Query 036633
Match_columns 550
No_of_seqs 380 out of 3609
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 06:02:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 100.0 1.9E-58 6.4E-63 533.6 39.9 454 5-480 335-840 (854)
2 3pxi_A Negative regulator of g 100.0 1.1E-54 3.8E-59 496.5 28.4 410 5-481 328-746 (758)
3 1r6b_X CLPA protein; AAA+, N-t 100.0 6.9E-50 2.4E-54 457.0 30.2 363 5-480 352-736 (758)
4 4fcw_A Chaperone protein CLPB; 100.0 3.2E-36 1.1E-40 307.3 23.8 276 192-481 3-300 (311)
5 3hws_A ATP-dependent CLP prote 100.0 1.5E-29 5.2E-34 264.5 11.8 276 197-486 6-346 (363)
6 1um8_A ATP-dependent CLP prote 99.9 9.8E-27 3.3E-31 244.3 19.6 274 196-485 11-361 (376)
7 1ojl_A Transcriptional regulat 99.9 1.9E-25 6.6E-30 228.0 17.9 280 206-541 2-296 (304)
8 3m6a_A ATP-dependent protease 99.9 2.1E-24 7.3E-29 237.0 20.6 292 151-486 26-338 (543)
9 1ofh_A ATP-dependent HSL prote 99.9 1E-24 3.5E-29 221.4 16.2 256 198-486 7-296 (310)
10 2bjv_A PSP operon transcriptio 99.9 1.2E-23 4.2E-28 209.8 20.4 213 206-457 6-235 (265)
11 1ny5_A Transcriptional regulat 99.9 1.3E-23 4.4E-28 221.6 18.2 215 206-457 137-365 (387)
12 3dzd_A Transcriptional regulat 99.9 1.8E-23 6.1E-28 219.0 17.6 214 206-457 129-356 (368)
13 1g41_A Heat shock protein HSLU 99.9 6.6E-22 2.2E-26 210.1 18.6 227 198-457 7-402 (444)
14 3syl_A Protein CBBX; photosynt 99.9 6.8E-22 2.3E-26 201.1 14.4 218 196-457 21-257 (309)
15 3pvs_A Replication-associated 99.8 2E-20 7E-25 200.4 15.3 230 206-503 26-258 (447)
16 3pfi_A Holliday junction ATP-d 99.8 3.3E-19 1.1E-23 183.7 19.1 193 206-457 29-229 (338)
17 1hqc_A RUVB; extended AAA-ATPa 99.8 1.9E-18 6.6E-23 176.5 19.6 196 206-457 12-213 (324)
18 3u61_B DNA polymerase accessor 99.8 3.4E-18 1.2E-22 175.2 18.8 187 206-457 26-218 (324)
19 3eie_A Vacuolar protein sortin 99.8 8.5E-18 2.9E-22 172.6 19.4 199 206-457 18-230 (322)
20 3n70_A Transport activator; si 99.8 2.5E-18 8.6E-23 155.9 12.0 144 206-399 1-145 (145)
21 4b4t_J 26S protease regulatory 99.8 8.4E-18 2.9E-22 175.9 15.9 194 205-457 147-364 (405)
22 1xwi_A SKD1 protein; VPS4B, AA 99.8 6E-17 2E-21 166.4 21.9 200 206-457 12-225 (322)
23 3t15_A Ribulose bisphosphate c 99.7 9.3E-18 3.2E-22 170.2 14.6 169 207-411 8-198 (293)
24 2chg_A Replication factor C sm 99.7 3.8E-17 1.3E-21 156.0 18.1 185 206-457 17-206 (226)
25 2qp9_X Vacuolar protein sortin 99.7 2E-17 6.8E-22 172.3 17.0 199 206-457 51-263 (355)
26 2zan_A Vacuolar protein sortin 99.7 7E-17 2.4E-21 173.1 19.2 200 206-457 134-347 (444)
27 4b4t_I 26S protease regulatory 99.7 2.7E-17 9.1E-22 172.7 14.6 192 206-457 182-398 (437)
28 3vfd_A Spastin; ATPase, microt 99.7 9E-17 3.1E-21 169.2 18.8 200 206-457 115-328 (389)
29 4b4t_H 26S protease regulatory 99.7 3.8E-17 1.3E-21 173.0 15.2 193 206-457 209-425 (467)
30 1g8p_A Magnesium-chelatase 38 99.7 7.2E-17 2.4E-21 166.5 17.0 212 206-457 24-297 (350)
31 4b4t_L 26S protease subunit RP 99.7 6.1E-17 2.1E-21 171.8 16.7 193 206-457 181-397 (437)
32 4b4t_M 26S protease regulatory 99.7 4.8E-17 1.7E-21 172.4 15.5 194 205-457 180-397 (434)
33 1sxj_D Activator 1 41 kDa subu 99.7 8.3E-17 2.8E-21 166.1 16.9 190 205-457 36-237 (353)
34 1iqp_A RFCS; clamp loader, ext 99.7 8.4E-17 2.9E-21 164.0 16.7 185 206-457 25-214 (327)
35 2chq_A Replication factor C sm 99.7 4.7E-17 1.6E-21 165.3 14.3 188 206-457 17-206 (319)
36 3uk6_A RUVB-like 2; hexameric 99.7 2.5E-16 8.5E-21 163.8 20.1 202 205-457 43-305 (368)
37 3b9p_A CG5977-PA, isoform A; A 99.7 2.8E-16 9.5E-21 158.8 19.3 198 206-457 21-235 (297)
38 4b4t_K 26S protease regulatory 99.7 6.8E-17 2.3E-21 171.1 14.5 195 205-457 171-389 (428)
39 3d8b_A Fidgetin-like protein 1 99.7 2.7E-16 9.3E-21 163.8 18.1 200 206-457 84-297 (357)
40 2r44_A Uncharacterized protein 99.7 1.4E-16 4.8E-21 163.7 15.3 200 195-439 16-238 (331)
41 2qz4_A Paraplegin; AAA+, SPG7, 99.7 1.2E-15 3.9E-20 150.9 19.9 197 206-457 6-224 (262)
42 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 2.7E-16 9.1E-21 170.2 16.5 223 194-467 10-270 (500)
43 1njg_A DNA polymerase III subu 99.7 4.1E-16 1.4E-20 150.5 15.7 183 206-457 23-230 (250)
44 3cf0_A Transitional endoplasmi 99.7 4.3E-16 1.5E-20 158.4 16.5 188 206-457 15-231 (301)
45 3h4m_A Proteasome-activating n 99.7 8.5E-16 2.9E-20 154.2 17.3 197 206-457 17-233 (285)
46 1sxj_B Activator 1 37 kDa subu 99.7 5E-16 1.7E-20 157.9 15.1 188 206-457 21-211 (323)
47 1d2n_A N-ethylmaleimide-sensit 99.7 1.3E-16 4.5E-21 159.5 10.3 199 200-457 27-244 (272)
48 1jr3_A DNA polymerase III subu 99.7 1.2E-15 4E-20 158.7 17.1 186 206-457 16-223 (373)
49 1sxj_C Activator 1 40 kDa subu 99.7 1.4E-15 4.9E-20 157.0 17.3 186 206-457 25-214 (340)
50 3co5_A Putative two-component 99.7 4E-17 1.4E-21 147.7 4.7 140 206-399 4-143 (143)
51 1lv7_A FTSH; alpha/beta domain 99.6 4.6E-15 1.6E-19 146.9 17.4 195 206-457 12-227 (257)
52 3hu3_A Transitional endoplasmi 99.6 1.5E-15 5.1E-20 164.3 14.2 193 206-457 204-417 (489)
53 1l8q_A Chromosomal replication 99.6 6.4E-15 2.2E-19 150.9 17.3 167 238-457 37-210 (324)
54 3f9v_A Minichromosome maintena 99.6 9.6E-17 3.3E-21 177.8 3.7 208 167-411 266-490 (595)
55 2ce7_A Cell division protein F 99.6 9.2E-15 3.2E-19 157.1 18.5 192 206-457 16-231 (476)
56 3k1j_A LON protease, ATP-depen 99.6 1.1E-15 3.7E-20 170.1 11.6 210 205-457 40-350 (604)
57 1sxj_E Activator 1 40 kDa subu 99.6 3.9E-15 1.3E-19 154.0 14.5 190 206-457 14-239 (354)
58 2c9o_A RUVB-like 1; hexameric 99.6 2E-14 6.8E-19 154.5 18.4 115 303-457 297-412 (456)
59 2v1u_A Cell division control p 99.6 1.2E-14 4.2E-19 151.1 15.6 209 204-457 17-251 (387)
60 3bos_A Putative DNA replicatio 99.6 1.4E-14 4.9E-19 140.4 14.9 180 211-457 36-219 (242)
61 1fnn_A CDC6P, cell division co 99.6 4.9E-14 1.7E-18 147.0 19.6 204 205-457 16-249 (389)
62 1a5t_A Delta prime, HOLB; zinc 99.6 2.3E-14 7.7E-19 147.8 16.5 181 209-457 5-207 (334)
63 2r62_A Cell division protease 99.6 4.8E-16 1.7E-20 154.7 3.7 194 206-457 11-228 (268)
64 2qby_B CDC6 homolog 3, cell di 99.6 1.3E-14 4.4E-19 151.4 14.4 201 205-457 19-247 (384)
65 3te6_A Regulatory protein SIR3 99.6 8.9E-15 3E-19 149.3 11.3 236 207-483 21-309 (318)
66 2gno_A DNA polymerase III, gam 99.6 2E-14 6.8E-19 146.4 13.2 147 210-411 1-152 (305)
67 2z4s_A Chromosomal replication 99.5 1.7E-14 5.9E-19 154.3 12.2 167 238-457 130-308 (440)
68 3pxg_A Negative regulator of g 99.5 9.3E-15 3.2E-19 157.6 9.5 138 5-183 328-468 (468)
69 1sxj_A Activator 1 95 kDa subu 99.5 4.2E-14 1.4E-18 154.3 14.4 193 206-457 39-254 (516)
70 3pxg_A Negative regulator of g 99.5 2.9E-14 1E-18 153.7 12.0 178 206-440 180-361 (468)
71 1in4_A RUVB, holliday junction 99.5 5.5E-13 1.9E-17 137.4 19.2 191 206-457 25-225 (334)
72 3cf2_A TER ATPase, transitiona 99.5 2.2E-14 7.7E-19 162.3 8.9 193 205-457 476-693 (806)
73 3cf2_A TER ATPase, transitiona 99.5 3.3E-14 1.1E-18 160.9 9.9 193 206-457 204-417 (806)
74 1jbk_A CLPB protein; beta barr 99.5 7E-14 2.4E-18 130.0 10.3 157 205-407 21-194 (195)
75 2dhr_A FTSH; AAA+ protein, hex 99.5 1.5E-13 5.2E-18 148.5 14.2 195 206-457 31-246 (499)
76 1ixz_A ATP-dependent metallopr 99.5 3.9E-13 1.3E-17 132.6 14.8 193 206-457 16-231 (254)
77 2qby_A CDC6 homolog 1, cell di 99.5 3.3E-13 1.1E-17 140.0 14.4 202 204-457 18-247 (386)
78 1iy2_A ATP-dependent metallopr 99.4 1E-12 3.4E-17 131.7 15.7 193 206-457 40-255 (278)
79 2p65_A Hypothetical protein PF 99.4 7.9E-13 2.7E-17 122.6 11.4 149 202-393 18-184 (187)
80 1ypw_A Transitional endoplasmi 99.4 3.3E-14 1.1E-18 162.7 2.0 169 203-412 474-662 (806)
81 1qvr_A CLPB protein; coiled co 99.4 1.8E-12 6.3E-17 149.5 15.9 182 206-440 170-368 (854)
82 3pxi_A Negative regulator of g 99.4 7.2E-13 2.5E-17 151.1 12.0 177 206-439 180-360 (758)
83 2x8a_A Nuclear valosin-contain 99.4 4.5E-12 1.6E-16 127.0 15.9 198 206-457 10-228 (274)
84 1r6b_X CLPA protein; AAA+, N-t 99.4 7.8E-12 2.7E-16 142.5 17.2 181 206-440 186-385 (758)
85 3f8t_A Predicted ATPase involv 99.2 7.5E-11 2.6E-15 124.8 12.3 226 196-457 204-458 (506)
86 1ypw_A Transitional endoplasmi 99.2 1.1E-10 3.7E-15 133.7 12.4 164 206-411 204-385 (806)
87 1w5s_A Origin recognition comp 99.1 2.7E-10 9.1E-15 119.6 11.5 211 204-457 20-268 (412)
88 3ec2_A DNA replication protein 99.1 4.2E-10 1.4E-14 104.9 10.7 149 210-388 18-172 (180)
89 2w58_A DNAI, primosome compone 99.0 2.3E-10 8E-15 108.4 6.1 105 239-360 55-165 (202)
90 4akg_A Glutathione S-transfera 99.0 4.9E-10 1.7E-14 140.4 8.2 145 239-414 1268-1434(2695)
91 1jr3_D DNA polymerase III, del 98.9 7.1E-09 2.4E-13 106.7 13.4 165 239-457 19-187 (343)
92 2kjq_A DNAA-related protein; s 98.9 2.7E-09 9.2E-14 96.9 7.7 110 239-393 37-146 (149)
93 4akg_A Glutathione S-transfera 98.9 2E-08 6.7E-13 126.2 16.9 135 240-407 647-789 (2695)
94 2qen_A Walker-type ATPase; unk 98.8 1.9E-07 6.5E-12 95.1 17.2 173 206-439 12-234 (350)
95 2qgz_A Helicase loader, putati 98.7 3.7E-09 1.2E-13 107.6 4.1 105 239-360 153-264 (308)
96 3vkg_A Dynein heavy chain, cyt 98.7 6.8E-09 2.3E-13 131.0 6.8 145 239-414 1305-1472(3245)
97 1tue_A Replication protein E1; 98.6 4.6E-08 1.6E-12 92.8 7.1 121 239-399 59-183 (212)
98 2fna_A Conserved hypothetical 98.6 5.8E-07 2E-11 91.6 15.8 156 206-412 13-223 (357)
99 3vkg_A Dynein heavy chain, cyt 98.5 2E-06 7E-11 108.9 18.5 134 241-407 607-749 (3245)
100 1u0j_A DNA replication protein 98.4 1.9E-06 6.5E-11 85.2 12.3 134 239-408 105-248 (267)
101 1ye8_A Protein THEP1, hypothet 98.2 6.5E-06 2.2E-10 76.7 11.0 82 240-328 2-129 (178)
102 2vhj_A Ntpase P4, P4; non- hyd 98.0 1.6E-05 5.5E-10 80.6 9.5 71 239-315 124-196 (331)
103 3dm5_A SRP54, signal recogniti 98.0 5.9E-05 2E-09 79.9 14.1 84 237-323 99-206 (443)
104 2orw_A Thymidine kinase; TMTK, 98.0 6.1E-06 2.1E-10 77.3 5.6 85 239-328 4-103 (184)
105 2r8r_A Sensor protein; KDPD, P 98.0 4.4E-05 1.5E-09 73.5 11.6 138 239-404 7-170 (228)
106 3upu_A ATP-dependent DNA helic 97.9 3E-05 1E-09 82.9 9.2 103 210-328 29-155 (459)
107 3jvv_A Twitching mobility prot 97.7 5.9E-05 2E-09 77.9 8.0 84 239-328 124-221 (356)
108 2eyu_A Twitching motility prot 97.7 0.00015 5E-09 71.7 10.3 84 239-328 26-123 (261)
109 2b8t_A Thymidine kinase; deoxy 97.7 8E-05 2.7E-09 71.8 7.9 87 239-328 13-116 (223)
110 3kl4_A SRP54, signal recogniti 97.6 0.00025 8.4E-09 75.0 12.0 75 237-314 96-192 (433)
111 2r2a_A Uncharacterized protein 97.6 7.6E-05 2.6E-09 70.7 6.8 122 239-393 6-151 (199)
112 1z6t_A APAF-1, apoptotic prote 97.5 0.0011 3.7E-08 72.7 15.4 47 205-260 123-169 (591)
113 2a5y_B CED-4; apoptosis; HET: 97.5 0.00093 3.2E-08 72.9 14.4 44 209-260 131-174 (549)
114 2ewv_A Twitching motility prot 97.5 0.00018 6.1E-09 74.8 7.8 84 239-328 137-234 (372)
115 3e70_C DPA, signal recognition 97.5 0.0013 4.3E-08 67.1 13.8 39 237-278 128-166 (328)
116 1xx6_A Thymidine kinase; NESG, 97.4 0.00021 7.1E-09 67.2 6.4 85 239-328 9-108 (191)
117 1vma_A Cell division protein F 97.4 0.0033 1.1E-07 63.4 15.5 42 237-281 103-144 (306)
118 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00081 2.8E-08 63.8 10.2 25 239-263 24-48 (235)
119 2p5t_B PEZT; postsegregational 97.3 0.00071 2.4E-08 66.1 9.7 41 234-280 28-68 (253)
120 2xxa_A Signal recognition part 97.3 0.0049 1.7E-07 65.2 16.1 84 237-323 99-207 (433)
121 1qhx_A CPT, protein (chloramph 97.3 0.00021 7.1E-09 65.4 4.8 34 239-278 4-37 (178)
122 3cmw_A Protein RECA, recombina 97.3 0.00074 2.5E-08 82.0 10.8 74 239-315 1083-1174(1706)
123 3cmu_A Protein RECA, recombina 97.2 0.0007 2.4E-08 83.2 10.4 71 238-312 1427-1516(2050)
124 2ffh_A Protein (FFH); SRP54, s 97.2 0.0022 7.4E-08 67.7 12.7 42 237-281 97-138 (425)
125 1g5t_A COB(I)alamin adenosyltr 97.2 0.0016 5.5E-08 61.2 10.4 103 239-360 29-169 (196)
126 1zu4_A FTSY; GTPase, signal re 97.2 0.0026 8.9E-08 64.6 12.5 40 238-280 105-144 (320)
127 1gvn_B Zeta; postsegregational 97.2 0.00051 1.7E-08 68.7 6.9 38 235-278 30-67 (287)
128 3tqc_A Pantothenate kinase; bi 97.2 0.00068 2.3E-08 68.9 7.8 96 157-280 38-133 (321)
129 3lw7_A Adenylate kinase relate 97.2 0.00061 2.1E-08 61.4 6.8 76 240-326 3-100 (179)
130 3hr8_A Protein RECA; alpha and 97.1 0.0018 6.3E-08 66.6 11.0 73 239-315 62-153 (356)
131 3sfz_A APAF-1, apoptotic pepti 97.1 0.0061 2.1E-07 72.2 17.0 64 206-280 124-190 (1249)
132 1j8m_F SRP54, signal recogniti 97.1 0.0017 6E-08 65.1 10.2 41 238-281 98-138 (297)
133 3e1s_A Exodeoxyribonuclease V, 97.1 0.00044 1.5E-08 76.0 6.1 86 239-328 205-306 (574)
134 2cdn_A Adenylate kinase; phosp 97.1 0.00031 1.1E-08 65.8 4.3 33 232-264 14-46 (201)
135 4a74_A DNA repair and recombin 97.1 0.0028 9.6E-08 60.0 10.9 24 239-262 26-49 (231)
136 2j9r_A Thymidine kinase; TK1, 97.1 0.0005 1.7E-08 65.6 5.3 89 236-328 25-128 (214)
137 3trf_A Shikimate kinase, SK; a 97.0 0.00036 1.2E-08 64.3 3.7 26 239-264 6-31 (185)
138 2fz4_A DNA repair protein RAD2 97.0 0.0019 6.5E-08 62.5 8.6 24 240-263 110-133 (237)
139 1qf9_A UMP/CMP kinase, protein 96.9 0.0024 8.4E-08 58.6 8.9 27 237-263 5-31 (194)
140 3nh6_A ATP-binding cassette SU 96.9 0.0026 8.9E-08 64.1 9.6 25 239-263 81-105 (306)
141 3foz_A TRNA delta(2)-isopenten 96.9 0.0024 8.2E-08 64.3 9.2 28 237-264 9-36 (316)
142 1rz3_A Hypothetical protein rb 96.9 0.0016 5.5E-08 61.2 7.5 57 213-280 5-61 (201)
143 3kb2_A SPBC2 prophage-derived 96.9 0.00059 2E-08 61.7 4.2 25 240-264 3-27 (173)
144 3zvl_A Bifunctional polynucleo 96.9 0.0091 3.1E-07 62.7 14.0 146 236-409 256-412 (416)
145 2rhm_A Putative kinase; P-loop 96.9 0.00058 2E-08 63.1 4.2 28 237-264 4-31 (193)
146 1ls1_A Signal recognition part 96.9 0.0096 3.3E-07 59.6 13.4 41 237-280 97-137 (295)
147 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.0012 4.2E-08 67.3 6.8 81 239-328 172-264 (330)
148 3vaa_A Shikimate kinase, SK; s 96.9 0.00054 1.9E-08 64.2 3.8 26 239-264 26-51 (199)
149 2cvh_A DNA repair and recombin 96.9 0.0039 1.3E-07 58.6 9.8 35 239-279 21-55 (220)
150 1knq_A Gluconate kinase; ALFA/ 96.8 0.00082 2.8E-08 61.3 4.5 35 239-281 9-43 (175)
151 1nks_A Adenylate kinase; therm 96.8 0.00059 2E-08 62.9 3.6 35 240-277 3-37 (194)
152 1kht_A Adenylate kinase; phosp 96.8 0.00066 2.3E-08 62.5 3.7 26 239-264 4-29 (192)
153 2yhs_A FTSY, cell division pro 96.8 0.011 3.8E-07 63.2 13.6 28 237-264 292-319 (503)
154 3iij_A Coilin-interacting nucl 96.8 0.00072 2.5E-08 62.1 3.9 26 239-264 12-37 (180)
155 2v3c_C SRP54, signal recogniti 96.8 0.003 1E-07 66.9 9.1 41 237-280 98-138 (432)
156 2ehv_A Hypothetical protein PH 96.8 0.0041 1.4E-07 59.7 9.4 22 239-260 31-52 (251)
157 2ga8_A Hypothetical 39.9 kDa p 96.8 0.0011 3.9E-08 67.9 5.5 49 209-264 2-50 (359)
158 3umf_A Adenylate kinase; rossm 96.8 0.00075 2.5E-08 64.7 3.9 36 236-279 27-62 (217)
159 2ze6_A Isopentenyl transferase 96.8 0.00083 2.8E-08 65.8 4.3 25 240-264 3-27 (253)
160 1y63_A LMAJ004144AAA protein; 96.8 0.0008 2.7E-08 62.3 4.0 26 237-262 9-34 (184)
161 1zp6_A Hypothetical protein AT 96.7 0.00086 2.9E-08 62.0 4.0 33 239-277 10-42 (191)
162 2ff7_A Alpha-hemolysin translo 96.7 0.0049 1.7E-07 60.1 9.6 25 239-263 36-60 (247)
163 1via_A Shikimate kinase; struc 96.7 0.00069 2.4E-08 61.9 3.2 25 240-264 6-30 (175)
164 2zr9_A Protein RECA, recombina 96.7 0.003 1E-07 64.9 8.1 72 239-314 62-152 (349)
165 1tev_A UMP-CMP kinase; ploop, 96.7 0.0009 3.1E-08 61.7 3.7 27 238-264 3-29 (196)
166 3t61_A Gluconokinase; PSI-biol 96.7 0.001 3.5E-08 62.3 4.2 26 238-263 18-43 (202)
167 1n0w_A DNA repair protein RAD5 96.7 0.0039 1.3E-07 59.6 8.3 41 239-279 25-68 (243)
168 2c95_A Adenylate kinase 1; tra 96.7 0.00096 3.3E-08 61.8 3.8 28 237-264 8-35 (196)
169 1kag_A SKI, shikimate kinase I 96.7 0.0008 2.7E-08 61.1 3.2 25 239-263 5-29 (173)
170 1w4r_A Thymidine kinase; type 96.7 0.0037 1.3E-07 58.6 7.7 81 239-328 21-117 (195)
171 1zuh_A Shikimate kinase; alpha 96.7 0.00097 3.3E-08 60.5 3.6 26 239-264 8-33 (168)
172 2vli_A Antibiotic resistance p 96.7 0.00077 2.6E-08 61.7 3.0 28 237-264 4-31 (183)
173 2iut_A DNA translocase FTSK; n 96.7 0.025 8.6E-07 61.5 15.2 74 301-408 343-420 (574)
174 1u94_A RECA protein, recombina 96.6 0.0046 1.6E-07 63.7 9.0 73 239-314 64-154 (356)
175 2iyv_A Shikimate kinase, SK; t 96.6 0.00089 3.1E-08 61.6 3.3 25 240-264 4-28 (184)
176 1ukz_A Uridylate kinase; trans 96.6 0.0011 3.8E-08 62.0 3.9 28 235-262 12-39 (203)
177 1aky_A Adenylate kinase; ATP:A 96.6 0.0011 3.7E-08 63.1 3.7 27 238-264 4-30 (220)
178 3b9q_A Chloroplast SRP recepto 96.6 0.0094 3.2E-07 59.9 10.8 27 238-264 100-126 (302)
179 3tlx_A Adenylate kinase 2; str 96.6 0.0021 7.2E-08 62.4 5.5 26 237-262 28-53 (243)
180 3a8t_A Adenylate isopentenyltr 96.6 0.0011 3.6E-08 67.7 3.5 33 238-276 40-72 (339)
181 2yvu_A Probable adenylyl-sulfa 96.6 0.0023 7.8E-08 59.0 5.5 36 238-276 13-48 (186)
182 3sr0_A Adenylate kinase; phosp 96.6 0.0011 3.7E-08 63.0 3.3 33 240-280 2-34 (206)
183 3crm_A TRNA delta(2)-isopenten 96.6 0.0016 5.5E-08 66.1 4.7 32 239-276 6-37 (323)
184 3uie_A Adenylyl-sulfate kinase 96.5 0.0021 7.2E-08 60.2 5.2 27 238-264 25-51 (200)
185 1ly1_A Polynucleotide kinase; 96.5 0.0013 4.6E-08 59.8 3.7 23 239-261 3-25 (181)
186 1e6c_A Shikimate kinase; phosp 96.5 0.0012 4E-08 59.9 3.2 25 240-264 4-28 (173)
187 3c8u_A Fructokinase; YP_612366 96.5 0.0024 8.3E-08 60.2 5.4 25 239-263 23-47 (208)
188 3cm0_A Adenylate kinase; ATP-b 96.5 0.0012 3.9E-08 60.8 3.0 25 239-263 5-29 (186)
189 1zd8_A GTP:AMP phosphotransfer 96.5 0.0013 4.3E-08 63.0 3.4 27 237-263 6-32 (227)
190 1zak_A Adenylate kinase; ATP:A 96.5 0.0011 3.8E-08 63.1 2.9 27 237-263 4-30 (222)
191 1ak2_A Adenylate kinase isoenz 96.5 0.0015 5.2E-08 62.8 3.8 28 237-264 15-42 (233)
192 3cmu_A Protein RECA, recombina 96.5 0.0069 2.4E-07 74.6 10.1 74 239-315 1082-1173(2050)
193 1vt4_I APAF-1 related killer D 96.4 0.025 8.4E-07 65.6 14.0 47 204-260 126-172 (1221)
194 2bwj_A Adenylate kinase 5; pho 96.4 0.0015 5.2E-08 60.5 3.5 25 239-263 13-37 (199)
195 3fvq_A Fe(3+) IONS import ATP- 96.4 0.004 1.4E-07 64.1 6.9 26 239-264 31-56 (359)
196 2pt5_A Shikimate kinase, SK; a 96.4 0.0017 5.9E-08 58.6 3.6 25 240-264 2-26 (168)
197 2og2_A Putative signal recogni 96.4 0.014 4.7E-07 60.2 10.7 28 237-264 156-183 (359)
198 3rlf_A Maltose/maltodextrin im 96.4 0.0045 1.5E-07 64.3 7.0 26 239-264 30-55 (381)
199 3fb4_A Adenylate kinase; psych 96.4 0.0018 6.2E-08 61.1 3.7 25 240-264 2-26 (216)
200 3dl0_A Adenylate kinase; phosp 96.4 0.0018 6.1E-08 61.3 3.5 24 240-263 2-25 (216)
201 2j37_W Signal recognition part 96.4 0.15 5E-06 54.8 18.9 85 237-324 100-208 (504)
202 1p9r_A General secretion pathw 96.4 0.0057 1.9E-07 64.4 7.7 84 239-328 168-261 (418)
203 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0027 9.2E-08 62.2 4.8 26 238-263 4-29 (260)
204 3tau_A Guanylate kinase, GMP k 96.3 0.0019 6.6E-08 61.0 3.7 24 239-262 9-32 (208)
205 1vpl_A ABC transporter, ATP-bi 96.3 0.0054 1.8E-07 60.2 6.8 25 239-263 42-66 (256)
206 2pez_A Bifunctional 3'-phospho 96.3 0.0035 1.2E-07 57.3 5.2 35 239-276 6-40 (179)
207 1kgd_A CASK, peripheral plasma 96.3 0.0022 7.7E-08 59.0 3.9 24 239-262 6-29 (180)
208 2qor_A Guanylate kinase; phosp 96.3 0.002 6.8E-08 60.5 3.5 25 238-262 12-36 (204)
209 3be4_A Adenylate kinase; malar 96.3 0.0018 6.2E-08 61.5 3.2 26 239-264 6-31 (217)
210 3exa_A TRNA delta(2)-isopenten 96.3 0.0023 7.9E-08 64.5 4.0 27 238-264 3-29 (322)
211 2plr_A DTMP kinase, probable t 96.3 0.0026 8.8E-08 59.5 4.1 27 238-264 4-30 (213)
212 1xp8_A RECA protein, recombina 96.3 0.0071 2.4E-07 62.5 7.7 73 239-314 75-165 (366)
213 2wwf_A Thymidilate kinase, put 96.3 0.0026 8.8E-08 59.7 4.1 28 237-264 9-36 (212)
214 4eun_A Thermoresistant glucoki 96.3 0.0025 8.5E-08 59.7 3.9 34 239-280 30-63 (200)
215 1nn5_A Similar to deoxythymidy 96.3 0.0023 7.9E-08 60.0 3.7 28 237-264 8-35 (215)
216 2px0_A Flagellar biosynthesis 96.3 0.011 3.9E-07 59.1 8.9 42 237-280 104-145 (296)
217 1uj2_A Uridine-cytidine kinase 96.3 0.0032 1.1E-07 61.3 4.7 43 237-282 21-68 (252)
218 3qf4_B Uncharacterized ABC tra 96.2 0.013 4.5E-07 64.5 9.7 26 239-264 382-407 (598)
219 2bbw_A Adenylate kinase 4, AK4 96.2 0.003 1E-07 61.2 4.0 27 237-263 26-52 (246)
220 1svm_A Large T antigen; AAA+ f 96.2 0.0057 2E-07 63.5 6.3 60 239-314 170-229 (377)
221 2pbr_A DTMP kinase, thymidylat 96.2 0.0042 1.4E-07 57.1 4.9 24 240-263 2-25 (195)
222 1odf_A YGR205W, hypothetical 3 96.2 0.0056 1.9E-07 61.2 6.0 30 235-264 28-57 (290)
223 2qt1_A Nicotinamide riboside k 96.1 0.0028 9.5E-08 59.5 3.6 34 229-262 11-45 (207)
224 4a82_A Cystic fibrosis transme 96.1 0.011 3.7E-07 64.9 8.8 26 239-264 368-393 (578)
225 1w36_D RECD, exodeoxyribonucle 96.1 0.012 4.2E-07 64.9 9.3 28 301-328 262-289 (608)
226 1sq5_A Pantothenate kinase; P- 96.1 0.006 2E-07 61.4 6.1 42 237-281 79-122 (308)
227 3qf4_A ABC transporter, ATP-bi 96.1 0.014 4.7E-07 64.2 9.4 26 239-264 370-395 (587)
228 2oap_1 GSPE-2, type II secreti 96.1 0.0066 2.3E-07 65.6 6.7 82 239-328 261-357 (511)
229 2z43_A DNA repair and recombin 96.1 0.014 4.7E-07 59.2 8.7 41 239-279 108-151 (324)
230 2yyz_A Sugar ABC transporter, 96.1 0.0077 2.6E-07 62.0 6.8 25 239-263 30-54 (359)
231 2it1_A 362AA long hypothetical 96.1 0.0078 2.7E-07 62.1 6.9 25 239-263 30-54 (362)
232 3b5x_A Lipid A export ATP-bind 96.1 0.018 6.1E-07 63.2 10.2 26 239-264 370-395 (582)
233 1e4v_A Adenylate kinase; trans 96.1 0.0032 1.1E-07 59.6 3.6 24 240-263 2-25 (214)
234 2v54_A DTMP kinase, thymidylat 96.1 0.0047 1.6E-07 57.4 4.7 25 238-262 4-28 (204)
235 1v43_A Sugar-binding transport 96.1 0.0084 2.9E-07 62.1 7.0 25 239-263 38-62 (372)
236 3b60_A Lipid A export ATP-bind 96.1 0.017 5.7E-07 63.4 9.8 25 239-263 370-394 (582)
237 1uf9_A TT1252 protein; P-loop, 96.1 0.0034 1.2E-07 58.3 3.6 26 236-261 6-31 (203)
238 2jaq_A Deoxyguanosine kinase; 96.0 0.0036 1.2E-07 58.1 3.7 25 240-264 2-26 (205)
239 1z47_A CYSA, putative ABC-tran 96.0 0.0071 2.4E-07 62.2 6.2 25 239-263 42-66 (355)
240 4g1u_C Hemin import ATP-bindin 96.0 0.011 3.9E-07 58.2 7.4 26 239-264 38-63 (266)
241 3tr0_A Guanylate kinase, GMP k 96.0 0.0038 1.3E-07 58.1 3.8 24 239-262 8-31 (205)
242 3lda_A DNA repair protein RAD5 96.0 0.032 1.1E-06 58.3 11.2 41 239-279 179-222 (400)
243 2j41_A Guanylate kinase; GMP, 96.0 0.0035 1.2E-07 58.4 3.5 24 239-262 7-30 (207)
244 1pzn_A RAD51, DNA repair and r 96.0 0.015 5E-07 59.7 8.4 41 239-279 132-175 (349)
245 2bdt_A BH3686; alpha-beta prot 96.0 0.0039 1.3E-07 57.5 3.7 23 240-262 4-26 (189)
246 3llm_A ATP-dependent RNA helic 96.0 0.041 1.4E-06 52.6 11.1 20 239-258 77-96 (235)
247 2if2_A Dephospho-COA kinase; a 96.0 0.0034 1.2E-07 58.7 3.2 22 240-262 3-24 (204)
248 3a00_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 57.9 3.3 24 240-263 3-26 (186)
249 3eph_A TRNA isopentenyltransfe 96.0 0.0042 1.4E-07 64.8 4.1 26 239-264 3-28 (409)
250 3d3q_A TRNA delta(2)-isopenten 95.9 0.0042 1.4E-07 63.4 4.0 26 239-264 8-33 (340)
251 2r6a_A DNAB helicase, replicat 95.9 0.11 3.9E-06 54.9 15.3 38 239-278 204-241 (454)
252 3gfo_A Cobalt import ATP-bindi 95.9 0.011 3.9E-07 58.5 6.9 25 239-263 35-59 (275)
253 3r20_A Cytidylate kinase; stru 95.9 0.005 1.7E-07 59.5 4.2 27 237-263 8-34 (233)
254 1oxx_K GLCV, glucose, ABC tran 95.9 0.0057 2E-07 62.9 4.8 25 239-263 32-56 (353)
255 2xb4_A Adenylate kinase; ATP-b 95.9 0.0041 1.4E-07 59.4 3.5 23 240-262 2-24 (223)
256 1m7g_A Adenylylsulfate kinase; 95.9 0.0058 2E-07 57.6 4.4 26 238-263 25-50 (211)
257 3nwj_A ATSK2; P loop, shikimat 95.9 0.0044 1.5E-07 60.6 3.6 45 210-264 30-74 (250)
258 1cke_A CK, MSSA, protein (cyti 95.8 0.0047 1.6E-07 58.5 3.7 24 239-262 6-29 (227)
259 3ozx_A RNAse L inhibitor; ATP 95.8 0.045 1.5E-06 59.4 11.7 33 231-263 18-50 (538)
260 2z0h_A DTMP kinase, thymidylat 95.8 0.0067 2.3E-07 56.0 4.6 24 240-263 2-25 (197)
261 3asz_A Uridine kinase; cytidin 95.8 0.0079 2.7E-07 56.4 5.1 25 239-263 7-31 (211)
262 1lvg_A Guanylate kinase, GMP k 95.8 0.0046 1.6E-07 57.9 3.4 24 239-262 5-28 (198)
263 2ius_A DNA translocase FTSK; n 95.8 0.068 2.3E-06 57.5 12.9 75 301-409 297-375 (512)
264 3p32_A Probable GTPase RV1496/ 95.8 0.048 1.6E-06 55.8 11.3 28 237-264 78-105 (355)
265 3ney_A 55 kDa erythrocyte memb 95.8 0.006 2E-07 57.4 3.9 24 239-262 20-43 (197)
266 2gza_A Type IV secretion syste 95.7 0.0097 3.3E-07 61.3 5.8 82 239-328 176-276 (361)
267 1g29_1 MALK, maltose transport 95.7 0.01 3.6E-07 61.4 6.0 25 239-263 30-54 (372)
268 1jjv_A Dephospho-COA kinase; P 95.7 0.0045 1.5E-07 58.0 3.0 21 240-260 4-24 (206)
269 3ake_A Cytidylate kinase; CMP 95.7 0.006 2E-07 56.9 3.6 25 240-264 4-28 (208)
270 3d31_A Sulfate/molybdate ABC t 95.7 0.01 3.6E-07 60.8 5.6 25 239-263 27-51 (348)
271 1bif_A 6-phosphofructo-2-kinas 95.6 0.026 9E-07 60.1 8.9 88 236-327 37-147 (469)
272 1vht_A Dephospho-COA kinase; s 95.6 0.0068 2.3E-07 57.3 3.8 23 238-260 4-26 (218)
273 3tui_C Methionine import ATP-b 95.6 0.017 5.8E-07 59.6 6.9 26 239-264 55-80 (366)
274 2f6r_A COA synthase, bifunctio 95.6 0.0067 2.3E-07 60.2 3.8 25 236-260 73-97 (281)
275 1ex7_A Guanylate kinase; subst 95.6 0.0068 2.3E-07 56.5 3.6 23 240-262 3-25 (186)
276 1v5w_A DMC1, meiotic recombina 95.6 0.026 9.1E-07 57.6 8.4 41 239-279 123-166 (343)
277 1rj9_A FTSY, signal recognitio 95.5 0.013 4.3E-07 59.0 5.6 27 238-264 102-128 (304)
278 2yl4_A ATP-binding cassette SU 95.5 0.025 8.5E-07 62.2 8.5 25 239-263 371-395 (595)
279 1a7j_A Phosphoribulokinase; tr 95.5 0.0047 1.6E-07 61.8 2.4 42 237-281 4-45 (290)
280 2grj_A Dephospho-COA kinase; T 95.5 0.007 2.4E-07 56.7 3.5 34 239-280 13-46 (192)
281 2dr3_A UPF0273 protein PH0284; 95.5 0.012 4E-07 56.2 5.1 38 239-279 24-61 (247)
282 3vkw_A Replicase large subunit 95.5 0.038 1.3E-06 58.3 9.1 82 239-328 162-261 (446)
283 1qzm_A ATP-dependent protease 95.5 0.027 9.1E-07 46.3 6.3 66 396-466 1-71 (94)
284 4e22_A Cytidylate kinase; P-lo 95.5 0.0093 3.2E-07 58.1 4.2 25 239-263 28-52 (252)
285 1htw_A HI0065; nucleotide-bind 95.4 0.012 4.2E-07 53.2 4.6 24 239-262 34-57 (158)
286 1znw_A Guanylate kinase, GMP k 95.4 0.0084 2.9E-07 56.4 3.7 24 239-262 21-44 (207)
287 2eyq_A TRCF, transcription-rep 95.4 0.058 2E-06 63.9 11.5 39 210-259 607-645 (1151)
288 3cmw_A Protein RECA, recombina 95.4 0.029 1E-06 68.2 9.0 72 239-314 733-823 (1706)
289 2orv_A Thymidine kinase; TP4A 95.4 0.038 1.3E-06 53.1 8.0 79 239-327 20-114 (234)
290 1z6g_A Guanylate kinase; struc 95.4 0.0083 2.8E-07 57.1 3.4 24 239-262 24-47 (218)
291 1q3t_A Cytidylate kinase; nucl 95.3 0.0098 3.4E-07 57.1 3.9 28 236-263 14-41 (236)
292 3h1t_A Type I site-specific re 95.3 0.035 1.2E-06 60.7 8.8 43 210-264 182-224 (590)
293 2h92_A Cytidylate kinase; ross 95.3 0.0085 2.9E-07 56.5 3.3 27 238-264 3-29 (219)
294 1gtv_A TMK, thymidylate kinase 95.3 0.0059 2E-07 57.3 1.9 25 240-264 2-26 (214)
295 4b3f_X DNA-binding protein smu 95.2 0.049 1.7E-06 60.5 9.6 70 239-319 206-275 (646)
296 4gp7_A Metallophosphoesterase; 95.2 0.012 4.3E-07 53.5 4.0 19 239-257 10-28 (171)
297 3e2i_A Thymidine kinase; Zn-bi 95.2 0.015 5E-07 55.4 4.3 84 239-328 29-128 (219)
298 3io5_A Recombination and repai 95.1 0.03 1E-06 56.6 6.7 74 239-314 29-124 (333)
299 1s96_A Guanylate kinase, GMP k 95.1 0.012 4E-07 56.3 3.7 25 239-263 17-41 (219)
300 1ltq_A Polynucleotide kinase; 95.1 0.011 3.9E-07 58.6 3.7 24 239-262 3-26 (301)
301 4eaq_A DTMP kinase, thymidylat 95.1 0.016 5.5E-07 55.7 4.6 27 237-263 25-51 (229)
302 2i1q_A DNA repair and recombin 95.1 0.028 9.6E-07 56.6 6.7 23 239-261 99-121 (322)
303 3aez_A Pantothenate kinase; tr 95.1 0.015 5E-07 58.8 4.4 28 237-264 89-116 (312)
304 2jeo_A Uridine-cytidine kinase 95.1 0.013 4.6E-07 56.6 3.8 25 239-263 26-50 (245)
305 2wsm_A Hydrogenase expression/ 95.0 0.033 1.1E-06 52.3 6.5 27 238-264 30-56 (221)
306 3kta_A Chromosome segregation 95.0 0.014 4.9E-07 53.2 3.8 27 238-264 26-52 (182)
307 2qmh_A HPR kinase/phosphorylas 95.0 0.0095 3.3E-07 56.1 2.5 24 239-262 35-58 (205)
308 3g5u_A MCG1178, multidrug resi 95.0 0.048 1.6E-06 65.4 9.2 26 239-264 417-442 (1284)
309 4f4c_A Multidrug resistance pr 95.0 0.054 1.8E-06 65.1 9.7 25 240-264 1107-1131(1321)
310 4f4c_A Multidrug resistance pr 95.0 0.03 1E-06 67.3 7.5 26 239-264 445-470 (1321)
311 2zts_A Putative uncharacterize 95.0 0.038 1.3E-06 52.6 6.9 37 239-278 31-68 (251)
312 2q6t_A DNAB replication FORK h 95.0 0.12 4.1E-06 54.5 11.3 38 239-278 201-238 (444)
313 1c9k_A COBU, adenosylcobinamid 94.9 0.011 3.7E-07 54.8 2.6 32 241-279 2-33 (180)
314 3lnc_A Guanylate kinase, GMP k 94.9 0.0085 2.9E-07 57.3 1.9 24 239-262 28-52 (231)
315 1xjc_A MOBB protein homolog; s 94.9 0.025 8.6E-07 51.8 5.0 26 239-264 5-30 (169)
316 1cr0_A DNA primase/helicase; R 94.9 0.023 7.9E-07 56.3 5.2 36 239-277 36-72 (296)
317 2axn_A 6-phosphofructo-2-kinas 94.8 0.017 5.7E-07 62.6 4.1 28 237-264 34-61 (520)
318 2i3b_A HCR-ntpase, human cance 94.7 0.017 5.7E-07 53.9 3.4 24 240-263 3-26 (189)
319 1x6v_B Bifunctional 3'-phospho 94.7 0.025 8.6E-07 62.3 5.3 37 237-276 51-87 (630)
320 3j16_B RLI1P; ribosome recycli 94.7 0.17 6E-06 55.6 11.9 26 239-264 104-129 (608)
321 3bgw_A DNAB-like replicative h 94.7 0.11 3.9E-06 54.8 10.1 38 239-279 198-235 (444)
322 1nlf_A Regulatory protein REPA 94.6 0.033 1.1E-06 54.8 5.4 25 239-263 31-55 (279)
323 2v9p_A Replication protein E1; 94.5 0.022 7.4E-07 57.3 3.8 26 239-264 127-152 (305)
324 1sky_E F1-ATPase, F1-ATP synth 94.4 0.078 2.7E-06 56.3 7.9 25 239-263 152-176 (473)
325 1m8p_A Sulfate adenylyltransfe 94.3 0.039 1.3E-06 60.4 5.7 38 237-277 395-433 (573)
326 2ocp_A DGK, deoxyguanosine kin 94.3 0.026 8.8E-07 54.3 3.8 27 238-264 2-28 (241)
327 3ozx_A RNAse L inhibitor; ATP 94.2 0.12 4.1E-06 56.0 9.3 26 239-264 295-320 (538)
328 3g5u_A MCG1178, multidrug resi 94.2 0.11 3.6E-06 62.4 9.5 25 239-263 1060-1084(1284)
329 1np6_A Molybdopterin-guanine d 94.1 0.03 1E-06 51.5 3.7 26 239-264 7-32 (174)
330 4a1f_A DNAB helicase, replicat 94.1 0.12 4E-06 52.7 8.4 38 237-277 44-82 (338)
331 3fdi_A Uncharacterized protein 94.1 0.035 1.2E-06 52.1 4.1 26 239-264 7-32 (201)
332 3bh0_A DNAB-like replicative h 94.0 0.049 1.7E-06 54.8 5.4 37 239-278 69-105 (315)
333 3tif_A Uncharacterized ABC tra 94.0 0.025 8.4E-07 54.6 3.0 26 239-264 32-57 (235)
334 2f1r_A Molybdopterin-guanine d 94.0 0.019 6.5E-07 52.7 2.1 25 240-264 4-28 (171)
335 1g8f_A Sulfate adenylyltransfe 93.9 0.042 1.4E-06 59.2 4.8 26 238-263 395-420 (511)
336 3ly5_A ATP-dependent RNA helic 93.9 0.33 1.1E-05 47.0 11.1 18 240-257 93-110 (262)
337 2pcj_A ABC transporter, lipopr 93.9 0.025 8.7E-07 54.1 2.8 25 239-263 31-55 (224)
338 1oix_A RAS-related protein RAB 93.9 0.035 1.2E-06 51.1 3.6 26 239-264 30-55 (191)
339 2qm8_A GTPase/ATPase; G protei 93.9 0.42 1.4E-05 48.4 12.0 26 239-264 56-81 (337)
340 2lkc_A Translation initiation 93.8 0.044 1.5E-06 49.0 4.2 25 237-261 7-31 (178)
341 2ged_A SR-beta, signal recogni 93.8 0.038 1.3E-06 50.4 3.8 24 239-262 49-72 (193)
342 2onk_A Molybdate/tungstate ABC 93.8 0.032 1.1E-06 54.1 3.3 26 239-264 25-50 (240)
343 2cbz_A Multidrug resistance-as 93.7 0.03 1E-06 54.0 3.0 25 239-263 32-56 (237)
344 1f2t_A RAD50 ABC-ATPase; DNA d 93.7 0.043 1.5E-06 48.9 3.8 27 238-264 23-49 (149)
345 1b0u_A Histidine permease; ABC 93.7 0.03 1E-06 54.9 3.0 26 239-264 33-58 (262)
346 3iev_A GTP-binding protein ERA 93.7 0.35 1.2E-05 48.3 10.9 89 239-327 11-120 (308)
347 3sop_A Neuronal-specific septi 93.6 0.037 1.3E-06 54.6 3.5 25 240-264 4-28 (270)
348 3b85_A Phosphate starvation-in 93.6 0.027 9.3E-07 53.3 2.4 23 239-261 23-45 (208)
349 2v6i_A RNA helicase; membrane, 93.6 0.17 5.8E-06 53.1 8.8 17 239-255 3-19 (431)
350 1p5z_B DCK, deoxycytidine kina 93.6 0.019 6.6E-07 56.0 1.3 27 237-263 23-49 (263)
351 4edh_A DTMP kinase, thymidylat 93.6 0.069 2.4E-06 50.6 5.1 26 239-264 7-32 (213)
352 1ky3_A GTP-binding protein YPT 93.5 0.045 1.5E-06 49.0 3.7 25 239-263 9-33 (182)
353 3cr8_A Sulfate adenylyltranfer 93.5 0.043 1.5E-06 59.7 4.1 26 239-264 370-395 (552)
354 2hf9_A Probable hydrogenase ni 93.5 0.14 4.7E-06 48.1 7.1 27 238-264 38-64 (226)
355 3tqf_A HPR(Ser) kinase; transf 93.5 0.04 1.4E-06 50.6 3.1 23 239-261 17-39 (181)
356 3thx_A DNA mismatch repair pro 93.4 0.21 7.1E-06 57.7 9.7 22 239-260 663-684 (934)
357 1mv5_A LMRA, multidrug resista 93.4 0.037 1.3E-06 53.5 3.1 26 239-264 29-54 (243)
358 3fkq_A NTRC-like two-domain pr 93.4 1.4 4.7E-05 45.1 15.2 40 238-280 143-183 (373)
359 2zu0_C Probable ATP-dependent 93.4 0.043 1.5E-06 53.9 3.5 24 239-262 47-70 (267)
360 2olj_A Amino acid ABC transpor 93.3 0.038 1.3E-06 54.3 3.0 26 239-264 51-76 (263)
361 2d2e_A SUFC protein; ABC-ATPas 93.3 0.044 1.5E-06 53.3 3.4 23 239-261 30-52 (250)
362 3lxw_A GTPase IMAP family memb 93.3 0.29 9.8E-06 47.2 9.3 22 239-260 22-43 (247)
363 2p67_A LAO/AO transport system 93.3 0.18 6.3E-06 51.1 8.2 27 238-264 56-82 (341)
364 1g6h_A High-affinity branched- 93.3 0.035 1.2E-06 54.3 2.6 25 239-263 34-58 (257)
365 3ice_A Transcription terminati 93.3 0.14 4.8E-06 53.0 7.2 26 239-264 175-200 (422)
366 3ld9_A DTMP kinase, thymidylat 93.3 0.059 2E-06 51.6 4.1 27 237-263 20-46 (223)
367 3gmt_A Adenylate kinase; ssgci 93.3 0.057 1.9E-06 51.9 4.0 25 239-263 9-33 (230)
368 3lv8_A DTMP kinase, thymidylat 93.2 0.052 1.8E-06 52.5 3.7 26 239-264 28-53 (236)
369 1nrj_B SR-beta, signal recogni 93.2 0.051 1.7E-06 50.8 3.6 26 239-264 13-38 (218)
370 2y8e_A RAB-protein 6, GH09086P 93.2 0.045 1.5E-06 48.9 3.1 24 239-262 15-38 (179)
371 1sgw_A Putative ABC transporte 93.2 0.038 1.3E-06 52.6 2.6 25 239-263 36-60 (214)
372 2fn4_A P23, RAS-related protei 93.2 0.064 2.2E-06 47.9 4.1 25 239-263 10-34 (181)
373 1ji0_A ABC transporter; ATP bi 93.2 0.041 1.4E-06 53.2 2.9 25 239-263 33-57 (240)
374 2ixe_A Antigen peptide transpo 93.2 0.042 1.4E-06 54.2 3.0 26 239-264 46-71 (271)
375 2f9l_A RAB11B, member RAS onco 93.2 0.047 1.6E-06 50.4 3.2 25 239-263 6-30 (199)
376 1lw7_A Transcriptional regulat 93.2 0.046 1.6E-06 56.1 3.4 26 239-264 171-196 (365)
377 2ghi_A Transport protein; mult 93.1 0.043 1.5E-06 53.8 3.0 24 239-262 47-70 (260)
378 2gks_A Bifunctional SAT/APS ki 93.1 0.085 2.9E-06 57.3 5.6 36 238-276 372-407 (546)
379 2wjg_A FEOB, ferrous iron tran 93.1 0.059 2E-06 48.8 3.7 22 239-260 8-29 (188)
380 2yz2_A Putative ABC transporte 93.0 0.045 1.6E-06 53.7 3.0 25 239-263 34-58 (266)
