|consen 355 LLDRL-LIIRTL---PYDEEEIRQIIKIRAQV-------E---GLQVEEEALDLLAEIGT------STSLRYAVQLLTPA 414 (456)
T ss_pred Hhhhe-eEEeec---cCCHHHHHHHHHHHHhh-------h---cceecHHHHHHHHhhcc------chhHHHHHHhcCHH
Confidence 99999 899999 99999999999876632 4 34889999999998543 2778888887 443
No 182
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.27 E-value=3.7e-11 Score=137.69 Aligned_cols=160 Identities=20% Similarity=0.249 Sum_probs=110.4
Q ss_pred cccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 207 RVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
.|.|.+.+++.+.+.+...+. ...|+. .|..+||+||||||||++|+++|..+.. +++.++++++.
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~---~~~giLL~GppGtGKT~laraia~~~~~------~~i~i~~~~i~ 249 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIE---PPKGVLLYGPPGTGKTLLAKAVANEAGA------YFISINGPEIM 249 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC---CCceEEEECCCCCChHHHHHHHHHHhCC------eEEEEecHHHh
Confidence 488999999999888754311 022331 2368999999999999999999999876 89999987654
Q ss_pred chhh---hhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633 282 ELES---IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLI 347 (550)
Q Consensus 282 ~~~~---~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii 347 (550)
.... ...+...+..+....| +|||||||+.+. ..+++.|+..++.- . . -.++++
T Consensus 250 ~~~~g~~~~~l~~lf~~a~~~~p-~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l--~---~------~~~viv 317 (733)
T TIGR01243 250 SKYYGESEERLREIFKEAEENAP-SIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL--K---G------RGRVIV 317 (733)
T ss_pred cccccHHHHHHHHHHHHHHhcCC-cEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc--c---c------CCCEEE
Confidence 3211 1111113333333444 899999998763 34677888888632 1 1 134667
Q ss_pred EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633 348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l 411 (550)
|.|||.. ..++|++. +|++..+.|. +++.++...|+....
T Consensus 318 I~atn~~---------------------~~ld~al~r~gRfd~~i~i~---~P~~~~R~~Il~~~~ 359 (733)
T TIGR01243 318 IGATNRP---------------------DALDPALRRPGRFDREIVIR---VPDKRARKEILKVHT 359 (733)
T ss_pred EeecCCh---------------------hhcCHHHhCchhccEEEEeC---CcCHHHHHHHHHHHh
Confidence 8788863 24567776 4899999999 778888888888544
No 183
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=4.9e-11 Score=123.50 Aligned_cols=129 Identities=21% Similarity=0.228 Sum_probs=93.9
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------CCCceeEEecCCCCchhhhhhHHh-----HHH
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNND------------------NDNHLIHFDMGNYTELESIKHFFD-----SLA 294 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------~~~~li~id~s~~~~~~~~s~liG-----~lt 294 (550)
|..+||+||+|+|||++|+.+|+.+...+. ++..+..+.-.+- +..++ .+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~------~~~i~id~iR~l~ 95 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA------DKTIKVDQVRELV 95 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC------CCCCCHHHHHHHH
Confidence 478999999999999999999999986210 0112222221100 01122 344
Q ss_pred HHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhH
Q 036633 295 ALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRV 370 (550)
Q Consensus 295 ~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~ 370 (550)
+.+.. .++.|++||++|+++.+.+|.||+.+|+. . .+++||++|+..
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP--p-----------~~~~fiL~t~~~---------------- 146 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP--S-----------GDTVLLLISHQP---------------- 146 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCC--C-----------CCeEEEEEECCh----------------
Confidence 44443 34679999999999999999999999987 5 567888888764
Q ss_pred HHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHH
Q 036633 371 NEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWA 410 (550)
Q Consensus 371 ~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~ 410 (550)
..+.|.++||| ..+.|. |++.+++...+...
T Consensus 147 -----~~ll~TI~SRc-~~~~~~---~~~~~~~~~~L~~~ 177 (328)
T PRK05707 147 -----SRLLPTIKSRC-QQQACP---LPSNEESLQWLQQA 177 (328)
T ss_pred -----hhCcHHHHhhc-eeeeCC---CcCHHHHHHHHHHh
Confidence 35678899999 789999 99999888776543
No 184
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.26 E-value=5.2e-11 Score=137.82 Aligned_cols=174 Identities=14% Similarity=0.186 Sum_probs=116.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~ 281 (550)
+.|+||++-+.+++..+.+. +..+.+|+||||||||++|+.||..+.... ....+++.+|++...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~-----------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ 246 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR-----------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV 246 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC-----------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh
Confidence 56999999999999888765 335889999999999999999999884310 123578888888754
Q ss_pred chhhhhhHHh-------HHHHHH-HhCCCCeEEeccccccCH--------HHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633 282 ELESIKHFFD-------SLAALV-KKRPYSVVLFDKIEKANS--------SILNLLLKILKTDFNRKATRGIAAFDLTNT 345 (550)
Q Consensus 282 ~~~~~s~liG-------~lt~al-~~~p~~VlllDEIeka~~--------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ 345 (550)
... ...| .+.+.+ +.....|||||||+.+.. +.++.|.+.+..| . +
T Consensus 247 ag~---~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--~-l------------ 308 (857)
T PRK10865 247 AGA---KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--E-L------------ 308 (857)
T ss_pred hcc---chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--C-C------------
Confidence 221 1222 122222 223447999999997753 5799999999999 4 2
Q ss_pred EEEEeCCCChHHHHHhhhhhhHhhHHHHhccC--CChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633 346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSL--FKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA 423 (550)
Q Consensus 346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~--f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~ 423 (550)
.+|.+|+...- +.+ .+++|.+||+. |.+. ..+.++...|+..... ++..+ .
T Consensus 309 ~~IgaTt~~e~------------------r~~~~~d~al~rRf~~-i~v~---eP~~~~~~~iL~~l~~----~~e~~-~ 361 (857)
T PRK10865 309 HCVGATTLDEY------------------RQYIEKDAALERRFQK-VFVA---EPSVEDTIAILRGLKE----RYELH-H 361 (857)
T ss_pred eEEEcCCCHHH------------------HHHhhhcHHHHhhCCE-EEeC---CCCHHHHHHHHHHHhh----hhccC-C
Confidence 37888876321 122 47899999964 4455 4477888877754332 33221 1
Q ss_pred ccccCCHHHHHHH
Q 036633 424 VIVCPSTSALVHI 436 (550)
Q Consensus 424 ~~l~~~~~a~~~L 436 (550)
.+.++++++...
T Consensus 362 -~v~~~d~a~~~a 373 (857)
T PRK10865 362 -HVQITDPAIVAA 373 (857)
T ss_pred -CCCcCHHHHHHH
Confidence 346677766554
No 185
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.5e-11 Score=120.82 Aligned_cols=137 Identities=25% Similarity=0.357 Sum_probs=100.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCC---CCCCceeEEecCCCCchhhhhhHHh-----------HHHHHHHhCCCC-
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNN---DNDNHLIHFDMGNYTELESIKHFFD-----------SLAALVKKRPYS- 303 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~---~~~~~li~id~s~~~~~~~~s~liG-----------~lt~al~~~p~~- 303 (550)
..+|++||||||||+|+++||+.|.-+. -....++.+|+..+ .|++|+ .+.+.+.. ++.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsL-----FSKWFsESgKlV~kmF~kI~ELv~d-~~~l 251 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSL-----FSKWFSESGKLVAKMFQKIQELVED-RGNL 251 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHH-----HHHHHhhhhhHHHHHHHHHHHHHhC-CCcE
Confidence 4789999999999999999999986431 12335666775432 455555 44444444 333
Q ss_pred -eEEeccccccCH---------------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhH
Q 036633 304 -VVLFDKIEKANS---------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATY 367 (550)
Q Consensus 304 -VlllDEIeka~~---------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~ 367 (550)
.|++||+|.+.. .|.|.||.-+|.= + ...|++|.+|||+.
T Consensus 252 VfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl--K---------~~~NvliL~TSNl~------------- 307 (423)
T KOG0744|consen 252 VFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL--K---------RYPNVLILATSNLT------------- 307 (423)
T ss_pred EEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh--c---------cCCCEEEEeccchH-------------
Confidence 467999986421 4889999999855 4 23789999999974
Q ss_pred hhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHH
Q 036633 368 GRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKR 416 (550)
Q Consensus 368 ~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~ 416 (550)
..++-+|+.|-|.+.... |.+.+.+..|++..+.++..
T Consensus 308 --------~siD~AfVDRADi~~yVG---~Pt~~ai~~IlkscieEL~~ 345 (423)
T KOG0744|consen 308 --------DSIDVAFVDRADIVFYVG---PPTAEAIYEILKSCIEELIS 345 (423)
T ss_pred --------HHHHHHhhhHhhheeecC---CccHHHHHHHHHHHHHHHHh
Confidence 456678999999777777 88999999999988876553
No 186
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=1.7e-10 Score=122.78 Aligned_cols=203 Identities=16% Similarity=0.119 Sum_probs=130.0
Q ss_pred hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633 204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL 283 (550)
Q Consensus 204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~ 283 (550)
....++|.+.-++.+...+... .. ..+|.+++++||||||||++++.+++.+...+ ..-.++.+||......
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~---~~----~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPA---LR----GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDRTR 99 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHH---hC----CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCCCH
Confidence 5678999999999999998765 22 23556789999999999999999999875411 1246888999876542
Q ss_pred hhh--------------------hhHHhHHHHHHHh-CCCCeEEeccccccC----HHHHHHHHHhhhhccccccccCCe
Q 036633 284 ESI--------------------KHFFDSLAALVKK-RPYSVVLFDKIEKAN----SSILNLLLKILKTDFNRKATRGIA 338 (550)
Q Consensus 284 ~~~--------------------s~liG~lt~al~~-~p~~VlllDEIeka~----~~v~~~Ll~~ld~g~~~~l~d~g~ 338 (550)
..+ ..++..+.+.+.. ....||+|||++.+. .+.+..|++.++.- . +
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~--~-----~- 171 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY--P-----G- 171 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc--C-----C-
Confidence 211 1111233334433 234689999999875 44555555555432 1 1
Q ss_pred EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc-ceeEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 036633 339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD-KLVVIDLAVPLLDTTRLLLREWACEETKRR 417 (550)
Q Consensus 339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid-~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~ 417 (550)
.++.+|+++|.... ...+.|.+.+|+. ..|.|. |++.+++..|+...+.. .
T Consensus 172 ----~~v~vI~i~~~~~~------------------~~~l~~~~~s~~~~~~i~f~---py~~~e~~~il~~r~~~---~ 223 (394)
T PRK00411 172 ----ARIGVIGISSDLTF------------------LYILDPRVKSVFRPEEIYFP---PYTADEIFDILKDRVEE---G 223 (394)
T ss_pred ----CeEEEEEEECCcch------------------hhhcCHHHHhcCCcceeecC---CCCHHHHHHHHHHHHHh---h
Confidence 24557777774211 1235566666663 468999 99999999999887732 1
Q ss_pred hccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633 418 NNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMD 456 (550)
Q Consensus 418 l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~ 456 (550)
+ . .-.+++++++.+++......| +.|-.-.++.
T Consensus 224 ~--~---~~~~~~~~l~~i~~~~~~~~G-d~r~a~~ll~ 256 (394)
T PRK00411 224 F--Y---PGVVDDEVLDLIADLTAREHG-DARVAIDLLR 256 (394)
T ss_pred c--c---cCCCCHhHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence 1 1 124799999999875432234 4454445544
No 187
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.24 E-value=6e-11 Score=132.29 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=82.8
Q ss_pred CCeEEeccccccCHHHHHHHHHhhhhccccccccC-Ce------Ee----ecCCeEEEEeCCCChHHHHHhhhhhhHhhH
Q 036633 302 YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IA------AF----DLTNTLIIMTSDLKDEQVYEVMLTATYGRV 370 (550)
Q Consensus 302 ~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~------~v----d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~ 370 (550)
++++||||++.+++.+|..|+++|++| . +.-. +. .+ ---++.+|+++|...
T Consensus 218 gGtL~Ldei~~L~~~~q~~Ll~~L~~~--~-i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~--------------- 279 (608)
T TIGR00764 218 KGVLYIDEIKTMPLEVQQYLLTALQDK--K-FPITGQSENSSGAMVRTEPVPCDFILVASGNLDD--------------- 279 (608)
T ss_pred CCEEEEEChHhCCHHHHHHHHHHHHhC--c-EEecCccccccccccCCCCCccceEEEEECCHHH---------------
Confidence 479999999999999999999999999 4 3332 10 00 012456899988521
Q ss_pred HHHhccCCChhhhhhcc---ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcc-----
Q 036633 371 NEVTGSLFKPSLLKLLD---KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAAR----- 442 (550)
Q Consensus 371 ~~~l~~~f~p~ll~Rid---~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~----- 442 (550)
...|+|+|++||+ ..+.|..-.|.+.+....++.. + .+.+++.|. .-.++++++..|.++...
T Consensus 280 ----l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~-i---~~~~~r~G~-l~~~s~~Av~~Li~~~~R~ag~r 350 (608)
T TIGR00764 280 ----LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQF-V---AQEVKKDGR-IPHFTRDAVEEIVREAQRRAGRK 350 (608)
T ss_pred ----HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHH-H---HHHHHHhCC-CCcCCHHHHHHHHHHHHHHHhcc
Confidence 1368999999998 5667763334456666555443 2 222333444 347899999999864221
Q ss_pred -cCCCcccHHHHHHcc
Q 036633 443 -KYGQNGEGLKRWMDQ 457 (550)
Q Consensus 443 -~~GaN~R~L~~~i~~ 457 (550)
....+.|.|.++++.
T Consensus 351 ~~lsl~~R~L~~llR~ 366 (608)
T TIGR00764 351 DHLTLRLRELGGLVRA 366 (608)
T ss_pred cccCCCHHHHHHHHHH
Confidence 112244777777765
No 188
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.24 E-value=6.8e-11 Score=112.97 Aligned_cols=174 Identities=11% Similarity=0.172 Sum_probs=121.2
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
-+.+||.++.++++.-..... +- .+++|.||||||||+.+.+||+.|.+.. ..+.+..+|.|+-..-.
T Consensus 26 l~dIVGNe~tv~rl~via~~g----------nm-P~liisGpPG~GKTTsi~~LAr~LLG~~-~ke~vLELNASdeRGID 93 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEG----------NM-PNLIISGPPGTGKTTSILCLARELLGDS-YKEAVLELNASDERGID 93 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcC----------CC-CceEeeCCCCCchhhHHHHHHHHHhChh-hhhHhhhccCccccccH
Confidence 357999999999976655533 22 4899999999999999999999998721 22356777877655444
Q ss_pred hhhhHHhHHHHH-HHh--CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633 285 SIKHFFDSLAAL-VKK--RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV 361 (550)
Q Consensus 285 ~~s~liG~lt~a-l~~--~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~ 361 (550)
.+..-|..|.+. +.- ..+.||+|||.|.+....|+.|.+.++=- . +.|.|.+++|.....
T Consensus 94 vVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiy--S-----------~ttRFalaCN~s~KI---- 156 (333)
T KOG0991|consen 94 VVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIY--S-----------NTTRFALACNQSEKI---- 156 (333)
T ss_pred HHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHH--c-----------ccchhhhhhcchhhh----
Confidence 443333333332 222 23469999999999999999999999855 3 345689999975322
Q ss_pred hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHh
Q 036633 362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIAS 438 (550)
Q Consensus 362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~ 438 (550)
-+++-+|| .++.|. .|+..++..-+.... +.. .+.++++.++.+.-
T Consensus 157 -----------------iEPIQSRC-AiLRys---klsd~qiL~Rl~~v~-------k~E---kv~yt~dgLeaiif 202 (333)
T KOG0991|consen 157 -----------------IEPIQSRC-AILRYS---KLSDQQILKRLLEVA-------KAE---KVNYTDDGLEAIIF 202 (333)
T ss_pred -----------------hhhHHhhh-Hhhhhc---ccCHHHHHHHHHHHH-------HHh---CCCCCcchHHHhhh
Confidence 23488999 799999 999876654333322 123 34777777777654
No 189
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=1.7e-10 Score=118.93 Aligned_cols=145 Identities=19% Similarity=0.203 Sum_probs=105.7
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------CCCc
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------NDNH 271 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------~~~~ 271 (550)
.+..+.+.+.+++... + -|..+||.||+|+||+++|+.+|+.+...+. ++..
T Consensus 6 W~~~~~~~l~~~~~~~---r-------l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (325)
T PRK06871 6 WLQPTYQQITQAFQQG---L-------GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD 75 (325)
T ss_pred chHHHHHHHHHHHHcC---C-------cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 4566677777777765 1 3489999999999999999999999976210 0111
Q ss_pred eeEEecCCCCchhhhhhHHh-----HHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 272 LIHFDMGNYTELESIKHFFD-----SLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 272 li~id~s~~~~~~~~s~liG-----~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
+..+.-. ...-+| .+.+.+... ++.|++||++|+++...+|.||+.||+. .
T Consensus 76 ~~~i~p~-------~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP--p----------- 135 (325)
T PRK06871 76 FHILEPI-------DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEP--R----------- 135 (325)
T ss_pred EEEEccc-------cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCC--C-----------
Confidence 2222110 011133 444444443 4579999999999999999999999998 6
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHH
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW 409 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~ 409 (550)
.+++||++|+.. ....|.++||| +.+.|. |++.+++...+..
T Consensus 136 ~~~~fiL~t~~~---------------------~~llpTI~SRC-~~~~~~---~~~~~~~~~~L~~ 177 (325)
T PRK06871 136 PNTYFLLQADLS---------------------AALLPTIYSRC-QTWLIH---PPEEQQALDWLQA 177 (325)
T ss_pred CCeEEEEEECCh---------------------HhCchHHHhhc-eEEeCC---CCCHHHHHHHHHH
Confidence 778899988753 35677899999 899999 9999988776654
No 190
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.24 E-value=6.7e-11 Score=129.88 Aligned_cols=199 Identities=13% Similarity=0.086 Sum_probs=121.2
Q ss_pred HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcC-CCC--cCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCC
Q 036633 195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKG-LSS--RRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDN 270 (550)
Q Consensus 195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~g-l~~--~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~ 270 (550)
+.+..+...+...++|++.++..+.-++... ... ..+ .-+. .++||+|+||||||.+|+.+++.+.+ .
T Consensus 192 ~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg---~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r---~-- 263 (509)
T smart00350 192 DIYERLSRSLAPSIYGHEDIKKAILLLLFGG---VHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR---A-- 263 (509)
T ss_pred HHHHHHHHhhCccccCcHHHHHHHHHHHhCC---CccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc---c--
Confidence 4466788889999999999987776666442 100 000 1112 58999999999999999999998754 1
Q ss_pred ceeE---EecCCCCchhhhhhHHhHH---HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec-C
Q 036633 271 HLIH---FDMGNYTELESIKHFFDSL---AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL-T 343 (550)
Q Consensus 271 ~li~---id~s~~~~~~~~s~liG~l---t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~-~ 343 (550)
.++. .++..+.....-...-|.+ .+++.....+++++||++++++..|..|+++|+.+++. +.-.|....+ .
T Consensus 264 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~-i~k~G~~~~l~~ 342 (509)
T smart00350 264 VYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTIS-IAKAGITTTLNA 342 (509)
T ss_pred eEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEE-EEeCCEEEEecC
Confidence 2332 1222222100000011110 11222345689999999999999999999999999332 2222443333 3
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACE 412 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~ 412 (550)
++.||+|+|.-...... + ..+.+ .-.++|++++|||-++.+. .+.+.+.-..|+.+.+.
T Consensus 343 ~~~viAa~NP~~g~y~~---~---~~~~~--n~~l~~~lLsRFdLi~~~~--d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 343 RCSVLAAANPIGGRYDP---K---LTPEE--NIDLPAPILSRFDLLFVVL--DEVDEERDRELAKHVVD 401 (509)
T ss_pred CcEEEEEeCCCCcccCC---C---cChhh--ccCCChHHhCceeeEEEec--CCCChHHHHHHHHHHHH
Confidence 57799999964211000 0 00000 0157999999999766553 15666666777777654
No 191
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.23 E-value=1e-10 Score=135.78 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=118.5
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~ 281 (550)
..++||++.+.++...+.+. ...+.+|+||||||||++|+.+|..+.... ....+++.+|++.+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~-----------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~ 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR-----------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC-----------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHh
Confidence 45999999999998888765 235778999999999999999999874310 123467888877653
Q ss_pred chhhhhhHHh-------HHHHHHHh-CCCCeEEeccccccC--------HHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633 282 ELESIKHFFD-------SLAALVKK-RPYSVVLFDKIEKAN--------SSILNLLLKILKTDFNRKATRGIAAFDLTNT 345 (550)
Q Consensus 282 ~~~~~s~liG-------~lt~al~~-~p~~VlllDEIeka~--------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ 345 (550)
... ...| .+...+.. ....|||||||+.+. .++.+.|...+..| . +
T Consensus 242 a~~---~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g--~-i------------ 303 (852)
T TIGR03346 242 AGA---KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG--E-L------------ 303 (852)
T ss_pred hcc---hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC--c-e------------
Confidence 211 1122 22222222 335799999999764 35788888888888 4 2
Q ss_pred EEEEeCCCChHHHHHhhhhhhHhhHHHHhccC--CChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633 346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSL--FKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA 423 (550)
Q Consensus 346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~--f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~ 423 (550)
.+|.+||... .+.+ .+|+|.+|| +.|.+. +++.++...|+.....++.. .+
T Consensus 304 ~~IgaTt~~e------------------~r~~~~~d~al~rRf-~~i~v~---~p~~~~~~~iL~~~~~~~e~---~~-- 356 (852)
T TIGR03346 304 HCIGATTLDE------------------YRKYIEKDAALERRF-QPVFVD---EPTVEDTISILRGLKERYEV---HH-- 356 (852)
T ss_pred EEEEeCcHHH------------------HHHHhhcCHHHHhcC-CEEEeC---CCCHHHHHHHHHHHHHHhcc---cc--
Confidence 3677777521 1122 489999999 567777 67888888887655443321 13
Q ss_pred ccccCCHHHHHHHHh
Q 036633 424 VIVCPSTSALVHIAS 438 (550)
Q Consensus 424 ~~l~~~~~a~~~L~~ 438 (550)
.+.++++++...+.
T Consensus 357 -~v~~~d~~i~~~~~ 370 (852)
T TIGR03346 357 -GVRITDPAIVAAAT 370 (852)
T ss_pred -CCCCCHHHHHHHHH
Confidence 34677877777764
No 192
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.6e-10 Score=125.02 Aligned_cols=230 Identities=19% Similarity=0.217 Sum_probs=141.2
Q ss_pred HhhhhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCC--CCcC
Q 036633 159 VHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL--SSRR 236 (550)
Q Consensus 159 ~~~~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl--~~~~ 236 (550)
++.+.+....++.+++.+-++.++-.-+..+...... .+ =-..|-|-.++++.+.+.+.+.- ++--+ ..|-
T Consensus 626 leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~t---gi---~w~digg~~~~k~~l~~~i~~P~-kyp~if~~~pl 698 (952)
T KOG0735|consen 626 LERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKST---GI---RWEDIGGLFEAKKVLEEVIEWPS-KYPQIFANCPL 698 (952)
T ss_pred HHHhccCcccchHHHHHHHHHhcChHHhhhccccccC---CC---CceecccHHHHHHHHHHHHhccc-cchHHHhhCCc
Confidence 4444444447888888887776542111111000000 00 11456777888888877776650 00000 0121
Q ss_pred CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh--------HHHHHHHhCCCCeEEe
Q 036633 237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD--------SLAALVKKRPYSVVLF 307 (550)
Q Consensus 237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG--------~lt~al~~~p~~Vlll 307 (550)
+- ..+||+||||||||.+|.++|....- .||.+-..++ .++.|| .|..|-..+| +|+||
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~------~fisvKGPEl-----L~KyIGaSEq~vR~lF~rA~~a~P-CiLFF 766 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNL------RFISVKGPEL-----LSKYIGASEQNVRDLFERAQSAKP-CILFF 766 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCe------eEEEecCHHH-----HHHHhcccHHHHHHHHHHhhccCC-eEEEe
Confidence 22 68899999999999999999988755 7777765554 678888 2233323355 99999
Q ss_pred ccccccCH-----------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc
Q 036633 308 DKIEKANS-----------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS 376 (550)
Q Consensus 308 DEIeka~~-----------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~ 376 (550)
||+|..-| .|.|.||.-||.- . - +..+.|+++|..+ .
T Consensus 767 DEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~--E-g--------l~GV~i~aaTsRp---------------------d 814 (952)
T KOG0735|consen 767 DEFDSIAPKRGHDSTGVTDRVVNQLLTELDGA--E-G--------LDGVYILAATSRP---------------------D 814 (952)
T ss_pred ccccccCcccCCCCCCchHHHHHHHHHhhccc--c-c--------cceEEEEEecCCc---------------------c
Confidence 99998755 5899999888754 3 1 2345556655543 4
Q ss_pred CCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHH-HHHHHHhcCcccCCCcccHHHH
Q 036633 377 LFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTS-ALVHIASNAARKYGQNGEGLKR 453 (550)
Q Consensus 377 ~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~-a~~~L~~~~~~~~GaN~R~L~~ 453 (550)
.++|+++ +|+|..|.-+ ..++.+..+|+...-+ ++..+++ -+++++...-.-.| -+|+.
T Consensus 815 liDpALLRpGRlD~~v~C~---~P~~~eRl~il~~ls~------------s~~~~~~vdl~~~a~~T~g~tg---ADlq~ 876 (952)
T KOG0735|consen 815 LIDPALLRPGRLDKLVYCP---LPDEPERLEILQVLSN------------SLLKDTDVDLECLAQKTDGFTG---ADLQS 876 (952)
T ss_pred ccCHhhcCCCccceeeeCC---CCCcHHHHHHHHHHhh------------ccCCccccchHHHhhhcCCCch---hhHHH
Confidence 6788888 8999888888 6677777777654332 1222333 36777764321123 57777
Q ss_pred HHcc
Q 036633 454 WMDQ 457 (550)
Q Consensus 454 ~i~~ 457 (550)
.+..
T Consensus 877 ll~~ 880 (952)
T KOG0735|consen 877 LLYN 880 (952)
T ss_pred HHHH
Confidence 7766
No 193
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.21 E-value=6.9e-11 Score=131.55 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=79.1
Q ss_pred CCeEEeccccccCHHHHHHHHHhhhhccccccccC------------CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhh
Q 036633 302 YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG------------IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGR 369 (550)
Q Consensus 302 ~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~------------g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~ 369 (550)
+++|||||++.+++..|..|+++|++|.+. +... ...+| +.+|+++|...
T Consensus 227 GGtL~LDei~~L~~~~q~~Llr~L~~~~i~-i~g~~e~~~~~~~~~~~ip~d---vrvI~a~~~~l-------------- 288 (637)
T PRK13765 227 KGVLFIDEINTLDLESQQSLLTAMQEKKFP-ITGQSERSSGAMVRTEPVPCD---FIMVAAGNLDA-------------- 288 (637)
T ss_pred CcEEEEeChHhCCHHHHHHHHHHHHhCCEE-ecccccccccccCCCcceeee---eEEEEecCcCH--------------
Confidence 479999999999999999999999999333 2111 12233 44899998732
Q ss_pred HHHHhccCCChhhhhhcc---ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCC
Q 036633 370 VNEVTGSLFKPSLLKLLD---KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQ 446 (550)
Q Consensus 370 ~~~~l~~~f~p~ll~Rid---~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~Ga 446 (550)
...++|+|.+||. ..+.|+ .-. ++.......++..+.+.+...|- ...++++++..|.++.....|-
T Consensus 289 -----l~~~dpdL~~rfk~~~v~v~f~---~~~-~d~~e~~~~~~~~iaqe~~~~G~-l~~f~~eAVa~LI~~~~R~ag~ 358 (637)
T PRK13765 289 -----LENMHPALRSRIKGYGYEVYMR---DTM-EDTPENRRKLVRFVAQEVKRDGK-IPHFDRDAVEEIIREAKRRAGR 358 (637)
T ss_pred -----HHhhhHHHHHHhccCeEEEEcc---ccc-CCCHHHHHHHHHHHHHHhhhccC-CCCCCHHHHHHHHHHHHHHhCC
Confidence 1345899999985 346666 333 34555556666666666655544 4579999999999854333343
No 194
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=2.4e-10 Score=117.59 Aligned_cols=152 Identities=19% Similarity=0.159 Sum_probs=106.6
Q ss_pred ccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCC---------------Cce
Q 036633 208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDND---------------NHL 272 (550)
Q Consensus 208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~---------------~~l 272 (550)
.--|..+.+.+..++... +-|..+||+||+|+||+++|..+|+.+...+... -.+
T Consensus 6 yPW~~~~~~~l~~~~~~~----------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 6 SPWQQRAYDQTVAALDAG----------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred cccHHHHHHHHHHHHHcC----------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 445777888888887765 1457899999999999999999999998632110 112
Q ss_pred eEEe-cCCCCchhhhhhHHh-----HHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 273 IHFD-MGNYTELESIKHFFD-----SLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 273 i~id-~s~~~~~~~~s~liG-----~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
..++ ..+.... ..+.-|+ .+.+.+...| +.|++||++|+++.+.+|.||+.||+. .
T Consensus 76 ~~i~~~p~~~~~-k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p----------- 141 (319)
T PRK08769 76 QLVSFIPNRTGD-KLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP--S----------- 141 (319)
T ss_pred EEEecCCCcccc-cccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC--C-----------
Confidence 2221 0110000 0001123 4445444444 469999999999999999999999988 6
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE 408 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~ 408 (550)
.+++||++|+.. ..+.|.++||| .++.|. +++.+++...+.
T Consensus 142 ~~~~fiL~~~~~---------------------~~lLpTIrSRC-q~i~~~---~~~~~~~~~~L~ 182 (319)
T PRK08769 142 PGRYLWLISAQP---------------------ARLPATIRSRC-QRLEFK---LPPAHEALAWLL 182 (319)
T ss_pred CCCeEEEEECCh---------------------hhCchHHHhhh-eEeeCC---CcCHHHHHHHHH
Confidence 678888888753 35568899999 899999 899887776654
No 195
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.5e-10 Score=116.09 Aligned_cols=171 Identities=20% Similarity=0.291 Sum_probs=112.5
Q ss_pred CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh---HHHHHHH-----hCCCCeEEe
Q 036633 237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD---SLAALVK-----KRPYSVVLF 307 (550)
Q Consensus 237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG---~lt~al~-----~~p~~Vlll 307 (550)
+| ..+|++||||||||.+|+++|+.... +|+-+.||.+++ +++| .++.++- -.| ++||+
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akeaga------~fInv~~s~lt~-----KWfgE~eKlv~AvFslAsKl~P-~iIFI 192 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEAGA------NFINVSVSNLTS-----KWFGEAQKLVKAVFSLASKLQP-SIIFI 192 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHcCC------Ccceeeccccch-----hhHHHHHHHHHHHHhhhhhcCc-ceeeh
Confidence 45 78999999999999999999999877 999999999865 6667 3444443 355 89999
Q ss_pred cccccc--------CH---HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc
Q 036633 308 DKIEKA--------NS---SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS 376 (550)
Q Consensus 308 DEIeka--------~~---~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~ 376 (550)
|||+.. |. -+-+-|.-.. +| - .++.+ ..++|..+||.+.+
T Consensus 193 DEvds~L~~R~s~dHEa~a~mK~eFM~~W-DG--l-~s~~~-----~rVlVlgATNRP~D-------------------- 243 (386)
T KOG0737|consen 193 DEVDSFLGQRRSTDHEATAMMKNEFMALW-DG--L-SSKDS-----ERVLVLGATNRPFD-------------------- 243 (386)
T ss_pred hhHHHHHhhcccchHHHHHHHHHHHHHHh-cc--c-cCCCC-----ceEEEEeCCCCCcc--------------------
Confidence 999854 22 2223333333 23 1 22221 23677888998743
Q ss_pred CCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633 377 LFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMD 456 (550)
Q Consensus 377 ~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~ 456 (550)
...+++.|+...+... -.+.+...+|+.-.|.. ..+ .=.++ +..++..+- |..|++|+....
T Consensus 244 -lDeAiiRR~p~rf~V~---lP~~~qR~kILkviLk~-------e~~-e~~vD---~~~iA~~t~---GySGSDLkelC~ 305 (386)
T KOG0737|consen 244 -LDEAIIRRLPRRFHVG---LPDAEQRRKILKVILKK-------EKL-EDDVD---LDEIAQMTE---GYSGSDLKELCR 305 (386)
T ss_pred -HHHHHHHhCcceeeeC---CCchhhHHHHHHHHhcc-------ccc-CcccC---HHHHHHhcC---CCcHHHHHHHHH
Confidence 4567999999998888 55678888998888843 111 11122 344444322 335589998887
Q ss_pred c---hhhHHHHHh
Q 036633 457 Q---RPSADHVID 466 (550)
Q Consensus 457 ~---~~la~~~l~ 466 (550)
. .|+-..+-+
T Consensus 306 ~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 306 LAALRPIRELLVS 318 (386)
T ss_pred HHhHhHHHHHHHh
Confidence 7 444444333
No 196
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=4.4e-10 Score=115.53 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=104.0
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-----------------CCCce
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-----------------NDNHL 272 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-----------------~~~~l 272 (550)
.|....+.+..++... +-|..+||.||.|+||+.+|+.+|+.+...+. ++..|
T Consensus 7 Wl~~~~~~l~~~~~~~----------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 7 WLVPVWQNWKAGLDAG----------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred cHHHHHHHHHHHHHcC----------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 4566677777777655 13489999999999999999999999976221 11122
Q ss_pred eEEecCCCCchhhhhhHHh-----HHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633 273 IHFDMGNYTELESIKHFFD-----SLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 273 i~id~s~~~~~~~~s~liG-----~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
..+.-.. ..+.|+ .+.+.+... ++.|++||++|+++...+|.||+.+|+. . .
T Consensus 77 ~~i~p~~------~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p-----------~ 137 (319)
T PRK06090 77 HVIKPEK------EGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEP--A-----------P 137 (319)
T ss_pred EEEecCc------CCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC--C-----------C
Confidence 2222110 011122 344444433 4679999999999999999999999998 6 7
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE 408 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~ 408 (550)
+++||++|+.. ..+-|-++||| ..+.|. |++.+++...+.
T Consensus 138 ~t~fiL~t~~~---------------------~~lLpTI~SRC-q~~~~~---~~~~~~~~~~L~ 177 (319)
T PRK06090 138 NCLFLLVTHNQ---------------------KRLLPTIVSRC-QQWVVT---PPSTAQAMQWLK 177 (319)
T ss_pred CeEEEEEECCh---------------------hhChHHHHhcc-eeEeCC---CCCHHHHHHHHH
Confidence 78899887753 35567799999 899999 999988877654
No 197
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-10 Score=113.08 Aligned_cols=156 Identities=18% Similarity=0.337 Sum_probs=109.0
Q ss_pred CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
..|=|-+.-|+.+.+++....- ...|+ +| ..+|++||||||||.+|++.|..... .|..+-..
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi----~pPKGvLmYGPPGTGKTlmARAcAaqT~a------TFLKLAgP- 239 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGI----RPPKGVLMYGPPGTGKTLMARACAAQTNA------TFLKLAGP- 239 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCC----CCCCceEeeCCCCCcHHHHHHHHHHhccc------hHHHhcch-
Confidence 3467888899999998865411 13344 44 68899999999999999999987544 56554432
Q ss_pred CCchhhhhhHHh--------HHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhh--hccccccccCCe
Q 036633 280 YTELESIKHFFD--------SLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILK--TDFNRKATRGIA 338 (550)
Q Consensus 280 ~~~~~~~s~liG--------~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld--~g~~~~l~d~g~ 338 (550)
..+..+|| .|.-+-.+.| ++||+||++.. +.+||...|.+|. +| +...
T Consensus 240 ----QLVQMfIGdGAkLVRDAFaLAKEkaP-~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG----Fss~-- 308 (424)
T KOG0652|consen 240 ----QLVQMFIGDGAKLVRDAFALAKEKAP-TIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG----FSSD-- 308 (424)
T ss_pred ----HHHhhhhcchHHHHHHHHHHhhccCC-eEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC----CCCc--
Confidence 34667777 2222223455 89999999753 4578888888874 34 2111
Q ss_pred EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633 339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l 411 (550)
..+-+|++||.- ..+.|+++ +|+|.-|.|+ -.+++...+|+..+-
T Consensus 309 ----~~vKviAATNRv---------------------DiLDPALlRSGRLDRKIEfP---~Pne~aRarIlQIHs 355 (424)
T KOG0652|consen 309 ----DRVKVIAATNRV---------------------DILDPALLRSGRLDRKIEFP---HPNEEARARILQIHS 355 (424)
T ss_pred ----cceEEEeecccc---------------------cccCHHHhhcccccccccCC---CCChHHHHHHHHHhh
Confidence 234478999973 47789988 8999999999 778877777766543
No 198
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.18 E-value=1.1e-10 Score=126.51 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=106.2
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec--------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM-------- 277 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~-------- 277 (550)
..++||..+++.+.-++... .+++|.||||+|||++++.|+..+... .. =..+++
T Consensus 191 ~~v~Gq~~~~~al~laa~~G-------------~~llliG~~GsGKTtLak~L~gllpp~---~g-~e~le~~~i~s~~g 253 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAAGG-------------HNLLLIGPPGTGKTMLASRINGLLPDL---SN-EEALESAAILSLVN 253 (506)
T ss_pred EEEECcHHHHhhhheeccCC-------------cEEEEECCCCCcHHHHHHHHhccCCCC---CC-cEEEecchhhhhhc
Confidence 36889998887643332211 699999999999999999999877541 10 011111
Q ss_pred ----------CCCCchh---hhhhHHh----HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeE
Q 036633 278 ----------GNYTELE---SIKHFFD----SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAA 339 (550)
Q Consensus 278 ----------s~~~~~~---~~s~liG----~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~ 339 (550)
.-|...| +...++| .-.+.+....++|+|+||++.+++.+|+.|++.|++|.++ +... +..
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~-I~r~g~~~ 332 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIH-LSRTRAKI 332 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEE-EecCCcce
Confidence 1122222 2334666 1234555666799999999999999999999999999433 3333 333
Q ss_pred eecCCeEEEEeCCCChHHHHHh-hhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633 340 FDLTNTLIIMTSDLKDEQVYEV-MLTATYGRVNEVTGSLFKPSLLKLLDKLVVID 393 (550)
Q Consensus 340 vd~~~~iiI~TsN~g~~~~~~~-~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~ 393 (550)
..-.+..+|+|+|......... .+.-+.... ..-...+++.+++|||-.+...
T Consensus 333 ~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~-~~Y~~~ls~plLDRfdL~v~v~ 386 (506)
T PRK09862 333 TYPARFQLVAAMNPSPTGHYQGNHNRCTPEQT-LRYLNRLSGPFLDRFDLSLEIP 386 (506)
T ss_pred eccCCEEEEEeecCccceecCCCCCCcCHHHH-HHHHhhCCHhHHhhccEEEEeC
Confidence 3335677999999753211110 000000111 1122467889999999888888
No 199
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.9e-11 Score=116.61 Aligned_cols=157 Identities=20% Similarity=0.293 Sum_probs=110.3
Q ss_pred cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG 278 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s 278 (550)
-..+=|-+.-++.|.+++...+- -..|+ +| .-++++|+||||||.||+++|+.... .|+|+-.|
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGi----kpPKGVIlyG~PGTGKTLLAKAVANqTSA------TFlRvvGs 253 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGI----KPPKGVILYGEPGTGKTLLAKAVANQTSA------TFLRVVGS 253 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC----CCCCeeEEeCCCCCchhHHHHHHhcccch------hhhhhhhH
Confidence 45677889999999998876521 02233 44 78899999999999999999987655 88888777
Q ss_pred CCCchhhhhhHHh-------HHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccC-CeE
Q 036633 279 NYTELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRG-IAA 339 (550)
Q Consensus 279 ~~~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~-g~~ 339 (550)
++ +.+.+| ++-.....+.-||+|+|||+... .++|..+|.+|..- |+ ...
T Consensus 254 eL-----iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQl------dGFdsr 322 (440)
T KOG0726|consen 254 EL-----IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL------DGFDSR 322 (440)
T ss_pred HH-----HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhc------cCcccc
Confidence 65 444444 33333333344999999998653 47888888887421 11 111
Q ss_pred eecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHH
Q 036633 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREW 409 (550)
Q Consensus 340 vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~ 409 (550)
.++-+||+||.- ..++|+|+ +|||.-|.|. ..+.....+|...
T Consensus 323 ---gDvKvimATnri---------------------e~LDPaLiRPGrIDrKIef~---~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 323 ---GDVKVIMATNRI---------------------ETLDPALIRPGRIDRKIEFP---LPDEKTKKKIFQI 367 (440)
T ss_pred ---CCeEEEEecccc---------------------cccCHhhcCCCccccccccC---CCchhhhceeEEE
Confidence 334489999963 46788888 8999999999 6666666666543
No 200
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=4e-10 Score=117.03 Aligned_cols=145 Identities=14% Similarity=0.097 Sum_probs=104.4
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------CCCc
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------NDNH 271 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------~~~~ 271 (550)
.+..+.+.+.+++... + -|..+||+||+|+||+++|.++|+.+...+. .+-.
T Consensus 6 Wl~~~~~~l~~~~~~~---r-------l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (334)
T PRK07993 6 WLRPDYEQLVGSYQAG---R-------GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_pred CChHHHHHHHHHHHcC---C-------cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 4566777777777765 1 3489999999999999999999999976210 1111
Q ss_pred eeEEecCCCCchhhhhhHHh-----HHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 272 LIHFDMGNYTELESIKHFFD-----SLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 272 li~id~s~~~~~~~~s~liG-----~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
+..+.- +.. ...|+ .+.+.+..+ ++.|++||++|+++....|.||+.||+. .
T Consensus 76 ~~~i~p----~~~--~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p----------- 136 (334)
T PRK07993 76 YYTLTP----EKG--KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP--P----------- 136 (334)
T ss_pred EEEEec----ccc--cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC--C-----------
Confidence 222211 100 01133 444444444 4569999999999999999999999998 6
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE 408 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~ 408 (550)
.+++||++|+.. ..+.|-++||| +.+.|. |++.+++...+.
T Consensus 137 ~~t~fiL~t~~~---------------------~~lLpTIrSRC-q~~~~~---~~~~~~~~~~L~ 177 (334)
T PRK07993 137 ENTWFFLACREP---------------------ARLLATLRSRC-RLHYLA---PPPEQYALTWLS 177 (334)
T ss_pred CCeEEEEEECCh---------------------hhChHHHHhcc-ccccCC---CCCHHHHHHHHH
Confidence 678899888754 35667899999 789999 999988877654
No 201
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.6e-10 Score=112.29 Aligned_cols=146 Identities=21% Similarity=0.345 Sum_probs=107.1
Q ss_pred cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
-..|=|..+-++++.+.+...+. ...|+.. |..+|++||||||||.+|+++|+.... -||++=.|+
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidp---pkgvllygppgtgktl~aravanrtda------cfirvigse 246 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDP---PKGVLLYGPPGTGKTLCARAVANRTDA------CFIRVIGSE 246 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCC---CCceEEeCCCCCchhHHHHHHhcccCc------eEEeehhHH
Confidence 45678889999888888766532 1344422 267899999999999999999976544 899988777
Q ss_pred CCchhhhhhHHh-------HHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhh--ccccccccCCeE
Q 036633 280 YTELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKT--DFNRKATRGIAA 339 (550)
Q Consensus 280 ~~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~--g~~~~l~d~g~~ 339 (550)
+ +.+.+| .|-+..+.+.-++||||||+.. +.+||..+|.++.. | . |.
T Consensus 247 l-----vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldg--f---dp--- 313 (435)
T KOG0729|consen 247 L-----VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG--F---DP--- 313 (435)
T ss_pred H-----HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccC--C---CC---
Confidence 5 555566 5555666677799999999854 35788888888742 3 1 11
Q ss_pred eecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCC
Q 036633 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLA 395 (550)
Q Consensus 340 vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~ 395 (550)
-.|.-++|+||.+ ..+.|+|+ +|+|.-|.|.+|
T Consensus 314 --rgnikvlmatnrp---------------------dtldpallrpgrldrkvef~lp 348 (435)
T KOG0729|consen 314 --RGNIKVLMATNRP---------------------DTLDPALLRPGRLDRKVEFGLP 348 (435)
T ss_pred --CCCeEEEeecCCC---------------------CCcCHhhcCCcccccceeccCC
Confidence 0344589999986 46788888 899999999933
No 202
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.15 E-value=1.9e-09 Score=112.08 Aligned_cols=212 Identities=17% Similarity=0.123 Sum_probs=140.1
Q ss_pred hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC--eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE---Eec
Q 036633 203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL--GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH---FDM 277 (550)
Q Consensus 203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p--~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~---id~ 277 (550)
.+..-++||+.....+.-... .| +.+|+.|+.|||||+++|+||..|... ..+. |+|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~-----~~V~gc~f~c 75 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLPEI-----EVVIGCPFNC 75 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCCcc-----ceecCCCCCC
Confidence 445678999998877654422 44 889999999999999999999999651 1111 111
Q ss_pred C-------------------------------CCCchhhhhhHHh--HHHHHHHh------------CCCCeEEeccccc
Q 036633 278 G-------------------------------NYTELESIKHFFD--SLAALVKK------------RPYSVVLFDKIEK 312 (550)
Q Consensus 278 s-------------------------------~~~~~~~~s~liG--~lt~al~~------------~p~~VlllDEIek 312 (550)
. ......+..+++| .+..+++. ...+|+++||+.-
T Consensus 76 dP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnl 155 (423)
T COG1239 76 DPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNL 155 (423)
T ss_pred CCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccc
Confidence 1 1111123445777 34444442 2348999999999
Q ss_pred cCHHHHHHHHHhhhhccccccccCCeEeec-CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeE
Q 036633 313 ANSSILNLLLKILKTDFNRKATRGIAAFDL-TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391 (550)
Q Consensus 313 a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~-~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~ 391 (550)
++..+++.||.+++.|.|. ++..|..+.. .+.++|.|.|.. ++-++|.|+.||...|.
T Consensus 156 L~d~lvd~LLd~aaeG~n~-vereGisi~hpa~fvligTmNPE--------------------eGeLrpqLlDRfg~~v~ 214 (423)
T COG1239 156 LDDHLVDALLDVAAEGVND-VEREGISIRHPARFLLIGTMNPE--------------------EGELRPQLLDRFGLEVD 214 (423)
T ss_pred ccHHHHHHHHHHHHhCCce-eeeCceeeccCccEEEEeecCcc--------------------ccccchhhHhhhcceee
Confidence 9999999999999999555 4444555433 457899999974 36789999999988777
Q ss_pred ecCCCCCCHHHHHHHHHHHHHH----------H-------HHHh--ccCCCccccCCHHHHHHHHhcCc-ccCCCcccHH
Q 036633 392 IDLAVPLLDTTRLLLREWACEE----------T-------KRRN--NDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGL 451 (550)
Q Consensus 392 f~~~~pL~~e~i~~I~~~~l~~----------~-------~~~l--~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L 451 (550)
.. +|.+.++...|+.+.+.. + ..+. +..+...+.+++.+..+++..|. ...+ +.|+-
T Consensus 215 ~~--~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~-g~rad 291 (423)
T COG1239 215 TH--YPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVD-GHRAD 291 (423)
T ss_pred cc--CCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccC-CCchh
Confidence 77 255556666666654431 1 1111 12333367899999999988776 3222 23555
Q ss_pred HHHHc
Q 036633 452 KRWMD 456 (550)
Q Consensus 452 ~~~i~ 456 (550)
-.+.+
T Consensus 292 i~~~r 296 (423)
T COG1239 292 IVVVR 296 (423)
T ss_pred hHHHH
Confidence 44444
No 203
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.3e-10 Score=119.34 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=98.7
Q ss_pred CCC--eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEecccccc
Q 036633 236 RQL--GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKA 313 (550)
Q Consensus 236 ~~p--~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka 313 (550)
.+| ...||+||||||||++..|+|++|.- .++-+++++........+|+ ....+.|||+|.+||.+
T Consensus 231 GkawKRGYLLYGPPGTGKSS~IaAmAn~L~y------dIydLeLt~v~~n~dLr~LL------~~t~~kSIivIEDIDcs 298 (457)
T KOG0743|consen 231 GKAWKRGYLLYGPPGTGKSSFIAAMANYLNY------DIYDLELTEVKLDSDLRHLL------LATPNKSILLIEDIDCS 298 (457)
T ss_pred CcchhccceeeCCCCCCHHHHHHHHHhhcCC------ceEEeeeccccCcHHHHHHH------HhCCCCcEEEEeecccc
Confidence 355 68899999999999999999999966 78888888877655544441 22356789999999865
Q ss_pred C------------------HHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHh
Q 036633 314 N------------------SSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVT 374 (550)
Q Consensus 314 ~------------------~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l 374 (550)
- +=.+.-||..+|.= ... | .--|||||||-
T Consensus 299 ~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGl-----wSscg-----~ERIivFTTNh--------------------- 347 (457)
T KOG0743|consen 299 FDLRERRKKKKENFEGDLSRVTLSGLLNFLDGL-----WSSCG-----DERIIVFTTNH--------------------- 347 (457)
T ss_pred cccccccccccccccCCcceeehHHhhhhhccc-----cccCC-----CceEEEEecCC---------------------
Confidence 1 11345677777532 222 1 23479999996
Q ss_pred ccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633 375 GSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACE 412 (550)
Q Consensus 375 ~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~ 412 (550)
...++|+|+. |+|..|.+. -=+.+..+.++.++|.
T Consensus 348 ~EkLDPALlRpGRmDmhI~mg---yCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMG---YCTFEAFKTLASNYLG 384 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcC---CCCHHHHHHHHHHhcC
Confidence 3688999995 999999999 8899999999998884
No 204
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=6.6e-10 Score=115.30 Aligned_cols=135 Identities=16% Similarity=0.114 Sum_probs=94.3
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCC-C-C-----------------CceeEEecCCCC----------------
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNND-N-D-----------------NHLIHFDMGNYT---------------- 281 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-~-~-----------------~~li~id~s~~~---------------- 281 (550)
-|..+||+||+|+||+++|+.+|+.+...+. . . ..+..+......
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 4489999999999999999999999976220 0 0 112222111000
Q ss_pred ch----hhhhhHHh-----HHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633 282 EL----ESIKHFFD-----SLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLII 348 (550)
Q Consensus 282 ~~----~~~s~liG-----~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI 348 (550)
+. ...+..|+ .+.+.+... ++.|++||++|+++++..|.||+.||+. . .+++||
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p-----------~~t~fi 166 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEP--P-----------PGTVFL 166 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCC--C-----------cCcEEE
Confidence 00 00011233 344444433 3569999999999999999999999988 6 678888
Q ss_pred EeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHH
Q 036633 349 MTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW 409 (550)
Q Consensus 349 ~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~ 409 (550)
++|+.. ..+.|.++||| +.+.|. |++.+++...+..
T Consensus 167 L~t~~~---------------------~~LLpTI~SRc-q~i~~~---~~~~~~~~~~L~~ 202 (342)
T PRK06964 167 LVSARI---------------------DRLLPTILSRC-RQFPMT---VPAPEAAAAWLAA 202 (342)
T ss_pred EEECCh---------------------hhCcHHHHhcC-EEEEec---CCCHHHHHHHHHH
Confidence 887753 46778899999 899999 9999888877654
No 205
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.2e-10 Score=123.66 Aligned_cols=159 Identities=20% Similarity=0.275 Sum_probs=110.4
Q ss_pred cCcccCcHHHHHHHHHHHhcch--hhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633 205 KKRVFGQNDAIDVIFEALTKPK--AAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE 282 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~--~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~ 282 (550)
-..|.|.++|+..+.+.+.=.+ .++..+-. .-|.-++++||||||||.+|+++|-.... ||..+.-|+|.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~V------PFf~iSGS~FV- 220 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGV------PFFSISGSDFV- 220 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCC------Cceeccchhhh-
Confidence 3568999999988777664220 00111111 34578899999999999999999987666 99999988874
Q ss_pred hhhhhhHHh--------HHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEe
Q 036633 283 LESIKHFFD--------SLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAF 340 (550)
Q Consensus 283 ~~~~s~liG--------~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~v 340 (550)
..++| .+.++-+..| |||||||||.... ..+|.||.-+| | +..
T Consensus 221 ----emfVGvGAsRVRdLF~qAkk~aP-~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD-G----F~~----- 285 (596)
T COG0465 221 ----EMFVGVGASRVRDLFEQAKKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD-G----FGG----- 285 (596)
T ss_pred ----hhhcCCCcHHHHHHHHHhhccCC-CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhc-c----CCC-----
Confidence 44455 4566666677 9999999986542 24555555443 3 111
Q ss_pred ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633 341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 341 d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l 411 (550)
-..++++.+||.. ...+|+++ .|+|..|... ..+-...++|++-++
T Consensus 286 -~~gviviaaTNRp---------------------dVlD~ALlRpgRFDRqI~V~---~PDi~gRe~IlkvH~ 333 (596)
T COG0465 286 -NEGVIVIAATNRP---------------------DVLDPALLRPGRFDRQILVE---LPDIKGREQILKVHA 333 (596)
T ss_pred -CCceEEEecCCCc---------------------ccchHhhcCCCCcceeeecC---CcchhhHHHHHHHHh
Confidence 1346788888875 45677777 8999999988 666677777777555
No 206
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.8e-10 Score=114.37 Aligned_cols=188 Identities=20% Similarity=0.255 Sum_probs=118.5
Q ss_pred CCccCHHHHHH---HHHHHhCCCCCCCCCchHHHHHHHhhh-----hcCcccCcHHHHHHHHHHHhcchh-----hhcCC
Q 036633 166 KLAVDVEEIAE---VASKLTGIPASWFCTKPEERYMRVQGR-----LKKRVFGQNDAIDVIFEALTKPKA-----AKKGL 232 (550)
Q Consensus 166 ~~~v~~~~i~~---v~~~~~gip~~~~~~~~~~~l~~l~~~-----L~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl 232 (550)
...++..+|+. ++-..|-.|.......+....-++... --+.+-|--.-+..+.+.+..++. -+.|+
T Consensus 84 ~~~~D~~~i~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI 163 (388)
T KOG0651|consen 84 RRSVDKEKIARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGI 163 (388)
T ss_pred ccccchhhhccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCC
Confidence 45566666653 334455566666666655533222211 113355555556665555544311 12333
Q ss_pred CCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh--hhhhHHh-HHHHHHHhCCCCeEEec
Q 036633 233 SSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE--SIKHFFD-SLAALVKKRPYSVVLFD 308 (550)
Q Consensus 233 ~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~--~~s~liG-~lt~al~~~p~~VlllD 308 (550)
+| ..+++|||||+|||.+|+++|..+.. +|+.+-.|++.+.. ..+++|- .+..|-...| ||+|+|
T Consensus 164 ----k~Pkg~ll~GppGtGKTlla~~Vaa~mg~------nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~p-ciifmd 232 (388)
T KOG0651|consen 164 ----KPPKGLLLYGPPGTGKTLLARAVAATMGV------NFLKVVSSALVDKYIGESARLIRDMFRYAREVIP-CIIFMD 232 (388)
T ss_pred ----CCCceeEEeCCCCCchhHHHHHHHHhcCC------ceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCc-eEEeeh
Confidence 44 79999999999999999999999988 89998888874332 1234443 3333433455 999999
Q ss_pred cccc-----------cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccC
Q 036633 309 KIEK-----------ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSL 377 (550)
Q Consensus 309 EIek-----------a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~ 377 (550)
|||. ++..+|..|..+++.= . --|. ...+-+|||+|.. ..
T Consensus 233 eiDAigGRr~se~Ts~dreiqrTLMeLlnqm--d-gfd~-----l~rVk~ImatNrp---------------------dt 283 (388)
T KOG0651|consen 233 EIDAIGGRRFSEGTSSDREIQRTLMELLNQM--D-GFDT-----LHRVKTIMATNRP---------------------DT 283 (388)
T ss_pred hhhhhccEEeccccchhHHHHHHHHHHHHhh--c-cchh-----cccccEEEecCCc---------------------cc
Confidence 9984 3568999999988732 2 1122 1334589999976 35
Q ss_pred CChhhh--hhccceeEec
Q 036633 378 FKPSLL--KLLDKLVVID 393 (550)
Q Consensus 378 f~p~ll--~Rid~ii~f~ 393 (550)
+.|+|+ +|+|..+..+
T Consensus 284 LdpaLlRpGRldrk~~iP 301 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIP 301 (388)
T ss_pred cchhhcCCccccceeccC
Confidence 667777 8898777665
No 207
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.12 E-value=8.9e-09 Score=103.67 Aligned_cols=177 Identities=15% Similarity=0.116 Sum_probs=105.5
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe--cCCCCchhh---hhhHHh-------------HHHH----
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD--MGNYTELES---IKHFFD-------------SLAA---- 295 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id--~s~~~~~~~---~s~liG-------------~lt~---- 295 (550)
++.++++||+|+|||++++.++..+.. . .+.... .+.+..... +...+| .+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~---~--~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ---E--RVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC---C--CeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999988753 1 222211 111111100 111111 2222
Q ss_pred HHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhc
Q 036633 296 LVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTG 375 (550)
Q Consensus 296 al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~ 375 (550)
........||++||++.+++..++.|..+.+-. .+++ ..+.|+++..... ...+.
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~-----~~~~-----~~~~vvl~g~~~~---------------~~~l~ 172 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQ-----TDNA-----KLLQIFLVGQPEF---------------RETLQ 172 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcc-----cCCC-----CeEEEEEcCCHHH---------------HHHHc
Confidence 222344469999999999998888776544311 1111 2234566654321 11111
Q ss_pred cCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHH
Q 036633 376 SLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWM 455 (550)
Q Consensus 376 ~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i 455 (550)
..-...+.+|+...+.+. ||+.+++..++...+... .... ...+++++++.|.+.+- | +.|.+....
T Consensus 173 ~~~~~~l~~r~~~~~~l~---~l~~~e~~~~l~~~l~~~-----g~~~-~~~~~~~~~~~i~~~s~---G-~p~~i~~l~ 239 (269)
T TIGR03015 173 SPQLQQLRQRIIASCHLG---PLDREETREYIEHRLERA-----GNRD-APVFSEGAFDAIHRFSR---G-IPRLINILC 239 (269)
T ss_pred CchhHHHHhheeeeeeCC---CCCHHHHHHHHHHHHHHc-----CCCC-CCCcCHHHHHHHHHHcC---C-cccHHHHHH
Confidence 111235778887788899 999999999988887532 1111 24689999999998653 5 667666665
Q ss_pred cc
Q 036633 456 DQ 457 (550)
Q Consensus 456 ~~ 457 (550)
..
T Consensus 240 ~~ 241 (269)
T TIGR03015 240 DR 241 (269)
T ss_pred HH
Confidence 54
No 208
>PRK12377 putative replication protein; Provisional
Probab=99.11 E-value=3.1e-10 Score=112.87 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=92.9
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF 289 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l 289 (550)
||..|+..+...+... . ....+++|+||||||||+||.+|++.+.. ....++.++++++......+.-
T Consensus 82 ~~~~a~~~a~~~a~~~---~------~~~~~l~l~G~~GtGKThLa~AIa~~l~~---~g~~v~~i~~~~l~~~l~~~~~ 149 (248)
T PRK12377 82 GQRYALSQAKSIADEL---M------TGCTNFVFSGKPGTGKNHLAAAIGNRLLA---KGRSVIVVTVPDVMSRLHESYD 149 (248)
T ss_pred hHHHHHHHHHHHHHHH---H------hcCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEEEHHHHHHHHHHHHh
Confidence 6666666555544433 1 12268999999999999999999999976 4456677776655432211100
Q ss_pred Hh-HHHHHHHh-CCCCeEEeccc--cccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhh
Q 036633 290 FD-SLAALVKK-RPYSVVLFDKI--EKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTA 365 (550)
Q Consensus 290 iG-~lt~al~~-~p~~VlllDEI--eka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~ 365 (550)
-+ ...+.++. ....+|+|||+ +..++..++.|+++++.. . . ++.-+|+|||.+.+.+.
T Consensus 150 ~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R--~--~--------~~~ptiitSNl~~~~l~------ 211 (248)
T PRK12377 150 NGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRR--T--A--------SMRSVGMLTNLNHEAMS------ 211 (248)
T ss_pred ccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHH--H--h--------cCCCEEEEcCCCHHHHH------
Confidence 01 11112221 23469999999 667888999999999876 3 1 11226889999876653
Q ss_pred hHhhHHHHhccCCChhhhhhcc----ceeEec
Q 036633 366 TYGRVNEVTGSLFKPSLLKLLD----KLVVID 393 (550)
Q Consensus 366 ~~~~~~~~l~~~f~p~ll~Rid----~ii~f~ 393 (550)
..|+..+++|+- ..|.|.
T Consensus 212 ----------~~~~~ri~dRl~~~~~~~v~~~ 233 (248)
T PRK12377 212 ----------TLLGERVMDRMTMNGGRWVNFN 233 (248)
T ss_pred ----------HHhhHHHHHHHhhCCCeEEEeC
Confidence 356667888883 247776
No 209
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.10 E-value=5.2e-09 Score=109.96 Aligned_cols=184 Identities=19% Similarity=0.253 Sum_probs=123.0
Q ss_pred hhcCcccCcHHHH-HHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCC--ceeEEecC
Q 036633 203 RLKKRVFGQNDAI-DVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDN--HLIHFDMG 278 (550)
Q Consensus 203 ~L~~~viGQ~~ai-~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~--~li~id~s 278 (550)
.+...|+|-.... ..++..+... |.++ .+++|+||+|.|||.|+++++..... ... .++.+...
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~---------~g~~~nplfi~G~~GlGKTHLl~Aign~~~~---~~~~a~v~y~~se 152 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAEN---------PGGAYNPLFIYGGVGLGKTHLLQAIGNEALA---NGPNARVVYLTSE 152 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhc---------cCCcCCcEEEECCCCCCHHHHHHHHHHHHHh---hCCCceEEeccHH
Confidence 3456688876544 3333444433 3346 79999999999999999999998876 332 24444433
Q ss_pred CCCchhhhhhHHhHHHHHHHh---------CCCCeEEeccccccCH--HHHHHHHHh----hhhccccccccCCeEeecC
Q 036633 279 NYTELESIKHFFDSLAALVKK---------RPYSVVLFDKIEKANS--SILNLLLKI----LKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 279 ~~~~~~~~s~liG~lt~al~~---------~p~~VlllDEIeka~~--~v~~~Ll~~----ld~g~~~~l~d~g~~vd~~ 343 (550)
.| +..+..+++. ....+++||+|+-... ..+..|..+ .++| .
T Consensus 153 ~f---------~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~--k------------ 209 (408)
T COG0593 153 DF---------TNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG--K------------ 209 (408)
T ss_pred HH---------HHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC--C------------
Confidence 33 2222333332 1346999999987543 334444444 4444 2
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc--eeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK--LVVIDLAVPLLDTTRLLLREWACEETKRRNNDS 421 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~--ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~ 421 (550)
-||+||...+..+ ..+.|.|.+|+.. ++... |++.+....|+..... ..
T Consensus 210 --qIvltsdr~P~~l-----------------~~~~~rL~SR~~~Gl~~~I~---~Pd~e~r~aiL~kka~-------~~ 260 (408)
T COG0593 210 --QIVLTSDRPPKEL-----------------NGLEDRLRSRLEWGLVVEIE---PPDDETRLAILRKKAE-------DR 260 (408)
T ss_pred --EEEEEcCCCchhh-----------------ccccHHHHHHHhceeEEeeC---CCCHHHHHHHHHHHHH-------hc
Confidence 3788888766554 4567889999976 45566 9999999999887443 25
Q ss_pred CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++ .+++++..+|+..-. . |+|.|..++++
T Consensus 261 ~~---~i~~ev~~~la~~~~---~-nvReLegaL~~ 289 (408)
T COG0593 261 GI---EIPDEVLEFLAKRLD---R-NVRELEGALNR 289 (408)
T ss_pred CC---CCCHHHHHHHHHHhh---c-cHHHHHHHHHH
Confidence 44 899999999998543 3 88999999976
No 210
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.08 E-value=3.1e-09 Score=104.18 Aligned_cols=163 Identities=13% Similarity=0.186 Sum_probs=115.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCC-------------CCCC----------ceeEEecCCCC--chhhhhhHHhHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNN-------------DNDN----------HLIHFDMGNYT--ELESIKHFFDSL 293 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~-------------~~~~----------~li~id~s~~~--~~~~~s~liG~l 293 (550)
.+++|+||+|+||.+.+.+|-+.+||.| .+.+ ..+.++-|++. +..-+..++...
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 5999999999999999999999999944 1111 11122222211 111122222211
Q ss_pred -----HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHh
Q 036633 294 -----AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYG 368 (550)
Q Consensus 294 -----t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~ 368 (550)
.+.-.++++.||+|-|+|++..+.|..|.+.++.- . +|+.+|+.+|.-+
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY--s-----------~~~RlIl~cns~S------------- 168 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKY--S-----------SNCRLILVCNSTS------------- 168 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHH--h-----------cCceEEEEecCcc-------------
Confidence 11112467899999999999999999999999977 5 6788999999754
Q ss_pred hHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcc
Q 036633 369 RVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNG 448 (550)
Q Consensus 369 ~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~ 448 (550)
..-+++.+|| -.|..+ ..+.+|+..++...+.+ .|+ .+..+.+..|++.+.
T Consensus 169 --------riIepIrSRC-l~iRvp---aps~eeI~~vl~~v~~k-------E~l---~lp~~~l~rIa~kS~------- 219 (351)
T KOG2035|consen 169 --------RIIEPIRSRC-LFIRVP---APSDEEITSVLSKVLKK-------EGL---QLPKELLKRIAEKSN------- 219 (351)
T ss_pred --------cchhHHhhhe-eEEeCC---CCCHHHHHHHHHHHHHH-------hcc---cCcHHHHHHHHHHhc-------
Confidence 3446699999 677777 88999999999888854 544 677999999998542
Q ss_pred cHHHHHHc
Q 036633 449 EGLKRWMD 456 (550)
Q Consensus 449 R~L~~~i~ 456 (550)
|.|++.+=
T Consensus 220 ~nLRrAll 227 (351)
T KOG2035|consen 220 RNLRRALL 227 (351)
T ss_pred ccHHHHHH
Confidence 55667664
No 211
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.2e-09 Score=111.47 Aligned_cols=191 Identities=16% Similarity=0.152 Sum_probs=130.9
Q ss_pred hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCc-eeEEecCCCC
Q 036633 203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNH-LIHFDMGNYT 281 (550)
Q Consensus 203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~-li~id~s~~~ 281 (550)
.+.+.+.+.+.-+.++...+.-. . +...|.+++++||||||||.+++.+.+.+... .... .+.+||-.+.
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~---~----~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~--~~~~~~~yINc~~~~ 84 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPA---L----RGERPSNIIIYGPTGTGKTATVKFVMEELEES--SANVEVVYINCLELR 84 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHH---h----cCCCCccEEEECCCCCCHhHHHHHHHHHHHhh--hccCceEEEeeeeCC
Confidence 44556888888888888887766 2 23367679999999999999999999999761 2223 7999999998
Q ss_pred chhhhh-hHH---------h--------HHHHHHHh-CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 282 ELESIK-HFF---------D--------SLAALVKK-RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 282 ~~~~~s-~li---------G--------~lt~al~~-~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
....+- .++ | .+.+.+.. ...-||+|||++.+-..-.+.|+.++.-+ . - + -
T Consensus 85 t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~--~-~---~----~ 154 (366)
T COG1474 85 TPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAP--G-E---N----K 154 (366)
T ss_pred CHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhc--c-c---c----c
Confidence 765532 111 1 33344443 34458999999988776557888777554 3 1 1 2
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc-ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD-KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS 421 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid-~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~ 421 (550)
.++.+|+.+|--.- ...|.|-+.+++. ..|.|+ |++.+++..|+....+.- + .
T Consensus 155 ~~v~vi~i~n~~~~------------------~~~ld~rv~s~l~~~~I~F~---pY~a~el~~Il~~R~~~~---~--~ 208 (366)
T COG1474 155 VKVSIIAVSNDDKF------------------LDYLDPRVKSSLGPSEIVFP---PYTAEELYDILRERVEEG---F--S 208 (366)
T ss_pred eeEEEEEEeccHHH------------------HHHhhhhhhhccCcceeeeC---CCCHHHHHHHHHHHHHhh---c--c
Confidence 44567787774210 1344555555552 358999 999999999999877531 1 1
Q ss_pred CCccccCCHHHHHHHHhcCc
Q 036633 422 KAVIVCPSTSALVHIASNAA 441 (550)
Q Consensus 422 ~~~~l~~~~~a~~~L~~~~~ 441 (550)
.-.+++++++.++....
T Consensus 209 ---~~~~~~~vl~lia~~~a 225 (366)
T COG1474 209 ---AGVIDDDVLKLIAALVA 225 (366)
T ss_pred ---CCCcCccHHHHHHHHHH
Confidence 23589999999987544
No 212
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=2.7e-09 Score=118.59 Aligned_cols=210 Identities=11% Similarity=0.184 Sum_probs=116.2
Q ss_pred HhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE----
Q 036633 200 VQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH---- 274 (550)
Q Consensus 200 l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~---- 274 (550)
....--..++||++.+..|..++... .. +..| ..++|+||||+|||++++++|+.+.. .++.
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~---~~----~~~~~~illL~GP~GsGKTTl~~~la~~l~~------~~~Ew~np 144 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQ---VL----ENAPKRILLITGPSGCGKSTTIKILSKELGI------QVQEWSNP 144 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhc---cc----ccCCCcEEEEECCCCCCHHHHHHHHHHHhhh------HHHHHhhh
Confidence 33344467999999999988888755 21 2344 57999999999999999999998754 2111
Q ss_pred EecCCCCchh--------------hhhhHHhHHHHHHH----------hCCCCeEEecccc----ccCHHHHHHHH-Hhh
Q 036633 275 FDMGNYTELE--------------SIKHFFDSLAALVK----------KRPYSVVLFDKIE----KANSSILNLLL-KIL 325 (550)
Q Consensus 275 id~s~~~~~~--------------~~s~liG~lt~al~----------~~p~~VlllDEIe----ka~~~v~~~Ll-~~l 325 (550)
++|......+ +...-+..+..... .....||||||++ .....++++|+ ...
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~ 224 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYV 224 (637)
T ss_pred hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhh
Confidence 1111111100 11111111111111 1234699999994 44445555555 455
Q ss_pred hhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHH
Q 036633 326 KTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTR 403 (550)
Q Consensus 326 d~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i 403 (550)
+.| + + .+|+++|......-+. ....-.....++|++++ |+ .+|.|+ |++...+
T Consensus 225 e~~--~-~-----------pLI~I~TE~~~~~~~~-------~~~~f~~~~lL~~eLls~~rv-~~I~Fn---Pia~t~l 279 (637)
T TIGR00602 225 SIG--R-C-----------PLVFIITESLEGDNNQ-------RRLLFPAETIMNKEILEEPRV-SNISFN---PIAPTIM 279 (637)
T ss_pred cCC--C-c-----------eEEEEecCCccccccc-------cccccchhcccCHhHhcccce-eEEEeC---CCCHHHH
Confidence 555 3 1 2334344221100000 00000001223489997 67 589999 9999999
Q ss_pred HHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 404 LLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 404 ~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+.+...+..-...+...+ ...++++++.|+..+- | ++|++|..
T Consensus 280 ~K~L~rIl~~E~~~~~~~~---~~p~~~~l~~I~~~s~---G----DiRsAIn~ 323 (637)
T TIGR00602 280 KKFLNRIVTIEAKKNGEKI---KVPKKTSVELLCQGCS---G----DIRSAINS 323 (637)
T ss_pred HHHHHHHHHhhhhcccccc---ccCCHHHHHHHHHhCC---C----hHHHHHHH
Confidence 9999988865322211111 1236788888887432 3 35566653
No 213
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=3.1e-09 Score=110.00 Aligned_cols=134 Identities=18% Similarity=0.184 Sum_probs=91.6
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCC-------------------CCCCceeEEecCCCC-chhhhhhHHh-----
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNN-------------------DNDNHLIHFDMGNYT-ELESIKHFFD----- 291 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-------------------~~~~~li~id~s~~~-~~~~~s~liG----- 291 (550)
-|.++||+||+|+|||++|+.+|+.+.... .++..|+.++...-. +...-+.-|+
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 448999999999999999999999987411 112234445432100 0000001122
Q ss_pred HHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhH
Q 036633 292 SLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATY 367 (550)
Q Consensus 292 ~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~ 367 (550)
.+.+.+..+| +.|+++|+++.+++..++.|++.+++. . .+++||++|+..
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep--~-----------~~~~~Ilvth~~------------- 153 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP--P-----------PQVVFLLVSHAA------------- 153 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC--c-----------CCCEEEEEeCCh-------------
Confidence 4445555444 569999999999999999999999987 4 345566666542
Q ss_pred hhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633 368 GRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE 408 (550)
Q Consensus 368 ~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~ 408 (550)
....|.+.+|| .++.|. |++.+++...+.
T Consensus 154 --------~~ll~ti~SRc-~~~~~~---~~~~~~~~~~L~ 182 (325)
T PRK08699 154 --------DKVLPTIKSRC-RKMVLP---APSHEEALAYLR 182 (325)
T ss_pred --------HhChHHHHHHh-hhhcCC---CCCHHHHHHHHH
Confidence 24557799999 899999 999988776654
No 214
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.04 E-value=4.8e-09 Score=114.36 Aligned_cols=173 Identities=18% Similarity=0.323 Sum_probs=115.0
Q ss_pred CCCcCCC--eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhH--HHHHHH---hCCCCe
Q 036633 232 LSSRRQL--GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS--LAALVK---KRPYSV 304 (550)
Q Consensus 232 l~~~~~p--~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~--lt~al~---~~p~~V 304 (550)
+....+| ..+||+||||-|||+||..||+..+- .++.||.|+-...+.+..-|-. .+..+- .+| ..
T Consensus 318 ~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGY------sVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP-~C 390 (877)
T KOG1969|consen 318 LDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGY------SVVEINASDERTAPMVKEKIENAVQNHSVLDADSRP-VC 390 (877)
T ss_pred cCccCCCccceEEeecCCCCChhHHHHHHHHhcCc------eEEEecccccccHHHHHHHHHHHHhhccccccCCCc-ce
Confidence 3344567 89999999999999999999999766 8999999988777766543331 111111 356 57
Q ss_pred EEeccccccCHHHHHHHHHhhhhccccccccC--CeEe---------ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHH
Q 036633 305 VLFDKIEKANSSILNLLLKILKTDFNRKATRG--IAAF---------DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEV 373 (550)
Q Consensus 305 lllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~--g~~v---------d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~ 373 (550)
|++||||-+++...+.++.++... ....-+ +... -+.+- |||.||
T Consensus 391 LViDEIDGa~~~~Vdvilslv~a~--~k~~~Gkq~~~~~~rkkkr~~~L~RP-IICICN--------------------- 446 (877)
T KOG1969|consen 391 LVIDEIDGAPRAAVDVILSLVKAT--NKQATGKQAKKDKKRKKKRSKLLTRP-IICICN--------------------- 446 (877)
T ss_pred EEEecccCCcHHHHHHHHHHHHhh--cchhhcCcccchhhhhhhccccccCC-EEEEec---------------------
Confidence 899999999999999999998732 101111 1100 12222 556666
Q ss_pred hccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHH
Q 036633 374 TGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGL 451 (550)
Q Consensus 374 l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L 451 (550)
..|-|+|. .-+-.+|.|. |.+...+.+-++..+ ...|+ .++..++..|++.+. -++
T Consensus 447 --dLYaPaLR~Lr~~A~ii~f~---~p~~s~Lv~RL~~IC-------~rE~m---r~d~~aL~~L~el~~-------~DI 504 (877)
T KOG1969|consen 447 --DLYAPALRPLRPFAEIIAFV---PPSQSRLVERLNEIC-------HRENM---RADSKALNALCELTQ-------NDI 504 (877)
T ss_pred --CccchhhhhcccceEEEEec---CCChhHHHHHHHHHH-------hhhcC---CCCHHHHHHHHHHhc-------chH
Confidence 35566654 3344799999 667666653333333 33555 889999999998653 346
Q ss_pred HHHHcc
Q 036633 452 KRWMDQ 457 (550)
Q Consensus 452 ~~~i~~ 457 (550)
+.+|+.
T Consensus 505 RsCINt 510 (877)
T KOG1969|consen 505 RSCINT 510 (877)
T ss_pred HHHHHH
Confidence 667764
No 215
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=4.8e-09 Score=106.04 Aligned_cols=130 Identities=13% Similarity=0.240 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----------CCCCceeEEecCCCCc
Q 036633 213 DAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----------DNDNHLIHFDMGNYTE 282 (550)
Q Consensus 213 ~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----------~~~~~li~id~s~~~~ 282 (550)
.+.+.+..++... .-|..+||+||+|+||+.+|..+|+.++..+ ..+..+..+.-..-
T Consensus 4 ~~~~~L~~~i~~~----------rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-- 71 (290)
T PRK05917 4 AAWEALIQRVRDQ----------KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-- 71 (290)
T ss_pred HHHHHHHHHHHcC----------CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC--
Confidence 3455666666654 1348999999999999999999999998621 01112222211000
Q ss_pred hhhhhhHHh-----HHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCC
Q 036633 283 LESIKHFFD-----SLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 283 ~~~~s~liG-----~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~ 353 (550)
+..++ .+.+.+..+| +.|++||++|+++++.+|.||+.||+. . .+++||++|+.
T Consensus 72 ----~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEP--p-----------~~~~fiL~~~~ 134 (290)
T PRK05917 72 ----GRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDP--P-----------QHGVIILTSAK 134 (290)
T ss_pred ----CCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcC--C-----------CCeEEEEEeCC
Confidence 01122 3444444444 569999999999999999999999998 6 67888888775
Q ss_pred ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633 354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID 393 (550)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~ 393 (550)
. ..+.|.++||| ..+.|.
T Consensus 135 ~---------------------~~ll~TI~SRc-q~~~~~ 152 (290)
T PRK05917 135 P---------------------QRLPPTIRSRS-LSIHIP 152 (290)
T ss_pred h---------------------hhCcHHHHhcc-eEEEcc
Confidence 3 46678899999 899999
No 216
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.01 E-value=1.3e-08 Score=99.70 Aligned_cols=201 Identities=20% Similarity=0.254 Sum_probs=129.6
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
+.++|-+..++.+....... -.| .| .++|++|+.|||||++++++...+.. ..=.+|.++-..+.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~F---l~G-----~pannvLL~G~rGtGKSSlVkall~~y~~---~GLRlIev~k~~L~--- 92 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQF---LQG-----LPANNVLLWGARGTGKSSLVKALLNEYAD---QGLRLIEVSKEDLG--- 92 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHH---HcC-----CCCcceEEecCCCCCHHHHHHHHHHHHhh---cCceEEEECHHHhc---
Confidence 45788888888888877766 333 46 89999999999999999999998866 33345555433221
Q ss_pred hhhhHHhHHHHHHHhCCCC-eEEeccccc-cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCC---hHHHH
Q 036633 285 SIKHFFDSLAALVKKRPYS-VVLFDKIEK-ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLK---DEQVY 359 (550)
Q Consensus 285 ~~s~liG~lt~al~~~p~~-VlllDEIek-a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g---~~~~~ 359 (550)
. +..+.+.++..|+. |||+|++-= ....-...|-.+||.| +. ---.|++|.+|||.- .+...
T Consensus 93 ~----l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGg----le-----~~P~NvliyATSNRRHLv~E~~~ 159 (249)
T PF05673_consen 93 D----LPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGG----LE-----ARPDNVLIYATSNRRHLVPESFS 159 (249)
T ss_pred c----HHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCc----cc-----cCCCcEEEEEecchhhccchhhh
Confidence 1 22566777777754 889998742 2344567777777766 21 124789999999962 12111
Q ss_pred Hhhh---hh--hHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCH----
Q 036633 360 EVML---TA--TYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPST---- 430 (550)
Q Consensus 360 ~~~~---~~--~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~---- 430 (550)
+... ++ ..+.+.+.+ .|..||.-.|.|. |++.++..+|+...+.+ .|+ .+++
T Consensus 160 d~~~~~~~eih~~d~~eEkl------SLsDRFGL~l~F~---~~~q~~YL~IV~~~~~~-------~g~---~~~~e~l~ 220 (249)
T PF05673_consen 160 DREDIQDDEIHPSDTIEEKL------SLSDRFGLWLSFY---PPDQEEYLAIVRHYAER-------YGL---ELDEEELR 220 (249)
T ss_pred hccCCCccccCcchHHHHHH------hHHHhCCcEEEec---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHH
Confidence 1100 00 012222222 4789999999999 99999999999998854 555 5553
Q ss_pred -HHHHHHHhcCcccCCCcccHHHHHHc
Q 036633 431 -SALVHIASNAARKYGQNGEGLKRWMD 456 (550)
Q Consensus 431 -~a~~~L~~~~~~~~GaN~R~L~~~i~ 456 (550)
+|+.|-..++ |-+||--+.++.
T Consensus 221 ~~Al~wa~~rg----~RSGRtA~QF~~ 243 (249)
T PF05673_consen 221 QEALQWALRRG----GRSGRTARQFID 243 (249)
T ss_pred HHHHHHHHHcC----CCCHHHHHHHHH
Confidence 4444444332 335576665554
No 217
>PRK06526 transposase; Provisional
Probab=99.01 E-value=5e-10 Score=111.97 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=72.3
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHh-CCCCeEEecccccc--C
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKK-RPYSVVLFDKIEKA--N 314 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~-~p~~VlllDEIeka--~ 314 (550)
+.+++|+||||||||++|.+|+..+.. .......+.++++.+....+...|.+...+.. ..+.+|+|||++.. +
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~---~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~ 174 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ---AGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFE 174 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH---CCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCC
Confidence 358999999999999999999988765 33344445555443333222222233333332 34579999999976 4
Q ss_pred HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 315 SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 315 ~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
+..++.|+++++.. . .+.-+|+|||.+......
T Consensus 175 ~~~~~~L~~li~~r--~-----------~~~s~IitSn~~~~~w~~ 207 (254)
T PRK06526 175 PEAANLFFQLVSSR--Y-----------ERASLIVTSNKPFGRWGE 207 (254)
T ss_pred HHHHHHHHHHHHHH--H-----------hcCCEEEEcCCCHHHHHH
Confidence 78888999999765 3 122378999998877654
No 218
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.9e-09 Score=110.20 Aligned_cols=198 Identities=21% Similarity=0.224 Sum_probs=124.5
Q ss_pred HHhhhhcCcccCcHHHHHHHHHHHhcchh---hhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE
Q 036633 199 RVQGRLKKRVFGQNDAIDVIFEALTKPKA---AKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH 274 (550)
Q Consensus 199 ~l~~~L~~~viGQ~~ai~~i~~~l~~~~~---~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~ 274 (550)
+.....-..+-|.+.|.+.+..++..... ...|+ ..| ..+|+.||||+|||.++++||-.+.. .|.-
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl---r~p~rglLLfGPpgtGKtmL~~aiAsE~~a------tff~ 216 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL---REPVRGLLLFGPPGTGKTMLAKAIATESGA------TFFN 216 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc---ccccchhheecCCCCchHHHHHHHHhhhcc------eEee
Confidence 33444556789999999998888876521 12233 345 79999999999999999999988766 6665
Q ss_pred EecCCCCchhhhhhHHh-------HHHHHHHhCCCCeEEecccccc-----------CHHHHH-HHHHhhhhcccccccc
Q 036633 275 FDMGNYTELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA-----------NSSILN-LLLKILKTDFNRKATR 335 (550)
Q Consensus 275 id~s~~~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka-----------~~~v~~-~Ll~~ld~g~~~~l~d 335 (550)
+..|.+ .++.+| .+-...+....+|+|+||||+. ++.... .|+|.. .+ . .
T Consensus 217 iSassL-----tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~-~~--~---s 285 (428)
T KOG0740|consen 217 ISASSL-----TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFD-GK--N---S 285 (428)
T ss_pred ccHHHh-----hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhc-cc--c---C
Confidence 555544 344455 3333334445589999999753 233333 333333 22 1 1
Q ss_pred CCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHH
Q 036633 336 GIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETK 415 (550)
Q Consensus 336 ~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~ 415 (550)
.+. .++++|.|||.+-+ .+.+++.|+..++.++ ..+.+....++...|.+
T Consensus 286 ~~~----drvlvigaTN~P~e---------------------~Dea~~Rrf~kr~yip---lPd~etr~~~~~~ll~~-- 335 (428)
T KOG0740|consen 286 APD----DRVLVIGATNRPWE---------------------LDEAARRRFVKRLYIP---LPDYETRSLLWKQLLKE-- 335 (428)
T ss_pred CCC----CeEEEEecCCCchH---------------------HHHHHHHHhhceeeec---CCCHHHHHHHHHHHHHh--
Confidence 111 26789999998632 2345666886666776 67888888888888855
Q ss_pred HHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 416 RRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 416 ~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++. .+++..++.|++..- .| ++-++...+..
T Consensus 336 -----~~~---~l~~~d~~~l~~~Te-gy--sgsdi~~l~ke 366 (428)
T KOG0740|consen 336 -----QPN---GLSDLDISLLAKVTE-GY--SGSDITALCKE 366 (428)
T ss_pred -----CCC---CccHHHHHHHHHHhc-Cc--ccccHHHHHHH
Confidence 222 456677777776321 11 22445555544
No 219
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=99.00 E-value=2.8e-10 Score=93.56 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCC
Q 036633 398 LLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAG 473 (550)
Q Consensus 398 L~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~ 473 (550)
|+.+++..|+...|.++.+++..+|+ ++.+++++.++|++.|| +.+|| |+|+++|++ +|+++.++.|.+.+++
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~~~~i-~l~~~~~~~~~l~~~~~~~~~GA--R~l~r~i~~~i~~~la~~il~~~~~~g~ 77 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLKEKGI-ELEFDDAVVDYLAEKGYDPEYGA--RPLRRIIEREIEPPLADAILSGKIKEGD 77 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHHHTTE-EEEE-HHHHHHHHHHHHHTTTTT--TCHHHHHHHHHHHHHHHHHHHSCSCTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCC-eEEecHHHHHHHHHhCcccCCCH--HHHHHHHHHHHHHHHHHHHHcCCCCCcC
Confidence 67899999999999999999999999 99999999999999999 99999 999999999 9999999999988876
Q ss_pred ccc
Q 036633 474 YNH 476 (550)
Q Consensus 474 ~~~ 476 (550)
.++
T Consensus 78 ~v~ 80 (81)
T PF10431_consen 78 TVR 80 (81)
T ss_dssp EEE
T ss_pred Eee
Confidence 654
No 220
>PRK08116 hypothetical protein; Validated
Probab=99.00 E-value=3.8e-09 Score=106.63 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=82.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhh------hHHhHHHHHHHhCCCCeEEeccc--
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK------HFFDSLAALVKKRPYSVVLFDKI-- 310 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s------~liG~lt~al~~~p~~VlllDEI-- 310 (550)
..++|+||+|||||+||.++++.+.. ...+++.++++++......+ .-...+.+.+. ...+|+||++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~---~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~ 189 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE---KGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGA 189 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccC
Confidence 46999999999999999999999876 45577888876653221100 00002222333 3469999999
Q ss_pred cccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc---
Q 036633 311 EKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--- 387 (550)
Q Consensus 311 eka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--- 387 (550)
++.++..+..|+.+++.. . . .+..+|+|||.....+.. .+.+.+++|+-
T Consensus 190 e~~t~~~~~~l~~iin~r--~--~--------~~~~~IiTsN~~~~eL~~----------------~~~~ri~sRl~e~~ 241 (268)
T PRK08116 190 ERDTEWAREKVYNIIDSR--Y--R--------KGLPTIVTTNLSLEELKN----------------QYGKRIYDRILEMC 241 (268)
T ss_pred CCCCHHHHHHHHHHHHHH--H--H--------CCCCEEEECCCCHHHHHH----------------HHhHHHHHHHHHcC
Confidence 667888899999999865 2 1 122389999998766533 35567788862
Q ss_pred ceeEec
Q 036633 388 KLVVID 393 (550)
Q Consensus 388 ~ii~f~ 393 (550)
..|.|.
T Consensus 242 ~~v~~~ 247 (268)
T PRK08116 242 TPVENE 247 (268)
T ss_pred EEEEee
Confidence 345565
No 221
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=6.4e-09 Score=105.42 Aligned_cols=147 Identities=14% Similarity=0.221 Sum_probs=100.7
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCc------eeEEecCCCCc
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDN-DNH------LIHFDMGNYTE 282 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~------li~id~s~~~~ 282 (550)
+|..+++.+..++... + -|..+||+|| +||+++|+.+|+.+...+.. ..+ ..+++.+.+++
T Consensus 6 ~q~~~~~~L~~~~~~~---r-------l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 6 KQPKVFQRFQTILEQD---R-------LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHHHcC---C-------cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 5788888888888766 1 2389999996 68999999999999862210 001 11122222222
Q ss_pred hhhh---hhHHh-----HHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEe
Q 036633 283 LESI---KHFFD-----SLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMT 350 (550)
Q Consensus 283 ~~~~---s~liG-----~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~T 350 (550)
-+.+ ...|+ .+...+... ++.|++||++|+++++..|.||+.+|+. . .+++||++
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEP--p-----------~~t~~iL~ 140 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEP--Q-----------SEIYIFLL 140 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCC--C-----------CCeEEEEE
Confidence 2111 11222 344444443 4579999999999999999999999998 6 67888888
Q ss_pred CCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHH
Q 036633 351 SDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLR 407 (550)
Q Consensus 351 sN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~ 407 (550)
|+.. ..+-|-++||| ++|.|. + +.+++..++
T Consensus 141 t~~~---------------------~~lLpTI~SRc-q~i~f~---~-~~~~~~~~L 171 (290)
T PRK07276 141 TNDE---------------------NKVLPTIKSRT-QIFHFP---K-NEAYLIQLL 171 (290)
T ss_pred ECCh---------------------hhCchHHHHcc-eeeeCC---C-cHHHHHHHH
Confidence 7653 35667799999 899998 7 666655544
No 222
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=8.5e-09 Score=117.65 Aligned_cols=195 Identities=20% Similarity=0.238 Sum_probs=126.4
Q ss_pred CcccCcHHHHHHHHHHHhcchh---h--hcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA---A--KKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~---~--~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
..|=|-+..+..+-+.+...+. . ..++ ..|.-+||+||||||||.+|+++|..+.. .+..+ .+.|..-
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i---tpPrgvL~~GppGTGkTl~araLa~~~s~---~~~ki-sffmrkg 337 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNI---TPPRGVLFHGPPGTGKTLMARALAAACSR---GNRKI-SFFMRKG 337 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhccc---CCCcceeecCCCCCchhHHHHhhhhhhcc---ccccc-chhhhcC
Confidence 3466777788777777655411 0 1112 23367999999999999999999999876 44322 2222211
Q ss_pred CchhhhhhHHh-------HHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 281 TELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 281 ~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
..-.++++| .+-+..+++..+|+|||||+-+ |.++...||-+|+.= ++ .
T Consensus 338 --aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGl------ds-----R 404 (1080)
T KOG0732|consen 338 --ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGL------DS-----R 404 (1080)
T ss_pred --chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCC------CC-----C
Confidence 122566777 3333344455599999999844 457888899888633 11 1
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhh--hhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSL--LKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND 420 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~l--l~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~ 420 (550)
..+++|-+||.. ....|++ -.|+|..+.|. -.+.++..+|+..+=
T Consensus 405 gqVvvigATnRp---------------------da~dpaLRRPgrfdref~f~---lp~~~ar~~Il~Iht--------- 451 (1080)
T KOG0732|consen 405 GQVVVIGATNRP---------------------DAIDPALRRPGRFDREFYFP---LPDVDARAKILDIHT--------- 451 (1080)
T ss_pred CceEEEcccCCc---------------------cccchhhcCCcccceeEeee---CCchHHHHHHHHHhc---------
Confidence 445689999975 4677888 49999999998 556666777766433
Q ss_pred CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
... .-.++.....+|++.+ +.||. ..|+-+...