381 2pze_A Cystic fibrosis transme 93.0 0.041 1.4E-06 52.8 2.6 25 239-263 35-59 (229)
382 2qi9_C Vitamin B12 import ATP- 93.0 0.045 1.5E-06 53.3 2.9 26 239-264 27-52 (249)
383 1tq4_A IIGP1, interferon-induc 92.9 0.066 2.3E-06 56.1 4.3 25 238-262 69-93 (413)
384 1z2a_A RAS-related protein RAB 92.9 0.059 2E-06 47.5 3.4 25 239-263 6-30 (168)
385 3v9p_A DTMP kinase, thymidylat 92.9 0.053 1.8E-06 52.1 3.2 26 239-264 26-51 (227)
386 2ihy_A ABC transporter, ATP-bi 92.9 0.042 1.5E-06 54.4 2.6 26 239-264 48-73 (279)
387 3thx_B DNA mismatch repair pro 92.9 0.27 9.2E-06 56.6 9.5 23 239-261 674-696 (918)
388 2wji_A Ferrous iron transport 92.8 0.059 2E-06 48.1 3.3 23 239-261 4-26 (165)
389 4ag6_A VIRB4 ATPase, type IV s 92.8 0.08 2.7E-06 54.8 4.7 37 239-278 36-72 (392)
390 3qks_A DNA double-strand break 92.8 0.068 2.3E-06 50.1 3.8 27 238-264 23-49 (203)
391 2gk6_A Regulator of nonsense t 92.8 0.077 2.6E-06 58.7 4.7 24 240-263 197-220 (624)
392 1wms_A RAB-9, RAB9, RAS-relate 92.7 0.058 2E-06 48.2 3.1 24 239-262 8-31 (177)
393 2zej_A Dardarin, leucine-rich 92.7 0.047 1.6E-06 49.7 2.5 21 240-260 4-24 (184)
394 3tmk_A Thymidylate kinase; pho 92.7 0.073 2.5E-06 50.7 3.9 26 239-264 6-31 (216)
395 2dyk_A GTP-binding protein; GT 92.7 0.071 2.4E-06 46.7 3.6 22 240-261 3-24 (161)
396 3bfv_A CAPA1, CAPB2, membrane 92.7 0.2 6.7E-06 49.2 7.1 39 239-280 83-122 (271)
397 2nq2_C Hypothetical ABC transp 92.7 0.052 1.8E-06 52.9 2.8 26 239-264 32-57 (253)
398 3hdt_A Putative kinase; struct 92.6 0.078 2.7E-06 50.7 3.9 26 239-264 15-40 (223)
399 2g6b_A RAS-related protein RAB 92.6 0.072 2.5E-06 47.7 3.5 25 239-263 11-35 (180)
400 1fzq_A ADP-ribosylation factor 92.6 0.074 2.5E-06 48.3 3.6 25 236-260 14-38 (181)
401 3tw8_B RAS-related protein RAB 92.5 0.066 2.2E-06 47.9 3.2 22 239-260 10-31 (181)
402 2yv5_A YJEQ protein; hydrolase 92.5 0.091 3.1E-06 52.5 4.5 22 240-262 167-188 (302)
403 3con_A GTPase NRAS; structural 92.5 0.071 2.4E-06 48.4 3.4 25 239-263 22-46 (190)
404 2nzj_A GTP-binding protein REM 92.5 0.071 2.4E-06 47.4 3.4 23 239-261 5-27 (175)
405 3kkq_A RAS-related protein M-R 92.5 0.089 3E-06 47.4 4.0 28 236-263 15-43 (183)
406 2ce2_X GTPase HRAS; signaling 92.5 0.073 2.5E-06 46.5 3.3 25 239-263 4-28 (166)
407 2a9k_A RAS-related protein RAL 92.5 0.08 2.7E-06 47.5 3.7 25 239-263 19-43 (187)
408 3ux8_A Excinuclease ABC, A sub 92.4 0.17 5.8E-06 56.3 7.0 35 292-326 553-590 (670)
409 3igf_A ALL4481 protein; two-do 92.4 0.16 5.3E-06 52.5 6.2 35 240-277 4-38 (374)
410 2pjz_A Hypothetical protein ST 92.4 0.057 2E-06 53.0 2.7 24 239-262 31-54 (263)
411 1kao_A RAP2A; GTP-binding prot 92.3 0.079 2.7E-06 46.4 3.4 25 239-263 4-28 (167)
412 3gd7_A Fusion complex of cysti 92.3 0.07 2.4E-06 55.5 3.4 24 239-262 48-71 (390)
413 1vg8_A RAS-related protein RAB 92.3 0.085 2.9E-06 48.6 3.7 25 239-263 9-33 (207)
414 2vp4_A Deoxynucleoside kinase; 92.3 0.051 1.7E-06 51.9 2.2 23 239-261 21-43 (230)
415 1moz_A ARL1, ADP-ribosylation 92.3 0.067 2.3E-06 48.1 2.9 24 236-259 16-39 (183)
416 3bc1_A RAS-related protein RAB 92.2 0.1 3.5E-06 47.1 4.0 25 239-263 12-36 (195)
417 1u8z_A RAS-related protein RAL 92.2 0.093 3.2E-06 46.0 3.7 25 239-263 5-29 (168)
418 1ek0_A Protein (GTP-binding pr 92.2 0.082 2.8E-06 46.6 3.3 25 239-263 4-28 (170)
419 2xau_A PRE-mRNA-splicing facto 92.1 0.84 2.9E-05 51.6 12.3 21 239-259 110-130 (773)
420 2hxs_A RAB-26, RAS-related pro 92.1 0.091 3.1E-06 46.9 3.6 24 239-262 7-30 (178)
421 2npi_A Protein CLP1; CLP1-PCF1 92.1 0.062 2.1E-06 57.2 2.8 25 239-263 139-163 (460)
422 3qf7_A RAD50; ABC-ATPase, ATPa 92.1 0.086 2.9E-06 54.2 3.8 26 239-264 24-49 (365)
423 1svi_A GTP-binding protein YSX 92.1 0.092 3.2E-06 47.8 3.7 23 239-261 24-46 (195)
424 1upt_A ARL1, ADP-ribosylation 92.1 0.11 3.6E-06 46.0 4.0 26 238-263 7-32 (171)
425 2fg5_A RAB-22B, RAS-related pr 92.1 0.088 3E-06 48.1 3.5 25 239-263 24-48 (192)
426 1s2m_A Putative ATP-dependent 92.0 0.87 3E-05 46.3 11.4 20 240-259 60-79 (400)
427 2va8_A SSO2462, SKI2-type heli 92.0 0.39 1.3E-05 53.6 9.4 19 239-257 47-65 (715)
428 3cio_A ETK, tyrosine-protein k 92.0 0.23 7.8E-06 49.5 6.7 38 239-279 105-143 (299)
429 2bov_A RAla, RAS-related prote 92.0 0.1 3.5E-06 47.8 3.9 25 239-263 15-39 (206)
430 2bbs_A Cystic fibrosis transme 92.0 0.071 2.4E-06 53.1 2.9 25 239-263 65-89 (290)
431 4tmk_A Protein (thymidylate ki 92.0 0.085 2.9E-06 50.0 3.4 26 239-264 4-29 (213)
432 2fwr_A DNA repair protein RAD2 92.0 0.15 5.3E-06 53.7 5.8 24 240-263 110-133 (472)
433 1m7b_A RND3/RHOE small GTP-bin 92.0 0.088 3E-06 47.7 3.3 25 239-263 8-32 (184)
434 3q85_A GTP-binding protein REM 92.0 0.082 2.8E-06 46.8 3.1 21 240-260 4-24 (169)
435 2gj8_A MNME, tRNA modification 92.0 0.089 3E-06 47.4 3.3 23 239-261 5-27 (172)
436 3bwd_D RAC-like GTP-binding pr 91.9 0.1 3.5E-06 46.7 3.7 24 238-261 8-31 (182)
437 1z0j_A RAB-22, RAS-related pro 91.9 0.095 3.3E-06 46.2 3.4 25 239-263 7-31 (170)
438 1m2o_B GTP-binding protein SAR 91.9 0.091 3.1E-06 48.1 3.4 24 238-261 23-46 (190)
439 1g16_A RAS-related protein SEC 91.9 0.087 3E-06 46.5 3.1 23 239-261 4-26 (170)
440 1r2q_A RAS-related protein RAB 91.9 0.078 2.7E-06 46.7 2.8 24 239-262 7-30 (170)
441 1u0l_A Probable GTPase ENGC; p 91.9 0.1 3.6E-06 52.0 4.0 23 240-262 171-193 (301)
442 3q72_A GTP-binding protein RAD 91.9 0.089 3E-06 46.4 3.1 21 239-259 3-23 (166)
443 2jlq_A Serine protease subunit 91.8 0.32 1.1E-05 51.3 8.0 23 239-261 20-44 (451)
444 3fht_A ATP-dependent RNA helic 91.8 0.45 1.5E-05 48.6 9.0 18 239-256 65-82 (412)
445 1x3s_A RAS-related protein RAB 91.8 0.087 3E-06 47.8 3.1 25 239-263 16-40 (195)
446 2oil_A CATX-8, RAS-related pro 91.8 0.1 3.4E-06 47.6 3.5 25 239-263 26-50 (193)
447 3pqc_A Probable GTP-binding pr 91.8 0.11 3.6E-06 47.1 3.7 23 239-261 24-46 (195)
448 1r8s_A ADP-ribosylation factor 91.8 0.12 4.2E-06 45.3 4.0 25 240-264 2-26 (164)
449 2fh5_B SR-beta, signal recogni 91.8 0.098 3.3E-06 48.6 3.5 26 239-264 8-33 (214)
450 4dsu_A GTPase KRAS, isoform 2B 91.8 0.091 3.1E-06 47.3 3.2 25 239-263 5-29 (189)
451 3clv_A RAB5 protein, putative; 91.7 0.13 4.3E-06 46.7 4.2 26 238-263 7-32 (208)
452 3dkp_A Probable ATP-dependent 91.7 0.78 2.7E-05 43.5 10.0 17 240-256 68-84 (245)
453 1c1y_A RAS-related protein RAP 91.7 0.097 3.3E-06 46.0 3.2 25 239-263 4-28 (167)
454 3pey_A ATP-dependent RNA helic 91.7 1.1 3.9E-05 45.0 11.8 21 239-259 45-65 (395)
455 1z08_A RAS-related protein RAB 91.7 0.1 3.6E-06 46.1 3.4 24 239-262 7-30 (170)
456 3lxx_A GTPase IMAP family memb 91.7 0.1 3.4E-06 49.8 3.5 24 239-262 30-53 (239)
457 2erx_A GTP-binding protein DI- 91.7 0.1 3.4E-06 46.1 3.3 23 239-261 4-26 (172)
458 2rcn_A Probable GTPase ENGC; Y 91.6 0.09 3.1E-06 54.0 3.3 24 239-262 216-239 (358)
459 3ihw_A Centg3; RAS, centaurin, 91.6 0.13 4.4E-06 46.9 4.0 25 239-263 21-45 (184)
460 1tf7_A KAIC; homohexamer, hexa 91.6 0.16 5.5E-06 54.8 5.4 36 239-277 282-317 (525)
461 2www_A Methylmalonic aciduria 91.5 0.13 4.6E-06 52.4 4.5 26 239-264 75-100 (349)
462 3t5g_A GTP-binding protein RHE 91.5 0.097 3.3E-06 47.0 3.0 24 239-262 7-30 (181)
463 1pui_A ENGB, probable GTP-bind 91.4 0.07 2.4E-06 49.4 2.1 24 239-262 27-50 (210)
464 2bme_A RAB4A, RAS-related prot 91.4 0.13 4.5E-06 46.3 3.8 25 239-263 11-35 (186)
465 2gf0_A GTP-binding protein DI- 91.3 0.14 4.7E-06 46.7 3.9 25 239-263 9-33 (199)
466 1q57_A DNA primase/helicase; d 91.3 0.16 5.4E-06 54.5 5.0 38 239-279 243-281 (503)
467 1fuu_A Yeast initiation factor 91.3 0.91 3.1E-05 45.9 10.6 18 240-257 60-77 (394)
468 4bas_A ADP-ribosylation factor 91.3 0.11 3.9E-06 47.3 3.3 24 239-262 18-41 (199)
469 3fho_A ATP-dependent RNA helic 91.3 0.56 1.9E-05 50.2 9.3 24 239-262 159-183 (508)
470 1f6b_A SAR1; gtpases, N-termin 91.3 0.11 3.9E-06 47.9 3.3 23 237-259 24-46 (198)
471 3oes_A GTPase rhebl1; small GT 91.3 0.12 4.2E-06 47.5 3.6 25 239-263 25-49 (201)
472 2efe_B Small GTP-binding prote 91.3 0.11 3.8E-06 46.5 3.2 24 239-262 13-36 (181)
473 3ux8_A Excinuclease ABC, A sub 91.2 0.2 6.8E-06 55.8 5.8 17 239-255 45-61 (670)
474 3la6_A Tyrosine-protein kinase 91.2 0.35 1.2E-05 47.9 7.0 40 238-280 92-132 (286)
475 3l9o_A ATP-dependent RNA helic 91.2 0.76 2.6E-05 54.1 10.9 21 239-259 200-220 (1108)
476 2zj8_A DNA helicase, putative 91.1 0.57 1.9E-05 52.4 9.5 24 239-262 40-64 (720)
477 2iwr_A Centaurin gamma 1; ANK 91.1 0.12 4E-06 46.3 3.2 25 239-263 8-32 (178)
478 1z0f_A RAB14, member RAS oncog 91.1 0.13 4.4E-06 45.8 3.4 25 239-263 16-40 (179)
479 3qkt_A DNA double-strand break 91.1 0.14 4.6E-06 52.1 3.9 28 237-264 22-49 (339)
480 2atv_A RERG, RAS-like estrogen 91.0 0.14 4.9E-06 46.8 3.7 25 239-263 29-53 (196)
481 1gwn_A RHO-related GTP-binding 91.0 0.14 4.7E-06 47.7 3.6 25 239-263 29-53 (205)
482 1yrb_A ATP(GTP)binding protein 91.0 0.15 5.3E-06 49.0 4.1 27 237-263 13-39 (262)
483 2p5s_A RAS and EF-hand domain 91.0 0.14 4.9E-06 47.0 3.7 24 239-262 29-52 (199)
484 3t1o_A Gliding protein MGLA; G 91.0 0.12 4.3E-06 46.7 3.2 24 239-262 15-38 (198)
485 1z06_A RAS-related protein RAB 90.9 0.15 5E-06 46.4 3.7 25 239-263 21-45 (189)
486 2cxx_A Probable GTP-binding pr 90.9 0.12 4.2E-06 46.6 3.1 23 240-262 3-25 (190)
487 3cbq_A GTP-binding protein REM 90.9 0.11 3.8E-06 47.9 2.8 21 239-259 24-44 (195)
488 1mh1_A RAC1; GTP-binding, GTPa 90.8 0.13 4.6E-06 46.0 3.2 25 239-263 6-30 (186)
489 2xgj_A ATP-dependent RNA helic 90.7 1.2 4.1E-05 51.9 11.9 18 240-257 103-120 (1010)
490 1nij_A Hypothetical protein YJ 90.7 0.11 3.9E-06 52.2 2.9 24 239-262 5-28 (318)
491 2obl_A ESCN; ATPase, hydrolase 90.7 0.13 4.5E-06 52.5 3.4 26 239-264 72-97 (347)
492 2a5j_A RAS-related protein RAB 90.7 0.21 7.2E-06 45.4 4.5 24 239-262 22-45 (191)
493 3fmo_B ATP-dependent RNA helic 90.7 0.76 2.6E-05 45.6 9.0 17 239-255 132-148 (300)
494 3k53_A Ferrous iron transport 90.7 0.13 4.6E-06 50.1 3.4 24 239-262 4-27 (271)
495 3c5c_A RAS-like protein 12; GD 90.7 0.16 5.5E-06 46.3 3.7 25 239-263 22-46 (187)
496 3reg_A RHO-like small GTPase; 90.6 0.14 4.7E-06 46.8 3.2 25 239-263 24-48 (194)
497 2o8b_B DNA mismatch repair pro 90.6 0.22 7.5E-06 58.1 5.6 22 239-260 790-811 (1022)
498 1ksh_A ARF-like protein 2; sma 90.6 0.15 5.2E-06 46.0 3.5 23 238-260 18-40 (186)
499 2qnr_A Septin-2, protein NEDD5 90.6 0.12 4.1E-06 51.7 2.9 23 239-261 19-41 (301)
500 1e9r_A Conjugal transfer prote 90.6 0.16 5.5E-06 53.2 4.1 36 239-277 54-89 (437)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=1.9e-58 Score=533.59 Aligned_cols=454 Identities=28% Similarity=0.423 Sum_probs=400.9
Q ss_pred hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHH
Q 036633 5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYF 81 (550)
Q Consensus 5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~ 81 (550)
..+..||+++..+|+.||+|.|+|+|+.+++.+|+| |+++|+|||||||++|+ ++++...+.| ..++.++++
T Consensus 335 ~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r--~i~~~~lp~kai~lldea~a~~~~~~~~~p---~~l~~~~~~ 409 (854)
T 1qvr_A 335 EETISILRGLKEKYEVHHGVRISDSAIIAAATLSHR--YITERRLPDKAIDLIDEAAARLRMALESAP---EEIDALERK 409 (854)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH--HCCSSCTHHHHHHHHHHHHHHHHHTTTTHH---HHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhh--hcccccChHHHHHHHHHHHHHHHhhccCCc---hhHHHHHHH
Confidence 357899999999999999999999999999999999 99999999999999999 6788888999 999999999
Q ss_pred HHHHHHHHHHHhhccCCchhhhhhHHHHHHHH---HHHHHHHHHHHHH---------HHHHHHHHHHHhHHHhhhhccHH
Q 036633 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNEL---KDAFFELVSFVKL---------RMQVEYDDFVSCVHDAKRVKDYS 149 (550)
Q Consensus 82 ~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 149 (550)
+.+++.|+.++.++ .+..+..+ +.++++++ +.++..+..+|+. .++++++.++.+++.+.+.++++
T Consensus 410 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (854)
T 1qvr_A 410 KLQLEIEREALKKE-KDPDSQER-LKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLN 487 (854)
T ss_dssp HHHHHHHHHHHSSC-SSHHHHSC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHH
T ss_pred HHHHHHHHHHHHhc-cccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHH
Confidence 99999999999988 66667777 77787777 8889999999982 44566667777778888888888
Q ss_pred HHHH-------HHHHHHhhhhc---C----CCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHH
Q 036633 150 KILD-------QIDARVHGKFK---E----KLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAI 215 (550)
Q Consensus 150 ~~~~-------~~~~~~~~~~~---~----~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai 215 (550)
++.+ .+++++..++. . ...|+.+++..+|++|+|+|+.++...+.+++..++..+.+.|+||+.++
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~ 567 (854)
T 1qvr_A 488 RAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAI 567 (854)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHH
Confidence 8754 45566655532 1 56799999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHH----
Q 036633 216 DVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFF---- 290 (550)
Q Consensus 216 ~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~li---- 290 (550)
..+..++.+. ++|+.+|++| +++||+||||||||++|++||+.+++ ...+|+++||+++++.+.++.++
T Consensus 568 ~~l~~~i~~~---~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~---~~~~~i~i~~~~~~~~~~~s~l~g~~~ 641 (854)
T 1qvr_A 568 RAVADAIRRA---RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---TEEAMIRIDMTEYMEKHAVSRLIGAPP 641 (854)
T ss_dssp HHHHHHHHHH---GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS---SGGGEEEECTTTCCSSGGGGGC-----
T ss_pred HHHHHHHHHH---hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---CCCcEEEEechhccchhHHHHHcCCCC
Confidence 9999999999 9999999999 89999999999999999999999988 77799999999999999988887
Q ss_pred --------hHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHh
Q 036633 291 --------DSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEV 361 (550)
Q Consensus 291 --------G~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~ 361 (550)
|.++++++.+|++|||||||+++|+++++.|+++|++| + ++++ |+.+||+|++||+|||.|+..+...
T Consensus 642 ~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~--~-~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~ 718 (854)
T 1qvr_A 642 GYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDG--R-LTDSHGRTVDFRNTVIILTSNLGSPLILEG 718 (854)
T ss_dssp ---------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTT--E-ECCSSSCCEECTTEEEEEECCTTHHHHHHH
T ss_pred CCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccC--c-eECCCCCEeccCCeEEEEecCcChHHHhhh
Confidence 37889999999999999999999999999999999999 8 9999 9999999999999999998776542
Q ss_pred hhh-----hhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHH
Q 036633 362 MLT-----ATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI 436 (550)
Q Consensus 362 ~~~-----~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L 436 (550)
..+ .....+.+.+...|+|+|++|||.++.|. ||+.+++..|+..++.++..++...++ .+.++++++++|
T Consensus 719 ~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~---pl~~edi~~i~~~~l~~~~~~~~~~~~-~~~~~~~a~~~L 794 (854)
T 1qvr_A 719 LQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFR---PLTKEQIRQIVEIQLSYLRARLAEKRI-SLELTEAAKDFL 794 (854)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCC---CCCHHHHHHHHHHHHHHHHHHHHTTTC-EEEECHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCC---CCCHHHHHHHHHHHHHHHHHHHHhCCc-eEEECHHHHHHH
Confidence 111 11234445568899999999999999999 999999999999999999999888888 889999999999
Q ss_pred HhcCc-ccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCccccccc
Q 036633 437 ASNAA-RKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYNHQSKE 480 (550)
Q Consensus 437 ~~~~~-~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~ 480 (550)
+.++| +.+ |+|+|+++|++ .+++..++.|.+..++.+.+++.
T Consensus 795 ~~~~~~~~g--n~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 840 (854)
T 1qvr_A 795 AERGYDPVF--GARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVG 840 (854)
T ss_dssp HHHHCBTTT--BTSTHHHHHHHHTHHHHHHHHHHTSSCSSCEEEEECC
T ss_pred HHcCCCCCC--ChHHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEEE
Confidence 99999 444 55999999999 99999999999988888777654
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-54 Score=496.54 Aligned_cols=410 Identities=23% Similarity=0.385 Sum_probs=335.9
Q ss_pred hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHH
Q 036633 5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYF 81 (550)
Q Consensus 5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~ 81 (550)
..+..||+++.++|+.||+|.|+|+|+.+++.+|+| |+++|++||||||++|+ ++++...+.| ..++.++++
T Consensus 328 ~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~--~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p---~~~~~l~~~ 402 (758)
T 3pxi_A 328 DESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDR--YISDRFLPDKAIDLIDEAGSKVRLRSFTTP---PNLKELEQK 402 (758)
T ss_dssp HHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHH--SSCCSCTTHHHHHHHHHHHHHHHHHTTC-----CCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc--ccccCcCCcHHHHHHHHHHHHHHhhccCCC---cchhhHHHH
Confidence 357899999999999999999999999999999999 99999999999999999 5677888899 899999999
Q ss_pred HHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccHHHHHHHHHHHHhh
Q 036633 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHG 161 (550)
Q Consensus 82 ~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (550)
+.+++.|.+.+.+. .+...... +.....+++.+++.+...|.. +
T Consensus 403 ~~~~~~~~~~~~~~-~~~~~~~~-l~~~~~~~~~~l~~~~~~~~~-------------------------------~--- 446 (758)
T 3pxi_A 403 LDEVRKEKDAAVQS-QEFEKAAS-LRDTEQRLREQVEDTKKSWKE-------------------------------K--- 446 (758)
T ss_dssp HHHHHHHHHHHHHH-CCSHHHHH-HHHHHHHHHHHHHHHHSGGGH-------------------------------H---
T ss_pred HHHHHHHHHHHHhC-cCHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------------------------------h---
Confidence 99999998887765 44332222 222222223333333333331 0
Q ss_pred hhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-ee
Q 036633 162 KFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GL 240 (550)
Q Consensus 162 ~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~ 240 (550)
.......|+.++|+.++++|+|+|+..+...+.+.+..++..|...|+||++++..+..++.+. ++|+.+|++| ++
T Consensus 447 ~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~---~~~~~~~~~p~~~ 523 (758)
T 3pxi_A 447 QGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRA---RAGLKDPKRPIGS 523 (758)
T ss_dssp HHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHH---TTTCSCTTSCSEE
T ss_pred hcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHH---HcccCCCCCCceE
Confidence 0013567999999999999999999999988888889999999999999999999999999999 9999999999 89
Q ss_pred EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHH
Q 036633 241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNL 320 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~ 320 (550)
+||+||||||||++|+++|+.+++ +..+|+++||++|++.+..+ .|.++++++.+|++|||||||+++|+++++.
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l~~---~~~~~i~i~~s~~~~~~~~~--~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~ 598 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESIFG---DEESMIRIDMSEYMEKHSTS--GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNI 598 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHS---CTTCEEEEEGGGGCSSCCCC-----CHHHHHHCSSSEEEEECGGGSCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC---CCcceEEEechhcccccccc--cchhhHHHHhCCCeEEEEeCccccCHHHHHH
Confidence 999999999999999999999988 88899999999999988776 5688999999999999999999999999999
Q ss_pred HHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC
Q 036633 321 LLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL 399 (550)
Q Consensus 321 Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~ 399 (550)
|++++++| + ++++ |+.+++.|++||+|||.+... ...+...+.+.|+|+|++|||.+|.|. ||+
T Consensus 599 Ll~~le~g--~-~~~~~g~~~~~~~~~iI~ttn~~~~~---------~~~~~~~~~~~f~p~l~~Rl~~~i~~~---~l~ 663 (758)
T 3pxi_A 599 LLQVLEDG--R-LTDSKGRTVDFRNTILIMTSNVGASE---------KDKVMGELKRAFRPEFINRIDEIIVFH---SLE 663 (758)
T ss_dssp HHHHHHHS--B-CC-----CCBCTTCEEEEEESSSTTC---------CHHHHHHHHHHSCHHHHTTSSEEEECC-----C
T ss_pred HHHHhccC--e-EEcCCCCEeccCCeEEEEeCCCChhh---------HHHHHHHHHhhCCHHHHhhCCeEEecC---CCC
Confidence 99999999 8 9999 999999999999999987643 123344556779999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCcc
Q 036633 400 DTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYN 475 (550)
Q Consensus 400 ~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~ 475 (550)
.+++..|+..++..+..++...++ .+.++++++++|++.+| +.+|+ |+|+++|++ .++++.++.|.+..++.+
T Consensus 664 ~~~~~~i~~~~l~~~~~~~~~~~~-~~~~~~~a~~~l~~~~~~~~~~~--R~L~~~i~~~v~~~l~~~~l~~~~~~~~~~ 740 (758)
T 3pxi_A 664 KKHLTEIVSLMSDQLTKRLKEQDL-SIELTDAAKAKVAEEGVDLEYGA--RPLRRAIQKHVEDRLSEELLRGNIHKGQHI 740 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC-EEEECHHHHHHHHGGGCCTTTTT--TTHHHHHHHHTHHHHHHHHHTTCSCSSSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-eEEECHHHHHHHHHhCCCCCCCC--hHHHHHHHHHHHHHHHHHHHcCCCCCCCEE
Confidence 999999999999999999988888 89999999999999888 55555 999999999 999999999999988888
Q ss_pred ccccch
Q 036633 476 HQSKEE 481 (550)
Q Consensus 476 ~i~~~~ 481 (550)
.+++.+
T Consensus 741 ~~~~~~ 746 (758)
T 3pxi_A 741 VLDVED 746 (758)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 777653
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=6.9e-50 Score=457.05 Aligned_cols=363 Identities=24% Similarity=0.328 Sum_probs=317.8
Q ss_pred hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHhhhhhcccCCCCchHHHHHHHHHHHH
Q 036633 5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYFLRR 84 (550)
Q Consensus 5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~~~~~~~~~~~~~~~~l~~l~~~~~~ 84 (550)
..+..||+++...|+.||+|.|+++|+.+++.+|.| |+++|++||||||++|+..+.... .|
T Consensus 352 ~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~--~i~~~~lp~~~i~lld~a~~~~~~-~~--------------- 413 (758)
T 1r6b_X 352 EETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK--YINDRHLPDKAIDVIDEAGARARL-MP--------------- 413 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH--HCTTSCTTHHHHHHHHHHHHHHHH-SS---------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh--hcccccCchHHHHHHHHHHHHHhc-cc---------------
Confidence 457899999999999999999999999999999999 999999999999999993222100 01
Q ss_pred HHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccHHHHHHHHHHHHhhhhc
Q 036633 85 AVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFK 164 (550)
Q Consensus 85 ~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (550)
. ..
T Consensus 414 ----------~-------------------------------------------------------------------~~ 416 (758)
T 1r6b_X 414 ----------V-------------------------------------------------------------------SK 416 (758)
T ss_dssp ----------S-------------------------------------------------------------------CC
T ss_pred ----------c-------------------------------------------------------------------cc
Confidence 0 00
Q ss_pred CCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEE
Q 036633 165 EKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLF 243 (550)
Q Consensus 165 ~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf 243 (550)
....|+.++|+++++.|+|+|+..+..++...+..++..|...|+||++++..+..++... ++|+.+|++| +++||
T Consensus 417 ~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~---~~g~~~~~~p~~~~ll 493 (758)
T 1r6b_X 417 RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA---RAGLGHEHKPVGSFLF 493 (758)
T ss_dssp CCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH---HTTCSCTTSCSEEEEE
T ss_pred cCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH---hcccCCCCCCceEEEE
Confidence 1356999999999999999999999999999999999999999999999999999999998 9999999999 99999
Q ss_pred eccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------HHHHHHHhCCCCeEEecccc
Q 036633 244 AGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------SLAALVKKRPYSVVLFDKIE 311 (550)
Q Consensus 244 ~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------~lt~al~~~p~~VlllDEIe 311 (550)
+||||||||++|+++|+.+.. +|+++||++|++.++++.++| .+++++++.|++|||||||+
T Consensus 494 ~G~~GtGKT~la~~la~~l~~------~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~ 567 (758)
T 1r6b_X 494 AGPTGVGKTEVTVQLSKALGI------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIE 567 (758)
T ss_dssp ECSTTSSHHHHHHHHHHHHTC------EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGG
T ss_pred ECCCCCcHHHHHHHHHHHhcC------CEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcc
Confidence 999999999999999999966 999999999999988888776 57899999999999999999
Q ss_pred ccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhh----hhhhHhhHHHHhccCCChhhhhhc
Q 036633 312 KANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVM----LTATYGRVNEVTGSLFKPSLLKLL 386 (550)
Q Consensus 312 ka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~----~~~~~~~~~~~l~~~f~p~ll~Ri 386 (550)
++|+++++.|++++++| + ++|+ |+.+||+|++||+|||.+...+.... .......+.+.+++.|+|+|++||
T Consensus 568 ~~~~~~~~~Ll~~le~~--~-~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~ 644 (758)
T 1r6b_X 568 KAHPDVFNILLQVMDNG--T-LTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRL 644 (758)
T ss_dssp GSCHHHHHHHHHHHHHS--E-EEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTC
T ss_pred ccCHHHHHHHHHHhcCc--E-EEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhC
Confidence 99999999999999999 8 9999 99999999999999999876554311 011123445566779999999999
Q ss_pred cceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc---hhhHH
Q 036633 387 DKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ---RPSAD 462 (550)
Q Consensus 387 d~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~---~~la~ 462 (550)
|.+|.|. ||+.+++..|+..++.++..++...++ .+.++++++++|+.++| +++|+ |+|+++|++ ++++.
T Consensus 645 ~~~i~~~---~l~~~~~~~i~~~~l~~~~~~~~~~~~-~~~~~~~a~~~l~~~~~~~~~g~--R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 645 DNIIWFD---HLSTDVIHQVVDKFIVELQVQLDQKGV-SLEVSQEARNWLAEKGYDRAMGA--RPMARVIQDNLKKPLAN 718 (758)
T ss_dssp SEEEECC---CCCHHHHHHHHHHHHHHHHHHHHHTTE-EEEECHHHHHHHHHHHCBTTTBT--TTHHHHHHHHHTHHHHH
T ss_pred CcceeeC---CCCHHHHHHHHHHHHHHHHHHHHHCCc-EEEeCHHHHHHHHHhCCCcCCCc--hHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999998888887 88999999999999999 88888 999999999 88999
Q ss_pred HHHhhhhcCCCccccccc
Q 036633 463 HVIDKFLRDAGYNHQSKE 480 (550)
Q Consensus 463 ~~l~~~~~~~~~~~i~~~ 480 (550)
.++.|++..++.+.+++.
T Consensus 719 ~~l~~~~~~~~~~~~~~~ 736 (758)
T 1r6b_X 719 ELLFGSLVDGGQVTVALD 736 (758)
T ss_dssp HHHHSTTTTCEEEEEEEE
T ss_pred HHHcCcCCCCCEEEEEEe
Confidence 999999988887777664
No 4
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=100.00 E-value=3.2e-36 Score=307.29 Aligned_cols=276 Identities=30% Similarity=0.483 Sum_probs=244.2
Q ss_pred chHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCC
Q 036633 192 KPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDN 270 (550)
Q Consensus 192 ~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~ 270 (550)
++.+.+..++..|.+.++||+.+++.+..++... +.|+..|++| ++++|+||||||||++|+++|+.+.. ...
T Consensus 3 ~~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~---~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~---~~~ 76 (311)
T 4fcw_A 3 GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA---RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---TEE 76 (311)
T ss_dssp HHHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHH---HHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS---CGG
T ss_pred cHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH---hcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC---CCc
Confidence 4678899999999999999999999999999998 8999999999 89999999999999999999999987 667
Q ss_pred ceeEEecCCCCchhhhhhHHh------------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-C
Q 036633 271 HLIHFDMGNYTELESIKHFFD------------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-I 337 (550)
Q Consensus 271 ~li~id~s~~~~~~~~s~liG------------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g 337 (550)
+++.+||+.+.+....+.++| .+++++..+|++||||||++++++++++.|+++++++ . +++. |
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~--~-~~~~~~ 153 (311)
T 4fcw_A 77 AMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDG--R-LTDSHG 153 (311)
T ss_dssp GEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHS--E-EECTTS
T ss_pred ceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcC--E-EEcCCC
Confidence 899999999998888888874 7889999999999999999999999999999999999 7 8888 9
Q ss_pred eEeecCCeEEEEeCCCChHHHHHhhhhh-h----HhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633 338 AAFDLTNTLIIMTSDLKDEQVYEVMLTA-T----YGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACE 412 (550)
Q Consensus 338 ~~vd~~~~iiI~TsN~g~~~~~~~~~~~-~----~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~ 412 (550)
+.+++++++||+|||.+...+....... . ...+.+.+...|+|+|++||+.++.|. |++.+++..|+..++.
T Consensus 154 ~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~---p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 154 RTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFR---PLTKEQIRQIVEIQMS 230 (311)
T ss_dssp CEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECC---CCCHHHHHHHHHHHTH
T ss_pred CEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeC---CCCHHHHHHHHHHHHH
Confidence 9999999999999999887776644321 1 233333446789999999999999999 9999999999999999
Q ss_pred HHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCccccccch
Q 036633 413 ETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYNHQSKEE 481 (550)
Q Consensus 413 ~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~~ 481 (550)
++...+...+. .+.++++++++|++++|...| |+|.|+++|++ .+++..++.+.+..++.+.+++++
T Consensus 231 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~g-n~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~i~i~~~~ 300 (311)
T 4fcw_A 231 YLRARLAEKRI-SLELTEAAKDFLAERGYDPVF-GARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGP 300 (311)
T ss_dssp HHHHHHHTTTC-EEEECHHHHHHHHHHSCBTTT-BTTTHHHHHHHHTHHHHHHHHHHTSSCTTCEEEEEECS
T ss_pred HHHHHHHhCCc-EEEeCHHHHHHHHHhCCCccC-CchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEEC
Confidence 99988877777 889999999999999983235 67999999999 789999999999888888777664
No 5
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.96 E-value=1.5e-29 Score=264.51 Aligned_cols=276 Identities=19% Similarity=0.180 Sum_probs=184.4
Q ss_pred HHHHhhhhcCcccCcHHHHHHHHHHHhcchh-hhcCCCCc--CCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCce
Q 036633 197 YMRVQGRLKKRVFGQNDAIDVIFEALTKPKA-AKKGLSSR--RQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHL 272 (550)
Q Consensus 197 l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~-~~~gl~~~--~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~l 272 (550)
...+...|.+.|+||+.+++.+..++..... .+.+.... ..| .++||+||||||||++|++||+.+.. +|
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~------~~ 79 (363)
T 3hws_A 6 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV------PF 79 (363)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC------CE
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC------CE
Confidence 3466778888899999999999998853310 02222211 123 79999999999999999999999877 99
Q ss_pred eEEecCCCCchhhhhhH-HhHHHHHHHh-------CCCCeEEeccccccCHH--------------HHHHHHHhhhhccc
Q 036633 273 IHFDMGNYTELESIKHF-FDSLAALVKK-------RPYSVVLFDKIEKANSS--------------ILNLLLKILKTDFN 330 (550)
Q Consensus 273 i~id~s~~~~~~~~s~l-iG~lt~al~~-------~p~~VlllDEIeka~~~--------------v~~~Ll~~ld~g~~ 330 (550)
+.++|+.+.+...+..- -+.++..+.. .+++|||||||+++++. +++.||++|+ |..
T Consensus 80 ~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~ 158 (363)
T 3hws_A 80 TMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GTV 158 (363)
T ss_dssp EEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH-CC-
T ss_pred EEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhc-Cce
Confidence 99999987644322111 1134444433 34579999999999987 9999999999 521
Q ss_pred cccccC-CeEeecCCeEEEEeCCC---------ChHHHHHhhhh-----------------hhHhhH------HHHhccC
Q 036633 331 RKATRG-IAAFDLTNTLIIMTSDL---------KDEQVYEVMLT-----------------ATYGRV------NEVTGSL 377 (550)
Q Consensus 331 ~~l~d~-g~~vd~~~~iiI~TsN~---------g~~~~~~~~~~-----------------~~~~~~------~~~l~~~ 377 (550)
..+++. |+.+++.++++|+|||. +.+.+...... .....+ .......
T Consensus 159 ~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~ 238 (363)
T 3hws_A 159 AAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 238 (363)
T ss_dssp ---------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHT
T ss_pred eeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcC
Confidence 214555 77777777777777776 66655442100 000111 1222334
Q ss_pred CChhhhhhccceeEecCCCCCCHHHHHHHHHH----HHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHH
Q 036633 378 FKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW----ACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLK 452 (550)
Q Consensus 378 f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~----~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~ 452 (550)
|+|+|++|||.++.|. |++.+++..|+.. .+.++...+...+. .+.++++++++|++++| ..+|+ |+|+
T Consensus 239 ~~~~l~~R~~~~~~~~---pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~-~l~~~~~a~~~L~~~~~~~~~ga--R~L~ 312 (363)
T 3hws_A 239 LIPEFIGRLPVVATLN---ELSEEALIQILKEPKNALTKQYQALFNLEGV-DLEFRDEALDAIAKKAMARKTGA--RGLR 312 (363)
T ss_dssp CCHHHHTTCCEEEECC---CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTC-EEEECHHHHHHHHHHHHHTTCTT--TTHH
T ss_pred CCHHHhcccCeeeecC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc-eEEECHHHHHHHHHhhcCCccCc--hHHH
Confidence 9999999999999999 9999999999998 77777777777788 89999999999999888 66666 9999
Q ss_pred HHHcchhhHHHHHhhhhcCC-Cccccccchhhccc
Q 036633 453 RWMDQRPSADHVIDKFLRDA-GYNHQSKEETEDME 486 (550)
Q Consensus 453 ~~i~~~~la~~~l~~~~~~~-~~~~i~~~~~~~~~ 486 (550)
++|++ .+...+.......+ ..+.|+.+......