T Consensus 452 rkw-~~~i~~~l~~~la~~t-~gy~g--aDlkaLCTe 484 (1080)
T KOG0732|consen 452 RKW-EPPISRELLLWLAEET-SGYGG--ADLKALCTE 484 (1080)
T ss_pred cCC-CCCCCHHHHHHHHHhc-cccch--HHHHHHHHH
Confidence 222 3346777888888754 34454 667766654
No 223
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.94 E-value=8.7e-10 Score=104.49 Aligned_cols=120 Identities=21% Similarity=0.264 Sum_probs=69.6
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh---HHHHHHHhCCCCeEEecccccc-
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD---SLAALVKKRPYSVVLFDKIEKA- 313 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG---~lt~al~~~p~~VlllDEIeka- 313 (550)
+.+++|+||||||||++|.+++..+.. ...+...++++++.+....+.--+ .+...+.+. .+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~--dlLilDDlG~~~ 121 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV--DLLILDDLGYEP 121 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS--SCEEEETCTSS-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEeecCceeccccccccccchhhhcCccccc--cEecccccceee
Confidence 368999999999999999999998877 556777787766543322111111 334444443 59999999765
Q ss_pred -CHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhc
Q 036633 314 -NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLL 386 (550)
Q Consensus 314 -~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Ri 386 (550)
++...+.|+++++.. . .+.-+|+|||.....+.+..++ +....++++|+
T Consensus 122 ~~~~~~~~l~~ii~~R--~-----------~~~~tIiTSN~~~~~l~~~~~d-----------~~~a~aildRl 171 (178)
T PF01695_consen 122 LSEWEAELLFEIIDER--Y-----------ERKPTIITSNLSPSELEEVLGD-----------RALAEAILDRL 171 (178)
T ss_dssp --HHHHHCTHHHHHHH--H-----------HT-EEEEEESS-HHHHHT--------------------------
T ss_pred ecccccccchhhhhHh--h-----------cccCeEeeCCCchhhHhhcccc-----------ccccccccccc
Confidence 466788899999876 3 1123677999988776553322 23345667776
No 224
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.93 E-value=5.7e-09 Score=103.56 Aligned_cols=142 Identities=16% Similarity=0.220 Sum_probs=90.7
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhh-
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKH- 288 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~- 288 (550)
||..|+..+...+... . .....++|+||||||||+||.+|+..+.. ...+++.++++++......+.
T Consensus 80 ~q~~al~~a~~~~~~~---~------~~~~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it~~~l~~~l~~~~~ 147 (244)
T PRK07952 80 GQMNALSKARQYVEEF---D------GNIASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIITVADIMSAMKDTFS 147 (244)
T ss_pred hHHHHHHHHHHHHHhh---c------cCCceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEHHHHHHHHHHHHh
Confidence 4555666655554432 1 11258999999999999999999999976 455777777766542111100
Q ss_pred ----HHhHHHHHHHhCCCCeEEeccccccCH--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633 289 ----FFDSLAALVKKRPYSVVLFDKIEKANS--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM 362 (550)
Q Consensus 289 ----liG~lt~al~~~p~~VlllDEIeka~~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~ 362 (550)
-...+.+.+. ...+|+|||++.... -....|.++++.. . . .+.-+|+|||...+.+.
T Consensus 148 ~~~~~~~~~l~~l~--~~dlLvIDDig~~~~s~~~~~~l~~Ii~~R--y--~--------~~~~tiitSNl~~~~l~--- 210 (244)
T PRK07952 148 NSETSEEQLLNDLS--NVDLLVIDEIGVQTESRYEKVIINQIVDRR--S--S--------SKRPTGMLTNSNMEEMT--- 210 (244)
T ss_pred hccccHHHHHHHhc--cCCEEEEeCCCCCCCCHHHHHHHHHHHHHH--H--h--------CCCCEEEeCCCCHHHHH---
Confidence 0001222222 357999999977643 3566888999765 2 1 12337899999876663
Q ss_pred hhhhHhhHHHHhccCCChhhhhhcc----ceeEec
Q 036633 363 LTATYGRVNEVTGSLFKPSLLKLLD----KLVVID 393 (550)
Q Consensus 363 ~~~~~~~~~~~l~~~f~p~ll~Rid----~ii~f~ 393 (550)
..|+..+++|+- .+|.|.
T Consensus 211 -------------~~~g~ri~sRl~~~~~~~i~f~ 232 (244)
T PRK07952 211 -------------KLLGERVMDRMRLGNSLWVIFN 232 (244)
T ss_pred -------------HHhChHHHHHHHHCCceEEEee
Confidence 356677888882 367777
No 225
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.92 E-value=6.1e-09 Score=112.71 Aligned_cols=198 Identities=18% Similarity=0.218 Sum_probs=122.3
Q ss_pred cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccC------------CCCCCceeE
Q 036633 207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDN------------NDNDNHLIH 274 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~------------~~~~~~li~ 274 (550)
.++|+++++.+|+..+..+ ..|+..+ ..+++|+||||+|||+||+.|++.+-.. -..+.|+.-
T Consensus 77 d~yGlee~ieriv~~l~~A---a~gl~~~--~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL~L 151 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHA---AQGLEEK--KQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPLGL 151 (644)
T ss_pred cccCcHHHHHHHHHHHHHH---HHhcCCC--CceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCCCC
Confidence 5899999999999999887 6777432 2699999999999999999999987431 001112111
Q ss_pred Ee-----------------------------------------------cCCCC------------chhhhhhHHh----
Q 036633 275 FD-----------------------------------------------MGNYT------------ELESIKHFFD---- 291 (550)
Q Consensus 275 id-----------------------------------------------~s~~~------------~~~~~s~liG---- 291 (550)
|+ .|... .+.+.+.|.|
T Consensus 152 ~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~vdi 231 (644)
T PRK15455 152 FDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGKVDI 231 (644)
T ss_pred CChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhccceeH
Confidence 11 00000 0011223333
Q ss_pred --------------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc--CCeEeecCCeEEEEeCCCCh
Q 036633 292 --------------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR--GIAAFDLTNTLIIMTSDLKD 355 (550)
Q Consensus 292 --------------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d--~g~~vd~~~~iiI~TsN~g~ 355 (550)
.+.+++.....|++=|=|+-|++.+++..||.+.++| . +.. +.-.++|. .+||..||-.
T Consensus 232 ~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~--~-i~~~~~~~~i~~D-~vIiaHsNE~- 306 (644)
T PRK15455 232 RKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEG--N-YNGTEGIGAIPFD-GIILAHSNES- 306 (644)
T ss_pred HhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccC--c-ccCCCCcceeccc-eeEEecCCHH-
Confidence 2223333333467777799999999999999999999 6 533 23456664 6788999842
Q ss_pred HHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCC-CHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHH
Q 036633 356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPL-LDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALV 434 (550)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL-~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~ 434 (550)
....-....+.++|++|+ .+|.++ -. .-.+=.+|-+..+.. ..+....+.|.+++
T Consensus 307 -------------E~~~F~~nk~nEA~~DRi-~~V~VP---Y~lr~~eE~kIYeKll~~-------s~l~~~hiAPhtle 362 (644)
T PRK15455 307 -------------EWQTFRNNKNNEAFLDRI-YIVKVP---YCLRVSEEIKIYEKLLRN-------SELAHAPCAPGTLE 362 (644)
T ss_pred -------------HHHHHhcCccchhhhceE-EEEeCC---ccCChhHHHHHHHHHhcC-------ccccCCCcCccHHH
Confidence 222333467789999999 666654 22 224445555555532 11112355666655
Q ss_pred HHHh
Q 036633 435 HIAS 438 (550)
Q Consensus 435 ~L~~ 438 (550)
.++.
T Consensus 363 ~aA~ 366 (644)
T PRK15455 363 MLAR 366 (644)
T ss_pred HHHH
Confidence 5554
No 226
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.9e-08 Score=112.66 Aligned_cols=176 Identities=17% Similarity=0.224 Sum_probs=126.7
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCC
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNY 280 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~ 280 (550)
-.-|||.++-+.++...+.|. +..+=+|+|+||||||.++.-||...-... ..+..++.+||+.+
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR-----------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L 237 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRR-----------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL 237 (786)
T ss_pred CCCCcChHHHHHHHHHHHhcc-----------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH
Confidence 356999999999999999876 223448889999999999999999886522 34567888999877
Q ss_pred CchhhhhhHHh-------HHHHHHHhCCCCeEEecccccc---------CHHHHHHHHHhhhhccccccccCCeEeecCC
Q 036633 281 TELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA---------NSSILNLLLKILKTDFNRKATRGIAAFDLTN 344 (550)
Q Consensus 281 ~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka---------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~ 344 (550)
.... +.-| .+.+.+.+.+.-|+||||||.. .-+.-|+|-+.|..|+++
T Consensus 238 vAGa---kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~------------- 301 (786)
T COG0542 238 VAGA---KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR------------- 301 (786)
T ss_pred hccc---cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeE-------------
Confidence 5332 2344 4455566677789999999842 256899999999999333
Q ss_pred eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc-C
Q 036633 345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND-S 421 (550)
Q Consensus 345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~-~ 421 (550)
+|-+|+.. ..+++| +++|-.|| +.|... ..+.++-..|++-.- .++.. +
T Consensus 302 --~IGATT~~------------------EYRk~iEKD~AL~RRF-Q~V~V~---EPs~e~ti~ILrGlk----~~yE~hH 353 (786)
T COG0542 302 --CIGATTLD------------------EYRKYIEKDAALERRF-QKVLVD---EPSVEDTIAILRGLK----ERYEAHH 353 (786)
T ss_pred --EEEeccHH------------------HHHHHhhhchHHHhcC-ceeeCC---CCCHHHHHHHHHHHH----HHHHHcc
Confidence 45544431 112455 78899999 788888 889888887766533 34433 4
Q ss_pred CCccccCCHHHHHHHHh
Q 036633 422 KAVIVCPSTSALVHIAS 438 (550)
Q Consensus 422 ~~~~l~~~~~a~~~L~~ 438 (550)
+ +.++++|+..-+.
T Consensus 354 ~---V~i~D~Al~aAv~ 367 (786)
T COG0542 354 G---VRITDEALVAAVT 367 (786)
T ss_pred C---ceecHHHHHHHHH
Confidence 3 4888888776665
No 227
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.88 E-value=1.7e-08 Score=99.90 Aligned_cols=102 Identities=17% Similarity=0.238 Sum_probs=80.4
Q ss_pred CeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhh
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSL 382 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~l 382 (550)
+|+|+||++-++-+.+..|-+.+++. - -.++||+||.|-+.+..-. +. --..++-+|
T Consensus 290 GVLFIDEvHMLDIEcFsFlNrAlE~d--~------------~PiiimaTNrgit~iRGTn----~~-----SphGiP~D~ 346 (454)
T KOG2680|consen 290 GVLFIDEVHMLDIECFSFLNRALEND--M------------APIIIMATNRGITRIRGTN----YR-----SPHGIPIDL 346 (454)
T ss_pred ceEEEeeehhhhhHHHHHHHHHhhhc--c------------CcEEEEEcCCceEEeecCC----CC-----CCCCCcHHH
Confidence 79999999999999999999999887 2 2468999999876553210 00 012467899
Q ss_pred hhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc
Q 036633 383 LKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA 441 (550)
Q Consensus 383 l~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~ 441 (550)
+.|+ -+|... |++++++.+|+...+.+ . .+.++++|++.|..-+.
T Consensus 347 lDR~-lII~t~---py~~~d~~~IL~iRc~E-------E---dv~m~~~A~d~Lt~i~~ 391 (454)
T KOG2680|consen 347 LDRM-LIISTQ---PYTEEDIKKILRIRCQE-------E---DVEMNPDALDLLTKIGE 391 (454)
T ss_pred hhhh-heeecc---cCcHHHHHHHHHhhhhh-------h---ccccCHHHHHHHHHhhh
Confidence 9999 899999 99999999999988743 4 34889999999987543
No 228
>PRK08181 transposase; Validated
Probab=98.88 E-value=8.7e-09 Score=103.73 Aligned_cols=128 Identities=15% Similarity=0.230 Sum_probs=80.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHh-CCCCeEEeccccccC--H
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKK-RPYSVVLFDKIEKAN--S 315 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~-~p~~VlllDEIeka~--~ 315 (550)
.+++|+||||||||.||.+++..+.. ....++.++++++.+....+.--+.+...++. ....+|+|||++..+ +
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~ 183 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIE---NGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQ 183 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHH---cCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCH
Confidence 57999999999999999999988765 44466667765544322211111111112211 234699999998764 4
Q ss_pred HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc---ceeEe
Q 036633 316 SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD---KLVVI 392 (550)
Q Consensus 316 ~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid---~ii~f 392 (550)
..+..|+++++.. . .+.-+|+|||.+...+....++ ..+..++++|+- .+|.|
T Consensus 184 ~~~~~Lf~lin~R--~-----------~~~s~IiTSN~~~~~w~~~~~D-----------~~~a~aildRL~h~~~~i~~ 239 (269)
T PRK08181 184 AETSVLFELISAR--Y-----------ERRSILITANQPFGEWNRVFPD-----------PAMTLAAVDRLVHHATIFEM 239 (269)
T ss_pred HHHHHHHHHHHHH--H-----------hCCCEEEEcCCCHHHHHHhcCC-----------ccchhhHHHhhhcCceEEec
Confidence 5677899999754 3 1123789999988776543221 233456677773 34555
Q ss_pred c
Q 036633 393 D 393 (550)
Q Consensus 393 ~ 393 (550)
.
T Consensus 240 ~ 240 (269)
T PRK08181 240 N 240 (269)
T ss_pred C
Confidence 5
No 229
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.87 E-value=5.3e-08 Score=107.92 Aligned_cols=182 Identities=16% Similarity=0.101 Sum_probs=123.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh--HHHHHHHh------------CCCCe
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD--SLAALVKK------------RPYSV 304 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG--~lt~al~~------------~p~~V 304 (550)
+-+++.|+.|+||+++++.++..|.. ..||+.+-.+- +...|+| .+..+++. ...+|
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~----~~p~r~~p~~~-----t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~Gv 96 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPA----GTPLRRLPPGI-----ADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGV 96 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCC----CCCcccCCCCC-----cHHHccCCchHHhHhhcCCcCCCCCceeeccCCE
Confidence 78999999999999999999999854 23666655332 4567888 55555543 12489
Q ss_pred EEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCC-eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh
Q 036633 305 VLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTN-TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL 383 (550)
Q Consensus 305 lllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~-~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll 383 (550)
||+||+..+++.+++.|++.+++|+++ +...|..+.+.- .++|+|-| +.+. ...+++.++
T Consensus 97 L~lDe~n~~~~~~~~aLleame~G~vt-IeR~G~s~~~Pa~F~LIat~~-~~~~-----------------~~~L~~~lL 157 (584)
T PRK13406 97 LVLAMAERLEPGTAARLAAALDTGEVR-LERDGLALRLPARFGLVALDE-GAEE-----------------DERAPAALA 157 (584)
T ss_pred EEecCcccCCHHHHHHHHHHHhCCcEE-EEECCcEEecCCCcEEEecCC-Chhc-----------------ccCCCHHhH
Confidence 999999999999999999999999666 544566666644 44555422 2111 246789999
Q ss_pred hhccceeEecCCCCCCHHHHHHH--HHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCC-cccHHHHHHcc
Q 036633 384 KLLDKLVVIDLAVPLLDTTRLLL--REWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQ-NGEGLKRWMDQ 457 (550)
Q Consensus 384 ~Rid~ii~f~~~~pL~~e~i~~I--~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~Ga-N~R~L~~~i~~ 457 (550)
.||+-.|.+. +++..+.... ....+....+++ . .+.++++++++++..+. .+|. +.|.--.++.-
T Consensus 158 DRf~l~v~v~---~~~~~~~~~~~~~~~~I~~AR~rl--~---~v~v~~~~l~~i~~~~~-~~gv~S~Ra~i~llra 225 (584)
T PRK13406 158 DRLAFHLDLD---GLALRDAREIPIDADDIAAARARL--P---AVGPPPEAIAALCAAAA-ALGIASLRAPLLALRA 225 (584)
T ss_pred hheEEEEEcC---CCChHHhcccCCCHHHHHHHHHHH--c---cCCCCHHHHHHHHHHHH-HhCCCCcCHHHHHHHH
Confidence 9999888888 7666544321 111222222333 2 45789999999987554 2232 33877777654
No 230
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.86 E-value=3.1e-08 Score=87.63 Aligned_cols=82 Identities=28% Similarity=0.272 Sum_probs=58.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhh----------------hHHhHHHHHHHhCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK----------------HFFDSLAALVKKRPY 302 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s----------------~liG~lt~al~~~p~ 302 (550)
.+++|+||||||||++++.++..+.. ....++.++++......... ..+..+....+..+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP---PGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC---CCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999877 33358888888765432221 011133444444556
Q ss_pred CeEEeccccccCHHHHHHHHH
Q 036633 303 SVVLFDKIEKANSSILNLLLK 323 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~ 323 (550)
.||++||++.+..........
T Consensus 80 ~viiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 80 DVLILDEITSLLDAEQEALLL 100 (148)
T ss_pred CEEEEECCcccCCHHHHHHHH
Confidence 899999999998877665544
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.85 E-value=1.3e-08 Score=101.99 Aligned_cols=106 Identities=21% Similarity=0.243 Sum_probs=73.6
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh----HHHHHHHhCCCCeEEeccccc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD----SLAALVKKRPYSVVLFDKIEK 312 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG----~lt~al~~~p~~VlllDEIek 312 (550)
++.+++|+||||||||.||-+|+..+.. ...+++.+..+++......+.--| .|...+ +.+.||+|||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~---~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK---AGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccC
Confidence 4579999999999999999999999976 555677777766643322211112 222223 4456999999987
Q ss_pred --cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 313 --ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 313 --a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
.++...+.|+|++..- + . +... ++|||.....+..
T Consensus 179 ~~~~~~~~~~~~q~I~~r--~-~---------~~~~-~~tsN~~~~~~~~ 215 (254)
T COG1484 179 EPFSQEEADLLFQLISRR--Y-E---------SRSL-IITSNLSFGEWDE 215 (254)
T ss_pred ccCCHHHHHHHHHHHHHH--H-h---------hccc-eeecCCChHHHHh
Confidence 5566788888888766 3 1 1223 9999998777644
No 232
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.83 E-value=1.5e-08 Score=104.91 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=79.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh--HH---HHHHHhCCCCeEEecccc--
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD--SL---AALVKKRPYSVVLFDKIE-- 311 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG--~l---t~al~~~p~~VlllDEIe-- 311 (550)
.+++|+||||||||+||.+||+.+.. ....++.++++++........+-. .. .+.+.. ..+|+||+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~---~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~--~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLD---RGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN--CDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc--CCEEEEeccCCC
Confidence 68999999999999999999999977 555777777766533221111000 11 122232 3699999994
Q ss_pred ccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc
Q 036633 312 KANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK 388 (550)
Q Consensus 312 ka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ 388 (550)
..++..++.|+.+++.. . .. +.-+|+|||.+...+.. .|++.+++|+-.
T Consensus 259 ~~t~~~~~~Lf~iin~R--~--~~--------~k~tIiTSNl~~~el~~----------------~~~eri~SRL~~ 307 (329)
T PRK06835 259 KITEFSKSELFNLINKR--L--LR--------QKKMIISTNLSLEELLK----------------TYSERISSRLLG 307 (329)
T ss_pred CCCHHHHHHHHHHHHHH--H--HC--------CCCEEEECCCCHHHHHH----------------HHhHHHHHHHHc
Confidence 55678888999999765 2 11 12278999998766533 466778888843
No 233
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=7.9e-08 Score=98.22 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-------CCCCceeEEecCCCCchhhh
Q 036633 214 AIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-------DNDNHLIHFDMGNYTELESI 286 (550)
Q Consensus 214 ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-------~~~~~li~id~s~~~~~~~~ 286 (550)
+++.+.+++... +-+.++||+||.|+||+++|+.+++.+.... .....++.+|-.. ..-.+
T Consensus 4 ~~~~l~~~i~~~----------~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--~~i~v 71 (299)
T PRK07132 4 WIKFLDNSATQN----------KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--KDLSK 71 (299)
T ss_pred HHHHHHHHHHhC----------CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--CcCCH
Confidence 455555566543 1227999999999999999999999985410 0111344454111 11111
Q ss_pred hhHHhHHHHHHHh-----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633 287 KHFFDSLAALVKK-----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV 361 (550)
Q Consensus 287 s~liG~lt~al~~-----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~ 361 (550)
.... .+.+.+.. .++.|+++|++|+++...++.||+.+++. . .+|+||++|+..
T Consensus 72 d~Ir-~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEP--p-----------~~t~~il~~~~~------- 130 (299)
T PRK07132 72 SEFL-SAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEP--P-----------KDTYFLLTTKNI------- 130 (299)
T ss_pred HHHH-HHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCC--C-----------CCeEEEEEeCCh-------
Confidence 1111 23333322 35679999999999999999999999988 6 778888877632
Q ss_pred hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633 362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE 408 (550)
Q Consensus 362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~ 408 (550)
..+-|.+.+|| +++.|. |++.+++...+.
T Consensus 131 --------------~kll~TI~SRc-~~~~f~---~l~~~~l~~~l~ 159 (299)
T PRK07132 131 --------------NKVLPTIVSRC-QVFNVK---EPDQQKILAKLL 159 (299)
T ss_pred --------------HhChHHHHhCe-EEEECC---CCCHHHHHHHHH
Confidence 24556799999 899999 999998876654
No 234
>PF13173 AAA_14: AAA domain
Probab=98.81 E-value=3.3e-08 Score=88.45 Aligned_cols=122 Identities=16% Similarity=0.198 Sum_probs=80.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHh---CCCCeEEeccccccCH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKK---RPYSVVLFDKIEKANS 315 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~---~p~~VlllDEIeka~~ 315 (550)
.++++.||.|||||++++.+++.+.. ..+++.+|+........... .+.+.+.+ ....+||||||++++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~----~~~~~yi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~iDEiq~~~- 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLP----PENILYINFDDPRDRRLADP---DLLEYFLELIKPGKKYIFIDEIQYLP- 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcc----cccceeeccCCHHHHHHhhh---hhHHHHHHhhccCCcEEEEehhhhhc-
Confidence 37899999999999999999988762 23889999887754322110 01222222 134799999999996
Q ss_pred HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCC
Q 036633 316 SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLA 395 (550)
Q Consensus 316 ~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~ 395 (550)
+....+-.+.+++ . ++-||+|++..... .......+.+|. ..+...
T Consensus 75 ~~~~~lk~l~d~~--~------------~~~ii~tgS~~~~l-----------------~~~~~~~l~gr~-~~~~l~-- 120 (128)
T PF13173_consen 75 DWEDALKFLVDNG--P------------NIKIILTGSSSSLL-----------------SKDIAESLAGRV-IEIELY-- 120 (128)
T ss_pred cHHHHHHHHHHhc--c------------CceEEEEccchHHH-----------------hhcccccCCCeE-EEEEEC--
Confidence 6777777777766 2 33356655432111 123345678888 578888
Q ss_pred CCCCHHHH
Q 036633 396 VPLLDTTR 403 (550)
Q Consensus 396 ~pL~~e~i 403 (550)
||+-.|.
T Consensus 121 -Plsf~E~ 127 (128)
T PF13173_consen 121 -PLSFREF 127 (128)
T ss_pred -CCCHHHh
Confidence 9987764
No 235
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.8e-08 Score=105.97 Aligned_cols=197 Identities=19% Similarity=0.202 Sum_probs=129.3
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCC-CcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLS-SRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL 283 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~-~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~ 283 (550)
..+-|-...+..+...+...+....... ..-+| ..+|++||||||||.+++++|+.... .++.+|++++..+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a------~~~~i~~peli~k 257 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA------FLFLINGPELISK 257 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc------eeEecccHHHHHh
Confidence 4566777777777777655421111110 11234 78999999999999999999999766 8899998876422
Q ss_pred h---hhhhHHhHHHHHHHhCCCCeEEeccccccCH----------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEe
Q 036633 284 E---SIKHFFDSLAALVKKRPYSVVLFDKIEKANS----------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMT 350 (550)
Q Consensus 284 ~---~~s~liG~lt~al~~~p~~VlllDEIeka~~----------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~T 350 (550)
. +.+.|--.|.++....+.+++|+||++..-| .+...|+.+++.- . .-.++|++.|
T Consensus 258 ~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~--~---------~~~~vivl~a 326 (693)
T KOG0730|consen 258 FPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGL--K---------PDAKVIVLAA 326 (693)
T ss_pred cccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhC--c---------CcCcEEEEEe
Confidence 1 1222222566666666359999999997764 4566677666533 1 1167789999
Q ss_pred CCCChHHHHHhhhhhhHhhHHHHhccCCChhhh-hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 036633 351 SDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL-KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPS 429 (550)
Q Consensus 351 sN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll-~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~ 429 (550)
||.. ..++|++. +|+|.-+... -.+......|++..... .+. . +
T Consensus 327 tnrp---------------------~sld~alRRgRfd~ev~Ig---iP~~~~RldIl~~l~k~-------~~~---~-~ 371 (693)
T KOG0730|consen 327 TNRP---------------------DSLDPALRRGRFDREVEIG---IPGSDGRLDILRVLTKK-------MNL---L-S 371 (693)
T ss_pred cCCc---------------------cccChhhhcCCCcceeeec---CCCchhHHHHHHHHHHh-------cCC---c-c
Confidence 9975 46788888 5999999998 77888888888876643 222 2 4
Q ss_pred HHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 430 TSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 430 ~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+..+..++..+. |.-|.+|...+..
T Consensus 372 ~~~l~~iA~~th---GyvGaDL~~l~~e 396 (693)
T KOG0730|consen 372 DVDLEDIAVSTH---GYVGADLAALCRE 396 (693)
T ss_pred hhhHHHHHHHcc---chhHHHHHHHHHH
Confidence 556666665332 2122455555543
No 236
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.79 E-value=2.4e-08 Score=115.33 Aligned_cols=148 Identities=20% Similarity=0.226 Sum_probs=110.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh----------------HHHHHHHhCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD----------------SLAALVKKRPY 302 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG----------------~lt~al~~~p~ 302 (550)
.++||-|.||||||++..+||+..+. .++|||+|+-++ ...|+| -|..++|. +
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~------kliRINLSeQTd---L~DLfGsd~Pve~~Gef~w~dapfL~amr~--G 1612 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGK------KLIRINLSEQTD---LCDLFGSDLPVEEGGEFRWMDAPFLHAMRD--G 1612 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcC------ceEEeeccccch---HHHHhCCCCCcccCceeEecccHHHHHhhc--C
Confidence 36899999999999999999999877 999999998764 445677 45555554 4
Q ss_pred CeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec-CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChh
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL-TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPS 381 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~-~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ 381 (550)
+-|+|||+.-|+.+|+.-|-..||...--++..-...++. .|..|++|-|..... +. ++.++..
T Consensus 1613 ~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qg-----gG----------RKgLPkS 1677 (4600)
T COG5271 1613 GWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQG-----GG----------RKGLPKS 1677 (4600)
T ss_pred CEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcC-----CC----------cccCCHH
Confidence 5899999999999999999999986511112211444444 455567766652211 11 4678999
Q ss_pred hhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHH
Q 036633 382 LLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKR 416 (550)
Q Consensus 382 ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~ 416 (550)
|++|+ .+|... .|+.+|+..|+......++.
T Consensus 1678 F~nRF-svV~~d---~lt~dDi~~Ia~~~yp~v~~ 1708 (4600)
T COG5271 1678 FLNRF-SVVKMD---GLTTDDITHIANKMYPQVNE 1708 (4600)
T ss_pred Hhhhh-heEEec---ccccchHHHHHHhhCCccCh
Confidence 99999 688899 99999999998876654333
No 237
>PRK09183 transposase/IS protein; Provisional
Probab=98.77 E-value=1.8e-08 Score=101.17 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=67.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHh--CCCCeEEeccccc--cC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKK--RPYSVVLFDKIEK--AN 314 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~--~p~~VlllDEIek--a~ 314 (550)
.+++|+||||||||++|.+|+..+.. ....+..+++.++......+..-|.+...+.. ....+++|||++. .+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~---~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~ 179 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR---AGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFS 179 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCC
Confidence 58899999999999999999877644 33355556655443221111111112122211 2336999999986 55
Q ss_pred HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 315 SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 315 ~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
+...+.|+++++.. . .+.-+|+|||.+...+..
T Consensus 180 ~~~~~~lf~li~~r--~-----------~~~s~iiTsn~~~~~w~~ 212 (259)
T PRK09183 180 QEEANLFFQVIAKR--Y-----------EKGSMILTSNLPFGQWDQ 212 (259)
T ss_pred hHHHHHHHHHHHHH--H-----------hcCcEEEecCCCHHHHHH
Confidence 67777899999765 3 112278899998877755
No 238
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=2.7e-08 Score=98.61 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=85.8
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCce------eEEecCCCCchhhh---hhHHh-----HHHHHHHh---
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHL------IHFDMGNYTELESI---KHFFD-----SLAALVKK--- 299 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~l------i~id~s~~~~~~~~---s~liG-----~lt~al~~--- 299 (550)
.|..+||+||+|+||..+|.++|+.+...+ ...+. ..++-..+++-+.+ ..-+| .+.+.+..
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~-~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTK-ANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCC-CCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 458999999999999999999999997621 00100 00111112211110 01122 33433332
Q ss_pred --CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccC
Q 036633 300 --RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSL 377 (550)
Q Consensus 300 --~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~ 377 (550)
.++.|+++|++|++++...|.||+.+|+. . .+++||++|+.. ..
T Consensus 85 e~~~~KV~II~~ae~m~~~AaNaLLK~LEEP--p-----------~~t~fiLit~~~---------------------~~ 130 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQSANSLLKLIEEP--P-----------KNTYGIFTTRNE---------------------NN 130 (261)
T ss_pred hcCCCEEEEeccHhhhCHHHHHHHHHhhcCC--C-----------CCeEEEEEECCh---------------------Hh
Confidence 34679999999999999999999999998 6 788899988753 35
Q ss_pred CChhhhhhccceeEecCCCCCCHH
Q 036633 378 FKPSLLKLLDKLVVIDLAVPLLDT 401 (550)
Q Consensus 378 f~p~ll~Rid~ii~f~~~~pL~~e 401 (550)
..|-++||| +.+.|. ++...
T Consensus 131 lLpTI~SRC-q~~~~~---~~~~~ 150 (261)
T PRK05818 131 ILNTILSRC-VQYVVL---SKEKK 150 (261)
T ss_pred CchHhhhhe-eeeecC---Chhhh
Confidence 567799999 788888 76443
No 239
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.76 E-value=1.1e-08 Score=102.36 Aligned_cols=174 Identities=14% Similarity=0.172 Sum_probs=114.5
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++||++.+..+.+..... .- .++||+||||+|||....+.|+.+++.....+-+..+|.|.-..-..
T Consensus 41 ~dv~~~~ei~st~~~~~~~~----------~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~ 109 (360)
T KOG0990|consen 41 GIVIKQEPIWSTENRYSGMP----------GL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDP 109 (360)
T ss_pred hhHhcCCchhhHHHHhccCC----------CC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcc
Confidence 46889999887766653322 12 49999999999999999999999988100011122233332221111
Q ss_pred hhhHHh--HHHHH--HH--hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633 286 IKHFFD--SLAAL--VK--KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY 359 (550)
Q Consensus 286 ~s~liG--~lt~a--l~--~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~ 359 (550)
+..-+- .+|.. +- ...+..|+|||.|.+..+.|+.|.++++.- . .|+.|+.-+|..
T Consensus 110 vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~--t-----------~n~rF~ii~n~~----- 171 (360)
T KOG0990|consen 110 VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKY--T-----------ANTRFATISNPP----- 171 (360)
T ss_pred hHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHh--c-----------cceEEEEeccCh-----
Confidence 111110 11210 11 125679999999999999999999988765 4 455577767753
Q ss_pred HhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHh
Q 036633 360 EVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIAS 438 (550)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~ 438 (550)
....|++.+|| .-+.|. |++...+.....+.++. . .+..+++....++.
T Consensus 172 ----------------~ki~pa~qsRc-trfrf~---pl~~~~~~~r~shi~e~-------e---~~~~~~~~~~a~~r 220 (360)
T KOG0990|consen 172 ----------------QKIHPAQQSRC-TRFRFA---PLTMAQQTERQSHIRES-------E---QKETNPEGYSALGR 220 (360)
T ss_pred ----------------hhcCchhhccc-ccCCCC---CCChhhhhhHHHHHHhc-------c---hhhcCHHHHHHHHH
Confidence 35678899999 688999 99999998888887743 1 34566666666554
No 240
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.72 E-value=2.5e-07 Score=90.26 Aligned_cols=178 Identities=21% Similarity=0.260 Sum_probs=94.9
Q ss_pred ccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhh
Q 036633 208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287 (550)
Q Consensus 208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s 287 (550)
++|.+.-++.+.+.+... ...+++++||.|+|||++++.+.+.+.. .....+.+++..-.......
T Consensus 1 F~gR~~el~~l~~~l~~~-----------~~~~~~l~G~rg~GKTsLl~~~~~~~~~---~~~~~~y~~~~~~~~~~~~~ 66 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-----------PSQHILLYGPRGSGKTSLLKEFINELKE---KGYKVVYIDFLEESNESSLR 66 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-------------SSEEEEEESTTSSHHHHHHHHHHHCT-----EECCCHHCCTTBSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-----------cCcEEEEEcCCcCCHHHHHHHHHHHhhh---cCCcEEEEecccchhhhHHH
Confidence 467777777777666532 1268899999999999999999998833 11122222221111110000
Q ss_pred hH-------------H------------------------hHHHHHHHhCC-CCeEEeccccccC------HHHHHHHHH
Q 036633 288 HF-------------F------------------------DSLAALVKKRP-YSVVLFDKIEKAN------SSILNLLLK 323 (550)
Q Consensus 288 ~l-------------i------------------------G~lt~al~~~p-~~VlllDEIeka~------~~v~~~Ll~ 323 (550)
.+ + -.+.+.+.... ..||+|||++.+. ++....|..
T Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~ 146 (234)
T PF01637_consen 67 SFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRS 146 (234)
T ss_dssp HHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHH
Confidence 00 0 03333444332 3799999999988 677888888
Q ss_pred hhhhccccccccCCeEeecCC-eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHH
Q 036633 324 ILKTDFNRKATRGIAAFDLTN-TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTT 402 (550)
Q Consensus 324 ~ld~g~~~~l~d~g~~vd~~~-~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~ 402 (550)
.++.. . . -.+ ++|+++|+.+ +.. .+... .+.+.+|+.. +.+. ||+.++
T Consensus 147 ~~~~~--~--~-------~~~~~~v~~~S~~~---~~~------------~~~~~-~~~~~~~~~~-~~l~---~l~~~e 195 (234)
T PF01637_consen 147 LLDSL--L--S-------QQNVSIVITGSSDS---LME------------EFLDD-KSPLFGRFSH-IELK---PLSKEE 195 (234)
T ss_dssp HHHH---------------TTEEEEEEESSHH---HHH------------HTT-T-TSTTTT---E-EEE-------HHH
T ss_pred HHhhc--c--c-------cCCceEEEECCchH---HHH------------Hhhcc-cCccccccce-EEEe---eCCHHH
Confidence 88773 1 0 023 3445544421 111 11122 3458899965 9999 999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633 403 RLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN 439 (550)
Q Consensus 403 i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~ 439 (550)
..+++...+.+ . . .+.++++.++.+...
T Consensus 196 ~~~~~~~~~~~-------~-~-~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 196 AREFLKELFKE-------L-I-KLPFSDEDIEEIYSL 223 (234)
T ss_dssp HHHHHHHHHHC-------C--------HHHHHHHHHH
T ss_pred HHHHHHHHHHH-------h-h-cccCCHHHHHHHHHH
Confidence 99998886643 2 3 335588888888763
No 241
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5e-07 Score=98.56 Aligned_cols=186 Identities=17% Similarity=0.238 Sum_probs=118.9
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh--hhhHHh-HHHHHHHhCCCCeEEecccccc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES--IKHFFD-SLAALVKKRPYSVVLFDKIEKA 313 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~--~s~liG-~lt~al~~~p~~VlllDEIeka 313 (550)
+++++++.||+|+|||.|++++.++++. .....+..++|+....... +.+++- .+++++...| +||+||++|-+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k--~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~P-SiIvLDdld~l 506 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSK--DLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAP-SIIVLDDLDCL 506 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhcc--ccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCC-cEEEEcchhhh
Confidence 4489999999999999999999999875 2344567789999875542 223333 7889999989 89999999864
Q ss_pred CH-------------HHHHHHH-HhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCC
Q 036633 314 NS-------------SILNLLL-KILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFK 379 (550)
Q Consensus 314 ~~-------------~v~~~Ll-~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~ 379 (550)
-. ..+..++ |++..- .+++ +...+|+|++. . ..|+
T Consensus 507 ~~~s~~e~~q~~~~~~rla~flnqvi~~y----~~~~------~~ia~Iat~qe-~--------------------qtl~ 555 (952)
T KOG0735|consen 507 ASASSNENGQDGVVSERLAAFLNQVIKIY----LKRN------RKIAVIATGQE-L--------------------QTLN 555 (952)
T ss_pred hccCcccCCcchHHHHHHHHHHHHHHHHH----HccC------cEEEEEEechh-h--------------------hhcC
Confidence 21 1233333 555432 2221 22346776653 1 2333
Q ss_pred hhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 380 PSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 380 p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
|-|. .+++.++.+. ++...+...|+...+.+.. .....+.++.++..+ ..|.+ ++|.-.+++
T Consensus 556 ~~L~s~~~Fq~~~~L~---ap~~~~R~~IL~~~~s~~~----------~~~~~~dLd~ls~~T-EGy~~--~DL~ifVeR 619 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALP---APAVTRRKEILTTIFSKNL----------SDITMDDLDFLSVKT-EGYLA--TDLVIFVER 619 (952)
T ss_pred hhhcCccceEEEEecC---CcchhHHHHHHHHHHHhhh----------hhhhhHHHHHHHHhc-CCccc--hhHHHHHHH
Confidence 3332 2677778888 8999999999998886422 123444555666533 33456 888888886
Q ss_pred hhhHHHHHhhhhcCCCc
Q 036633 458 RPSADHVIDKFLRDAGY 474 (550)
Q Consensus 458 ~~la~~~l~~~~~~~~~ 474 (550)
.+..+++. .+.++..
T Consensus 620 -ai~~a~le-ris~~~k 634 (952)
T KOG0735|consen 620 -AIHEAFLE-RISNGPK 634 (952)
T ss_pred -HHHHHHHH-HhccCcc
Confidence 55555533 3334434
No 242
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.67 E-value=4.7e-07 Score=89.27 Aligned_cols=103 Identities=18% Similarity=0.278 Sum_probs=68.9
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHH
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILN 319 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~ 319 (550)
.-.+.||+|||||++.+.+|+.++. +++.+||++-.+...+++++ .+.... ++.++|||+++++.+++.
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~------~~~vfnc~~~~~~~~l~ril---~G~~~~--GaW~cfdefnrl~~~vLS 102 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGR------FVVVFNCSEQMDYQSLSRIL---KGLAQS--GAWLCFDEFNRLSEEVLS 102 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--------EEEEETTSSS-HHHHHHHH---HHHHHH--T-EEEEETCCCSSHHHHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCC------eEEEecccccccHHHHHHHH---HHHhhc--CchhhhhhhhhhhHHHHH
Confidence 4457999999999999999999988 99999999998887777664 222221 468999999999999888
Q ss_pred HHHHhhh-------hccccccccCCeEeecC-CeEEEEeCCCC
Q 036633 320 LLLKILK-------TDFNRKATRGIAAFDLT-NTLIIMTSDLK 354 (550)
Q Consensus 320 ~Ll~~ld-------~g~~~~l~d~g~~vd~~-~~iiI~TsN~g 354 (550)
.+.+.+. .+... +.-.|..+... ++-|++|.|.+
T Consensus 103 ~i~~~i~~i~~al~~~~~~-~~~~g~~i~l~~~~~iFiT~np~ 144 (231)
T PF12774_consen 103 VISQQIQSIQDALRAKQKS-FTLEGQEIKLNPNCGIFITMNPG 144 (231)
T ss_dssp HHHHHHHHHHHHHHCTSSE-EEETTCEEE--TT-EEEEEE-B-
T ss_pred HHHHHHHHHHHhhcccccc-cccCCCEEEEccceeEEEeeccc
Confidence 7766553 33223 33335555544 34466677765
No 243
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.62 E-value=2.6e-06 Score=88.18 Aligned_cols=124 Identities=19% Similarity=0.248 Sum_probs=77.2
Q ss_pred eEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCC-----
Q 036633 304 VVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLF----- 378 (550)
Q Consensus 304 VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f----- 378 (550)
||++|++|+++|+-...++..+..= .++.|+++|++.+. +.+...+...+
T Consensus 175 ViiIDdLDR~~~~~i~~~l~~ik~~-----------~~~~~i~~Il~~D~--------------~~l~~ai~~~~~~~~~ 229 (325)
T PF07693_consen 175 VIIIDDLDRCSPEEIVELLEAIKLL-----------LDFPNIIFILAFDP--------------EILEKAIEKNYGEGFD 229 (325)
T ss_pred EEEEcchhcCCcHHHHHHHHHHHHh-----------cCCCCeEEEEEecH--------------HHHHHHHHhhcCcccc
Confidence 8889999999999888788777432 36689999998763 22333333333
Q ss_pred ---ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccC----------CHHHHHHHHhcCc-ccC
Q 036633 379 ---KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCP----------STSALVHIASNAA-RKY 444 (550)
Q Consensus 379 ---~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~----------~~~a~~~L~~~~~-~~~ 444 (550)
..+++.++ --++|.+| +++..++...+...+............ .-.+ .......+.. ++ +..
T Consensus 230 ~~~~~~yLeKi-iq~~~~lP-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 305 (325)
T PF07693_consen 230 EIDGREYLEKI-IQVPFSLP-PPSPSDLERYLNELLESLESETNESDD-IETLSNSASNENLRIDEILNDIID-SIDFSI 305 (325)
T ss_pred cccHHHHHHhh-cCeEEEeC-CCCHHHHHHHHHHHHHHhhhccccccc-hhhhhhcchhhhhhHHHHHHHHHH-hhhhcC
Confidence 35788888 66777733 777888888887776655544322211 0001 0122233332 22 233
Q ss_pred CCcccHHHHHHcc
Q 036633 445 GQNGEGLKRWMDQ 457 (550)
Q Consensus 445 GaN~R~L~~~i~~ 457 (550)
+ |.|.++|+++.
T Consensus 306 ~-npR~ikr~iN~ 317 (325)
T PF07693_consen 306 G-NPRDIKRFINS 317 (325)
T ss_pred C-CHHHHHHHHHH
Confidence 5 89999999985
No 244
>PRK06921 hypothetical protein; Provisional
Probab=98.60 E-value=1.6e-07 Score=94.67 Aligned_cols=104 Identities=23% Similarity=0.280 Sum_probs=65.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEEecCCCCchhhhhhHHhHHHHHHHh-CCCCeEEeccccc----
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHFDMGNYTELESIKHFFDSLAALVKK-RPYSVVLFDKIEK---- 312 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~id~s~~~~~~~~s~liG~lt~al~~-~p~~VlllDEIek---- 312 (550)
.+++|+||||||||+||.+|+..+.. . ....+.+...++.... ...++.+.+.+.. ....+|+||+++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~---~~g~~v~y~~~~~l~~~l--~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMR---KKGVPVLYFPFVEGFGDL--KDDFDLLEAKLNRMKKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhh---hcCceEEEEEHHHHHHHH--HHHHHHHHHHHHHhcCCCEEEEeccccccCC
Confidence 68999999999999999999999865 3 3455666654332111 0111222222221 2346999999943
Q ss_pred ---cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633 313 ---ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY 359 (550)
Q Consensus 313 ---a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~ 359 (550)
.+.-.+..|+.+++.. . .. +.-+|+|||.....+.
T Consensus 193 ~e~~t~~~~~~lf~iin~R--~--~~--------~k~tIitsn~~~~el~ 230 (266)
T PRK06921 193 KPRATEWQIEQMYSVLNYR--Y--LN--------HKPILISSELTIDELL 230 (266)
T ss_pred CccCCHHHHHHHHHHHHHH--H--HC--------CCCEEEECCCCHHHHh
Confidence 4555677888888655 2 11 1226889999876654
No 245
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.60 E-value=2.6e-07 Score=95.02 Aligned_cols=127 Identities=19% Similarity=0.152 Sum_probs=76.5
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF 289 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l 289 (550)
++..+...+...+... .. ...+..++|+||+|||||+||.+||..+.. ...+...+.++++......+.-
T Consensus 135 ~~~~~~~~~~~fi~~~---~~----~~~~~gl~L~G~~G~GKThLa~Aia~~l~~---~g~~v~~~~~~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAY---PP----GEKVKGLYLYGDFGVGKSYLLAAIANELAK---KGVSSTLLHFPEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHh---hc----cCCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEEHHHHHHHHHHHHh
Confidence 4555665555555543 11 112368999999999999999999999976 4456677777665432221111
Q ss_pred Hh---HHHHHHHhCCCCeEEeccccc--cCHHHHHHHHH-hhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 290 FD---SLAALVKKRPYSVVLFDKIEK--ANSSILNLLLK-ILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 290 iG---~lt~al~~~p~~VlllDEIek--a~~~v~~~Ll~-~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
-| .+.+.+.+ ..||+|||+.. .++-+.+.++. +++.. +. .+.-+|+|||...+.+..
T Consensus 205 ~~~~~~~l~~l~~--~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R----~~--------~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 205 DGSVKEKIDAVKE--APVLMLDDIGAEQMSSWVRDEVLGVILQYR----MQ--------EELPTFFTSNFDFDELEH 267 (306)
T ss_pred cCcHHHHHHHhcC--CCEEEEecCCCccccHHHHHHHHHHHHHHH----HH--------CCCeEEEECCCCHHHHHH
Confidence 11 22233333 35999999964 45555544444 44533 11 122378999998877655
No 246
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.53 E-value=6.1e-06 Score=79.99 Aligned_cols=204 Identities=19% Similarity=0.215 Sum_probs=130.8
Q ss_pred cccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
.++|-+...+.+++...+. ..| .| .++||+|.-|||||++.|++...+.. ..-.++.++-.++. .
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F---~~G-----~pANnVLLwGaRGtGKSSLVKA~~~e~~~---~glrLVEV~k~dl~---~ 126 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQF---AEG-----LPANNVLLWGARGTGKSSLVKALLNEYAD---EGLRLVEVDKEDLA---T 126 (287)
T ss_pred HHhCchHHHHHHHHHHHHH---HcC-----CcccceEEecCCCCChHHHHHHHHHHHHh---cCCeEEEEcHHHHh---h
Confidence 4678888888888777766 333 46 79999999999999999999999877 44457777744431 1
Q ss_pred hhhHHhHHHHHHHhCCCC-eEEecccccc-CHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh-
Q 036633 286 IKHFFDSLAALVKKRPYS-VVLFDKIEKA-NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM- 362 (550)
Q Consensus 286 ~s~liG~lt~al~~~p~~-VlllDEIeka-~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~- 362 (550)
+..+.+.++..|.. |||+|+.--- +.+....|-.+||.| +.- -..|++|.+|||.-- .+.+..
T Consensus 127 ----Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~----ve~-----rP~NVl~YATSNRRH-Ll~e~~~ 192 (287)
T COG2607 127 ----LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGG----VEG-----RPANVLFYATSNRRH-LLPEDMK 192 (287)
T ss_pred ----HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCC----ccc-----CCCeEEEEEecCCcc-cccHhhh
Confidence 23566777777755 7788886432 345566666677666 221 237899999999632 111111
Q ss_pred hhhh-------HhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHH
Q 036633 363 LTAT-------YGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVH 435 (550)
Q Consensus 363 ~~~~-------~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~ 435 (550)
.+.. .+.+.+.+ .|-.|+.--+.|. |.+.++...|++..... .|+ .++++.++.
T Consensus 193 dn~~~~~eih~~eaveEKl------SlSDRFGLwL~F~---~~~Q~~YL~~V~~~a~~-------~~l---~~~~e~l~~ 253 (287)
T COG2607 193 DNEGSTGEIHPSEAVEEKL------SLSDRFGLWLSFY---PCDQDEYLKIVDHYAKH-------FGL---DISDEELHA 253 (287)
T ss_pred hCCCcccccChhHHHHHhh------chhhhcceeeccc---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHH
Confidence 1110 11222222 3678998899999 99999999999998843 444 666654443
Q ss_pred HHhc-CcccCCCcccHHHHHHcc
Q 036633 436 IASN-AARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 436 L~~~-~~~~~GaN~R~L~~~i~~ 457 (550)
=+-. +..+.|-+||--.++++.
T Consensus 254 eAl~WAt~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 254 EALQWATTRGGRSGRVAWQFIRD 276 (287)
T ss_pred HHHHHHHhcCCCccHhHHHHHHH
Confidence 3321 112223355766666663
No 247
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.53 E-value=2.3e-07 Score=82.60 Aligned_cols=90 Identities=19% Similarity=0.345 Sum_probs=62.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCC--CCCCceeEEecCCCCchhhh------------------hhHHhHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNN--DNDNHLIHFDMGNYTELESI------------------KHFFDSLAALVK 298 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~--~~~~~li~id~s~~~~~~~~------------------s~liG~lt~al~ 298 (550)
..++++||||+|||++++.+++.+.... ....+++.++++.......+ ..+...+...+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 6899999999999999999999873200 00347888888766632221 112225566666
Q ss_pred hCCCCeEEecccccc-CHHHHHHHHHhhhhc
Q 036633 299 KRPYSVVLFDKIEKA-NSSILNLLLKILKTD 328 (550)
Q Consensus 299 ~~p~~VlllDEIeka-~~~v~~~Ll~~ld~g 328 (550)
+....+|+|||++.+ +...++.|..+++..
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~ 115 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLNES 115 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTCSC
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHhCC
Confidence 666569999999999 999999998888744
No 248
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4e-07 Score=96.39 Aligned_cols=164 Identities=18% Similarity=0.291 Sum_probs=99.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh--------HHHHH---HHh-CCC---C
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD--------SLAAL---VKK-RPY---S 303 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG--------~lt~a---l~~-~p~---~ 303 (550)
.-+||+||||||||.+||.|.+.|.. .+..+ +|..+. .++.+| .|.+| -|+ .+. -
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNA---rePKI--VNGPeI-----L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLH 326 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNA---REPKI--VNGPEI-----LNKYVGESEENVRKLFADAEEEQRRLGANSGLH 326 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcC---CCCcc--cCcHHH-----HHHhhcccHHHHHHHHHhHHHHHHhhCccCCce
Confidence 57899999999999999999999977 33222 344333 344444 22222 222 222 3
Q ss_pred eEEeccccc-------------cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhH
Q 036633 304 VVLFDKIEK-------------ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRV 370 (550)
Q Consensus 304 VlllDEIek-------------a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~ 370 (550)
||+|||||. .|..|.|.||.=+|.- . -+.|.++|--||.-
T Consensus 327 IIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV--e---------qLNNILVIGMTNR~---------------- 379 (744)
T KOG0741|consen 327 IIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV--E---------QLNNILVIGMTNRK---------------- 379 (744)
T ss_pred EEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH--H---------hhhcEEEEeccCch----------------
Confidence 999999984 3668999999888643 3 23788888888862
Q ss_pred HHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcc
Q 036633 371 NEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNG 448 (550)
Q Consensus 371 ~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~ 448 (550)
..++++|+ +|+...+... -.++.-..+|++.+-.+ +++++.+.-.++-+-+..+.+ .| .|
T Consensus 380 -----DlIDEALLRPGRlEVqmEIs---LPDE~gRlQIl~IHT~r----Mre~~~l~~dVdl~elA~lTK-Nf--SG--- 441 (744)
T KOG0741|consen 380 -----DLIDEALLRPGRLEVQMEIS---LPDEKGRLQILKIHTKR----MRENNKLSADVDLKELAALTK-NF--SG--- 441 (744)
T ss_pred -----hhHHHHhcCCCceEEEEEEe---CCCccCceEEEEhhhhh----hhhcCCCCCCcCHHHHHHHhc-CC--ch---
Confidence 23344454 7887677777 44555566666555443 333443222333333333332 22 24
Q ss_pred cHHHHHHcc
Q 036633 449 EGLKRWMDQ 457 (550)
Q Consensus 449 R~L~~~i~~ 457 (550)
-+|.-++..
T Consensus 442 AEleglVks 450 (744)
T KOG0741|consen 442 AELEGLVKS 450 (744)
T ss_pred hHHHHHHHH
Confidence 567777765
No 249
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=9.6e-07 Score=93.57 Aligned_cols=82 Identities=29% Similarity=0.360 Sum_probs=62.6
Q ss_pred CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE----ecCCCCchhhhhhHHhHHHHHHHhCCCCeEEecccc
Q 036633 237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF----DMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIE 311 (550)
Q Consensus 237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i----d~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIe 311 (550)
.| .++||.||||+|||.||-.+|....- ||+++ ||..+++...+..+.+.|.+| .++|-+||++|+||
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~F------PFvKiiSpe~miG~sEsaKc~~i~k~F~DA-YkS~lsiivvDdiE 608 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDF------PFVKIISPEDMIGLSESAKCAHIKKIFEDA-YKSPLSIIVVDDIE 608 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCC------CeEEEeChHHccCccHHHHHHHHHHHHHHh-hcCcceEEEEcchh
Confidence 45 89999999999999999999987555 99997 677777776666666666555 44688999999999
Q ss_pred cc------CHHHHHHHHHhh
Q 036633 312 KA------NSSILNLLLKIL 325 (550)
Q Consensus 312 ka------~~~v~~~Ll~~l 325 (550)
.+ .|..-|.+||.|
T Consensus 609 rLiD~vpIGPRfSN~vlQaL 628 (744)
T KOG0741|consen 609 RLLDYVPIGPRFSNLVLQAL 628 (744)
T ss_pred hhhcccccCchhhHHHHHHH
Confidence 75 355555555544
No 250
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.50 E-value=1.1e-07 Score=96.15 Aligned_cols=188 Identities=13% Similarity=0.170 Sum_probs=110.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-HHHHHHHh-------CCCCeEEeccc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-SLAALVKK-------RPYSVVLFDKI 310 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-~lt~al~~-------~p~~VlllDEI 310 (550)
.++||+||+|||||.+++..-+.+.. ...-...+++|..+....+..++. .+.. -+. ....|+|+|++
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~---~~~~~~~~~~s~~Tts~~~q~~ie~~l~k-~~~~~~gP~~~k~lv~fiDDl 109 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDS---DKYLVITINFSAQTTSNQLQKIIESKLEK-RRGRVYGPPGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTT---CCEEEEEEES-TTHHHHHHHHCCCTTECE-CTTEEEEEESSSEEEEEEETT
T ss_pred CcEEEECCCCCchhHHHHhhhccCCc---cccceeEeeccCCCCHHHHHHHHhhcEEc-CCCCCCCCCCCcEEEEEeccc
Confidence 48899999999999999886655533 221245688887764444332221 1100 000 11248999999
Q ss_pred cccCH------HHHHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhh
Q 036633 311 EKANS------SILNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSL 382 (550)
Q Consensus 311 eka~~------~v~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~l 382 (550)
.-..+ .....|.|+++.| - +-|. ..-..+.++.+|++.|.+.. +..++|-|
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~--g-~yd~~~~~~~~i~~i~~vaa~~p~~G------------------r~~is~R~ 168 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYG--G-FYDRKKLEWKSIEDIQFVAAMNPTGG------------------RNPISPRF 168 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCS--E-EECTTTTEEEEECSEEEEEEESSTTT--------------------SHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhc--C-cccCCCcEEEEEeeeEEEEecCCCCC------------------CCCCChHH
Confidence 75443 3678999999987 4 4443 34567788999999886431 12356778
Q ss_pred hhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc-cCCH-------HHHHHHHhc----Cc-ccCCCccc
Q 036633 383 LKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV-CPST-------SALVHIASN----AA-RKYGQNGE 449 (550)
Q Consensus 383 l~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l-~~~~-------~a~~~L~~~----~~-~~~GaN~R 449 (550)
++.+ .++.+. +++.+.+..|....+...-+.. .... .+ .+.+ ++...+... .. +.|=.|.|
T Consensus 169 ~r~f-~i~~~~---~p~~~sl~~If~~il~~~l~~~-~f~~-~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlR 242 (272)
T PF12775_consen 169 LRHF-NILNIP---YPSDESLNTIFSSILQSHLKNG-GFPE-DVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLR 242 (272)
T ss_dssp HTTE-EEEE-------TCCHHHHHHHHHHHHHTCHT-TSSG-GGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHH
T ss_pred hhhe-EEEEec---CCChHHHHHHHHHHHhhhcccC-CCCh-HHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHH
Confidence 8888 688888 8999999999998886543221 0000 01 1112 222222221 11 44566889
Q ss_pred HHHHHHcc
Q 036633 450 GLKRWMDQ 457 (550)
Q Consensus 450 ~L~~~i~~ 457 (550)
+|.++++.
T Consensus 243 Dlsrv~qG 250 (272)
T PF12775_consen 243 DLSRVFQG 250 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999986
No 251
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.48 E-value=1.4e-06 Score=97.01 Aligned_cols=247 Identities=13% Similarity=0.087 Sum_probs=138.4
Q ss_pred HHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCc--CCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633 197 YMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSR--RQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI 273 (550)
Q Consensus 197 l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~--~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li 273 (550)
...+-..+--.|+|.+.++++|+=++--.- .-.+.+. -|. -++||+|.||||||.+-+.+++.+.+ .+.
T Consensus 277 ~~~l~~SiaPsIyG~e~VKkAilLqLfgGv--~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr------~vy 348 (682)
T COG1241 277 YDILIKSIAPSIYGHEDVKKAILLQLFGGV--KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR------GVY 348 (682)
T ss_pred HHHHHHHhcccccCcHHHHHHHHHHhcCCC--cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc------eEE
Confidence 345556677889999998888776664430 0001111 133 68999999999999999999998765 111
Q ss_pred EEecCCCCchh---hh--hhHHhH---HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC--CeEeec-
Q 036633 274 HFDMGNYTELE---SI--KHFFDS---LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG--IAAFDL- 342 (550)
Q Consensus 274 ~id~s~~~~~~---~~--s~liG~---lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~--g~~vd~- 342 (550)
. +...-+... ++ ....|. =.+|+--.-.||+++||++|++..-...|..+|+.+ + ++-. |-...+
T Consensus 349 t-sgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQ--t-IsIaKAGI~atLn 424 (682)
T COG1241 349 T-SGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQ--T-ISIAKAGITATLN 424 (682)
T ss_pred E-ccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhc--E-eeecccceeeecc
Confidence 1 100000000 00 000110 011222234589999999999999999999999999 5 5554 522222
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH--------
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET-------- 414 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~-------- 414 (550)
.+|-|++++|........ +.-+.+ .=.|++.|++|||-++... -..+++.=..++.+.+...
T Consensus 425 ARcsvLAAaNP~~Gryd~------~~~~~e--nI~l~~~lLSRFDLifvl~--D~~d~~~D~~ia~hil~~h~~~~~~~~ 494 (682)
T COG1241 425 ARCSVLAAANPKFGRYDP------KKTVAE--NINLPAPLLSRFDLIFVLK--DDPDEEKDEEIAEHILDKHRGEEPEET 494 (682)
T ss_pred hhhhhhhhhCCCCCcCCC------CCCHHH--hcCCChhHHhhCCeeEEec--CCCCccchHHHHHHHHHHHhccccccc
Confidence 445566666654211100 000111 1257889999999766554 1334444455555555433
Q ss_pred ----------------HHHh---ccCCCccccCCHHHHHHHHhcCc-cc-CC----------CcccHHHHHHcc-hhhHH
Q 036633 415 ----------------KRRN---NDSKAVIVCPSTSALVHIASNAA-RK-YG----------QNGEGLKRWMDQ-RPSAD 462 (550)
Q Consensus 415 ----------------~~~l---~~~~~~~l~~~~~a~~~L~~~~~-~~-~G----------aN~R~L~~~i~~-~~la~ 462 (550)
.+++ +++.+ .-.+++++.+.|.++-. .+ .+ .-.|-|..+|+- .+.|.
T Consensus 495 ~~~~~~~~~~~~~~~~lrkYI~YAR~~v-~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak 573 (682)
T COG1241 495 ISLDGVDEVEERDFELLRKYISYARKNV-TPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAK 573 (682)
T ss_pred cccccccccccCcHHHHHHHHHHHhccC-CcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHh
Confidence 1121 23334 56889999999987422 11 11 012667777765 44444
Q ss_pred HHHh
Q 036633 463 HVID 466 (550)
Q Consensus 463 ~~l~ 466 (550)
.-|+
T Consensus 574 ~rLS 577 (682)
T COG1241 574 MRLS 577 (682)
T ss_pred hhcc
Confidence 4444
No 252
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.47 E-value=1.6e-06 Score=100.96 Aligned_cols=141 Identities=14% Similarity=0.207 Sum_probs=107.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh---------------HHHHHHHhCCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD---------------SLAALVKKRPYS 303 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG---------------~lt~al~~~p~~ 303 (550)
-++|+-||+.+|||++..-+|+..+. .|+|||=-+-++ ....+| .|.+|+|+.-
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tgh------kfVRINNHEHTd---lqeYiGTyvTdd~G~lsFkEGvLVeAlR~Gy-- 957 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGH------KFVRINNHEHTD---LQEYIGTYVTDDDGSLSFKEGVLVEALRRGY-- 957 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCc------cEEEecCcccch---HHHHhhceeecCCCceeeehhHHHHHHhcCc--
Confidence 58999999999999999999999988 999999665543 233455 8899998754
Q ss_pred eEEeccccccCHHHHHHHHHhhhhcccccc--ccC-CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCCh
Q 036633 304 VVLFDKIEKANSSILNLLLKILKTDFNRKA--TRG-IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKP 380 (550)
Q Consensus 304 VlllDEIeka~~~v~~~Ll~~ld~g~~~~l--~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p 380 (550)
-|+|||..-|+.+|+.+|-++||+. +.+ ... ...+.-.+-.+++|-|.+.--- . ++.++.
T Consensus 958 WIVLDELNLApTDVLEaLNRLLDDN--RelfIPETqevV~PHp~F~lFATQNppg~Yg-----G----------RK~LSr 1020 (4600)
T COG5271 958 WIVLDELNLAPTDVLEALNRLLDDN--RELFIPETQEVVVPHPNFRLFATQNPPGGYG-----G----------RKGLSR 1020 (4600)
T ss_pred EEEeeccccCcHHHHHHHHHhhccc--cceecCCcceeeccCCCeeEEeecCCCcccc-----c----------hHHHHH
Confidence 6999999999999999999999887 423 222 2333345556778878542111 1 356778
Q ss_pred hhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633 381 SLLKLLDKLVVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 381 ~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l 411 (550)
+|+||+ --+.|. ...++++..|++..+
T Consensus 1021 AFRNRF-lE~hFd---dipedEle~ILh~rc 1047 (4600)
T COG5271 1021 AFRNRF-LEMHFD---DIPEDELEEILHGRC 1047 (4600)
T ss_pred HHHhhh-Hhhhcc---cCcHHHHHHHHhccC
Confidence 899999 678999 999999999987544
No 253
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.4e-06 Score=91.52 Aligned_cols=164 Identities=16% Similarity=0.255 Sum_probs=109.6
Q ss_pred ccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch---
Q 036633 208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL--- 283 (550)
Q Consensus 208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~--- 283 (550)
..+++..+-.++..+.-.+ -.+.. ..+- .++|++|+||+|||++.++.|..++. +++.+||.++...
T Consensus 403 ~~~~~~~~~~l~~vl~p~~--~~s~~-~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~------h~~evdc~el~~~s~~ 473 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQK--QPSGA-LLTLNPSVLLHGPPGSGKTTVVRAVASELGL------HLLEVDCYELVAESAS 473 (953)
T ss_pred CccchHHHHHHHHHhCccc--Ccchh-ccccceEEEEeCCCCCChHHHHHHHHHHhCC------ceEeccHHHHhhcccc
Confidence 4566666665555554331 00100 1122 69999999999999999999999988 9999999988643
Q ss_pred hhhhhHHhHHHHHHHhCCCCeEEeccccccC--------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCCh
Q 036633 284 ESIKHFFDSLAALVKKRPYSVVLFDKIEKAN--------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKD 355 (550)
Q Consensus 284 ~~~s~liG~lt~al~~~p~~VlllDEIeka~--------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~ 355 (550)
|...++.-.+..+ +.++..||||-.+|-+. -.++..+-..+... --+.++..+|+|+|++..
T Consensus 474 ~~etkl~~~f~~a-~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e--------~~~~~~~~~ivv~t~~s~- 543 (953)
T KOG0736|consen 474 HTETKLQAIFSRA-RRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNE--------DFKFSCPPVIVVATTSSI- 543 (953)
T ss_pred hhHHHHHHHHHHH-hhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcc--------cccCCCCceEEEEecccc-
Confidence 4445554444444 44455888887766432 23344443333311 112355778899988753
Q ss_pred HHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHH
Q 036633 356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEE 413 (550)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~ 413 (550)
+.+++.+.+-+-..|.+. -+++++..+|++.++..
T Consensus 544 --------------------~~lp~~i~~~f~~ei~~~---~lse~qRl~iLq~y~~~ 578 (953)
T KOG0736|consen 544 --------------------EDLPADIQSLFLHEIEVP---ALSEEQRLEILQWYLNH 578 (953)
T ss_pred --------------------ccCCHHHHHhhhhhccCC---CCCHHHHHHHHHHHHhc
Confidence 577888888887788888 99999999999988853
No 254
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.39 E-value=1.8e-07 Score=97.32 Aligned_cols=194 Identities=14% Similarity=0.131 Sum_probs=101.7
Q ss_pred HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC--c----CCC-eeEEEeccCCCcHHHHHHHHHHHhccCCC
Q 036633 195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS--R----RQL-GLFLFAGPNCSGKAELAKAIANELYDNND 267 (550)
Q Consensus 195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~--~----~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~ 267 (550)
+.+..+-..+--.|+|.+.++..|.=++-. |... + .|. -++||+|.||||||.+.+.+++...+
T Consensus 13 ~~~~~l~~s~aP~i~g~~~iK~aill~L~~------~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr--- 83 (331)
T PF00493_consen 13 NIFDRLANSIAPSIYGHEDIKKAILLQLFG------GVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR--- 83 (331)
T ss_dssp THHHCCHHHCSSTTTT-HHHHHHHCCCCTT--------SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS---
T ss_pred cHHHHHHHHhCCcCcCcHHHHHHHHHHHHh------ccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc---
Confidence 456677788889999998877664333322 2211 1 123 79999999999999999988766543
Q ss_pred CCCceeEEecCCCCchhh---hh--hHHh--H-HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeE
Q 036633 268 NDNHLIHFDMGNYTELES---IK--HFFD--S-LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339 (550)
Q Consensus 268 ~~~~li~id~s~~~~~~~---~s--~liG--~-lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~ 339 (550)
-+..+...-+..+- +. ..-| . -.+++-...+||+++||++|++.+..+.|+++||.|++. +..+|..
T Consensus 84 ----~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~is-i~kagi~ 158 (331)
T PF00493_consen 84 ----SVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTIS-IAKAGIV 158 (331)
T ss_dssp ----EEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEE-ECTSSSE
T ss_pred ----eEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeec-cchhhhc
Confidence 22222111110000 00 0011 0 012333345689999999999999999999999999444 4333533
Q ss_pred eec-CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEe-cCCCCCCHHHHHHHHHHHHHH
Q 036633 340 FDL-TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVI-DLAVPLLDTTRLLLREWACEE 413 (550)
Q Consensus 340 vd~-~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f-~~~~pL~~e~i~~I~~~~l~~ 413 (550)
..+ .+|-|++++|......... ..+.+ .-.+++.|++|||-++.+ + +.+.+.=..++.+.+..
T Consensus 159 ~~l~ar~svlaa~NP~~g~~~~~------~~~~~--ni~l~~~LLSRFDLif~l~D---~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 159 TTLNARCSVLAAANPKFGRYDPN------KSLSE--NINLPPPLLSRFDLIFLLRD---KPDEEEDERLAEHILDS 223 (331)
T ss_dssp EEEE---EEEEEE--TT--S-TT------S-CGC--CT-S-CCCHCC-SEEECC-----TTT-HHHHHHHHHHHTT
T ss_pred ccccchhhhHHHHhhhhhhcchh------hhhHH--hcccchhhHhhcCEEEEecc---ccccccccccceEEEec
Confidence 322 4566888888753221110 00000 013788999999977554 5 55655555666655543
No 255
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.38 E-value=5.8e-06 Score=90.65 Aligned_cols=209 Identities=16% Similarity=0.213 Sum_probs=110.0
Q ss_pred ccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC-CCCCceeE--E--ecCCCC
Q 036633 208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN-DNDNHLIH--F--DMGNYT 281 (550)
Q Consensus 208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~~li~--i--d~s~~~ 281 (550)
+.-+..-++.|...+... ..+ ..+ ..+||+||||||||++++.||+.+...- ....|... - ...+|.
T Consensus 21 LavhkkKv~eV~~wl~~~---~~~----~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~ 93 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEM---FSG----SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFE 93 (519)
T ss_pred hhccHHHHHHHHHHHHHH---hcc----CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccccccccccc
Confidence 344555666777777655 222 223 6999999999999999999999986410 01111110 0 000111
Q ss_pred chh-hhhhHHh---HHHHH-HHh--------------CCCCeEEeccccccC----HHHHHHHHHhhhhccccccccCCe
Q 036633 282 ELE-SIKHFFD---SLAAL-VKK--------------RPYSVVLFDKIEKAN----SSILNLLLKILKTDFNRKATRGIA 338 (550)
Q Consensus 282 ~~~-~~s~liG---~lt~a-l~~--------------~p~~VlllDEIeka~----~~v~~~Ll~~ld~g~~~~l~d~g~ 338 (550)
... ....+.+ .|.+. ++. ....|||+||+-... ....+.|.+++..+ + .
T Consensus 94 s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~--~-~----- 165 (519)
T PF03215_consen 94 SDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSS--R-C----- 165 (519)
T ss_pred ccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcC--C-C-----
Confidence 000 0000111 11111 111 123599999986532 34566666666655 3 1
Q ss_pred EeecCCeEEEEe--CCC-ChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHH
Q 036633 339 AFDLTNTLIIMT--SDL-KDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEE 413 (550)
Q Consensus 339 ~vd~~~~iiI~T--sN~-g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~ 413 (550)
.=.|||+| -+. |.... ....-.....|++++++ ++ .+|.|+ |....-+.+.+.+.+..
T Consensus 166 ----~PlV~iiSe~~~~~~~~~~---------~~~~~t~~~L~~~~il~~~~i-~~I~FN---pIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 166 ----LPLVFIISETESLSGDNSY---------RSNSFTAERLFPKEILNHPGI-TRIKFN---PIAPTFMKKALKRILKK 228 (519)
T ss_pred ----CCEEEEEecccccCCCCcc---------cccchhhhhccCHHHHhCCCc-eEEEec---CCCHHHHHHHHHHHHHH
Confidence 02445555 111 11000 00001123578999986 45 589999 99999898888888765
Q ss_pred HHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 414 TKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 414 ~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
-.+..... . ...-..++++.|+..+. -+||.+|..
T Consensus 229 E~~~~~~~-~-~~p~~~~~l~~I~~~s~-------GDIRsAIn~ 263 (519)
T PF03215_consen 229 EARSSSGK-N-KVPDKQSVLDSIAESSN-------GDIRSAINN 263 (519)
T ss_pred HhhhhcCC-c-cCCChHHHHHHHHHhcC-------chHHHHHHH
Confidence 43332211 1 11222456888887421 457777774
No 256
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.36 E-value=6.1e-06 Score=89.98 Aligned_cols=220 Identities=11% Similarity=0.104 Sum_probs=123.4
Q ss_pred HHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC--cCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCce
Q 036633 196 RYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS--RRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHL 272 (550)
Q Consensus 196 ~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~--~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~l 272 (550)
....|.+.+.-.|+|.++.++.+.=++--.. +..... .-+. -++||+|.||||||-+.+.+++.+.+ ..
T Consensus 419 iy~lLa~SiAPsIye~edvKkglLLqLfGGt--~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pR------g~ 490 (804)
T KOG0478|consen 419 IYELLARSIAPSIYELEDVKKGLLLQLFGGT--RKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPR------GV 490 (804)
T ss_pred HHHHHHHhhchhhhcccchhhhHHHHHhcCC--cccccccccccccceEEEecCCCcCHHHHHHHHHHhCCc------ce
Confidence 3556677788889999999988776664321 111111 1123 68999999999999999999999865 11
Q ss_pred eEE-------ecCCCCchhh-hhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC--CeEeec
Q 036633 273 IHF-------DMGNYTELES-IKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG--IAAFDL 342 (550)
Q Consensus 273 i~i-------d~s~~~~~~~-~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~--g~~vd~ 342 (550)
+.- -+..|..... ...++ .-++|+--..++|-.|||++|++.+..+.|+++||.. + ++-. |--..|
T Consensus 491 yTSGkGsSavGLTayVtrd~dtkqlV-LesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQ--T-vSIAKAGII~sL 566 (804)
T KOG0478|consen 491 YTSGKGSSAVGLTAYVTKDPDTRQLV-LESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQ--T-LSIAKAGIIASL 566 (804)
T ss_pred eecCCccchhcceeeEEecCccceee-eecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHh--h-hhHhhcceeeec
Confidence 110 0000000000 00000 1122333345689999999999999999999999988 4 4444 433322
Q ss_pred -CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc-CCChhhhhhcccee-EecCCCCCCHHHHHHHHHHHH--------
Q 036633 343 -TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS-LFKPSLLKLLDKLV-VIDLAVPLLDTTRLLLREWAC-------- 411 (550)
Q Consensus 343 -~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~-~f~p~ll~Rid~ii-~f~~~~pL~~e~i~~I~~~~l-------- 411 (550)
-++=|++++|.-....+. -...++. .++|.|++|||-|+ .|+ +-++..=..++.+..
T Consensus 567 NAR~SVLAaANP~~skynp---------~k~i~eNI~LpptLLSRFDLIylllD---~~DE~~Dr~La~HivsLy~e~~~ 634 (804)
T KOG0478|consen 567 NARCSVLAAANPIRSKYNP---------NKSIIENINLPPTLLSRFDLIFLLLD---KPDERSDRRLADHIVALYPETGE 634 (804)
T ss_pred cccceeeeeeccccccCCC---------CCchhhccCCChhhhhhhcEEEEEec---CcchhHHHHHHHHHHHhcccccc
Confidence 124466666632111111 0001111 46899999998653 334 333321122222222
Q ss_pred -----------HHHHHHhccCCCccccCCHHHHHHHHhcC
Q 036633 412 -----------EETKRRNNDSKAVIVCPSTSALVHIASNA 440 (550)
Q Consensus 412 -----------~~~~~~l~~~~~~~l~~~~~a~~~L~~~~ 440 (550)
-+..-+++...+ .-.+++++...+....
T Consensus 635 ~~~~~~~d~~~lr~yi~yArk~i-~p~l~~ea~~~l~~ay 673 (804)
T KOG0478|consen 635 KQGSEAIDMNLLRDYIRYARKNI-HPALSPEASQALIQAY 673 (804)
T ss_pred cchhHHHhHHHHHHHHHHHhccC-CccccHHHHHHHHHHh
Confidence 122223344555 6678889888887643
No 257
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.35 E-value=6.4e-06 Score=86.83 Aligned_cols=141 Identities=13% Similarity=0.243 Sum_probs=89.2
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEec
Q 036633 166 KLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAG 245 (550)
Q Consensus 166 ~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~G 245 (550)
+...|.++.-+++-+..|.-...+.. ..++..|. ++...+.+. .++++.|
T Consensus 167 R~~FT~dEWid~LlrSiG~~P~~~~~--r~k~~~L~---------------rl~~fve~~-------------~Nli~lG 216 (449)
T TIGR02688 167 RKEFTLEEWIDVLIRSIGYEPEGFEA--RQKLLLLA---------------RLLPLVEPN-------------YNLIELG 216 (449)
T ss_pred HhhcCHHHHHHHHHHhcCCCcccCCh--HHHHHHHH---------------hhHHHHhcC-------------CcEEEEC
Confidence 55677777777777778876665532 22222221 111223322 5999999
Q ss_pred cCCCcHHHHHHHHHHHh-ccCCCCCCceeEEecCCCCchhhhhhHHhHHHH-HHHh-CCCCeEEeccccccC----HHHH
Q 036633 246 PNCSGKAELAKAIANEL-YDNNDNDNHLIHFDMGNYTELESIKHFFDSLAA-LVKK-RPYSVVLFDKIEKAN----SSIL 318 (550)
Q Consensus 246 p~GvGKT~lAk~la~~l-~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~-al~~-~p~~VlllDEIeka~----~~v~ 318 (550)
|+|||||++|.+|+... .. .. .| .+.+.|+..+.. .+.. ..+.+|+|||+...+ .++.
T Consensus 217 p~GTGKThla~~l~~~~a~~----sG--------~f---~T~a~Lf~~L~~~~lg~v~~~DlLI~DEvgylp~~~~~~~v 281 (449)
T TIGR02688 217 PKGTGKSYIYNNLSPYVILI----SG--------GT---ITVAKLFYNISTRQIGLVGRWDVVAFDEVATLKFAKPKELI 281 (449)
T ss_pred CCCCCHHHHHHHHhHHHHHH----cC--------Cc---CcHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcCCchHHHH
Confidence 99999999999998772 22 00 11 145566664332 2221 345899999998843 4688
Q ss_pred HHHHHhhhhccccccccCCeEeecCCeEEEEeCCCCh
Q 036633 319 NLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKD 355 (550)
Q Consensus 319 ~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~ 355 (550)
+.|-..|++| . ++.++ ..--.++=++|..|...
T Consensus 282 ~imK~yMesg--~-fsRG~-~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 282 GILKNYMESG--S-FTRGD-ETKSSDASFVFLGNVPL 314 (449)
T ss_pred HHHHHHHHhC--c-eeccc-eeeeeeeEEEEEcccCC
Confidence 9999999999 7 77762 22235566888888764
No 258
>PF05729 NACHT: NACHT domain
Probab=98.34 E-value=7.3e-06 Score=75.52 Aligned_cols=137 Identities=16% Similarity=0.268 Sum_probs=82.8
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCC---CceeEEecCCCCchh---hhhhHHh------------HHHHHHHhCC
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDND---NHLIHFDMGNYTELE---SIKHFFD------------SLAALVKKRP 301 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~---~~li~id~s~~~~~~---~~s~liG------------~lt~al~~~p 301 (550)
.++++|+||+|||++++.++..+....... .-.+.+++..+.... ....++. .+.......+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 689999999999999999998876532111 124456666665443 2222222 1233445566
Q ss_pred CCeEEeccccccCHH--------HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHH
Q 036633 302 YSVVLFDKIEKANSS--------ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEV 373 (550)
Q Consensus 302 ~~VlllDEIeka~~~--------v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~ 373 (550)
..+++||-+|.+... ..+.|.+++... . +.++-+++||.......
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~--~----------~~~~~liit~r~~~~~~--------------- 134 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA--L----------PPGVKLIITSRPRAFPD--------------- 134 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc--c----------CCCCeEEEEEcCChHHH---------------
Confidence 678999999888763 334555666542 1 13444666665432110
Q ss_pred hccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633 374 TGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACE 412 (550)
Q Consensus 374 l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~ 412 (550)
+...+... ..+... ||+++++.+.++.++.
T Consensus 135 ~~~~~~~~------~~~~l~---~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 135 LRRRLKQA------QILELE---PFSEEDIKQYLRKYFS 164 (166)
T ss_pred HHHhcCCC------cEEEEC---CCCHHHHHHHHHHHhh
Confidence 11122111 467788 9999999999988774
No 259
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.29 E-value=6.4e-06 Score=84.82 Aligned_cols=200 Identities=16% Similarity=0.205 Sum_probs=120.9
Q ss_pred hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633 204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL 283 (550)
Q Consensus 204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~ 283 (550)
....++|-++++.++++.++.+ ..|+.. +..+++|.||+|+|||++++.|-+.+-. .++..+..+...+.
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~A---A~g~~~--~krIl~L~GPvg~GKSsl~~~Lk~~le~-----y~~Y~l~~~Pm~e~ 128 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSA---AQGLEE--RKRILLLLGPVGGGKSSLAELLKRGLEE-----YPIYTLKGCPMHEE 128 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHH---HhccCc--cceEEEEECCCCCCHHHHHHHHHHHhhe-----EEEEEecCCccccC
Confidence 4467999999999999999987 666632 2269999999999999999999987733 12222211111100
Q ss_pred ---------------------------------------------------------------------hhhhhHHh---
Q 036633 284 ---------------------------------------------------------------------ESIKHFFD--- 291 (550)
Q Consensus 284 ---------------------------------------------------------------------~~~s~liG--- 291 (550)
...+.|.|
T Consensus 129 PL~L~P~~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y~Gd~~~~~V~r~~~S~~~r~GI~~f~P~D~~~qd~s~LtG~vd 208 (358)
T PF08298_consen 129 PLHLFPKELRREFEDELGIRIEGELCPWCRKRLLEEYGGDIEKFRVERLYFSERDRVGIGTFEPGDEKNQDISDLTGSVD 208 (358)
T ss_pred hhhhCCHhHHHHHHHHhCcccCCCcCHHHHHHHHHHhCCCccEEEEEEEccceecceeEEEECCCCCCCcchhhhhhHHH
Confidence 01223333
Q ss_pred --HHHH-------------HHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChH
Q 036633 292 --SLAA-------------LVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDE 356 (550)
Q Consensus 292 --~lt~-------------al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~ 356 (550)
.+.. .+.....|++=|=|+-|++.+.+--||.+.++|.+. .+...-.+++ +.+||..||..
T Consensus 209 ~~kl~~~s~~dp~af~~~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik-~~~~~~~i~~-D~liiAhsNe~-- 284 (358)
T PF08298_consen 209 IRKLAEYSESDPRAFSYSGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIK-VDEDFGMIPF-DELIIAHSNEE-- 284 (358)
T ss_pred HHHHhhhccCCCeeEeeccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCcee-cCCccccccc-ceeEEecCCHH--
Confidence 1111 122222356666688899999999999999999333 2222333444 46889999931
Q ss_pred HHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHH
Q 036633 357 QVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI 436 (550)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L 436 (550)
... +-......++|.+|| .+|.++ =.|+-.+=.+|-+..+.+ ..+....+.|.+++.+
T Consensus 285 E~~------------~f~~~~~~eAf~DRi-~~I~VP--Y~L~~s~E~kIY~k~~~~-------s~l~~~h~aP~~L~~a 342 (358)
T PF08298_consen 285 EYN------------KFKNNKNNEAFKDRI-EVIKVP--YCLRVSEEVKIYEKLIGK-------SDLRDAHIAPHTLEMA 342 (358)
T ss_pred HHH------------HHhccccchhhhhhe-EEEecc--ccCCHHHHHHHHHHHhhh-------ccccccccCchHHHHH
Confidence 111 111234468899999 666664 123445555666655532 1111347788888877
Q ss_pred Hhc
Q 036633 437 ASN 439 (550)
Q Consensus 437 ~~~ 439 (550)
+..
T Consensus 343 A~f 345 (358)
T PF08298_consen 343 ARF 345 (358)
T ss_pred HHH
Confidence 753
No 260
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=1.2e-05 Score=84.65 Aligned_cols=189 Identities=16% Similarity=0.204 Sum_probs=125.0
Q ss_pred hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCC--ceeEEecCCC
Q 036633 203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDN--HLIHFDMGNY 280 (550)
Q Consensus 203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~--~li~id~s~~ 280 (550)
.-...++|.+.-++.+...+..++ ..+.++++.+.|-||||||.+..-+-..+.. ... ..+.+||..+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hl-------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~---~~~~~~~v~inc~sl 216 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHL-------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSK---SSKSPVTVYINCTSL 216 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhh-------hcccCcceEeeCCCCcchHHHHHHHHHhhhh---hcccceeEEEeeccc
Confidence 345789999999999999998872 3446699999999999999987755544433 222 2378899887
Q ss_pred Cchhhh-hhHHh-----------------HHHHHHHh-CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEee
Q 036633 281 TELESI-KHFFD-----------------SLAALVKK-RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341 (550)
Q Consensus 281 ~~~~~~-s~liG-----------------~lt~al~~-~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd 341 (550)
.+..++ ..+++ .|...... ++-=|+++||+|.+...-+..|+.+++-. . +..
T Consensus 217 ~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp--~-lp~------ 287 (529)
T KOG2227|consen 217 TEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP--K-LPN------ 287 (529)
T ss_pred cchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc--c-CCc------
Confidence 776553 22222 12222222 21238899999999888888888888766 4 321
Q ss_pred cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhc---cceeEecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 036633 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLL---DKLVVIDLAVPLLDTTRLLLREWACEETKRRN 418 (550)
Q Consensus 342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Ri---d~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l 418 (550)
++.++|--+|.- . +.+.|-|-|..|+ ..++.|. ||+.++|.+|+...+....
T Consensus 288 -sr~iLiGiANsl--D----------------lTdR~LprL~~~~~~~P~~l~F~---PYTk~qI~~Il~~rl~~~~--- 342 (529)
T KOG2227|consen 288 -SRIILIGIANSL--D----------------LTDRFLPRLNLDLTIKPKLLVFP---PYTKDQIVEILQQRLSEES--- 342 (529)
T ss_pred -ceeeeeeehhhh--h----------------HHHHHhhhhhhccCCCCceeeec---CCCHHHHHHHHHHHHhccc---
Confidence 333444434421 0 1234444454444 3589999 9999999999998885411
Q ss_pred ccCCCccccCCHHHHHHHHhcCc
Q 036633 419 NDSKAVIVCPSTSALVHIASNAA 441 (550)
Q Consensus 419 ~~~~~~~l~~~~~a~~~L~~~~~ 441 (550)
+..+-+.+++.++....
T Consensus 343 ------t~~~~~~Aie~~ArKva 359 (529)
T KOG2227|consen 343 ------TSIFLNAAIELCARKVA 359 (529)
T ss_pred ------ccccchHHHHHHHHHhc
Confidence 33455678888888665
No 261
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=3.4e-05 Score=75.49 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=91.5
Q ss_pred eeEEEeccCC-CcHHHHHHHHHHHhccCC---CCCCceeEEecCCCCchhhhhhHHh-----HHHHHHHhCC----CCeE
Q 036633 239 GLFLFAGPNC-SGKAELAKAIANELYDNN---DNDNHLIHFDMGNYTELESIKHFFD-----SLAALVKKRP----YSVV 305 (550)
Q Consensus 239 ~~lLf~Gp~G-vGKT~lAk~la~~l~~~~---~~~~~li~id~s~~~~~~~~s~liG-----~lt~al~~~p----~~Vl 305 (550)
...||.|..+ +||..++..+++.++..+ .....+..+.-.. .. ..-+..+| .+.+.+..+| +.|+
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~-~~-~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARET-SA-TSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccc-cc-cccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 7999999998 999999999999987632 1122233332110 00 00012233 4445554444 5699
Q ss_pred EeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhh
Q 036633 306 LFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKL 385 (550)
Q Consensus 306 llDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R 385 (550)
+++++|++++...|.||++||+. . .+++||++|+.. ....|-++||
T Consensus 94 II~~ae~mt~~AANALLKtLEEP--P-----------~~t~fILit~~~---------------------~~LLpTIrSR 139 (263)
T PRK06581 94 IIYSAELMNLNAANSCLKILEDA--P-----------KNSYIFLITSRA---------------------ASIISTIRSR 139 (263)
T ss_pred EEechHHhCHHHHHHHHHhhcCC--C-----------CCeEEEEEeCCh---------------------hhCchhHhhc
Confidence 99999999999999999999998 6 678888866543 3566789999
Q ss_pred ccceeEecCCCCCCHHHHHHHHHHHH
Q 036633 386 LDKLVVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 386 id~ii~f~~~~pL~~e~i~~I~~~~l 411 (550)
| ..+.|. +.......++...++
T Consensus 140 C-q~i~~~---~p~~~~~~e~~~~~~ 161 (263)
T PRK06581 140 C-FKINVR---SSILHAYNELYSQFI 161 (263)
T ss_pred e-EEEeCC---CCCHHHHHHHHHHhc
Confidence 9 899999 666655555554444
No 262
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.16 E-value=1.9e-06 Score=74.68 Aligned_cols=96 Identities=21% Similarity=0.322 Sum_probs=59.4
Q ss_pred EEEeccCCCcHHHHHHHHHHHhccCC--CCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHH--
Q 036633 241 FLFAGPNCSGKAELAKAIANELYDNN--DNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSS-- 316 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l~~~~--~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~-- 316 (550)
+.|+||||+|||++|+.|++.+...- .....++..+.. ..+ -..-+ ...++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~--------~~~----w~gY~--~q~vvi~DD~~~~~~~~~ 66 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPG--------DKF----WDGYQ--GQPVVIIDDFGQDNDGYN 66 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCc--------cch----hhccC--CCcEEEEeecCccccccc
Confidence 47899999999999999998887510 011122221110 000 11111 2259999999888754
Q ss_pred --HHHHHHHhhhhccccccccC-----CeEeecCCeEEEEeCCC
Q 036633 317 --ILNLLLKILKTDFNRKATRG-----IAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 317 --v~~~Ll~~ld~g~~~~l~d~-----g~~vd~~~~iiI~TsN~ 353 (550)
....|+++++.. . +.-. .+..-|.--+||+|||.
T Consensus 67 ~~~~~~l~~l~s~~--~-~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 67 YSDESELIRLISSN--P-FQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred hHHHHHHHHHHhcC--C-cccccccHhhCCCccCCCEEEEcCCC
Confidence 788899999877 4 3332 12245555688999984
No 263
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.14 E-value=2.2e-05 Score=79.60 Aligned_cols=148 Identities=20% Similarity=0.291 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-hhhHH
Q 036633 212 NDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-IKHFF 290 (550)
Q Consensus 212 ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-~s~li 290 (550)
+.-+++|...+... . +...++.++|++|+|||++|..+++.....+ .-+..+.++++....... ...+.
T Consensus 2 e~~~~~l~~~L~~~---~------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~-~f~~v~wv~~~~~~~~~~~~~~i~ 71 (287)
T PF00931_consen 2 EKEIEKLKDWLLDN---S------NEVRVVAIVGMGGIGKTTLARQVARDLRIKN-RFDGVIWVSLSKNPSLEQLLEQIL 71 (287)
T ss_dssp HHHHHHHHHHHHTT---T------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCC-CCTEEEEEEEES-SCCHHHHHHHH
T ss_pred HHHHHHHHHHhhCC---C------CCeEEEEEEcCCcCCcceeeeeccccccccc-cccccccccccccccccccccccc
Confidence 45667777777764 1 2338999999999999999999997732100 223455666665432211 11111
Q ss_pred --------------------hHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEe
Q 036633 291 --------------------DSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMT 350 (550)
Q Consensus 291 --------------------G~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~T 350 (550)
..+.+.++.+ ..+|+||+++... .++.+...+..+ . .++.||+|
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~LlVlDdv~~~~--~~~~l~~~~~~~--~-----------~~~kilvT 135 (287)
T PF00931_consen 72 RQLGEPDSSISDPKDIEELQDQLRELLKDK-RCLLVLDDVWDEE--DLEELREPLPSF--S-----------SGSKILVT 135 (287)
T ss_dssp HHHTCC-STSSCCSSHHHHHHHHHHHHCCT-SEEEEEEEE-SHH--HH-------HCH--H-----------SS-EEEEE
T ss_pred ccccccccccccccccccccccchhhhccc-cceeeeeeecccc--cccccccccccc--c-----------cccccccc
Confidence 1334444445 4799999998544 444444444332 1 24557778
Q ss_pred CCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633 351 SDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 351 sN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l 411 (550)
|.... ... ..+.-+..+.+. +|+.++-..++....