T Consensus 313 ~~ie~-~~~~~l~~~~~~~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 313 SIVEA-ALLDTMYDLPSMEDVEKVVIDESVIDGQS 346 (363)
T ss_dssp HHHHH-HHHHHHHSTTTCCCSEEEECHHHHTTCCS
T ss_pred HHHHH-HHHHHHHhcccccCCceeEEcHHHHhCcC
Confidence 99997 44444443222111 34555555554444
No 6
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.94 E-value=9.8e-27 Score=244.28 Aligned_cols=274 Identities=17% Similarity=0.147 Sum_probs=178.9
Q ss_pred HHHHHhhhhcCcccCcHHHHHHHHHHHh----cchhhhcCC-------CC----------cCCC-eeEEEeccCCCcHHH
Q 036633 196 RYMRVQGRLKKRVFGQNDAIDVIFEALT----KPKAAKKGL-------SS----------RRQL-GLFLFAGPNCSGKAE 253 (550)
Q Consensus 196 ~l~~l~~~L~~~viGQ~~ai~~i~~~l~----~~~~~~~gl-------~~----------~~~p-~~lLf~Gp~GvGKT~ 253 (550)
++..+.+.|.+.|+||++|++.+..++. +. ++|+ .+ ...+ .+++|+||||||||+
T Consensus 11 ~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~---~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~ 87 (376)
T 1um8_A 11 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRL---SFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTL 87 (376)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHH
T ss_pred CHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHH---HhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHH
Confidence 3567888999999999999999998883 33 3333 11 1123 789999999999999
Q ss_pred HHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH-HhHHHHHH-------HhCCCCeEEeccccccCHH---------
Q 036633 254 LAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF-FDSLAALV-------KKRPYSVVLFDKIEKANSS--------- 316 (550)
Q Consensus 254 lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l-iG~lt~al-------~~~p~~VlllDEIeka~~~--------- 316 (550)
+|+++|+.+.. +++.+||+.+........- -+.+...+ ...+++|||||||+++++.
T Consensus 88 la~~la~~l~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~ 161 (376)
T 1um8_A 88 MAQTLAKHLDI------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRD 161 (376)
T ss_dssp HHHHHHHHTTC------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC------------
T ss_pred HHHHHHHHhCC------CEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecc
Confidence 99999999866 9999999987643221111 11233332 2346789999999999998
Q ss_pred -----HHHHHHHhhhhccccccccC-CeE--------eecCCeEEEEeCCCC-hHHHHH-hh-----h--hhh-------
Q 036633 317 -----ILNLLLKILKTDFNRKATRG-IAA--------FDLTNTLIIMTSDLK-DEQVYE-VM-----L--TAT------- 366 (550)
Q Consensus 317 -----v~~~Ll~~ld~g~~~~l~d~-g~~--------vd~~~~iiI~TsN~g-~~~~~~-~~-----~--~~~------- 366 (550)
+++.|+++++.+.+. +.+. |+. ++.+|.++|+|+|.. .+.... .. + ...
T Consensus 162 ~~~~~~~~~Ll~~le~~~~~-~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~ 240 (376)
T 1um8_A 162 VSGEGVQQALLKIVEGSLVN-IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQE 240 (376)
T ss_dssp --CHHHHHHHHHHHHCCEEC----------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTT
T ss_pred cchHHHHHHHHHHhhcccee-cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchh
Confidence 999999999977333 3444 544 445666666666631 111100 00 0 000
Q ss_pred ----HhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH----HHHHHHHHHhccCCCccccCCHHHHHHHHh
Q 036633 367 ----YGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE----WACEETKRRNNDSKAVIVCPSTSALVHIAS 438 (550)
Q Consensus 367 ----~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~----~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~ 438 (550)
.-.........|+|+|++||+.++.|. ||+.+++..|+. ..+.++...+...+. .+.++++++++|+.
T Consensus 241 ~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~---~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~ 316 (376)
T 1um8_A 241 AILHLVQTHDLVTYGLIPELIGRLPVLSTLD---SISLEAMVDILQKPKNALIKQYQQLFKMDEV-DLIFEEEAIKEIAQ 316 (376)
T ss_dssp TSGGGCCHHHHHHTTCCHHHHTTCCEEEECC---CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTC-EEEECHHHHHHHHH
T ss_pred HHHhhcCHHHHhhcCCChHHhcCCCceeecc---CCCHHHHHHHHhhhHHHHHHHHHHHHhhcCc-eEEECHHHHHHHHH
Confidence 000011123468999999999999999 999999999998 466666666666777 88999999999999
Q ss_pred cCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhcc
Q 036633 439 NAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDM 485 (550)
Q Consensus 439 ~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~ 485 (550)
++|+..| |+|.|+++|++ .+...+....-...+.+.|+.+.....
T Consensus 317 ~~~~~~~-~~R~L~~~le~-~~~~~~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 317 LALERKT-GARGLRAIIED-FCLDIMFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHHHTTC-TGGGHHHHHHH-HHHHHHHTGGGGTTSEEEECHHHHTTS
T ss_pred Hhccccc-CcHHHHHHHHH-HHHHHHhhccCCCCCEEEEeHHHhcCC
Confidence 8883334 55999999997 444444433222345556666555443
No 7
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.93 E-value=1.9e-25 Score=228.03 Aligned_cols=280 Identities=15% Similarity=0.144 Sum_probs=198.9
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++|++.++..+...+... . ..+.++||+||||||||++|++|+..+.. ...+|+.+||+.+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~---a------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~---~~~~~v~v~~~~~~~~l~ 69 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV---A------PSDATVLIHGDSGTGKELVARALHACSAR---SDRPLVTLNCAALNESLL 69 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH---C------STTSCEEEESCTTSCHHHHHHHHHHHSSC---SSSCCCEEECSSCCHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH---h------CCCCcEEEECCCCchHHHHHHHHHHhCcc---cCCCeEEEeCCCCChHHH
Confidence 46899999999999998875 1 13378999999999999999999999877 677999999999987776
Q ss_pred hhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633 286 IKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 286 ~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~ 353 (550)
.+.++| .++.+ +....+++||||||+.+++++|..|+++++++ . +... +....-.++.||+|||.
T Consensus 70 ~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~--~-~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 70 ESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQER--E-VQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp HHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSS--B-CCBTTBCCCCBCCCEEEEEESS
T ss_pred HHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcC--E-eeecCCcccccCCeEEEEecCc
Confidence 777776 22222 22234589999999999999999999999999 6 4433 33333345679999998
Q ss_pred ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC--HHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL--DTTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~--~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
....... ...|+++|++|++ ++.+. .|||+ .+|+..++..++..+...+... ...++++
T Consensus 147 ~l~~~v~--------------~g~fr~~L~~Rl~-~~~i~-lPpL~eR~edi~~l~~~~l~~~~~~~~~~---~~~~s~~ 207 (304)
T 1ojl_A 147 DLAEEVS--------------AGRFRQDLYYRLN-VVAIE-MPSLRQRREDIPLLADHFLRRFAERNRKV---VKGFTPQ 207 (304)
T ss_dssp CHHHHHH--------------HTSSCHHHHHHHS-SEEEE-CCCSGGGGGGHHHHHHHHHHHHHHHTTCC---CCCBCHH
T ss_pred cHHHHHH--------------hCCcHHHHHhhcC-eeEEe-ccCHHHhHhhHHHHHHHHHHHHHHHhccC---ccCCCHH
Confidence 7544332 3689999999995 55544 23898 6899999999998887765443 3478999
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCcccccccccC-CC
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWWEESTE-GL 510 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~~~~~~-~l 510 (550)
++++|..++|| | |+|.|++++++ .+. +. .++. |+.+. ++..... .. .. ...+ ... .+
T Consensus 208 a~~~L~~~~wp--G-nvReL~~~l~~-~~~---~~----~~~~--i~~~~---l~~~~~~--~~-~~--~~~~-l~~~~~ 265 (304)
T 1ojl_A 208 AMDLLIHYDWP--G-NIRELENAIER-AVV---LL----TGEY--ISERE---LPLAIAA--TP-IK--TEYS-GEIQPL 265 (304)
T ss_dssp HHHHHHHCCCS--S-HHHHHHHHHHH-HHH---HC----CSSS--BCGGG---SCGGGC------------CC-SSCCCH
T ss_pred HHHHHHcCCCC--C-CHHHHHHHHHH-HHH---hC----CCCc--ccHHh---hhhhhcc--CC-Cc--cCCC-cchhhH
Confidence 99999999886 7 99999999997 221 11 1222 22222 2211100 00 00 0000 001 23
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036633 511 SLEELKKYMDSLEALRNNVAIKLEEMMMRRA 541 (550)
Q Consensus 511 sl~eleq~~~ale~l~~nl~~~a~~l~~~~~ 541 (550)
...|.+.+..+|+...+|....|+.|.+.+.
T Consensus 266 ~~~e~~~i~~~l~~~~gn~~~aA~~Lgi~r~ 296 (304)
T 1ojl_A 266 VDVEKEVILAALEKTGGNKTEAARQLGITRK 296 (304)
T ss_dssp HHHHHHHHHHHHHTTTTCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHH
Confidence 3456667788999999999999999988764
No 8
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.92 E-value=2.1e-24 Score=236.98 Aligned_cols=292 Identities=17% Similarity=0.198 Sum_probs=199.4
Q ss_pred HHHHHHHHHhhhhcCCCcc-CHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhh
Q 036633 151 ILDQIDARVHGKFKEKLAV-DVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAK 229 (550)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~v-~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~ 229 (550)
+.+.+++++.+++...... ....+.+.+..++++||.+...+. ..+..+...|.+.++|+++++..+...+... .
T Consensus 26 ~~~~~~~el~~l~~~~~~~~e~~~~~~~l~~~~~lp~~~~~~~~-~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~---~ 101 (543)
T 3m6a_A 26 VKETALKELNRYEKIPSSSAESSVIRNYIDWLVALPWTDETDDK-LDLKEAGRLLDEEHHGLEKVKERILEYLAVQ---K 101 (543)
T ss_dssp HHHHHHHHHHSSCCCSSSCTTTTHHHHHHHHHHHSCSSCCCCCC-CCTTTGGGTHHHHCSSCHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHhcCCCCCchHhHHHHHHHHHhcCCCCcccccc-ccHHHHHHHHHHHhccHHHHHHHHHHHHHHH---H
Confidence 3446778888887654433 344566777778999998876543 3366778889999999999999988776654 3
Q ss_pred cCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh----hhHHh----HHHHHHHhC-
Q 036633 230 KGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI----KHFFD----SLAALVKKR- 300 (550)
Q Consensus 230 ~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~----s~liG----~lt~al~~~- 300 (550)
..... .+.+++|+||||||||++|++||..+.. ++.+++|+.+.+.... ...+| .+...+...
T Consensus 102 ~~~~~--~g~~vll~Gp~GtGKTtlar~ia~~l~~------~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~ 173 (543)
T 3m6a_A 102 LTKSL--KGPILCLAGPPGVGKTSLAKSIAKSLGR------KFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAG 173 (543)
T ss_dssp HSSSC--CSCEEEEESSSSSSHHHHHHHHHHHHTC------EEEEECCCC--------------------CHHHHHHTTC
T ss_pred hcccC--CCCEEEEECCCCCCHHHHHHHHHHhcCC------CeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhh
Confidence 22222 2379999999999999999999999977 8999999887542211 12333 222233322
Q ss_pred -CCCeEEeccccccCHH----HHHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHH
Q 036633 301 -PYSVVLFDKIEKANSS----ILNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEV 373 (550)
Q Consensus 301 -p~~VlllDEIeka~~~----v~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~ 373 (550)
..+|+|||||++++++ .++.|+++++++++..+.+. +..+++.+++||+|||..
T Consensus 174 ~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~------------------- 234 (543)
T 3m6a_A 174 KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNL------------------- 234 (543)
T ss_dssp SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSST-------------------
T ss_pred ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcc-------------------
Confidence 3359999999999998 56999999998754435555 778899999999999974
Q ss_pred hccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc--cccCCHHHHHHHHhcCcccCCCcccHH
Q 036633 374 TGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV--IVCPSTSALVHIASNAARKYGQNGEGL 451 (550)
Q Consensus 374 l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~--~l~~~~~a~~~L~~~~~~~~GaN~R~L 451 (550)
..|+|+|++|| .+|.|. +++.++...|+..++.. ..+...++. .+.++++++.+|+. .|...| |+|.|
T Consensus 235 --~~l~~aL~~R~-~vi~~~---~~~~~e~~~Il~~~l~~--~~~~~~~~~~~~i~i~~~~l~~l~~-~~~~~~-~vR~L 304 (543)
T 3m6a_A 235 --ATIPGPLRDRM-EIINIA---GYTEIEKLEIVKDHLLP--KQIKEHGLKKSNLQLRDQAILDIIR-YYTREA-GVRSL 304 (543)
T ss_dssp --TTSCHHHHHHE-EEEECC---CCCHHHHHHHHHHTHHH--HHHHHTTCCGGGCEECHHHHHHHHH-HHCCCS-SSHHH
T ss_pred --ccCCHHHHhhc-ceeeeC---CCCHHHHHHHHHHHHHH--HHHHHcCCCcccccCCHHHHHHHHH-hCChhh-chhHH
Confidence 47899999999 589999 99999999999988733 222223321 46889999999887 332224 67999
Q ss_pred HHHHcc--hhhHHHHHhhhhcCCCccccccchhhccc
Q 036633 452 KRWMDQ--RPSADHVIDKFLRDAGYNHQSKEETEDME 486 (550)
Q Consensus 452 ~~~i~~--~~la~~~l~~~~~~~~~~~i~~~~~~~~~ 486 (550)
++.|++ ...+..++.+ ..+...|+.+......
T Consensus 305 ~~~i~~~~~~aa~~~~~~---~~~~~~It~~~l~~~L 338 (543)
T 3m6a_A 305 ERQLAAICRKAAKAIVAE---ERKRITVTEKNLQDFI 338 (543)
T ss_dssp HHHHHHHHHHHHHHHHTT---CCSCCEECTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhc---CCcceecCHHHHHHHh
Confidence 999997 3333333332 2344556665554443
No 9
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.92 E-value=1e-24 Score=221.39 Aligned_cols=256 Identities=18% Similarity=0.163 Sum_probs=184.0
Q ss_pred HHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC----cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633 198 MRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS----RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI 273 (550)
Q Consensus 198 ~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~----~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li 273 (550)
..+...|.+.|+||+.+++.+..++.... .+.++.. ...|.+++|+||||||||++|+++|+.+.. +++
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~------~~~ 79 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRW-RRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA------PFI 79 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHH-HTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC------CEE
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHH-hhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC------CEE
Confidence 46778889999999999999998887620 0223321 123479999999999999999999999866 899
Q ss_pred EEecCCCCchhhhh----hHHhHHHH----HHHh-CCCCeEEeccccccCHHH------------HHHHHHhhhhccccc
Q 036633 274 HFDMGNYTELESIK----HFFDSLAA----LVKK-RPYSVVLFDKIEKANSSI------------LNLLLKILKTDFNRK 332 (550)
Q Consensus 274 ~id~s~~~~~~~~s----~liG~lt~----al~~-~p~~VlllDEIeka~~~v------------~~~Ll~~ld~g~~~~ 332 (550)
.++|+.+.+...+. ..+..+.. .+.. .+++||||||+++++++. ++.|+++++++ .
T Consensus 80 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~--~- 156 (310)
T 1ofh_A 80 KVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGS--T- 156 (310)
T ss_dssp EEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCC--E-
T ss_pred EEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCC--e-
Confidence 99999886532211 11111111 1111 235899999999998764 99999999988 5
Q ss_pred cccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH----
Q 036633 333 ATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE---- 408 (550)
Q Consensus 333 l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~---- 408 (550)
+......++..+++||+|+|..... ...|+|+|++||+.+|.|. |++.+++..|+.
T Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~~l~~~l~~R~~~~i~~~---~~~~~~~~~il~~~~~ 216 (310)
T 1ofh_A 157 VSTKHGMVKTDHILFIASGAFQVAR-----------------PSDLIPELQGRLPIRVELT---ALSAADFERILTEPHA 216 (310)
T ss_dssp EEETTEEEECTTCEEEEEECCSSSC-----------------GGGSCHHHHHTCCEEEECC---CCCHHHHHHHHHSSTT
T ss_pred EecccccccCCcEEEEEcCCcccCC-----------------cccCCHHHHhhCCceEEcC---CcCHHHHHHHHHhhHH
Confidence 5555225677889999997643211 1468899999998789999 999999999998
Q ss_pred HHHHHHHHHhccCCCccccCCHHHHHHHHhcCcc-----cCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhh
Q 036633 409 WACEETKRRNNDSKAVIVCPSTSALVHIASNAAR-----KYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETE 483 (550)
Q Consensus 409 ~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~-----~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~ 483 (550)
..+..+...+...+. .+.++++++++|+.++|+ ..| |+|.+.+++++ .+....+......+..+.|+.+...
T Consensus 217 ~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~~~~~~~~~~~~g-~~R~l~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~v~ 293 (310)
T 1ofh_A 217 SLTEQYKALMATEGV-NIAFTTDAVKKIAEAAFRVNEKTENI-GARRLHTVMER-LMDKISFSASDMNGQTVNIDAAYVA 293 (310)
T ss_dssp CHHHHHHHHHHHTTC-EEEECHHHHHHHHHHHHHHHHHSCCC-TTHHHHHHHHH-HSHHHHHHGGGCTTCEEEECHHHHH
T ss_pred HHHHHHHHHHHhcCC-eeccCHHHHHHHHHHhhhhccccccc-CcHHHHHHHHH-HHHhhhcCCccccCCEEEEeeHHHH
Confidence 455555555555677 789999999999998873 146 77999999997 4444444443334444556666555
Q ss_pred ccc
Q 036633 484 DME 486 (550)
Q Consensus 484 ~~~ 486 (550)
...
T Consensus 294 ~~l 296 (310)
T 1ofh_A 294 DAL 296 (310)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 10
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.91 E-value=1.2e-23 Score=209.80 Aligned_cols=213 Identities=15% Similarity=0.174 Sum_probs=162.2
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
+.++|++.++..+...+... . ..+.+++|+||||||||++|+++++.+.. ...+++.+||+.+.....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~---~------~~~~~vll~G~~GtGKt~la~~i~~~~~~---~~~~~~~v~~~~~~~~~~ 73 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHL---A------PLDKPVLIIGERGTGKELIASRLHYLSSR---WQGPFISLNCAALNENLL 73 (265)
T ss_dssp ----CCCHHHHHHHHHHHHH---T------TSCSCEEEECCTTSCHHHHHHHHHHTSTT---TTSCEEEEEGGGSCHHHH
T ss_pred ccceeCCHHHHHHHHHHHHH---h------CCCCCEEEECCCCCcHHHHHHHHHHhcCc---cCCCeEEEecCCCChhHH
Confidence 34789999999998888765 1 12368999999999999999999999876 667999999999987666
Q ss_pred hhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633 286 IKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 286 ~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~ 353 (550)
.+.++| .++++ +....+++||||||+.+++++|+.|+++++++ . +... +......++.||+|||.
T Consensus 74 ~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~--~-~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 74 DSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG--E-LERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp HHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHC--E-ECCCCC--CEECCCEEEEEESS
T ss_pred HHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhC--C-eecCCCcccccCCeEEEEecCc
Confidence 667776 23332 23345689999999999999999999999999 6 5544 33333456779999998
Q ss_pred ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc-eeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCcc--ccC
Q 036633 354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK-LVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVI--VCP 428 (550)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~-ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~--l~~ 428 (550)
+...... ...|+++|++|++. .|.++ ||+. +++..++..++....... +. . ..+
T Consensus 151 ~~~~~~~--------------~~~~~~~L~~Rl~~~~i~lp---~L~~R~~di~~l~~~~l~~~~~~~---~~-~~~~~~ 209 (265)
T 2bjv_A 151 DLPAMVN--------------EGTFRADLLDALAFDVVQLP---PLRERESDIMLMAEYFAIQMCREI---KL-PLFPGF 209 (265)
T ss_dssp CHHHHHH--------------HTSSCHHHHHHHCSEEEECC---CGGGCHHHHHHHHHHHHHHHHHHT---TC-SSCCCB
T ss_pred CHHHHHH--------------cCCccHHHHHhhcCcEEeCC---ChhhhhHHHHHHHHHHHHHHHHHh---CC-CcccCc
Confidence 7544432 35799999999953 35555 8876 899999999988766653 33 3 378
Q ss_pred CHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 429 STSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 429 ~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+++++++|..++|| | |+|.|++++++
T Consensus 210 ~~~a~~~L~~~~~~--g-n~reL~~~l~~ 235 (265)
T 2bjv_A 210 TERARETLLNYRWP--G-NIRELKNVVER 235 (265)
T ss_dssp CHHHHHHHHHSCCT--T-HHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCC--C-CHHHHHHHHHH
Confidence 99999999998885 7 99999999996
No 11
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.91 E-value=1.3e-23 Score=221.55 Aligned_cols=215 Identities=15% Similarity=0.152 Sum_probs=176.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++|++.++..+...+.+. . ....+++++|++|||||.+|++|+....+ ...+|+.+||+.+.+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~---a------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r---~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI---S------CAECPVLITGESGVGKEVVARLIHKLSDR---SKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH---T------TCCSCEEEECSTTSSHHHHHHHHHHHSTT---TTSCEEEEETTTSCHHHH
T ss_pred hhhhhccHHhhHHHHHHHHh---c------CCCCCeEEecCCCcCHHHHHHHHHHhcCC---CCCCeEEEecCCCCHHHH
Confidence 46899999999999888865 1 11257799999999999999999999887 788999999999999888
Q ss_pred hhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633 286 IKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 286 ~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~ 353 (550)
.+.||| .+|++ +....+++||||||+.+++++|..|++++++| . ++.. |......++.||+|||.
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~--~-~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESG--K-FYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHS--E-ECCBTCCSBEECCCEEEEEESS
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcC--c-EEeCCCCceeeccEEEEEeCCC
Confidence 899998 44443 33345689999999999999999999999999 6 5544 44444456669999999
Q ss_pred ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
+...... .+.|+++|++|++ ++.+. .|||.+ +|+..++..++.++..++... ...++++
T Consensus 282 ~l~~~~~--------------~g~fr~dl~~rl~-~~~i~-lPpLreR~~Di~~l~~~~l~~~~~~~~~~---~~~~~~~ 342 (387)
T 1ny5_A 282 NIKELVK--------------EGKFREDLYYRLG-VIEIE-IPPLRERKEDIIPLANHFLKKFSRKYAKE---VEGFTKS 342 (387)
T ss_dssp CHHHHHH--------------TTSSCHHHHHHHT-TEEEE-CCCGGGCHHHHHHHHHHHHHHHHHHTTCC---CCEECHH
T ss_pred CHHHHHH--------------cCCccHHHHHhhc-CCeec-CCcchhccccHHHHHHHHHHHHHHHcCCC---CCCCCHH
Confidence 8766554 5789999999995 44454 338865 999999999999888775443 2368999
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+++.|..+.|| | |+|+|+++|++
T Consensus 343 a~~~l~~~~wp--G-NvreL~~~i~~ 365 (387)
T 1ny5_A 343 AQELLLSYPWY--G-NVRELKNVIER 365 (387)
T ss_dssp HHHHHHHSCCT--T-HHHHHHHHHHH
T ss_pred HHHHHHhCCCC--c-HHHHHHHHHHH
Confidence 99999999887 8 99999999997
No 12
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.90 E-value=1.8e-23 Score=218.98 Aligned_cols=214 Identities=16% Similarity=0.191 Sum_probs=173.2
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++|++.++..+...+.+. . ....++++.|++||||+.+|++++....+ .. +|+.+||+.+++...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~---a------~~~~~vli~GesGtGKe~lAr~ih~~s~r---~~-~fv~vnc~~~~~~~~ 195 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI---A------KSKAPVLITGESGTGKEIVARLIHRYSGR---KG-AFVDLNCASIPQELA 195 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH---H------TSCSCEEEECCTTSSHHHHHHHHHHHHCC---CS-CEEEEESSSSCTTTH
T ss_pred ccccccchHHHHHHhhhhhh---h------ccchhheEEeCCCchHHHHHHHHHHhccc---cC-CcEEEEcccCChHHH
Confidence 46899999999988888765 1 12257899999999999999999998876 43 499999999999999
Q ss_pred hhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633 286 IKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL 353 (550)
Q Consensus 286 ~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~ 353 (550)
.+.||| .+|++ +....+++||||||+.+++++|..|++++++| . ++.. +......++.+|+|||.
T Consensus 196 ~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~--~-~~~~g~~~~~~~~~rii~at~~ 272 (368)
T 3dzd_A 196 ESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETG--S-FTRLGGNQKIEVDIRVISATNK 272 (368)
T ss_dssp HHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHS--E-ECCBTCCCBEECCCEEEEEESS
T ss_pred HHHhcCccccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhC--C-cccCCCCcceeeeeEEEEecCC
Confidence 999998 44443 33445689999999999999999999999999 6 5543 33333345569999998
Q ss_pred ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
+...... .+.|+++|++|+. ++.+. .|||.+ +|+..++.+++.++..++... ...++++
T Consensus 273 ~l~~~v~--------------~g~fr~dL~~rl~-~~~i~-lPpLreR~~Di~~l~~~~l~~~~~~~~~~---~~~~~~~ 333 (368)
T 3dzd_A 273 NLEEEIK--------------KGNFREDLYYRLS-VFQIY-LPPLRERGKDVILLAEYFLKKFAKEYKKN---CFELSEE 333 (368)
T ss_dssp CHHHHHH--------------TTSSCHHHHHHHT-SEEEE-CCCGGGSTTHHHHHHHHHHHHHHHHTTCC---CCCBCHH
T ss_pred CHHHHHH--------------cCCccHHHHHHhC-CeEEe-CCChhhchhhHHHHHHHHHHHHHHHcCCC---CCCcCHH
Confidence 7665544 5789999999995 54444 239987 999999999999988876544 3579999
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++++|..+.|| | |+|+|+++|++
T Consensus 334 a~~~L~~~~wp--G-NvreL~n~i~~ 356 (368)
T 3dzd_A 334 TKEYLMKQEWK--G-NVRELKNLIER 356 (368)
T ss_dssp HHHHHHTCCCT--T-HHHHHHHHHHH
T ss_pred HHHHHHhCCCC--c-HHHHHHHHHHH
Confidence 99999999887 8 99999999997
No 13
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.88 E-value=6.6e-22 Score=210.07 Aligned_cols=227 Identities=20% Similarity=0.226 Sum_probs=165.2
Q ss_pred HHHhhhhcCcccCcHHHHHHHHHHHhcchhhhc----CCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633 198 MRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKK----GLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI 273 (550)
Q Consensus 198 ~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~----gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li 273 (550)
..+...|.+.|+||++|++.+..++.... .+. ++.....|.++||+||||||||++|++||+.+.. +|+
T Consensus 7 ~~i~~~Ld~~IvGqe~ak~~l~~av~~~~-~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~------~~~ 79 (444)
T 1g41_A 7 REIVSELDQHIIGQADAKRAVAIALRNRW-RRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA------PFI 79 (444)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHH-HHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC------CEE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC------Cce
Confidence 35677889999999999999998885420 011 2211223478999999999999999999999977 999
Q ss_pred EEecCCCCchhh--------hhhHHh------------------------------------------------------
Q 036633 274 HFDMGNYTELES--------IKHFFD------------------------------------------------------ 291 (550)
Q Consensus 274 ~id~s~~~~~~~--------~s~liG------------------------------------------------------ 291 (550)
.+|++.+.+... +..++.
T Consensus 80 ~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~l 159 (444)
T 1g41_A 80 KVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAF 159 (444)
T ss_dssp EEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC---------------------------------------
T ss_pred eecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHH
Confidence 999987655211 111100
Q ss_pred --------------------------------------------------------------------------------
Q 036633 292 -------------------------------------------------------------------------------- 291 (550)
Q Consensus 292 -------------------------------------------------------------------------------- 291 (550)
T Consensus 160 d~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~ 239 (444)
T 1g41_A 160 RKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEE 239 (444)
T ss_dssp ------------------------------------------------------------------CCGGGSCSSCCHHH
T ss_pred HHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHH
Confidence
Q ss_pred HHHHHHHhC-CCCeEEeccccccCH------------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHH
Q 036633 292 SLAALVKKR-PYSVVLFDKIEKANS------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQV 358 (550)
Q Consensus 292 ~lt~al~~~-p~~VlllDEIeka~~------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~ 358 (550)
...+++.+. +.+++++|||+|+.. .||+.||+++|.. . ....-..+|.+|++||+|.......
T Consensus 240 ~~~~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~--~-~~~~~~~~d~~~ilfI~~gaf~~~~- 315 (444)
T 1g41_A 240 LKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGS--T-VSTKHGMVKTDHILFIASGAFQVAR- 315 (444)
T ss_dssp HHHHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCC--E-EEETTEEEECTTCEEEEEECCSSCC-
T ss_pred HHHHHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccc--c-cccccceecCCcEEEEeccccccCC-
Confidence 001122232 567999999999863 3899999999987 3 2223357899999999997432110
Q ss_pred HHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH---H-HHHHHHHHhccCCCccccCCHHHHH
Q 036633 359 YEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE---W-ACEETKRRNNDSKAVIVCPSTSALV 434 (550)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~---~-~l~~~~~~l~~~~~~~l~~~~~a~~ 434 (550)
...+.|+|++|++.+|.|. +|+.+++..|+. . .+.++...+...|+ .+.|+++++.
T Consensus 316 ----------------~~dlipel~~R~~i~i~l~---~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~-~l~~~~~al~ 375 (444)
T 1g41_A 316 ----------------PSDLIPELQGRLPIRVELT---ALSAADFERILTEPHASLTEQYKALMATEGV-NIAFTTDAVK 375 (444)
T ss_dssp ----------------GGGSCHHHHTTCCEEEECC---CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTC-EEEECHHHHH
T ss_pred ----------------hhhcchHHhcccceeeeCC---CCCHHHHHHHHHHHHHhHHHHHHHHhcccCc-eEEECHHHHH
Confidence 0125699999998889999 999999999993 3 44555566666788 9999999999
Q ss_pred HHHhcC-----c-ccCCCcccHHHHHHcc
Q 036633 435 HIASNA-----A-RKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 435 ~L~~~~-----~-~~~GaN~R~L~~~i~~ 457 (550)
+|++.+ | .+.|| |.|++.|++
T Consensus 376 ~i~~~a~~~~~~t~~~Ga--R~L~~~ie~ 402 (444)
T 1g41_A 376 KIAEAAFRVNEKTENIGA--RRLHTVMER 402 (444)
T ss_dssp HHHHHHHHHHHHSCCCGG--GHHHHHHHH
T ss_pred HHHHHHHHhccCCccCCc--hHHHHHHHH
Confidence 999853 3 56788 999999997
No 14
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=6.8e-22 Score=201.06 Aligned_cols=218 Identities=14% Similarity=0.169 Sum_probs=161.0
Q ss_pred HHHHHhhhhcCcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCCC
Q 036633 196 RYMRVQGRLKKRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DNDN 270 (550)
Q Consensus 196 ~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~ 270 (550)
.+..+...|.+.++||+.+++.+...+..... .+.|+..+..+.++||+||||||||++|+++|+.+...+ ....
T Consensus 21 ~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~ 100 (309)
T 3syl_A 21 GAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKG 100 (309)
T ss_dssp THHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSC
T ss_pred cHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCC
Confidence 35667777888899999999999877654310 134555443338999999999999999999999986521 1244
Q ss_pred ceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEecccccc---------CHHHHHHHHHhhhhccccccccCCeEee
Q 036633 271 HLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKA---------NSSILNLLLKILKTDFNRKATRGIAAFD 341 (550)
Q Consensus 271 ~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka---------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd 341 (550)
+++.++++.+..... ....+.+.+.+....++||||||++.+ ++.+++.|+++++++ .
T Consensus 101 ~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~--~---------- 167 (309)
T 3syl_A 101 HLVSVTRDDLVGQYI-GHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN--R---------- 167 (309)
T ss_dssp CEEEECGGGTCCSST-TCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC--T----------
T ss_pred cEEEEcHHHhhhhcc-cccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC--C----------
Confidence 899999887743211 001113344444445689999999966 899999999999988 5
Q ss_pred cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS 421 (550)
Q Consensus 342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~ 421 (550)
.+++||+|+|...... ....+|+|.+|++.+|.|. |++.+++..|+..++.. .
T Consensus 168 -~~~~~i~~~~~~~~~~----------------~~~~~~~l~~R~~~~i~~~---~~~~~~~~~il~~~l~~-------~ 220 (309)
T 3syl_A 168 -DDLVVILAGYADRMEN----------------FFQSNPGFRSRIAHHIEFP---DYSDEELFEIAGHMLDD-------Q 220 (309)
T ss_dssp -TTCEEEEEECHHHHHH----------------HHHHSTTHHHHEEEEEEEC---CCCHHHHHHHHHHHHHH-------T
T ss_pred -CCEEEEEeCChHHHHH----------------HHhhCHHHHHhCCeEEEcC---CcCHHHHHHHHHHHHHH-------c
Confidence 5678999988532110 0013589999999999999 99999999999998865 4
Q ss_pred CCccccCCHHHHHHHHhcC----c-ccCCCcccHHHHHHcc
Q 036633 422 KAVIVCPSTSALVHIASNA----A-RKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 422 ~~~~l~~~~~a~~~L~~~~----~-~~~GaN~R~L~~~i~~ 457 (550)
+ +.++++++++++.+. . +.+| |+|.+++++++
T Consensus 221 ~---~~~~~~~~~~l~~~~~~~~~~~~~g-n~r~l~~~l~~ 257 (309)
T 3syl_A 221 N---YQMTPEAETALRAYIGLRRNQPHFA-NARSIRNALDR 257 (309)
T ss_dssp T---CEECHHHHHHHHHHHHHHTTSSSCC-HHHHHHHHHHH
T ss_pred C---CCCCHHHHHHHHHHHHHhccCCCCC-cHHHHHHHHHH
Confidence 3 478999999998751 1 3457 89999999997
No 15
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.83 E-value=2e-20 Score=200.41 Aligned_cols=230 Identities=14% Similarity=0.130 Sum_probs=159.0
Q ss_pred CcccCcHHHH---HHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633 206 KRVFGQNDAI---DVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE 282 (550)
Q Consensus 206 ~~viGQ~~ai---~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~ 282 (550)
..++||++++ ..+...+... ++.+++|+||||||||++|++||+.+.. +|+.+++.....
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~-----------~~~~vLL~GppGtGKTtlAr~ia~~~~~------~f~~l~a~~~~~ 88 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG-----------HLHSMILWGPPGTGKTTLAEVIARYANA------DVERISAVTSGV 88 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT-----------CCCEEEEECSTTSSHHHHHHHHHHHTTC------EEEEEETTTCCH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC-----------CCcEEEEECCCCCcHHHHHHHHHHHhCC------CeEEEEeccCCH
Confidence 5699999999 7777777755 3368999999999999999999999876 899999765431
Q ss_pred hhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633 283 LESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM 362 (550)
Q Consensus 283 ~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~ 362 (550)
..+...+...........++|||||||+.++++.|+.|++.+++| . +++|++|+...
T Consensus 89 -~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~-------------v~lI~att~n~------- 145 (447)
T 3pvs_A 89 -KEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--T-------------ITFIGATTENP------- 145 (447)
T ss_dssp -HHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--S-------------CEEEEEESSCG-------
T ss_pred -HHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--c-------------eEEEecCCCCc-------
Confidence 122222222222222345689999999999999999999999998 4 23555554321
Q ss_pred hhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcc
Q 036633 363 LTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAAR 442 (550)
Q Consensus 363 ~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~ 442 (550)
...|++++++|+ .++.|. |++.+++..++...+......+.. . .+.++++++++|+.. ++
T Consensus 146 ------------~~~l~~aL~sR~-~v~~l~---~l~~edi~~il~~~l~~~~~~~~~--~-~~~i~~~al~~L~~~-~~ 205 (447)
T 3pvs_A 146 ------------SFELNSALLSRA-RVYLLK---SLSTEDIEQVLTQAMEDKTRGYGG--Q-DIVLPDETRRAIAEL-VN 205 (447)
T ss_dssp ------------GGSSCHHHHTTE-EEEECC---CCCHHHHHHHHHHHHHCTTTSSTT--S-SEECCHHHHHHHHHH-HC
T ss_pred ------------ccccCHHHhCce-eEEeeC---CcCHHHHHHHHHHHHHHHhhhhcc--c-cCcCCHHHHHHHHHH-CC
Confidence 136789999999 588999 999999999999988653322211 2 568999999999986 32
Q ss_pred cCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCccccc
Q 036633 443 KYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWW 503 (550)
Q Consensus 443 ~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~ 503 (550)
| |+|.+.+.++. ... .......+...|+.+............+|+.|+.+|+.
T Consensus 206 --G-d~R~lln~Le~-a~~----~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~ 258 (447)
T 3pvs_A 206 --G-DARRALNTLEM-MAD----MAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDL 258 (447)
T ss_dssp --S-CHHHHHHHHHH-HHH----HSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHH
T ss_pred --C-CHHHHHHHHHH-HHH----hcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHH
Confidence 6 88999999986 111 11111123456788888888777778889988888754
No 16
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.81 E-value=3.3e-19 Score=183.72 Aligned_cols=193 Identities=18% Similarity=0.207 Sum_probs=151.4
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
..++|++.++..+...+... .. +..+ .++||+||||||||++|+++|+.+.. +|+.++|+.+...
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~---~~----~~~~~~~vll~G~~GtGKT~la~~ia~~~~~------~~~~~~~~~~~~~- 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAA---KK----RNECLDHILFSGPAGLGKTTLANIISYEMSA------NIKTTAAPMIEKS- 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHH---HH----TTSCCCCEEEECSTTSSHHHHHHHHHHHTTC------CEEEEEGGGCCSH-
T ss_pred HHhCChHHHHHHHHHHHHHH---Hh----cCCCCCeEEEECcCCCCHHHHHHHHHHHhCC------CeEEecchhccch-
Confidence 46899999999999888865 21 1233 78999999999999999999999877 8999999877532
Q ss_pred hhhhHHhHHHHHHHh-CCCCeEEeccccccCHHHHHHHHHhhhhccccccccC------CeEeecCCeEEEEeCCCChHH
Q 036633 285 SIKHFFDSLAALVKK-RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG------IAAFDLTNTLIIMTSDLKDEQ 357 (550)
Q Consensus 285 ~~s~liG~lt~al~~-~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~------g~~vd~~~~iiI~TsN~g~~~ 357 (550)
|.+...+.. ..++|||||||+.+++++++.|+++++++.+. +..+ ...++..++++|++||..
T Consensus 95 ------~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~atn~~--- 164 (338)
T 3pfi_A 95 ------GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLD-IIIGSGPAAQTIKIDLPKFTLIGATTRA--- 164 (338)
T ss_dssp ------HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC----------CCCCCCCCCCCEEEEEESCG---
T ss_pred ------hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccch-hhcccCccccceecCCCCeEEEEeCCCc---
Confidence 233444443 45689999999999999999999999998322 2111 123455578899999962
Q ss_pred HHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHH
Q 036633 358 VYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIA 437 (550)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~ 437 (550)
..|+|+|++|++.++.|. +++.+++..++...+.. .++ .+++++++.|+
T Consensus 165 ------------------~~l~~~L~~R~~~~i~l~---~~~~~e~~~il~~~~~~-------~~~---~~~~~~~~~l~ 213 (338)
T 3pfi_A 165 ------------------GMLSNPLRDRFGMQFRLE---FYKDSELALILQKAALK-------LNK---TCEEKAALEIA 213 (338)
T ss_dssp ------------------GGSCHHHHTTCSEEEECC---CCCHHHHHHHHHHHHHH-------TTC---EECHHHHHHHH
T ss_pred ------------------cccCHHHHhhcCEEeeCC---CcCHHHHHHHHHHHHHh-------cCC---CCCHHHHHHHH
Confidence 468999999999899999 99999999998877643 334 78999999999
Q ss_pred hcCcccCCCcccHHHHHHcc
Q 036633 438 SNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 438 ~~~~~~~GaN~R~L~~~i~~ 457 (550)
. .|+ | |.|.+.+.+++
T Consensus 214 ~-~~~--G-~~r~l~~~l~~ 229 (338)
T 3pfi_A 214 K-RSR--S-TPRIALRLLKR 229 (338)
T ss_dssp H-TTT--T-CHHHHHHHHHH
T ss_pred H-HHC--c-CHHHHHHHHHH
Confidence 8 443 6 88999999986
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.79 E-value=1.9e-18 Score=176.53 Aligned_cols=196 Identities=17% Similarity=0.129 Sum_probs=148.9
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++|++.++..+...+... ..+ ...+.+++|+||||||||++|+++|+.+.. +++.++|+.+...
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~---~~~---~~~~~~vll~G~~GtGKT~la~~i~~~~~~------~~~~~~~~~~~~~-- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAA---KAR---KEPLEHLLLFGPPGLGKTTLAHVIAHELGV------NLRVTSGPAIEKP-- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHH---HHH---CSCCCCCEEECCTTCCCHHHHHHHHHHHTC------CEEEECTTTCCSH--
T ss_pred HHhhCHHHHHHHHHHHHHHH---Hcc---CCCCCcEEEECCCCCCHHHHHHHHHHHhCC------CEEEEeccccCCh--
Confidence 56899999999998888764 211 112378999999999999999999999876 8999999887542
Q ss_pred hhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC------CeEeecCCeEEEEeCCCChHHHH
Q 036633 286 IKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG------IAAFDLTNTLIIMTSDLKDEQVY 359 (550)
Q Consensus 286 ~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~------g~~vd~~~~iiI~TsN~g~~~~~ 359 (550)
+.+.+.+..+ ....++||||||+.+++..++.|+++++++.+. +..+ .......++++|+|||..
T Consensus 78 -~~l~~~l~~~--~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~-~v~~~~~~~~~~~~~~~~~~~i~~t~~~----- 148 (324)
T 1hqc_A 78 -GDLAAILANS--LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMD-IVIGQGPAARTIRLELPRFTLIGATTRP----- 148 (324)
T ss_dssp -HHHHHHHTTT--CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEE-ECCSSSSSCCCEEEECCCCEEEEEESCC-----
T ss_pred -HHHHHHHHHh--ccCCCEEEEECCcccccchHHHHHHHHHhhhhH-HhccccccccccccCCCCEEEEEeCCCc-----
Confidence 2333333221 145589999999999999999999999988322 1111 122344578899999864
Q ss_pred HhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633 360 EVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN 439 (550)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~ 439 (550)
..|+++|++|++.++.|. +++.+++..++...+.. .+. .+++++++.|+.+
T Consensus 149 ----------------~~~~~~l~~R~~~~i~l~---~~~~~e~~~~l~~~~~~-------~~~---~~~~~~~~~l~~~ 199 (324)
T 1hqc_A 149 ----------------GLITAPLLSRFGIVEHLE---YYTPEELAQGVMRDARL-------LGV---RITEEAALEIGRR 199 (324)
T ss_dssp ----------------SSCSCSTTTTCSCEEECC---CCCHHHHHHHHHHHHHT-------TTC---CCCHHHHHHHHHH
T ss_pred ----------------ccCCHHHHhcccEEEecC---CCCHHHHHHHHHHHHHh-------cCC---CCCHHHHHHHHHH
Confidence 478899999998799999 99999998887776632 344 7899999999986
Q ss_pred CcccCCCcccHHHHHHcc
Q 036633 440 AARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 440 ~~~~~GaN~R~L~~~i~~ 457 (550)
+ + | |.|.+.+.++.
T Consensus 200 ~-~--G-~~r~l~~~l~~ 213 (324)
T 1hqc_A 200 S-R--G-TMRVAKRLFRR 213 (324)
T ss_dssp S-C--S-CHHHHHHHHHH
T ss_pred c-c--C-CHHHHHHHHHH
Confidence 4 2 7 88999888876
No 18
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.78 E-value=3.4e-18 Score=175.21 Aligned_cols=187 Identities=10% Similarity=0.119 Sum_probs=148.9
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++||++++..+..++... ..|..+||.||||||||++|+++++.+.. +++.+|++...
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~----------~~~~~~L~~G~~G~GKT~la~~la~~l~~------~~~~i~~~~~~---- 85 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG----------KIPHIILHSPSPGTGKTTVAKALCHDVNA------DMMFVNGSDCK---- 85 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT----------CCCSEEEECSSTTSSHHHHHHHHHHHTTE------EEEEEETTTCC----
T ss_pred HHHhCcHHHHHHHHHHHHcC----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCC------CEEEEcccccC----
Confidence 56899999999988888755 13368899999999999999999999977 89999998865
Q ss_pred hhhHHhHHHHHHHhC----CCCeEEeccccccC-HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 286 IKHFFDSLAALVKKR----PYSVVLFDKIEKAN-SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 286 ~s~liG~lt~al~~~----p~~VlllDEIeka~-~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
...+...+.+..... .+.||+|||++.++ ++.++.|++++++. . .++.||+|||..
T Consensus 86 ~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~--~-----------~~~~iI~~~n~~------ 146 (324)
T 3u61_B 86 IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY--S-----------SNCSIIITANNI------ 146 (324)
T ss_dssp HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH--G-----------GGCEEEEEESSG------
T ss_pred HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC--C-----------CCcEEEEEeCCc------
Confidence 222222333333332 45799999999999 99999999999986 4 456789999963
Q ss_pred hhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCH-HHHHHHHhc
Q 036633 361 VMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPST-SALVHIASN 439 (550)
Q Consensus 361 ~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~-~a~~~L~~~ 439 (550)
..+.+++.+|| .++.|. +++.+++..|+...+..+...+...++ .+++ +++++|+..
T Consensus 147 ---------------~~l~~~l~sR~-~~i~~~---~~~~~e~~~il~~~~~~l~~~~~~~~~---~~~~~~~~~~l~~~ 204 (324)
T 3u61_B 147 ---------------DGIIKPLQSRC-RVITFG---QPTDEDKIEMMKQMIRRLTEICKHEGI---AIADMKVVAALVKK 204 (324)
T ss_dssp ---------------GGSCTTHHHHS-EEEECC---CCCHHHHHHHHHHHHHHHHHHHHHHTC---CBSCHHHHHHHHHH
T ss_pred ---------------cccCHHHHhhC-cEEEeC---CCCHHHHHHHHHHHHHHHHHHHHHcCC---CCCcHHHHHHHHHh
Confidence 35789999999 689999 999999999988888777776666665 7787 999999986
Q ss_pred CcccCCCcccHHHHHHcc
Q 036633 440 AARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 440 ~~~~~GaN~R~L~~~i~~ 457 (550)
+. | |.|.+.+.++.