T Consensus 136 TR~~~----------------------v~~-~~~~~~~~~~l~---~L~~~ea~~L~~~~~ 170 (287)
T PF00931_consen 136 TRDRS----------------------VAG-SLGGTDKVIELE---PLSEEEALELFKKRA 170 (287)
T ss_dssp ESCGG----------------------GGT-THHSCEEEEECS---S--HHHHHHHHHHHH
T ss_pred ccccc----------------------ccc-cccccccccccc---ccccccccccccccc
Confidence 75311 000 111113678888 999999888877665
No 264
>PHA00729 NTP-binding motif containing protein
Probab=98.12 E-value=2.8e-05 Score=75.91 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=23.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
.+++++||||||||++|.+|++.+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999874
No 265
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.11 E-value=0.00024 Score=71.99 Aligned_cols=242 Identities=14% Similarity=0.123 Sum_probs=132.0
Q ss_pred CccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcC--CCeeEEEe
Q 036633 167 LAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRR--QLGLFLFA 244 (550)
Q Consensus 167 ~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~--~p~~lLf~ 244 (550)
+.|+-.++..-+..+...| +.+++.. .-..+.||-..|.+.+.. +... +..|. ++.++|++
T Consensus 5 ~~~d~~HL~~~~~~~~~l~-------~~eRI~~---i~~~rWIgY~~A~~~L~~-L~~L------l~~P~~~Rmp~lLiv 67 (302)
T PF05621_consen 5 PIVDYSHLHPDARELLQLS-------DEERIAY---IRADRWIGYPRAKEALDR-LEEL------LEYPKRHRMPNLLIV 67 (302)
T ss_pred cccchhhcCHHHHHHHhcC-------HHHHHHH---HhcCCeecCHHHHHHHHH-HHHH------HhCCcccCCCceEEe
Confidence 3455555555555444443 2344433 346889999988755433 2221 22343 33899999
Q ss_pred ccCCCcHHHHHHHHHHHhccCC---CCCCceeEEecCCCCchhhh-hhH---Hh--------------HHHHHHHhCCCC
Q 036633 245 GPNCSGKAELAKAIANELYDNN---DNDNHLIHFDMGNYTELESI-KHF---FD--------------SLAALVKKRPYS 303 (550)
Q Consensus 245 Gp~GvGKT~lAk~la~~l~~~~---~~~~~li~id~s~~~~~~~~-s~l---iG--------------~lt~al~~~p~~ 303 (550)
|+||.|||++++...+.-.... ...-|++.+.|..-.+.... ..+ +| .....++...-.
T Consensus 68 G~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vr 147 (302)
T PF05621_consen 68 GDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVR 147 (302)
T ss_pred cCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCc
Confidence 9999999999999987654321 12237888888665543321 111 12 233455666668
Q ss_pred eEEecccccc---CHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCCh
Q 036633 304 VVLFDKIEKA---NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKP 380 (550)
Q Consensus 304 VlllDEIeka---~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p 380 (550)
+|+|||++.+ +..-|..++.+|.. + |.....+ ||+. |...... ++ .=+|
T Consensus 148 mLIIDE~H~lLaGs~~~qr~~Ln~LK~-----L---~NeL~ip---iV~v---Gt~~A~~------------al--~~D~ 199 (302)
T PF05621_consen 148 MLIIDEFHNLLAGSYRKQREFLNALKF-----L---GNELQIP---IVGV---GTREAYR------------AL--RTDP 199 (302)
T ss_pred EEEeechHHHhcccHHHHHHHHHHHHH-----H---hhccCCC---eEEe---ccHHHHH------------Hh--ccCH
Confidence 9999999874 33445555555431 1 1111111 5553 3222211 11 1257
Q ss_pred hhhhhccceeEecCCCCCCH-HHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcchh
Q 036633 381 SLLKLLDKLVVIDLAVPLLD-TTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQRP 459 (550)
Q Consensus 381 ~ll~Rid~ii~f~~~~pL~~-e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~~~ 459 (550)
.+-+|+ ..+..+ +... ++...++ ..+...+--..-..+ -+++...+|...+- | ++-.+.+++.. .
T Consensus 200 QLa~RF-~~~~Lp---~W~~d~ef~~LL----~s~e~~LPLr~~S~l-~~~~la~~i~~~s~---G-~iG~l~~ll~~-a 265 (302)
T PF05621_consen 200 QLASRF-EPFELP---RWELDEEFRRLL----ASFERALPLRKPSNL-ASPELARRIHERSE---G-LIGELSRLLNA-A 265 (302)
T ss_pred HHHhcc-CCccCC---CCCCCcHHHHHH----HHHHHhCCCCCCCCC-CCHHHHHHHHHHcC---C-chHHHHHHHHH-H
Confidence 899999 566666 5554 4454443 334444321111012 35566677776443 5 67778888886 3
Q ss_pred hHHHHHhh
Q 036633 460 SADHVIDK 467 (550)
Q Consensus 460 la~~~l~~ 467 (550)
-..++-+|
T Consensus 266 A~~AI~sG 273 (302)
T PF05621_consen 266 AIAAIRSG 273 (302)
T ss_pred HHHHHhcC
Confidence 33444443
No 266
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.11 E-value=2.3e-05 Score=86.12 Aligned_cols=205 Identities=13% Similarity=0.137 Sum_probs=134.6
Q ss_pred hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccC---C-CCCCceeEEecC
Q 036633 204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDN---N-DNDNHLIHFDMG 278 (550)
Q Consensus 204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~---~-~~~~~li~id~s 278 (550)
....+-+.+.-...|...++.. +.. ... +.|.+.|-||||||.+...+-+.|-.. + ...=.++.||.-
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~------i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm 466 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSF------ISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGL 466 (767)
T ss_pred ccccccchhHHHHHHHHHHHhh------cCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcce
Confidence 4567788888888888887766 322 223 589999999999999999988877521 1 133356778877
Q ss_pred CCCchhhhhhHH-----h------HHHHHHH--------hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeE
Q 036633 279 NYTELESIKHFF-----D------SLAALVK--------KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339 (550)
Q Consensus 279 ~~~~~~~~s~li-----G------~lt~al~--------~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~ 339 (550)
.+.....+...| | .-.++++ .++-.||++||.|-+-..-|++|+.+++-. . ...
T Consensus 467 ~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp--t-~~~---- 539 (767)
T KOG1514|consen 467 RLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP--T-LKN---- 539 (767)
T ss_pred eecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC--c-CCC----
Confidence 777665543222 1 1111121 233469999999999888899999999876 4 433
Q ss_pred eecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc-ceeEecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 036633 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD-KLVVIDLAVPLLDTTRLLLREWACEETKRRN 418 (550)
Q Consensus 340 vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid-~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l 418 (550)
+..+||+-+|-.. .-++.|.+-.-+|++ .-+.|. |++.+++.+|+...|..+
T Consensus 540 ---sKLvvi~IaNTmd-----------------lPEr~l~nrvsSRlg~tRi~F~---pYth~qLq~Ii~~RL~~~---- 592 (767)
T KOG1514|consen 540 ---SKLVVIAIANTMD-----------------LPERLLMNRVSSRLGLTRICFQ---PYTHEQLQEIISARLKGL---- 592 (767)
T ss_pred ---CceEEEEeccccc-----------------CHHHHhccchhhhccceeeecC---CCCHHHHHHHHHHhhcch----
Confidence 4456677666421 001233333446664 358999 999999999999888542
Q ss_pred ccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 419 NDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 419 ~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
-.|++++.+.++.+-..-.| ..|-...++++
T Consensus 593 -------~~f~~~aielvarkVAavSG-DaRraldic~R 623 (767)
T KOG1514|consen 593 -------DAFENKAIELVARKVAAVSG-DARRALDICRR 623 (767)
T ss_pred -------hhcchhHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 25688898888875442234 22655555555
No 267
>PHA02774 E1; Provisional
Probab=98.10 E-value=8e-06 Score=88.99 Aligned_cols=122 Identities=15% Similarity=0.221 Sum_probs=75.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEecccccc-CHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKA-NSSI 317 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka-~~~v 317 (550)
..++|+||||||||.+|-+|.+.+.+ . .+..+|... .-.++.|.++ .|++||++-.. ..-+
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G---~--vi~fvN~~s-------~FwLqpl~d~------ki~vlDD~t~~~w~y~ 496 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKG---K--VISFVNSKS-------HFWLQPLADA------KIALLDDATHPCWDYI 496 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC---C--EEEEEECcc-------ccccchhccC------CEEEEecCcchHHHHH
Confidence 69999999999999999999999976 1 233355311 0112222322 59999999333 2234
Q ss_pred HHHHHHhhhhccccccccC---CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecC
Q 036633 318 LNLLLKILKTDFNRKATRG---IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDL 394 (550)
Q Consensus 318 ~~~Ll~~ld~g~~~~l~d~---g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~ 394 (550)
...|..+|+.. . +.-. ...+..+..-+|.|||.+.... ..| ..|-+|+ .++.|.-
T Consensus 497 d~~Lrn~LdG~--~-v~lD~Khk~~~q~k~pPlIITSN~d~~~~-----------------~~~-~yL~sRi-~~f~F~n 554 (613)
T PHA02774 497 DTYLRNALDGN--P-VSIDCKHKAPVQIKCPPLLITSNIDVKAE-----------------DRY-KYLHSRI-TVFEFPN 554 (613)
T ss_pred HHHHHHHcCCC--c-ceeeecccCcccccCCCEEEecCCCcccc-----------------hhh-HHhhhhE-EEEECCC
Confidence 44666666554 2 2222 2334445566889999865331 122 2366899 7888887
Q ss_pred CCCCCH
Q 036633 395 AVPLLD 400 (550)
Q Consensus 395 ~~pL~~ 400 (550)
|-||+.
T Consensus 555 ~~P~d~ 560 (613)
T PHA02774 555 PFPLDE 560 (613)
T ss_pred CCCcCC
Confidence 777764
No 268
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.02 E-value=1.1e-05 Score=81.36 Aligned_cols=109 Identities=11% Similarity=-0.010 Sum_probs=78.8
Q ss_pred cCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHH
Q 036633 376 SLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKR 453 (550)
Q Consensus 376 ~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~ 453 (550)
+.| +|++++|| .++.|. ||+.+++..++.+.+.. ...+.. . .+.++++++++|+..+- | -+|-.-+
T Consensus 19 P~f~vn~ALlSR~-~v~~l~---~L~~~di~~il~ral~~-~~~~~~--~-~~~i~~~al~~ia~~a~---G-DaR~aLN 86 (300)
T PRK14700 19 PTYYLNDALVSRL-FILRLK---RLSLVATQKLIEKALSQ-DEVLAK--H-KFKIDDGLYNAMHNYNE---G-DCRKILN 86 (300)
T ss_pred ccceecHhhhhhh-heeeec---CCCHHHHHHHHHHHHHh-hhccCC--c-CCCcCHHHHHHHHHhcC---C-HHHHHHH
Confidence 355 89999999 899999 99999999999999976 222222 2 56899999999998653 3 2254444
Q ss_pred HHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCccccc
Q 036633 454 WMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWW 503 (550)
Q Consensus 454 ~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~ 503 (550)
.++. .+ .+ . .+.+...|+.+..+...+...+.||++|+.||+.
T Consensus 87 ~LE~-a~--~~-~---~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~ 129 (300)
T PRK14700 87 LLER-MF--LI-S---TRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQ 129 (300)
T ss_pred HHHH-HH--hh-c---cccCCCccCHHHHHHHHhHHHhcccCCcchhHHH
Confidence 4442 11 11 1 1112235788888888888999999999999975
No 269
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.02 E-value=2.9e-05 Score=84.27 Aligned_cols=198 Identities=10% Similarity=0.065 Sum_probs=112.2
Q ss_pred HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633 195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI 273 (550)
Q Consensus 195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li 273 (550)
..+.+|-..|--.|+|++.++..|.-.+--.-.+.++-.-+-|. .++|++|.||+||+-+.++.+..+.+ .++
T Consensus 334 nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR------~vY 407 (764)
T KOG0480|consen 334 NLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR------SVY 407 (764)
T ss_pred hHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc------ceE
Confidence 45677788888999999999988877664331112331223344 79999999999999999999998866 221
Q ss_pred EEecCCCCch-h-hhh----hHHhHH---HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec-C
Q 036633 274 HFDMGNYTEL-E-SIK----HFFDSL---AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL-T 343 (550)
Q Consensus 274 ~id~s~~~~~-~-~~s----~liG~l---t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~-~ 343 (550)
. ++..+.. . +++ .--|.+ .+|+--.-.+|-.|||+||++-.-|.++++.||...+. +.-.|....+ .
T Consensus 408 t--sGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtIS-IaKAGv~aTLnA 484 (764)
T KOG0480|consen 408 T--SGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTIS-IAKAGVVATLNA 484 (764)
T ss_pred e--cCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheeh-heecceEEeecc
Confidence 1 1111100 0 000 000111 12222334589999999999998899999999998333 3222432221 1
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l 411 (550)
++-|++++|.-....++ ..-+.+. =.|++++++|||-++.+. -..++..=..|..+.+
T Consensus 485 RtSIlAAANPv~GhYdR------~ktl~eN--i~msApimSRFDL~FiLl--D~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDR------KKTLREN--INMSAPIMSRFDLFFILL--DDCNEVVDYAIARHIL 542 (764)
T ss_pred hhhhhhhcCCcCCcccc------ccchhhh--cCCCchhhhhhcEEEEEe--cCCchHHHHHHHHHHH
Confidence 23345555542111110 0011111 147899999999654443 0444443344444443
No 270
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=0.00045 Score=73.20 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=68.2
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCCCceeEEecCCCCchhh-----hhhHHh----------HHHHHHHh-
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNN-DNDNHLIHFDMGNYTELES-----IKHFFD----------SLAALVKK- 299 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~~li~id~s~~~~~~~-----~s~liG----------~lt~al~~- 299 (550)
+|.+++|+||+|||||+++.-||..+.... .....+.-+++..|..... ....+| .+..++.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 568999999999999999999998764210 0123444455555542211 112122 34444333
Q ss_pred CCCCeEEeccccccCHHH--HHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 300 RPYSVVLFDKIEKANSSI--LNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 300 ~p~~VlllDEIeka~~~v--~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
..+.+|++|.+.+.+.+. +..+.++++.. . . -..+++++.++.+...+..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~--~-~--------~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNAC--G-R--------DAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhc--C-C--------CCeEEEEEcCCCCHHHHHH
Confidence 567899999999998653 34555555433 1 0 0246788888877655543
No 271
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.99 E-value=0.00026 Score=75.67 Aligned_cols=105 Identities=11% Similarity=0.233 Sum_probs=64.1
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH------Hh-------------H-HHHH
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF------FD-------------S-LAAL 296 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l------iG-------------~-lt~a 296 (550)
+|.+++|+||+|+|||+++..||..+.. ......-+++..|.. .+...| .| . ..++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~---~G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~ 174 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR---KGFKPCLVCADTFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEG 174 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCCEEEEcCcccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHH
Confidence 4589999999999999999999988755 334566667666542 111111 11 0 1122
Q ss_pred ---HHhCCCCeEEeccccccCHH--HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHH
Q 036633 297 ---VKKRPYSVVLFDKIEKANSS--ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQ 357 (550)
Q Consensus 297 ---l~~~p~~VlllDEIeka~~~--v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~ 357 (550)
++...+.+||+|=....+.+ ....|.++.+.. +...+++|+.+..|.+.
T Consensus 175 l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~------------~p~e~lLVlda~~Gq~a 228 (429)
T TIGR01425 175 VEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAI------------QPDNIIFVMDGSIGQAA 228 (429)
T ss_pred HHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhc------------CCcEEEEEeccccChhH
Confidence 23457899999999877653 444444443211 12346677777666443
No 272
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.95 E-value=9.4e-05 Score=79.34 Aligned_cols=148 Identities=16% Similarity=0.196 Sum_probs=78.9
Q ss_pred cCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-----------HHHHH------
Q 036633 235 RRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-----------SLAAL------ 296 (550)
Q Consensus 235 ~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-----------~lt~a------ 296 (550)
|+-+ .++|++||+|+|||++.+.|++.++-.-..+.+-+-+...++ .|..+...+ .|.+.
T Consensus 106 ~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~--~h~~t~~~~~~~~s~L~~fesFler~~kyg~ 183 (634)
T KOG1970|consen 106 PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPEN--LHNETSFLMFPYQSQLAVFESFLLRATKYGS 183 (634)
T ss_pred cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccccccc--ccccchhcccchhhHHHHHHHHHHHHHhhch
Confidence 3344 699999999999999999999998651100111111111121 122221111 11111
Q ss_pred HHh------CCCCeEEeccccccC-----HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhh
Q 036633 297 VKK------RPYSVVLFDKIEKAN-----SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTA 365 (550)
Q Consensus 297 l~~------~p~~VlllDEIeka~-----~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~ 365 (550)
+.. ....+||+||+-.+. ...++.|..+...| . + . .||++| +.-....+ .
T Consensus 184 l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g--~-~---------P-lIf~iT-d~~~~g~n-----n 244 (634)
T KOG1970|consen 184 LQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIG--R-C---------P-LIFIIT-DSLSNGNN-----N 244 (634)
T ss_pred hhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHHHhcC--C-C---------c-EEEEEe-ccccCCCc-----c
Confidence 111 112389999985443 23556666566666 4 2 2 334443 32211100 0
Q ss_pred hHhhHHHHhccCCChh--hhhhccceeEecCCCCCCHHHHHHHHHHHHHHHH
Q 036633 366 TYGRVNEVTGSLFKPS--LLKLLDKLVVIDLAVPLLDTTRLLLREWACEETK 415 (550)
Q Consensus 366 ~~~~~~~~l~~~f~p~--ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~ 415 (550)
. ...|+.+ ...|+ ..|.|+ |....-+.+.+.+.+....
T Consensus 245 q--------~rlf~~d~q~~~ri-~~IsFN---PIa~T~MKK~L~ric~~e~ 284 (634)
T KOG1970|consen 245 Q--------DRLFPKDIQEEPRI-SNISFN---PIAPTIMKKFLKRICRIEA 284 (634)
T ss_pred h--------hhhchhhhhhccCc-ceEeec---CCcHHHHHHHHHHHHHHhc
Confidence 0 1234333 34788 589999 9999988888888776533
No 273
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.88 E-value=1e-05 Score=87.30 Aligned_cols=175 Identities=13% Similarity=0.128 Sum_probs=97.5
Q ss_pred hhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC-
Q 036633 201 QGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG- 278 (550)
Q Consensus 201 ~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s- 278 (550)
-..+--.|+|+..++.+|+-++.....+--|-...-|. -++||+|.|||||+-+.|-.++...+ .++.---+
T Consensus 444 iaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~R------AV~tTGqGA 517 (854)
T KOG0477|consen 444 IASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPR------AVFTTGQGA 517 (854)
T ss_pred HHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcc------eeEeccCCc
Confidence 33455679999999999888876541101111111133 68999999999999999999988765 44332211
Q ss_pred ------CCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC--CeEeec-CCeEEEE
Q 036633 279 ------NYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG--IAAFDL-TNTLIIM 349 (550)
Q Consensus 279 ------~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~--g~~vd~-~~~iiI~ 349 (550)
.+..++.+++-.-.=.+|+--.-.+|-+|||++|++..=...+-..++.. . ++-+ |-...+ ..|.+|+
T Consensus 518 SavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQ--S-ISISKAGIVtsLqArctvIA 594 (854)
T KOG0477|consen 518 SAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQ--S-ISISKAGIVTSLQARCTVIA 594 (854)
T ss_pred cccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhc--c-hhhhhhhHHHHHHhhhhhhe
Confidence 11111111100000011111223479999999999987666777777766 3 3333 322211 3467899
Q ss_pred eCCCChHHHHHhhhhhhHhhHHHHhc-cCCChhhhhhccceeEec
Q 036633 350 TSDLKDEQVYEVMLTATYGRVNEVTG-SLFKPSLLKLLDKLVVID 393 (550)
Q Consensus 350 TsN~g~~~~~~~~~~~~~~~~~~~l~-~~f~p~ll~Rid~ii~f~ 393 (550)
++|.-....+. ...-.+ =.+...+++|+|..++..
T Consensus 595 AanPigGRY~~---------s~tFaqNV~ltePIlSRFDiLcVvk 630 (854)
T KOG0477|consen 595 AANPIGGRYNP---------SLTFAQNVDLTEPILSRFDILCVVK 630 (854)
T ss_pred ecCCCCCccCC---------ccchhhccccccchhhhcceeeeee
Confidence 99972211110 000000 023445999999776665
No 274
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.86 E-value=7.3e-05 Score=68.33 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=30.0
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
.++++||||+|||+++..++..+.. ...+.+.+++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcc
Confidence 3689999999999999999988854 4456777766544
No 275
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.00037 Score=73.33 Aligned_cols=89 Identities=10% Similarity=0.207 Sum_probs=59.9
Q ss_pred CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh----------------HHHHHHHh
Q 036633 236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD----------------SLAALVKK 299 (550)
Q Consensus 236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG----------------~lt~al~~ 299 (550)
++|..++|+||+|+|||+++..||..+.. ....+..+++..|. ..++..|.. .+..++..
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~---~GkkVglI~aDt~R-iaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~ 314 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSR-IGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY 314 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEEecCCcc-hHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHH
Confidence 35678999999999999999999998876 44456666766664 222222221 34444432
Q ss_pred ----CCCCeEEeccccccCH--HHHHHHHHhhhhc
Q 036633 300 ----RPYSVVLFDKIEKANS--SILNLLLKILKTD 328 (550)
Q Consensus 300 ----~p~~VlllDEIeka~~--~v~~~Ll~~ld~g 328 (550)
..+.+||+|-....+. .....|.++++..
T Consensus 315 lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~ 349 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNYRASETVEEMIETMGQV 349 (436)
T ss_pred HHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhc
Confidence 3578999999988874 4456666666543
No 276
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.83 E-value=0.0017 Score=69.97 Aligned_cols=107 Identities=15% Similarity=0.295 Sum_probs=66.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc--cCCCCCCceeEEecCCCCchh-----hhhhHHh----------HHHHHHHh-C
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY--DNNDNDNHLIHFDMGNYTELE-----SIKHFFD----------SLAALVKK-R 300 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~--~~~~~~~~li~id~s~~~~~~-----~~s~liG----------~lt~al~~-~ 300 (550)
.+++|+||+|||||+++..||..+. . ....+..+++..|.... ......| .+...+.. .
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~---~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLY---GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR 298 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC
Confidence 6899999999999999999887764 2 23466667776664211 0111122 34444443 4
Q ss_pred CCCeEEeccccccC--HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633 301 PYSVVLFDKIEKAN--SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY 359 (550)
Q Consensus 301 p~~VlllDEIeka~--~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~ 359 (550)
.+.+||+|-....+ +.....|.++++.. . . --.+++|++++.+...+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~--~-~--------~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFS--G-E--------PIDVYLVLSATTKYEDLK 348 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhcc--C-C--------CCeEEEEEECCCCHHHHH
Confidence 57899999887654 44556666676622 1 0 024567888888765543
No 277
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.82 E-value=0.00021 Score=68.86 Aligned_cols=107 Identities=16% Similarity=0.274 Sum_probs=64.3
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh-----hhhhHHh--------------HHHHHH-
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE-----SIKHFFD--------------SLAALV- 297 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~-----~~s~liG--------------~lt~al- 297 (550)
|.+++|+||+|||||+++--||..+.. ....+.-+.+..|.-.. ...+.+| .+.+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~---~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL---KGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh---ccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 568999999999999988888887765 34444444444454221 1223333 122233
Q ss_pred --HhCCCCeEEeccccccCH--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633 298 --KKRPYSVVLFDKIEKANS--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY 359 (550)
Q Consensus 298 --~~~p~~VlllDEIeka~~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~ 359 (550)
+...+.+||+|=....+. +....|.++++.- . -..+++++.++.+.+.+.
T Consensus 78 ~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~--~----------~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL--N----------PDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH--S----------SSEEEEEEEGGGGGHHHH
T ss_pred HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc--C----------CccceEEEecccChHHHH
Confidence 346678999999988874 3444554444432 1 134568888888766553
No 278
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.80 E-value=7.4e-05 Score=72.08 Aligned_cols=85 Identities=24% Similarity=0.443 Sum_probs=54.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC-CCCchh------------hhhhHHhHHHHHHHhCCCCeE
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG-NYTELE------------SIKHFFDSLAALVKKRPYSVV 305 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s-~~~~~~------------~~s~liG~lt~al~~~p~~Vl 305 (550)
|.++++||||+|||++++++...+... ....++.+.-. ++.... ....+...+..+++..| .++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~p-d~i 78 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDP-DVI 78 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCc-CEE
Confidence 578999999999999999998887531 11122222111 111100 00112225566777777 799
Q ss_pred EeccccccCHHHHHHHHHhhhhc
Q 036633 306 LFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 306 llDEIeka~~~v~~~Ll~~ld~g 328 (550)
++||+- +++....+++....|
T Consensus 79 i~gEir--d~e~~~~~l~~a~~G 99 (198)
T cd01131 79 LVGEMR--DLETIRLALTAAETG 99 (198)
T ss_pred EEcCCC--CHHHHHHHHHHHHcC
Confidence 999995 677777778888777
No 279
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.78 E-value=0.00098 Score=65.64 Aligned_cols=162 Identities=21% Similarity=0.226 Sum_probs=100.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-------------------HHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-------------------SLAALVKK 299 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-------------------~lt~al~~ 299 (550)
+.+.++|+.|+|||.++|++...+.+ +....+.+|-..++.......++- .|.+.+.+
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~---d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNE---DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCC---CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 68899999999999999988877766 554555666655554433322222 34444455
Q ss_pred CCC-CeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccC
Q 036633 300 RPY-SVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSL 377 (550)
Q Consensus 300 ~p~-~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~ 377 (550)
..+ -++++||.+-...++...|..+. +. ..++ +. ++ |++ .|...+.. .++..
T Consensus 129 g~r~v~l~vdEah~L~~~~le~Lrll~-nl----~~~~~~~---l~---ivL---~Gqp~L~~------------~lr~~ 182 (269)
T COG3267 129 GKRPVVLMVDEAHDLNDSALEALRLLT-NL----EEDSSKL---LS---IVL---IGQPKLRP------------RLRLP 182 (269)
T ss_pred CCCCeEEeehhHhhhChhHHHHHHHHH-hh----cccccCc---ee---eee---cCCcccch------------hhchH
Confidence 555 58899999999999988776544 33 2222 22 22 444 33322211 00000
Q ss_pred CChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633 378 FKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN 439 (550)
Q Consensus 378 f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~ 439 (550)
--.+|-.||+.-|... |++.++...-+...|..- +...--++++++.++...
T Consensus 183 ~l~e~~~R~~ir~~l~---P~~~~~t~~yl~~~Le~a-------~~~~~l~~~~a~~~i~~~ 234 (269)
T COG3267 183 VLRELEQRIDIRIELP---PLTEAETGLYLRHRLEGA-------GLPEPLFSDDALLLIHEA 234 (269)
T ss_pred HHHhhhheEEEEEecC---CcChHHHHHHHHHHHhcc-------CCCcccCChhHHHHHHHH
Confidence 0135778995337888 999998888888877542 110234788999888764
No 280
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.77 E-value=0.00078 Score=72.52 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=50.5
Q ss_pred CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH------Hh--------------HHHH
Q 036633 236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF------FD--------------SLAA 295 (550)
Q Consensus 236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l------iG--------------~lt~ 295 (550)
.+|.+++|+||+|+|||++|..||..+.. ......-+++..|... ....+ +| .+.+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~---~g~kV~lV~~D~~R~a-a~eQL~~la~~~gvp~~~~~~~~d~~~i~~~ 168 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK---KGLKVGLVAADTYRPA-AYDQLKQLAEKIGVPFYGDPDNKDAVEIAKE 168 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEecCCCCCHH-HHHHHHHHHHHcCCcEEecCCccCHHHHHHH
Confidence 45689999999999999999999988865 3446666777766532 11111 11 1233
Q ss_pred HHHh-CCCCeEEeccccccCH
Q 036633 296 LVKK-RPYSVVLFDKIEKANS 315 (550)
Q Consensus 296 al~~-~p~~VlllDEIeka~~ 315 (550)
++.. ..+.+|++|.....+.
T Consensus 169 al~~~~~~DvVIIDTAGr~~~ 189 (437)
T PRK00771 169 GLEKFKKADVIIVDTAGRHAL 189 (437)
T ss_pred HHHHhhcCCEEEEECCCcccc
Confidence 3332 3358999999977664
No 281
>PHA02624 large T antigen; Provisional
Probab=97.76 E-value=0.00018 Score=78.95 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=69.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCH---
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANS--- 315 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~--- 315 (550)
..++|+||+|||||+++.+|.+.+.| ..+.+|++.-. ..-.+|-++++ .+++||++-...-
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G------~vlsVNsPt~k----s~FwL~pl~D~------~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGG------KSLNVNCPPDK----LNFELGCAIDQ------FMVVFEDVKGQPADNK 495 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC------eEEEeeCCcch----hHHHhhhhhhc------eEEEeeeccccccccc
Confidence 69999999999999999999999988 55556644321 11223433333 5899999853322
Q ss_pred ----H----HHHHHHHhhhhccccccccC---CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh
Q 036633 316 ----S----ILNLLLKILKTDFNRKATRG---IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK 384 (550)
Q Consensus 316 ----~----v~~~Ll~~ld~g~~~~l~d~---g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~ 384 (550)
. -++-|...||.. +. +.-. ...+...=--.|.|||- ..++.-+.-
T Consensus 496 ~Lp~G~~~dNl~~lRn~LDG~-V~-v~ld~KH~n~~q~~~PPlliT~Ne----------------------y~iP~T~~~ 551 (647)
T PHA02624 496 DLPSGQGMNNLDNLRDYLDGS-VP-VNLEKKHLNKRSQIFPPGIVTMNE----------------------YLIPQTVKA 551 (647)
T ss_pred cCCcccccchhhHHHhhcCCC-Cc-cccchhccCchhccCCCeEEeecC----------------------cccchhHHH
Confidence 1 124455555433 01 1111 01111111235678883 456777888
Q ss_pred hccceeEec
Q 036633 385 LLDKLVVID 393 (550)
Q Consensus 385 Rid~ii~f~ 393 (550)
|+-.++.|.
T Consensus 552 Rf~~~~~F~ 560 (647)
T PHA02624 552 RFAKVLDFK 560 (647)
T ss_pred HHHHhcccc
Confidence 988888888
No 282
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.76 E-value=0.00027 Score=71.38 Aligned_cols=167 Identities=19% Similarity=0.196 Sum_probs=94.6
Q ss_pred ccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh
Q 036633 208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI 286 (550)
Q Consensus 208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~ 286 (550)
++=-++|+..|++..+.- ..| |+.||+|.+|+||+++++..|-...- .++.+.++.- ...
T Consensus 10 lVlf~~ai~hi~ri~RvL----------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~------~~~~i~~~~~---y~~ 70 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVL----------SQPRGHALLVGVGGSGRQSLARLAAFICGY------EVFQIEITKG---YSI 70 (268)
T ss_dssp ----HHHHHHHHHHHHHH----------CSTTEEEEEECTTTSCHHHHHHHHHHHTTE------EEE-TTTSTT---THH
T ss_pred eeeHHHHHHHHHHHHHHH----------cCCCCCeEEecCCCccHHHHHHHHHHHhcc------ceEEEEeeCC---cCH
Confidence 445577888877776654 256 99999999999999999976655433 6666665431 123
Q ss_pred hhHHhHHHHHHH----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633 287 KHFFDSLAALVK----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM 362 (550)
Q Consensus 287 s~liG~lt~al~----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~ 362 (550)
..+...|..++. +....|++|++-+=.++..+..+..+|..| . +.+- ++.. ..+.+....
T Consensus 71 ~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sG--e-ip~L------------F~~e-E~~~i~~~l 134 (268)
T PF12780_consen 71 KDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSG--E-IPNL------------FTKE-ELDNIISSL 134 (268)
T ss_dssp HHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCS--S--TTT------------S-TC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCC--C-CCCC------------ccHH-HHHHHHHHh
Confidence 333222322222 333468888887777778888888888888 5 4431 1110 001111000
Q ss_pred hh------------hhHhhHHHHhcc-------------CC------ChhhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633 363 LT------------ATYGRVNEVTGS-------------LF------KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 363 ~~------------~~~~~~~~~l~~-------------~f------~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l 411 (550)
.+ ..++-..+.+++ .| -|+|++++ .+..|. +.+.+.+..++..+|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~c-tIdW~~---~W~~eaL~~Va~~~l 210 (268)
T PF12780_consen 135 REEAKAEGISDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCC-TIDWFD---PWPEEALLSVANKFL 210 (268)
T ss_dssp HHHHHHCT--SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHS-EEEEEE---S--HHHHHHHHHHHC
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhccc-EEEeCC---cCCHHHHHHHHHHHH
Confidence 00 001111111111 22 37789988 699999 999999999999888
Q ss_pred HH
Q 036633 412 EE 413 (550)
Q Consensus 412 ~~ 413 (550)
..
T Consensus 211 ~~ 212 (268)
T PF12780_consen 211 SD 212 (268)
T ss_dssp CH
T ss_pred Hh
Confidence 54
No 283
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=9.1e-05 Score=67.84 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=54.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCC--------------CceeEEecCCCCch-----hhhhhHHh--------
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDND--------------NHLIHFDMGNYTEL-----ESIKHFFD-------- 291 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~--------------~~li~id~s~~~~~-----~~~s~liG-------- 291 (550)
..+.++||||||||+++.-|++.|...|-.- --|--+|...-... .....-+|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 6789999999999999999999986632000 01111222210000 00001122
Q ss_pred ---HHHHHHHh--CCCCeEEecccccc---CHHHHHHHHHhhhhc
Q 036633 292 ---SLAALVKK--RPYSVVLFDKIEKA---NSSILNLLLKILKTD 328 (550)
Q Consensus 292 ---~lt~al~~--~p~~VlllDEIeka---~~~v~~~Ll~~ld~g 328 (550)
....++++ ..-.|+++|||.++ ++.+...+-++|+.+
T Consensus 86 le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~ 130 (179)
T COG1618 86 LEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSG 130 (179)
T ss_pred HHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCC
Confidence 23344443 12379999999876 678888888888877
No 284
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.72 E-value=9.1e-05 Score=74.72 Aligned_cols=84 Identities=21% Similarity=0.424 Sum_probs=56.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh----hhhh-----HHhHHHHHHHhCCCCeEEec
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE----SIKH-----FFDSLAALVKKRPYSVVLFD 308 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~----~~s~-----liG~lt~al~~~p~~VlllD 308 (550)
+.++|+||+|+|||++.+++...+.. ....++.+ |-.|+.-.+ .+.. +-..+..++|..| .+|+++
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~---~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~P-D~i~vg 156 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNT---PEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDP-DIIMVG 156 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCC---CCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCC-CEEEec
Confidence 78999999999999999999887754 33344444 222222111 0010 1115566777777 899999
Q ss_pred cccccCHHHHHHHHHhhhhc
Q 036633 309 KIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 309 EIeka~~~v~~~Ll~~ld~g 328 (550)
||. +++....+++....|
T Consensus 157 EiR--~~e~a~~~~~aa~tG 174 (264)
T cd01129 157 EIR--DAETAEIAVQAALTG 174 (264)
T ss_pred cCC--CHHHHHHHHHHHHcC
Confidence 997 456677788888888
No 285
>PRK10536 hypothetical protein; Provisional
Probab=97.69 E-value=0.00044 Score=68.83 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=41.4
Q ss_pred HHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHH
Q 036633 180 KLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIA 259 (550)
Q Consensus 180 ~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la 259 (550)
+..++|..++.. ++.-...+.+...+......++... ..+++.||+|||||++|.+++
T Consensus 38 ~~~~~p~~~~~~---------~~~~~~~i~p~n~~Q~~~l~al~~~-------------~lV~i~G~aGTGKT~La~a~a 95 (262)
T PRK10536 38 QMGGVEAIGMAR---------DSRDTSPILARNEAQAHYLKAIESK-------------QLIFATGEAGCGKTWISAAKA 95 (262)
T ss_pred hhccCCccccch---------hhcCCccccCCCHHHHHHHHHHhcC-------------CeEEEECCCCCCHHHHHHHHH
Confidence 567778665432 2233345666666666666666543 388899999999999999999
Q ss_pred HH
Q 036633 260 NE 261 (550)
Q Consensus 260 ~~ 261 (550)
..
T Consensus 96 ~~ 97 (262)
T PRK10536 96 AE 97 (262)
T ss_pred HH
Confidence 85
No 286
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.68 E-value=9.9e-05 Score=77.64 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=63.5
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch-h-hhhhHHh------HHHHHHHhCCCCeEEec
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL-E-SIKHFFD------SLAALVKKRPYSVVLFD 308 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~-~-~~s~liG------~lt~al~~~p~~VlllD 308 (550)
.|..+.++||.|+|||.|.-+....+.. .. -.|+..-+|+.. | ....+.| .+...+.. ...||+||
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~---~~--k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfD 134 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI---KR--KRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFD 134 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCc---cc--cccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEe
Confidence 4489999999999999999999998865 22 233443344321 1 1112222 22333333 33599999
Q ss_pred cccccCHH---HHHHHHHh-hhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 309 KIEKANSS---ILNLLLKI-LKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 309 EIeka~~~---v~~~Ll~~-ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
|++=-++. ++..|+.. ++.| +++|+|||...+.+..
T Consensus 135 EF~V~DiaDAmil~rLf~~l~~~g----------------vvlVaTSN~~P~~Ly~ 174 (362)
T PF03969_consen 135 EFQVTDIADAMILKRLFEALFKRG----------------VVLVATSNRPPEDLYK 174 (362)
T ss_pred eeeccchhHHHHHHHHHHHHHHCC----------------CEEEecCCCChHHHcC
Confidence 99766554 44433333 3333 5699999999888765
No 287
>PRK10867 signal recognition particle protein; Provisional
Probab=97.68 E-value=0.00063 Score=73.12 Aligned_cols=85 Identities=16% Similarity=0.268 Sum_probs=53.6
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEEecCCCCchhh-----hhhHHh-------------HH----
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHFDMGNYTELES-----IKHFFD-------------SL---- 293 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~id~s~~~~~~~-----~s~liG-------------~l---- 293 (550)
.|.+++|+||+|+|||+++.-||..+.. . .....-+++..|..... ...-.| .+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~---~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK---KKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH---hcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 4589999999999999999999988755 3 34566677766653221 001111 11
Q ss_pred HHHHHhCCCCeEEeccccccC--HHHHHHHHHh
Q 036633 294 AALVKKRPYSVVLFDKIEKAN--SSILNLLLKI 324 (550)
Q Consensus 294 t~al~~~p~~VlllDEIeka~--~~v~~~Ll~~ 324 (550)
.+..+...+.+|++|=....+ ......|..+
T Consensus 176 ~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i 208 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAGRLHIDEELMDELKAI 208 (433)
T ss_pred HHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHH
Confidence 122344567899999988775 3444444433
No 288
>PRK14974 cell division protein FtsY; Provisional
Probab=97.65 E-value=0.0016 Score=67.88 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=53.9
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-----hhhHHh--------------HHHHHH
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-----IKHFFD--------------SLAALV 297 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-----~s~liG--------------~lt~al 297 (550)
+|..++|+||||+|||+++..+|..+.. ....+.-+++..|..... ....+| .+..++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~---~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK---NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 5689999999999999999999988755 333444455554532211 111112 112222
Q ss_pred ---HhCCCCeEEeccccccC--HHHHHHHHHhh
Q 036633 298 ---KKRPYSVVLFDKIEKAN--SSILNLLLKIL 325 (550)
Q Consensus 298 ---~~~p~~VlllDEIeka~--~~v~~~Ll~~l 325 (550)
+...+.+|++|.....+ ...++.|-.+.
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~ 248 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIV 248 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHHH
Confidence 33556899999999986 45555555444
No 289
>PRK04296 thymidine kinase; Provisional
Probab=97.64 E-value=0.00035 Score=66.94 Aligned_cols=86 Identities=17% Similarity=0.199 Sum_probs=48.1
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec--C-CCCchhhhhhH-----------HhHHHHHH--HhCCCC
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM--G-NYTELESIKHF-----------FDSLAALV--KKRPYS 303 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~--s-~~~~~~~~s~l-----------iG~lt~al--~~~p~~ 303 (550)
..+++||+|+|||++|..++..+-. .....+.+.- . .+......+++ ...+...+ ....+.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKID 80 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCC
Confidence 6789999999999999888777644 2333333321 1 11111001111 00122222 234568
Q ss_pred eEEeccccccCHHHHHHHHHhh-hhc
Q 036633 304 VVLFDKIEKANSSILNLLLKIL-KTD 328 (550)
Q Consensus 304 VlllDEIeka~~~v~~~Ll~~l-d~g 328 (550)
+|++||++-++.+....|++.+ +.|
T Consensus 81 vviIDEaq~l~~~~v~~l~~~l~~~g 106 (190)
T PRK04296 81 CVLIDEAQFLDKEQVVQLAEVLDDLG 106 (190)
T ss_pred EEEEEccccCCHHHHHHHHHHHHHcC
Confidence 9999999998877444455554 344
No 290
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.0045 Score=65.29 Aligned_cols=111 Identities=14% Similarity=0.230 Sum_probs=60.9
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh-----hhhhHHh----------HHHHHHHh-C
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE-----SIKHFFD----------SLAALVKK-R 300 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~-----~~s~liG----------~lt~al~~-~ 300 (550)
++.+++|+||||||||+++..||..+... .....+..+.+..|.-.. ...+..| .+..++.+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~-~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR-FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 34799999999999999999999865320 011244455555553111 1112223 33333432 4
Q ss_pred CCCeEEeccccccCHH-HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633 301 PYSVVLFDKIEKANSS-ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY 359 (550)
Q Consensus 301 p~~VlllDEIeka~~~-v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~ 359 (550)
.+.+||||.....+.+ .+.-.+..+... . .--.+++|+.++.+.+.+.
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~--~---------~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGA--D---------TPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhcc--C---------CCCeEEEEecCccChHHHH
Confidence 4589999999877532 222333333221 0 0013456777666665543
No 291
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.63 E-value=0.00077 Score=69.44 Aligned_cols=150 Identities=16% Similarity=0.226 Sum_probs=80.6
Q ss_pred hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCc-eeEEecCCC
Q 036633 203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNH-LIHFDMGNY 280 (550)
Q Consensus 203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~-li~id~s~~ 280 (550)
.|.+-+-|..+.+..+.+.+..+ +...... ..++|+|+.|+|||++.+.|...++. .... ...+.+..+
T Consensus 46 ~L~~~~~~d~~~~~~l~~~lg~~------L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~---~~~~~~~~~~~~~~ 116 (304)
T TIGR01613 46 FLLETFGGDNELIEYLQRVIGYS------LTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGD---YATTAVASLKMNEF 116 (304)
T ss_pred HHHHHhCCCHHHHHHHHHHHhHH------hcCCCCceEEEEEECCCCCcHHHHHHHHHHHhCh---hhccCCcchhhhhc
Confidence 34333334444555555555444 2222233 78999999999999999999877654 1111 111222222
Q ss_pred Cc-hhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC---CeEeecC-CeEEEEeCCCCh
Q 036633 281 TE-LESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG---IAAFDLT-NTLIIMTSDLKD 355 (550)
Q Consensus 281 ~~-~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~---g~~vd~~-~~iiI~TsN~g~ 355 (550)
.. ....+.|. ...+++.||+..-...-.+.|-.+.... . ++-. ...+.|+ ++.+|++||--.
T Consensus 117 ~~~~f~~a~l~----------gk~l~~~~E~~~~~~~~~~~lK~lt~gd--~-i~~~~k~k~~~~~~~~~~~i~~tN~~P 183 (304)
T TIGR01613 117 QEHRFGLARLE----------GKRAVIGDEVQKGYRDDESTFKSLTGGD--T-ITARFKNKDPFEFTPKFTLVQSTNHLP 183 (304)
T ss_pred cCCCchhhhhc----------CCEEEEecCCCCCccccHHhhhhhhcCC--e-EEeecccCCcEEEEEeeEEEEEcCCCC
Confidence 11 11122221 2258999999764333335555555433 2 3322 2334443 456888888532
Q ss_pred HHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633 356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID 393 (550)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~ 393 (550)
.. ...+.++..|+ .+|+|.
T Consensus 184 ~~------------------~~~~~a~~RR~-~vi~f~ 202 (304)
T TIGR01613 184 RI------------------RGFDGGIKRRL-RIIPFT 202 (304)
T ss_pred cc------------------CCCChhheeeE-EEEecc
Confidence 10 11246788999 899987
No 292
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.62 E-value=0.00015 Score=76.09 Aligned_cols=85 Identities=25% Similarity=0.467 Sum_probs=55.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe-cCCCCchhh--------hh----hHHhHHHHHHHhCCCCeE
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD-MGNYTELES--------IK----HFFDSLAALVKKRPYSVV 305 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id-~s~~~~~~~--------~s----~liG~lt~al~~~p~~Vl 305 (550)
+.++++||||+|||++.+++...+... ....++.+. -.++...+. +. .+-..+..+++..| .+|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~p-d~i 199 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKN--AAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDP-DVI 199 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCC-CEE
Confidence 799999999999999999999877531 122333331 112111100 00 11114566777788 799
Q ss_pred EeccccccCHHHHHHHHHhhhhc
Q 036633 306 LFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 306 llDEIeka~~~v~~~Ll~~ld~g 328 (550)
++||+- +++.....++....|
T Consensus 200 ~vgEir--d~~~~~~~l~aa~tG 220 (343)
T TIGR01420 200 LIGEMR--DLETVELALTAAETG 220 (343)
T ss_pred EEeCCC--CHHHHHHHHHHHHcC
Confidence 999996 777777778888888
No 293
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.62 E-value=6.9e-05 Score=67.60 Aligned_cols=69 Identities=17% Similarity=0.369 Sum_probs=45.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL 318 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~ 318 (550)
.++|++|.||||||++|..||+.+ .|-.|+||.+...... .+.. ...|...+||| ..++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~--------~~~~i~isd~vkEn~l---~~gy-----DE~y~c~i~DE-----dkv~ 66 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT--------GLEYIEISDLVKENNL---YEGY-----DEEYKCHILDE-----DKVL 66 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh--------CCceEehhhHHhhhcc---hhcc-----cccccCccccH-----HHHH
Confidence 599999999999999999999776 4777888877533221 1111 12345667777 3445
Q ss_pred HHHHHhhhhc
Q 036633 319 NLLLKILKTD 328 (550)
Q Consensus 319 ~~Ll~~ld~g 328 (550)
+.|-..+..|
T Consensus 67 D~Le~~m~~G 76 (176)
T KOG3347|consen 67 DELEPLMIEG 76 (176)
T ss_pred HHHHHHHhcC
Confidence 5555444444
No 294
>PHA01747 putative ATP-dependent protease
Probab=97.61 E-value=0.00012 Score=75.49 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=86.5
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhH-HHHHHHh-CCCCeEEeccccccC-
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS-LAALVKK-RPYSVVLFDKIEKAN- 314 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~-lt~al~~-~p~~VlllDEIeka~- 314 (550)
+-+++=.||.|||||++-+.+...... .. ..+..+++.|+.. -+..+-- .-+.+|.||||....