T Consensus 205 ~~---g-d~R~a~~~L~~ 218 (324)
T 3u61_B 205 NF---P-DFRKTIGELDS 218 (324)
T ss_dssp TC---S-CTTHHHHHHHH
T ss_pred CC---C-CHHHHHHHHHH
Confidence 42 5 78987777774
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.77 E-value=8.5e-18 Score=172.60 Aligned_cols=199 Identities=17% Similarity=0.221 Sum_probs=144.3
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
..|+|++.+++.+..++........-+.....| ..+||+||||||||++|+++|+.+.. +|+.++++++....
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~------~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS------TFFSVSSSDLVSKW 91 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC------EEEEEEHHHHHTTT
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC------CEEEEchHHHhhcc
Confidence 468999999999998885331101111122345 78999999999999999999999877 99999997753221
Q ss_pred --hhhhHHhHHHHHHHhCCCCeEEeccccccCH-----------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeC
Q 036633 285 --SIKHFFDSLAALVKKRPYSVVLFDKIEKANS-----------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTS 351 (550)
Q Consensus 285 --~~s~liG~lt~al~~~p~~VlllDEIeka~~-----------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~Ts 351 (550)
.....+..+....+....+|||||||+.+.+ .+++.|+..++.- . . ...+++||+||
T Consensus 92 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~--~--~------~~~~v~vi~at 161 (322)
T 3eie_A 92 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV--G--N------DSQGVLVLGAT 161 (322)
T ss_dssp GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGG--G--T------SCCCEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccc--c--c------cCCceEEEEec
Confidence 1112222333334445558999999998754 5678888888643 1 1 11467899999
Q ss_pred CCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 352 DLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 352 N~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
|.. ..++|++++||+..+.|. +++.++...|+...+. .. ...+++.
T Consensus 162 n~~---------------------~~ld~al~~Rf~~~i~~~---~p~~~~r~~il~~~~~-------~~---~~~~~~~ 207 (322)
T 3eie_A 162 NIP---------------------WQLDSAIRRRFERRIYIP---LPDLAARTTMFEINVG-------DT---PCVLTKE 207 (322)
T ss_dssp SCG---------------------GGSCHHHHHHCCEEEECC---CCCHHHHHHHHHHHHT-------TC---CCCCCHH
T ss_pred CCh---------------------hhCCHHHHcccCeEEEeC---CCCHHHHHHHHHHHhc-------cC---CCCCCHH
Confidence 964 357899999999999999 8899999999988773 23 4467899
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++.|+.... |.++++|+.+++.
T Consensus 208 ~l~~la~~t~---g~sg~di~~l~~~ 230 (322)
T 3eie_A 208 DYRTLGAMTE---GYSGSDIAVVVKD 230 (322)
T ss_dssp HHHHHHHTTT---TCCHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCCHHHHHHHHHH
Confidence 9999998654 4466999999987
No 20
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.76 E-value=2.5e-18 Score=155.91 Aligned_cols=144 Identities=10% Similarity=0.069 Sum_probs=109.7
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
+.++|++.++..+...+... . ..+.+++|+||||||||++|++|+..... ...+|+ +||+.+.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~---a------~~~~~vll~G~~GtGKt~lA~~i~~~~~~---~~~~~v-~~~~~~~~~-- 65 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQL---S------ETDIAVWLYGAPGTGRMTGARYLHQFGRN---AQGEFV-YRELTPDNA-- 65 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHH---T------TCCSCEEEESSTTSSHHHHHHHHHHSSTT---TTSCCE-EEECCTTTS--
T ss_pred CCceeCCHHHHHHHHHHHHH---h------CCCCCEEEECCCCCCHHHHHHHHHHhCCc---cCCCEE-EECCCCCcc--
Confidence 35899999999999998865 1 12368999999999999999999998876 677999 999988765
Q ss_pred hhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhh
Q 036633 286 IKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTA 365 (550)
Q Consensus 286 ~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~ 365 (550)
....|.+..+ ..++||||||+.+++++|..|++++... . .++.+|+|||.+......
T Consensus 66 -~~~~~~~~~a----~~g~l~ldei~~l~~~~q~~Ll~~l~~~--~-----------~~~~~I~~t~~~~~~~~~----- 122 (145)
T 3n70_A 66 -PQLNDFIALA----QGGTLVLSHPEHLTREQQYHLVQLQSQE--H-----------RPFRLIGIGDTSLVELAA----- 122 (145)
T ss_dssp -SCHHHHHHHH----TTSCEEEECGGGSCHHHHHHHHHHHHSS--S-----------CSSCEEEEESSCHHHHHH-----
T ss_pred -hhhhcHHHHc----CCcEEEEcChHHCCHHHHHHHHHHHhhc--C-----------CCEEEEEECCcCHHHHHH-----
Confidence 2233433332 4589999999999999999999999655 3 345589999987655433
Q ss_pred hHhhHHHHhccCCChhhhhhccce-eEecCCCCCC
Q 036633 366 TYGRVNEVTGSLFKPSLLKLLDKL-VVIDLAVPLL 399 (550)
Q Consensus 366 ~~~~~~~~l~~~f~p~ll~Rid~i-i~f~~~~pL~ 399 (550)
...|+++|++|+..+ |.++ ||.
T Consensus 123 ---------~~~~~~~L~~rl~~~~i~lP---pLR 145 (145)
T 3n70_A 123 ---------SNHIIAELYYCFAMTQIACL---PLT 145 (145)
T ss_dssp ---------HSCCCHHHHHHHHHHEEECC---CCC
T ss_pred ---------cCCCCHHHHHHhcCCEEeCC---CCC
Confidence 368999999999533 4444 763
No 21
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8.4e-18 Score=175.89 Aligned_cols=194 Identities=20% Similarity=0.245 Sum_probs=136.4
Q ss_pred cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
-+.|.|.+++++.+.+++...+. .+.|+.. |..+||+||||||||++|+++|..+.. +|+.+++++
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~---prGvLL~GPPGTGKTllAkAiA~e~~~------~f~~v~~s~ 217 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ---PKGVILYGPPGTGKTLLARAVAHHTDC------KFIRVSGAE 217 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC---CCCEEEESCSSSSHHHHHHHHHHHHTC------EEEEEEGGG
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---CCceEEeCCCCCCHHHHHHHHHHhhCC------CceEEEhHH
Confidence 35689999999999988876321 1334422 368999999999999999999999988 999999998
Q ss_pred CCchhh--hhhHHh-HHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEeec
Q 036633 280 YTELES--IKHFFD-SLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 280 ~~~~~~--~s~liG-~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
+..... ..+.+- .|..+-...| +||||||||.+.+ .+.+.||..+|.- . ..
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~aP-~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--~---------~~ 285 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREHAP-SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF--E---------TS 285 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHTCS-EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT--T---------CC
T ss_pred hhccccchHHHHHHHHHHHHHHhCC-ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc--C---------CC
Confidence 754321 112222 3333434455 8999999997632 2456666666532 1 11
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND 420 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~ 420 (550)
.+++||+|||.. ..++|+|+. |||..|.|. +.+.++...|++.++.+
T Consensus 286 ~~V~vIaATNrp---------------------d~LDpAllRpGRfD~~I~i~---lPd~~~R~~Il~~~~~~------- 334 (405)
T 4b4t_J 286 KNIKIIMATNRL---------------------DILDPALLRPGRIDRKIEFP---PPSVAARAEILRIHSRK------- 334 (405)
T ss_dssp CCEEEEEEESCS---------------------SSSCHHHHSTTSSCCEEECC---CCCHHHHHHHHHHHHTT-------
T ss_pred CCeEEEeccCCh---------------------hhCCHhHcCCCcCceEEEcC---CcCHHHHHHHHHHHhcC-------
Confidence 567899999985 578999985 999999999 88999999999877632
Q ss_pred CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
..+ .-.++ ++.|+..+- |.+|.+|+.++..
T Consensus 335 ~~l-~~dvd---l~~lA~~t~---G~SGADi~~l~~e 364 (405)
T 4b4t_J 335 MNL-TRGIN---LRKVAEKMN---GCSGADVKGVCTE 364 (405)
T ss_dssp SBC-CSSCC---HHHHHHHCC---SCCHHHHHHHHHH
T ss_pred CCC-CccCC---HHHHHHHCC---CCCHHHHHHHHHH
Confidence 211 11122 566776432 4466899998886
No 22
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.75 E-value=6e-17 Score=166.43 Aligned_cols=200 Identities=16% Similarity=0.215 Sum_probs=142.4
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
+.|+|++++++.+.+.+...+.....+.....| ..+||+||||||||++|+++|+.+.+ .+|+.++++++....
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~~~i~~~~l~~~~ 86 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-----STFFSISSSDLVSKW 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-----CEEEEEECCSSCCSS
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-----CcEEEEEhHHHHhhh
Confidence 569999999999988885431100111111244 78999999999999999999999822 289999998875431
Q ss_pred h--hhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeC
Q 036633 285 S--IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTS 351 (550)
Q Consensus 285 ~--~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~Ts 351 (550)
. ....+..+.+..+....+|||||||+.+. ..+++.|+..++.- . . .-.+++||+||
T Consensus 87 ~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~--~-~-------~~~~v~vI~at 156 (322)
T 1xwi_A 87 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV--G-V-------DNDGILVLGAT 156 (322)
T ss_dssp CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCS--S-S-------CCTTEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcc--c-c-------cCCCEEEEEec
Confidence 1 11222233333444455899999999872 24677777777643 1 0 12567899999
Q ss_pred CCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 352 DLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 352 N~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
|.. ..++|++++||+..+.+. +++.++...|+...+. +. ...+++.
T Consensus 157 n~~---------------------~~ld~al~rRf~~~i~i~---~P~~~~r~~il~~~l~---------~~-~~~l~~~ 202 (322)
T 1xwi_A 157 NIP---------------------WVLDSAIRRRFEKRIYIP---LPEPHARAAMFKLHLG---------TT-QNSLTEA 202 (322)
T ss_dssp SCT---------------------TTSCHHHHHTCCEEEECC---CCCHHHHHHHHHHHHT---------TC-CBCCCHH
T ss_pred CCc---------------------ccCCHHHHhhcCeEEEeC---CcCHHHHHHHHHHHHh---------cC-CCCCCHH
Confidence 974 367899999999899998 8899999999888773 22 4467899
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++.|+.... |.++++|..+++.
T Consensus 203 ~l~~la~~t~---G~sgadl~~l~~~ 225 (322)
T 1xwi_A 203 DFRELGRKTD---GYSGADISIIVRD 225 (322)
T ss_dssp HHHHHHHTCT---TCCHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCCHHHHHHHHHH
Confidence 9999998653 4466999999987
No 23
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.74 E-value=9.3e-18 Score=170.17 Aligned_cols=169 Identities=14% Similarity=0.119 Sum_probs=112.2
Q ss_pred cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-
Q 036633 207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES- 285 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~- 285 (550)
.++.-+..++.++..+.+. +......+.|..+||+||||||||++|++||+.+.. ++++++|+++.....
T Consensus 8 ~~y~~~~~~~~~~~~~~k~---~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~------~~i~v~~~~l~~~~~g 78 (293)
T 3t15_A 8 GFYIAPAFMDKLVVHITKN---FLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGI------NPIMMSAGELESGNAG 78 (293)
T ss_dssp TEECCHHHHHHHHHHHHHT---TSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTC------CCEEEEHHHHHCC---
T ss_pred cccCCHHHHHHHHHHHHHH---HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCC------CEEEEeHHHhhhccCc
Confidence 3444566667777777766 555555556678899999999999999999999977 999999987643211
Q ss_pred --hhhHHhHHHHH---HHhCCCCeEEeccccccCH-------------HHHHHHHHhhhhccccccccC-CeEeecCCeE
Q 036633 286 --IKHFFDSLAAL---VKKRPYSVVLFDKIEKANS-------------SILNLLLKILKTDFNRKATRG-IAAFDLTNTL 346 (550)
Q Consensus 286 --~s~liG~lt~a---l~~~p~~VlllDEIeka~~-------------~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~i 346 (550)
...+...+..+ .+..+.+||||||||++.+ .+++.|++++|...+. -.++ ....+.++++
T Consensus 79 ~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~-~~~~~~~~~~~~~v~ 157 (293)
T 3t15_A 79 EPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV-QLPGMYNKQENARVP 157 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC------------CCCCCC
T ss_pred hhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhcccccc-ccccccccccCCCcE
Confidence 11111122222 2455669999999998876 4679999999976222 1122 3556678899
Q ss_pred EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633 347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l 411 (550)
||+|||.. ..++|+|+ +|++.+| +. | +.++...|+...+
T Consensus 158 vI~ttN~~---------------------~~ld~al~R~~R~d~~i-~~---P-~~~~r~~Il~~~~ 198 (293)
T 3t15_A 158 IIVTGNDF---------------------STLYAPLIRDGRMEKFY-WA---P-TREDRIGVCTGIF 198 (293)
T ss_dssp EEEECSSC---------------------CC--CHHHHHHHEEEEE-EC---C-CHHHHHHHHHHHH
T ss_pred EEEecCCc---------------------ccCCHHHhCCCCCceeE-eC---c-CHHHHHHHHHHhc
Confidence 99999974 45678888 6997666 45 5 9999999988666
No 24
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.74 E-value=3.8e-17 Score=155.99 Aligned_cols=185 Identities=15% Similarity=0.260 Sum_probs=139.6
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++|++.+++.+...+... ++.+++|+||||||||++|+.+++.+...+ ....++.++++.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-----------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 84 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK-----------NIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDV 84 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-----------CCCCEEEECSTTSSHHHHHHHHHHHHHGGG-GGGGEEEEETTCTTCHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC-----------CCCeEEEECCCCCCHHHHHHHHHHHHhccc-cccceEEeccccccChHH
Confidence 46899999999998888754 334599999999999999999999874310 123678888877654333
Q ss_pred hhhHHhHHHHHHH-----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 286 IKHFFDSLAALVK-----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 286 ~s~liG~lt~al~-----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
.... +..... .....||+|||++.+++..++.|+++++.. . .++++|+|||..
T Consensus 85 ~~~~---~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~--~-----------~~~~~i~~~~~~------ 142 (226)
T 2chg_A 85 VRHK---IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY--S-----------KSCRFILSCNYV------ 142 (226)
T ss_dssp HHHH---HHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT--T-----------TTEEEEEEESCG------
T ss_pred HHHH---HHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc--C-----------CCCeEEEEeCCh------
Confidence 2222 222222 134579999999999999999999999876 4 467788888853
Q ss_pred hhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcC
Q 036633 361 VMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNA 440 (550)
Q Consensus 361 ~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~ 440 (550)
..+.+.+.+|+. .+.|. |++.+++..++...+.. .+. .+++++++.|+..+
T Consensus 143 ---------------~~~~~~l~~r~~-~i~~~---~~~~~~~~~~l~~~~~~-------~~~---~~~~~~~~~l~~~~ 193 (226)
T 2chg_A 143 ---------------SRIIEPIQSRCA-VFRFK---PVPKEAMKKRLLEICEK-------EGV---KITEDGLEALIYIS 193 (226)
T ss_dssp ---------------GGSCHHHHTTSE-EEECC---CCCHHHHHHHHHHHHHH-------HTC---CBCHHHHHHHHHHH
T ss_pred ---------------hhcCHHHHHhCc-eeecC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHc
Confidence 356788999995 89999 99999999888876643 344 68999999998643
Q ss_pred cccCCCcccHHHHHHcc
Q 036633 441 ARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 441 ~~~~GaN~R~L~~~i~~ 457 (550)
.| |.|.+.+.++.
T Consensus 194 ---~g-~~r~l~~~l~~ 206 (226)
T 2chg_A 194 ---GG-DFRKAINALQG 206 (226)
T ss_dssp ---TT-CHHHHHHHHHH
T ss_pred ---CC-CHHHHHHHHHH
Confidence 26 88988888875
No 25
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.74 E-value=2e-17 Score=172.25 Aligned_cols=199 Identities=16% Similarity=0.211 Sum_probs=141.5
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
..|+|++.+++.+..++...+.....+....+| ..+||+||||||||++|+++|+.+.. +|+.++++++....
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~------~~~~v~~~~l~~~~ 124 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS------TFFSVSSSDLVSKW 124 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC------EEEEEEHHHHHSCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC------CEEEeeHHHHhhhh
Confidence 458999999999988875321000011112244 78999999999999999999999977 99999988653221
Q ss_pred --hhhhHHhHHHHHHHhCCCCeEEeccccccCH-----------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeC
Q 036633 285 --SIKHFFDSLAALVKKRPYSVVLFDKIEKANS-----------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTS 351 (550)
Q Consensus 285 --~~s~liG~lt~al~~~p~~VlllDEIeka~~-----------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~Ts 351 (550)
.....+..+....+....+|||||||+.+.+ .+++.|+..++.- . . ...+++||+||
T Consensus 125 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~--~--~------~~~~v~vI~at 194 (355)
T 2qp9_X 125 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV--G--N------DSQGVLVLGAT 194 (355)
T ss_dssp ---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHC--C-----------CCEEEEEEE
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcc--c--c------cCCCeEEEeec
Confidence 0111122233333444558999999998874 4678888888643 1 0 12467899999
Q ss_pred CCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 352 DLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 352 N~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
|.. ..++|++++||+..+.|. +++.++...|+...+. +. .+.+++.
T Consensus 195 n~~---------------------~~ld~al~rRf~~~i~i~---~P~~~~r~~il~~~l~---------~~-~~~~~~~ 240 (355)
T 2qp9_X 195 NIP---------------------WQLDSAIRRRFERRIYIP---LPDLAARTTMFEINVG---------DT-PSVLTKE 240 (355)
T ss_dssp SCG---------------------GGSCHHHHHTCCEEEECC---CCCHHHHHHHHHHHHT---------TS-CBCCCHH
T ss_pred CCc---------------------ccCCHHHHcccCEEEEeC---CcCHHHHHHHHHHHHh---------hC-CCCCCHH
Confidence 974 357889999999999999 8899999999887773 22 3467889
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++.|+..+. |.++++|..+++.
T Consensus 241 ~l~~la~~t~---G~sg~dl~~l~~~ 263 (355)
T 2qp9_X 241 DYRTLGAMTE---GYSGSDIAVVVKD 263 (355)
T ss_dssp HHHHHHHHTT---TCCHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCCHHHHHHHHHH
Confidence 9999998653 4477999999997
No 26
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.73 E-value=7e-17 Score=173.10 Aligned_cols=200 Identities=16% Similarity=0.215 Sum_probs=138.8
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
..|+|++.++..+...+...+.....+.....| ..+||+||||||||++|+++|..+.+ .+|+.++++++....
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~-----~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-----STFFSISSSDLVSKW 208 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS-----SEEEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC-----CCEEEEeHHHHHhhh
Confidence 458999999999998885321000111111244 79999999999999999999999822 289999998864321
Q ss_pred h--hhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeC
Q 036633 285 S--IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTS 351 (550)
Q Consensus 285 ~--~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~Ts 351 (550)
. ....+..+....+....+|||||||+.+. ..+++.|+..++.- . ....+++||+||
T Consensus 209 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~--~--------~~~~~v~vI~at 278 (444)
T 2zan_A 209 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV--G--------VDNDGILVLGAT 278 (444)
T ss_dssp ---CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCS--S--------CCCSSCEEEEEE
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCc--c--------cCCCCEEEEecC
Confidence 0 00111133334444555899999999873 35778888777643 1 112567899999
Q ss_pred CCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 352 DLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 352 N~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
|.. ..++|+|++||+.++.|. +++.++...|+...+. +. .+.+++.
T Consensus 279 n~~---------------------~~ld~al~rRf~~~i~i~---~P~~~~r~~il~~~l~---------~~-~~~l~~~ 324 (444)
T 2zan_A 279 NIP---------------------WVLDSAIRRRFEKRIYIP---LPEAHARAAMFRLHLG---------ST-QNSLTEA 324 (444)
T ss_dssp SCG---------------------GGSCHHHHTTCCEEEECC---CCCHHHHHHHHHHHHT---------TS-CEECCHH
T ss_pred CCc---------------------cccCHHHHhhcceEEEeC---CcCHHHHHHHHHHHHh---------cC-CCCCCHH
Confidence 974 357899999999888888 8888999988887773 22 4467899
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++.|+..+. |.+|++|..+++.
T Consensus 325 ~l~~la~~t~---G~sgadl~~l~~~ 347 (444)
T 2zan_A 325 DFQELGRKTD---GYSGADISIIVRD 347 (444)
T ss_dssp HHHHHHHHTT---TCCHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCCHHHHHHHHHH
Confidence 9999998543 4466999999987
No 27
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.7e-17 Score=172.65 Aligned_cols=192 Identities=17% Similarity=0.219 Sum_probs=134.0
Q ss_pred CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
+.|.|.+++++.|.+.+...+. .+.|+. -|..+||+||||||||++|+++|..+.. +|+.++++++
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLAkAiA~e~~~------~fi~v~~s~l 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLAKAVANQTSA------TFLRIVGSEL 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHHHHHHHHHTC------EEEEEESGGG
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHHHHHHHHhCC------CEEEEEHHHh
Confidence 5689999999999998865311 123442 2278999999999999999999999987 9999999887
Q ss_pred Cchhh--hhhHHh-HHHHHHHhCCCCeEEeccccccC-----------HH---HHHHHHHhhhhccccccccCCeEeecC
Q 036633 281 TELES--IKHFFD-SLAALVKKRPYSVVLFDKIEKAN-----------SS---ILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 281 ~~~~~--~s~liG-~lt~al~~~p~~VlllDEIeka~-----------~~---v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
..... ..+.+- .|..+-...| +||||||||.+- .. +++.||..+|.- . ...
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP-~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~--~---------~~~ 320 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAP-SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF--D---------DRG 320 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCS-EEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC--C---------CSS
T ss_pred hhccCchHHHHHHHHHHHHHhcCC-cEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc--C---------CCC
Confidence 54321 112222 3333334455 899999999652 23 344555555432 1 125
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS 421 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~ 421 (550)
+++||+|||.. ..++|+|+. |||..|.|. ..+.+....|+..++.+
T Consensus 321 ~ViVIaATNrp---------------------d~LDpALlRpGRfD~~I~v~---lPd~~~R~~Il~~~l~~-------- 368 (437)
T 4b4t_I 321 DVKVIMATNKI---------------------ETLDPALIRPGRIDRKILFE---NPDLSTKKKILGIHTSK-------- 368 (437)
T ss_dssp SEEEEEEESCS---------------------TTCCTTSSCTTTEEEEECCC---CCCHHHHHHHHHHHHTT--------
T ss_pred CEEEEEeCCCh---------------------hhcCHHHhcCCceeEEEEcC---CcCHHHHHHHHHHHhcC--------
Confidence 68899999985 578999985 999999999 88999999999877732
Q ss_pred CCccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 422 KAVIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 422 ~~~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ . +++++ ++.|+.... |.+|.+|+.++..
T Consensus 369 -~-~--l~~dvdl~~LA~~T~---GfSGADI~~l~~e 398 (437)
T 4b4t_I 369 -M-N--LSEDVNLETLVTTKD---DLSGADIQAMCTE 398 (437)
T ss_dssp -S-C--BCSCCCHHHHHHHCC---SCCHHHHHHHHHH
T ss_pred -C-C--CCCcCCHHHHHHhCC---CCCHHHHHHHHHH
Confidence 2 1 22221 566666432 4466899998886
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.72 E-value=9e-17 Score=169.23 Aligned_cols=200 Identities=19% Similarity=0.214 Sum_probs=140.2
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
..|+|++.+++.+...+...............| .++||+||||||||++|+++|..+.. +|+.++|+++....
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~------~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA------TFFNISAASLTSKY 188 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC------EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC------cEEEeeHHHhhccc
Confidence 468999999999998885431100111111234 79999999999999999999999877 99999999876432
Q ss_pred h--hhhHHhHHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeC
Q 036633 285 S--IKHFFDSLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTS 351 (550)
Q Consensus 285 ~--~s~liG~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~Ts 351 (550)
. ....+..+.+..+....+|||||||+.+ ...+++.|+..++.. . -. .-.+++||+||
T Consensus 189 ~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~--~-~~------~~~~v~vI~at 259 (389)
T 3vfd_A 189 VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGV--Q-SA------GDDRVLVMGAT 259 (389)
T ss_dssp ---CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHH--C------------CEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcc--c-cc------CCCCEEEEEec
Confidence 1 1112223333334445589999999987 456788888888755 2 10 11457899999
Q ss_pred CCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 352 DLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 352 N~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
|.. ..+++.+++||+.+|.|. +++.++...|+...+.. .+ ..++++
T Consensus 260 n~~---------------------~~l~~~l~~R~~~~i~i~---~p~~~~r~~il~~~~~~-------~~---~~l~~~ 305 (389)
T 3vfd_A 260 NRP---------------------QELDEAVLRRFIKRVYVS---LPNEETRLLLLKNLLCK-------QG---SPLTQK 305 (389)
T ss_dssp SCG---------------------GGCCHHHHTTCCEEEECC---CCCHHHHHHHHHHHHTT-------SC---CCSCHH
T ss_pred CCc---------------------hhcCHHHHcCcceEEEcC---CcCHHHHHHHHHHHHHh-------cC---CCCCHH
Confidence 963 367889999998889999 88999999998877632 33 368999
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+++.|+.... |.+++.|..+++.
T Consensus 306 ~~~~la~~~~---g~~~~~l~~L~~~ 328 (389)
T 3vfd_A 306 ELAQLARMTD---GYSGSDLTALAKD 328 (389)
T ss_dssp HHHHHHHHTT---TCCHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCCHHHHHHHHHH
Confidence 9999988553 3355788887776
No 29
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.8e-17 Score=173.04 Aligned_cols=193 Identities=18% Similarity=0.180 Sum_probs=135.0
Q ss_pred CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
+.|.|.+++++.|.+.+...+. .+.|+. -|..+||+||||||||++|+++|..+.. +|+.++++++
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~---pprGILLyGPPGTGKTlLAkAiA~e~~~------~fi~vs~s~L 279 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGID---PPKGILLYGPPGTGKTLCARAVANRTDA------TFIRVIGSEL 279 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCSEEEECSCTTSSHHHHHHHHHHHHTC------EEEEEEGGGG
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCC---CCCceEeeCCCCCcHHHHHHHHHhccCC------CeEEEEhHHh
Confidence 5799999999999888754311 133442 2378999999999999999999999988 9999999987
Q ss_pred Cchhh--hhhHHh-HHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEeecC
Q 036633 281 TELES--IKHFFD-SLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 281 ~~~~~--~s~liG-~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
..... ..+.+- .|..+-...| +||||||+|.+.+ .+++.||..|+.. . ...
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP-~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--~---------~~~ 347 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKA-CIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF--D---------PRG 347 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCS-EEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS--C---------CTT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCC-ceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc--C---------CCC
Confidence 54321 112222 3444444455 8999999996531 2445556555533 1 125
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS 421 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~ 421 (550)
+++||+|||.. ..++|+|+. |||..|.|. ..+.++...|++.++.. .
T Consensus 348 ~ViVIaATNrp---------------------d~LDpALlRpGRFD~~I~i~---lPd~~~R~~Ilk~~l~~-------~ 396 (467)
T 4b4t_H 348 NIKVMFATNRP---------------------NTLDPALLRPGRIDRKVEFS---LPDLEGRANIFRIHSKS-------M 396 (467)
T ss_dssp TEEEEEECSCT---------------------TSBCHHHHSTTTCCEEECCC---CCCHHHHHHHHHHHHTT-------S
T ss_pred cEEEEeCCCCc---------------------ccCChhhhccccccEEEEeC---CcCHHHHHHHHHHHhcC-------C
Confidence 67899999975 578999985 999999999 88999999999877732 2
Q ss_pred CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+ .-.++ ++.|+..+- |.+|.+|+.++..
T Consensus 397 ~l-~~dvd---l~~LA~~T~---GfSGADI~~l~~e 425 (467)
T 4b4t_H 397 SV-ERGIR---WELISRLCP---NSTGAELRSVCTE 425 (467)
T ss_dssp CB-CSSCC---HHHHHHHCC---SCCHHHHHHHHHH
T ss_pred CC-CCCCC---HHHHHHHCC---CCCHHHHHHHHHH
Confidence 11 11222 455666432 4466999999886
No 30
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.72 E-value=7.2e-17 Score=166.53 Aligned_cols=212 Identities=15% Similarity=0.134 Sum_probs=133.4
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCCCceeEEecCCCCc--
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DNDNHLIHFDMGNYTE-- 282 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~~li~id~s~~~~-- 282 (550)
..++||+.++..+..+.... .++++||+||||||||++|+++|+.+.... ....+ ++|+....
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~-----------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~~~~~~~~~ 89 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP-----------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP---VSSPNVEMIP 89 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG-----------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT---TCCSSGGGSC
T ss_pred hhccChHHHHHHHHHHhhCC-----------CCceEEEECCCCccHHHHHHHHHHhCcccccccccc---cccccccccc
Confidence 35899999877654443322 235799999999999999999999875300 00012 23332211
Q ss_pred ----------------------hhhhhhHHh--HHHHHHH------------hCCCCeEEeccccccCHHHHHHHHHhhh
Q 036633 283 ----------------------LESIKHFFD--SLAALVK------------KRPYSVVLFDKIEKANSSILNLLLKILK 326 (550)
Q Consensus 283 ----------------------~~~~s~liG--~lt~al~------------~~p~~VlllDEIeka~~~v~~~Ll~~ld 326 (550)
..+.+.++| .+..++. ...++|||||||+++++++++.|+++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le 169 (350)
T 1g8p_A 90 DWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQ 169 (350)
T ss_dssp TTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred chhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHh
Confidence 011234454 1111111 1125799999999999999999999999
Q ss_pred hccccccccCCeEe-ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC-HHHHH
Q 036633 327 TDFNRKATRGIAAF-DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL-DTTRL 404 (550)
Q Consensus 327 ~g~~~~l~d~g~~v-d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~-~e~i~ 404 (550)
+|... +...|... .-.++++|+|+|.. ...|+++|++||+..+.+. +++ .++..
T Consensus 170 ~~~~~-~~~~g~~~~~~~~~~li~~~n~~--------------------~~~l~~~L~~R~~~~~~l~---~~~~~~~~~ 225 (350)
T 1g8p_A 170 SGENV-VERDGLSIRHPARFVLVGSGNPE--------------------EGDLRPQLLDRFGLSVEVL---SPRDVETRV 225 (350)
T ss_dssp HSEEE-ECCTTCCEEEECCEEEEEEECSC--------------------SCCCCHHHHTTCSEEEECC---CCCSHHHHH
T ss_pred cCceE-EEecceEEeeCCceEEEEEeCCC--------------------CCCCCHHHHhhcceEEEcC---CCCcHHHHH
Confidence 98333 33333222 22367899999963 1368999999997668888 774 55555
Q ss_pred HHHHHHHHHH-----------------HHHh---ccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc
Q 036633 405 LLREWACEET-----------------KRRN---NDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 405 ~I~~~~l~~~-----------------~~~l---~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~ 457 (550)
.|+...+... .+++ ..... .+.++++++++|+.+++ .+.+ +.|.+.++++.
T Consensus 226 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ls~~~~~~l~~~~~~~~~~-~~R~~~~ll~~ 297 (350)
T 1g8p_A 226 EVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLP-KVEAPNTALYDCAALCIALGSD-GLRGELTLLRS 297 (350)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGG-GCBCCHHHHHHHHHHHHHSSSC-SHHHHHHHHHH
T ss_pred HHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHHhCCC-CccHHHHHHHH
Confidence 7776632210 0111 11111 34899999999999877 4442 23888888875
No 31
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=6.1e-17 Score=171.76 Aligned_cols=193 Identities=21% Similarity=0.253 Sum_probs=135.3
Q ss_pred CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
+.|.|.+++++.|.+.+...+. .+.|+. -|..+||+||||||||++|+++|..+.. +|+.++++++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~---~prGvLL~GPPGtGKTllAkAiA~e~~~------~~~~v~~s~l 251 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIK---PPKGVLLYGPPGTGKTLLAKAVAATIGA------NFIFSPASGI 251 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTSSHHHHHHHHHHHHTC------EEEEEEGGGT
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEehhhh
Confidence 5689999999999988865321 123442 2278999999999999999999999988 9999999987
Q ss_pred Cchhh--hhhHHh-HHHHHHHhCCCCeEEeccccccC-----------H---HHHHHHHHhhhhccccccccCCeEeecC
Q 036633 281 TELES--IKHFFD-SLAALVKKRPYSVVLFDKIEKAN-----------S---SILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 281 ~~~~~--~s~liG-~lt~al~~~p~~VlllDEIeka~-----------~---~v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
..... ....+. .|..+-...| +||||||||.+. . .+++.||..+|.- . ...
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~~P-~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--~---------~~~ 319 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEHEP-CIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF--D---------NLG 319 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHSCS-EEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS--S---------CTT
T ss_pred ccccchHHHHHHHHHHHHHHhcCC-ceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc--c---------CCC
Confidence 64321 112222 3333434445 999999999652 1 2455667666533 1 125
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS 421 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~ 421 (550)
+++||+|||.. ..++|+|+ +|||..|.|. ..+.+....|+..++.+ .
T Consensus 320 ~vivI~ATNrp---------------------~~LDpAllRpGRfD~~I~i~---lPd~~~R~~Il~~~~~~-------~ 368 (437)
T 4b4t_L 320 QTKIIMATNRP---------------------DTLDPALLRPGRLDRKVEIP---LPNEAGRLEIFKIHTAK-------V 368 (437)
T ss_dssp SSEEEEEESST---------------------TSSCTTTTSTTSEEEEECCC---CCCHHHHHHHHHHHHHT-------S
T ss_pred CeEEEEecCCc---------------------hhhCHHHhCCCccceeeecC---CcCHHHHHHHHHHHhcC-------C
Confidence 67899999975 57899997 4699999999 88999999999887743 1
Q ss_pred CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.. .-.++ ++.|+..+. |.+|.+|+.++..
T Consensus 369 ~~-~~d~d---l~~lA~~t~---G~sGADi~~l~~e 397 (437)
T 4b4t_L 369 KK-TGEFD---FEAAVKMSD---GFNGADIRNCATE 397 (437)
T ss_dssp CB-CSCCC---HHHHHHTCC---SCCHHHHHHHHHH
T ss_pred CC-CcccC---HHHHHHhCC---CCCHHHHHHHHHH
Confidence 11 11222 466676432 4466999999886
No 32
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.8e-17 Score=172.39 Aligned_cols=194 Identities=18% Similarity=0.226 Sum_probs=135.6
Q ss_pred cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
-+.|.|.+++++.|.+.+...+. .+.|+. -|..+||+||||||||++|+++|..+.. +|+.+++++
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllAkAiA~e~~~------~f~~v~~s~ 250 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLARACAAQTNA------TFLKLAAPQ 250 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHHHHHHHHHTC------EEEEEEGGG
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHHHHHHHHhCC------CEEEEehhh
Confidence 35699999999999888765321 133442 2378999999999999999999999987 999999998
Q ss_pred CCchhh--hhhHHh-HHHHHHHhCCCCeEEecccccc-----------CHH---HHHHHHHhhhhccccccccCCeEeec
Q 036633 280 YTELES--IKHFFD-SLAALVKKRPYSVVLFDKIEKA-----------NSS---ILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 280 ~~~~~~--~s~liG-~lt~al~~~p~~VlllDEIeka-----------~~~---v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
+..... ..+.+- .|..+-...| +||||||||.+ +.. +.+.||..+|.- . . -
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP-~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~--~---~------~ 318 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAP-TIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF--S---S------D 318 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCS-EEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS--C---S------S
T ss_pred hhhcccchHHHHHHHHHHHHHhcCC-eEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc--C---C------C
Confidence 754321 112222 3334444566 89999999854 123 345566666532 1 1 1
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND 420 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~ 420 (550)
.+++||+|||.. ..++|+|+. |||..|.|. +.+.+....|++.++.+
T Consensus 319 ~~ViVIaaTNrp---------------------~~LD~AllRpGRfD~~I~i~---lPd~~~R~~Il~~~~~~------- 367 (434)
T 4b4t_M 319 DRVKVLAATNRV---------------------DVLDPALLRSGRLDRKIEFP---LPSEDSRAQILQIHSRK------- 367 (434)
T ss_dssp CSSEEEEECSSC---------------------CCCCTTTCSTTSEEEEEECC---CCCHHHHHHHHHHHHHH-------
T ss_pred CCEEEEEeCCCc---------------------hhcCHhHhcCCceeEEEEeC---CcCHHHHHHHHHHHhcC-------
Confidence 467899999975 578999976 999999999 88999999999887754
Q ss_pred CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
... .-.++ ++.|+..+- |.+|.+|+.++..
T Consensus 368 ~~~-~~dvd---l~~lA~~t~---G~sGADi~~l~~e 397 (434)
T 4b4t_M 368 MTT-DDDIN---WQELARSTD---EFNGAQLKAVTVE 397 (434)
T ss_dssp SCB-CSCCC---HHHHHHHCS---SCCHHHHHHHHHH
T ss_pred CCC-CCcCC---HHHHHHhCC---CCCHHHHHHHHHH
Confidence 111 11222 456666432 4466999999986
No 33
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=8.3e-17 Score=166.11 Aligned_cols=190 Identities=16% Similarity=0.224 Sum_probs=140.6
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
-..++||+++++.+..++... ++++++|+||||||||++|+++++.+.........++.++++......
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~-----------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSA-----------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS 104 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCT-----------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH
T ss_pred HHHhhCCHHHHHHHHHHHhcC-----------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH
Confidence 367999999999988887654 344599999999999999999999975300012357788887754333
Q ss_pred hhhhHHhHHHHH-----------HH-hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCC
Q 036633 285 SIKHFFDSLAAL-----------VK-KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSD 352 (550)
Q Consensus 285 ~~s~liG~lt~a-----------l~-~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN 352 (550)
.+...+..+... .. ..++.||+|||++.+++..++.|+++++++ . .++.||+++|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~--~-----------~~~~~il~~~ 171 (353)
T 1sxj_D 105 IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY--S-----------GVTRFCLICN 171 (353)
T ss_dssp HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT--T-----------TTEEEEEEES
T ss_pred HHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc--C-----------CCceEEEEeC
Confidence 332222221110 00 123469999999999999999999999987 5 4566788887
Q ss_pred CChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHH
Q 036633 353 LKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSA 432 (550)
Q Consensus 353 ~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a 432 (550)
.. ..+.|.+.+|+ ..+.|. |++.+++..++...+. ..++ .+++++
T Consensus 172 ~~---------------------~~l~~~l~sR~-~~i~~~---~~~~~~~~~~l~~~~~-------~~~~---~i~~~~ 216 (353)
T 1sxj_D 172 YV---------------------TRIIDPLASQC-SKFRFK---ALDASNAIDRLRFISE-------QENV---KCDDGV 216 (353)
T ss_dssp CG---------------------GGSCHHHHHHS-EEEECC---CCCHHHHHHHHHHHHH-------TTTC---CCCHHH
T ss_pred ch---------------------hhCcchhhccC-ceEEeC---CCCHHHHHHHHHHHHH-------HhCC---CCCHHH
Confidence 53 24678899999 589999 9999999988887663 2444 789999
Q ss_pred HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 433 LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 433 ~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+++|+..++ | |.|.+.+.++.
T Consensus 217 l~~l~~~~~---G-~~r~~~~~l~~ 237 (353)
T 1sxj_D 217 LERILDISA---G-DLRRGITLLQS 237 (353)
T ss_dssp HHHHHHHTS---S-CHHHHHHHHHH
T ss_pred HHHHHHHcC---C-CHHHHHHHHHH
Confidence 999998765 6 88988888875
No 34
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=8.4e-17 Score=163.96 Aligned_cols=185 Identities=16% Similarity=0.261 Sum_probs=138.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++||+++++.+...+... ++.+++|+||||||||++|+++++.+.+.+ ...+++.++++.......
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~-----------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~ 92 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG-----------SMPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDERGINV 92 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-----------CCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHHHHHT
T ss_pred HHhhCCHHHHHHHHHHHHcC-----------CCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccccCchHH
Confidence 46999999999988877654 344699999999999999999999986500 012477788765422111
Q ss_pred hhhHHhHHHHHHHh-----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 286 IKHFFDSLAALVKK-----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 286 ~s~liG~lt~al~~-----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
+.. .+.+.... .++.||+|||++.++++.++.|++++++. . .+++||+|||..
T Consensus 93 ~~~---~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~--~-----------~~~~~i~~~~~~------ 150 (327)
T 1iqp_A 93 IRE---KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF--S-----------SNVRFILSCNYS------ 150 (327)
T ss_dssp THH---HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT--T-----------TTEEEEEEESCG------
T ss_pred HHH---HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc--C-----------CCCeEEEEeCCc------
Confidence 111 22222222 34679999999999999999999999987 4 467788888853
Q ss_pred hhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcC
Q 036633 361 VMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNA 440 (550)
Q Consensus 361 ~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~ 440 (550)
..+.+.+.+|+ .++.|. |++.+++..++...+. ..|+ .++++++++|+..+
T Consensus 151 ---------------~~l~~~l~sr~-~~~~~~---~l~~~~~~~~l~~~~~-------~~~~---~~~~~~~~~l~~~~ 201 (327)
T 1iqp_A 151 ---------------SKIIEPIQSRC-AIFRFR---PLRDEDIAKRLRYIAE-------NEGL---ELTEEGLQAILYIA 201 (327)
T ss_dssp ---------------GGSCHHHHHTE-EEEECC---CCCHHHHHHHHHHHHH-------TTTC---EECHHHHHHHHHHH
T ss_pred ---------------cccCHHHHhhC-cEEEec---CCCHHHHHHHHHHHHH-------hcCC---CCCHHHHHHHHHHC
Confidence 34678899999 589999 9999999988877663 2454 68999999999754
Q ss_pred cccCCCcccHHHHHHcc
Q 036633 441 ARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 441 ~~~~GaN~R~L~~~i~~ 457 (550)
. | |.|.+.+.++.
T Consensus 202 ~---g-~~r~~~~~l~~ 214 (327)
T 1iqp_A 202 E---G-DMRRAINILQA 214 (327)
T ss_dssp T---T-CHHHHHHHHHH
T ss_pred C---C-CHHHHHHHHHH
Confidence 2 6 77888887765
No 35
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.71 E-value=4.7e-17 Score=165.28 Aligned_cols=188 Identities=15% Similarity=0.253 Sum_probs=138.8
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++||+++++.+...+... ++.+++|+||||||||++|+++++.+.+.+ ...+++.+|++.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-----------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~ 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK-----------NIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDV 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT-----------CCCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHHHCEEEETTSTTCTTT
T ss_pred HHHhCCHHHHHHHHHHHhCC-----------CCCeEEEECcCCcCHHHHHHHHHHHhcCCc-ccCCeEEEeCccccChHH
Confidence 35899999998876665533 333599999999999999999999985410 123688899887654333
Q ss_pred hhhHHhHHHHH--HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhh
Q 036633 286 IKHFFDSLAAL--VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVML 363 (550)
Q Consensus 286 ~s~liG~lt~a--l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~ 363 (550)
+...+..+... +...++.||+|||++.++++.++.|++++++. . .++++|++||..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~--~-----------~~~~~i~~~~~~--------- 142 (319)
T 2chq_A 85 VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY--S-----------KSCRFILSCNYV--------- 142 (319)
T ss_dssp SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSS--S-----------SSEEEEEEESCG---------
T ss_pred HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhc--C-----------CCCeEEEEeCCh---------
Confidence 33332222110 01134579999999999999999999999876 4 567788888853
Q ss_pred hhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCccc
Q 036633 364 TATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARK 443 (550)
Q Consensus 364 ~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~ 443 (550)
..+.|.+.+|+ .++.|. |++.+++..++...+. ..|+ .+++++++.|+..+
T Consensus 143 ------------~~l~~~l~sr~-~~i~~~---~~~~~~~~~~l~~~~~-------~~~~---~i~~~~l~~l~~~~--- 193 (319)
T 2chq_A 143 ------------SRIIEPIQSRC-AVFRFK---PVPKEAMKKRLLEICE-------KEGV---KITEDGLEALIYIS--- 193 (319)
T ss_dssp ------------GGSCHHHHTTC-EEEECC---CCCHHHHHHHHHHHHH-------TTCC---CBCHHHHHHHHHTT---
T ss_pred ------------hhcchHHHhhC-eEEEec---CCCHHHHHHHHHHHHH-------HcCC---CCCHHHHHHHHHHc---
Confidence 35778999999 599999 9999999888877663 2444 78999999999743
Q ss_pred CCCcccHHHHHHcc
Q 036633 444 YGQNGEGLKRWMDQ 457 (550)
Q Consensus 444 ~GaN~R~L~~~i~~ 457 (550)
.| |.|.+.+.++.
T Consensus 194 ~G-~~r~~~~~l~~ 206 (319)
T 2chq_A 194 GG-DFRKAINALQG 206 (319)
T ss_dssp TT-CHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHH
Confidence 26 88888887774
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.71 E-value=2.5e-16 Score=163.84 Aligned_cols=202 Identities=17% Similarity=0.169 Sum_probs=136.6
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL 283 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~ 283 (550)
-+.++||+.++..+....... ..|. .| .++||+||||||||++|+++|+.+.. ..+++.++++.+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~---~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~~----~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMI---REGK----IAGRAVLIAGQPGTGKTAIAMGMAQALGP----DTPFTAIAGSEIFSL 111 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHH---HTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHCS----SCCEEEEEGGGGSCS
T ss_pred hhhccChHHHHHHHHHHHHHH---HcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhcc----cCCcccccchhhhhc
Confidence 457999999988765555443 2222 23 69999999999999999999999854 347888887652211
Q ss_pred hh----------------------------------------------------hhhHHhHHHHHHH----hCC----CC
Q 036633 284 ES----------------------------------------------------IKHFFDSLAALVK----KRP----YS 303 (550)
Q Consensus 284 ~~----------------------------------------------------~s~liG~lt~al~----~~p----~~ 303 (550)
.. ...+...+..+.. ... .+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 10 0011112222221 111 26
Q ss_pred eEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh
Q 036633 304 VVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL 383 (550)
Q Consensus 304 VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll 383 (550)
||||||++.++++.++.|++.+++. . ... +++++|.+...+.....+ ....++|+|+
T Consensus 192 vl~IDEi~~l~~~~~~~L~~~le~~--~-----------~~~-~ii~t~~~~~~i~~t~~~---------~~~~l~~~l~ 248 (368)
T 3uk6_A 192 VLFIDEVHMLDIESFSFLNRALESD--M-----------APV-LIMATNRGITRIRGTSYQ---------SPHGIPIDLL 248 (368)
T ss_dssp EEEEESGGGSBHHHHHHHHHHTTCT--T-----------CCE-EEEEESCSEEECBTSSCE---------EETTCCHHHH
T ss_pred eEEEhhccccChHHHHHHHHHhhCc--C-----------CCe-eeeecccceeeeeccCCC---------CcccCCHHHH
Confidence 9999999999999999999999887 4 222 344444321110000000 0135789999
Q ss_pred hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 384 KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 384 ~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+|| .++.|. |++.+++..++...+.. .++ .++++++++|+..+++ | |+|.+.++++.
T Consensus 249 sR~-~~i~~~---~~~~~e~~~il~~~~~~-------~~~---~~~~~~l~~l~~~~~~--G-~~r~~~~ll~~ 305 (368)
T 3uk6_A 249 DRL-LIVSTT---PYSEKDTKQILRIRCEE-------EDV---EMSEDAYTVLTRIGLE--T-SLRYAIQLITA 305 (368)
T ss_dssp TTE-EEEEEC---CCCHHHHHHHHHHHHHH-------TTC---CBCHHHHHHHHHHHHH--S-CHHHHHHHHHH
T ss_pred hhc-cEEEec---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHhcC--C-CHHHHHHHHHH
Confidence 999 568999 99999999999887753 444 7899999999986653 5 78999999986
No 37
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.71 E-value=2.8e-16 Score=158.81 Aligned_cols=198 Identities=20% Similarity=0.236 Sum_probs=139.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhh---hcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAA---KKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~---~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
..++|++.+++.+...+...... ..++ ..| .+++|+||||||||++|+++|..+.. +++.++|+++.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~---~~~~~~vll~Gp~GtGKT~la~~la~~~~~------~~~~i~~~~l~ 91 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGL---RAPAKGLLLFGPPGNGKTLLARAVATECSA------TFLNISAASLT 91 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGG---GCCCSEEEEESSSSSCHHHHHHHHHHHTTC------EEEEEESTTTS
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcC---CCCCCeEEEECcCCCCHHHHHHHHHHHhCC------CeEEeeHHHHh
Confidence 45899999999998888653100 1112 133 79999999999999999999999876 99999998875
Q ss_pred chhh--hhhHHhHHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633 282 ELES--IKHFFDSLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLII 348 (550)
Q Consensus 282 ~~~~--~s~liG~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI 348 (550)
.... ....+..+.........+||||||++.+ ...+++.|+..++.. . .. ....+++||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~--~-~~-----~~~~~v~vi 163 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGL--P-GN-----PDGDRIVVL 163 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHC--C------------CEEEE
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcc--c-cc-----CCCCcEEEE
Confidence 4321 1111222233334445589999999876 356778888888755 2 11 112457889
Q ss_pred EeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 036633 349 MTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCP 428 (550)
Q Consensus 349 ~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~ 428 (550)
+|||.. ..+.|.+++||+..+.|. +++.++...|+...+.. .+. .+
T Consensus 164 ~~tn~~---------------------~~l~~~l~~R~~~~i~~~---~p~~~~r~~il~~~~~~-------~~~---~~ 209 (297)
T 3b9p_A 164 AATNRP---------------------QELDEAALRRFTKRVYVS---LPDEQTRELLLNRLLQK-------QGS---PL 209 (297)
T ss_dssp EEESCG---------------------GGBCHHHHHHCCEEEECC---CCCHHHHHHHHHHHHGG-------GSC---CS
T ss_pred eecCCh---------------------hhCCHHHHhhCCeEEEeC---CcCHHHHHHHHHHHHHh-------cCC---CC
Confidence 999963 356888999999888888 77888888888776632 333 57
Q ss_pred CHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 429 STSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 429 ~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
++++++.|+..+. |.+++.|+.+++.
T Consensus 210 ~~~~~~~la~~~~---g~~~~~l~~l~~~ 235 (297)
T 3b9p_A 210 DTEALRRLAKITD---GYSGSDLTALAKD 235 (297)
T ss_dssp CHHHHHHHHHHTT---TCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC---CCCHHHHHHHHHH
Confidence 8999999998653 4355889888886
No 38
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=6.8e-17 Score=171.11 Aligned_cols=195 Identities=20% Similarity=0.219 Sum_probs=134.5
Q ss_pred cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
-+.|.|.+++++.|.+.+...+. .+.|+. -|..+||+||||||||++|+++|..+.. +|+.+++++
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~---~prGiLL~GPPGtGKT~lakAiA~~~~~------~~~~v~~~~ 241 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGID---PPRGVLLYGPPGTGKTMLVKAVANSTKA------AFIRVNGSE 241 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTTTHHHHHHHHHHHHTC------EEEEEEGGG
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCceEEEECCCCCCHHHHHHHHHHHhCC------CeEEEecch
Confidence 46799999999999888865321 123442 2368999999999999999999999988 999999998
Q ss_pred CCchhh--hhhHHh-HHHHHHHhCCCCeEEeccccccC--------------HHHHHHHHHhhhhccccccccCCeEeec
Q 036633 280 YTELES--IKHFFD-SLAALVKKRPYSVVLFDKIEKAN--------------SSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 280 ~~~~~~--~s~liG-~lt~al~~~p~~VlllDEIeka~--------------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
+..... ....+. .|..+-...| +||||||+|.+. ..+.+.||..+|.- . ..
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~~aP-~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~--~---------~~ 309 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLARENAP-SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF--D---------QS 309 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHHTCS-EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS--C---------SS
T ss_pred hhccccchhHHHHHHHHHHHHHcCC-CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC--C---------CC
Confidence 754321 111222 3344444455 999999998531 23567777777642 1 12
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND 420 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~ 420 (550)
.+++||+|||.. ..++|+|+. |||..|.|. .+.+.++...|+..++.+
T Consensus 310 ~~v~vI~aTN~~---------------------~~LD~AllRpGRfd~~I~~p--~lPd~~~R~~Il~~~~~~------- 359 (428)
T 4b4t_K 310 TNVKVIMATNRA---------------------DTLDPALLRPGRLDRKIEFP--SLRDRRERRLIFGTIASK------- 359 (428)
T ss_dssp CSEEEEEEESCS---------------------SSCCHHHHSSSSEEEEEECC--SSCCHHHHHHHHHHHHHS-------
T ss_pred CCEEEEEecCCh---------------------hhcChhhhcCCcceEEEEcC--CCCCHHHHHHHHHHHhcC-------
Confidence 568899999975 578999985 999999994 034778888888877642
Q ss_pred CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
..+ .-.++ ++.|+..+. |.+|.+|+.+++.
T Consensus 360 ~~l-~~~~d---l~~lA~~t~---G~sgadi~~l~~e 389 (428)
T 4b4t_K 360 MSL-APEAD---LDSLIIRND---SLSGAVIAAIMQE 389 (428)
T ss_dssp SCB-CTTCC---HHHHHHHTT---TCCHHHHHHHHHH
T ss_pred CCC-CcccC---HHHHHHHCC---CCCHHHHHHHHHH
Confidence 211 11122 566666432 4466999999986
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.70 E-value=2.7e-16 Score=163.78 Aligned_cols=200 Identities=16% Similarity=0.160 Sum_probs=139.9
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
..++|++.+++.+...+...+.....+....++ .++||+||||||||++|+++|+.+.. +|+.++|+++....
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~------~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA------TFFSISASSLTSKW 157 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC------EEEEEEGGGGCCSS
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC------eEEEEehHHhhccc
Confidence 458999999999998886531000001111233 78999999999999999999999866 99999999875432
Q ss_pred h--hhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeC
Q 036633 285 S--IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTS 351 (550)
Q Consensus 285 ~--~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~Ts 351 (550)
. ....+..+....+....+|||||||+.+. ..+++.|+..++.. . .. .-.+++||+||
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~--~-~~------~~~~v~vI~at 228 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGA--T-TS------SEDRILVVGAT 228 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcc--c-cc------CCCCEEEEEec
Confidence 1 11122233333444555899999998763 35678888888754 2 11 11467789999
Q ss_pred CCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633 352 DLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTS 431 (550)
Q Consensus 352 N~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~ 431 (550)
|.. ..+.+++++||+..+.|. +++.++...++...+.. .+ +.++++
T Consensus 229 n~~---------------------~~l~~~l~~Rf~~~i~i~---~p~~~~r~~il~~~~~~-------~~---~~l~~~ 274 (357)
T 3d8b_A 229 NRP---------------------QEIDEAARRRLVKRLYIP---LPEASARKQIVINLMSK-------EQ---CCLSEE 274 (357)
T ss_dssp SCG---------------------GGBCHHHHTTCCEEEECC---CCCHHHHHHHHHHHHHT-------SC---BCCCHH
T ss_pred CCh---------------------hhCCHHHHhhCceEEEeC---CcCHHHHHHHHHHHHhh-------cC---CCccHH
Confidence 963 356788999998888888 88889999888877632 33 367899
Q ss_pred HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 432 ALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 432 a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++.|+..+. |.+++.|+.+++.
T Consensus 275 ~l~~la~~t~---G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 275 EIEQIVQQSD---AFSGADMTQLCRE 297 (357)
T ss_dssp HHHHHHHHTT---TCCHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCCHHHHHHHHHH
Confidence 9999988543 3355888888876
No 40
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.69 E-value=1.4e-16 Score=163.74 Aligned_cols=200 Identities=15% Similarity=0.157 Sum_probs=141.0
Q ss_pred HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE
Q 036633 195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH 274 (550)
Q Consensus 195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~ 274 (550)
+.+..+...+...++||++++..+..++... .+++|+||||||||++|+++|+.+.. ++.+
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~-------------~~vll~G~pGtGKT~la~~la~~~~~------~~~~ 76 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTG-------------GHILLEGVPGLAKTLSVNTLAKTMDL------DFHR 76 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT-------------CCEEEESCCCHHHHHHHHHHHHHTTC------CEEE
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHcC-------------CeEEEECCCCCcHHHHHHHHHHHhCC------CeEE
Confidence 3466778888899999999999888777643 48999999999999999999999876 8999
Q ss_pred EecCCCCchhhhhhHHhHH-----HHH--HHhCC--CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC-C
Q 036633 275 FDMGNYTELESIKHFFDSL-----AAL--VKKRP--YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT-N 344 (550)
Q Consensus 275 id~s~~~~~~~~s~liG~l-----t~a--l~~~p--~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~-~ 344 (550)
++|+.... .+.++|.. ... ....+ .+|+||||++++++.+++.|++.++++ . ++..|..+.+. +
T Consensus 77 i~~~~~~~---~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~--~-~~~~g~~~~~~~~ 150 (331)
T 2r44_A 77 IQFTPDLL---PSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEK--Q-VTIGDTTYPLDNP 150 (331)
T ss_dssp EECCTTCC---HHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHS--E-EEETTEEEECCSS
T ss_pred EecCCCCC---hhhcCCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcC--c-eeeCCEEEECCCC
Confidence 99864332 12233300 000 00111 279999999999999999999999999 5 54455554444 4
Q ss_pred eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH----------
Q 036633 345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET---------- 414 (550)
Q Consensus 345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~---------- 414 (550)
.++|+|+|..... . ...++++|++||+..+.|. +++.++...|+...+...
T Consensus 151 ~~viat~np~~~~--~--------------~~~l~~~l~~Rf~~~i~i~---~p~~~~~~~il~~~~~~~~~~~~~~~~~ 211 (331)
T 2r44_A 151 FLVLATQNPVEQE--G--------------TYPLPEAQVDRFMMKIHLT---YLDKESELEVMRRVSNMNFNYQVQKIVS 211 (331)
T ss_dssp CEEEEEECTTCCS--C--------------CCCCCHHHHTTSSEEEECC---CCCHHHHHHHHHHHHCTTCCCCCCCCSC
T ss_pred EEEEEecCCCccc--C--------------cccCCHHHHhheeEEEEcC---CCCHHHHHHHHHhccccCcchhccccCC
Confidence 6777788853100 0 0137899999997679999 889999999988776320
Q ss_pred ---HHHhccCCCccccCCHHHHHHHHhc
Q 036633 415 ---KRRNNDSKAVIVCPSTSALVHIASN 439 (550)
Q Consensus 415 ---~~~l~~~~~~~l~~~~~a~~~L~~~ 439 (550)
...+..... .+.+++++++++++.
T Consensus 212 ~~~i~~~~~~~~-~v~~~~~~~~~i~~~ 238 (331)
T 2r44_A 212 KNDVLEIRNEIN-KVTISESLEKYIIEL 238 (331)
T ss_dssp HHHHHHHHHHHH-TCBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCCCCHHHHHHHHHH
Confidence 000000001 347899999999764
No 41
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.69 E-value=1.2e-15 Score=150.95 Aligned_cols=197 Identities=20% Similarity=0.217 Sum_probs=125.2
Q ss_pred CcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
+.++|++.+++.+.+.+..... ...|. ..|.++||+||||||||++|+++|+.+.. +++.++|+.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~---~~~~~vll~G~~GtGKT~la~~la~~~~~------~~~~~~~~~~~ 76 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGA---KVPKGALLLGPPGCGKTLLAKAVATEAQV------PFLAMAGAEFV 76 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------C---CCCCEEEEESCTTSSHHHHHHHHHHHHTC------CEEEEETTTTS
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCC---CCCceEEEECCCCCCHHHHHHHHHHHhCC------CEEEechHHHH
Confidence 5689999999888776643200 00111 23378999999999999999999999877 99999999875
Q ss_pred chhh---hhhHHhHHHHHHHhCCCCeEEecccccc------------CHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633 282 ELES---IKHFFDSLAALVKKRPYSVVLFDKIEKA------------NSSILNLLLKILKTDFNRKATRGIAAFDLTNTL 346 (550)
Q Consensus 282 ~~~~---~s~liG~lt~al~~~p~~VlllDEIeka------------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i 346 (550)
.... ...+-+.+..+ .....+||||||++.+ +...+..|.+++..- ..+. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~a-~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~------~~~~~~ 147 (262)
T 2qz4_A 77 EVIGGLGAARVRSLFKEA-RARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEM--DGMG------TTDHVI 147 (262)
T ss_dssp SSSTTHHHHHHHHHHHHH-HHTCSEEEEEECC-------------------CHHHHHHHHHH--HTCC------TTCCEE
T ss_pred hhccChhHHHHHHHHHHH-HhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHh--hCcC------CCCCEE
Confidence 4321 11111233333 3344589999999998 333444444444321 0010 114678
Q ss_pred EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633 347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV 424 (550)
Q Consensus 347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~ 424 (550)
+|+|||.. ..+++++++ |++..+.|. +++.++...|+..++.. .+.
T Consensus 148 vi~~tn~~---------------------~~ld~~l~~~~R~~~~i~i~---~p~~~~r~~il~~~~~~-------~~~- 195 (262)
T 2qz4_A 148 VLASTNRA---------------------DILDGALMRPGRLDRHVFID---LPTLQERREIFEQHLKS-------LKL- 195 (262)
T ss_dssp EEEEESCG---------------------GGGGSGGGSTTSCCEEEECC---SCCHHHHHHHHHHHHHH-------TTC-
T ss_pred EEecCCCh---------------------hhcCHHHhcCCcCCeEEEeC---CcCHHHHHHHHHHHHHh-------CCC-
Confidence 99999964 245677887 999999999 88999999999888754 333
Q ss_pred cccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 425 IVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 425 ~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
..+++. ...|+.... |.++|.|+.+++.
T Consensus 196 --~~~~~~~~~~l~~~~~---g~~~~~l~~l~~~ 224 (262)
T 2qz4_A 196 --TQSSTFYSQRLAELTP---GFSGADIANICNE 224 (262)
T ss_dssp --CBTHHHHHHHHHHTCT---TCCHHHHHHHHHH
T ss_pred --CcchhhHHHHHHHHCC---CCCHHHHHHHHHH
Confidence 444443 466776432 3355888888876
No 42
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.68 E-value=2.7e-16 Score=170.19 Aligned_cols=223 Identities=15% Similarity=0.136 Sum_probs=151.8
Q ss_pred HHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633 194 EERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI 273 (550)
Q Consensus 194 ~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li 273 (550)
.+.+..+...+...|+||++++..+..++... +++||+||||||||++|++||..+.. ..+|.
T Consensus 10 ~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~-------------~~VLL~GpPGtGKT~LAraLa~~l~~----~~~f~ 72 (500)
T 3nbx_X 10 AERISRLSSSLEKGLYERSHAIRLCLLAALSG-------------ESVFLLGPPGIAKSLIARRLKFAFQN----ARAFE 72 (500)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT-------------CEEEEECCSSSSHHHHHHHGGGGBSS----CCEEE
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-------------CeeEeecCchHHHHHHHHHHHHHHhh----hhHHH
Confidence 35678889999999999999999887777644 58999999999999999999998743 44777
Q ss_pred EEecCCCCchhhhhhHHhH--H-----HHHHHh-C-----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEe
Q 036633 274 HFDMGNYTELESIKHFFDS--L-----AALVKK-R-----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340 (550)
Q Consensus 274 ~id~s~~~~~~~~s~liG~--l-----t~al~~-~-----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~v 340 (550)
.+++... +.+.++|. . .+.+.. . ..+|||||||+++++.+++.|++++++| . ++..|...
T Consensus 73 ~~~~~~~----t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~--~-v~i~G~~~ 145 (500)
T 3nbx_X 73 YLMTRFS----TPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINER--Q-FRNGAHVE 145 (500)
T ss_dssp EECCTTC----CHHHHHCCBC----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSS--E-EECSSSEE
T ss_pred HHHHhcC----CHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHH--h-ccCCCCcC
Confidence 7776532 12455651 1 111111 1 1358999999999999999999999999 6 55555556
Q ss_pred ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH-HHHHHHHHHHH--------
Q 036633 341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD-TTRLLLREWAC-------- 411 (550)
Q Consensus 341 d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~-e~i~~I~~~~l-------- 411 (550)
.....++|+|||.-.+ ...|.+++++||...+.+. +++. ++...|+....
T Consensus 146 ~~~~~~iI~ATN~lpe------------------~~~~~~aLldRF~~~i~v~---~p~~~ee~~~IL~~~~~~~~~~~~ 204 (500)
T 3nbx_X 146 KIPMRLLVAASNELPE------------------ADSSLEALYDRMLIRLWLD---KVQDKANFRSMLTSQQDENDNPVP 204 (500)
T ss_dssp ECCCCEEEEEESSCCC------------------TTCTTHHHHTTCCEEEECC---SCCCHHHHHHHHTCCCCTTSCCSC
T ss_pred CcchhhhhhccccCCC------------------ccccHHHHHHHHHHHHHHH---HhhhhhhHHHHHhcccccCCCCCC
Confidence 6666567888884221 1357789999996667776 6665 66677765432
Q ss_pred ----------HHHHHHhccCCCccccCCHHHHHHHHhcC-----c-ccCCCcccHHHHHHcchhhHHHHHhh
Q 036633 412 ----------EETKRRNNDSKAVIVCPSTSALVHIASNA-----A-RKYGQNGEGLKRWMDQRPSADHVIDK 467 (550)
Q Consensus 412 ----------~~~~~~l~~~~~~~l~~~~~a~~~L~~~~-----~-~~~GaN~R~L~~~i~~~~la~~~l~~ 467 (550)
..+...+ . .+.+++++.+++++.. . ...|.+.|.+..++.. .-+.+.+.|
T Consensus 205 ~~~~~~~e~l~~~~~~~--~---~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~-A~A~A~l~g 270 (500)
T 3nbx_X 205 DALQVTDEEYERWQKEI--G---EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRL-LQASAFFSG 270 (500)
T ss_dssp TTTSBCHHHHHHHHHHH--T---TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHH-HHHHHHHTT
T ss_pred ccceecHHHHHHHHhcC--C---cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHH-HHHHHhhcC
Confidence 1111111 2 3478999999998643 1 1123355877777764 334444544
No 43
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.68 E-value=4.1e-16 Score=150.53 Aligned_cols=183 Identities=20% Similarity=0.231 Sum_probs=132.2
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------ 267 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------ 267 (550)
..++|++.+++.+...+... + .|.+++|+||+|||||++|+.+++.+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~---~-------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG---R-------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 92 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT---C-------CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTT
T ss_pred HHHhCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhcc
Confidence 46899999999998888754 1 2368999999999999999999998754100
Q ss_pred CCCceeEEecCCCCchhhhhhHHhHHHHHHHh-------CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEe
Q 036633 268 NDNHLIHFDMGNYTELESIKHFFDSLAALVKK-------RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340 (550)
Q Consensus 268 ~~~~li~id~s~~~~~~~~s~liG~lt~al~~-------~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~v 340 (550)
....++.++.+.... ...+...+.. ....||+|||++.+++..++.|++.+++. .
T Consensus 93 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~--~--------- 154 (250)
T 1njg_A 93 RFVDLIEIDAASRTK-------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP--P--------- 154 (250)
T ss_dssp CCSSEEEEETTCGGG-------HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC--C---------
T ss_pred CCcceEEecCccccc-------HHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC--C---------
Confidence 000123333222111 1112222221 22469999999999999999999999875 4
Q ss_pred ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633 341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND 420 (550)
Q Consensus 341 d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~ 420 (550)
.++++|+|||.. ..+.+.+.+|+ ..+.|. |++.+++..++...+..
T Consensus 155 --~~~~~i~~t~~~---------------------~~~~~~l~~r~-~~i~l~---~l~~~e~~~~l~~~~~~------- 200 (250)
T 1njg_A 155 --EHVKFLLATTDP---------------------QKLPVTILSRC-LQFHLK---ALDVEQIRHQLEHILNE------- 200 (250)
T ss_dssp --TTEEEEEEESCG---------------------GGSCHHHHTTS-EEEECC---CCCHHHHHHHHHHHHHH-------
T ss_pred --CceEEEEEeCCh---------------------HhCCHHHHHHh-hhccCC---CCCHHHHHHHHHHHHHh-------
Confidence 456788888752 35677889998 789999 99999999998887753
Q ss_pred CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+. .+++++++.|++.+- | |.|.+.+.++.
T Consensus 201 ~~~---~~~~~~~~~l~~~~~---G-~~~~~~~~~~~ 230 (250)
T 1njg_A 201 EHI---AHEPRALQLLARAAE---G-SLRDALSLTDQ 230 (250)
T ss_dssp TTC---CBCHHHHHHHHHHHT---T-CHHHHHHHHHH
T ss_pred cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 444 789999999988652 6 88988888875
No 44
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.68 E-value=4.3e-16 Score=158.36 Aligned_cols=188 Identities=22% Similarity=0.310 Sum_probs=131.7
Q ss_pred CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
..|+|++.+++.+...+...+. ...|+. .|..+||+||||||||++|+++|..+.. +++.++++++
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~---~~~~vLL~Gp~GtGKT~la~ala~~~~~------~~i~v~~~~l 85 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT---PSKGVLFYGPPGCGKTLLAKAIANECQA------NFISIKGPEL 85 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCSEEEEECSSSSSHHHHHHHHHHHTTC------EEEEECHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC---CCceEEEECCCCcCHHHHHHHHHHHhCC------CEEEEEhHHH
Confidence 4599999999999988865310 012221 2268999999999999999999999866 9999998775
Q ss_pred CchhhhhhHHh--------HHHHHHHhCCCCeEEeccccccCHH--------------HHHHHHHhhhhccccccccCCe
Q 036633 281 TELESIKHFFD--------SLAALVKKRPYSVVLFDKIEKANSS--------------ILNLLLKILKTDFNRKATRGIA 338 (550)
Q Consensus 281 ~~~~~~s~liG--------~lt~al~~~p~~VlllDEIeka~~~--------------v~~~Ll~~ld~g~~~~l~d~g~ 338 (550)
. +.++| .+..+ +....+|||||||+.+.+. +++.|+..++.- .
T Consensus 86 ~-----~~~~g~~~~~~~~~f~~a-~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~--~------- 150 (301)
T 3cf0_A 86 L-----TMWFGESEANVREIFDKA-RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM--S------- 150 (301)
T ss_dssp H-----HHHHTTCTTHHHHHHHHH-HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS--C-------
T ss_pred H-----hhhcCchHHHHHHHHHHH-HhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc--c-------
Confidence 3 23333 33333 3334489999999976543 578888888743 1
Q ss_pred EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHH
Q 036633 339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKR 416 (550)
Q Consensus 339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~ 416 (550)
.-.+++||+|||.. ..++|+++. |++.+|.|. +++.++...|+..++..
T Consensus 151 --~~~~v~vi~atn~~---------------------~~ld~al~r~gRf~~~i~i~---~p~~~~r~~il~~~l~~--- 201 (301)
T 3cf0_A 151 --TKKNVFIIGATNRP---------------------DIIDPAILRPGRLDQLIYIP---LPDEKSRVAILKANLRK--- 201 (301)
T ss_dssp --TTSSEEEEEEESCG---------------------GGSCGGGGSTTSSCEEEECC---CCCHHHHHHHHHHHHTT---
T ss_pred --CCCCEEEEEecCCc---------------------cccChHHhcCCccceEEecC---CcCHHHHHHHHHHHHcc---
Confidence 11568899999974 356788887 999999999 88999999988777632
Q ss_pred HhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 417 RNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 417 ~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+. .-.++. +.|+...+ |.+|++|++++++
T Consensus 202 ----~~~-~~~~~~---~~la~~~~---g~sg~dl~~l~~~ 231 (301)
T 3cf0_A 202 ----SPV-AKDVDL---EFLAKMTN---GFSGADLTEICQR 231 (301)
T ss_dssp ----SCB-CSSCCH---HHHHHTCS---SCCHHHHHHHHHH
T ss_pred ----CCC-CccchH---HHHHHHcC---CCCHHHHHHHHHH
Confidence 222 223333 34554332 3255799999987
No 45
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.67 E-value=8.5e-16 Score=154.19 Aligned_cols=197 Identities=20% Similarity=0.256 Sum_probs=134.0
Q ss_pred CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
..++|++.+++.+...+...+. ...|+ ..|..+||+||||||||++|+++|+.+.. +++.++++++
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~ll~G~~GtGKT~la~~la~~~~~------~~~~v~~~~~ 87 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGI---EPPKGILLYGPPGTGKTLLAKAVATETNA------TFIRVVGSEL 87 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC---CCCSEEEEESSSSSSHHHHHHHHHHHTTC------EEEEEEGGGG
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC---CCCCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEehHHH
Confidence 4589999999999888865310 01122 12378999999999999999999999877 9999999887
Q ss_pred Cchhh--hhhHHhHHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633 281 TELES--IKHFFDSLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLI 347 (550)
Q Consensus 281 ~~~~~--~s~liG~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii 347 (550)
..... ....+..+.........+||||||++.+ ++..+..|+++++.. ..+.. -.+++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~~------~~~~~v 159 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM--DGFDA------RGDVKI 159 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH--HTTCS------SSSEEE
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh--hCCCC------CCCEEE
Confidence 54321 1111222233334444489999999987 667788888887643 10111 146789
Q ss_pred EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633 348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI 425 (550)
Q Consensus 348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~ 425 (550)
|+|||.. ..++|.++. |++.++.|. +++.++...|+...+.. .+. .
T Consensus 160 I~ttn~~---------------------~~l~~~l~~~~Rf~~~i~~~---~p~~~~r~~il~~~~~~-------~~~-~ 207 (285)
T 3h4m_A 160 IGATNRP---------------------DILDPAILRPGRFDRIIEVP---APDEKGRLEILKIHTRK-------MNL-A 207 (285)
T ss_dssp EEECSCG---------------------GGBCHHHHSTTSEEEEEECC---CCCHHHHHHHHHHHHTT-------SCB-C
T ss_pred EEeCCCc---------------------hhcCHHHcCCCcCCeEEEEC---CCCHHHHHHHHHHHHhc-------CCC-C
Confidence 9999963 356788887 999899999 99999999998876522 222 1
Q ss_pred ccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 426 VCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 426 l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
... ....|+.... |.++|.++.+++.
T Consensus 208 ~~~---~~~~l~~~~~---g~~~~~i~~l~~~ 233 (285)
T 3h4m_A 208 EDV---NLEEIAKMTE---GCVGAELKAICTE 233 (285)
T ss_dssp TTC---CHHHHHHHCT---TCCHHHHHHHHHH
T ss_pred CcC---CHHHHHHHcC---CCCHHHHHHHHHH
Confidence 122 2445554332 3366899998886
No 46
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=5e-16 Score=157.92 Aligned_cols=188 Identities=12% Similarity=0.159 Sum_probs=138.2
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
..++||+.+++.+...+... ++.+++|+||+|+|||++|+.+++.+.+.+ ...+++.+|++.......
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~-----------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~ 88 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG-----------NMPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGIDV 88 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC-----------CCCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCSHHH
T ss_pred HHHHCCHHHHHHHHHHHHcC-----------CCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCccccChHH
Confidence 46899999999998888754 333499999999999999999999974300 012577888776533222
Q ss_pred hhhHHhHHHHH---HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633 286 IKHFFDSLAAL---VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM 362 (550)
Q Consensus 286 ~s~liG~lt~a---l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~ 362 (550)
+..++..+... ....++.||+|||++.++++.++.|++++++. . .++++|++||..
T Consensus 89 i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~--~-----------~~~~~il~~~~~-------- 147 (323)
T 1sxj_B 89 VRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY--S-----------NSTRFAFACNQS-------- 147 (323)
T ss_dssp HHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT--T-----------TTEEEEEEESCG--------
T ss_pred HHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc--C-----------CCceEEEEeCCh--------
Confidence 22222211100 00223579999999999999999999999987 4 567788888752
Q ss_pred hhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcc
Q 036633 363 LTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAAR 442 (550)
Q Consensus 363 ~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~ 442 (550)
..+.|.+.+|+ .++.|. |++.+++..++...+.. .|+ .+++++++.|+..+.
T Consensus 148 -------------~~l~~~l~sr~-~~i~~~---~~~~~~~~~~l~~~~~~-------~~~---~~~~~~~~~l~~~~~- 199 (323)
T 1sxj_B 148 -------------NKIIEPLQSQC-AILRYS---KLSDEDVLKRLLQIIKL-------EDV---KYTNDGLEAIIFTAE- 199 (323)
T ss_dssp -------------GGSCHHHHTTS-EEEECC---CCCHHHHHHHHHHHHHH-------HTC---CBCHHHHHHHHHHHT-
T ss_pred -------------hhchhHHHhhc-eEEeec---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHcC-
Confidence 35678899999 599999 99999999998877743 344 689999999998542
Q ss_pred cCCCcccHHHHHHcc
Q 036633 443 KYGQNGEGLKRWMDQ 457 (550)
Q Consensus 443 ~~GaN~R~L~~~i~~ 457 (550)
| |.|.+.+.++.
T Consensus 200 --G-~~r~a~~~l~~ 211 (323)
T 1sxj_B 200 --G-DMRQAINNLQS 211 (323)
T ss_dssp --T-CHHHHHHHHHH
T ss_pred --C-CHHHHHHHHHH
Confidence 6 77877777765
No 47
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.66 E-value=1.3e-16 Score=159.46 Aligned_cols=199 Identities=19% Similarity=0.148 Sum_probs=128.2
Q ss_pred HhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC-cCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633 200 VQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS-RRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM 277 (550)
Q Consensus 200 l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~-~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~ 277 (550)
+...+...++|++.+++.+....... ...+.. ...+ .++||+||||||||++|+++|+.+.. +++.+++
T Consensus 27 l~~~~~~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~------~~~~i~~ 97 (272)
T 1d2n_A 27 YASYIMNGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF------PFIKICS 97 (272)
T ss_dssp STTTCTTCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC------SEEEEEC
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC------CEEEEeC
Confidence 34455677999999988887742111 111111 1234 89999999999999999999999866 8999998
Q ss_pred CCCCchhhhhhHHh---HHHHHHHhCCCCeEEecccccc----------CHHHHHHHHHhhhhccccccccCCeEeecCC
Q 036633 278 GNYTELESIKHFFD---SLAALVKKRPYSVVLFDKIEKA----------NSSILNLLLKILKTDFNRKATRGIAAFDLTN 344 (550)
Q Consensus 278 s~~~~~~~~s~liG---~lt~al~~~p~~VlllDEIeka----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~ 344 (550)
++...........+ .+.+.....+.+|||||||+.+ ...+++.|+..++.. . . .-.+
T Consensus 98 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~--~---~-----~~~~ 167 (272)
T 1d2n_A 98 PDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKA--P---P-----QGRK 167 (272)
T ss_dssp GGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCC--C---S-----TTCE
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCc--c---C-----CCCC
Confidence 75322111111122 2222233455689999999987 556667777666532 1 0 1135
Q ss_pred eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCCh-hhhhhccceeEecCCCCCCH-HHHHHHHHHHHHHHHHHhccCC
Q 036633 345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKP-SLLKLLDKLVVIDLAVPLLD-TTRLLLREWACEETKRRNNDSK 422 (550)
Q Consensus 345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p-~ll~Rid~ii~f~~~~pL~~-e~i~~I~~~~l~~~~~~l~~~~ 422 (550)
++||+|||.... +.+ .+.+|++..|.|+ |++. +++..++... .
T Consensus 168 ~~ii~ttn~~~~---------------------l~~~~l~~rf~~~i~~p---~l~~r~~i~~i~~~~----------~- 212 (272)
T 1d2n_A 168 LLIIGTTSRKDV---------------------LQEMEMLNAFSTTIHVP---NIATGEQLLEALELL----------G- 212 (272)
T ss_dssp EEEEEEESCHHH---------------------HHHTTCTTTSSEEEECC---CEEEHHHHHHHHHHH----------T-
T ss_pred EEEEEecCChhh---------------------cchhhhhcccceEEcCC---CccHHHHHHHHHHhc----------C-
Confidence 678999986421 112 4678887888888 8887 6766665431 1
Q ss_pred CccccCCHHHHHHHHhcC--cccCCCcccHHHHHHcc
Q 036633 423 AVIVCPSTSALVHIASNA--ARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 423 ~~~l~~~~~a~~~L~~~~--~~~~GaN~R~L~~~i~~ 457 (550)
.++++++..|+... |+..| |+|.+.++++.
T Consensus 213 ----~~~~~~~~~l~~~~~g~~~~g-~ir~l~~~l~~ 244 (272)
T 1d2n_A 213 ----NFKDKERTTIAQQVKGKKVWI-GIKKLLMLIEM 244 (272)
T ss_dssp ----CSCHHHHHHHHHHHTTSEEEE-CHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHhcCCCccc-cHHHHHHHHHH
Confidence 35788888888743 33345 77988888886
No 48
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.66 E-value=1.2e-15 Score=158.66 Aligned_cols=186 Identities=20% Similarity=0.224 Sum_probs=135.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------ 267 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------ 267 (550)
..++||+++++.+..++... + .|..++|+||+|||||++|+++++.+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~---~-------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG---R-------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT---C-------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTS
T ss_pred hhccCcHHHHHHHHHHHHhC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcc
Confidence 45999999999999888754 1 2368899999999999999999999865110
Q ss_pred CCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633 268 NDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 268 ~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
....++.++.+....... +..+.+.+... .+.||+|||++.++++.++.|++.+++. . .
T Consensus 86 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~--~-----------~ 148 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKVED----TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP--P-----------E 148 (373)
T ss_dssp CCSSCEEEETTCSCCSSC----HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC--C-----------S
T ss_pred CCCceEEecccccCCHHH----HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC--C-----------C
Confidence 000234444332111111 11333333332 2469999999999999999999999876 4 4
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA 423 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~ 423 (550)
++++|++||.. ..+.+.+.+|+ .++.|. |++.+++..++...+.. .|+
T Consensus 149 ~~~~Il~~~~~---------------------~~l~~~l~sr~-~~i~~~---~l~~~~~~~~l~~~~~~-------~~~ 196 (373)
T 1jr3_A 149 HVKFLLATTDP---------------------QKLPVTILSRC-LQFHLK---ALDVEQIRHQLEHILNE-------EHI 196 (373)
T ss_dssp SEEEEEEESCG---------------------GGSCHHHHTTS-EEEECC---CCCHHHHHHHHHHHHHH-------HTC
T ss_pred ceEEEEEeCCh---------------------HhCcHHHHhhe-eEeeCC---CCCHHHHHHHHHHHHHH-------cCC
Confidence 67788888742 35678899999 799999 99999999998887753 344
Q ss_pred ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+++++++.|+..+- | |.|.+.+.+++
T Consensus 197 ---~~~~~a~~~l~~~~~---G-~~r~~~~~l~~ 223 (373)
T 1jr3_A 197 ---AHEPRALQLLARAAE---G-SLRDALSLTDQ 223 (373)
T ss_dssp ---CBCHHHHHHHHHHSS---S-CHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHCC---C-CHHHHHHHHHH
Confidence 789999999998642 6 77888887764
No 49
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=1.4e-15 Score=157.00 Aligned_cols=186 Identities=17% Similarity=0.279 Sum_probs=135.8
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCC--CceeEEecCCCCch
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDND--NHLIHFDMGNYTEL 283 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~--~~li~id~s~~~~~ 283 (550)
..++||+++++.+...+... +..+++|+||||||||++|+++|+.+++ .. ..++.+|.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g-----------~~~~~ll~Gp~G~GKTtla~~la~~l~~---~~~~~~~~~~~~~~~~~~ 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG-----------KLPHLLFYGPPGTGKTSTIVALAREIYG---KNYSNMVLELNASDDRGI 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-----------CCCCEEEECSSSSSHHHHHHHHHHHHHT---TSHHHHEEEECTTSCCSH
T ss_pred HHhcCcHHHHHHHHHHHhcC-----------CCceEEEECCCCCCHHHHHHHHHHHHcC---CCccceEEEEcCcccccH
Confidence 45889999999988888755 3335999999999999999999999876 22 13566776654332
Q ss_pred hhhhhHHhHHHHHH--HhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633 284 ESIKHFFDSLAALV--KKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV 361 (550)
Q Consensus 284 ~~~s~liG~lt~al--~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~ 361 (550)
..+...++.+.+.. ....+.|+++||++.++.+.++.|++++++. . .++.+|+++|..
T Consensus 91 ~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~--~-----------~~~~~il~~n~~------- 150 (340)
T 1sxj_C 91 DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY--T-----------KNTRFCVLANYA------- 150 (340)
T ss_dssp HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT--T-----------TTEEEEEEESCG-------
T ss_pred HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC--C-----------CCeEEEEEecCc-------
Confidence 22222333222110 0123579999999999999999999999987 5 567788888853
Q ss_pred hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc
Q 036633 362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA 441 (550)
Q Consensus 362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~ 441 (550)
..+.|.+.+|| .++.|. |++.+++..++...+. ..++ .+++++.++++..+-
T Consensus 151 --------------~~i~~~i~sR~-~~~~~~---~l~~~~~~~~l~~~~~-------~~~~---~i~~~~~~~i~~~s~ 202 (340)
T 1sxj_C 151 --------------HKLTPALLSQC-TRFRFQ---PLPQEAIERRIANVLV-------HEKL---KLSPNAEKALIELSN 202 (340)
T ss_dssp --------------GGSCHHHHTTS-EEEECC---CCCHHHHHHHHHHHHH-------TTTC---CBCHHHHHHHHHHHT
T ss_pred --------------cccchhHHhhc-eeEecc---CCCHHHHHHHHHHHHH-------HcCC---CCCHHHHHHHHHHcC
Confidence 35678899999 589999 9999999888877663 2444 789999999987542
Q ss_pred ccCCCcccHHHHHHcc
Q 036633 442 RKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 442 ~~~GaN~R~L~~~i~~ 457 (550)
| +.|.+.+.++.
T Consensus 203 ---G-~~r~~~~~l~~ 214 (340)
T 1sxj_C 203 ---G-DMRRVLNVLQS 214 (340)
T ss_dssp ---T-CHHHHHHHTTT
T ss_pred ---C-CHHHHHHHHHH
Confidence 5 56766666654
No 50
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.65 E-value=4e-17 Score=147.66 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=100.8
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~ 285 (550)
-.++|++.++..+...+... . ..+.+++|+||||||||++|++++..+ . +++.+||+.+.+..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~---~------~~~~~vll~G~~GtGKt~lA~~i~~~~-----~--~~~~~~~~~~~~~~- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAA---A------KRTSPVFLTGEAGSPFETVARYFHKNG-----T--PWVSPARVEYLIDM- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHH---H------TCSSCEEEEEETTCCHHHHHGGGCCTT-----S--CEECCSSTTHHHHC-
T ss_pred cCceeCCHHHHHHHHHHHHH---h------CCCCcEEEECCCCccHHHHHHHHHHhC-----C--CeEEechhhCChHh-
Confidence 35899999999999998865 1 123579999999999999999999754 2 89999998864322
Q ss_pred hhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhh
Q 036633 286 IKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTA 365 (550)
Q Consensus 286 ~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~ 365 (550)
..| .+....+++||||||+.++++.|..|+++++++ . -.++.+|+|||.+.... .
T Consensus 67 ---~~~----~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~--~----------~~~~~iI~~tn~~~~~~-~----- 121 (143)
T 3co5_A 67 ---PME----LLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKA--E----------RCRVRVIASCSYAAGSD-G----- 121 (143)
T ss_dssp ---HHH----HHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHH--T----------TTTCEEEEEEEECTTTC-------
T ss_pred ---hhh----HHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhC--C----------CCCEEEEEecCCCHHHH-H-----
Confidence 222 233345689999999999999999999999987 3 13466899999764332 1
Q ss_pred hHhhHHHHhccCCChhhhhhccceeEecCCCCCC
Q 036633 366 TYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL 399 (550)
Q Consensus 366 ~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~ 399 (550)
.. |+++|++|+.. +.+. .|||.
T Consensus 122 ---------~~-~~~~L~~rl~~-~~i~-lPpLr 143 (143)
T 3co5_A 122 ---------IS-CEEKLAGLFSE-SVVR-IPPLS 143 (143)
T ss_dssp ----------C-HHHHHHHHSSS-EEEE-ECCCC
T ss_pred ---------hC-ccHHHHHHhcC-cEEe-CCCCC
Confidence 24 88999999853 3333 22763
No 51
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.63 E-value=4.6e-15 Score=146.85 Aligned_cols=195 Identities=19% Similarity=0.226 Sum_probs=127.4
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCC--cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSS--RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL 283 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~--~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~ 283 (550)
+.++|++.+++.+...+..... ..-+.. ...|..++|+||||||||++|+++|..+.. +++.++++.+.+.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~------~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLRE-PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV------PFFTISGSDFVEM 84 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHC-GGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC------CEEEECSCSSTTS
T ss_pred HHhcCcHHHHHHHHHHHHHHhC-HHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC------CEEEEeHHHHHHH
Confidence 4689999999888776543200 000100 112357999999999999999999999876 8999999887543
Q ss_pred hh--hhhHHhHHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633 284 ES--IKHFFDSLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLI 347 (550)
Q Consensus 284 ~~--~s~liG~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii 347 (550)
.. ....++.+.+.......+++|||||+.+.+ ..++.++..++.- . .-.++++
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~---------~~~~~~v 153 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF--E---------GNEGIIV 153 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC--C---------SSSCEEE
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc--c---------cCCCEEE
Confidence 21 011122222233334447999999986643 4566677766532 1 1145789
Q ss_pred EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633 348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI 425 (550)
Q Consensus 348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~ 425 (550)
|+|||.. ..++|.++. |++..+.|. +++.++...|+..++.+ .
T Consensus 154 I~~tn~~---------------------~~l~~~l~r~~rf~~~i~i~---~P~~~~r~~il~~~~~~-------~---- 198 (257)
T 1lv7_A 154 IAATNRP---------------------DVLDPALLRPGRFDRQVVVG---LPDVRGREQILKVHMRR-------V---- 198 (257)
T ss_dssp EEEESCT---------------------TTSCGGGGSTTSSCEEEECC---CCCHHHHHHHHHHHHTT-------S----
T ss_pred EEeeCCc---------------------hhCCHHHcCCCcCCeEEEeC---CCCHHHHHHHHHHHHhc-------C----
Confidence 9999974 346677775 999899998 77888888888766532 2
Q ss_pred ccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 426 VCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 426 l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+++++ ...++. .++ |.|+|.|+++++.
T Consensus 199 -~l~~~~~~~~la~-~~~--G~~~~dl~~l~~~ 227 (257)
T 1lv7_A 199 -PLAPDIDAAIIAR-GTP--GFSGADLANLVNE 227 (257)
T ss_dssp -CBCTTCCHHHHHH-TCT--TCCHHHHHHHHHH
T ss_pred -CCCccccHHHHHH-HcC--CCCHHHHHHHHHH
Confidence 222333 445554 333 5577999999996
No 52
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.63 E-value=1.5e-15 Score=164.31 Aligned_cols=193 Identities=18% Similarity=0.263 Sum_probs=136.1
Q ss_pred CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
..++|++.+++.+...+...+. ...|. ..|..+||+||||||||++|+++|..+.. +|+.+||+++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~---~~~~~vLL~GppGtGKT~lAraia~~~~~------~fv~vn~~~l 274 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGV---KPPRGILLYGPPGTGKTLIARAVANETGA------FFFLINGPEI 274 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCEEEEECSTTSSHHHHHHHHHHHCSS------EEEEEEHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC---CCCCcEEEECcCCCCHHHHHHHHHHHhCC------CEEEEEchHh
Confidence 4699999999999888865310 01111 12378999999999999999999999866 9999999876
Q ss_pred Cchh---hhhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633 281 TELE---SIKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTL 346 (550)
Q Consensus 281 ~~~~---~~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i 346 (550)
.... ....+.+.|..+....| +|||||||+.+. ..+++.|+..++.- . . -.+++
T Consensus 275 ~~~~~g~~~~~~~~~f~~A~~~~p-~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~--~-~--------~~~v~ 342 (489)
T 3hu3_A 275 MSKLAGESESNLRKAFEEAEKNAP-AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL--K-Q--------RAHVI 342 (489)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHTCS-EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHS--C-T--------TSCEE
T ss_pred hhhhcchhHHHHHHHHHHHHhcCC-cEEEecchhhhccccccccchHHHHHHHHHHHHhhcc--c-c--------CCceE
Confidence 5331 12223335555555555 899999996554 47899999999854 2 1 14678
Q ss_pred EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633 347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV 424 (550)
Q Consensus 347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~ 424 (550)
||+|||.. ..++|++.+ ||+..|.|. +++.++...|+..++. +.
T Consensus 343 vIaaTn~~---------------------~~Ld~al~r~gRf~~~i~i~---~P~~~eR~~IL~~~~~---------~~- 388 (489)
T 3hu3_A 343 VMAATNRP---------------------NSIDPALRRFGRFDREVDIG---IPDATGRLEILQIHTK---------NM- 388 (489)
T ss_dssp EEEEESCG---------------------GGBCGGGGSTTSSCEEEECC---CCCHHHHHHHHHHHTT---------TS-
T ss_pred EEEecCCc---------------------cccCHHHhCCCcCceEEEeC---CCCHHHHHHHHHHHHh---------cC-
Confidence 99999974 246778876 999899999 8899999999877652 12
Q ss_pred cccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+..+ ..+..++.... |.+++.|..+++.