T Consensus 190 NyNliELgPRGTGKS~~f~eis~fsp~--------~i-----SGG~~TvA~LFyN~~t~~~GLVg~~D~VaFDEVa~i~f 256 (425)
T PHA01747 190 PVHIIELSNRGTGKTTTFVILQELFNF--------RY-----YTEPPTYANLVYDAKTNALGLVFLSNGLIFDEIQTWKD 256 (425)
T ss_pred CeeEEEecCCCCChhhHHHHhhhcCCc--------ee-----eCCCCchHHheEecCCCceeEEeeccEEEEEccccccC
Confidence 378999999999999999999764321 11 1122344455431 0100000 124799999998764
Q ss_pred ---HHHHHHHHHhhhhccccccccC-CeEee----cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc--CC---Chh
Q 036633 315 ---SSILNLLLKILKTDFNRKATRG-IAAFD----LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS--LF---KPS 381 (550)
Q Consensus 315 ---~~v~~~Ll~~ld~g~~~~l~d~-g~~vd----~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~--~f---~p~ 381 (550)
.++.++|...|++| . ++.+ +...+ -.++=+|+..|..+..+.. ...+ +.+...|-+ .| .++
T Consensus 257 ~~~kdiv~IMKdYMesG--~-FsRG~~~~ss~~sI~a~asiVf~GNin~~~l~~-~~~~--~~l~~~Lp~~~~~r~~~sA 330 (425)
T PHA01747 257 SNMRAINSTLSTGMENC--V-WTRGAGTESDAATIVRCIPIIFAGNPDSSTLDT-YQTP--NYIKNYLVSYELFQSLTKA 330 (425)
T ss_pred CCHHHHHHHHHHHhhcc--e-eecCCCCcccchhhccceeEEEecCCCCccccc-cccc--hhHHHhcchhhhhcccchH
Confidence 57999999999999 7 7776 32111 2356688888887533221 1010 112333323 45 689
Q ss_pred hhhhccceeEecCCCCCCHHHH
Q 036633 382 LLKLLDKLVVIDLAVPLLDTTR 403 (550)
Q Consensus 382 ll~Rid~ii~f~~~~pL~~e~i 403 (550)
|+.|| .++.+. .|..+.+++
T Consensus 331 ~LDRI-hi~g~~-~pkIs~d~~ 350 (425)
T PHA01747 331 ILDRI-AIIIVN-EKKITYDDI 350 (425)
T ss_pred Hhhhh-hhcccc-cCcCCHHHh
Confidence 99999 566665 224455544
No 295
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.00023 Score=68.81 Aligned_cols=85 Identities=21% Similarity=0.169 Sum_probs=54.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCC-----ceeEEecCCCCchhh---hhhHHh-------------HHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDN-----HLIHFDMGNYTELES---IKHFFD-------------SLAALV 297 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~-----~li~id~s~~~~~~~---~s~liG-------------~lt~al 297 (550)
.+.|+.||||||||++.+-||+.+.. ..+ ...-+|-+.-..... -..-+| -+..++
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~---g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSD---GINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhc---cccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence 57899999999999999999999866 322 333444221100000 000011 456677
Q ss_pred HhCCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633 298 KKRPYSVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 298 ~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
+.....|+++|||..... ...++.++..|
T Consensus 215 rsm~PEViIvDEIGt~~d--~~A~~ta~~~G 243 (308)
T COG3854 215 RSMSPEVIIVDEIGTEED--ALAILTALHAG 243 (308)
T ss_pred HhcCCcEEEEeccccHHH--HHHHHHHHhcC
Confidence 775558999999985443 34667788888
No 296
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.017 Score=61.62 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=66.5
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHh-ccCCCCCCceeEEecCCCCchhh-----hhhHHh----------HHHHHHHhCC
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANEL-YDNNDNDNHLIHFDMGNYTELES-----IKHFFD----------SLAALVKKRP 301 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l-~~~~~~~~~li~id~s~~~~~~~-----~s~liG----------~lt~al~~~p 301 (550)
|.+++|+||+|||||+++..||..+ .. ......-+++..|..... .....| .+.+.+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~---~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~ 299 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH---MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDG 299 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh---cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCC
Confidence 4689999999999999999999754 22 222455555555443211 001112 3444555567
Q ss_pred CCeEEeccccccC--HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 302 YSVVLFDKIEKAN--SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 302 ~~VlllDEIeka~--~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
+.+|++|=....+ ....+.|..+++.. . - .+...+++|+.++.+...+..
T Consensus 300 ~D~VLIDTaGr~~rd~~~l~eL~~~~~~~--~-~------~~~~e~~LVLsAt~~~~~~~~ 351 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQLERMQSFYSCF--G-E------KDSVENLLVLSSTSSYHHTLT 351 (432)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHHhh--c-C------CCCCeEEEEEeCCCCHHHHHH
Confidence 7899999766554 45556666655421 1 0 011346788888887755543
No 297
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.59 E-value=0.0023 Score=68.78 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=48.6
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhc-cCCCCCCceeEEecCCCCchhh-----hhhHHh-------------H----H
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELY-DNNDNDNHLIHFDMGNYTELES-----IKHFFD-------------S----L 293 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~-~~~~~~~~li~id~s~~~~~~~-----~s~liG-------------~----l 293 (550)
+|.+++|+||+|+|||++|.-||..+. . ...+..-++|..|..... ...-+| . .
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~---~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKK---QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh---CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence 468999999999999999999998864 3 234566677776653211 011111 1 1
Q ss_pred HHHHHhCCCCeEEeccccccC
Q 036633 294 AALVKKRPYSVVLFDKIEKAN 314 (550)
Q Consensus 294 t~al~~~p~~VlllDEIeka~ 314 (550)
.+......+.+|++|=....+
T Consensus 175 l~~~~~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTAGRLQ 195 (428)
T ss_pred HHHHHhcCCCEEEEeCCCccc
Confidence 122334567899999887765
No 298
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.58 E-value=0.0047 Score=65.81 Aligned_cols=136 Identities=14% Similarity=0.135 Sum_probs=83.5
Q ss_pred HHHHHHhCCC--CeEEecccccc---CH-----HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH-h
Q 036633 293 LAALVKKRPY--SVVLFDKIEKA---NS-----SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE-V 361 (550)
Q Consensus 293 lt~al~~~p~--~VlllDEIeka---~~-----~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~-~ 361 (550)
|...++...| =+|+|||++.+ +. ..++.|++++++- - . | .+.+.-|++|..... ..+ .
T Consensus 229 L~~~lr~aGy~GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~--~--~--G---~~~gL~~~~~gTPef--~eD~r 297 (416)
T PF10923_consen 229 LARFLRDAGYKGLLILLDELENLYKLRNDQAREKNYEALRQLIDDI--D--Q--G---RAPGLYFVFAGTPEF--FEDGR 297 (416)
T ss_pred HHHHHHHcCCCceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHH--h--c--C---CCCceEEEEeeCHHH--hhCcc
Confidence 3344444333 38999999843 33 4588889998753 1 0 1 246677888755321 100 0
Q ss_pred hhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633 362 MLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN 439 (550)
Q Consensus 362 ~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~ 439 (550)
.+-.+|..+...+...| .+.|.+...-+|.+. ||+.+++..++.+...=.... .+. .-.++++.+..++..
T Consensus 298 rGv~sY~AL~~RL~~~~~~~~~~~n~~~pvIrL~---~l~~eel~~l~~klr~i~a~~---~~~-~~~v~d~~l~~~~~~ 370 (416)
T PF10923_consen 298 RGVYSYEALAQRLAEEFFADDGFDNLRAPVIRLQ---PLTPEELLELLEKLRDIYAEA---YGY-ESRVDDEELKAFAQH 370 (416)
T ss_pred ccccccHHHHHHHhccccccccccCccCceecCC---CCCHHHHHHHHHHHHHHHHhh---CCC-CCCCCHHHHHHHHHH
Confidence 00123556666666554 466666666688888 999999997776654433332 344 557899999999987
Q ss_pred CcccCCC
Q 036633 440 AARKYGQ 446 (550)
Q Consensus 440 ~~~~~Ga 446 (550)
++.+.|+
T Consensus 371 ~~~r~G~ 377 (416)
T PF10923_consen 371 VAGRLGG 377 (416)
T ss_pred HHhccCc
Confidence 7755554
No 299
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.58 E-value=0.00023 Score=76.33 Aligned_cols=87 Identities=23% Similarity=0.381 Sum_probs=62.2
Q ss_pred CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh----hhhhHHh-----HHHHHHHhCCCCeE
Q 036633 237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE----SIKHFFD-----SLAALVKKRPYSVV 305 (550)
Q Consensus 237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~----~~s~liG-----~lt~al~~~p~~Vl 305 (550)
+| |-+|++||+|+|||++..++-..++. ...+++.+ |--||.-+. .+..-+| .|-..+|+-| .||
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~---~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDP-DvI 331 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNT---PERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDP-DVI 331 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcC---CCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCC-CeE
Confidence 67 99999999999999999999888887 55555554 222222111 1222234 4444566677 899
Q ss_pred EeccccccCHHHHHHHHHhhhhcccc
Q 036633 306 LFDKIEKANSSILNLLLKILKTDFNR 331 (550)
Q Consensus 306 llDEIeka~~~v~~~Ll~~ld~g~~~ 331 (550)
++.||. +.+...+..+.--.| +
T Consensus 332 mVGEIR--D~ETAeiavqAalTG--H 353 (500)
T COG2804 332 MVGEIR--DLETAEIAVQAALTG--H 353 (500)
T ss_pred EEeccC--CHHHHHHHHHHHhcC--C
Confidence 999998 677788888888899 7
No 300
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.56 E-value=7.1e-05 Score=65.67 Aligned_cols=25 Identities=40% Similarity=0.582 Sum_probs=22.5
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
++++.||||+|||++|+.||+.+.-
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4789999999999999999998843
No 301
>PRK08118 topology modulation protein; Reviewed
Probab=97.55 E-value=0.00047 Score=64.63 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=27.2
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
.++++||||+|||++|+.|++.+.- +++.+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~------~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI------PVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC------Cceecc
Confidence 4789999999999999999999876 677666
No 302
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.55 E-value=0.00024 Score=68.47 Aligned_cols=85 Identities=21% Similarity=0.308 Sum_probs=52.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh----HHHHHHH------------hCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD----SLAALVK------------KRPY 302 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG----~lt~al~------------~~p~ 302 (550)
...++.||||||||++.+.+.+.+.. ....++-+-.+.-.-. ....-.| .+...+. ..++
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~---~g~~v~~~apT~~Aa~-~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~ 94 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEA---AGKRVIGLAPTNKAAK-ELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKK 94 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHH---TT--EEEEESSHHHHH-HHHHHHTS-EEEHHHHTTEECCEECCSSCC-TST
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHh---CCCeEEEECCcHHHHH-HHHHhhCcchhhHHHHHhcCCcccccccccCCcc
Confidence 47888999999999999999998876 4445554443221100 0011111 1111111 1335
Q ss_pred CeEEeccccccCHHHHHHHHHhhhh
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKT 327 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~ 327 (550)
.||++||+..++...+..|+..+..
T Consensus 95 ~vliVDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 95 DVLIVDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp SEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred cEEEEecccccCHHHHHHHHHHHHh
Confidence 7999999999999999999988876
No 303
>PRK07261 topology modulation protein; Provisional
Probab=97.55 E-value=0.00058 Score=64.26 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=25.7
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
.++++||||+|||++|+.|++.+.. +.+.+|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~------~~i~~D 32 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC------PVLHLD 32 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC------CeEecC
Confidence 4789999999999999999988755 555555
No 304
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00023 Score=68.40 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
-++.++||||+|||++.|+|...
T Consensus 29 evv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 68999999999999999999854
No 305
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.54 E-value=0.00014 Score=68.39 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.7
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
.++++|+||+|||++.+.+.+.+.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh
Confidence 479999999999999999998883
No 306
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.54 E-value=0.0023 Score=77.62 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=39.2
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..++|.+..++.+...+... .+....+.++||+|+|||++|++++..+..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~---------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLE---------SEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ccccchHHHHHHHHHHHccc---------cCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 45899999998887766432 122378899999999999999999887654
No 307
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.53 E-value=0.0001 Score=69.37 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=42.6
Q ss_pred cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
+++|.++.++.+...+... ....|.+++++||+|+|||++.+.+...+.. ...-++.++|....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~---~~~~~~~~~~~~~~ 64 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAE---RGGYVISINCDDSE 64 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT--------SS-----EEE-B-TTSSHHHHHHHHHHHHHH---HT--EEEEEEETTT
T ss_pred CCCCHHHHHHHHHHHHHHH--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCEEEEEEEeccc
Confidence 4789999999999888622 2224479999999999999999999888876 32238888888774
No 308
>PRK13695 putative NTPase; Provisional
Probab=97.52 E-value=0.00055 Score=64.42 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=21.0
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
.++|+|++|+|||++++.++..+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999887763
No 309
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.52 E-value=0.00014 Score=88.22 Aligned_cols=79 Identities=19% Similarity=0.389 Sum_probs=65.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh---------------HHHHHHHhCCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD---------------SLAALVKKRPYS 303 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG---------------~lt~al~~~p~~ 303 (550)
.++||-||+|+|||.+++-+|+.+.. ++++|+--+-++ ...++| .|.+|+++ +.
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~------~~vrinnhehtd---~qeyig~y~~~~~g~l~freg~LV~Alr~--G~ 509 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGK------NIVRINNHEHTD---LQEYIGTYVADDNGDLVFREGVLVQALRN--GD 509 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhcc------Cceehhccccch---HHHHHHhhhcCCCCCeeeehhHHHHHHHh--CC
Confidence 48999999999999999999999877 889988655543 233344 66677665 45
Q ss_pred eEEeccccccCHHHHHHHHHhhhhc
Q 036633 304 VVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 304 VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
.++|||+.-++.+++.+|.+++++.
T Consensus 510 ~~vlD~lnla~~dvL~aLnrllddn 534 (1856)
T KOG1808|consen 510 WIVLDELNLAPHDVLEALNRLLDDN 534 (1856)
T ss_pred EEEeccccccchHHHHHHHhhhhhh
Confidence 8999999999999999999999984
No 310
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.50 E-value=0.00044 Score=70.47 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=60.6
Q ss_pred HHHhhhhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcC
Q 036633 157 ARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRR 236 (550)
Q Consensus 157 ~~~~~~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~ 236 (550)
+++..+.+....++.++|.+++- |.+.+ .++ .+........+.+.+... ...+
T Consensus 8 ~~~~~~~~~~~~~~~~~v~~iy~-----pl~~~--------~~~-------~~~~~~~~~~~~~~f~~~-------~~~~ 60 (290)
T TIGR00554 8 DEIKRLKGINEDLSLEEVATIYL-----PLSRL--------LNF-------YISSNLRRQAVLEQFLGT-------NGAK 60 (290)
T ss_pred HHHHHhhCCCCCcCHHHHHHHHH-----HHHHH--------HHH-------HHHHhhhHHHHHHHHHhc-------ccCC
Confidence 45666777778899999999886 54432 121 122222333333333222 2344
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE 282 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~ 282 (550)
+|..+.++||+|+|||++|+.|...+.... .......+.|..|..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~-~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWP-EHRKVELITTDGFLH 105 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcC-CCCceEEEecccccc
Confidence 678999999999999999999998885200 233455666666643
No 311
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.49 E-value=0.0039 Score=63.17 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=48.4
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh--h---hhHHh--------------HHHH--
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES--I---KHFFD--------------SLAA-- 295 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~--~---s~liG--------------~lt~-- 295 (550)
+|.+++|+||+|+|||+++.-||..+.. ......-+++..|..... . ....| ...+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~---~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKK---QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 3488999999999999999999988755 334566666665533211 0 01111 0111
Q ss_pred -HHHhCCCCeEEeccccccCH
Q 036633 296 -LVKKRPYSVVLFDKIEKANS 315 (550)
Q Consensus 296 -al~~~p~~VlllDEIeka~~ 315 (550)
......+.+|++|=....+.
T Consensus 148 ~~~~~~~~D~ViIDT~G~~~~ 168 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRLQN 168 (272)
T ss_pred HHHHHCCCCEEEEeCCCCCcc
Confidence 22346678999998887764
No 312
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.48 E-value=0.0062 Score=63.11 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=32.8
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
+|.+++|+||+|+|||+++..||..+.. ....+.-+++..|.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~---~g~~V~Li~~D~~r 154 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA---QGKKVLLAAGDTFR 154 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh---cCCeEEEEecCccc
Confidence 4589999999999999999999998865 44456666665553
No 313
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.46 E-value=0.00041 Score=73.34 Aligned_cols=121 Identities=22% Similarity=0.326 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC-----CCchhh
Q 036633 211 QNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN-----YTELES 285 (550)
Q Consensus 211 Q~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~-----~~~~~~ 285 (550)
|..+.+.|.+++... .|..+.+.||.|||||++.++|...+.. ....++..-.+. +....+
T Consensus 6 Q~~~~~~v~~~~~~~-----------~~~~~fv~G~~GtGKs~l~~~i~~~~~~---~~~~~~~~a~tg~AA~~i~~G~T 71 (364)
T PF05970_consen 6 QRRVFDTVIEAIENE-----------EGLNFFVTGPAGTGKSFLIKAIIDYLRS---RGKKVLVTAPTGIAAFNIPGGRT 71 (364)
T ss_pred HHHHHHHHHHHHHcc-----------CCcEEEEEcCCCCChhHHHHHHHHHhcc---ccceEEEecchHHHHHhccCCcc
Confidence 777888887777644 5679999999999999999999998755 322332221111 101112
Q ss_pred hhhHHh---------H--------HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEE
Q 036633 286 IKHFFD---------S--------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLI 347 (550)
Q Consensus 286 ~s~liG---------~--------lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~ii 347 (550)
+..++| . +.+.+ +.-.+|++|||--++..++..+-+.|..= + .+ .....|....+
T Consensus 72 ~hs~f~i~~~~~~~~~~~~~~~~~~~~~l--~~~~~lIiDEism~~~~~l~~i~~~lr~i--~---~~~~~~~pFGG~~v 144 (364)
T PF05970_consen 72 IHSFFGIPINNNEKSQCKISKNSRLRERL--RKADVLIIDEISMVSADMLDAIDRRLRDI--R---KSKDSDKPFGGKQV 144 (364)
T ss_pred hHHhcCccccccccccccccccchhhhhh--hhheeeecccccchhHHHHHHHHHhhhhh--h---cccchhhhcCcceE
Confidence 222233 0 01111 22359999999999999988877666432 2 11 01345666667
Q ss_pred EEeCC
Q 036633 348 IMTSD 352 (550)
Q Consensus 348 I~TsN 352 (550)
|+...
T Consensus 145 il~GD 149 (364)
T PF05970_consen 145 ILFGD 149 (364)
T ss_pred Eeehh
Confidence 77543
No 314
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.45 E-value=0.00014 Score=71.10 Aligned_cols=72 Identities=17% Similarity=0.329 Sum_probs=42.5
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC-------------CCchhhhhhHHhHHHHHHH--hCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN-------------YTELESIKHFFDSLAALVK--KRP 301 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~-------------~~~~~~~s~liG~lt~al~--~~p 301 (550)
.|..+||+|+||+|||++|+.++... .++..|++. +....+...+...+ ..+. ..+
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~~--------~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l-~~~~~~~~~ 81 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGKT--------LVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFY-VMQNIQAVK 81 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCCC--------EEEeccccchhccCCCCCceeecCCCCCHHHHHHHH-HHHHhcccc
Confidence 45679999999999999999987311 223333321 10111122222222 2333 356
Q ss_pred CCeEEeccccccCHHH
Q 036633 302 YSVVLFDKIEKANSSI 317 (550)
Q Consensus 302 ~~VlllDEIeka~~~v 317 (550)
|.+|+||+|+.+-..+
T Consensus 82 ydtVVIDsI~~l~~~~ 97 (220)
T TIGR01618 82 YDNIVIDNISALQNLW 97 (220)
T ss_pred CCEEEEecHHHHHHHH
Confidence 8999999999864433
No 315
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.014 Score=63.81 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=47.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-----hhhHHh----------HHHHHHHh-CCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-----IKHFFD----------SLAALVKK-RPY 302 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-----~s~liG----------~lt~al~~-~p~ 302 (550)
.++.|+||+|+|||+++..|+..+...+ ....+..+++..|..... ....+| .+...+++ ..+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~-~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQH-APRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 7999999999999999999887653310 112455555544432111 011112 34444443 357
Q ss_pred CeEEeccccccCHH
Q 036633 303 SVVLFDKIEKANSS 316 (550)
Q Consensus 303 ~VlllDEIeka~~~ 316 (550)
.+||+|.....+.+
T Consensus 430 DLVLIDTaG~s~~D 443 (559)
T PRK12727 430 KLVLIDTAGMGQRD 443 (559)
T ss_pred CEEEecCCCcchhh
Confidence 89999999876544
No 316
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.43 E-value=0.0008 Score=63.55 Aligned_cols=84 Identities=19% Similarity=0.274 Sum_probs=53.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC-------------CCc------hhhhh-----hHH-h--
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN-------------YTE------LESIK-----HFF-D-- 291 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~-------------~~~------~~~~s-----~li-G-- 291 (550)
..+.+.||+|+|||+++++|+..+.. .... +.+|-.. |.. ..++. .|- |
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP---QQGE-ITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC---CCCE-EEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 58899999999999999999987654 2222 1222110 000 00111 111 1
Q ss_pred ---HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633 292 ---SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKT 327 (550)
Q Consensus 292 ---~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~ 327 (550)
.+..++-..| .++++||.- .+++.....+++.+.+
T Consensus 105 qrv~laral~~~p-~~lllDEP~~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 105 QRLALARILLQDA-PIVLLDEPTVGLDPITERQLLSLIFE 143 (178)
T ss_pred HHHHHHHHHhcCC-CEEEEECCcccCCHHHHHHHHHHHHH
Confidence 5666777777 799999985 5677878888888754
No 317
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.42 E-value=0.0076 Score=65.57 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=47.1
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh-----hhhhHHh----------HHH-HHHHhC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE-----SIKHFFD----------SLA-ALVKKR 300 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~-----~~s~liG----------~lt-~al~~~ 300 (550)
++.+++|+||+|+|||+++..||..+.... ....+.-+++..|.-.. ....+.| .+. ....-.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRH-GASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhc-CCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc
Confidence 347999999999999999999998763200 12244455555542111 1122333 111 122224
Q ss_pred CCCeEEeccccccCHH
Q 036633 301 PYSVVLFDKIEKANSS 316 (550)
Q Consensus 301 p~~VlllDEIeka~~~ 316 (550)
.+.++++|.....+.+
T Consensus 334 d~d~VLIDTaGr~~~d 349 (484)
T PRK06995 334 NKHIVLIDTIGMSQRD 349 (484)
T ss_pred CCCeEEeCCCCcChhh
Confidence 5579999998877654
No 318
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.40 E-value=0.00043 Score=73.54 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=78.0
Q ss_pred HHHHhhhhcCcccCcHHHHHHHHHHHhcchhhh--cCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633 197 YMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAK--KGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI 273 (550)
Q Consensus 197 l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~--~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li 273 (550)
...|...+.-.|+|++++++.+.-.+.-.-... -|+. -+. -++||.|.|||-|+-|.+.|.+...+ ..
T Consensus 333 yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMK--IRGdINicLmGDPGVAKSQLLkyi~rlapR------gv- 403 (721)
T KOG0482|consen 333 YEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMK--IRGDINICLMGDPGVAKSQLLKYISRLAPR------GV- 403 (721)
T ss_pred HHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCce--eecceeEEecCCCchhHHHHHHHHHhcCcc------cc-
Confidence 567778888999999999998877665431000 1111 123 68999999999999999999987655 11
Q ss_pred EEecCCCCchhhhhhHHhHHHHHHHhCC----------------CCeEEeccccccCHHHHHHHHHhhhhc
Q 036633 274 HFDMGNYTELESIKHFFDSLAALVKKRP----------------YSVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 274 ~id~s~~~~~~~~s~liG~lt~al~~~p----------------~~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
|+..-- |.-+ -||.++-+-| .+|-.|||+||+...=...+-.+++..
T Consensus 404 ------YTTGrG-SSGV-GLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQ 466 (721)
T KOG0482|consen 404 ------YTTGRG-SSGV-GLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQ 466 (721)
T ss_pred ------eecCCC-CCcc-ccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhh
Confidence 111000 0001 2344444333 468899999999998888999999988
No 319
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.40 E-value=0.00037 Score=76.30 Aligned_cols=87 Identities=18% Similarity=0.350 Sum_probs=58.8
Q ss_pred CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh----hhhhHHh-----HHHHHHHhCCCCeE
Q 036633 237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE----SIKHFFD-----SLAALVKKRPYSVV 305 (550)
Q Consensus 237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~----~~s~liG-----~lt~al~~~p~~Vl 305 (550)
+| +.++++||||+|||++..++-..+.. ....++.+ |--||.-.+ .+..-+| .+..++|..| .||
T Consensus 240 ~~~GlilitGptGSGKTTtL~a~L~~l~~---~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dP-DvI 315 (486)
T TIGR02533 240 RPHGIILVTGPTGSGKTTTLYAALSRLNT---PERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDP-DII 315 (486)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHhccCC---CCCcEEEEcCCeeeecCCCceEEEccccCccHHHHHHHHHhcCC-CEE
Confidence 45 78999999999999999987776654 33445554 212222111 1111112 5667788888 899
Q ss_pred EeccccccCHHHHHHHHHhhhhcccc
Q 036633 306 LFDKIEKANSSILNLLLKILKTDFNR 331 (550)
Q Consensus 306 llDEIeka~~~v~~~Ll~~ld~g~~~ 331 (550)
++.||- +++.....++....| +
T Consensus 316 ~vGEiR--d~eta~~a~~aa~tG--H 337 (486)
T TIGR02533 316 MVGEIR--DLETAQIAIQASLTG--H 337 (486)
T ss_pred EEeCCC--CHHHHHHHHHHHHhC--C
Confidence 999997 566777888888899 7
No 320
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.39 E-value=0.00085 Score=68.38 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=31.8
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
+|.+++|+||+|||||+++..||..+.... ....+..+++..|.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~-g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEH-GNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHc-CCCeEEEEECCccc
Confidence 447999999999999999999998774300 12356666666654
No 321
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.0014 Score=61.59 Aligned_cols=84 Identities=19% Similarity=0.324 Sum_probs=53.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC----------------ch----hhhhh--HH-h----
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT----------------EL----ESIKH--FF-D---- 291 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~----------------~~----~~~s~--li-G---- 291 (550)
..+.+.||+|+|||++.++|+..+.. .... +.++-.... +. .++.. |- |
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~-i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDP---TSGE-ILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC---CCCE-EEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 68899999999999999999988654 2222 122211000 00 01100 11 2
Q ss_pred -HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633 292 -SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKT 327 (550)
Q Consensus 292 -~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~ 327 (550)
.+..++-..| .++++||-- -+++.....|.+++..
T Consensus 105 l~la~al~~~p-~llllDEP~~gLD~~~~~~l~~~l~~ 141 (171)
T cd03228 105 IAIARALLRDP-PILILDEATSALDPETEALILEALRA 141 (171)
T ss_pred HHHHHHHhcCC-CEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 5566676777 799999975 5677777777777753
No 322
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.016 Score=61.00 Aligned_cols=84 Identities=12% Similarity=0.195 Sum_probs=53.7
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH------Hh----------HHHHHHHh--
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF------FD----------SLAALVKK-- 299 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l------iG----------~lt~al~~-- 299 (550)
+.+++|+||+|||||+++..||..+.. ...+...+++..|... ++..| .| .+..++..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~---~g~~V~lItaDtyR~g-AveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLK---QNRTVGFITTDTFRSG-AVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCccCcc-HHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 479999999999999999999987755 3345666776666432 11111 11 44444432
Q ss_pred --CCCCeEEeccccccCH--HHHHHHHHhh
Q 036633 300 --RPYSVVLFDKIEKANS--SILNLLLKIL 325 (550)
Q Consensus 300 --~p~~VlllDEIeka~~--~v~~~Ll~~l 325 (550)
..+.+||+|=....+. +..+.|-.+.
T Consensus 282 ~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 282 YVNCVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred hcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 3468999999888653 3444444443
No 323
>PRK10436 hypothetical protein; Provisional
Probab=97.37 E-value=0.00049 Score=74.64 Aligned_cols=87 Identities=23% Similarity=0.312 Sum_probs=58.3
Q ss_pred CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh----hhhhHHh-----HHHHHHHhCCCCeE
Q 036633 237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE----SIKHFFD-----SLAALVKKRPYSVV 305 (550)
Q Consensus 237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~----~~s~liG-----~lt~al~~~p~~Vl 305 (550)
+| |.+|++||+|+|||++..++-+.+.. ...+++.+ |--||.-.+ .+..-.| .+..++|..| .||
T Consensus 216 ~~~GliLvtGpTGSGKTTtL~a~l~~~~~---~~~~i~TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dP-DvI 291 (462)
T PRK10436 216 QPQGLILVTGPTGSGKTVTLYSALQTLNT---AQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDP-DVI 291 (462)
T ss_pred hcCCeEEEECCCCCChHHHHHHHHHhhCC---CCCEEEEecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCC-CEE
Confidence 45 89999999999999988877777655 33445443 222332111 0111111 5566777788 899
Q ss_pred EeccccccCHHHHHHHHHhhhhcccc
Q 036633 306 LFDKIEKANSSILNLLLKILKTDFNR 331 (550)
Q Consensus 306 llDEIeka~~~v~~~Ll~~ld~g~~~ 331 (550)
++.||- +++.....++....| +
T Consensus 292 ~vGEIR--D~eta~~al~AA~TG--H 313 (462)
T PRK10436 292 MVGEIR--DGETAEIAIKAAQTG--H 313 (462)
T ss_pred EECCCC--CHHHHHHHHHHHHcC--C
Confidence 999997 566777778888889 7
No 324
>PRK06696 uridine kinase; Validated
Probab=97.37 E-value=0.00038 Score=68.39 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633 212 NDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE 282 (550)
Q Consensus 212 ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~ 282 (550)
...++.|+..+... .+.+|..+.+.|+||+|||++|+.|++.+.. ...+.+.+.|..|-.
T Consensus 4 ~~~~~~la~~~~~~--------~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~---~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 4 KQLIKELAEHILTL--------NLTRPLRVAIDGITASGKTTFADELAEEIKK---RGRPVIRASIDDFHN 63 (223)
T ss_pred HHHHHHHHHHHHHh--------CCCCceEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEeccccccC
Confidence 34556666666643 1335689999999999999999999999964 334778888888754
No 325
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.0012 Score=61.32 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.9
Q ss_pred eEEEeccCCCcHHHHHHHHHHHh
Q 036633 240 LFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
.++++|.||||||++++.|+ .+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh
Confidence 47899999999999999999 54
No 326
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.0017 Score=63.97 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
-.+.+.||||||||||-+.||-....
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 57789999999999999999987754
No 327
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.34 E-value=0.00063 Score=71.58 Aligned_cols=88 Identities=20% Similarity=0.420 Sum_probs=56.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE------EecCCCCch------hhh----hhHHhHHHHHHHhCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH------FDMGNYTEL------ESI----KHFFDSLAALVKKRPY 302 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~------id~s~~~~~------~~~----s~liG~lt~al~~~p~ 302 (550)
+.++++||+|+|||++.+++.+.+.........++. +....+... ..+ ..+-..+..++|..|
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~P- 213 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKP- 213 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCC-
Confidence 799999999999999999999887320001112222 222111100 001 011115566888888
Q ss_pred CeEEeccccccCHHHHHHHHHhhhhcccc
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKTDFNR 331 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~ 331 (550)
.++++.|+. +++.....++....| .
T Consensus 214 d~i~vGEiR--d~et~~~al~aa~tG--h 238 (358)
T TIGR02524 214 HAILVGEAR--DAETISAALEAALTG--H 238 (358)
T ss_pred CEEeeeeeC--CHHHHHHHHHHHHcC--C
Confidence 699999987 778888889999999 7
No 328
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.34 E-value=0.00054 Score=72.88 Aligned_cols=184 Identities=15% Similarity=0.112 Sum_probs=101.2
Q ss_pred HHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCc--CCC-eeEEEeccCCCcHHHHHHHHHHHhcc------CCCCC
Q 036633 199 RVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSR--RQL-GLFLFAGPNCSGKAELAKAIANELYD------NNDND 269 (550)
Q Consensus 199 ~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~--~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~------~~~~~ 269 (550)
.+...+.-.|+|..+.+++++=.+--. +|.-+.+. .+. -++||.|.|||.|+-+.+.+-+...- +|.+.
T Consensus 324 ~is~sIAPSIfG~~DiKkAiaClLFgG--srK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSA 401 (729)
T KOG0481|consen 324 RISKSIAPSIFGHEDIKKAIACLLFGG--SRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSA 401 (729)
T ss_pred HHhhccCchhcCchhHHHHHHHHhhcC--ccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCccc
Confidence 334556677999999998876544322 12223222 133 68999999999999999998776522 11000
Q ss_pred CceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC--CeE-eecCCeE
Q 036633 270 NHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG--IAA-FDLTNTL 346 (550)
Q Consensus 270 ~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~--g~~-vd~~~~i 346 (550)
.-+ ..|-..++. ++-|-.--+|.--..++||.+||+||+.++=.-++-+.++.. + +.-. |-+ +=-++|-
T Consensus 402 AGL---TASV~RD~~--tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQ--T-ISIAKAGITT~LNSRtS 473 (729)
T KOG0481|consen 402 AGL---TASVIRDPS--TREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQ--T-ISIAKAGITTTLNSRTS 473 (729)
T ss_pred ccc---eeeEEecCC--cceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhh--h-HHHhhhcceeeecchhh
Confidence 000 000000000 000000000111124589999999999998888888888877 4 4333 432 2234455
Q ss_pred EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHH
Q 036633 347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTR 403 (550)
Q Consensus 347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i 403 (550)
+++++|.-....-+.. + ..-.=-|.|-+++|||.|+..+ .-..++.
T Consensus 474 VLAAANpvfGRyDd~K---t-----~~dNIDf~~TILSRFDmIFIVK---D~h~~~~ 519 (729)
T KOG0481|consen 474 VLAAANPVFGRYDDTK---T-----GEDNIDFMPTILSRFDMIFIVK---DEHDEER 519 (729)
T ss_pred hhhhcCCccccccccC---C-----cccccchhhhHhhhccEEEEEe---ccCcchh
Confidence 6666665322211100 0 0001248899999999999888 6555433
No 329
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.34 E-value=0.0013 Score=66.59 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=24.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.+++++||||+|||++.+.++..+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 58999999999999999999998865
No 330
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.31 E-value=0.001 Score=68.80 Aligned_cols=106 Identities=9% Similarity=0.079 Sum_probs=62.0
Q ss_pred HHhhhhcCCCccCHHHHHHHHHHHhCCCCCCCCCch---HHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC
Q 036633 158 RVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKP---EERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS 234 (550)
Q Consensus 158 ~~~~~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~---~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~ 234 (550)
.+.+.+......+.+ ...-+++..|+|+..+.... ...+..+...+.+-=-.+...+..+..++... ...
T Consensus 57 ~i~~~E~g~~~ps~~-~l~~ia~~l~v~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~~------~~~ 129 (309)
T PRK08154 57 YLAQLESGQGNVSIL-LLRRVARALGCSLADLLGDVDTSSPDWLLIRELLEQASPAQLARVRDALSGMLGA------GRR 129 (309)
T ss_pred HHHHHHCCCCCCCHH-HHHHHHHHhCCCHHHHhCCCCCCChHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh------hhh
Confidence 344444444334433 34455667777766544322 12233344444443334455555555555444 122
Q ss_pred cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 235 RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
++.+..+.|+|++|+|||++++.||+.+.. +|+.+|
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~------~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGV------PFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCC------CEEeHH
Confidence 333389999999999999999999999877 777544
No 331
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.31 E-value=0.00052 Score=76.66 Aligned_cols=87 Identities=17% Similarity=0.292 Sum_probs=59.8
Q ss_pred CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh----hhhhHHh-----HHHHHHHhCCCCeE
Q 036633 237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE----SIKHFFD-----SLAALVKKRPYSVV 305 (550)
Q Consensus 237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~----~~s~liG-----~lt~al~~~p~~Vl 305 (550)
+| |.++|+||||+|||++..++-+.+.. ...+++.+ |--||.-++ .+..-.| .+..++|..| .||
T Consensus 314 ~~~Glilv~G~tGSGKTTtl~a~l~~~~~---~~~~i~tiEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~LR~dP-DvI 389 (564)
T TIGR02538 314 KPQGMVLVTGPTGSGKTVSLYTALNILNT---EEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDP-DII 389 (564)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHhhCC---CCceEEEecCCceecCCCceEEEeccccCCCHHHHHHHHhccCC-CEE
Confidence 45 89999999999999998887777755 34445443 111222111 0111112 5566778888 799
Q ss_pred EeccccccCHHHHHHHHHhhhhcccc
Q 036633 306 LFDKIEKANSSILNLLLKILKTDFNR 331 (550)
Q Consensus 306 llDEIeka~~~v~~~Ll~~ld~g~~~ 331 (550)
++.||- +++.....++....| +
T Consensus 390 ~vGEiR--d~eta~~a~~aa~tG--H 411 (564)
T TIGR02538 390 MVGEIR--DLETAEIAIKAAQTG--H 411 (564)
T ss_pred EeCCCC--CHHHHHHHHHHHHcC--C
Confidence 999998 778888888899899 7
No 332
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.30 E-value=0.00097 Score=63.01 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=27.9
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
+++++||||+|||++|+.||+.+ .+..++++++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~--------~~~~is~~d~l 34 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF--------GFTHLSAGDLL 34 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc--------CCeEEECChHH
Confidence 37899999999999999999987 45677776543
No 333
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.29 E-value=0.0013 Score=61.31 Aligned_cols=84 Identities=14% Similarity=0.255 Sum_probs=54.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc---hhhhhh-------HH-h-----HHHHHHHhCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE---LESIKH-------FF-D-----SLAALVKKRPY 302 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~---~~~~s~-------li-G-----~lt~al~~~p~ 302 (550)
-.+.+.||+|+|||++.++|+..+.. .... +.++-..... ...... |- | .+..++-..|
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~-v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p- 101 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKP---DSGE-ILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNA- 101 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC---CCeE-EEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCC-
Confidence 68899999999999999999987654 2222 3333222111 000111 11 1 5667777777
Q ss_pred CeEEecccc-ccCHHHHHHHHHhhhh
Q 036633 303 SVVLFDKIE-KANSSILNLLLKILKT 327 (550)
Q Consensus 303 ~VlllDEIe-ka~~~v~~~Ll~~ld~ 327 (550)
.++++||.- .+++.....+.+++..
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 799999985 4677777777777753
No 334
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.27 E-value=0.0006 Score=68.86 Aligned_cols=83 Identities=20% Similarity=0.368 Sum_probs=54.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe-cCCCCchhh----------hhhHHhHHHHHHHhCCCCeEEe
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD-MGNYTELES----------IKHFFDSLAALVKKRPYSVVLF 307 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id-~s~~~~~~~----------~s~liG~lt~al~~~p~~Vlll 307 (550)
++++|+||+|+|||++.+++...+.. ....++.+. ..|+.-.+. ...+.-.+..++|..| .+|++
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~---~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~p-D~iii 203 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPP---EDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDP-DVIII 203 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHT---TTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS---SEEEE
T ss_pred eEEEEECCCccccchHHHHHhhhccc---cccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCC-Ccccc
Confidence 79999999999999999999998876 324555543 222221110 0011115566778888 79999
Q ss_pred ccccccCHHHHHHHHHhhhhc
Q 036633 308 DKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 308 DEIeka~~~v~~~Ll~~ld~g 328 (550)
.||-. ++.... ++....|
T Consensus 204 gEiR~--~e~~~~-~~a~~tG 221 (270)
T PF00437_consen 204 GEIRD--PEAAEA-IQAANTG 221 (270)
T ss_dssp SCE-S--CHHHHH-HHHHHTT
T ss_pred cccCC--HhHHHH-HHhhccC
Confidence 99984 467677 8899998
No 335
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.24 E-value=0.0035 Score=72.06 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=54.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCC--CceeEEecC--------CC--CchhhhhhHHhHHH----HHHHh--C
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDND--NHLIHFDMG--------NY--TELESIKHFFDSLA----ALVKK--R 300 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~--~~li~id~s--------~~--~~~~~~s~liG~lt----~al~~--~ 300 (550)
..+++.|+||||||++++++.+.+.. .. .+++-.--+ +. .+..++.+++|... ..... .
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~---~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~ 415 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEE---LGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPI 415 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccc
Confidence 38899999999999999999887754 22 122221111 10 01123334444110 00111 3
Q ss_pred CCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633 301 PYSVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 301 p~~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
+..+|++||+..++...+..|++.+..|
T Consensus 416 ~~~llIvDEaSMvd~~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 416 DCDLLIVDESSMMDTWLALSLLAALPDH 443 (720)
T ss_pred cCCEEEEeccccCCHHHHHHHHHhCCCC
Confidence 4579999999999999999999888665
No 336
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.0024 Score=58.93 Aligned_cols=84 Identities=27% Similarity=0.408 Sum_probs=53.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch--hhhhh-------HH-h-----HHHHHHHhCCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL--ESIKH-------FF-D-----SLAALVKKRPYS 303 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~--~~~s~-------li-G-----~lt~al~~~p~~ 303 (550)
..+.++||+|+|||++.++|+..+.. ... -+.++-...... ..... |- | .+..++-..| .
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~---~~G-~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~-~ 100 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP---TSG-EILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNP-D 100 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC---Ccc-EEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCC-C
Confidence 58899999999999999999987654 222 233433221110 00000 11 2 4566666666 7
Q ss_pred eEEecccc-ccCHHHHHHHHHhhhh
Q 036633 304 VVLFDKIE-KANSSILNLLLKILKT 327 (550)
Q Consensus 304 VlllDEIe-ka~~~v~~~Ll~~ld~ 327 (550)
++++||.. .+++.....+.+++..
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999986 5677777777777754
No 337
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.21 E-value=0.0028 Score=62.61 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++++||||+|||++|..++...
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 688999999999999999986543
No 338
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.21 E-value=0.00034 Score=65.18 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=24.5
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
|..++|+||||+|||++|+.||+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999999999855
No 339
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.20 E-value=0.0029 Score=66.96 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=30.5
Q ss_pred eeEEEeccCCCcHHHHH--HHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 239 GLFLFAGPNCSGKAELA--KAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lA--k~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
.-+++.||.|+||++|. ++|.. ..+.+.|||..+.+...
T Consensus 18 TFIvV~GPrGSGK~elV~d~~L~~--------r~~vL~IDC~~i~~ar~ 58 (431)
T PF10443_consen 18 TFIVVQGPRGSGKRELVMDHVLKD--------RKNVLVIDCDQIVKARG 58 (431)
T ss_pred eEEEEECCCCCCccHHHHHHHHhC--------CCCEEEEEChHhhhccC
Confidence 67789999999999998 55552 34689999998876443
No 340
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.19 E-value=0.0013 Score=69.53 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=56.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe-cCCCCchh--h----hhhHHh--------HHHHHHHhCCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD-MGNYTELE--S----IKHFFD--------SLAALVKKRPYS 303 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id-~s~~~~~~--~----~s~liG--------~lt~al~~~p~~ 303 (550)
+.++++||||+|||++.+++.+++.... ....++.+. -.||.-.+ . ...-+| .+..++|..| .
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~-~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~P-D 227 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETY-PDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAP-K 227 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCC-C
Confidence 6789999999999999999998874200 122444442 11221100 0 000011 4556778888 7
Q ss_pred eEEeccccccCHHHHHHHHHhhhhc
Q 036633 304 VVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 304 VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
+|++.|+- +++....+++....|
T Consensus 228 ~I~vGEiR--d~et~~~al~aa~TG 250 (372)
T TIGR02525 228 IIGVGEIR--DLETFQAAVLAGQSG 250 (372)
T ss_pred EEeeCCCC--CHHHHHHHHHHHhcC
Confidence 99999998 567778888999999
No 341
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.18 E-value=0.0023 Score=60.53 Aligned_cols=84 Identities=24% Similarity=0.358 Sum_probs=53.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc---h---hhhh------hHHh---------------
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE---L---ESIK------HFFD--------------- 291 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~---~---~~~s------~liG--------------- 291 (550)
..+.+.||+|+|||++.++|+..+.. .... +.+|...... . ..+. ..+|
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~-v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKP---SSGE-ILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC---CCcE-EEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 68899999999999999999987644 2322 3333222111 0 0000 0011
Q ss_pred -----HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633 292 -----SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKT 327 (550)
Q Consensus 292 -----~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~ 327 (550)
.+..++-..| .++++||-- .+++.....+.+++..
T Consensus 102 ~~qrl~laral~~~p-~llllDEP~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 102 ERQRVLLARALAQEP-PILLLDEPTSHLDIAHQIELLELLRR 142 (180)
T ss_pred HHHHHHHHHHHhcCC-CEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 5566666667 799999975 5677777777777754
No 342
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.18 E-value=0.0038 Score=58.67 Aligned_cols=84 Identities=20% Similarity=0.279 Sum_probs=52.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC---C-------------ch----hhhhh--HH-h----
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY---T-------------EL----ESIKH--FF-D---- 291 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~---~-------------~~----~~~s~--li-G---- 291 (550)
..+.++||+|+|||+|.++|+..+.. .... +.+|-... . +. .++.. |- |
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRP---TSGR-VRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC---CCCe-EEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHH
Confidence 57899999999999999999987643 2211 12211100 0 00 01110 11 2
Q ss_pred -HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633 292 -SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKT 327 (550)
Q Consensus 292 -~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~ 327 (550)
.+..++-..| .++++||.- .+++.....+++++..