T Consensus 389 ~l~~~-~~l~~la~~t~---g~s~~dL~~L~~~ 417 (489)
T 3hu3_A 389 KLADD-VDLEQVANETH---GHVGADLAALCSE 417 (489)
T ss_dssp CBCTT-CCHHHHHHTCT---TCCHHHHHHHHHH
T ss_pred CCcch-hhHHHHHHHcc---CCcHHHHHHHHHH
Confidence 22211 12455666433 3355889888886
No 53
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.62 E-value=6.4e-15 Score=150.93 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=119.8
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhh---HHhHHHHHHHhCCCCeEEeccccccC
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKH---FFDSLAALVKKRPYSVVLFDKIEKAN 314 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~---liG~lt~al~~~p~~VlllDEIeka~ 314 (550)
+.+++|+||||||||++|+++++.+.. ...+++.++++.+........ ..+.+.+.... .+|||||||+.++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK---RGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKS--VDLLLLDDVQFLS 111 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH---TTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHT--CSEEEEECGGGGT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcC--CCEEEEcCccccc
Confidence 378999999999999999999999865 455899999877632111100 01133333332 4799999999988
Q ss_pred H--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--cee
Q 036633 315 S--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLV 390 (550)
Q Consensus 315 ~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii 390 (550)
. ..++.|+.+++.- . + .+..+|+||+.....+ ..+.+.|++|++ .++
T Consensus 112 ~~~~~~~~l~~~l~~~--~---~-------~~~~iii~~~~~~~~l-----------------~~l~~~L~sR~~~~~~i 162 (324)
T 1l8q_A 112 GKERTQIEFFHIFNTL--Y---L-------LEKQIILASDRHPQKL-----------------DGVSDRLVSRFEGGILV 162 (324)
T ss_dssp TCHHHHHHHHHHHHHH--H---H-------TTCEEEEEESSCGGGC-----------------TTSCHHHHHHHHTSEEE
T ss_pred CChHHHHHHHHHHHHH--H---H-------CCCeEEEEecCChHHH-----------------HHhhhHhhhcccCceEE
Confidence 6 7788888887643 1 1 1223556665443211 357899999996 567
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 391 VIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 391 ~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.|. | +.+++..|+...+.. .++ .++++++++|+.++ | |+|.+.++++.
T Consensus 163 ~l~---~-~~~e~~~il~~~~~~-------~~~---~l~~~~l~~l~~~~----g-~~r~l~~~l~~ 210 (324)
T 1l8q_A 163 EIE---L-DNKTRFKIIKEKLKE-------FNL---ELRKEVIDYLLENT----K-NVREIEGKIKL 210 (324)
T ss_dssp ECC---C-CHHHHHHHHHHHHHH-------TTC---CCCHHHHHHHHHHC----S-SHHHHHHHHHH
T ss_pred EeC---C-CHHHHHHHHHHHHHh-------cCC---CCCHHHHHHHHHhC----C-CHHHHHHHHHH
Confidence 888 8 999999999887743 444 78999999999853 6 88999999987
No 54
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=9.6e-17 Score=177.77 Aligned_cols=208 Identities=12% Similarity=0.111 Sum_probs=127.8
Q ss_pred CccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhh-cCCCC-cCCC-eeEEE
Q 036633 167 LAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAK-KGLSS-RRQL-GLFLF 243 (550)
Q Consensus 167 ~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~-~gl~~-~~~p-~~lLf 243 (550)
..++++++.++...+. +.+.+..+...+...|+||++++..+..++... . ..+.+ ..++ .++||
T Consensus 266 ~~~t~~~~~~i~~~~~----------~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g---~~~~~~~~~~r~~~~vLL 332 (595)
T 3f9v_A 266 VIISEEDEKKIKDLAK----------DPWIRDRIISSIAPSIYGHWELKEALALALFGG---VPKVLEDTRIRGDIHILI 332 (595)
T ss_dssp CCCTTSTHHHHHTTSS----------TTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCC---CCEETTTTEECCSCCEEE
T ss_pred CCCCHHHHHHHHHHhh----------CcHHHHHHHHhhcchhcChHHHHHHHHHHHhCC---CcccccCCCcCCCcceEE
Confidence 3566677766654332 123356777889999999999887764444322 0 00011 1122 58999
Q ss_pred eccCCCcHHHHHHHHHHHhccCCCCCCceeE----EecCCCCchhhhhhHHh-------HHHHHHHhCCCCeEEeccccc
Q 036633 244 AGPNCSGKAELAKAIANELYDNNDNDNHLIH----FDMGNYTELESIKHFFD-------SLAALVKKRPYSVVLFDKIEK 312 (550)
Q Consensus 244 ~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~----id~s~~~~~~~~s~liG-------~lt~al~~~p~~VlllDEIek 312 (550)
+||||||||++|+++|+.+.+ .+.. .+++.+.........-| .+.. ..++|+|||||++
T Consensus 333 ~GppGtGKT~LAr~la~~~~r------~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~----A~~gil~IDEid~ 402 (595)
T 3f9v_A 333 IGDPGTAKSQMLQFISRVAPR------AVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVL----ADGGIAVIDEIDK 402 (595)
T ss_dssp EESSCCTHHHHHHSSSTTCSC------EECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHH----HSSSEECCTTTTC
T ss_pred ECCCchHHHHHHHHHHHhCCC------ceecCCCccccccccceeeeccccccccccCCeeEe----cCCCcEEeehhhh
Confidence 999999999999999998765 2222 12222221111111111 3332 2458999999999
Q ss_pred cCHHHHHHHHHhhhhccccccc--cCCeEeec-CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccce
Q 036633 313 ANSSILNLLLKILKTDFNRKAT--RGIAAFDL-TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKL 389 (550)
Q Consensus 313 a~~~v~~~Ll~~ld~g~~~~l~--d~g~~vd~-~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~i 389 (550)
+++++++.|+++|++| . ++ ..|....+ .++.||+|||........ ..+ +.. .-.++++|++|||.+
T Consensus 403 l~~~~q~~Ll~~le~~--~-i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~---~~~---~~~--ni~l~~aLl~RFDl~ 471 (595)
T 3f9v_A 403 MRDEDRVAIHEAMEQQ--T-VSIAKAGIVAKLNARAAVIAAGNPKFGRYIS---ERP---VSD--NINLPPTILSRFDLI 471 (595)
T ss_dssp CCSHHHHHHHHHHHSS--S-EEEESSSSEEEECCCCEEEEEECCTTCCSCT---TSC---SCT--TTCSCSSSGGGCSCC
T ss_pred CCHhHhhhhHHHHhCC--E-EEEecCCcEEEecCceEEEEEcCCcCCccCc---ccC---chh--ccCCCHHHHhhCeEE
Confidence 9999999999999999 5 54 22444333 568899999975210000 000 000 015789999999988
Q ss_pred eEecCCCCCCHHHHHHHHHHHH
Q 036633 390 VVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 390 i~f~~~~pL~~e~i~~I~~~~l 411 (550)
+.+. ++..++...|+.+.+
T Consensus 472 ~~~~---~~~~~e~~~i~~~il 490 (595)
T 3f9v_A 472 FILK---DQPGEQDRELANYIL 490 (595)
T ss_dssp EEEC---CTTHHHHHHHHHHHH
T ss_pred EEeC---CCCCHHHHHHHHHHH
Confidence 8887 666655555555444
No 55
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.61 E-value=9.2e-15 Score=157.12 Aligned_cols=192 Identities=25% Similarity=0.330 Sum_probs=130.0
Q ss_pred CcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
+.|+|+++++..+.+.+..... ...|+ .-|..++|+||||||||++|+++|..+.. +|+.++++++.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~---~~p~gvLL~GppGtGKT~Laraia~~~~~------~f~~is~~~~~ 86 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGA---RMPKGILLVGPPGTGKTLLARAVAGEANV------PFFHISGSDFV 86 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC---CCCSEEEEECCTTSSHHHHHHHHHHHHTC------CEEEEEGGGTT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCC---CCCCeEEEECCCCCCHHHHHHHHHHHcCC------CeeeCCHHHHH
Confidence 4599999999888877654200 01122 13456999999999999999999999877 99999999886
Q ss_pred chhh---hhhHHhHHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEeecCC
Q 036633 282 ELES---IKHFFDSLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFDLTN 344 (550)
Q Consensus 282 ~~~~---~s~liG~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~ 344 (550)
+... ..++.+.|..+....| +|||||||+.+.+ .+++.|+..++.- . . -.+
T Consensus 87 ~~~~g~~~~~~r~lf~~A~~~~p-~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~--~---~------~~~ 154 (476)
T 2ce7_A 87 ELFVGVGAARVRDLFAQAKAHAP-CIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF--D---S------KEG 154 (476)
T ss_dssp TCCTTHHHHHHHHHHHHHHHTCS-EEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS--C---G------GGT
T ss_pred HHHhcccHHHHHHHHHHHHhcCC-CEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc--C---C------CCC
Confidence 5321 1122224444444445 8999999998743 3677788777631 1 0 146
Q ss_pred eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633 345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK 422 (550)
Q Consensus 345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~ 422 (550)
++||+|||.. ..++|+++ +|||..|.|. +++.++...|+..++.. ..
T Consensus 155 viVIaaTn~~---------------------~~Ld~allR~gRFd~~i~i~---~Pd~~~R~~Il~~~~~~-------~~ 203 (476)
T 2ce7_A 155 IIVMAATNRP---------------------DILDPALLRPGRFDKKIVVD---PPDMLGRKKILEIHTRN-------KP 203 (476)
T ss_dssp EEEEEEESCG---------------------GGSCGGGGSTTSSCEEEECC---CCCHHHHHHHHHHHHTT-------SC
T ss_pred EEEEEecCCh---------------------hhhchhhcccCcceeEeecC---CCCHHHHHHHHHHHHHh-------CC
Confidence 7899999974 34667777 4999999999 88888888888766532 21
Q ss_pred CccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 423 AVIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 423 ~~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ ++++ ++.|+.. ++ |.++|+|.++++.
T Consensus 204 l-----~~~v~l~~la~~-t~--G~sgadL~~lv~~ 231 (476)
T 2ce7_A 204 L-----AEDVNLEIIAKR-TP--GFVGADLENLVNE 231 (476)
T ss_dssp B-----CTTCCHHHHHHT-CT--TCCHHHHHHHHHH
T ss_pred C-----cchhhHHHHHHh-cC--CCcHHHHHHHHHH
Confidence 1 2222 5556653 33 5334899998886
No 56
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.61 E-value=1.1e-15 Score=170.05 Aligned_cols=210 Identities=15% Similarity=0.153 Sum_probs=135.0
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC---
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT--- 281 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~--- 281 (550)
-..++||+.+++.+..++... .+++|+||||||||++|++||..+.. .....+.+++....
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g-------------~~vll~Gp~GtGKTtlar~ia~~l~~---~~~~~~~~~~~~~~~~~ 103 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK-------------RHVLLIGEPGTGKSMLGQAMAELLPT---ETLEDILVFPNPEDENM 103 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT-------------CCEEEECCTTSSHHHHHHHHHHTSCC---SSCEEEEEECCTTCTTS
T ss_pred cceEECchhhHhhccccccCC-------------CEEEEEeCCCCCHHHHHHHHhccCCc---ccCCeEEEeCCcccccC
Confidence 356899999999988888754 48999999999999999999998865 32222222222111
Q ss_pred -----------------------------------------------------------chhhhhhHHhHH---------
Q 036633 282 -----------------------------------------------------------ELESIKHFFDSL--------- 293 (550)
Q Consensus 282 -----------------------------------------------------------~~~~~s~liG~l--------- 293 (550)
.......++|.+
T Consensus 104 p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~ 183 (604)
T 3k1j_A 104 PRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGG 183 (604)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----
T ss_pred CcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCC
Confidence 011233344411
Q ss_pred ----------HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-C----------eEeecCCeEEEEeCC
Q 036633 294 ----------AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-I----------AAFDLTNTLIIMTSD 352 (550)
Q Consensus 294 ----------t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g----------~~vd~~~~iiI~TsN 352 (550)
...+.....+++||||++.+++.+|+.|+++|++| . ++.. + ...--.++.||+|||
T Consensus 184 ~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~--~-~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn 260 (604)
T 3k1j_A 184 LGTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEK--K-FPITGQSEMSSGAMVRTEPVPCDFVLVAAGN 260 (604)
T ss_dssp CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHS--E-ECCBCSCTTSGGGGCBCSCEECCCEEEEEEC
T ss_pred ccccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcC--c-EEecccccccccccCCCCccceeEEEEEecC
Confidence 11223345579999999999999999999999999 4 4322 1 111113456999999
Q ss_pred CChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc---ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 036633 353 LKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD---KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPS 429 (550)
Q Consensus 353 ~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid---~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~ 429 (550)
... ...|+|+|++||+ ..+.|. +... +....+..++..+.+.+...+. ...++
T Consensus 261 ~~~-------------------~~~l~~~l~~R~~v~~i~i~l~---~~~~-~~~~~~~~~l~~~~~~~~~~~~-~~~ls 316 (604)
T 3k1j_A 261 LDT-------------------VDKMHPALRSRIRGYGYEVYMR---TTMP-DTIENRRKLVQFVAQEVKRDGK-IPHFT 316 (604)
T ss_dssp HHH-------------------HHHSCHHHHHHHHHHSEEEECC---SEEE-CCHHHHHHHHHHHHHHHHHHCS-SCCBB
T ss_pred HHH-------------------HhhcCHHHHHHhhccceEeecc---cccc-CCHHHHHHHHHHHHHHHhhccC-cccCC
Confidence 521 1358999999996 356665 3322 2223333444444444433333 45889
Q ss_pred HHHHHHHHhcCcccCC------CcccHHHHHHcc
Q 036633 430 TSALVHIASNAARKYG------QNGEGLKRWMDQ 457 (550)
Q Consensus 430 ~~a~~~L~~~~~~~~G------aN~R~L~~~i~~ 457 (550)
++++..|..+++...| .|.|.+.++++.
T Consensus 317 ~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~ 350 (604)
T 3k1j_A 317 KEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRA 350 (604)
T ss_dssp HHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccccccCHHHHHHHHHH
Confidence 9999999986652223 256888888875
No 57
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=3.9e-15 Score=153.99 Aligned_cols=190 Identities=15% Similarity=0.184 Sum_probs=128.4
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCC-----------------
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDN----------------- 268 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~----------------- 268 (550)
..++||+++++.+..++... .+..+++|+||+|+|||+++++++..+++....
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~----------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~ 83 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP----------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL 83 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT----------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred HHhcCCHHHHHHHHHHHhhC----------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccc
Confidence 45889999988776665211 133349999999999999999999976541100
Q ss_pred ------CCceeEEecCCCCchh--hhhhHHhHHHHH--HH--------hCCCCeEEeccccccCHHHHHHHHHhhhhccc
Q 036633 269 ------DNHLIHFDMGNYTELE--SIKHFFDSLAAL--VK--------KRPYSVVLFDKIEKANSSILNLLLKILKTDFN 330 (550)
Q Consensus 269 ------~~~li~id~s~~~~~~--~~s~liG~lt~a--l~--------~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~ 330 (550)
..+++.++.+...... .+..++..+... +. ..++.|++|||++.+++..++.|++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~-- 161 (354)
T 1sxj_E 84 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY-- 161 (354)
T ss_dssp --CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS--
T ss_pred eeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh--
Confidence 0123344433321111 111111111000 00 123469999999999999999999999876
Q ss_pred cccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHH
Q 036633 331 RKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWA 410 (550)
Q Consensus 331 ~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~ 410 (550)
. .++.||++||.. ..+.|.+.+|| .++.|. |++.+++..++...
T Consensus 162 ~-----------~~~~~Il~t~~~---------------------~~l~~~l~sR~-~~~~~~---~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 162 S-----------KNIRLIMVCDSM---------------------SPIIAPIKSQC-LLIRCP---APSDSEISTILSDV 205 (354)
T ss_dssp T-----------TTEEEEEEESCS---------------------CSSCHHHHTTS-EEEECC---CCCHHHHHHHHHHH
T ss_pred c-----------CCCEEEEEeCCH---------------------HHHHHHHHhhc-eEEecC---CcCHHHHHHHHHHH
Confidence 4 456788888753 35678899999 899999 99999999988887
Q ss_pred HHHHHHHhccCCCccccCC-HHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 411 CEETKRRNNDSKAVIVCPS-TSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 411 l~~~~~~l~~~~~~~l~~~-~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+.. .|+ .++ +++++.|+..+- | |.|.+.+.++.
T Consensus 206 ~~~-------~~~---~~~~~~~l~~i~~~~~---G-~~r~a~~~l~~ 239 (354)
T 1sxj_E 206 VTN-------ERI---QLETKDILKRIAQASN---G-NLRVSLLMLES 239 (354)
T ss_dssp HHH-------HTC---EECCSHHHHHHHHHHT---T-CHHHHHHHHTH
T ss_pred HHH-------cCC---CCCcHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence 743 344 678 899999997542 6 77888888875
No 58
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.59 E-value=2e-14 Score=154.54 Aligned_cols=115 Identities=11% Similarity=0.086 Sum_probs=81.5
Q ss_pred CeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhh
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSL 382 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~l 382 (550)
+|++|||++.++++.++.|++.+++. . .+ +||++||.+...+.. +. .-.-...++|.+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~--~-----------~~-~~il~tn~~~~~i~~---~~-----~~~~~~~l~~~i 354 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESS--I-----------AP-IVIFASNRGNCVIRG---TE-----DITSPHGIPLDL 354 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTST--T-----------CC-EEEEEECCSEEECBT---TS-----SCEEETTCCHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhcc--C-----------CC-EEEEecCCccccccc---cc-----cccccccCChhH
Confidence 59999999999999999999999988 5 34 466666654211100 00 000013568899
Q ss_pred hhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcC-cccCCCcccHHHHHHcc
Q 036633 383 LKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNA-ARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 383 l~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~-~~~~GaN~R~L~~~i~~ 457 (550)
++|| .++.|. |++.+++..++...+.. .++ .++++++.+|+..+ . | +.|..-.+++.
T Consensus 355 ~sR~-~~~~~~---~~~~~e~~~iL~~~~~~-------~~~---~~~~~~~~~i~~~a~~---g-~~r~a~~ll~~ 412 (456)
T 2c9o_A 355 LDRV-MIIRTM---LYTPQEMKQIIKIRAQT-------EGI---NISEEALNHLGEIGTK---T-TLRYSVQLLTP 412 (456)
T ss_dssp HTTE-EEEECC---CCCHHHHHHHHHHHHHH-------HTC---CBCHHHHHHHHHHHHH---S-CHHHHHHTHHH
T ss_pred Hhhc-ceeeCC---CCCHHHHHHHHHHHHHH-------hCC---CCCHHHHHHHHHHccC---C-CHHHHHHHHHH
Confidence 9999 678999 99999999999887742 233 68999999999865 3 4 44655555553
No 59
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.59 E-value=1.2e-14 Score=151.12 Aligned_cols=209 Identities=13% Similarity=0.096 Sum_probs=143.7
Q ss_pred hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC---CCCCceeEEecCCC
Q 036633 204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN---DNDNHLIHFDMGNY 280 (550)
Q Consensus 204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~---~~~~~li~id~s~~ 280 (550)
....++|++..+..+...+... . ....|.+++|+||||||||++|+.+++.+.... ....+++.+||...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~---~----~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPA---L----RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGG---T----SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHH---H----cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 3478999999999998888654 1 122447999999999999999999999883200 01348899999876
Q ss_pred Cchhhh-------------------hhHHhHHHHHHHhCC-CCeEEeccccccCHH--HHHHHHHhhhhccccccccCCe
Q 036633 281 TELESI-------------------KHFFDSLAALVKKRP-YSVVLFDKIEKANSS--ILNLLLKILKTDFNRKATRGIA 338 (550)
Q Consensus 281 ~~~~~~-------------------s~liG~lt~al~~~p-~~VlllDEIeka~~~--v~~~Ll~~ld~g~~~~l~d~g~ 338 (550)
...... ..++..+...+.... ..||+|||++.+.+. .++.|+.+++.. ....
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~--~~~~---- 163 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRIN--QELG---- 163 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGG--GCC-----
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhch--hhcC----
Confidence 543321 111223333333322 359999999999876 778888777643 2010
Q ss_pred EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc-eeEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 036633 339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK-LVVIDLAVPLLDTTRLLLREWACEETKRR 417 (550)
Q Consensus 339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~-ii~f~~~~pL~~e~i~~I~~~~l~~~~~~ 417 (550)
. -.++++|+|||... +...+.+.+.+|+.. .+.|. |++.+++..++...+.. .
T Consensus 164 -~-~~~~~~I~~t~~~~------------------~~~~l~~~l~~r~~~~~i~l~---~l~~~~~~~il~~~~~~---~ 217 (387)
T 2v1u_A 164 -D-RVWVSLVGITNSLG------------------FVENLEPRVKSSLGEVELVFP---PYTAPQLRDILETRAEE---A 217 (387)
T ss_dssp ------CEEEEECSCST------------------TSSSSCHHHHTTTTSEECCBC---CCCHHHHHHHHHHHHHH---H
T ss_pred -C-CceEEEEEEECCCc------------------hHhhhCHHHHhcCCCeEEeeC---CCCHHHHHHHHHHHHHh---h
Confidence 0 13456888888641 124678899999975 88999 99999999999988743 1
Q ss_pred hccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 418 NNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 418 l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ . ...+++++++.++..++...| |.|.+.++++.
T Consensus 218 ~--~---~~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~ 251 (387)
T 2v1u_A 218 F--N---PGVLDPDVVPLCAALAAREHG-DARRALDLLRV 251 (387)
T ss_dssp B--C---TTTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHH
T ss_pred c--c---CCCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHH
Confidence 1 2 236788999999986653347 88988888876
No 60
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.58 E-value=1.4e-14 Score=140.44 Aligned_cols=180 Identities=10% Similarity=0.190 Sum_probs=128.0
Q ss_pred cHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHH
Q 036633 211 QNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFF 290 (550)
Q Consensus 211 Q~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~li 290 (550)
+..++..+...+... .+.+++|+||||||||++|+++++.+.. ...+++.++++++..... ..+
T Consensus 36 ~~~~~~~l~~~~~~~-----------~~~~~ll~G~~G~GKT~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~--~~~ 99 (242)
T 3bos_A 36 NDELIGALKSAASGD-----------GVQAIYLWGPVKSGRTHLIHAACARANE---LERRSFYIPLGIHASIST--ALL 99 (242)
T ss_dssp CHHHHHHHHHHHHTC-----------SCSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEGGGGGGSCG--GGG
T ss_pred CHHHHHHHHHHHhCC-----------CCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHHHH--HHH
Confidence 356666665555432 3368999999999999999999999876 556888999887653211 111
Q ss_pred hHHHHHHHhCCCCeEEeccccccCHHH--HHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHh
Q 036633 291 DSLAALVKKRPYSVVLFDKIEKANSSI--LNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYG 368 (550)
Q Consensus 291 G~lt~al~~~p~~VlllDEIeka~~~v--~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~ 368 (550)
.. + ....||+|||++.++... ++.|+.+++.- . .. ....+|+|||......
T Consensus 100 ~~----~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~--~--~~-------~~~~ii~~~~~~~~~~---------- 152 (242)
T 3bos_A 100 EG----L--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRV--A--EQ-------KRGSLIVSASASPMEA---------- 152 (242)
T ss_dssp TT----G--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHH--H--HH-------CSCEEEEEESSCTTTT----------
T ss_pred Hh----c--cCCCEEEEeccccccCCHHHHHHHHHHHHHH--H--Hc-------CCCeEEEEcCCCHHHH----------
Confidence 11 1 224799999999997755 88888887654 2 00 1123666666543111
Q ss_pred hHHHHhccCCChhhhhhcc--ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCC
Q 036633 369 RVNEVTGSLFKPSLLKLLD--KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQ 446 (550)
Q Consensus 369 ~~~~~l~~~f~p~ll~Rid--~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~Ga 446 (550)
..+.+.+.+|+. .++.|. |++.+++..++...+.. .++ .++++++++|+..+ + |
T Consensus 153 -------~~~~~~l~~r~~~~~~i~l~---~~~~~~~~~~l~~~~~~-------~~~---~~~~~~~~~l~~~~-~--g- 208 (242)
T 3bos_A 153 -------GFVLPDLVSRMHWGLTYQLQ---PMMDDEKLAALQRRAAM-------RGL---QLPEDVGRFLLNRM-A--R- 208 (242)
T ss_dssp -------TCCCHHHHHHHHHSEEEECC---CCCGGGHHHHHHHHHHH-------TTC---CCCHHHHHHHHHHT-T--T-
T ss_pred -------HHhhhhhhhHhhcCceEEeC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHc-c--C-
Confidence 234588999996 789999 99999999999887743 444 78999999999854 2 6
Q ss_pred cccHHHHHHcc
Q 036633 447 NGEGLKRWMDQ 457 (550)
Q Consensus 447 N~R~L~~~i~~ 457 (550)
|+|.+.+.++.
T Consensus 209 ~~r~l~~~l~~ 219 (242)
T 3bos_A 209 DLRTLFDVLDR 219 (242)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88999999996
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=4.9e-14 Score=146.99 Aligned_cols=204 Identities=13% Similarity=0.120 Sum_probs=145.8
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCe--eEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEEecCCCC
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLG--LFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHFDMGNYT 281 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~--~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~id~s~~~ 281 (550)
...++|++..++.+...+... ..| ..|. +++|+||||||||++++.+++.+.. . ..+++.+||+...
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~---~~~----~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~---~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNW---LRN----PGHHYPRATLLGRPGTGKTVTLRKLWELYKD---KTTARFVYINGFIYR 85 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHH---HHS----TTSSCCEEEEECCTTSSHHHHHHHHHHHHTT---SCCCEEEEEETTTCC
T ss_pred CCCCCChHHHHHHHHHHHHHH---HcC----CCCCCCeEEEECCCCCCHHHHHHHHHHHHhh---hcCeeEEEEeCccCC
Confidence 367999999999999998875 322 1233 8999999999999999999999865 4 3578999988765
Q ss_pred chhhh-h------------------hHHhHHHHHHHhC-CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEee
Q 036633 282 ELESI-K------------------HFFDSLAALVKKR-PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341 (550)
Q Consensus 282 ~~~~~-s------------------~liG~lt~al~~~-p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd 341 (550)
..... . .++..+...+... ...||+|||++.++++.+..|+++++.. . - . .
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~--~-~-~-----~ 156 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEA--D-K-L-----G 156 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCH--H-H-H-----S
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhC--C-C-C-----C
Confidence 43211 1 1111333334332 2469999999999999999999999754 2 0 0 0
Q ss_pred cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc-eeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK-LVVIDLAVPLLDTTRLLLREWACEETKRRNND 420 (550)
Q Consensus 342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~-ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~ 420 (550)
-.++.||++||... . ...+.+.+.+|+.. .+.|. ||+.+++..++...+...
T Consensus 157 ~~~~~iI~~~~~~~--~----------------~~~l~~~~~~r~~~~~i~~~---pl~~~~~~~~l~~~~~~~------ 209 (389)
T 1fnn_A 157 AFRIALVIVGHNDA--V----------------LNNLDPSTRGIMGKYVIRFS---PYTKDQIFDILLDRAKAG------ 209 (389)
T ss_dssp SCCEEEEEEESSTH--H----------------HHTSCHHHHHHHTTCEEECC---CCBHHHHHHHHHHHHHHH------
T ss_pred cCCEEEEEEECCch--H----------------HHHhCHHhhhcCCCceEEeC---CCCHHHHHHHHHHHHHhh------
Confidence 02456788877532 1 13578889999965 79999 999999999988877431
Q ss_pred CCCccccCCHHHHHHHHhcCccc------CCCcccHHHHHHcc
Q 036633 421 SKAVIVCPSTSALVHIASNAARK------YGQNGEGLKRWMDQ 457 (550)
Q Consensus 421 ~~~~~l~~~~~a~~~L~~~~~~~------~GaN~R~L~~~i~~ 457 (550)
+. ...+++++++.++..++.. .| |.|.+.++++.
T Consensus 210 -~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~ 249 (389)
T 1fnn_A 210 -LA-EGSYSEDILQMIADITGAQTPLDTNRG-DARLAIDILYR 249 (389)
T ss_dssp -BC-TTSSCHHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHH
T ss_pred -cC-CCCCCHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHH
Confidence 11 2268999999999876522 36 77888888875
No 62
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.58 E-value=2.3e-14 Score=147.85 Aligned_cols=181 Identities=12% Similarity=0.076 Sum_probs=127.3
Q ss_pred cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------CCC
Q 036633 209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------NDN 270 (550)
Q Consensus 209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------~~~ 270 (550)
-.|+++++.+..++... + -|..+||+||+|+|||++|+.+|+.+..... ...
T Consensus 5 pw~~~~~~~l~~~i~~~---~-------~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAG---R-------GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GGGHHHHHHHHHHHHTT---C-------CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred CchHHHHHHHHHHHHcC---C-------cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45788888888888765 1 2368999999999999999999999976210 012
Q ss_pred ceeEEecCCCCchhhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633 271 HLIHFDMGNYTELESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTL 346 (550)
Q Consensus 271 ~li~id~s~~~~~~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i 346 (550)
.+..++..+-.....+.. +..+.+.+...| +.|++|||+|+++++.++.|++.+++. . .+++
T Consensus 75 d~~~~~~~~~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep--~-----------~~~~ 140 (334)
T 1a5t_A 75 DYYTLAPEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP--P-----------AETW 140 (334)
T ss_dssp TEEEECCCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC--C-----------TTEE
T ss_pred CEEEEeccccCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC--C-----------CCeE
Confidence 344554421000011111 113344444333 579999999999999999999999987 5 6788
Q ss_pred EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633 347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV 426 (550)
Q Consensus 347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l 426 (550)
+|++||.. ..+.|.+.+|| .++.|. |++.+++..++...+
T Consensus 141 ~Il~t~~~---------------------~~l~~ti~SRc-~~~~~~---~~~~~~~~~~L~~~~--------------- 180 (334)
T 1a5t_A 141 FFLATREP---------------------ERLLATLRSRC-RLHYLA---PPPEQYAVTWLSREV--------------- 180 (334)
T ss_dssp EEEEESCG---------------------GGSCHHHHTTS-EEEECC---CCCHHHHHHHHHHHC---------------
T ss_pred EEEEeCCh---------------------HhCcHHHhhcc-eeeeCC---CCCHHHHHHHHHHhc---------------
Confidence 88888752 35778999999 799999 999999887766432
Q ss_pred cCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 427 CPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 427 ~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+++++++.++..+. | +.|...+.++.
T Consensus 181 ~~~~~~~~~l~~~s~---G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 181 TMSQDALLAALRLSA---G-SPGAALALFQG 207 (334)
T ss_dssp CCCHHHHHHHHHHTT---T-CHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHcC---C-CHHHHHHHhcc
Confidence 458888888887543 4 55666666654
No 63
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.58 E-value=4.8e-16 Score=154.69 Aligned_cols=194 Identities=22% Similarity=0.288 Sum_probs=124.6
Q ss_pred CcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
..++|++.+++.+...+..... ...|. ..|..++|+||||||||++|+++|+.+.. +++.++++.+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~vll~G~~GtGKT~la~~la~~~~~------~~~~v~~~~~~ 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGA---KIPKGVLLVGPPGTGKTLLAKAVAGEAHV------PFFSMGGSSFI 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSC---CCCSCCCCBCSSCSSHHHHHHHHHHHHTC------CCCCCCSCTTT
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCC---CCCceEEEECCCCCcHHHHHHHHHHHhCC------CEEEechHHHH
Confidence 4689999999888877653200 00122 12356899999999999999999999876 89999998775
Q ss_pred chhh---hhhHHhHHHHHHHhCCCCeEEeccccccCHH---------------HHHHHHHhhhhccccccccCCeEeecC
Q 036633 282 ELES---IKHFFDSLAALVKKRPYSVVLFDKIEKANSS---------------ILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 282 ~~~~---~s~liG~lt~al~~~p~~VlllDEIeka~~~---------------v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
.... ...+-+.+..+.. ...+||||||++.+.+. +++.|+..++.- . ....
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~--------~~~~ 150 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKK-QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF--G--------SENA 150 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHH-SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS--S--------CSCS
T ss_pred HhhcchHHHHHHHHHHHHHh-cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc--c--------cCCC
Confidence 4211 0111113333333 34489999999998754 344455555422 1 0124
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS 421 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~ 421 (550)
+++||+|||.. ..++|+++. |++..+.|. +++.++...++...+.. .
T Consensus 151 ~v~vi~ttn~~---------------------~~ld~~l~r~~Rf~~~i~i~---~p~~~~r~~il~~~~~~-------~ 199 (268)
T 2r62_A 151 PVIVLAATNRP---------------------EILDPALMRPGRFDRQVLVD---KPDFNGRVEILKVHIKG-------V 199 (268)
T ss_dssp CCEEEECBSCC---------------------TTSCGGGGSSSSSCCCCBCC---CCCTTTHHHHHHHHTSS-------S
T ss_pred CEEEEEecCCc---------------------hhcCHhHcCCCCCCeEEEec---CcCHHHHHHHHHHHHhc-------C
Confidence 47899999974 356778887 998899999 88888888888766531 2
Q ss_pred CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+ . ++..++.|+.... |.++|.|+++++.
T Consensus 200 ~~---~-~~~~~~~la~~~~---g~~g~dl~~l~~~ 228 (268)
T 2r62_A 200 KL---A-NDVNLQEVAKLTA---GLAGADLANIINE 228 (268)
T ss_dssp CC---C-SSCCTTTTTSSSC---SSCHHHHHHHHHH
T ss_pred CC---C-CccCHHHHHHHcC---CCCHHHHHHHHHH
Confidence 11 1 1111334554322 4355889988886
No 64
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=1.3e-14 Score=151.37 Aligned_cols=201 Identities=17% Similarity=0.154 Sum_probs=138.5
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CC-CCceeEEecCC
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DN-DNHLIHFDMGN 279 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~-~~~li~id~s~ 279 (550)
...++|++..++.+...+... ..+ ..|.+++|+||||||||++|+.+++.+.... .. ..+++.+||+.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~---~~~----~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYF---VKN----EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHH---HTT----CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCCChHHHHHHHHHHHHHH---HcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 478999999999999988765 222 2347999999999999999999999883300 01 44889999887
Q ss_pred CC-chhh-----hhh---------------HHhHHHHHHHhCCCCeEEeccccccCHHH-HHH-HHHhhhhccccccccC
Q 036633 280 YT-ELES-----IKH---------------FFDSLAALVKKRPYSVVLFDKIEKANSSI-LNL-LLKILKTDFNRKATRG 336 (550)
Q Consensus 280 ~~-~~~~-----~s~---------------liG~lt~al~~~p~~VlllDEIeka~~~v-~~~-Ll~~ld~g~~~~l~d~ 336 (550)
.. .... ... ++..+.+.+...+. ||+|||++.+.+.. ++. +..+++..
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~~-------- 162 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRSD-------- 162 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTSHHHHHHHHTSS--------
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCCceeHHHHhcCC--------
Confidence 54 2221 111 12233333434443 99999999986542 444 44444311
Q ss_pred CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHH
Q 036633 337 IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKR 416 (550)
Q Consensus 337 g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~ 416 (550)
.++.||+|||... +...+.+.+.+|+...+.|. ||+.+++..++...+..
T Consensus 163 ------~~~~iI~~t~~~~------------------~~~~l~~~l~sr~~~~i~l~---~l~~~~~~~il~~~~~~--- 212 (384)
T 2qby_B 163 ------ANISVIMISNDIN------------------VRDYMEPRVLSSLGPSVIFK---PYDAEQLKFILSKYAEY--- 212 (384)
T ss_dssp ------SCEEEEEECSSTT------------------TTTTSCHHHHHTCCCEEEEC---CCCHHHHHHHHHHHHHH---
T ss_pred ------cceEEEEEECCCc------------------hHhhhCHHHHhcCCCeEEEC---CCCHHHHHHHHHHHHHh---
Confidence 3566888888531 12456888999987799999 99999999999987742
Q ss_pred HhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 417 RNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 417 ~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+ . ...+++++++.++..+....| |.|.+.++++.
T Consensus 213 ~~--~---~~~~~~~~~~~i~~~~~~~~G-~~r~a~~~l~~ 247 (384)
T 2qby_B 213 GL--I---KGTYDDEILSYIAAISAKEHG-DARKAVNLLFR 247 (384)
T ss_dssp TS--C---TTSCCSHHHHHHHHHHHTTCC-CHHHHHHHHHH
T ss_pred hc--c---cCCcCHHHHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 11 1 236889999999986553347 88877777775
No 65
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.56 E-value=8.9e-15 Score=149.30 Aligned_cols=236 Identities=14% Similarity=0.058 Sum_probs=145.5
Q ss_pred cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-C---CCceeEEecCCCCc
Q 036633 207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-N---DNHLIHFDMGNYTE 282 (550)
Q Consensus 207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-~---~~~li~id~s~~~~ 282 (550)
.+.|.+.-+..+...+... -. ..+|.+++|+||||||||.+++.+++.+..... . .-.++.+||..+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~---i~----~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDS---LM----SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HH----TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred ccCCHHHHHHHHHHHHHHH---hc----CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 3788889999998888876 21 235689999999999999999999999964100 0 12578899988765
Q ss_pred hhhhh-----hHHh----------HHHHHHH-----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633 283 LESIK-----HFFD----------SLAALVK-----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 283 ~~~~s-----~liG----------~lt~al~-----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
...+- .+.| .|...+. .....||+|||+|.+. -|+.|+.+++-. . . +-
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~--~-~-------~~ 161 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWI--S-S-------KN 161 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHH--H-C-------SS
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcc--c-c-------cC
Confidence 43321 1211 2222222 2334699999999998 678888887633 2 1 11
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc-ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhc--
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD-KLVVIDLAVPLLDTTRLLLREWACEETKRRNN-- 419 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid-~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~-- 419 (550)
++.+||+++|.-.-. ...+++.+.+|+. .+|.|. ||+.+++..|+...+..+...+-
T Consensus 162 s~~~vI~i~n~~d~~-----------------~~~L~~~v~SR~~~~~i~F~---pYt~~el~~Il~~Rl~~~~~~~f~~ 221 (318)
T 3te6_A 162 SKLSIICVGGHNVTI-----------------REQINIMPSLKAHFTEIKLN---KVDKNELQQMIITRLKSLLKPFHVK 221 (318)
T ss_dssp CCEEEEEECCSSCCC-----------------HHHHHTCHHHHTTEEEEECC---CCCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CcEEEEEEecCcccc-----------------hhhcchhhhccCCceEEEeC---CCCHHHHHHHHHHHHHhhhcccccc
Confidence 456788888852100 0122455778986 589999 99999999999999976432100
Q ss_pred ---c------------------CCC--ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc-hhhHHH--HHhhhhcCCC
Q 036633 420 ---D------------------SKA--VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ-RPSADH--VIDKFLRDAG 473 (550)
Q Consensus 420 ---~------------------~~~--~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~-~~la~~--~l~~~~~~~~ 473 (550)
+ .|+ ..+.++++++++++.......| ..|-.-.++++ .-+++. +-.... .++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k~~~-~~~ 299 (318)
T 3te6_A 222 VNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRKGGL-QKG 299 (318)
T ss_dssp ECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTE-ETT
T ss_pred ccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhccCC-CCC
Confidence 0 010 0346899999999985432224 33644444444 222221 111122 345
Q ss_pred ccccccchhh
Q 036633 474 YNHQSKEETE 483 (550)
Q Consensus 474 ~~~i~~~~~~ 483 (550)
..+|+.+..+
T Consensus 300 ~~~i~~~~~~ 309 (318)
T 3te6_A 300 KLVVSQEMVP 309 (318)
T ss_dssp EECCSEECCT
T ss_pred cEEeeHHHHH
Confidence 5666665443
No 66
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=2e-14 Score=146.40 Aligned_cols=147 Identities=12% Similarity=0.164 Sum_probs=110.8
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC-CCchhhhhh
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN-YTELESIKH 288 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~-~~~~~~~s~ 288 (550)
||+++++.+.+.+... ++.++||+||||+|||++|+++|+.+..+......++.++.+. ......
T Consensus 1 g~~~~~~~L~~~i~~~-----------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~--- 66 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD--- 66 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH---
T ss_pred ChHHHHHHHHHHHHCC-----------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH---
Confidence 8999999999998865 2469999999999999999999987432111244788888653 111111
Q ss_pred HHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhh
Q 036633 289 FFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLT 364 (550)
Q Consensus 289 liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~ 364 (550)
+..+.+.+...| +.|++|||+|.++.+.++.||+.+|+. . .+++||++||..
T Consensus 67 -ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep--~-----------~~t~fIl~t~~~---------- 122 (305)
T 2gno_A 67 -IRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEP--P-----------EYAVIVLNTRRW---------- 122 (305)
T ss_dssp -HHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSC--C-----------TTEEEEEEESCG----------
T ss_pred -HHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCC--C-----------CCeEEEEEECCh----------
Confidence 223445555555 469999999999999999999999988 5 678888888742
Q ss_pred hhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633 365 ATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 365 ~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l 411 (550)
..+.|.+.+| ++.|. |++.+++..++...+
T Consensus 123 -----------~kl~~tI~SR---~~~f~---~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 123 -----------HYLLPTIKSR---VFRVV---VNVPKEFRDLVKEKI 152 (305)
T ss_dssp -----------GGSCHHHHTT---SEEEE---CCCCHHHHHHHHHHH
T ss_pred -----------HhChHHHHce---eEeCC---CCCHHHHHHHHHHHh
Confidence 3677899999 89999 999999999888765
No 67
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.54 E-value=1.7e-14 Score=154.29 Aligned_cols=167 Identities=16% Similarity=0.228 Sum_probs=120.3
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh--------HHHHHHHhCCCCeEEecc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD--------SLAALVKKRPYSVVLFDK 309 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG--------~lt~al~~~p~~VlllDE 309 (550)
+.+++|+||||||||++|++++..+.... ...+++.++++.+.. .+++ .+....+ ....||||||
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~vL~IDE 202 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKFLN-----DLVDSMKEGKLNEFREKYR-KKVDILLIDD 202 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEHHHHHH-----HHHHHHHTTCHHHHHHHHT-TTCSEEEEEC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHH-----HHHHHHHcccHHHHHHHhc-CCCCEEEEeC
Confidence 56899999999999999999999884400 144788899877532 2222 2222222 1457999999
Q ss_pred ccccCH--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc
Q 036633 310 IEKANS--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD 387 (550)
Q Consensus 310 Ieka~~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid 387 (550)
++.+.. ..++.|+.+++.- . . .+..||+||+.....+ ..+.+.+++|+.
T Consensus 203 i~~l~~~~~~q~~l~~~l~~l--~---~-------~~~~iIitt~~~~~~l-----------------~~l~~~L~sR~~ 253 (440)
T 2z4s_A 203 VQFLIGKTGVQTELFHTFNEL--H---D-------SGKQIVICSDREPQKL-----------------SEFQDRLVSRFQ 253 (440)
T ss_dssp GGGGSSCHHHHHHHHHHHHHH--H---T-------TTCEEEEEESSCGGGC-----------------SSCCHHHHHHHH
T ss_pred cccccCChHHHHHHHHHHHHH--H---H-------CCCeEEEEECCCHHHH-----------------HHHHHHHHhhcc
Confidence 999886 7888888888653 1 1 1234566666543221 347899999996
Q ss_pred --ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 388 --KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 388 --~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++.|. |++.+++..|+...+.. .++ .++++++++|+..+- | |+|.+.+++++
T Consensus 254 ~g~~i~l~---~p~~e~r~~iL~~~~~~-------~~~---~i~~e~l~~la~~~~---g-n~R~l~~~L~~ 308 (440)
T 2z4s_A 254 MGLVAKLE---PPDEETRKSIARKMLEI-------EHG---ELPEEVLNFVAENVD---D-NLRRLRGAIIK 308 (440)
T ss_dssp SSBCCBCC---CCCHHHHHHHHHHHHHH-------HTC---CCCTTHHHHHHHHCC---S-CHHHHHHHHHH
T ss_pred CCeEEEeC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHhcC---C-CHHHHHHHHHH
Confidence 688899 99999999998887743 344 679999999997542 6 99999999997
No 68
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.54 E-value=9.3e-15 Score=157.59 Aligned_cols=138 Identities=20% Similarity=0.213 Sum_probs=113.1
Q ss_pred hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHH
Q 036633 5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYF 81 (550)
Q Consensus 5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~ 81 (550)
..+..||+++.++|+.||+|.|+|+|+.+++.+|+| |+++|++||||||+||+ ++++...+.| ..+..+++.
T Consensus 328 e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~--~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p---~~i~~l~~~ 402 (468)
T 3pxg_A 328 DESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDR--YISDRFLPDKAIDLIDEAGSKVRLRSFTTP---PNLKELEQK 402 (468)
T ss_dssp HHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHH--SSCCSCTTHHHHHHHHHHHHHHHHHTTSCC---SSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--HhccCcCCcHHHHHHHHHHHHHHhccCCCc---hHHHHHHHH
Confidence 367899999999999999999999999999999999 99999999999999999 6788888999 999999999
Q ss_pred HHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccHHHHHHHHHHHHhh
Q 036633 82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHG 161 (550)
Q Consensus 82 ~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (550)
+.+++.+....... .|...... +.+-..+++.++++++.+|...-
T Consensus 403 i~~l~~~~~~~~~~-~d~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 447 (468)
T 3pxg_A 403 LDEVRKEKDAAVQS-QEFEKAAS-LRDTEQRLREQVEDTKKSWKEKQ--------------------------------- 447 (468)
T ss_dssp HHHHHHHHHHHHHH-CCSHHHHH-HHHHHHHHHHHHHHHHSGGGHHH---------------------------------
T ss_pred HHHHHHHHHHHHhC-cCHHHHHH-HHHHHHHHHHHHHHHHHHHHhhc---------------------------------
Confidence 99999998877665 55544333 44444555777777777776200
Q ss_pred hhcCCCccCHHHHHHHHHHHhC
Q 036633 162 KFKEKLAVDVEEIAEVASKLTG 183 (550)
Q Consensus 162 ~~~~~~~v~~~~i~~v~~~~~g 183 (550)
......|+.+||++||++|||
T Consensus 448 -~~~~~~~~~~~~~~~~~~~~~ 468 (468)
T 3pxg_A 448 -GQENSEVTVDDIAMVVSSWTG 468 (468)
T ss_dssp -HHHTTCCCTHHHHHHHHTTC-
T ss_pred -cCCCCccCHHHHHHHHHHHhC
Confidence 012567999999999999998
No 69
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=4.2e-14 Score=154.35 Aligned_cols=193 Identities=10% Similarity=0.078 Sum_probs=132.7
Q ss_pred CcccCcHHHHHHHHHHHhcchhh-hcCCCCcC----CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAA-KKGLSSRR----QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~-~~gl~~~~----~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
..++|++.+++.+..++...... ..|+..+. .+ .++||+||||||||++|+++|+.+.. +++.+|++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~------~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY------DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC------EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC------CEEEEeCCC
Confidence 56999999999999999864110 12222221 13 79999999999999999999999866 899999998
Q ss_pred CCchhhhhhHHh----------HHHHH----HHhCCCCeEEeccccccCHHH---HHHHHHhhhhccccccccCCeEeec
Q 036633 280 YTELESIKHFFD----------SLAAL----VKKRPYSVVLFDKIEKANSSI---LNLLLKILKTDFNRKATRGIAAFDL 342 (550)
Q Consensus 280 ~~~~~~~s~liG----------~lt~a----l~~~p~~VlllDEIeka~~~v---~~~Ll~~ld~g~~~~l~d~g~~vd~ 342 (550)
..........++ .+..+ .......||||||++.++... ++.|+++++.+ .