T Consensus 105 v~la~al~~~p-~~lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 105 LGLARALYGNP-RILVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred HHHHHHHhcCC-CEEEEECCccccCHHHHHHHHHHHHH
Confidence 5566666777 799999985 5677777777777754
No 343
>PRK05439 pantothenate kinase; Provisional
Probab=97.15 E-value=0.00071 Score=69.52 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=56.3
Q ss_pred HHHhhhhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcC
Q 036633 157 ARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRR 236 (550)
Q Consensus 157 ~~~~~~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~ 236 (550)
+++..+.+....++.++|.+++- |++++. .+ ++........+...+... ....
T Consensus 32 ~~~~~l~~~~~~~~~~~v~~iy~-----plarli--------~~-------~~~~~~~~~~~~~~fl~~-------~~~~ 84 (311)
T PRK05439 32 EELERLRGLNDPISLEEVAEIYL-----PLSRLL--------NL-------YVAANQRLQAALEQFLGK-------NGQK 84 (311)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHH-----HHHHHH--------HH-------HHHhhHHHHHHHHHHhcc-------cCCC
Confidence 44556666677788888888775 544321 11 111111112222222211 1334
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
+|..+.+.||||+|||++|+.|+..+.... .......+.|..|-
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~-~~~~v~vi~~DdFy 128 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWP-EHPKVELVTTDGFL 128 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhC-CCCceEEEeccccc
Confidence 668899999999999999999999875300 12245567777764
No 344
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.12 E-value=0.00032 Score=63.23 Aligned_cols=25 Identities=44% Similarity=0.663 Sum_probs=22.1
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++++||||+|||++|+.+++.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~ 25 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGA 25 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCC
Confidence 4789999999999999999988743
No 345
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.11 E-value=0.0032 Score=60.62 Aligned_cols=44 Identities=23% Similarity=0.443 Sum_probs=33.3
Q ss_pred cCCCeeEEEeccCCCcHHHHHHHHHHHh-ccCCCCCCceeEEecCCCCchh
Q 036633 235 RRQLGLFLFAGPNCSGKAELAKAIANEL-YDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l-~~~~~~~~~li~id~s~~~~~~ 284 (550)
..+|..+++.||||+|||+++..+...+ .+ .++.||..++...+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~------~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGG------GIVVIDADEFRQFH 56 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-------SEEE-GGGGGGGS
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCC------CeEEEehHHHHHhc
Confidence 4577899999999999999999999887 44 78999988877654
No 346
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=97.10 E-value=0.0016 Score=70.28 Aligned_cols=200 Identities=16% Similarity=0.165 Sum_probs=119.2
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------CCCCcee
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------DNDNHLI 273 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------~~~~~li 273 (550)
..++|.++.|.+++..+... .+|+.. +...+++.||.|.||++++..+-+.+-..- -.+.||.
T Consensus 76 ~~ffG~eesI~~~v~~~~~a---a~~le~--~kqiL~LlGPVggGKSsl~e~lk~~~e~~pi~~~~~~~~~sPv~e~PL~ 150 (649)
T COG2766 76 NDFFGMEESIEQIVGYFKHA---AQGLEE--RKQILYLLGPVGGGKSSLAERLKRLMERVPIYDLDANGKGSPVHESPLH 150 (649)
T ss_pred hhhccHHHHHHHHHHHHhhh---hhccch--hhhhheeeccCCCchHHHHHHHHHHhhhCCceecccccCcCCCcCCCcc
Confidence 67899999999999999988 777421 226899999999999999999988774310 0122332
Q ss_pred EEe----------------------cCCCCch--------------------------------------hhhhhHHh--
Q 036633 274 HFD----------------------MGNYTEL--------------------------------------ESIKHFFD-- 291 (550)
Q Consensus 274 ~id----------------------~s~~~~~--------------------------------------~~~s~liG-- 291 (550)
-|+ ||.+... ..++.|.|
T Consensus 151 Lf~pd~l~~~~e~~ygi~~~~~~~~lsP~~~~rL~~E~~gdi~~~~Vv~~~~S~~r~~gIg~~eP~D~~nQD~s~L~G~V 230 (649)
T COG2766 151 LFPPDHLADDLEHEYGIRRRRLEGDLSPWARKRLDHEYGGDIEKFAVVKLNPSILRRIGIGKTEPGDENNQDISALTGKV 230 (649)
T ss_pred cCCHHHhhhhhhhhccchhhhccCCCCHHHHHHHHHHhCCccceeEEEEeecchhccceeeecCCCCCCCcchhHhhccc
Confidence 221 1100000 00111111
Q ss_pred ----------------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCC
Q 036633 292 ----------------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLK 354 (550)
Q Consensus 292 ----------------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g 354 (550)
.+.+++.+...|++=|-|.-|+|..++.-||.+-++| . +... |--...-+.+||..||-.
T Consensus 231 di~kL~~yge~DP~Aysy~Gal~~aNrGl~ef~Em~K~~~k~L~~lLtaTQEg--~-~k~~~~~~~i~~d~lIvahsNes 307 (649)
T COG2766 231 DISKLEHYGESDPRAYSYSGALCRANRGLMEFVEMFKAPIKVLHPLLTATQEG--N-YKGTEGIGAIPFDGLIVAHSNES 307 (649)
T ss_pred cHHHHhhcccCCchhhcccchhhcccchHHHHHHHHhCcHHHHHHHhcccccC--c-cCCCCCcCccccCceEEeecCcH
Confidence 2222333333367778888899999999999999999 6 5555 444444456677777742
Q ss_pred hHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCC-CHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHH
Q 036633 355 DEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPL-LDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL 433 (550)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL-~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~ 433 (550)
.-.... ...=+.+|++|+ .++.++ -. +-.+=.+|..+.|.. ..+....+.|.++
T Consensus 308 E~q~fk--------------~n~~nEAf~dRi-~~v~vP---Y~L~vseE~kIYEKll~~-------s~ls~~h~APhTL 362 (649)
T COG2766 308 EWQTFK--------------NNKNNEAFLDRI-YKVKVP---YCLRVSEEAKIYEKLLQN-------SELSDAHCAPHTL 362 (649)
T ss_pred HHHHhh--------------cCCchHHHHhhe-eeeecc---eeeeecHHHHHHHHHhcc-------ccccccccCchHH
Confidence 111100 112257899999 666665 22 334445666555532 3331245677776
Q ss_pred HHHHh
Q 036633 434 VHIAS 438 (550)
Q Consensus 434 ~~L~~ 438 (550)
+.++-
T Consensus 363 ~~aa~ 367 (649)
T COG2766 363 EVAAL 367 (649)
T ss_pred HHHHH
Confidence 66654
No 347
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.10 E-value=0.0033 Score=69.52 Aligned_cols=48 Identities=19% Similarity=0.347 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCC
Q 036633 292 SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 292 ~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~ 353 (550)
.+...+-.+| .++||||.- .++++..+.|++.+.+. + .++.||..+..
T Consensus 525 afARilL~kP-~~v~LDEATsALDe~~e~~l~q~l~~~----l---------p~~tvISV~Hr 573 (604)
T COG4178 525 AFARLLLHKP-KWVFLDEATSALDEETEDRLYQLLKEE----L---------PDATVISVGHR 573 (604)
T ss_pred HHHHHHHcCC-CEEEEecchhccChHHHHHHHHHHHhh----C---------CCCEEEEeccc
Confidence 4555666778 799999985 56899999999999875 2 45667776654
No 348
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.10 E-value=0.0035 Score=58.74 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=31.1
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
+++|.||||+|||+++..++..+.. .......+|+..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~---~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK---KGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEEcCCCC
Confidence 5789999999999999999988765 34466777776554
No 349
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.09 E-value=0.0034 Score=58.68 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=53.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec----CCCC-----chhhhh---------hHHh------HHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM----GNYT-----ELESIK---------HFFD------SLA 294 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~----s~~~-----~~~~~s---------~liG------~lt 294 (550)
..+.+.||+|+|||+++++|+..+.. ....+ .++- +-+. ...++. .|-| .+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i-~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW---GSGRI-GMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCceE-EECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 68899999999999999999987643 22211 1110 0000 000111 1111 566
Q ss_pred HHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633 295 ALVKKRPYSVVLFDKIE-KANSSILNLLLKILKT 327 (550)
Q Consensus 295 ~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~ 327 (550)
.++-..| .++++||.- .+++.....+.+++.+
T Consensus 104 ral~~~p-~~lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 104 RLLLHKP-KFVFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred HHHHcCC-CEEEEECCccccCHHHHHHHHHHHHH
Confidence 6777777 799999986 5678888888888864
No 350
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.08 E-value=0.0027 Score=60.08 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=48.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCC-CCC------CceeE---------EecCCCCchhhhhhHHh------HHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNN-DND------NHLIH---------FDMGNYTELESIKHFFD------SLAAL 296 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~------~~li~---------id~s~~~~~~~~s~liG------~lt~a 296 (550)
..+.+.||+|+|||+|.+++........ ... .++.. +++....-......|-| .+..+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lara 101 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASE 101 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHH
Confidence 6889999999999999999852100000 000 01111 12211100001111111 56667
Q ss_pred HHhC--CCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633 297 VKKR--PYSVVLFDKIE-KANSSILNLLLKILKT 327 (550)
Q Consensus 297 l~~~--p~~VlllDEIe-ka~~~v~~~Ll~~ld~ 327 (550)
+-.. | .++++||.- .+++.....|++.+.+
T Consensus 102 l~~~~~p-~llLlDEPt~~LD~~~~~~l~~~l~~ 134 (176)
T cd03238 102 LFSEPPG-TLFILDEPSTGLHQQDINQLLEVIKG 134 (176)
T ss_pred HhhCCCC-CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 7777 6 799999985 4677777777777653
No 351
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.07 E-value=0.0016 Score=68.45 Aligned_cols=89 Identities=20% Similarity=0.303 Sum_probs=52.5
Q ss_pred CeeEEEeccCCCcHHH-HHHHHHHHhccCCCCCCceeEEecCCCCchh-----hhhhHHh----------HHHHHHHh-C
Q 036633 238 LGLFLFAGPNCSGKAE-LAKAIANELYDNNDNDNHLIHFDMGNYTELE-----SIKHFFD----------SLAALVKK-R 300 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~-lAk~la~~l~~~~~~~~~li~id~s~~~~~~-----~~s~liG----------~lt~al~~-~ 300 (550)
++++.|+||||||||+ +|+.-|++....+...-.+|..| .|.=.. ....+.| .|.+++.. .
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD--tYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD--TYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR 280 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec--cchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence 4899999999999998 56666666523222333455555 443111 1122333 55555543 3
Q ss_pred CCCeEEeccccccCHHH--HHHHHHhhhhc
Q 036633 301 PYSVVLFDKIEKANSSI--LNLLLKILKTD 328 (550)
Q Consensus 301 p~~VlllDEIeka~~~v--~~~Ll~~ld~g 328 (550)
.+.+||+|=+.+-+.+. ..-|-.+++.+
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 34799999999877543 44455555444
No 352
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.0019 Score=62.09 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=32.7
Q ss_pred cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHh
Q 036633 207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
-.+|..+|++.|.-.+... .+.-|.||||||||++.|++-+.-
T Consensus 15 ~yYg~~~aL~~i~l~i~~~-------------~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 15 LYYGDKHALKDINLDIPKN-------------KVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred EEECchhhhccCceeccCC-------------ceEEEECCCCcCHHHHHHHHHhhc
Confidence 4678777776655444433 588899999999999999997653
No 353
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.06 E-value=0.0031 Score=70.78 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=23.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|+..+..
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC
Confidence 56799999999999999999998754
No 354
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.06 E-value=0.00046 Score=71.83 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
-.+.|.|||||||||+-|+||-.-..
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35679999999999999999987654
No 355
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.051 Score=58.27 Aligned_cols=112 Identities=15% Similarity=0.270 Sum_probs=58.7
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHh-ccCCCCCCceeEEecCCCCc---hhhhhhHHh----------HHHHHHHh-CC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANEL-YDNNDNDNHLIHFDMGNYTE---LESIKHFFD----------SLAALVKK-RP 301 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l-~~~~~~~~~li~id~s~~~~---~~~~s~liG----------~lt~al~~-~p 301 (550)
++..+.|+||+|+|||+++..||..+ ...+.....++..|...+.. -....++.| .+..++.. ..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 34799999999999999999888753 11110122334433322110 011223333 33333332 45
Q ss_pred CCeEEeccccccCHH--HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 302 YSVVLFDKIEKANSS--ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 302 ~~VlllDEIeka~~~--v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
+.++++|.....+.+ ....|-.+...+ . .-..++++.++.+...+..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~--~----------~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCG--T----------QVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccC--C----------CceEEEEEcCCCCHHHHHH
Confidence 679999998776642 333333222212 1 1235577777766555433
No 356
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.05 E-value=0.00078 Score=68.67 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=26.3
Q ss_pred CCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 236 RQLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
++|.++++.||||||||++|..||..+..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~ 118 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGI 118 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46788999999999999999999999855
No 357
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.04 E-value=0.0016 Score=61.59 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=25.7
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM 277 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~ 277 (550)
++++.||||+|||++|..++...-. ...+.+.+.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEEC
Confidence 4789999999999999988766544 3345555554
No 358
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.04 E-value=0.0077 Score=60.76 Aligned_cols=88 Identities=23% Similarity=0.396 Sum_probs=61.4
Q ss_pred CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchhhh----hhHHh--------HHHHHHHhCCC
Q 036633 237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELESI----KHFFD--------SLAALVKKRPY 302 (550)
Q Consensus 237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~~~----s~liG--------~lt~al~~~p~ 302 (550)
.| |-+|.+||+|+|||+..-++-.++... ...+++.+ |--||...+.- .+=+| .|..|+|+-|
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~--~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDP- 199 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKH--KAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDP- 199 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhcc--CCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCC-
Confidence 45 889999999999999888887777652 33344544 22233322111 12233 6667788888
Q ss_pred CeEEeccccccCHHHHHHHHHhhhhcccc
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKTDFNR 331 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~ 331 (550)
.|||+=|+- +.+....-|..-+.| .
T Consensus 200 DVIlvGEmR--D~ETi~~ALtAAETG--H 224 (353)
T COG2805 200 DVILVGEMR--DLETIRLALTAAETG--H 224 (353)
T ss_pred CEEEEeccc--cHHHHHHHHHHHhcC--C
Confidence 799999986 677888889999999 7
No 359
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.04 E-value=0.0061 Score=55.59 Aligned_cols=83 Identities=27% Similarity=0.330 Sum_probs=53.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC---CCCchhhhhhHHh-HHHHHHHhCCCCeEEecccc-cc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG---NYTELESIKHFFD-SLAALVKKRPYSVVLFDKIE-KA 313 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s---~~~~~~~~s~liG-~lt~al~~~p~~VlllDEIe-ka 313 (550)
..+.+.||+|+|||+++++|+..+.. .... +.+|-. .|....+....-- .+..++-..| .++++||-. .+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~-i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p-~illlDEP~~~L 101 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP---DEGI-VTWGSTVKIGYFEQLSGGEKMRLALAKLLLENP-NLLLLDEPTNHL 101 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC---CceE-EEECCeEEEEEEccCCHHHHHHHHHHHHHhcCC-CEEEEeCCccCC
Confidence 68899999999999999999987644 2222 222210 0111011000000 5677777777 799999985 56
Q ss_pred CHHHHHHHHHhhh
Q 036633 314 NSSILNLLLKILK 326 (550)
Q Consensus 314 ~~~v~~~Ll~~ld 326 (550)
++.....|.+.+.
T Consensus 102 D~~~~~~l~~~l~ 114 (144)
T cd03221 102 DLESIEALEEALK 114 (144)
T ss_pred CHHHHHHHHHHHH
Confidence 7877788887775
No 360
>PRK06547 hypothetical protein; Provisional
Probab=97.04 E-value=0.00098 Score=62.84 Aligned_cols=28 Identities=32% Similarity=0.253 Sum_probs=24.5
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+|..+++.||||+|||++|+.|++.+..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~ 41 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGF 41 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5578889999999999999999998644
No 361
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.04 E-value=0.0021 Score=74.22 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=106.3
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC----e-eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL----G-LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p----~-~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
+.+.|...+...+.+.+..++..+..-...+.| . ++++.||||+|||+.|.+.+..+.- .++.+|.+..
T Consensus 320 k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~------~v~E~Nas~~ 393 (871)
T KOG1968|consen 320 KALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGF------KVVEKNASDV 393 (871)
T ss_pred HhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccc------ceeecCcccc
Confidence 345566555556666665541101001111223 1 4689999999999999999999866 7888887765
Q ss_pred CchhhhhhHHh------HHHHH--------HHhCCCCeEEeccccccCH---HHHHHHHHhhhhccccccccCCeEeecC
Q 036633 281 TELESIKHFFD------SLAAL--------VKKRPYSVVLFDKIEKANS---SILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 281 ~~~~~~s~liG------~lt~a--------l~~~p~~VlllDEIeka~~---~v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
........-+| .+.+. .....+.||++||++-+.. +.+..+-+++..- .
T Consensus 394 RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks--~------------ 459 (871)
T KOG1968|consen 394 RSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKS--S------------ 459 (871)
T ss_pred ccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHhc--c------------
Confidence 53322222223 11111 1123455999999998766 5666677777643 2
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCC-hhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFK-PSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK 422 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~-p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~ 422 (550)
.=+|||+|- ..++ ..-+.|-...+.|. ..+.+.+..-+-..+. ..+
T Consensus 460 -~Piv~~cnd----------------------r~~p~sr~~~~~~~~l~f~---kP~~~~i~~ri~si~~-------se~ 506 (871)
T KOG1968|consen 460 -RPLVCTCND----------------------RNLPKSRALSRACSDLRFS---KPSSELIRSRIMSICK-------SEG 506 (871)
T ss_pred -CCeEEEecC----------------------CCCccccchhhhcceeeec---CCcHHHHHhhhhhhhc-------ccc
Confidence 117888883 2232 22344433567888 7777766655554442 233
Q ss_pred CccccCCHHHHHHHHhcC
Q 036633 423 AVIVCPSTSALVHIASNA 440 (550)
Q Consensus 423 ~~~l~~~~~a~~~L~~~~ 440 (550)
+.++++.++-+...+
T Consensus 507 ---~ki~~~~l~~~s~~~ 521 (871)
T KOG1968|consen 507 ---IKISDDVLEEISKLS 521 (871)
T ss_pred ---eecCcHHHHHHHHhc
Confidence 468999999888754
No 362
>PRK08233 hypothetical protein; Provisional
Probab=97.01 E-value=0.0019 Score=60.64 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG 278 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s 278 (550)
..+.+.|+||+|||++|+.|+..+.. .+++.+|.-
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~-----~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKN-----SKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC-----CceEEECCE
Confidence 57889999999999999999998853 155666544
No 363
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.01 E-value=0.0031 Score=60.86 Aligned_cols=94 Identities=10% Similarity=0.223 Sum_probs=61.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL 318 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~ 318 (550)
.+++|.|+-|+|||+..+.|....|. .. +.....+.... .+..+ -++.+||++.....-+
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~~~---d~-------~~~~~~kd~~~--------~l~~~--~iveldEl~~~~k~~~ 112 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEYFS---DS-------INDFDDKDFLE--------QLQGK--WIVELDELDGLSKKDV 112 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHhcc---Cc-------cccCCCcHHHH--------HHHHh--HheeHHHHhhcchhhH
Confidence 78999999999999999999877655 11 11111122221 22222 3899999999998888
Q ss_pred HHHHHhhhhccccccccC-CeE-ee-cCCeEEEEeCCC
Q 036633 319 NLLLKILKTDFNRKATRG-IAA-FD-LTNTLIIMTSDL 353 (550)
Q Consensus 319 ~~Ll~~ld~g~~~~l~d~-g~~-vd-~~~~iiI~TsN~ 353 (550)
+.|-.++...... ++-. |+. .+ .++++||.|||.
T Consensus 113 ~~lK~~iT~~~~~-~R~pY~~~~~~~~R~~~figTtN~ 149 (198)
T PF05272_consen 113 EALKSFITRRTDT-YRPPYGRDPEEFPRRAVFIGTTND 149 (198)
T ss_pred HHHHHHhccccee-eecCCcCcceeeceeEEEEeccCC
Confidence 8888887655323 3333 322 33 466789999995
No 364
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.0052 Score=58.61 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=24.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
-++-+.||.|.|||++.+.||..|..
T Consensus 29 ei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 29 EITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred eEEEEEcCCCCCchhHHHHHHHhccC
Confidence 57789999999999999999999976
No 365
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.0025 Score=62.44 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++-++||||+|||+++++|+-....
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 68999999999999999999976644
No 366
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0045 Score=61.03 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=29.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE 282 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~ 282 (550)
--++|.||||+|||++.+.|-+.+-. ++ --|.||-.+.++
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiep---t~-G~I~i~g~~i~~ 67 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEP---TS-GEILIDGEDISD 67 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC---CC-ceEEECCeeccc
Confidence 46789999999999999999988765 33 345665544443
No 367
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.0027 Score=59.92 Aligned_cols=84 Identities=21% Similarity=0.293 Sum_probs=52.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe---cCCC--------------------Cchhhhhh-----HH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD---MGNY--------------------TELESIKH-----FF 290 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id---~s~~--------------------~~~~~~s~-----li 290 (550)
..+.+.||+|+|||+++++|+..+.. .... +.++ .+.+ -...++.. |-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEP---DSGS-ILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC---CceE-EEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 68889999999999999999976543 1111 1111 1110 00011111 11
Q ss_pred -h-----HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633 291 -D-----SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKT 327 (550)
Q Consensus 291 -G-----~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~ 327 (550)
| .+..++-..| .++++||-- -+++.....|.+++..
T Consensus 103 ~G~~qr~~la~al~~~p-~llilDEP~~~LD~~~~~~l~~~l~~ 145 (178)
T cd03229 103 GGQQQRVALARALAMDP-DVLLLDEPTSALDPITRREVRALLKS 145 (178)
T ss_pred HHHHHHHHHHHHHHCCC-CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 2 5666777777 799999975 4678878888877764
No 368
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.98 E-value=0.0012 Score=60.98 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=56.5
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh------------hhhHHhHHHHHHHhCCCCe
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES------------IKHFFDSLAALVKKRPYSV 304 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~------------~s~liG~lt~al~~~p~~V 304 (550)
+|.++.|+|.||+|||++|++|.+.|+. ...+.+.+|...+..... ..+-++.+...+.+.. .+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~---~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G-~i 76 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFA---RGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQG-II 76 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHH---TTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT-SE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC-Ce
Confidence 3578999999999999999999999998 667888888766553211 1112224444444433 56
Q ss_pred EEeccccccCHHHHHHHHHhhhhc
Q 036633 305 VLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 305 lllDEIeka~~~v~~~Ll~~ld~g 328 (550)
++..=|. ...+..+...+.+.++
T Consensus 77 vIva~is-p~~~~R~~~R~~~~~~ 99 (156)
T PF01583_consen 77 VIVAFIS-PYREDREWARELIPNE 99 (156)
T ss_dssp EEEE-----SHHHHHHHHHHHHTT
T ss_pred EEEeecc-CchHHHHHHHHhCCcC
Confidence 6666333 3367778888888775
No 369
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.97 E-value=0.0041 Score=69.93 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=22.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.++||||+|||++++.|...+
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 677999999999999999999987
No 370
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.97 E-value=0.003 Score=60.14 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=50.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh--hh--------h------hHHhHHHHHHHhCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE--SI--------K------HFFDSLAALVKKRP 301 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~--~~--------s------~liG~lt~al~~~p 301 (550)
..++|+||+|+|||+++++|...+.. .. ..+.+ |..++.-.+ .+ . .+...+..+++..|
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~---~~-~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~p 101 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPP---DE-RIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRP 101 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCC---CC-CEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCC
Confidence 68999999999999999999988754 22 22222 111111000 00 0 00013445667777
Q ss_pred CCeEEeccccccCHHHHHHHHHhhhhc
Q 036633 302 YSVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 302 ~~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
.++++.|+-. ++... +++....|
T Consensus 102 -d~i~igEir~--~ea~~-~~~a~~tG 124 (186)
T cd01130 102 -DRIIVGEVRG--GEALD-LLQAMNTG 124 (186)
T ss_pred -CEEEEEccCc--HHHHH-HHHHHhcC
Confidence 7999999974 55554 67777888
No 371
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.97 E-value=0.0055 Score=63.88 Aligned_cols=82 Identities=17% Similarity=0.313 Sum_probs=54.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCc---hhhhh-------------hHHhHHHHHHHhCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTE---LESIK-------------HFFDSLAALVKKRP 301 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~---~~~~s-------------~liG~lt~al~~~p 301 (550)
++++++||||+|||++.++|...+.. . ..++.+ |-.|+.- ++.++ .+-..+..++|.+|
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~---~-~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~P 236 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPA---I-ERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRP 236 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCC---C-CeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCC
Confidence 69999999999999999999998865 2 234443 2222221 00000 00114556777788
Q ss_pred CCeEEeccccccCHHHHHHHHHhhhhc
Q 036633 302 YSVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 302 ~~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
.+|++.|+-- ++... +++.+..|
T Consensus 237 -D~IivGEiR~--~ea~~-~l~a~~tG 259 (332)
T PRK13900 237 -DRIIVGELRG--AEAFS-FLRAINTG 259 (332)
T ss_pred -CeEEEEecCC--HHHHH-HHHHHHcC
Confidence 7999999984 56654 68888888
No 372
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.97 E-value=0.0038 Score=60.86 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|.++|+..+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5889999999999999999998764
No 373
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.97 E-value=0.006 Score=59.08 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|+++|+..+.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5889999999999999999998764
No 374
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.069 Score=61.11 Aligned_cols=86 Identities=13% Similarity=0.209 Sum_probs=50.1
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhc-cCCCCCCceeEEecCCCCchh-----hhhhHHh----------HHHHHHHh-C
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELY-DNNDNDNHLIHFDMGNYTELE-----SIKHFFD----------SLAALVKK-R 300 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~-~~~~~~~~li~id~s~~~~~~-----~~s~liG----------~lt~al~~-~ 300 (550)
+.+++|+||+|+|||+++..||..+. .. ....+.-+++..|.-.. ......| .+.+++.. .
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~--G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE--GADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc--CCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc
Confidence 47999999999999999999887662 20 12234444444443111 1112222 44444443 4
Q ss_pred CCCeEEeccccccCH--HHHHHHHHhh
Q 036633 301 PYSVVLFDKIEKANS--SILNLLLKIL 325 (550)
Q Consensus 301 p~~VlllDEIeka~~--~v~~~Ll~~l 325 (550)
.+.+||+|=....|. .+...+-.+.
T Consensus 263 ~~D~VLIDTAGRs~~d~~l~eel~~l~ 289 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRNVSEQIAMLC 289 (767)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHh
Confidence 568999999987663 3444443333
No 375
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.0033 Score=59.08 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=52.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC--------------------CCchhhhhh---HH-h---
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN--------------------YTELESIKH---FF-D--- 291 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~--------------------~~~~~~~s~---li-G--- 291 (550)
..+.++||+|+|||++.+.|+..+.. .... +.+|-.. +-...++.. |- |
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~q 102 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKP---DSGE-IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQ 102 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC---CCeE-EEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHH
Confidence 58899999999999999999987643 1111 1111100 000011111 11 2
Q ss_pred --HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633 292 --SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKT 327 (550)
Q Consensus 292 --~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~ 327 (550)
.+..++-..| .|+++||.- .+++.....+++++..
T Consensus 103 rv~laral~~~p-~illlDEPt~~LD~~~~~~l~~~l~~ 140 (173)
T cd03230 103 RLALAQALLHDP-ELLILDEPTSGLDPESRREFWELLRE 140 (173)
T ss_pred HHHHHHHHHcCC-CEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 5666677777 799999985 4567777777777764
No 376
>PF14516 AAA_35: AAA-like domain
Probab=96.95 E-value=0.017 Score=60.37 Aligned_cols=176 Identities=11% Similarity=0.136 Sum_probs=98.7
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch--hhhh
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL--ESIK 287 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~--~~~s 287 (550)
+...+-+.+.+.+... +..+.+.||-.+|||++...+.+.+.. .....+.+||...... ....
T Consensus 15 ~R~~~e~~~~~~i~~~------------G~~~~I~apRq~GKTSll~~l~~~l~~---~~~~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 15 ERPPAEQECYQEIVQP------------GSYIRIKAPRQMGKTSLLLRLLERLQQ---QGYRCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CchHHHHHHHHHHhcC------------CCEEEEECcccCCHHHHHHHHHHHHHH---CCCEEEEEEeecCCCcccCCHH
Confidence 4444566666666532 157889999999999999999888876 5667888998876431 1111
Q ss_pred hHHh--------------------------------HHHHHH-HhCC-CCeEEeccccccCH--HHHHHHHHhhhhcccc
Q 036633 288 HFFD--------------------------------SLAALV-KKRP-YSVVLFDKIEKANS--SILNLLLKILKTDFNR 331 (550)
Q Consensus 288 ~liG--------------------------------~lt~al-~~~p-~~VlllDEIeka~~--~v~~~Ll~~ld~g~~~ 331 (550)
.+.. .+.+.+ .... .=||+|||||.+.. .+.+-|+..|... .
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~--~ 157 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSW--Y 157 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHH--H
Confidence 1111 122221 1211 24889999998864 4555555555443 2
Q ss_pred ccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633 332 KATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 332 ~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l 411 (550)
- .....-.+++..+|++........ ...-.++| .+..-|... +++.+++..++..
T Consensus 158 -~-~~~~~~~~~~L~li~~~~t~~~~~----------------~~~~~SPF--NIg~~i~L~---~Ft~~ev~~L~~~-- 212 (331)
T PF14516_consen 158 -E-QRKNNPIWQKLRLILAGSTEDYII----------------LDINQSPF--NIGQPIELP---DFTPEEVQELAQR-- 212 (331)
T ss_pred -H-hcccCcccceEEEEEecCcccccc----------------cCCCCCCc--ccccceeCC---CCCHHHHHHHHHh--
Confidence 1 101111233344444332211110 11223345 333456666 9999998876543
Q ss_pred HHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633 412 EETKRRNNDSKAVIVCPSTSALVHIASN 439 (550)
Q Consensus 412 ~~~~~~l~~~~~~~l~~~~~a~~~L~~~ 439 (550)
+ .+.+++..++.|...
T Consensus 213 ---------~---~~~~~~~~~~~l~~~ 228 (331)
T PF14516_consen 213 ---------Y---GLEFSQEQLEQLMDW 228 (331)
T ss_pred ---------h---hccCCHHHHHHHHHH
Confidence 2 336777778877764
No 377
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.0043 Score=60.14 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=22.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
+.+.+.||+|+|||+|+++|+..+.
T Consensus 26 g~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 26 GMYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred CcEEEECCCCCCHHHHHHHHhCCCC
Confidence 5889999999999999999997654
No 378
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.93 E-value=0.0054 Score=59.76 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=23.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.+.||+|+|||++.+.|+..+..
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~~ 39 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDAP 39 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccC
Confidence 58889999999999999999987654
No 379
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.93 E-value=0.0063 Score=58.91 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=22.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||++.++|+....
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6889999999999999999998764
No 380
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.92 E-value=0.0059 Score=56.64 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=20.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+-+.+++++|+|||++|-.+|-..-+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~ 28 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG 28 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45667777899999999888876655
No 381
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.92 E-value=0.0051 Score=70.69 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=23.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|+..+..
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~~p 517 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLYQP 517 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57899999999999999999987654
No 382
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.92 E-value=0.0038 Score=71.22 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=23.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
-.+.++|++|+||||++|.+...+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46899999999999999999987654
No 383
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.91 E-value=0.0079 Score=64.34 Aligned_cols=121 Identities=20% Similarity=0.179 Sum_probs=74.8
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHh---CCCCeEEeccccccCHH
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKK---RPYSVVLFDKIEKANSS 316 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~---~p~~VlllDEIeka~~~ 316 (550)
..++.||-+||||++.+.+.+.+.. .++.++.-+....... + .....+... .....+|||||+....
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~------~~iy~~~~d~~~~~~~--l-~d~~~~~~~~~~~~~~yifLDEIq~v~~- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE------EIIYINFDDLRLDRIE--L-LDLLRAYIELKEREKSYIFLDEIQNVPD- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc------ceEEEEecchhcchhh--H-HHHHHHHHHhhccCCceEEEecccCchh-
Confidence 8999999999999999999887754 3666665444322111 1 111111111 1336899999997754
Q ss_pred HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCC
Q 036633 317 ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAV 396 (550)
Q Consensus 317 v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~ 396 (550)
.+..+-.+.|.| . . -++|.+||... +.+...+.|.+|. ..+.+.
T Consensus 109 W~~~lk~l~d~~--~-~-----------~v~itgsss~l------------------l~~~~~~~L~GR~-~~~~l~--- 152 (398)
T COG1373 109 WERALKYLYDRG--N-L-----------DVLITGSSSSL------------------LSKEISESLAGRG-KDLELY--- 152 (398)
T ss_pred HHHHHHHHHccc--c-c-----------eEEEECCchhh------------------hccchhhhcCCCc-eeEEEC---
Confidence 666666666767 4 1 23555555421 1123345677886 677888
Q ss_pred CCCHHHHHHH
Q 036633 397 PLLDTTRLLL 406 (550)
Q Consensus 397 pL~~e~i~~I 406 (550)
|||-.+....
T Consensus 153 PlSF~Efl~~ 162 (398)
T COG1373 153 PLSFREFLKL 162 (398)
T ss_pred CCCHHHHHhh
Confidence 8998877543
No 384
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.91 E-value=0.0007 Score=63.78 Aligned_cols=34 Identities=24% Similarity=0.566 Sum_probs=27.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG 278 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s 278 (550)
..++|.||||+|||++|+.|++.+.. ++++++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~------~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE------PWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC------CccccCcc
Confidence 37899999999999999999998755 56655543
No 385
>PRK03839 putative kinase; Provisional
Probab=96.91 E-value=0.00083 Score=63.46 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.6
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++|.|+||+|||++|+.||+.+.-
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999854
No 386
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.91 E-value=0.0061 Score=62.94 Aligned_cols=82 Identities=15% Similarity=0.332 Sum_probs=51.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe-cCCCCch--hhhh-------------hHHhHHHHHHHhCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD-MGNYTEL--ESIK-------------HFFDSLAALVKKRPY 302 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id-~s~~~~~--~~~s-------------~liG~lt~al~~~p~ 302 (550)
.+++++||+|+|||+++++|...+.. .. ..+.++ ..++.-. ..+. .+--.+..+++..|
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~---~~-~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p- 219 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPK---DE-RIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP- 219 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCc---cc-cEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCC-
Confidence 69999999999999999999988754 22 233332 1122111 0000 00004455677777
Q ss_pred CeEEeccccccCHHHHHHHHHhhhhc
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
.++++||+-. .++.. +++.+..|
T Consensus 220 d~ii~gE~r~--~e~~~-~l~a~~~g 242 (308)
T TIGR02788 220 DRIILGELRG--DEAFD-FIRAVNTG 242 (308)
T ss_pred CeEEEeccCC--HHHHH-HHHHHhcC
Confidence 7999999984 56654 56666666
No 387
>PRK13947 shikimate kinase; Provisional
Probab=96.90 E-value=0.00088 Score=62.56 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=26.7
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
++++.|+||+|||++|+.||+.+.- +|+..|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~------~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF------GFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC------CEEECc
Confidence 6899999999999999999999866 665544
No 388
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.90 E-value=0.0045 Score=69.69 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|+..+..
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 57899999999999999999987654
No 389
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.90 E-value=0.0084 Score=61.80 Aligned_cols=101 Identities=17% Similarity=0.268 Sum_probs=62.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc-hhh-hhhHHh------HHHHHHHhCCCCeEEeccc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE-LES-IKHFFD------SLAALVKKRPYSVVLFDKI 310 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~-~~~-~s~liG------~lt~al~~~p~~VlllDEI 310 (550)
..+.|+||-|+|||.|--..-..+.. ..+ .++..-.|+. .|. ...+.| .+...+. ..+.||+|||+
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~---~~k--~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~-~~~~vLCfDEF 139 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYESLPG---ERK--RRLHFHRFMARVHQRLHTLQGQTDPLPPIADELA-AETRVLCFDEF 139 (367)
T ss_pred ceEEEECCCCccHHHHHHHHHhhCCc---ccc--ccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHH-hcCCEEEeeee
Confidence 78999999999999999999988866 221 2233223321 111 223334 2222222 23469999999
Q ss_pred cccCHH---HHHHHHHh-hhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633 311 EKANSS---ILNLLLKI-LKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV 361 (550)
Q Consensus 311 eka~~~---v~~~Ll~~-ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~ 361 (550)
+=-+.. ++.-|+.. +.+| +++++|||...+.+...
T Consensus 140 ~VtDI~DAMiL~rL~~~Lf~~G----------------V~lvaTSN~~P~~LY~d 178 (367)
T COG1485 140 EVTDIADAMILGRLLEALFARG----------------VVLVATSNTAPDNLYKD 178 (367)
T ss_pred eecChHHHHHHHHHHHHHHHCC----------------cEEEEeCCCChHHhccc
Confidence 865554 34433333 3444 46899999988887653
No 390
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.001 Score=68.86 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.-+.|+||||||||++.++||-....
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 47889999999999999999976643
No 391
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.89 E-value=0.0053 Score=62.96 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=23.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.|.||+|.|||++.++|+..+..
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 58999999999999999999988764
No 392
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.89 E-value=0.0049 Score=60.14 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
..++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999984
No 393
>PLN02200 adenylate kinase family protein
Probab=96.87 E-value=0.0011 Score=65.80 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=29.8
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
.|..++++||||+|||++|+.||+.+ .+.+++++++
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~--------g~~his~gdl 77 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF--------GFKHLSAGDL 77 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh--------CCeEEEccHH
Confidence 34788999999999999999999986 3567777665
No 394
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.87 E-value=0.021 Score=59.43 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=46.2
Q ss_pred hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633 203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG 278 (550)
Q Consensus 203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s 278 (550)
.+...|.+.+..+..+...+-.. +..-|.++.++|.+|||||++.+.+-+.+.. +.+.++|-
T Consensus 3 ~l~~~v~~Re~qi~~L~~Llg~~--------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~------~~vw~n~~ 64 (438)
T KOG2543|consen 3 VLEPNVPCRESQIRRLKSLLGNN--------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL------ENVWLNCV 64 (438)
T ss_pred ccccCccchHHHHHHHHHHhCCC--------CcccceeEEEeccCCCchhHHHHHHHhhcCC------cceeeehH
Confidence 45667888888888776666543 2234577799999999999999999988755 66666654
No 395
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.86 E-value=0.003 Score=59.86 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=53.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec---CCCCchhhhhhHHh-----HHHHHHHhCCCCeEEeccc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM---GNYTELESIKHFFD-----SLAALVKKRPYSVVLFDKI 310 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~---s~~~~~~~~s~liG-----~lt~al~~~p~~VlllDEI 310 (550)
..+.+.||+|+|||+|.+.|+..+.. .... +.++- +-.......| -| .+..++-..| .++++||.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~-i~~~g~~i~~~~q~~~LS--gGq~qrv~laral~~~p-~lllLDEP 98 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP---NGDN-DEWDGITPVYKPQYIDLS--GGELQRVAIAAALLRNA-TFYLFDEP 98 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC---CCcE-EEECCEEEEEEcccCCCC--HHHHHHHHHHHHHhcCC-CEEEEECC
Confidence 68899999999999999999987654 2222 33321 1111110111 12 5666777777 79999998
Q ss_pred c-ccCHHHHHHHHHhhhh
Q 036633 311 E-KANSSILNLLLKILKT 327 (550)
Q Consensus 311 e-ka~~~v~~~Ll~~ld~ 327 (550)
- .+++.....+.+.+..
T Consensus 99 ts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 99 SAYLDIEQRLNAARAIRR 116 (177)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 5 5677777767666653
No 396
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.85 E-value=0.0064 Score=65.93 Aligned_cols=179 Identities=16% Similarity=0.106 Sum_probs=101.9
Q ss_pred HHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcC--CC-eeEEEeccCCCcHHHHHHHHHHHhccC----CCC
Q 036633 196 RYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRR--QL-GLFLFAGPNCSGKAELAKAIANELYDN----NDN 268 (550)
Q Consensus 196 ~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~--~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~----~~~ 268 (550)
.+.-|...|.-.|+|++..+++|.-.+.-.- ...+.+.. |. -++|++|.|.|-|+-|.+.+-+..... |.+
T Consensus 291 iFdlLa~SLAPSI~GH~~vKkAillLLlGGv--Ek~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRG 368 (818)
T KOG0479|consen 291 IFDLLARSLAPSIYGHDYVKKAILLLLLGGV--EKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRG 368 (818)
T ss_pred HHHHHhhccCcccccHHHHHHHHHHHHhccc--eeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCC
Confidence 3556677788999999999998776654321 11222222 23 689999999999999999887654320 000
Q ss_pred CCceeEEecCCCCchhhhhhHHh--HH-HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC--CeEeec-
Q 036633 269 DNHLIHFDMGNYTELESIKHFFD--SL-AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG--IAAFDL- 342 (550)
Q Consensus 269 ~~~li~id~s~~~~~~~~s~liG--~l-t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~--g~~vd~- 342 (550)
.+- +-+..+--++ +--| .| .+|.--.-.+||+|||++|++.-=..++-.+++.| + +|-. |-...+
T Consensus 369 SSG-VGLTAAVTtD-----~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQq--t-VTIaKAGIHasLN 439 (818)
T KOG0479|consen 369 SSG-VGLTAAVTTD-----QETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQ--T-VTIAKAGIHASLN 439 (818)
T ss_pred CCC-ccceeEEeec-----cccchhhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcc--e-EEeEeccchhhhc
Confidence 000 0000000000 0011 11 11111123589999999999988788899999999 5 5554 533222
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID 393 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~ 393 (550)
-+|-++++.|.-...... +...++. =.++..|++|||-++...
T Consensus 440 ARCSVlAAANPvyG~Yd~------~k~P~eN--IgLpDSLLSRFDLlFv~l 482 (818)
T KOG0479|consen 440 ARCSVLAAANPVYGQYDQ------SKTPMEN--IGLPDSLLSRFDLLFVVL 482 (818)
T ss_pred cceeeeeecCccccccCC------CCChhhc--cCCcHHHHhhhcEEEEEe
Confidence 235677888863211100 0000100 145778999999765544
No 397
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.85 E-value=0.00099 Score=60.85 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.6
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+++++||||+|||++|+.||+.+.-
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999844
No 398
>PRK00625 shikimate kinase; Provisional
Probab=96.85 E-value=0.001 Score=62.76 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=23.0
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+++|+|+||+|||++++.||+.+.-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999999854
No 399
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=96.85 E-value=0.0016 Score=69.46 Aligned_cols=183 Identities=11% Similarity=0.169 Sum_probs=100.8
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEe
Q 036633 166 KLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFA 244 (550)
Q Consensus 166 ~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~ 244 (550)
+..-|.++.-+++-+..|.-...+.. .+++.-|. +.+--. .+ -+++=.
T Consensus 166 R~~FT~eEWiD~LlrS~G~eP~~~~~--r~Kl~~L~------------------RLiPlV-----------E~N~NliEL 214 (457)
T PF13337_consen 166 RKEFTTEEWIDLLLRSIGYEPSGFSE--RQKLLLLA------------------RLIPLV-----------ERNYNLIEL 214 (457)
T ss_pred HHhcCHHHHHHHHHHhcCCCccccCH--HHHHHHHH------------------hHHHhc-----------ccccceEEE
Confidence 44566666677777777776666543 23332221 111111 22 689999
Q ss_pred ccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHH-HHHHH-hCCCCeEEeccccccC---HHHHH
Q 036633 245 GPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSL-AALVK-KRPYSVVLFDKIEKAN---SSILN 319 (550)
Q Consensus 245 Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~l-t~al~-~~p~~VlllDEIeka~---~~v~~ 319 (550)
||.|||||++=+-++.+.. .+..+.. +++.||... +...- =.-+.+|.||||.... ++..+
T Consensus 215 gPrGTGKS~vy~eiSp~~~----------liSGG~~----T~A~LFyn~~~~~~GlV~~~D~VafDEv~~i~f~d~d~i~ 280 (457)
T PF13337_consen 215 GPRGTGKSYVYKEISPYGI----------LISGGQV----TVAKLFYNMSTGQIGLVGRWDVVAFDEVAGIKFKDKDEIQ 280 (457)
T ss_pred cCCCCCceeehhhcCcccE----------EEECCCc----chHHheeeccCCcceeeeeccEEEEEeccCcccCChHHHH
Confidence 9999999999776664421 1221111 344444310 00000 0135799999998765 77779
Q ss_pred HHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCC-ChhhhhhccceeEecCCCCC
Q 036633 320 LLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLF-KPSLLKLLDKLVVIDLAVPL 398 (550)
Q Consensus 320 ~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f-~p~ll~Rid~ii~f~~~~pL 398 (550)
+|-..|++| . ++.++..+ ..++=+||..|.......- .. ...+...+-+.| ..+|+.||...++=--.|.+
T Consensus 281 imK~YMesG--~-fsRG~~~i-~a~as~vf~GNi~~~v~~~-~~---~~~lf~~lP~~~~DsAflDRiH~~iPGWeiPk~ 352 (457)
T PF13337_consen 281 IMKDYMESG--S-FSRGKEEI-NADASMVFVGNINQSVENM-LK---TSHLFEPLPEEMRDSAFLDRIHGYIPGWEIPKI 352 (457)
T ss_pred HHHHHHhcc--c-eeeccccc-ccceeEEEEcCcCCcchhc-cc---cchhhhhcCHHHHHHHHHhHhheeccCcccccc
Confidence 999999999 7 77763222 2445588888876322110 00 011222222233 57899999666552112266
Q ss_pred CHH
Q 036633 399 LDT 401 (550)
Q Consensus 399 ~~e 401 (550)
+.+
T Consensus 353 ~~e 355 (457)
T PF13337_consen 353 RPE 355 (457)
T ss_pred CHH
Confidence 654
No 400
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.84 E-value=0.0055 Score=63.00 Aligned_cols=85 Identities=22% Similarity=0.325 Sum_probs=52.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe-cCCCCch--hh--------hhhHHhHHHHHHHhCCCCeEEe
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD-MGNYTEL--ES--------IKHFFDSLAALVKKRPYSVVLF 307 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id-~s~~~~~--~~--------~s~liG~lt~al~~~p~~Vlll 307 (550)
++++++||+|+|||+++++|...+.... .+..++.+. ..|+.-. +. ...+-..+..++|..| ..|++
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~-~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~p-D~iiv 210 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKND-PTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRP-DRIIV 210 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccC-CCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCC-CEEEE
Confidence 5899999999999999999998874300 122333321 1111100 00 0011114566778888 79999
Q ss_pred ccccccCHHHHHHHHHhhhhc
Q 036633 308 DKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 308 DEIeka~~~v~~~Ll~~ld~g 328 (550)
.|+-. ++... +++.+..|
T Consensus 211 GEiR~--~ea~~-~l~a~~tG 228 (299)
T TIGR02782 211 GEVRG--GEALD-LLKAWNTG 228 (299)
T ss_pred eccCC--HHHHH-HHHHHHcC
Confidence 99984 45554 57888888
No 401
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.0082 Score=59.10 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+++++|+..+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc
Confidence 5889999999999999999998764
No 402
>PRK14532 adenylate kinase; Provisional
Probab=96.84 E-value=0.001 Score=63.36 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=28.0
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
.++|.||||+|||++|+.||+.+ .+..++++++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~--------g~~~is~~d~l 35 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER--------GMVQLSTGDML 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc--------CCeEEeCcHHH
Confidence 47899999999999999999876 45667766554
No 403
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.83 E-value=0.0046 Score=68.65 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||||+|||++++.|...+..