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~----------- 179 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--S----------- 179 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--S-----------
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--C-----------
Confidence 876543222221 11111 012345799999999997643 48888888876 3
Q ss_pred CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK 422 (550)
Q Consensus 343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~ 422 (550)
..||+++|... ...+ +.|.+|+ ..|.|. +++.+++..++...+.. .+
T Consensus 180 --~~iIli~~~~~-------------------~~~l-~~l~~r~-~~i~f~---~~~~~~~~~~L~~i~~~-------~~ 226 (516)
T 1sxj_A 180 --TPLILICNERN-------------------LPKM-RPFDRVC-LDIQFR---RPDANSIKSRLMTIAIR-------EK 226 (516)
T ss_dssp --SCEEEEESCTT-------------------SSTT-GGGTTTS-EEEECC---CCCHHHHHHHHHHHHHH-------HT
T ss_pred --CCEEEEEcCCC-------------------Cccc-hhhHhce-EEEEeC---CCCHHHHHHHHHHHHHH-------cC
Confidence 11445444311 0223 3477777 689999 99999999888766643 34
Q ss_pred CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
+ .+++++++.|+..+- | |.|.+.+.++.
T Consensus 227 ~---~i~~~~l~~la~~s~---G-diR~~i~~L~~ 254 (516)
T 1sxj_A 227 F---KLDPNVIDRLIQTTR---G-DIRQVINLLST 254 (516)
T ss_dssp C---CCCTTHHHHHHHHTT---T-CHHHHHHHHTH
T ss_pred C---CCCHHHHHHHHHHcC---C-cHHHHHHHHHH
Confidence 4 678999999998642 6 77888888764
No 70
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.52 E-value=2.9e-14 Score=153.71 Aligned_cols=178 Identities=15% Similarity=0.191 Sum_probs=115.9
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~ 281 (550)
..|+|++..+..+...+.+. .+.++||+||||||||++|++||..+...+ ....+++.+||+...
T Consensus 180 d~iiGr~~~i~~l~~~l~r~-----------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~ 248 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR-----------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKY 248 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS-----------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------
T ss_pred CCccCcHHHHHHHHHHHhcc-----------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccc
Confidence 46999999999999888765 346889999999999999999999985411 124478899987111
Q ss_pred chhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633 282 ELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV 361 (550)
Q Consensus 282 ~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~ 361 (550)
. .....-+..+.+.+...+.+|||+| ...+.++.|+++++.| . .++|++||...-.-
T Consensus 249 ~-g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g--~-------------v~vI~at~~~e~~~--- 305 (468)
T 3pxg_A 249 R-GEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG--E-------------LQCIGATTLDEYRK--- 305 (468)
T ss_dssp -----CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS--S-------------CEEEEECCTTTTHH---
T ss_pred c-chHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC--C-------------EEEEecCCHHHHHH---
Confidence 0 0110112234444555566899999 6778999999999888 4 33788888652100
Q ss_pred hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcC
Q 036633 362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNA 440 (550)
Q Consensus 362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~ 440 (550)
.-..+|+|.+|| .+|.|. +++.++...|+...+..+.. .+ .+.++++++.+++..+
T Consensus 306 -------------~~~~~~al~~Rf-~~i~v~---~p~~e~~~~iL~~~~~~~~~---~~---~~~i~~~al~~l~~~s 361 (468)
T 3pxg_A 306 -------------YIEKDAALERRF-QPIQVD---QPSVDESIQILQGLRDRYEA---HH---RVSITDDAIEAAVKLS 361 (468)
T ss_dssp -------------HHTTCSHHHHSE-EEEECC---CCCHHHHHHHHHHTTTTSGG---GS---SCSCCHHHHHHHHHHH
T ss_pred -------------HhhcCHHHHHhC-ccceeC---CCCHHHHHHHHHHHHHHHHH---hc---CCCCCHHHHHHHHHHH
Confidence 013578999999 579999 88999999999876543221 23 3478999999998743
No 71
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.50 E-value=5.5e-13 Score=137.41 Aligned_cols=191 Identities=19% Similarity=0.217 Sum_probs=131.6
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE 284 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~ 284 (550)
..++||+.+++.+...+... +. ++.+ .+++|+||||+|||++|++||..+.. ++...+.+.+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~---~~----~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~------~~~~~sg~~~~~~~ 91 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAA---KM----RGEVLDHVLLAGPPGLGKTTLAHIIASELQT------NIHVTSGPVLVKQG 91 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHH---HH----HTCCCCCEEEESSTTSSHHHHHHHHHHHHTC------CEEEEETTTCCSHH
T ss_pred HHccCcHHHHHHHHHHHHHH---Hh----cCCCCCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEechHhcCHH
Confidence 35789999999988887643 11 1233 78999999999999999999999865 55544444332221
Q ss_pred hhhhHHhHHHHHHHh-CCCCeEEeccccccCHHHHHHHHHhhhhccccccc----cC--CeE--eecCCeEEEEeCCCCh
Q 036633 285 SIKHFFDSLAALVKK-RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKAT----RG--IAA--FDLTNTLIIMTSDLKD 355 (550)
Q Consensus 285 ~~s~liG~lt~al~~-~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~----d~--g~~--vd~~~~iiI~TsN~g~ 355 (550)
. +...... ....|+|+||++.+++.+++.|+..++.+ . +. .+ .+. .......++.++|..
T Consensus 92 ~-------l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~--~-~~i~~~~~~~~~~i~~~l~~~~li~at~~~- 160 (334)
T 1in4_A 92 D-------MAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDF--Q-IDIMIGKGPSAKSIRIDIQPFTLVGATTRS- 160 (334)
T ss_dssp H-------HHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTS--C-CCC---------------CCCEEEEEESCG-
T ss_pred H-------HHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhc--c-cceeeccCcccccccccCCCeEEEEecCCc-
Confidence 2 2222222 35579999999999999999999888765 3 21 01 111 122334455555532
Q ss_pred HHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHH
Q 036633 356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVH 435 (550)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~ 435 (550)
..+++.+.+|+...+.|+ |++.+++..++...... .++ .++++++.+
T Consensus 161 --------------------~~Ls~~l~sR~~l~~~Ld---~~~~~~l~~iL~~~~~~-------~~~---~~~~~~~~~ 207 (334)
T 1in4_A 161 --------------------GLLSSPLRSRFGIILELD---FYTVKELKEIIKRAASL-------MDV---EIEDAAAEM 207 (334)
T ss_dssp --------------------GGSCHHHHTTCSEEEECC---CCCHHHHHHHHHHHHHH-------TTC---CBCHHHHHH
T ss_pred --------------------ccCCHHHHHhcCceeeCC---CCCHHHHHHHHHHHHHH-------cCC---CcCHHHHHH
Confidence 357888999997678899 99999999999876542 344 789999999
Q ss_pred HHhcCcccCCCcccHHHHHHcc
Q 036633 436 IASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 436 L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
|+..+- | +.|.+.+++++
T Consensus 208 ia~~~~---G-~~R~a~~ll~~ 225 (334)
T 1in4_A 208 IAKRSR---G-TPRIAIRLTKR 225 (334)
T ss_dssp HHHTST---T-CHHHHHHHHHH
T ss_pred HHHhcC---C-ChHHHHHHHHH
Confidence 998653 5 66888777775
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.50 E-value=2.2e-14 Score=162.26 Aligned_cols=193 Identities=21% Similarity=0.284 Sum_probs=119.5
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCC-CcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLS-SRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE 282 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~-~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~ 282 (550)
...+.|.+++++.+.+.+...+.....+. ...+| ..+||+||||||||.+|+++|..+.. +|+.++.+++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~------~f~~v~~~~l~- 548 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA------NFISIKGPELL- 548 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC------EEEECCHHHHH-
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC------ceEEeccchhh-
Confidence 35688999999998888876411000000 01233 67999999999999999999999877 99999877653
Q ss_pred hhhhhhHHh-------HHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEee
Q 036633 283 LESIKHFFD-------SLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFD 341 (550)
Q Consensus 283 ~~~~s~liG-------~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd 341 (550)
+.++| .+-...++...+||||||||.+-+ .+.+.||..||.- . .
T Consensus 549 ----s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~--~---------~ 613 (806)
T 3cf2_A 549 ----TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM--S---------T 613 (806)
T ss_dssp ----TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSS--C---------S
T ss_pred ----ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCC--C---------C
Confidence 33344 333333444449999999997632 3678888888743 2 1
Q ss_pred cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 036633 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNN 419 (550)
Q Consensus 342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~ 419 (550)
..+++||+|||.. ..++|+++. |||..|.|. +.+.++...|++.++.+
T Consensus 614 ~~~V~vi~aTN~p---------------------~~lD~AllRpgRfd~~i~v~---lPd~~~R~~il~~~l~~------ 663 (806)
T 3cf2_A 614 KKNVFIIGATNRP---------------------DIIDPAILRPGRLDQLIYIP---LPDEKSRVAILKANLRK------ 663 (806)
T ss_dssp SSSEEEECC-CCS---------------------SSSCHHHHSTTTSCCEEEC--------CHHHHTTTTTSSC------
T ss_pred CCCEEEEEeCCCc---------------------hhCCHhHcCCCcceEEEEEC---CcCHHHHHHHHHHHhcC------
Confidence 1567899999975 578999996 999999999 77888888888776632
Q ss_pred cCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 420 DSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 420 ~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
. .+.-+ --++.|++..- |.+|.+|..+++.
T Consensus 664 ---~-~~~~~-~dl~~la~~t~---g~SGadi~~l~~~ 693 (806)
T 3cf2_A 664 ---S-PVAKD-VDLEFLAKMTN---GFSGADLTEICQR 693 (806)
T ss_dssp ---C---CCC--------------------CHHHHHHH
T ss_pred ---C-CCCCC-CCHHHHHHhCC---CCCHHHHHHHHHH
Confidence 1 11111 12455665332 2244788888887
No 73
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.49 E-value=3.3e-14 Score=160.86 Aligned_cols=193 Identities=18% Similarity=0.265 Sum_probs=131.9
Q ss_pred CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
+.|.|.+++++.|.+.+...+. ...|+ ..|..+||+||||||||++|+++|..+.. +|+.++++++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~---~~p~GILL~GPPGTGKT~LAraiA~elg~------~~~~v~~~~l 274 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGV---KPPRGILLYGPPGTGKTLIARAVANETGA------FFFLINGPEI 274 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCC---CCCCEEEEECCTTSCHHHHHHHHHTTTTC------EEEEEEHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCC---CCCCeEEEECCCCCCHHHHHHHHHHHhCC------eEEEEEhHHh
Confidence 5689999999988887754211 11222 12378999999999999999999999877 9999998876
Q ss_pred Cchhh---hhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633 281 TELES---IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTL 346 (550)
Q Consensus 281 ~~~~~---~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i 346 (550)
..... ...+-..|..|....| +||||||||.+- ..+.+.|+..++.- . .-.+++
T Consensus 275 ~sk~~gese~~lr~lF~~A~~~~P-sIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~--~---------~~~~V~ 342 (806)
T 3cf2_A 275 MSKLAGESESNLRKAFEEAEKNAP-AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL--K---------QRAHVI 342 (806)
T ss_dssp HSSCTTHHHHHHHHHHHHHTTSCS-EEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC--C---------GGGCEE
T ss_pred hcccchHHHHHHHHHHHHHHHcCC-eEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc--c---------ccCCEE
Confidence 43211 1111113334433344 899999999764 34677788777643 2 114678
Q ss_pred EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633 347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV 424 (550)
Q Consensus 347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~ 424 (550)
||+|||.. ..++|+|+. |||..|.|. +.+.++...|++.++. +.
T Consensus 343 VIaaTN~~---------------------d~LD~ALrR~GRFd~~I~i~---~Pd~~~R~~IL~~~l~---------~~- 388 (806)
T 3cf2_A 343 VMAATNRP---------------------NSIDPALRRFGRFDREVDIG---IPDATGRLEILQIHTK---------NM- 388 (806)
T ss_dssp EEEECSST---------------------TTSCTTTTSTTSSCEEEECC---CCCHHHHHHHHHHTCS---------SS-
T ss_pred EEEecCCh---------------------hhcCHHHhCCcccceEEecC---CCCHHHHHHHHHHHhc---------CC-
Confidence 99999974 467888886 999999999 8899999999886652 22
Q ss_pred cccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+. ++--+..|+.... |.++.+|..+++.
T Consensus 389 ~~~-~dvdl~~lA~~T~---GfsgaDL~~Lv~e 417 (806)
T 3cf2_A 389 KLA-DDVDLEQVANETH---GHVGADLAALCSE 417 (806)
T ss_dssp EEC-TTCCHHHHHHHCC---SCCHHHHHHHHHH
T ss_pred CCC-cccCHHHHHHhcC---CCCHHHHHHHHHH
Confidence 221 1112556666432 3355888888876
No 74
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.49 E-value=7e-14 Score=130.00 Aligned_cols=157 Identities=12% Similarity=0.168 Sum_probs=105.8
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCC
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNY 280 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~ 280 (550)
-..++|+++.++.+...+... .+.+++|+||||||||++|+.+++.+.... ....+++.++++.+
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~-----------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR-----------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 89 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS-----------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH
T ss_pred ccccccchHHHHHHHHHHhcC-----------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH
Confidence 467999999999988887654 456889999999999999999999984310 01347788887655
Q ss_pred Cchhh----hhhHHhHHHHHH-HhCCCCeEEeccccccC--------HHHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633 281 TELES----IKHFFDSLAALV-KKRPYSVVLFDKIEKAN--------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLI 347 (550)
Q Consensus 281 ~~~~~----~s~liG~lt~al-~~~p~~VlllDEIeka~--------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii 347 (550)
..... ....+..+...+ +.....||+|||++.+. ..+++.|..+++.+ . +.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--~-------------~~~ 154 (195)
T 1jbk_A 90 VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--E-------------LHC 154 (195)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT--S-------------CCE
T ss_pred hccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC--C-------------eEE
Confidence 32111 111111222323 23444699999999985 44588888888766 3 337
Q ss_pred EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHH
Q 036633 348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLR 407 (550)
Q Consensus 348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~ 407 (550)
|+|||...... .-..++.|.+|++ .|.|. +++.++...|+
T Consensus 155 i~~~~~~~~~~----------------~~~~~~~l~~r~~-~i~~~---~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQ----------------YIEKDAALERRFQ-KVFVA---EPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHH----------------HTTTCHHHHTTEE-EEECC---CCCHHHHHTTC
T ss_pred EEeCCHHHHHH----------------HHhcCHHHHHHhc-eeecC---CCCHHHHHHHh
Confidence 77777421100 0135789999996 78999 88998877654
No 75
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.49 E-value=1.5e-13 Score=148.47 Aligned_cols=195 Identities=21% Similarity=0.251 Sum_probs=126.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCC--cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSS--RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL 283 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~--~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~ 283 (550)
+.|+|+++++..+.+.+..... ..-+.+ ..-|..++|+||||||||++|++||..+.. +++.++++++.+.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~-~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~------~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKN-PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV------PFITASGSDFVEM 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHC-GGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC------CEEEEEGGGGTSS
T ss_pred HHcCCcHHHHHHHHHHHHHhhc-hhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC------CEEEEehhHHHHh
Confidence 5699999999888776653200 000111 112445999999999999999999998765 8999999887643
Q ss_pred hh--hhhHHhHHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633 284 ES--IKHFFDSLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLI 347 (550)
Q Consensus 284 ~~--~s~liG~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii 347 (550)
.. ...-++.+.+..+....+++|||||+.+.+ ..++.|+..++.+ . - -+.+++
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~--~-~--------~~~viv 172 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF--E-K--------DTAIVV 172 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC--C-S--------SCCCEE
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc--c-c--------CccEEE
Confidence 21 001111111111112237999999987632 4566777777766 3 1 145678
Q ss_pred EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633 348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI 425 (550)
Q Consensus 348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~ 425 (550)
+++||.. ..++|++++ |+|..|.|. +++.++...|+..++ .+.
T Consensus 173 iAatn~p---------------------~~LD~aLlr~gRfdr~i~i~---~Pd~~~R~~IL~~~~---------~~~-- 217 (499)
T 2dhr_A 173 MAATNRP---------------------DILDPALLRPGRFDRQIAID---APDVKGREQILRIHA---------RGK-- 217 (499)
T ss_dssp EECCSCG---------------------GGSCTTTSSTTSSCCEEECC---CCCHHHHHHHHHHTT---------SSS--
T ss_pred EEecCCh---------------------hhcCcccccccccceEEecC---CCCHHHHHHHHHHHH---------hcC--
Confidence 8888864 346778876 899999999 788888888876544 222
Q ss_pred ccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 426 VCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 426 l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+++++ +..|+. .|+ |..+|+|+++++.
T Consensus 218 -~l~~dv~l~~lA~-~t~--G~~gadL~~lv~~ 246 (499)
T 2dhr_A 218 -PLAEDVDLALLAK-RTP--GFVGADLENLLNE 246 (499)
T ss_dssp -CCCCSSTTHHHHT-TSC--SCCHHHHHHHHHH
T ss_pred -CCChHHHHHHHHH-hcC--CCCHHHHHHHHHH
Confidence 334443 556665 334 5233999999886
No 76
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.47 E-value=3.9e-13 Score=132.64 Aligned_cols=193 Identities=22% Similarity=0.264 Sum_probs=123.9
Q ss_pred CcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
+.++|+++++..+.+....... ...++ .-|..++|+||||||||+++++++..+.. +++.++++.+.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~---~~~~g~ll~G~~G~GKTtl~~~i~~~~~~------~~i~~~~~~~~ 86 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGA---RIPKGVLLVGPPGVGKTHLARAVAGEARV------PFITASGSDFV 86 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTC---CCCSEEEEECCTTSSHHHHHHHHHHHTTC------CEEEEEHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCC---CCCCeEEEECCCCCCHHHHHHHHHHHhCC------CEEEeeHHHHH
Confidence 4588999888777665443200 01112 12334999999999999999999998765 88999876543
Q ss_pred chh--hhhhHHhHHHHHHHhCCCCeEEeccccccC--------------HHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633 282 ELE--SIKHFFDSLAALVKKRPYSVVLFDKIEKAN--------------SSILNLLLKILKTDFNRKATRGIAAFDLTNT 345 (550)
Q Consensus 282 ~~~--~~s~liG~lt~al~~~p~~VlllDEIeka~--------------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ 345 (550)
... .....++.+.+.......+++++|||+.+. ...++.++..++.| . - -+..
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~--~-~--------~~~~ 155 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF--E-K--------DTAI 155 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTC--C-T--------TCCE
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCC--C-C--------CCCE
Confidence 211 111122333333333334799999997542 13456777777766 3 1 1346
Q ss_pred EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633 346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA 423 (550)
Q Consensus 346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~ 423 (550)
++++++|.. ..++|+++. |++..|.|. +++.++...|+...+ .+.
T Consensus 156 i~~a~t~~p---------------------~~ld~~l~r~~rf~~~i~i~---~p~~~~r~~il~~~~---------~~~ 202 (254)
T 1ixz_A 156 VVMAATNRP---------------------DILDPALLRPGRFDRQIAID---APDVKGREQILRIHA---------RGK 202 (254)
T ss_dssp EEEEEESCG---------------------GGSCGGGGSTTSSCEEEECC---SCCHHHHHHHHHHHH---------TTS
T ss_pred EEEEccCCc---------------------hhCCHHHcCCCcCCeEEeeC---CcCHHHHHHHHHHHH---------cCC
Confidence 777888863 356788886 899999999 888899988887554 222
Q ss_pred ccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 424 VIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 424 ~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+++++ ...|+... + |.++|+|+++++.
T Consensus 203 ---~~~~~~~~~~la~~~-~--G~~~~dl~~~~~~ 231 (254)
T 1ixz_A 203 ---PLAEDVDLALLAKRT-P--GFVGADLENLLNE 231 (254)
T ss_dssp ---CBCTTCCHHHHHHTC-T--TCCHHHHHHHHHH
T ss_pred ---CCCcccCHHHHHHHc-C--CCCHHHHHHHHHH
Confidence 233333 56677643 3 5345999999996
No 77
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=3.3e-13 Score=140.04 Aligned_cols=202 Identities=14% Similarity=0.127 Sum_probs=138.4
Q ss_pred hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCC---CCceeEEecCCC
Q 036633 204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDN---DNHLIHFDMGNY 280 (550)
Q Consensus 204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~---~~~li~id~s~~ 280 (550)
....++|++..++.+...+... .. ...+.+++|+||+|||||++++.+++.+.. . ..+++.++|+..
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~---~~----~~~~~~vli~G~~G~GKTtl~~~l~~~~~~---~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPL---YR----EEKPNNIFIYGLTGTGKTAVVKFVLSKLHK---KFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGG---GG----TCCCCCEEEEECTTSSHHHHHHHHHHHHHH---HTCSSCEEEEEEHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHH---Hc----CCCCCeEEEECCCCCCHHHHHHHHHHHHHH---HhcCCceEEEEECCCC
Confidence 3467999999999988887754 21 123478999999999999999999998843 2 347889998754
Q ss_pred Cchhh-------------------hhhHHhHHHHHHHhCC-CCeEEeccccccC----HHHHHHHHHhhhhccccccccC
Q 036633 281 TELES-------------------IKHFFDSLAALVKKRP-YSVVLFDKIEKAN----SSILNLLLKILKTDFNRKATRG 336 (550)
Q Consensus 281 ~~~~~-------------------~s~liG~lt~al~~~p-~~VlllDEIeka~----~~v~~~Ll~~ld~g~~~~l~d~ 336 (550)
..... ...++..+.+.+.... ..||+|||++.+. ++++..|+..++.. .
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~--~----- 160 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV--N----- 160 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC--C-----
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc--C-----
Confidence 32211 1122224444555433 4699999999875 56777777777532 1
Q ss_pred CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc-eeEecCCCCCCHHHHHHHHHHHHHHHH
Q 036633 337 IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK-LVVIDLAVPLLDTTRLLLREWACEETK 415 (550)
Q Consensus 337 g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~-ii~f~~~~pL~~e~i~~I~~~~l~~~~ 415 (550)
-.++.+|++||... +...+.+.+.+|+.. .+.|. ||+.+++..++...+..
T Consensus 161 -----~~~~~~I~~~~~~~------------------~~~~~~~~~~~r~~~~~i~l~---~l~~~~~~~il~~~~~~-- 212 (386)
T 2qby_A 161 -----KSKISFIGITNDVK------------------FVDLLDPRVKSSLSEEEIIFP---PYNAEELEDILTKRAQM-- 212 (386)
T ss_dssp -----C--EEEEEEESCGG------------------GGGGCTTHHHHTTTTEEEEEC---CCCHHHHHHHHHHHHHH--
T ss_pred -----CCeEEEEEEECCCC------------------hHhhhCHHHhccCCCeeEEeC---CCCHHHHHHHHHHHHHh--
Confidence 03456778777431 013456778888863 89999 99999999999887642
Q ss_pred HHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 416 RRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 416 ~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+ . ...+++++.++++..+.+..| |.|.+.++++.
T Consensus 213 -~~--~---~~~~~~~~~~~l~~~~~~~~G-~~r~~~~ll~~ 247 (386)
T 2qby_A 213 -AF--K---PGVLPDNVIKLCAALAAREHG-DARRALDLLRV 247 (386)
T ss_dssp -HB--C---SSCSCHHHHHHHHHHHHHTTC-CHHHHHHHHHH
T ss_pred -hc--c---CCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 11 1 236799999999986543347 77888777775
No 78
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.45 E-value=1e-12 Score=131.73 Aligned_cols=193 Identities=22% Similarity=0.265 Sum_probs=123.7
Q ss_pred CcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
+.++|+++++..+.+....... ...++ .-|..++|+||||||||+++++|+..+.. +++.++++.+.
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~---~~~~gvll~Gp~GtGKTtl~~~i~~~~~~------~~i~~~~~~~~ 110 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGA---RIPKGVLLVGPPGVGKTHLARAVAGEARV------PFITASGSDFV 110 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTC---CCCCEEEEECCTTSSHHHHHHHHHHHTTC------CEEEEEHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCC---CCCCeEEEECCCcChHHHHHHHHHHHcCC------CEEEecHHHHH
Confidence 4689999998877665543200 01111 12334999999999999999999998765 89999876543
Q ss_pred chh--hhhhHHhHHHHHHHhCCCCeEEeccccccC--------------HHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633 282 ELE--SIKHFFDSLAALVKKRPYSVVLFDKIEKAN--------------SSILNLLLKILKTDFNRKATRGIAAFDLTNT 345 (550)
Q Consensus 282 ~~~--~~s~liG~lt~al~~~p~~VlllDEIeka~--------------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ 345 (550)
... .....++.+.+.......+++++|||+.+. ....+.++..++.| . - -+..
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg--~-~--------~~~~ 179 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF--E-K--------DTAI 179 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC--C-T--------TCCE
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC--C-C--------CCCE
Confidence 211 111223333333333344799999997542 23445555556655 2 0 1346
Q ss_pred EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633 346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA 423 (550)
Q Consensus 346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~ 423 (550)
++++++|.. ..++|+++. |++..|.|. +++.++...|+..++. +.
T Consensus 180 i~~a~t~~p---------------------~~ld~~l~r~~rf~~~i~i~---~p~~~~r~~il~~~~~---------~~ 226 (278)
T 1iy2_A 180 VVMAATNRP---------------------DILDPALLRPGRFDRQIAID---APDVKGREQILRIHAR---------GK 226 (278)
T ss_dssp EEEEEESCT---------------------TSSCHHHHSTTSSCCEEECC---CCCHHHHHHHHHHHHT---------TS
T ss_pred EEEEecCCc---------------------hhCCHhHcCCCcCCeEEEeC---CcCHHHHHHHHHHHHc---------cC
Confidence 778888864 457888886 899999999 8889999998876542 22
Q ss_pred ccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633 424 VIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 424 ~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.+++++ +..|+.. ++ |.++|+|+++++.
T Consensus 227 ---~~~~~~~~~~la~~-~~--G~~~~dl~~l~~~ 255 (278)
T 1iy2_A 227 ---PLAEDVDLALLAKR-TP--GFVGADLENLLNE 255 (278)
T ss_dssp ---CBCTTCCHHHHHHT-CT--TCCHHHHHHHHHH
T ss_pred ---CCCcccCHHHHHHH-cC--CCCHHHHHHHHHH
Confidence 233333 5666663 33 5344899999986
No 79
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.41 E-value=7.9e-13 Score=122.64 Aligned_cols=149 Identities=13% Similarity=0.181 Sum_probs=99.1
Q ss_pred hhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEec
Q 036633 202 GRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDM 277 (550)
Q Consensus 202 ~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~ 277 (550)
..--..++|++..+..+...+... .+.+++|+||||||||++|+.+++.+...+ ....+++.+++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSRR-----------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSS-----------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred ccccchhhcchHHHHHHHHHHhCC-----------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 334467999999999988887654 346789999999999999999999884310 01346777777
Q ss_pred CCCCchh----hhhhHHhHHHHHHHhC-CCCeEEeccccccC---------HHHHHHHHHhhhhccccccccCCeEeecC
Q 036633 278 GNYTELE----SIKHFFDSLAALVKKR-PYSVVLFDKIEKAN---------SSILNLLLKILKTDFNRKATRGIAAFDLT 343 (550)
Q Consensus 278 s~~~~~~----~~s~liG~lt~al~~~-p~~VlllDEIeka~---------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~ 343 (550)
+.+.... .....+..+...+... ...||+|||++.+. .++++.|..+++.+ .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~--~------------ 152 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARG--E------------ 152 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT--C------------
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcC--C------------
Confidence 6543111 1111112223333333 34699999999987 67888888888777 3
Q ss_pred CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633 344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID 393 (550)
Q Consensus 344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~ 393 (550)
+++|+|+|...... ...+.+.|.+||+ .|.+.
T Consensus 153 -~~ii~~~~~~~~~~----------------~~~~~~~l~~R~~-~i~i~ 184 (187)
T 2p65_A 153 -LRCIGATTVSEYRQ----------------FIEKDKALERRFQ-QILVE 184 (187)
T ss_dssp -SCEEEEECHHHHHH----------------HTTTCHHHHHHEE-EEECC
T ss_pred -eeEEEecCHHHHHH----------------HHhccHHHHHhcC-cccCC
Confidence 34788887421100 0235789999996 57777
No 80
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.41 E-value=3.3e-14 Score=162.74 Aligned_cols=169 Identities=21% Similarity=0.249 Sum_probs=119.5
Q ss_pred hhcCcccCcHHHHHHHHHHHhcchhh-hcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 203 RLKKRVFGQNDAIDVIFEALTKPKAA-KKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 203 ~L~~~viGQ~~ai~~i~~~l~~~~~~-~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
.....++|++.+++.+...+...... .......-.| ..+||+||||||||++|++||..+.. +++.++++++
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~------~~i~v~~~~l 547 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA------NFISIKGPEL 547 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC------CCCCCCCSSS
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC------CEEEEechHh
Confidence 34567899999999988877653100 0111111234 78999999999999999999999876 8999999987
Q ss_pred Cchh--hhhhHHhHHHHHHHhCCCCeEEecccccc--------------CHHHHHHHHHhhhhccccccccCCeEeecCC
Q 036633 281 TELE--SIKHFFDSLAALVKKRPYSVVLFDKIEKA--------------NSSILNLLLKILKTDFNRKATRGIAAFDLTN 344 (550)
Q Consensus 281 ~~~~--~~s~liG~lt~al~~~p~~VlllDEIeka--------------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~ 344 (550)
.... .....++.+.+..+....+|||||||+.+ +..+++.||+.|+.. . +..+
T Consensus 548 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~--~---------~~~~ 616 (806)
T 1ypw_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM--S---------TKKN 616 (806)
T ss_dssp TTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------C
T ss_pred hhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc--c---------ccCC
Confidence 5431 11122333334444444489999999974 346778888888755 2 2367
Q ss_pred eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633 345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACE 412 (550)
Q Consensus 345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~ 412 (550)
++||+|||.. ..++|+++. ||+.+|.|. +++.++...|+..++.
T Consensus 617 v~vI~tTN~~---------------------~~ld~allrpgRf~~~i~~~---~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 617 VFIIGATNRP---------------------DIIDPAILRPGRLDQLIYIP---LPDEKSRVAILKANLR 662 (806)
T ss_dssp CBCCCCCBSC---------------------GGGSCTTSSGGGTTSCCCCC---CCCCSHHHHHTTTTTS
T ss_pred eEEEEecCCc---------------------ccCCHHHhCccccCceeecC---CCCHHHHHHHHHHHhc
Confidence 8899999974 357888997 999999999 8899999999887774
No 81
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.40 E-value=1.8e-12 Score=149.55 Aligned_cols=182 Identities=15% Similarity=0.190 Sum_probs=115.6
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~ 281 (550)
..++|+++.+..+...+.+. .+.+++|+||||||||++|+.+|..+.... ....+++.+||+.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~-----------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~ 238 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR-----------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLL 238 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS-----------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----
T ss_pred cccCCcHHHHHHHHHHHhcC-----------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhh
Confidence 56999999999999988754 345789999999999999999999884310 014478999998775
Q ss_pred chhhh----hhHHhHHHHHHHhC-CCCeEEeccccccC--------HHHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633 282 ELESI----KHFFDSLAALVKKR-PYSVVLFDKIEKAN--------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLII 348 (550)
Q Consensus 282 ~~~~~----s~liG~lt~al~~~-p~~VlllDEIeka~--------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI 348 (550)
..... ...+..+...+... ...||||||++.+. .++++.|.++++.| . ..+|
T Consensus 239 ~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~-------------i~~I 303 (854)
T 1qvr_A 239 AGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--E-------------LRLI 303 (854)
T ss_dssp -------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--C-------------CCEE
T ss_pred ccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--C-------------eEEE
Confidence 32111 01111223333332 34699999999987 67788899999888 4 2267
Q ss_pred EeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 036633 349 MTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCP 428 (550)
Q Consensus 349 ~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~ 428 (550)
++||.+... . -...|+|.+||+ .|.|. +++.++...|+...+..+.. .+++ .+
T Consensus 304 ~at~~~~~~--------------~---~~~d~aL~rRf~-~i~l~---~p~~~e~~~iL~~~~~~~~~---~~~~---~i 356 (854)
T 1qvr_A 304 GATTLDEYR--------------E---IEKDPALERRFQ-PVYVD---EPTVEETISILRGLKEKYEV---HHGV---RI 356 (854)
T ss_dssp EEECHHHHH--------------H---HTTCTTTCSCCC-CEEEC---CCCHHHHHHHHHHHHHHHHH---HTTC---EE
T ss_pred EecCchHHh--------------h---hccCHHHHhCCc-eEEeC---CCCHHHHHHHHHhhhhhhhh---hcCC---CC
Confidence 777743110 0 134788999995 68999 89999999999887765543 2444 78
Q ss_pred CHHHHHHHHhcC
Q 036633 429 STSALVHIASNA 440 (550)
Q Consensus 429 ~~~a~~~L~~~~ 440 (550)
+++++.+++..+
T Consensus 357 ~~~al~~~~~ls 368 (854)
T 1qvr_A 357 SDSAIIAAATLS 368 (854)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 899988887743
No 82
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.39 E-value=7.2e-13 Score=151.09 Aligned_cols=177 Identities=15% Similarity=0.187 Sum_probs=113.7
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~ 281 (550)
..++|++..+..+...+.+. .+.++||+||||||||++|+++|+.+...+ ....+++.+|++. .
T Consensus 180 d~iiG~~~~i~~l~~~l~~~-----------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~-~ 247 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR-----------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT-K 247 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS-----------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------
T ss_pred CCccCchHHHHHHHHHHhCC-----------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccc-c
Confidence 46999999999999988765 446899999999999999999999984411 1234777778711 0
Q ss_pred chhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633 282 ELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV 361 (550)
Q Consensus 282 ~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~ 361 (550)
.......-+..+.+.+.....+||||| ...+.++.|+++++.| . .++|+|||...-.-
T Consensus 248 ~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~--~-------------v~~I~at~~~~~~~--- 305 (758)
T 3pxi_A 248 YRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG--E-------------LQCIGATTLDEYRK--- 305 (758)
T ss_dssp -----CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS--S-------------CEEEEECCTTTTHH---
T ss_pred ccchHHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcC--C-------------EEEEeCCChHHHHH---
Confidence 001111111133344444566899999 6678999999999888 3 34788888642100
Q ss_pred hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633 362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN 439 (550)
Q Consensus 362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~ 439 (550)
.-..+|+|.+|| .+|.|. +++.+++..|+...+..+.. .. .+.++++++.+++..
T Consensus 306 -------------~~~~d~al~rRf-~~i~v~---~p~~~~~~~il~~~~~~~~~---~~---~~~i~~~al~~~~~~ 360 (758)
T 3pxi_A 306 -------------YIEKDAALERRF-QPIQVD---QPSVDESIQILQGLRDRYEA---HH---RVSITDDAIEAAVKL 360 (758)
T ss_dssp -------------HHTTCSHHHHSE-EEEECC---CCCHHHHHHHHHHTTTTSGG---GS---SCSCCHHHHHHHHHH
T ss_pred -------------HhhccHHHHhhC-cEEEeC---CCCHHHHHHHHHHHHHHHHH---hc---CCCCCHHHHHHHHHH
Confidence 013589999999 689999 88999999999865533211 13 347899998888764
No 83
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.39 E-value=4.5e-12 Score=127.01 Aligned_cols=198 Identities=21% Similarity=0.241 Sum_probs=128.7
Q ss_pred CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
..|.|.+++++.+.+.+..... ...|+. -|..++|+||||||||++|++||..+.. +++.++.+++
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~---~~~GvlL~Gp~GtGKTtLakala~~~~~------~~i~i~g~~l 80 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLV---TPAGVLLAGPPGCGKTLLAKAVANESGL------NFISVKGPEL 80 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCC---CCSEEEEESSTTSCHHHHHHHHHHHTTC------EEEEEETTTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC---CCCeEEEECCCCCcHHHHHHHHHHHcCC------CEEEEEcHHH
Confidence 4578888888887776643310 012332 2333999999999999999999998765 7999998877
Q ss_pred Cchh--hhhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633 281 TELE--SIKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLI 347 (550)
Q Consensus 281 ~~~~--~~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii 347 (550)
.... ...+.++.+.+..+....+++|+||++... ..+.+.++..|+.|+-. +.+++
T Consensus 81 ~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~-----------~~~i~ 149 (274)
T 2x8a_A 81 LNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR-----------QQVFI 149 (274)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST-----------TCEEE
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc-----------CCEEE
Confidence 5432 122334443333333344899999998742 23567778888777212 55778
Q ss_pred EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633 348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI 425 (550)
Q Consensus 348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~ 425 (550)
++++|.. ..++|+++. |||..|.|. +.+.++...|++.++.. ....
T Consensus 150 ia~tn~p---------------------~~LD~al~r~gRfd~~i~~~---~P~~~~r~~il~~~~~~------~~~~-- 197 (274)
T 2x8a_A 150 MAATNRP---------------------DIIDPAILRPGRLDKTLFVG---LPPPADRLAILKTITKN------GTKP-- 197 (274)
T ss_dssp EEEESCG---------------------GGSCHHHHSTTSSCEEEECC---SCCHHHHHHHHHHHTTT------TBTT--
T ss_pred EeecCCh---------------------hhCCHhhcCcccCCeEEEeC---CcCHHHHHHHHHHHHhc------ccCC--
Confidence 8888864 467888986 999999999 88999999998876532 0111
Q ss_pred ccCCHH-HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 426 VCPSTS-ALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 426 l~~~~~-a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
.++.+ ..+.|+.... .-|..|.+|..+++.
T Consensus 198 -~~~~~~~~~~la~~~~-~~g~sgadl~~l~~~ 228 (274)
T 2x8a_A 198 -PLDADVNLEAIAGDLR-CDCYTGADLSALVRE 228 (274)
T ss_dssp -BBCTTCCHHHHHTCSG-GGSCCHHHHHHHHHH
T ss_pred -CCccccCHHHHHHhhc-cCCcCHHHHHHHHHH
Confidence 12211 2455665311 012255889999887
No 84
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.35 E-value=7.8e-12 Score=142.54 Aligned_cols=181 Identities=14% Similarity=0.220 Sum_probs=125.1
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~ 281 (550)
..++|++..+..+...+.+. .+.+++|+||||||||++|+.+|..+...+ .....++.+|++.+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~-----------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~ 254 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR-----------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL 254 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-----------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---
T ss_pred CCccCCHHHHHHHHHHHhcc-----------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh
Confidence 56999999999998888754 346889999999999999999999884311 013357777777654
Q ss_pred chhh----hhhHHhHHHHHHHhCCCCeEEecccccc---------CHHHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633 282 ELES----IKHFFDSLAALVKKRPYSVVLFDKIEKA---------NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLII 348 (550)
Q Consensus 282 ~~~~----~s~liG~lt~al~~~p~~VlllDEIeka---------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI 348 (550)
.... ....+..+.+.+...+.+||||||++.+ ..+.++.|.++++.| . ..+|
T Consensus 255 ~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~--~-------------~~~I 319 (758)
T 1r6b_X 255 AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--K-------------IRVI 319 (758)
T ss_dssp CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC--C-------------CEEE
T ss_pred ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCC--C-------------eEEE
Confidence 2211 1111123333444455689999999987 456778888888777 3 3477
Q ss_pred EeCCCChHHHHHhhhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633 349 MTSDLKDEQVYEVMLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV 426 (550)
Q Consensus 349 ~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l 426 (550)
.+||... ..+.| +|.|.+||+ .|.|. +++.++...|+...+..+... + .+
T Consensus 320 ~at~~~~------------------~~~~~~~d~aL~~Rf~-~i~v~---~p~~~e~~~il~~l~~~~~~~---~---~v 371 (758)
T 1r6b_X 320 GSTTYQE------------------FSNIFEKDRALARRFQ-KIDIT---EPSIEETVQIINGLKPKYEAH---H---DV 371 (758)
T ss_dssp EEECHHH------------------HHCCCCCTTSSGGGEE-EEECC---CCCHHHHHHHHHHHHHHHHHH---H---TC
T ss_pred EEeCchH------------------HhhhhhcCHHHHhCce-EEEcC---CCCHHHHHHHHHHHHHHHHHh---c---CC
Confidence 7777421 12344 578999995 89999 999999999998777654432 3 34
Q ss_pred cCCHHHHHHHHhcC
Q 036633 427 CPSTSALVHIASNA 440 (550)
Q Consensus 427 ~~~~~a~~~L~~~~ 440 (550)
.+++++++.++..+
T Consensus 372 ~~~~~al~~~~~~s 385 (758)
T 1r6b_X 372 RYTAKAVRAAVELA 385 (758)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 78999998888643
No 85
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.19 E-value=7.5e-11 Score=124.78 Aligned_cols=226 Identities=8% Similarity=-0.059 Sum_probs=131.1
Q ss_pred HHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHH-HHHhccCCCCCCcee
Q 036633 196 RYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAI-ANELYDNNDNDNHLI 273 (550)
Q Consensus 196 ~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~l-a~~l~~~~~~~~~li 273 (550)
.+..+...+.. |+||+.++..+.-++... ... .+. .++|+.|+||| ||.+|+.+ ++.+.+ . .+.
T Consensus 204 ~~~~l~~sIap-I~G~e~vK~aLll~L~GG------~~k-~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR---~--~ft 269 (506)
T 3f8t_A 204 PLTTFARAIAP-LPGAEEVGKMLALQLFSC------VGK-NSERLHVLLAGYPVV-CSEILHHVLDHLAPR---G--VYV 269 (506)
T ss_dssp HHHHHHHHHCC-STTCHHHHHHHHHHHTTC------CSS-GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS---E--EEE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHcCC------ccc-cCCceeEEEECCCCh-HHHHHHHHHHHhCCC---e--EEe
Confidence 35677788889 999999887776666543 111 122 58999999999 99999999 877644 0 111
Q ss_pred EEecCC---CC----chhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633 274 HFDMGN---YT----ELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTL 346 (550)
Q Consensus 274 ~id~s~---~~----~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i 346 (550)
...++. +. +.....---|.+ ....++|+|+|||+++++..|..|+++|++| . ++-.|. .--.++.