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 67899999999999999999987654
No 404
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.83 E-value=0.0047 Score=59.74 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=32.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
..++++||||+|||.+|..++..... ...+.+.+++.+
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~---~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAAR---QGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCC
Confidence 68899999999999999999887655 455788888865
No 405
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.82 E-value=0.0071 Score=57.87 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=50.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc---cCC---CCCCc-------eeEE--ecCCCCchhhhh----------hHH-h-
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY---DNN---DNDNH-------LIHF--DMGNYTELESIK----------HFF-D- 291 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~---~~~---~~~~~-------li~i--d~s~~~~~~~~s----------~li-G- 291 (550)
..+.++||+|+|||++.++|+-... ..| ....+ -+.+ ....+....++. .|- |
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe 113 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQ 113 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCHHH
Confidence 5889999999999999999996431 111 00000 0000 000110000111 111 2
Q ss_pred ----HHHHHHHhCCCCeEEeccccc-cCHHHHHHHHHhhhh
Q 036633 292 ----SLAALVKKRPYSVVLFDKIEK-ANSSILNLLLKILKT 327 (550)
Q Consensus 292 ----~lt~al~~~p~~VlllDEIek-a~~~v~~~Ll~~ld~ 327 (550)
.+..++-..| .++++||.-. +++.....+++++.+
T Consensus 114 ~qrv~la~al~~~p-~vlllDEP~~~LD~~~~~~l~~~l~~ 153 (192)
T cd03232 114 RKRLTIGVELAAKP-SILFLDEPTSGLDSQAAYNIVRFLKK 153 (192)
T ss_pred hHHHHHHHHHhcCC-cEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 5566677777 7999999754 577777777777764
No 406
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.0046 Score=68.90 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++.++||+|.|||++|..|-+.+..
T Consensus 495 e~vALVGPSGsGKSTiasLL~rfY~P 520 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLRFYDP 520 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 37899999999999999999987755
No 407
>PRK06762 hypothetical protein; Provisional
Probab=96.82 E-value=0.0014 Score=60.95 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.7
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
|..++|+|+||+|||++|+.|++.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~ 28 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR 28 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457889999999999999999998843
No 408
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.82 E-value=0.0062 Score=68.60 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||+|++.|+..+..
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 56799999999999999999987754
No 409
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.82 E-value=0.0083 Score=67.19 Aligned_cols=89 Identities=17% Similarity=0.268 Sum_probs=53.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC------------------------------chhhhhh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT------------------------------ELESIKH 288 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~------------------------------~~~~~s~ 288 (550)
..+++.|+||||||+++..|...+......... .++-+...+ +..++.+
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~-~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiHr 239 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALVKQSPKQGK-LRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIHR 239 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCC-CcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhhh
Confidence 388999999999999888776655321000000 122222211 1223444
Q ss_pred HHhHHH--HHH-----HhCCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633 289 FFDSLA--ALV-----KKRPYSVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 289 liG~lt--~al-----~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
++|... ... +.-|..||++||+-..+...+..|++.+..+
T Consensus 240 lLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~~~ 286 (586)
T TIGR01447 240 LLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKALPPN 286 (586)
T ss_pred hhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhcCCC
Confidence 555110 001 1124679999999999999999999888655
No 410
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.81 E-value=0.0042 Score=65.34 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=22.0
Q ss_pred eEEEeccCCCcHHHHHHHHHHHh
Q 036633 240 LFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
++++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 78999999999999999999998
No 411
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.81 E-value=0.006 Score=63.81 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=52.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh--hhhh----------HHh---HHHHHHHhCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE--SIKH----------FFD---SLAALVKKRPY 302 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~--~~s~----------liG---~lt~al~~~p~ 302 (550)
.+++++||+|+|||+++++|...+.. .+ .++.+ |..|+.-.+ .+.. -+. .+..++|.+|
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~---~~-rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~p- 237 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPP---QE-RLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRP- 237 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCC---CC-CEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCC-
Confidence 69999999999999999999988755 22 33332 222222111 0000 001 3455777788
Q ss_pred CeEEeccccccCHHHHHHHHHhhhhc
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
..|++.|+-- ++... +++.+..|
T Consensus 238 D~IivGEiR~--~ea~~-~l~a~~tG 260 (344)
T PRK13851 238 DRILLGEMRD--DAAWA-YLSEVVSG 260 (344)
T ss_pred CeEEEEeeCc--HHHHH-HHHHHHhC
Confidence 7899999984 45555 66777777
No 412
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.80 E-value=0.0011 Score=60.66 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=21.0
Q ss_pred EEEeccCCCcHHHHHHHHHHHhc
Q 036633 241 FLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
++|+||||+|||++|+.|++.+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC
Confidence 68999999999999999999853
No 413
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.79 E-value=0.0016 Score=61.24 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=29.3
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
+|..++|.|+||+|||++|+.|++.+.. .....+.+|
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~---~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL---KYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEe
Confidence 3478999999999999999999999875 333455555
No 414
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.00092 Score=63.36 Aligned_cols=32 Identities=44% Similarity=0.699 Sum_probs=26.8
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
.+++.||||+||||+|+.||+.+ ++.++|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--------~i~hlstgd 33 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--------GLPHLDTGD 33 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--------CCcEEcHhH
Confidence 47999999999999999999995 577777433
No 415
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.79 E-value=0.01 Score=58.60 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=24.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM 277 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~ 277 (550)
..+++.||||+|||++|..++..+-. ...+.+.++.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~~ 60 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVST 60 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEeC
Confidence 68999999999999997554443322 2234555543
No 416
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.77 E-value=0.0077 Score=52.65 Aligned_cols=25 Identities=40% Similarity=0.331 Sum_probs=21.6
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.+++.||||+|||+++-.++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 5799999999999999888877764
No 417
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.77 E-value=0.0056 Score=63.43 Aligned_cols=85 Identities=24% Similarity=0.343 Sum_probs=53.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh--hhh-------hHHhHHHHHHHhCCCCeEEec
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE--SIK-------HFFDSLAALVKKRPYSVVLFD 308 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~--~~s-------~liG~lt~al~~~p~~VlllD 308 (550)
.+++++||||+|||+++++|...+.... ....++.+ |..++.-.+ .+. .+-..+..++|.+| ..|++.
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~-~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~P-D~IivG 226 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQD-PTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRP-DRILVG 226 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcC-CCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCC-CEEEEe
Confidence 6999999999999999999998752100 22233332 233332111 000 01114566778888 799999
Q ss_pred cccccCHHHHHHHHHhhhhc
Q 036633 309 KIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 309 EIeka~~~v~~~Ll~~ld~g 328 (550)
|+-. ++... +++.+..|
T Consensus 227 EiR~--~Ea~~-~l~A~~tG 243 (319)
T PRK13894 227 EVRG--PEALD-LLMAWNTG 243 (319)
T ss_pred ccCC--HHHHH-HHHHHHcC
Confidence 9984 45554 68888888
No 418
>PF13479 AAA_24: AAA domain
Probab=96.76 E-value=0.0033 Score=61.28 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=42.8
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch------------hhhhhHHhHHHHHH-HhCCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL------------ESIKHFFDSLAALV-KKRPYS 303 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~------------~~~s~liG~lt~al-~~~p~~ 303 (550)
+|..++++||||+|||++|..+-+ .+.||+..=... .+...+...+.+.. ...+|.
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~~k-----------~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~ 70 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASLPK-----------PLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYD 70 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhCCC-----------eEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCC
Confidence 346899999999999999988833 333333221100 01111111121111 246899
Q ss_pred eEEeccccccCHHHHHHHH
Q 036633 304 VVLFDKIEKANSSILNLLL 322 (550)
Q Consensus 304 VlllDEIeka~~~v~~~Ll 322 (550)
+|+||.+..+-.-+....+
T Consensus 71 tiVIDsis~~~~~~~~~~~ 89 (213)
T PF13479_consen 71 TIVIDSISWLEDMCLEYIC 89 (213)
T ss_pred EEEEECHHHHHHHHHHHHh
Confidence 9999999876544433333
No 419
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.76 E-value=0.0011 Score=58.18 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.5
Q ss_pred EEEeccCCCcHHHHHHHHHHHh
Q 036633 241 FLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l 262 (550)
+++.|+||||||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999986
No 420
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.76 E-value=0.024 Score=56.18 Aligned_cols=131 Identities=17% Similarity=0.246 Sum_probs=73.1
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh-------hhhhH-----Hh--------HHHHH
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE-------SIKHF-----FD--------SLAAL 296 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~-------~~s~l-----iG--------~lt~a 296 (550)
.|-.+++.||+|+|||++...|-..+.. .-..++-+ ++...... .+..+ +. .+.+.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~---~f~~I~l~-t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~ 87 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRH---KFDHIFLI-TPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKY 87 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcc---cCCEEEEE-ecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999988877654 22233222 22211100 00000 00 11122
Q ss_pred HH----h--CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhH
Q 036633 297 VK----K--RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRV 370 (550)
Q Consensus 297 l~----~--~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~ 370 (550)
.+ . .|..+|+||++.. ..--...+.+++-.| | .. ++-+|+++-..
T Consensus 88 ~~k~~~~k~~~~~LiIlDD~~~-~~~k~~~l~~~~~~g--R-------H~---~is~i~l~Q~~---------------- 138 (241)
T PF04665_consen 88 IKKSPQKKNNPRFLIILDDLGD-KKLKSKILRQFFNNG--R-------HY---NISIIFLSQSY---------------- 138 (241)
T ss_pred hhhhcccCCCCCeEEEEeCCCC-chhhhHHHHHHHhcc--c-------cc---ceEEEEEeeec----------------
Confidence 22 1 2356999999864 222344577777777 5 22 23345444321
Q ss_pred HHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHH
Q 036633 371 NEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW 409 (550)
Q Consensus 371 ~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~ 409 (550)
...+|.++.-++.++.|+ .+..++..|...
T Consensus 139 -----~~lp~~iR~n~~y~i~~~----~s~~dl~~i~~~ 168 (241)
T PF04665_consen 139 -----FHLPPNIRSNIDYFIIFN----NSKRDLENIYRN 168 (241)
T ss_pred -----ccCCHHHhhcceEEEEec----CcHHHHHHHHHh
Confidence 345888888887777665 577777666553
No 421
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.76 E-value=0.0075 Score=67.56 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=23.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|+..+..
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~~~ 384 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYEP 384 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC
Confidence 67799999999999999999988754
No 422
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.76 E-value=0.0059 Score=62.97 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.|.||+|+|||++.++|+..+..
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl~~p 59 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGLTHP 59 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 58899999999999999999987754
No 423
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.76 E-value=0.001 Score=61.65 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.4
Q ss_pred EEEeccCCCcHHHHHHHHHHHhcc
Q 036633 241 FLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+++.||||+|||++|+.|++.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~ 24 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGA 24 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCC
Confidence 468999999999999999998744
No 424
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.76 E-value=0.0072 Score=67.09 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|+.....
T Consensus 349 ~~~~ivG~sGsGKSTL~~ll~g~~~~ 374 (529)
T TIGR02857 349 ERVALVGPSGAGKSTLLNLLLGFVDP 374 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57899999999999999999987654
No 425
>PRK13764 ATPase; Provisional
Probab=96.75 E-value=0.0066 Score=67.71 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=47.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchhhhhh---HH---hHH-HHHHHhCCCCeEEeccc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELESIKH---FF---DSL-AALVKKRPYSVVLFDKI 310 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~~~s~---li---G~l-t~al~~~p~~VlllDEI 310 (550)
..+|++||||+|||+++++++..+.. ....+..+ |-.++.-.+.+.. +- ..+ ...++.+| .++++||+
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~---~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~lLR~rP-D~IivGEi 333 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYAD---MGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADILLLVRP-DYTIYDEM 333 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhh---CCCEEEEECCCccccCCCcceEEeeccccHHHHHHHHHhhCC-CEEEECCC
Confidence 57999999999999999999999865 33333233 1122221111111 00 122 22367778 79999999
Q ss_pred cccCHHHHHHHH
Q 036633 311 EKANSSILNLLL 322 (550)
Q Consensus 311 eka~~~v~~~Ll 322 (550)
-. .+.+..+.
T Consensus 334 Rd--~Et~~~~~ 343 (602)
T PRK13764 334 RK--TEDFKIFA 343 (602)
T ss_pred CC--HHHHHHHH
Confidence 84 44455543
No 426
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.74 E-value=0.0081 Score=59.33 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|+++|+..+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6889999999999999999997653
No 427
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.74 E-value=0.005 Score=63.76 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=52.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe-cCCCCch--hhhhh-------HHhHHHHHHHhCCCCeEEec
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD-MGNYTEL--ESIKH-------FFDSLAALVKKRPYSVVLFD 308 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id-~s~~~~~--~~~s~-------liG~lt~al~~~p~~VlllD 308 (550)
++++++||||+|||+++++|...+.... .+..++.+. -.|+.-. +.++. +-..+..++|.+| ..|++-
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~-~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~P-D~IivG 222 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASA-PEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRP-DRIIVG 222 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCC-CCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCC-CEEEEe
Confidence 5899999999999999999998874100 122333332 2222211 11110 0114456777788 799999
Q ss_pred cccccCHHHHHHHHHhhhhc
Q 036633 309 KIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 309 EIeka~~~v~~~Ll~~ld~g 328 (550)
|+-. ++... +++.+..|
T Consensus 223 EiRg--~ea~~-~l~a~~tG 239 (323)
T PRK13833 223 EVRD--GAALT-LLKAWNTG 239 (323)
T ss_pred ecCC--HHHHH-HHHHHcCC
Confidence 9974 35554 68888877
No 428
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.74 E-value=0.008 Score=69.24 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=23.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|+..+..
T Consensus 506 e~vaIvG~sGsGKSTLlklL~gl~~p 531 (710)
T TIGR03796 506 QRVALVGGSGSGKSTIAKLVAGLYQP 531 (710)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57899999999999999999987754
No 429
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.73 E-value=0.0033 Score=59.90 Aligned_cols=78 Identities=21% Similarity=0.246 Sum_probs=47.0
Q ss_pred EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh---------hhhhHHh-------------HHHHHHH
Q 036633 241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE---------SIKHFFD-------------SLAALVK 298 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~---------~~s~liG-------------~lt~al~ 298 (550)
+.++|++|+|||++++.+++.. .+..+|+..+.... .+...+| .|...+-
T Consensus 2 i~itG~~gsGKst~~~~l~~~~--------~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf 73 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKY--------HFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVF 73 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhc--------CCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHh
Confidence 6799999999999999999864 24456665553111 1222333 3333444
Q ss_pred hCCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633 299 KRPYSVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 299 ~~p~~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
..|.....+.+ -.||-+...+.+.+..-
T Consensus 74 ~~~~~~~~le~--ilhP~i~~~i~~~i~~~ 101 (188)
T TIGR00152 74 NDPEELKWLNN--LLHPLIREWMKKLLAQF 101 (188)
T ss_pred CCHHHHHHHHH--hhCHHHHHHHHHHHHHh
Confidence 44433333332 36888888887777543
No 430
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.73 E-value=0.0086 Score=68.83 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|+.....
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~g~~~p 509 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQRLYTP 509 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57899999999999999999988654
No 431
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.71 E-value=0.0088 Score=57.30 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.+.||+|+|||+|+++|+..+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQP 52 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 68899999999999999999987643
No 432
>PRK07667 uridine kinase; Provisional
Probab=96.71 E-value=0.0039 Score=59.84 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=32.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
..+.+.|+||+|||++|+.|++.+.. ...+...+++..|.
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~---~~~~~~~i~~Dd~~ 57 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ---EGIPFHIFHIDDYI 57 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEEcCccc
Confidence 68899999999999999999999865 34466667766664
No 433
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.71 E-value=0.0092 Score=58.42 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
-.+.+.||||+|||+|-..|+-....
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 47789999999999999999976544
No 434
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.71 E-value=0.0088 Score=67.07 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=23.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..++++||+|+|||++++.|+..+..
T Consensus 367 e~i~IvG~sGsGKSTLlklL~gl~~p 392 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC
Confidence 57899999999999999999988754
No 435
>PRK14531 adenylate kinase; Provisional
Probab=96.70 E-value=0.0015 Score=61.99 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=27.2
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
.++++||||+|||++++.||+.+. +..++++++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g--------~~~is~gd~ 36 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG--------LRHLSTGDL 36 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CCeEecccH
Confidence 689999999999999999999873 455666554
No 436
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.70 E-value=0.013 Score=64.55 Aligned_cols=51 Identities=37% Similarity=0.526 Sum_probs=35.2
Q ss_pred CCCCeEEeccccc--cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633 300 RPYSVVLFDKIEK--ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM 362 (550)
Q Consensus 300 ~p~~VlllDEIek--a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~ 362 (550)
..|+||+|||+|. +|.+++=.||+-+-.. + .|+ -+|||++.++++.....+
T Consensus 162 skYsvIIlDEAHERsl~TDiLlGlLKki~~~--R--------~~L--klIimSATlda~kfS~yF 214 (674)
T KOG0922|consen 162 SKYSVIILDEAHERSLHTDILLGLLKKILKK--R--------PDL--KLIIMSATLDAEKFSEYF 214 (674)
T ss_pred ccccEEEEechhhhhhHHHHHHHHHHHHHhc--C--------CCc--eEEEEeeeecHHHHHHHh
Confidence 5689999999986 4567766666555444 3 123 367888888888877655
No 437
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.69 E-value=0.022 Score=58.28 Aligned_cols=164 Identities=19% Similarity=0.234 Sum_probs=87.8
Q ss_pred ccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHH-HHHHHhccCCCCCCce--eEEecCCCCchh
Q 036633 208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAK-AIANELYDNNDNDNHL--IHFDMGNYTELE 284 (550)
Q Consensus 208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk-~la~~l~~~~~~~~~l--i~id~s~~~~~~ 284 (550)
++|..+--+.+...+++.. -.| ...+++++||-|+|||.+.. .|+. ... ..+++ +++|..-..+..
T Consensus 26 l~g~~~~~~~l~~~lkqt~--~~g-----EsnsviiigprgsgkT~li~~~Ls~-~q~---~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTI--LHG-----ESNSVIIIGPRGSGKTILIDTRLSD-IQE---NGENFLLVRLNGELQTDKI 94 (408)
T ss_pred eeehHHHHHHHHHHHHHHH--Hhc-----CCCceEEEccCCCCceEeeHHHHhh-HHh---cCCeEEEEEECccchhhHH
Confidence 3444444455555555441 001 11699999999999999654 3444 111 22244 445533222222
Q ss_pred hhhhH--------------Hh-------HHHHHHHh---CCCC-eE-Eeccccc-cCHHHHHHHHHhhhhccccccccCC
Q 036633 285 SIKHF--------------FD-------SLAALVKK---RPYS-VV-LFDKIEK-ANSSILNLLLKILKTDFNRKATRGI 337 (550)
Q Consensus 285 ~~s~l--------------iG-------~lt~al~~---~p~~-Vl-llDEIek-a~~~v~~~Ll~~ld~g~~~~l~d~g 337 (550)
++..+ +| .+.+++.. .+.+ || ++||||- +++.-|..|+.++|-.+-.
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~------ 168 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA------ 168 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc------
Confidence 21111 11 22333332 2333 44 5789986 5677888999999865111
Q ss_pred eEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633 338 AAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 338 ~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l 411 (550)
-..-|||-+||..+.-. .+.+.++ +|+..-+.|- +|+++-++...+.+..+
T Consensus 169 ---r~Piciig~Ttrld~lE-----------~LEKRVK--------SRFshr~I~m-~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 169 ---RAPICIIGVTTRLDILE-----------LLEKRVK--------SRFSHRVIFM-LPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ---CCCeEEEEeeccccHHH-----------HHHHHHH--------hhcccceeec-cCCCChHHHHHHHHHHh
Confidence 11347788888775422 2223333 5555443343 34777888998888777
No 438
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.68 E-value=0.0073 Score=62.12 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=23.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.|+||+|+|||++.++|+..+..
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~~p 45 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLLRP 45 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 58899999999999999999987643
No 439
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.67 E-value=0.0078 Score=61.91 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=23.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.+.||+|+|||++.++|+..+..
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl~~~ 54 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGYLPP 54 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 68999999999999999999987543
No 440
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.67 E-value=0.0052 Score=59.58 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+..+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5889999999999999999998764
No 441
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.67 E-value=0.015 Score=57.34 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=22.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|+++|+..+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 6899999999999999999997764
No 442
>PRK06217 hypothetical protein; Validated
Probab=96.65 E-value=0.0016 Score=61.79 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.8
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.+++.|+||+|||++|+.|++.+.-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4899999999999999999998855
No 443
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.65 E-value=0.0035 Score=61.76 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=32.3
Q ss_pred CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE-EecCCCCc
Q 036633 236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH-FDMGNYTE 282 (550)
Q Consensus 236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~-id~s~~~~ 282 (550)
.+|..+.|.||+|+|||++++.|+..+.. ....... +.+..|..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~---~~g~~~v~i~~D~~~~ 75 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ---DGELPAIQVPMDGFHL 75 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh---ccCCceEEEecccccC
Confidence 35588999999999999999999999865 3333322 55555543
No 444
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.65 E-value=0.011 Score=56.92 Aligned_cols=25 Identities=44% Similarity=0.586 Sum_probs=22.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||++.++|+....
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6889999999999999999998764
No 445
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.013 Score=57.69 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||++.++|+..+.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 6889999999999999999998764
No 446
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.65 E-value=0.0041 Score=57.66 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
-.+++.||||+||+++-|++|.....
T Consensus 30 e~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccCC
Confidence 57899999999999999999987754
No 447
>PRK14530 adenylate kinase; Provisional
Probab=96.64 E-value=0.0017 Score=63.39 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=22.1
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
.++|.||||+|||++|+.||+.+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 688899999999999999999873
No 448
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.63 E-value=0.009 Score=58.70 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=23.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|+++|+..+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999998764
No 449
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.63 E-value=0.0081 Score=59.93 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=26.3
Q ss_pred EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633 241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM 277 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~ 277 (550)
++|+|+||+|||++|+.|++.+.. ...+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~---~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE---KNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---cCCceEEEcc
Confidence 689999999999999999999854 2234555543
No 450
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.62 E-value=0.0017 Score=58.66 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=22.4
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
++++.||||+|||++|+.||+.+.-
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~ 25 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGL 25 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3689999999999999999998854
No 451
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.0099 Score=58.86 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=23.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+++.||+|+|||++++.++-.+..
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~GLl~p 56 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNGLLKP 56 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcCcCcC
Confidence 48899999999999999999988865
No 452
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.62 E-value=0.0018 Score=51.28 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.7
Q ss_pred EEEeccCCCcHHHHHHHHHHHh
Q 036633 241 FLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l 262 (550)
+.+.|+||+|||++++.|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 453
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.62 E-value=0.0014 Score=62.06 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=22.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+++.||||+|||++|+.|++.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 378899999999999999999886
No 454
>PRK13948 shikimate kinase; Provisional
Probab=96.61 E-value=0.0023 Score=60.83 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=29.6
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
.|.+++|.|++|+|||++++.||+.+.. +|+..|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~------~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML------HFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC------CEEECC
Confidence 3489999999999999999999999876 777555
No 455
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.61 E-value=0.0032 Score=60.96 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=31.3
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
+|..+.+.||||+|||++++.|++.+.+ ..+..+++..|.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~-----~~~~~i~~D~~~ 44 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGD-----ESIAVIPQDSYY 44 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCC-----CceEEEeCCccc
Confidence 5579999999999999999999998843 145556665553
No 456
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.61 E-value=0.0052 Score=55.26 Aligned_cols=42 Identities=29% Similarity=0.403 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 213 DAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 213 ~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+...++...+... + +| .+++|.|+.|+|||++++.+++.+..
T Consensus 6 ~~t~~l~~~l~~~------l----~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 6 KAMDKFGKAFAKP------L----DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHh------C----CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3445556666544 1 33 68999999999999999999999864
No 457
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.60 E-value=0.011 Score=67.76 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|+..+..
T Consensus 480 e~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 57899999999999999999988754
No 458
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.60 E-value=0.011 Score=57.58 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+..+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6889999999999999999998764
No 459
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.60 E-value=0.011 Score=55.86 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=23.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.+.||+|+|||+|.++|+..+..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 68899999999999999999987653
No 460
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.60 E-value=0.021 Score=55.89 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+++++|+..+.
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 6889999999999999999998764
No 461
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.0068 Score=58.81 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|+++|+..+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999999999999999998764
No 462
>PRK13949 shikimate kinase; Provisional
Probab=96.59 E-value=0.0019 Score=60.72 Aligned_cols=31 Identities=35% Similarity=0.449 Sum_probs=26.3
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
.++++||||+|||++++.||+.+.- +++..|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~------~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL------SFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC------Ceeccc
Confidence 5889999999999999999999855 555555
No 463
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.0089 Score=68.92 Aligned_cols=60 Identities=35% Similarity=0.407 Sum_probs=35.1
Q ss_pred HHHHHHHh----CCCCeEEeccccccCH--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633 292 SLAALVKK----RPYSVVLFDKIEKANS--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM 362 (550)
Q Consensus 292 ~lt~al~~----~p~~VlllDEIeka~~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~ 362 (550)
.|+..+.. ..|++|+|||+|.=+- ++.=.|+.-+-.. + . -|++ +|||+.+++.+......
T Consensus 149 iLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~--r--r-----~DLK--iIimSATld~~rfs~~f 214 (845)
T COG1643 149 ILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLAR--R--R-----DDLK--LIIMSATLDAERFSAYF 214 (845)
T ss_pred HHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhh--c--C-----CCce--EEEEecccCHHHHHHHc
Confidence 55555553 5589999999986543 3333333222222 1 1 1233 68888899888776543
No 464
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.59 E-value=0.0023 Score=63.22 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=29.6
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
.|..+++.||||+|||++|+.||+.+ .+..++++++-
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~--------g~~~is~gdll 41 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKE--------NLKHINMGNIL 41 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh--------CCcEEECChHH
Confidence 45568999999999999999999987 35666666653
No 465
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.59 E-value=0.0026 Score=59.80 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=30.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
.++.|.|+||+|||++|+.|+..+.. ....+..+|...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~---~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLRE---AGYPVEVLDGDA 42 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEcCcc
Confidence 68899999999999999999999865 333566666543
No 466
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.59 E-value=0.012 Score=56.76 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=23.0
Q ss_pred CC-eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 237 QL-GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
.| ..+.+.||+|+|||++.++|+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44 688999999999999999999873
No 467
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.58 E-value=0.02 Score=54.65 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=23.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+.++++|++|.|||+.|-.+|-..-+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g 48 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVG 48 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHH
Confidence 79999999999999999888876655
No 468
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.58 E-value=0.011 Score=66.21 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|+..+..
T Consensus 342 ~~~~ivG~sGsGKSTLl~ll~g~~~p 367 (569)
T PRK10789 342 QMLGICGPTGSGKSTLLSLIQRHFDV 367 (569)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 57889999999999999999987643
No 469
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.58 E-value=0.011 Score=56.56 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=52.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh--ccCCCCCCceeEE-------------------ecCCCCchhhhh----------
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL--YDNNDNDNHLIHF-------------------DMGNYTELESIK---------- 287 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l--~~~~~~~~~li~i-------------------d~s~~~~~~~~s---------- 287 (550)
..+.+.||+|+|||+|.++|+..+ .. .... +.+ +..-+.. .++.
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~-i~~~g~~~~~~~~~~~i~~~~q~~~~~~~-~t~~~~i~~~~~~~ 110 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGE-VLINGRPLDKRSFRKIIGYVPQDDILHPT-LTVRETLMFAAKLR 110 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCC---CceE-EEECCEeCchHhhhheEEEccCcccCCCC-CcHHHHHHHHHHhc
Confidence 688999999999999999999877 32 1111 111 1011110 0110
Q ss_pred hHH-h-----HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhhc
Q 036633 288 HFF-D-----SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKTD 328 (550)
Q Consensus 288 ~li-G-----~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~g 328 (550)
.|- | .+..++-..| .++++||.- -+++.....+++++..-
T Consensus 111 ~LS~G~~qrv~laral~~~p-~illlDEP~~~LD~~~~~~l~~~l~~~ 157 (194)
T cd03213 111 GLSGGERKRVSIALELVSNP-SLLFLDEPTSGLDSSSALQVMSLLRRL 157 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 111 2 5566666677 799999975 46777777888777643
No 470
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.57 E-value=0.0028 Score=66.05 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=73.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL 318 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~ 318 (550)
..++|+|||+||||..+-.|-+.+.| .++.+ ....+- -.+.-|+++ .|-+||++-...-+-.
T Consensus 263 nClvi~GPPdTGKS~F~~SLi~Fl~G------kViSf-----~Ns~Sh-FWLqPL~d~------Ki~llDDAT~~cW~Y~ 324 (432)
T PF00519_consen 263 NCLVIYGPPDTGKSMFCMSLIKFLKG------KVISF-----VNSKSH-FWLQPLADA------KIALLDDATYPCWDYI 324 (432)
T ss_dssp SEEEEESSCCCSHHHHHHHHHHHHTS------EEE-G-----GGTTSC-GGGGGGCT-------SSEEEEEE-HHHHHHH
T ss_pred cEEEEECCCCCchhHHHHHHHHHhCC------EEEEe-----cCCCCc-ccccchhcC------cEEEEcCCcccHHHHH
Confidence 79999999999999999999999988 55553 111110 011122222 5899999875555555
Q ss_pred HHHH-HhhhhccccccccC---CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecC
Q 036633 319 NLLL-KILKTDFNRKATRG---IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDL 394 (550)
Q Consensus 319 ~~Ll-~~ld~g~~~~l~d~---g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~ 394 (550)
+.-+ ..||.. . +.-. ...+-.+---++.|||.+.... ..+ .-|.+|+ .++.|.-
T Consensus 325 D~ylRNaLDGN--~-vsiD~KHkap~Qik~PPLlITsN~dv~~~-----------------~~~-~YLhSRi-~~f~F~n 382 (432)
T PF00519_consen 325 DTYLRNALDGN--P-VSIDCKHKAPVQIKCPPLLITSNIDVKKD-----------------DRW-KYLHSRI-TCFEFPN 382 (432)
T ss_dssp HHHTHHHHCTS--E-EEEEESSSEEEEEE---EEEEESS-TTTS-----------------CCC-HHHCTTE-EEEE--S
T ss_pred HHHHHhccCCC--e-eeeeccCCCceEeecCceEEecCCCCCcc-----------------hhh-hhhhheE-EEEEcCC
Confidence 5433 344433 2 2211 2333344455788999864221 122 2267999 7999987
Q ss_pred CCCCCHH--HHHHHHHHHHHHHHHHh
Q 036633 395 AVPLLDT--TRLLLREWACEETKRRN 418 (550)
Q Consensus 395 ~~pL~~e--~i~~I~~~~l~~~~~~l 418 (550)
+-|++++ -...|-..--+.+-+++
T Consensus 383 ~~P~d~~G~P~y~ltd~~WksFF~rl 408 (432)
T PF00519_consen 383 PFPLDENGNPVYELTDANWKSFFRRL 408 (432)
T ss_dssp -S-BSTTSSBSS---HHHHHHHHHHH
T ss_pred ccccCCCCCeeEEeccChHHHHHHHH
Confidence 7777752 23333333333344443
No 471
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.57 E-value=0.0031 Score=60.69 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=31.8
Q ss_pred cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633 235 RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM 277 (550)
Q Consensus 235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~ 277 (550)
+.+|..+.|+|+||+|||++|+.|+..++. .....+.+|.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~---~~~~~~~ld~ 60 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHE---LGVSTYLLDG 60 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh---CCCCEEEEcC
Confidence 346689999999999999999999999876 3334566654
No 472
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.57 E-value=0.017 Score=58.41 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+..+.
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6889999999999999999998764
No 473
>PRK01184 hypothetical protein; Provisional
Probab=96.56 E-value=0.065 Score=50.63 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=18.7
Q ss_pred eEEEeccCCCcHHHHHHHHHHHh
Q 036633 240 LFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
.++++||||+|||++|+ +++.+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHc
Confidence 67899999999999998 55554
No 474
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.56 E-value=0.022 Score=55.05 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+..+.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 5889999999999999999998754
No 475
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.56 E-value=0.012 Score=56.73 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+..+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6889999999999999999997654
No 476
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.55 E-value=0.012 Score=67.69 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=23.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|+..+..
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl~~p 526 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGFFQA 526 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC
Confidence 57899999999999999999987644
No 477
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.54 E-value=0.0037 Score=61.27 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=46.0
Q ss_pred EEEeccCCCcHHHHHHHHHHHhccCCCCCCc-eeEEecCCCCchhhhhhHHhHHHHHHH-hCCCCeEEeccccccCHHHH
Q 036633 241 FLFAGPNCSGKAELAKAIANELYDNNDNDNH-LIHFDMGNYTELESIKHFFDSLAALVK-KRPYSVVLFDKIEKANSSIL 318 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~-li~id~s~~~~~~~~s~liG~lt~al~-~~p~~VlllDEIeka~~~v~ 318 (550)
+++.|+||+|||++.+.+.... ..-....+ ..-+..............+..+..+.. .+++.+++|||+..+|+..+
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~~~~~g~l 79 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR-LVVTVISPTIELYTEWLPDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQLLPPGYL 79 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc-cccccccccceeccccccccCCccccEEeEhhhcccccCcCCEEEEeccccCChHHH
Confidence 3689999999999999988872 00000001 111111100000000011111122211 13578999999999999888
Q ss_pred HHHHHhhhhc
Q 036633 319 NLLLKILKTD 328 (550)
Q Consensus 319 ~~Ll~~ld~g 328 (550)
..++......
T Consensus 80 ~~l~~~~~~~ 89 (234)
T PF01443_consen 80 LLLLSLSPAK 89 (234)
T ss_pred HHHHhhccCc
Confidence 8866555433
No 478
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.54 E-value=0.53 Score=55.41 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=38.3
Q ss_pred cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
+|++..++++.+.+..- .++++-++|--|+|||++|+.+-+...
T Consensus 161 VG~e~~~~kl~~~L~~d-----------~~~iv~i~GMGGvGKTTL~~qi~N~~~ 204 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMED-----------DVGIVGIYGMGGVGKTTLARQIFNKFD 204 (889)
T ss_pred ccHHHHHHHHHHHhccC-----------CCCEEEEECCCcccHHHHHHHHhcccc
Confidence 99999999998888765 227999999999999999999987764
No 479
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.54 E-value=0.01 Score=61.37 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=46.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-------------------HHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-------------------SLAALVKK 299 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-------------------~lt~al~~ 299 (550)
.+.+++||||+|||+||-.++...-. ...+.+.||+.+-.+... ..-+| .+...++.
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~~~-a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPVY-ARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHHHH-HHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 58899999999999999887666544 445777787765433322 11122 22223444
Q ss_pred CCCCeEEeccccccC
Q 036633 300 RPYSVVLFDKIEKAN 314 (550)
Q Consensus 300 ~p~~VlllDEIeka~ 314 (550)
....+|++|-+..+.
T Consensus 132 ~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 132 GAVDIIVVDSVAALV 146 (321)
T ss_pred cCCcEEEEcchhhhc
Confidence 455799999887543
No 480
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0087 Score=57.74 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=23.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|++.|+..+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCC
Confidence 6889999999999999999998865
No 481
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.54 E-value=0.0073 Score=56.80 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=27.1
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
.+++.||||+|||++|..++..+.. +++.+.-+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~------~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL------QVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC------CcEeCcCCC
Confidence 5799999999999999999987644 566655443
No 482
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.54 E-value=0.012 Score=66.11 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=23.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|+..+..
T Consensus 362 ~~~~ivG~sGsGKSTL~~ll~g~~~~ 387 (585)
T TIGR01192 362 QTVAIVGPTGAGKTTLINLLQRVYDP 387 (585)
T ss_pred CEEEEECCCCCCHHHHHHHHccCCCC
Confidence 67899999999999999999987654
No 483
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.53 E-value=0.0072 Score=60.42 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
...+|.||+|+|||++++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 68899999999999999999988754
No 484
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.53 E-value=0.0021 Score=61.08 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=26.2
Q ss_pred EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
++++||||+|||++|+.||+.+ .+..++++++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~--------~~~~i~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY--------GLPHISTGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc--------CCeEEECcHH
Confidence 6899999999999999999986 3556666554
No 485
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.53 E-value=0.038 Score=55.84 Aligned_cols=84 Identities=13% Similarity=0.241 Sum_probs=54.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh----------------HHHHHH---Hh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD----------------SLAALV---KK 299 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG----------------~lt~al---~~ 299 (550)
..++|+||+|+|||++++.|+..+.. .......+++..+. ..++..+.. .+.+++ .+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~D~~r-i~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSR-IGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEecCCCC-HHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 69999999999999999999988754 33345555554443 112222211 333333 22
Q ss_pred -CCCCeEEeccccccC--HHHHHHHHHhhh
Q 036633 300 -RPYSVVLFDKIEKAN--SSILNLLLKILK 326 (550)
Q Consensus 300 -~p~~VlllDEIeka~--~~v~~~Ll~~ld 326 (550)
..+.+|++|-....+ ...+..|.+++.
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 467899999999886 455666666664
No 486
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.50 E-value=0.01 Score=57.43 Aligned_cols=25 Identities=44% Similarity=0.519 Sum_probs=19.7
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.+.+.||+|||||.+|-+.|-.+..
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~ 45 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVK 45 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH
Confidence 7889999999999999998876644
No 487
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.50 E-value=0.014 Score=56.39 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=23.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.+.||+|+|||+|.++|+..+..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 58899999999999999999987653
No 488
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.49 E-value=0.016 Score=55.13 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=42.0
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc--CC-----------CCCCceeEEecCCCCchhhhhhHHh---HHHHHHHh-CCC
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD--NN-----------DNDNHLIHFDMGNYTELESIKHFFD---SLAALVKK-RPY 302 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~--~~-----------~~~~~li~id~s~~~~~~~~s~liG---~lt~al~~-~p~ 302 (550)
.++++||.|.|||++.+.++-..+- .| .-+.-+.+++..+.... ..+.+-+ ++..++.. ...
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~-~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQ-GLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhc-cccHHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999843321 11 00111222333222211 1222322 55556655 233
Q ss_pred CeEEecccccc-CHH
Q 036633 303 SVVLFDKIEKA-NSS 316 (550)
Q Consensus 303 ~VlllDEIeka-~~~ 316 (550)
+++++||+.+. ++.
T Consensus 80 ~llllDEp~~g~d~~ 94 (185)
T smart00534 80 SLVLLDELGRGTSTY 94 (185)
T ss_pred eEEEEecCCCCCCHH
Confidence 79999999764 443
No 489
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.49 E-value=0.0042 Score=60.93 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
.++|+.||||+|||.+|..++...
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~ 43 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNG 43 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHh
Confidence 799999999999999998766433
No 490
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.49 E-value=0.0097 Score=58.62 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|+++|+..+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6889999999999999999998764
No 491
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.48 E-value=0.0052 Score=64.74 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.-.+++||+|||||+||+.|++.+..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 45688899999999999999998754
No 492
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.47 E-value=0.01 Score=51.59 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=51.4
Q ss_pred EEEeccCCCcHHHHHHHHHHHhc-cC----C-----------CCCCceeEEecCCCCchhhhhh---HHhHHHHHHHhCC
Q 036633 241 FLFAGPNCSGKAELAKAIANELY-DN----N-----------DNDNHLIHFDMGNYTELESIKH---FFDSLAALVKKRP 301 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l~-~~----~-----------~~~~~li~id~s~~~~~~~~s~---liG~lt~al~~~p 301 (550)
++|.|+||+|||++.++|...-. .. + .....+.-+|...+.+...... .+..+.+.+....
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d 81 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSD 81 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTES
T ss_pred EEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCC
Confidence 68999999999999999996311 10 0 1223456678888765433322 2223444443444
Q ss_pred CCeEEeccccccCHHHHHHHHHhhhhc
Q 036633 302 YSVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 302 ~~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
.-++++| .+....+....+++.++.+
T Consensus 82 ~ii~vv~-~~~~~~~~~~~~~~~l~~~ 107 (116)
T PF01926_consen 82 LIIYVVD-ASNPITEDDKNILRELKNK 107 (116)
T ss_dssp EEEEEEE-TTSHSHHHHHHHHHHHHTT
T ss_pred EEEEEEE-CCCCCCHHHHHHHHHHhcC
Confidence 3456678 7774445555666666543
No 493
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.47 E-value=0.004 Score=58.11 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=34.2
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
+|.++.|+|.||+|||++|.++.+.|+. .......+|....
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~---~G~~~y~LDGDnv 62 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFA---KGYHVYLLDGDNV 62 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHH---cCCeEEEecChhH
Confidence 5589999999999999999999999998 5556666765443
No 494
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.02 Score=54.73 Aligned_cols=87 Identities=18% Similarity=0.136 Sum_probs=64.4
Q ss_pred CeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhh
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSL 382 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~l 382 (550)
+.++++++++++...+|.||+.+|+. . .+++||+.|+.. ..+.|-+
T Consensus 56 ~k~iI~~a~~l~~~A~NaLLK~LEEP--p-----------~~~~fiL~t~~~---------------------~~llpTI 101 (206)
T PRK08485 56 EKIIVIAAPSYGIEAQNALLKILEEP--P-----------KNICFIIVAKSK---------------------NLLLPTI 101 (206)
T ss_pred cEEEEEchHhhCHHHHHHHHHHhcCC--C-----------CCeEEEEEeCCh---------------------HhCchHH
Confidence 45678899999999999999999998 6 678888877653 3567889
Q ss_pred hhhccce-------------eEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHh
Q 036633 383 LKLLDKL-------------VVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIAS 438 (550)
Q Consensus 383 l~Rid~i-------------i~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~ 438 (550)
++|| .+ +.|. +++.+++...+.. +.+ .++ ...+++.+.|+.
T Consensus 102 ~SRc-~~~~~~~~~~~~~l~l~l~---~l~~~~i~~~L~~-~~k-------e~~---~~~~ea~~lIa~ 155 (206)
T PRK08485 102 RSRL-IIEKRKQKKPVKPLDLDLK---KLDLKDIYEFLKE-LEK-------ENK---LSKEELKELIES 155 (206)
T ss_pred Hhhh-eeccccccccccccccccC---CCCHHHHHHHHHH-HHH-------ccc---ccHHHHHHHHHH
Confidence 9999 44 5677 9999998877766 321 222 445666666655
No 495
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.46 E-value=0.027 Score=54.22 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=23.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.+.||+|+|||++.++|+.....
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 68899999999999999999987644
No 496
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.45 E-value=0.012 Score=58.85 Aligned_cols=84 Identities=19% Similarity=0.281 Sum_probs=53.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec---CCCCchh---hhhhH---Hh------------------
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM---GNYTELE---SIKHF---FD------------------ 291 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~---s~~~~~~---~~s~l---iG------------------ 291 (550)
-++-++|+||+|||++++.|...... +... +.++. ..+.... .+..+ +|
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~p---t~G~-i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEP---TSGE-ILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCC---CCce-EEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 58899999999999999999988764 3322 33332 2221110 11111 12
Q ss_pred ---HHHHHHHhCCCCeEEecccccc-CHHHHHHHHHhhhh
Q 036633 292 ---SLAALVKKRPYSVVLFDKIEKA-NSSILNLLLKILKT 327 (550)
Q Consensus 292 ---~lt~al~~~p~~VlllDEIeka-~~~v~~~Ll~~ld~ 327 (550)
.++.++.-+| .+++.||.-.+ +-++|...+.+|.+
T Consensus 116 QRi~IARALal~P-~liV~DEpvSaLDvSiqaqIlnLL~d 154 (268)
T COG4608 116 QRIGIARALALNP-KLIVADEPVSALDVSVQAQILNLLKD 154 (268)
T ss_pred hhHHHHHHHhhCC-cEEEecCchhhcchhHHHHHHHHHHH
Confidence 4556666677 79999998654 56677766666643
No 497
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.44 E-value=0.0023 Score=59.88 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=27.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
.++.|+|++|+|||++.+.||+.|+- +|+-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~------~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNL------PFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCC------Ccccch
Confidence 47899999999999999999999976 665544
No 498
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.44 E-value=0.0032 Score=59.27 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=26.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
..++|+||+|+|||++++.||+.+.. +++..|
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~------~~vd~D 36 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNM------EFYDSD 36 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCC------cEEECC
Confidence 47999999999999999999998755 555554
No 499
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.44 E-value=0.031 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.132 Sum_probs=18.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
..+++.||+|+|||+.+...+-
T Consensus 15 ~~~li~aptGsGKT~~~~~~~l 36 (169)
T PF00270_consen 15 KNVLISAPTGSGKTLAYILPAL 36 (169)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCccHHHHHHHHH
Confidence 3799999999999998875443
No 500
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.44 E-value=0.0028 Score=61.47 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=25.6
Q ss_pred CCCcCCCeeEEEeccCCCcHHHHHHHHHHH
Q 036633 232 LSSRRQLGLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 232 l~~~~~p~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
+.+|.+|..++|+||||+|||++++.|.+.
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 456667788889999999999999999865
Done!