T Consensus 270 ~g~~ss~~gLt~s~r~~tG~~~~~G~l----~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~--~-VtI~G~-~lparf~ 341 (506)
T 3f8t_A 270 DLRRTELTDLTAVLKEDRGWALRAGAA----VLADGGILAVDHLEGAPEPHRWALMEAMDKG--T-VTVDGI-ALNARCA 341 (506)
T ss_dssp EGGGCCHHHHSEEEEESSSEEEEECHH----HHTTTSEEEEECCTTCCHHHHHHHHHHHHHS--E-EEETTE-EEECCCE
T ss_pred cCCCCCccCceEEEEcCCCcccCCCee----EEcCCCeeehHhhhhCCHHHHHHHHHHHhCC--c-EEECCE-EcCCCeE
Confidence 111110 00 000000001222 2234589999999999999999999999999 5 544455 2234577
Q ss_pred EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHH-----HH-HHHHHHHHHHHHhcc
Q 036633 347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTR-----LL-LREWACEETKRRNND 420 (550)
Q Consensus 347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i-----~~-I~~~~l~~~~~~l~~ 420 (550)
||+|+|.-. .... +. . . -.-.+++++++|||-++... .+...+. .. +-...+.++....++
T Consensus 342 VIAA~NP~~-~yd~---~~--s-~---~~~~Lp~alLDRFDLi~i~~---d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~ 408 (506)
T 3f8t_A 342 VLAAINPGE-QWPS---DP--P-I---ARIDLDQDFLSHFDLIAFLG---VDPRPGEPEEQDTEVPSYTLLRRYLLYAIR 408 (506)
T ss_dssp EEEEECCCC---CC---SC--G-G---GGCCSCHHHHTTCSEEEETT---C--------------CCHHHHHHHHHHHHH
T ss_pred EEEEeCccc-ccCC---CC--C-c---cccCCChHHhhheeeEEEec---CCCChhHhhcccCCCCCHHHHHHHHHHHHh
Confidence 999999854 1100 00 0 0 02367999999998766554 3322111 00 111122222222221
Q ss_pred CCCccccCCHHHHHHHHhcCc--------------ccCCCcccHHHHHHcc
Q 036633 421 SKAVIVCPSTSALVHIASNAA--------------RKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 421 ~~~~~l~~~~~a~~~L~~~~~--------------~~~GaN~R~L~~~i~~ 457 (550)
..+ ...+++++.++|.+... ..+|+..|.+..++.-
T Consensus 409 ~~~-~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRl 458 (506)
T 3f8t_A 409 EHP-APELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERL 458 (506)
T ss_dssp HCS-CCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHH
T ss_pred cCC-CceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHH
Confidence 233 56889999988875311 1235555878777774
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.15 E-value=1.1e-10 Score=133.68 Aligned_cols=164 Identities=18% Similarity=0.234 Sum_probs=113.3
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCC--cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSS--RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL 283 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~--~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~ 283 (550)
+.|+|++.+++.+.+.+...+....-+.. -..|..++|+||||||||++|++||..+.. +++.++++++...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~------~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA------FFFLINGPEIMSK 277 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC------EEEEEEHHHHSSS
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC------cEEEEEchHhhhh
Confidence 56999999999999888753110100100 112378999999999999999999998866 8999998776532
Q ss_pred h--hhhhHHh-HHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEE
Q 036633 284 E--SIKHFFD-SLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIM 349 (550)
Q Consensus 284 ~--~~s~liG-~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~ 349 (550)
. .....++ .+..+....| +++|+|||+.+. ..+++.|+..++.- . .-.++++|+
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p-~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~--~---------~~~~v~vI~ 345 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAP-AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL--K---------QRAHVIVMA 345 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCS-EEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSS--C---------TTSCCEEEE
T ss_pred hhhhHHHHHHHHHHHHHhcCC-cEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhh--c---------ccccEEEec
Confidence 1 1122233 3444444444 899999997654 34778888888643 2 014577889
Q ss_pred eCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHH
Q 036633 350 TSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWAC 411 (550)
Q Consensus 350 TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l 411 (550)
|||.. ..++|.+.. |++..+.+. .++.++...|+...+
T Consensus 346 atn~~---------------------~~ld~al~r~gRf~~~i~i~---~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 346 ATNRP---------------------NSIDPALRRFGRFDREVDIG---IPDATGRLEILQIHT 385 (806)
T ss_dssp ECSCT---------------------TTSCTTTTSTTSSCEEECCC---CCCHHHHHHHHHHTT
T ss_pred ccCCc---------------------hhcCHHHhcccccccccccC---CCCHHHHHHHHHHHH
Confidence 99864 345666665 898888898 888888888877544
No 87
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.10 E-value=2.7e-10 Score=119.58 Aligned_cols=211 Identities=12% Similarity=0.087 Sum_probs=131.3
Q ss_pred hcCcccCcHHHHHHHHHHH-hcchhhhcCCCCcCCCeeEEE--eccCCCcHHHHHHHHHHHhccCC---CCCCceeEEec
Q 036633 204 LKKRVFGQNDAIDVIFEAL-TKPKAAKKGLSSRRQLGLFLF--AGPNCSGKAELAKAIANELYDNN---DNDNHLIHFDM 277 (550)
Q Consensus 204 L~~~viGQ~~ai~~i~~~l-~~~~~~~~gl~~~~~p~~lLf--~Gp~GvGKT~lAk~la~~l~~~~---~~~~~li~id~ 277 (550)
....++|.+..++.+...+ ... ..|.. ..+.++++ +||+|||||++++.+++.+.... .....++.++|
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~---~~~~~--~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRL---LSGAG--LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHH---HTSSC--BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCCCChHHHHHHHHHHHhHHH---hcCCC--CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 4477999999999999988 654 32210 23468888 99999999999999998874300 00235788888
Q ss_pred CCCCchhhh-h------------------hHHhHHHHHHHh-CCCCeEEeccccccC------HHHHHHHHHhhhhcccc
Q 036633 278 GNYTELESI-K------------------HFFDSLAALVKK-RPYSVVLFDKIEKAN------SSILNLLLKILKTDFNR 331 (550)
Q Consensus 278 s~~~~~~~~-s------------------~liG~lt~al~~-~p~~VlllDEIeka~------~~v~~~Ll~~ld~g~~~ 331 (550)
........+ . .++..+...+.. ....||+|||++.+. .+++..|++.+++. .
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~--~ 172 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI--P 172 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS--C
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc--c
Confidence 654322111 1 111233333432 223689999999864 47777777777643 1
Q ss_pred ccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCC---hhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633 332 KATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFK---PSLLKLLDKLVVIDLAVPLLDTTRLLLRE 408 (550)
Q Consensus 332 ~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~---p~ll~Rid~ii~f~~~~pL~~e~i~~I~~ 408 (550)
.... -.++.+|+|||... .. ..+. +.+.+++...+.|. ||+.+++..++.
T Consensus 173 -~~~~-----~~~v~lI~~~~~~~--~~----------------~~l~~~~~~~~~~~~~~i~l~---~l~~~e~~~ll~ 225 (412)
T 1w5s_A 173 -SRDG-----VNRIGFLLVASDVR--AL----------------SYMREKIPQVESQIGFKLHLP---AYKSRELYTILE 225 (412)
T ss_dssp -CTTS-----CCBEEEEEEEEETH--HH----------------HHHHHHCHHHHTTCSEEEECC---CCCHHHHHHHHH
T ss_pred -cCCC-----CceEEEEEEecccc--HH----------------HHHhhhcchhhhhcCCeeeeC---CCCHHHHHHHHH
Confidence 1000 03456777776321 10 0112 44556655558888 999999999988
Q ss_pred HHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccC---CCcccHHHHHHcc
Q 036633 409 WACEETKRRNNDSKAVIVCPSTSALVHIASNAARKY---GQNGEGLKRWMDQ 457 (550)
Q Consensus 409 ~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~---GaN~R~L~~~i~~ 457 (550)
..+... +. ...+++++...+...+.+.. | |.|.+..++..
T Consensus 226 ~~~~~~-------~~-~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~ 268 (412)
T 1w5s_A 226 QRAELG-------LR-DTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKM 268 (412)
T ss_dssp HHHHHH-------BC-TTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHH
T ss_pred HHHHhc-------CC-CCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHH
Confidence 766431 11 23578999999987654333 6 77877777664
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.08 E-value=4.2e-10 Score=104.87 Aligned_cols=149 Identities=16% Similarity=0.104 Sum_probs=87.8
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhc-cCCCCCCceeEEecCCCCchhhhhh
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELY-DNNDNDNHLIHFDMGNYTELESIKH 288 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~-~~~~~~~~li~id~s~~~~~~~~s~ 288 (550)
+|..++..+...+... . ...+..++|+||||||||+++++++..+. . ....++.+++.++.+......
T Consensus 18 ~~~~~~~~~~~~~~~~-------~-~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~~ 86 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNF-------N-PEEGKGLTFVGSPGVGKTHLAVATLKAIYEK---KGIRGYFFDTKDLIFRLKHLM 86 (180)
T ss_dssp HHHHHHHHHHHHHHSC-------C-GGGCCEEEECCSSSSSHHHHHHHHHHHHHHH---SCCCCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-------c-ccCCCEEEEECCCCCCHHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHHHHHHh
Confidence 4666776666655543 1 11236899999999999999999999985 3 233566667655432111000
Q ss_pred HHh---HHHHHHHhCCCCeEEecccc--ccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhh
Q 036633 289 FFD---SLAALVKKRPYSVVLFDKIE--KANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVML 363 (550)
Q Consensus 289 liG---~lt~al~~~p~~VlllDEIe--ka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~ 363 (550)
--+ .+...+. .| .+|+|||++ ..++..+..|.++++.- . . .+..+|+|||...+.+...
T Consensus 87 ~~~~~~~~~~~~~-~~-~llilDE~~~~~~~~~~~~~l~~ll~~~--~--~--------~~~~ii~tsn~~~~~~~~~-- 150 (180)
T 3ec2_A 87 DEGKDTKFLKTVL-NS-PVLVLDDLGSERLSDWQRELISYIITYR--Y--N--------NLKSTIITTNYSLQREEES-- 150 (180)
T ss_dssp HHTCCSHHHHHHH-TC-SEEEEETCSSSCCCHHHHHHHHHHHHHH--H--H--------TTCEEEEECCCCSCC---C--
T ss_pred cCchHHHHHHHhc-CC-CEEEEeCCCCCcCCHHHHHHHHHHHHHH--H--H--------cCCCEEEEcCCChhHhhhh--
Confidence 000 2223333 23 699999998 57788888888888654 2 0 2345788999875442100
Q ss_pred hhhHhhHHHHhccCCChhhhhhccc
Q 036633 364 TATYGRVNEVTGSLFKPSLLKLLDK 388 (550)
Q Consensus 364 ~~~~~~~~~~l~~~f~p~ll~Rid~ 388 (550)
.-...+.+...|...+.+|+..
T Consensus 151 ---~~~~~~~l~~~~~~~i~~rl~~ 172 (180)
T 3ec2_A 151 ---SVRISADLASRLGENVVSKIYE 172 (180)
T ss_dssp ---HHHHHHHHHHHHCHHHHHHHHH
T ss_pred ---ccchhhHHHHHHHHHHHHHHHh
Confidence 0001133345566677777643
No 89
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.01 E-value=2.3e-10 Score=108.44 Aligned_cols=105 Identities=20% Similarity=0.168 Sum_probs=65.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH---HhHHHHHHHhCCCCeEEeccccccC-
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF---FDSLAALVKKRPYSVVLFDKIEKAN- 314 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l---iG~lt~al~~~p~~VlllDEIeka~- 314 (550)
.+++|+||||||||++|++++..+.. ...+++.++++++........- +..+.+.+... .+|+|||++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lilDei~~~~~ 129 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKV--PVLMLDDLGAEAM 129 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHS--SEEEEEEECCC--
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCC--CEEEEcCCCCCcC
Confidence 68999999999999999999999876 5567888887654321110000 01223333332 599999996644
Q ss_pred -HHHHHHHH-HhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 315 -SSILNLLL-KILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 315 -~~v~~~Ll-~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
+..+..++ .+++.. . . .+..+|+|||.....+..
T Consensus 130 ~~~~~~~ll~~~l~~~--~--~--------~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 130 SSWVRDDVFGPILQYR--M--F--------ENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp -CCGGGTTHHHHHHHH--H--H--------TTCCEEEEESSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--H--h--------CCCCEEEEcCCCHHHHHH
Confidence 33344333 455443 1 0 123489999988766644
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.97 E-value=4.9e-10 Score=140.41 Aligned_cols=145 Identities=11% Similarity=0.115 Sum_probs=104.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHh---------CC-----CCe
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKK---------RP-----YSV 304 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~---------~p-----~~V 304 (550)
.++||+||||||||.+|+.+...+ ....++.++++..+....+. +.+...+.. .| ..|
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~-----~~~~~~~infsa~ts~~~~~---~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS-----SLYDVVGINFSKDTTTEHIL---SALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-----SSCEEEEEECCTTCCHHHHH---HHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC-----CCCceEEEEeecCCCHHHHH---HHHHHHhhhccccCCccccCCCCCceEE
Confidence 589999999999999995554433 23478889999887654432 222222110 11 249
Q ss_pred EEeccccccCH------HHHHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc
Q 036633 305 VLFDKIEKANS------SILNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS 376 (550)
Q Consensus 305 lllDEIeka~~------~v~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~ 376 (550)
+|+|||+.... .++..|.|++|.| . +.+. +..+.+.++.+|+|+|.+... . +.
T Consensus 1340 lFiDEinmp~~d~yg~q~~lelLRq~le~g--g-~yd~~~~~~~~~~~i~lIaA~Npp~~g------G----------R~ 1400 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQNVVLFLRQLMEKQ--G-FWKTPENKWVTIERIHIVGACNPPTDP------G----------RI 1400 (2695)
T ss_dssp EEEETTTCSCCCSSSCCHHHHHHHHHHHTS--S-EECTTTCCEEEEESEEEEEEECCTTST------T----------CC
T ss_pred EEecccccccccccCchhHHHHHHHHHhcC--C-EEEcCCCcEEEecCEEEEEecCCCccC------C----------Cc
Confidence 99999876543 4899999999988 5 4443 556667899999999975210 0 23
Q ss_pred CCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH
Q 036633 377 LFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET 414 (550)
Q Consensus 377 ~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~ 414 (550)
..+|.|++|+ .+|.+. +++.+++..|....+...
T Consensus 1401 ~l~~rllRrf-~vi~i~---~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1401 PMSERFTRHA-AILYLG---YPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp CCCHHHHTTE-EEEECC---CCTTTHHHHHHHHHHHHH
T ss_pred cCChhhhhee-eEEEeC---CCCHHHHHHHHHHHHHHH
Confidence 5689999999 799999 899999999999888653
No 91
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.92 E-value=7.1e-09 Score=106.67 Aligned_cols=165 Identities=14% Similarity=0.058 Sum_probs=114.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCc--eeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccc-cCH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNH--LIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEK-ANS 315 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~--li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIek-a~~ 315 (550)
.++||+||+|+||++.++.|++.+... ...+ .+.++ + ...+..++..+...---.++.||++||++. ++.
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~-~----~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~ 91 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQ--GFEEHHTFSID-P----NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA 91 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHH--TCCEEEEEECC-T----TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhC--CCCeeEEEEec-C----CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh
Confidence 699999999999999999999987641 1112 23333 1 123333333222111234567999999999 999
Q ss_pred HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCC-CChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecC
Q 036633 316 SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSD-LKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDL 394 (550)
Q Consensus 316 ~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN-~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~ 394 (550)
+.++.|++++++. . .++++|++++ .+...- ...+.+.+.+|+ .++.|.
T Consensus 92 ~~~~aLl~~le~p--~-----------~~~~~il~~~~~~~~~~----------------~~k~~~~i~sr~-~~~~~~- 140 (343)
T 1jr3_D 92 AINEQLLTLTGLL--H-----------DDLLLIVRGNKLSKAQE----------------NAAWFTALANRS-VQVTCQ- 140 (343)
T ss_dssp THHHHHHHHHTTC--B-----------TTEEEEEEESCCCTTTT----------------TSHHHHHHTTTC-EEEEEC-
T ss_pred HHHHHHHHHHhcC--C-----------CCeEEEEEcCCCChhhH----------------hhHHHHHHHhCc-eEEEee-
Confidence 9999999999876 4 4566666554 321000 123456788999 799999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633 395 AVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ 457 (550)
Q Consensus 395 ~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~ 457 (550)
|++.+++...+...+.. .|+ .++++++++|+..+- | |.|.+.+.+++
T Consensus 141 --~l~~~~l~~~l~~~~~~-------~g~---~i~~~a~~~l~~~~~---g-dl~~~~~elek 187 (343)
T 1jr3_D 141 --TPEQAQLPRWVAARAKQ-------LNL---ELDDAANQVLCYCYE---G-NLLALAQALER 187 (343)
T ss_dssp --CCCTTHHHHHHHHHHHH-------TTC---EECHHHHHHHHHSST---T-CHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHhc---h-HHHHHHHHHHH
Confidence 99999999888877743 555 789999999998543 4 66878777764
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.88 E-value=2.7e-09 Score=96.86 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=77.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL 318 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~ 318 (550)
.+++|+||+|+|||+++++++..+.. .....+.++..++... .+ ...| .+|+|||++...+..+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~~~~~~~~~~~~~----~~--------~~~~-~lLilDE~~~~~~~~~ 100 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE---AGKNAAYIDAASMPLT----DA--------AFEA-EYLAVDQVEKLGNEEQ 100 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT---TTCCEEEEETTTSCCC----GG--------GGGC-SEEEEESTTCCCSHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEcHHHhhHH----HH--------HhCC-CEEEEeCccccChHHH
Confidence 58899999999999999999998865 3335788888777543 11 1223 7999999999988778
Q ss_pred HHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633 319 NLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID 393 (550)
Q Consensus 319 ~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~ 393 (550)
..|+++++.- . .. ..+++|+|||.....+ ... |.+.+|+..-..+.
T Consensus 101 ~~l~~li~~~--~--~~-------g~~~iiits~~~p~~l-----------------~~~-~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 101 ALLFSIFNRF--R--NS-------GKGFLLLGSEYTPQQL-----------------VIR-EDLRTRMAYCLVYE 146 (149)
T ss_dssp HHHHHHHHHH--H--HH-------TCCEEEEEESSCTTTS-----------------SCC-HHHHHHGGGSEECC
T ss_pred HHHHHHHHHH--H--Hc-------CCcEEEEECCCCHHHc-----------------ccc-HHHHHHHhcCeeEE
Confidence 8888888643 2 10 1233677888654322 223 88999996555443
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.86 E-value=2e-08 Score=126.16 Aligned_cols=135 Identities=17% Similarity=0.157 Sum_probs=99.0
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHH
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILN 319 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~ 319 (550)
..++.||+|||||++++.+|+.++. +++++||++-.+.....+ .+.++.+. +++++|||+++++++++.
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~lg~------~~v~~nc~e~ld~~~lg~---~~~g~~~~--Gaw~~~DE~nr~~~evLs 715 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNLGR------VVVVFNCDDSFDYQVLSR---LLVGITQI--GAWGCFDEFNRLDEKVLS 715 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTC------CCEEEETTSSCCHHHHHH---HHHHHHHH--TCEEEEETTTSSCHHHHH
T ss_pred CCcccCCCCCCcHHHHHHHHHHhCC------cEEEEECCCCCChhHhhH---HHHHHHhc--CCEeeehhhhhcChHHHH
Confidence 5678999999999999999999988 999999999887655433 34444443 379999999999999999
Q ss_pred HH-------HHhhhhccccccccCCeEeecC-CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeE
Q 036633 320 LL-------LKILKTDFNRKATRGIAAFDLT-NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391 (550)
Q Consensus 320 ~L-------l~~ld~g~~~~l~d~g~~vd~~-~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~ 391 (550)
.+ +..+.++..+ +...|..+... ++.|++|.|.|... ...+++.|.+|| ..|.
T Consensus 716 ~l~~~l~~i~~al~~~~~~-i~~~g~~i~l~~~~~vfiT~NPgy~g-----------------~~eLP~~Lk~~F-r~v~ 776 (2695)
T 4akg_A 716 AVSANIQQIQNGLQVGKSH-ITLLEEETPLSPHTAVFITLNPGYNG-----------------RSELPENLKKSF-REFS 776 (2695)
T ss_dssp HHHHHHHHHHHHHHHTCSE-EECSSSEEECCTTCEEEEEECCCSSS-----------------SCCCCHHHHTTE-EEEE
T ss_pred HHHHHHHHHHHHHHcCCcE-EeeCCcEEecCCCceEEEEeCCCccC-----------------cccccHHHHhhe-EEEE
Confidence 88 3444445222 33335555543 45688899986321 246788899999 6778
Q ss_pred ecCCCCCCHHHHHHHH
Q 036633 392 IDLAVPLLDTTRLLLR 407 (550)
Q Consensus 392 f~~~~pL~~e~i~~I~ 407 (550)
+. ..+.+.+.+|+
T Consensus 777 m~---~Pd~~~i~ei~ 789 (2695)
T 4akg_A 777 MK---SPQSGTIAEMI 789 (2695)
T ss_dssp CC---CCCHHHHHHHH
T ss_pred ee---CCCHHHHHHHH
Confidence 87 66777776664
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.75 E-value=1.9e-07 Score=95.13 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=105.8
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC----
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT---- 281 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~---- 281 (550)
..++|.+..++.+...+... ..++++||+|+|||++++.+++.. ..+.++|....
T Consensus 12 ~~~~gR~~el~~L~~~l~~~-------------~~v~i~G~~G~GKT~Ll~~~~~~~--------~~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY-------------PLTLLLGIRRVGKSSLLRAFLNER--------PGILIDCRELYAERG 70 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC-------------SEEEEECCTTSSHHHHHHHHHHHS--------SEEEEEHHHHHHTTT
T ss_pred HhcCChHHHHHHHHHHHhcC-------------CeEEEECCCcCCHHHHHHHHHHHc--------CcEEEEeeccccccc
Confidence 46899999999988877532 489999999999999999998764 25566664321
Q ss_pred --chh------------------------------------hhhhHHhHHHHHHHhCCCCeEEeccccccC-------HH
Q 036633 282 --ELE------------------------------------SIKHFFDSLAALVKKRPYSVVLFDKIEKAN-------SS 316 (550)
Q Consensus 282 --~~~------------------------------------~~s~liG~lt~al~~~p~~VlllDEIeka~-------~~ 316 (550)
... ....++..+.+........||+|||++.+. ++
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 150 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKE 150 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhh
Confidence 000 011111122222222223689999999965 46
Q ss_pred HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhc-cCCChhhhhhccceeEecCC
Q 036633 317 ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTG-SLFKPSLLKLLDKLVVIDLA 395 (550)
Q Consensus 317 v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~-~~f~p~ll~Rid~ii~f~~~ 395 (550)
+...|..+++.. .++.+|+|+.... .+ ...+. ......+.+|....+.+.
T Consensus 151 ~~~~L~~~~~~~--------------~~~~~il~g~~~~-~l------------~~~l~~~~~~~~l~~~~~~~i~l~-- 201 (350)
T 2qen_A 151 LLALFAYAYDSL--------------PNLKIILTGSEVG-LL------------HDFLKITDYESPLYGRIAGEVLVK-- 201 (350)
T ss_dssp HHHHHHHHHHHC--------------TTEEEEEEESSHH-HH------------HHHHCTTCTTSTTTTCCCEEEECC--
T ss_pred HHHHHHHHHHhc--------------CCeEEEEECCcHH-HH------------HHHHhhcCCCCccccCccceeeCC--
Confidence 777776666543 2344677654311 00 00000 112234666765688899
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633 396 VPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN 439 (550)
Q Consensus 396 ~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~ 439 (550)
||+.++...++...+. ..|. .+++++...+...
T Consensus 202 -pl~~~e~~~~l~~~~~-------~~~~---~~~~~~~~~i~~~ 234 (350)
T 2qen_A 202 -PFDKDTSVEFLKRGFR-------EVNL---DVPENEIEEAVEL 234 (350)
T ss_dssp -CCCHHHHHHHHHHHHH-------TTTC---CCCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHH-------HcCC---CCCHHHHHHHHHH
Confidence 9999999988776542 2344 5677777777653
No 95
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.74 E-value=3.7e-09 Score=107.60 Aligned_cols=105 Identities=18% Similarity=0.130 Sum_probs=62.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc-cCCCCCCceeEEecCCCCchhhhhhH---HhHHHHHHHhCCCCeEEecccccc-
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY-DNNDNDNHLIHFDMGNYTELESIKHF---FDSLAALVKKRPYSVVLFDKIEKA- 313 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~-~~~~~~~~li~id~s~~~~~~~~s~l---iG~lt~al~~~p~~VlllDEIeka- 313 (550)
.+++|+||||||||++|.+||..+. . ...+++.++++++......+.- ++.+...+.. ..||+|||++..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~---~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~lLiiDdig~~~ 227 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEK---KGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN--VPVLILDDIGAEQ 227 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH---SCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT--SSEEEEETCCC--
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHh---cCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCC
Confidence 6899999999999999999999987 6 4457777777654221100000 0111222333 359999999554
Q ss_pred -CHHHHH-HHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 314 -NSSILN-LLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 314 -~~~v~~-~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
++..++ +|..+++.. . . .+..+|+|||.....+..
T Consensus 228 ~~~~~~~~ll~~ll~~r--~--~--------~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 228 ATSWVRDEVLQVILQYR--M--L--------EELPTFFTSNYSFADLER 264 (308)
T ss_dssp ----CTTTTHHHHHHHH--H--H--------HTCCEEEEESSCHHHHHT
T ss_pred CCHHHHHHHHHHHHHHH--H--H--------CCCcEEEECCCCHHHHHH
Confidence 444444 333466543 1 0 122389999998776644
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.73 E-value=6.8e-09 Score=130.98 Aligned_cols=145 Identities=12% Similarity=0.216 Sum_probs=104.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHH--h--------CC-----CC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVK--K--------RP-----YS 303 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~--~--------~p-----~~ 303 (550)
.++||+||||||||.++......+ ...+++.+|+|..+....+ .|.+...+. . .| ..
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l-----~~~~~~~infS~~Tta~~l---~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAF-----PDFEVVSLNFSSATTPELL---LKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGC-----TTEEEEEECCCTTCCHHHH---HHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC-----CCCceEEEEeeCCCCHHHH---HHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 478999999999998765443333 2236899999998865443 343322110 1 12 13
Q ss_pred eEEeccccccCHH------HHHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhc
Q 036633 304 VVLFDKIEKANSS------ILNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTG 375 (550)
Q Consensus 304 VlllDEIeka~~~------v~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~ 375 (550)
|+|+||+....++ +...|.|++|.| . +.|. +..+...++.+|+|+|.+... . +
T Consensus 1377 VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~--g-~yd~~~~~~~~i~d~~~vaamnPp~~g--G--------------r 1437 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGTQRVITFIRQMVEKG--G-FWRTSDHTWIKLDKIQFVGACNPPTDA--G--------------R 1437 (3245)
T ss_dssp EEEETTTTCCCCCTTSCCHHHHHHHHHHHHS--E-EEETTTTEEEEESSEEEEEEECCTTST--T--------------C
T ss_pred EEEecccCCCCccccccccHHHHHHHHHHcC--C-eEECCCCeEEEecCeEEEEEcCCCCCC--C--------------C
Confidence 8999999887754 899999999988 5 5453 566677889999999975210 0 2
Q ss_pred cCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH
Q 036633 376 SLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET 414 (550)
Q Consensus 376 ~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~ 414 (550)
..++|.|++|+ .++.+. .++.+++..|...++..+
T Consensus 1438 ~~l~~Rf~r~F-~vi~i~---~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1438 VQLTHRFLRHA-PILLVD---FPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp CCCCHHHHTTC-CEEECC---CCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHhhc-eEEEeC---CCCHHHHHHHHHHHHHHH
Confidence 46789999999 688888 899999999988876543
No 97
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.62 E-value=4.6e-08 Score=92.83 Aligned_cols=121 Identities=15% Similarity=0.268 Sum_probs=68.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL 318 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~ 318 (550)
..++|+||||||||++|.+||+.+.+ .++.+.-+.- +. .+..+ ....+++|||++.+.....
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g------~i~~fans~s---~f---~l~~l------~~~kIiiLDEad~~~~~~~ 120 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG------AVISFVNSTS---HF---WLEPL------TDTKVAMLDDATTTCWTYF 120 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC------EECCCCCSSS---CG---GGGGG------TTCSSEEEEEECHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC------CeeeEEeccc---hh---hhccc------CCCCEEEEECCCchhHHHH
Confidence 57999999999999999999999976 3333221110 00 00001 1135999999985533332
Q ss_pred -HHHHHhhhhccccccc-cC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecC
Q 036633 319 -NLLLKILKTDFNRKAT-RG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDL 394 (550)
Q Consensus 319 -~~Ll~~ld~g~~~~l~-d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~ 394 (550)
..+..+++.. . +. |. ...+.....-+|+|||..... ...+ +.+.+|+ .++.|.-
T Consensus 121 d~~lrn~ldG~--~-~~iD~Khr~~~~~~~~PlIITtN~~~~~-----------------~~~~-~~L~SRi-~~f~F~~ 178 (212)
T 1tue_A 121 DTYMRNALDGN--P-ISIDRKHKPLIQLKCPPILLTTNIHPAK-----------------DNRW-PYLESRI-TVFEFPN 178 (212)
T ss_dssp HHHCHHHHHTC--C-EEEC----CCEEECCCCEEEEESSCTTS-----------------SSSC-HHHHTSC-EEEECCS
T ss_pred HHHHHHHhCCC--c-ccHHHhhcCccccCCCCEEEecCCCccc-----------------ccch-hhhhhhE-EEEEcCC
Confidence 3344444432 1 11 11 111111224689999986432 1223 5588999 6778874
Q ss_pred CCCCC
Q 036633 395 AVPLL 399 (550)
Q Consensus 395 ~~pL~ 399 (550)
+-|++
T Consensus 179 ~~p~~ 183 (212)
T 1tue_A 179 AFPFD 183 (212)
T ss_dssp CCCBC
T ss_pred CCCCC
Confidence 44554
No 98
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.61 E-value=5.8e-07 Score=91.65 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=97.4
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC-----
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY----- 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~----- 280 (550)
..++|.+..++.+.. +.. ..++++||+|+|||++++.+++.+.. ..+.+++..+
T Consensus 13 ~~~~gR~~el~~L~~-l~~--------------~~v~i~G~~G~GKT~L~~~~~~~~~~------~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA--------------PITLVLGLRRTGKSSIIKIGINELNL------PYIYLDLRKFEERNY 71 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS--------------SEEEEEESTTSSHHHHHHHHHHHHTC------CEEEEEGGGGTTCSC
T ss_pred HHhcChHHHHHHHHH-hcC--------------CcEEEECCCCCCHHHHHHHHHHhcCC------CEEEEEchhhccccC
Confidence 468999998888776 431 38999999999999999999988744 5678888754
Q ss_pred Cchhh-hh------------------------------------------hHHhHHHHHHHhC--CCCeEEeccccccC-
Q 036633 281 TELES-IK------------------------------------------HFFDSLAALVKKR--PYSVVLFDKIEKAN- 314 (550)
Q Consensus 281 ~~~~~-~s------------------------------------------~liG~lt~al~~~--p~~VlllDEIeka~- 314 (550)
..... .. ..+..+.+.+... ...||+|||++.+.
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 11100 00 0111233444432 13589999999975
Q ss_pred ---HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhc-cCCChhhhhhcccee
Q 036633 315 ---SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTG-SLFKPSLLKLLDKLV 390 (550)
Q Consensus 315 ---~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~-~~f~p~ll~Rid~ii 390 (550)
+++...|..+++.. .++.+|+|++... .+ ...+. ......+.+|....+
T Consensus 152 ~~~~~~~~~l~~~~~~~--------------~~~~~i~~g~~~~-~l------------~~~l~~~~~~~~l~~r~~~~i 204 (357)
T 2fna_A 152 LRGVNLLPALAYAYDNL--------------KRIKFIMSGSEMG-LL------------YDYLRVEDPESPLFGRAFSTV 204 (357)
T ss_dssp CTTCCCHHHHHHHHHHC--------------TTEEEEEEESSHH-HH------------HHHTTTTCTTSTTTTCCCEEE
T ss_pred cCchhHHHHHHHHHHcC--------------CCeEEEEEcCchH-HH------------HHHHhccCCCCccccCcccee
Confidence 35556565555543 2344677665311 01 00100 112234666765688
Q ss_pred EecCCCCCCHHHHHHHHHHHHH
Q 036633 391 VIDLAVPLLDTTRLLLREWACE 412 (550)
Q Consensus 391 ~f~~~~pL~~e~i~~I~~~~l~ 412 (550)
.+. ||+.++...++...+.
T Consensus 205 ~l~---~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 205 ELK---PFSREEAIEFLRRGFQ 223 (357)
T ss_dssp EEC---CCCHHHHHHHHHHHHH
T ss_pred ecC---CCCHHHHHHHHHHHHH
Confidence 999 9999999998887653
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.48 E-value=2e-06 Score=108.91 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=97.1
Q ss_pred EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHH
Q 036633 241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNL 320 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~ 320 (550)
-...||+|||||++++.+|+.++. +++.+||++-.+.....++ +.++... ++..+||||.+++++++..
T Consensus 607 g~~~GPaGtGKTet~k~La~~lgr------~~~vfnC~~~~d~~~~g~i---~~G~~~~--GaW~cfDEfNrl~~~vLSv 675 (3245)
T 3vkg_A 607 GNPFGPAGTGKTETVKALGSQLGR------FVLVFCCDEGFDLQAMSRI---FVGLCQC--GAWGCFDEFNRLEERILSA 675 (3245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTC------CEEEEECSSCCCHHHHHHH---HHHHHHH--TCEEEEETTTSSCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhCC------eEEEEeCCCCCCHHHHHHH---HhhHhhc--CcEEEehhhhcCCHHHHHH
Confidence 357899999999999999999988 9999999998776654433 3444433 4688999999999999999
Q ss_pred HHHhhh-------hccccccccC-CeEeecC-CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeE
Q 036633 321 LLKILK-------TDFNRKATRG-IAAFDLT-NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391 (550)
Q Consensus 321 Ll~~ld-------~g~~~~l~d~-g~~vd~~-~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~ 391 (550)
+.+.+. ++..+ +... |..+... ++.|++|.|.|... ...+++.+..|| ..|.
T Consensus 676 v~~qi~~I~~a~~~~~~~-~~~~~G~~i~l~~~~~vfiTmNpgY~g-----------------r~eLP~nLk~lF-r~v~ 736 (3245)
T 3vkg_A 676 VSQQIQTIQVALKENSKE-VELLGGKNISLHQDMGIFVTMNPGYAG-----------------RSNLPDNLKKLF-RSMA 736 (3245)
T ss_dssp HHHHHHHHHHHHHHTCSE-ECCC---CEECCTTCEEEECBCCCGGG-----------------CCCSCHHHHTTE-EEEE
T ss_pred HHHHHHHHHHHHHcCCCe-EEecCCCEEeecCCeEEEEEeCCCccC-----------------cccChHHHHhhc-EEEE
Confidence 888665 11113 4433 5555443 46788899987532 246788899999 7777
Q ss_pred ecCCCCCCHHHHHHHH
Q 036633 392 IDLAVPLLDTTRLLLR 407 (550)
Q Consensus 392 f~~~~pL~~e~i~~I~ 407 (550)
+. ..+.+.+.+|+
T Consensus 737 m~---~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 737 MI---KPDREMIAQVM 749 (3245)
T ss_dssp CC---SCCHHHHHHHH
T ss_pred Ee---CCCHHHHHHHH
Confidence 77 66776666664
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.39 E-value=1.9e-06 Score=85.23 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=76.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh--ccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCC-CeEEeccccccCH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL--YDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPY-SVVLFDKIEKANS 315 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l--~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~-~VlllDEIeka~~ 315 (550)
..++|+||||||||.+|.+||..+ ++ .++.+.... .. ...+. .+++.||.. +-.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l~G---------~vn~~~~~f--~l-----------~~~~~k~i~l~Ee~~-~~~ 161 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPFYG---------CVNWTNENF--PF-----------NDCVDKMVIWWEEGK-MTA 161 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCEE---------ECCTTCSSC--TT-----------GGGSSCSEEEECSCC-EET
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcccc---------eeecccccc--cc-----------ccccccEEEEecccc-chh
Confidence 689999999999999999999974 33 112221110 11 11122 355555554 445
Q ss_pred HHHHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633 316 SILNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID 393 (550)
Q Consensus 316 ~v~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~ 393 (550)
+.++.+-.+++.+..+ + |. ......+.+-+|+|||........ ++. ......+.|.+|+ .++.|.
T Consensus 162 d~~~~lr~i~~G~~~~-i-d~K~k~~~~v~~tPvIitsN~~i~~~~~--g~~--------~s~~~~~~L~sR~-~~f~F~ 228 (267)
T 1u0j_A 162 KVVESAKAILGGSKVR-V-DQKCKSSAQIDPTPVIVTSNTNMCAVID--GNS--------TTFEHQQPLQDRM-FKFELT 228 (267)
T ss_dssp TTHHHHHHHHTTCCEE-C-------CCEECCCCEEEEESSCTTCEEE--TTE--------EECTTHHHHHTTE-EEEECC
T ss_pred HHHHHHHHHhCCCcEE-E-ecCcCCcccccCCCEEEEecCCcccccc--cCc--------cchhhhHHHhhhE-EEEECC
Confidence 6667777778655222 2 22 334455778899999975322000 000 0012345688999 788886
Q ss_pred CCC-----CCCHHHHHHHHH
Q 036633 394 LAV-----PLLDTTRLLLRE 408 (550)
Q Consensus 394 ~~~-----pL~~e~i~~I~~ 408 (550)
-+. +++.++....+.
T Consensus 229 ~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 229 RRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp SCCCTTSCCCCHHHHHHHHH
T ss_pred CcCCcccCCCCHHHHHHHHH
Confidence 222 466777776665
No 101
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.22 E-value=6.5e-06 Score=76.67 Aligned_cols=82 Identities=22% Similarity=0.230 Sum_probs=51.4
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC----------------------------Cc----hhhhh
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY----------------------------TE----LESIK 287 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~----------------------------~~----~~~~s 287 (550)
.+.|+||+|+|||++++.|+..+.- .+.-++..+. .. .....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i------~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK------RAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGV 75 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG------GEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC------cCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCcccccccccc
Confidence 5789999999999999999988742 1111111000 00 00011
Q ss_pred hHHh------HHHHH-----HHhCCCCeEEeccc---cccCHHHHHHHHHhhhhc
Q 036633 288 HFFD------SLAAL-----VKKRPYSVVLFDKI---EKANSSILNLLLKILKTD 328 (550)
Q Consensus 288 ~liG------~lt~a-----l~~~p~~VlllDEI---eka~~~v~~~Ll~~ld~g 328 (550)
.+-| .+..+ +...| .+++|||+ ...++..+..+.++++++
T Consensus 76 ~lSgG~~qr~~la~aa~~~~l~~~p-~llilDEigp~~~ld~~~~~~l~~~l~~~ 129 (178)
T 1ye8_A 76 NVQYFEELAIPILERAYREAKKDRR-KVIIIDEIGKMELFSKKFRDLVRQIMHDP 129 (178)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTT-CEEEECCCSTTGGGCHHHHHHHHHHHTCT
T ss_pred CcCHHHHHHHHHHhhccccccccCC-CEEEEeCCCCcccCCHHHHHHHHHHHhcC
Confidence 1222 44553 56666 79999995 456788999999998765
No 102
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.99 E-value=1.6e-05 Score=80.55 Aligned_cols=71 Identities=18% Similarity=0.364 Sum_probs=44.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch--hhhhhHHhHHHHHHHhCCCCeEEeccccccCH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL--ESIKHFFDSLAALVKKRPYSVVLFDKIEKANS 315 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~--~~~s~liG~lt~al~~~p~~VlllDEIeka~~ 315 (550)
..++|+||||+|||++|..++.. .+ ..-.|+.+..++.... ......+..+.+.+.+.+ +|+||++..+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~G---~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-LG---GKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-HH---TTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-CC---CCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 56799999999999999999987 33 2224555522221110 112222334555666655 999999987744
No 103
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.99 E-value=5.9e-05 Score=79.86 Aligned_cols=84 Identities=10% Similarity=0.155 Sum_probs=54.3
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-----hhhHHh-----------------HHH
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-----IKHFFD-----------------SLA 294 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-----~s~liG-----------------~lt 294 (550)
+|.+++|+||+|+|||+++..||..+.. ......-+++..|..... .....| ...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~---~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al 175 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK---RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGV 175 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH
Confidence 4689999999999999999999998876 445666677666543210 000011 122
Q ss_pred HHHHhCCCCeEEeccccccC--HHHHHHHHH
Q 036633 295 ALVKKRPYSVVLFDKIEKAN--SSILNLLLK 323 (550)
Q Consensus 295 ~al~~~p~~VlllDEIeka~--~~v~~~Ll~ 323 (550)
+..+...+.+|++|.....+ ......+..
T Consensus 176 ~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~ 206 (443)
T 3dm5_A 176 DYFKSKGVDIIIVDTAGRHKEDKALIEEMKQ 206 (443)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHHH
T ss_pred HHHHhCCCCEEEEECCCcccchHHHHHHHHH
Confidence 23344567999999998776 334444433
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.97 E-value=6.1e-06 Score=77.25 Aligned_cols=85 Identities=16% Similarity=0.254 Sum_probs=48.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC---CCCchhhhhhHHh------------HHHHHHHhCCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG---NYTELESIKHFFD------------SLAALVKKRPYS 303 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s---~~~~~~~~s~liG------------~lt~al~~~p~~ 303 (550)
...+++||+|+|||+++..++..+.. ...+.+.+... .+......++ .| .+.+.+. .++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~---~g~~v~~~~~~~d~r~~~~~i~s~-~g~~~~~~~~~~~~~~~~~~~-~~~d 78 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL---GKKKVAVFKPKIDSRYHSTMIVSH-SGNGVEAHVIERPEEMRKYIE-EDTR 78 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH---TTCEEEEEEEC-----CCCEECC-----CEECEEESSGGGGGGGCC-TTEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeeccccccCcccEEec-CCCceeeEEECCHHHHHHHhc-CCCC
Confidence 37889999999999998665554433 11222222111 0100000000 11 1111111 2467
Q ss_pred eEEeccccccCHHHHHHHHHhhhhc
Q 036633 304 VVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 304 VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
+|+|||+..+++++++.|..+.+.|
T Consensus 79 vviIDE~Q~~~~~~~~~l~~l~~~~ 103 (184)
T 2orw_A 79 GVFIDEVQFFNPSLFEVVKDLLDRG 103 (184)
T ss_dssp EEEECCGGGSCTTHHHHHHHHHHTT
T ss_pred EEEEECcccCCHHHHHHHHHHHHCC
Confidence 9999999999999999888888877
No 105
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.97 E-value=4.4e-05 Score=73.55 Aligned_cols=138 Identities=18% Similarity=0.152 Sum_probs=80.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHH-------------------hHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFF-------------------DSLAALVKK 299 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~li-------------------G~lt~al~~ 299 (550)
..++|.|++|||||++|-.+|..+.. .....+.+++..-........+- +.+..++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~---~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~ 83 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLR---QGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA 83 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH---CCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhc
Confidence 68999999999999999999988866 33455556654321111111111 134444555
Q ss_pred CCCCeEEeccccccCH------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCC-hHHHHHhhhhhhHhhHHH
Q 036633 300 RPYSVVLFDKIEKANS------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLK-DEQVYEVMLTATYGRVNE 372 (550)
Q Consensus 300 ~p~~VlllDEIeka~~------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g-~~~~~~~~~~~~~~~~~~ 372 (550)
+| .++++||+...+. ..+..+...++.| . . ++.|+|.. .+.+++... ....-
T Consensus 84 ~p-dlvIVDElG~~~~~~~r~~~~~qDV~~~l~sg--i-----------d---VitT~Nlqh~esl~d~v~----~itg~ 142 (228)
T 2r8r_A 84 AP-SLVLVDELAHTNAPGSRHTKRWQDIQELLAAG--I-----------D---VYTTVNVQHLESLNDQVR----GITGV 142 (228)
T ss_dssp CC-SEEEESCTTCBCCTTCSSSBHHHHHHHHHHTT--C-----------E---EEEEEEGGGBGGGHHHHH----HHHSC
T ss_pred CC-CEEEEeCCCCCCcccchhHHHHHHHHHHHcCC--C-----------C---EEEEccccccccHHHHHH----HHcCC
Confidence 55 8999999986531 2344444466666 2 1 67888864 222222110 00011
Q ss_pred HhccCCChhhhhhccceeEecCCCCCCHHHHH
Q 036633 373 VTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRL 404 (550)
Q Consensus 373 ~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~ 404 (550)
.++...+..++.+.|+++..+ ++++++.
T Consensus 143 ~v~e~vpd~~~~~a~~v~lvD----~~p~~l~ 170 (228)
T 2r8r_A 143 QVRETLPDWVLQEAFDLVLID----LPPRELL 170 (228)
T ss_dssp CCCSCBCHHHHHTCSEEEEBC----CCHHHHH
T ss_pred CcCCcCccHHHhhCCeEEEec----CCHHHHH
Confidence 234566778889997765554 7787754
No 106
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.86 E-value=3e-05 Score=82.89 Aligned_cols=103 Identities=17% Similarity=0.320 Sum_probs=67.1
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCC-ceeEEecCCCCchhhhhh
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDN-HLIHFDMGNYTELESIKH 288 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~-~li~id~s~~~~~~~~s~ 288 (550)
+|.+|+..+...+... . +++++.||+|||||+++..++..+.. ... .++.+..+.- .......
T Consensus 29 ~Q~~av~~~~~~i~~~-----------~-~~~li~G~aGTGKT~ll~~~~~~l~~---~~~~~il~~a~T~~-Aa~~l~~ 92 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEK-----------K-HHVTINGPAGTGATTLTKFIIEALIS---TGETGIILAAPTHA-AKKILSK 92 (459)
T ss_dssp HHHHHHHHHHHHHHSS-----------S-CEEEEECCTTSCHHHHHHHHHHHHHH---TTCCCEEEEESSHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-----------C-CEEEEEeCCCCCHHHHHHHHHHHHHh---cCCceEEEecCcHH-HHHHHHh
Confidence 6888888888877654 1 48999999999999999999999876 222 2333221110 0000011
Q ss_pred HHh----HHHHHHH-------------------hCCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633 289 FFD----SLAALVK-------------------KRPYSVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 289 liG----~lt~al~-------------------~~p~~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
.+| .+-..+. ...+.+|++||+..+++..+..|++.+..+
T Consensus 93 ~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~ 155 (459)
T 3upu_A 93 LSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPW 155 (459)
T ss_dssp HHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTT
T ss_pred hhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhccCC
Confidence 111 1111111 124679999999999999999999988744
No 107
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.70 E-value=5.9e-05 Score=77.93 Aligned_cols=84 Identities=23% Similarity=0.421 Sum_probs=57.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEE-ecCCCCchhh------------hhhHHhHHHHHHHhCCCCe
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHF-DMGNYTELES------------IKHFFDSLAALVKKRPYSV 304 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~i-d~s~~~~~~~------------~s~liG~lt~al~~~p~~V 304 (550)
+.++++||+|+|||++.++++..+.. . ...++.+ |-.+|...+. ...+...+..+++..| .+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~---~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~P-dv 199 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNN---TKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDP-DI 199 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH---HCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCC-SE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccC---CCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCc-CE
Confidence 79999999999999999999988864 2 2233322 1112211100 0011115677778888 79
Q ss_pred EEeccccccCHHHHHHHHHhhhhc
Q 036633 305 VLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 305 lllDEIeka~~~v~~~Ll~~ld~g 328 (550)
|++||+- +++....+++....|
T Consensus 200 illDEp~--d~e~~~~~~~~~~~G 221 (356)
T 3jvv_A 200 ILVGEMR--DLETIRLALTAAETG 221 (356)
T ss_dssp EEESCCC--SHHHHHHHHHHHHTT
T ss_pred EecCCCC--CHHHHHHHHHHHhcC
Confidence 9999997 688888888888888
No 108
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.69 E-value=0.00015 Score=71.70 Aligned_cols=84 Identities=24% Similarity=0.442 Sum_probs=53.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEEecC-CCCchh------------hhhhHHhHHHHHHHhCCCCe
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHFDMG-NYTELE------------SIKHFFDSLAALVKKRPYSV 304 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~id~s-~~~~~~------------~~s~liG~lt~al~~~p~~V 304 (550)
..++++||+|+|||++.++|+..+.. . ...++...-. +|.... ....+-..+..+++..| .+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~---~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p-~i 101 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQ---TKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDP-DV 101 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHH---HCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCC-SE
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCC---CCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCC-CE
Confidence 78999999999999999999998754 2 2233222110 111000 00122236777888888 79
Q ss_pred EEeccccccCHHHHHHHHHhhhhc
Q 036633 305 VLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 305 lllDEIeka~~~v~~~Ll~~ld~g 328 (550)
+++||+- ++.....+++....|
T Consensus 102 lllDEp~--D~~~~~~~l~~~~~g 123 (261)
T 2eyu_A 102 IFVGEMR--DLETVETALRAAETG 123 (261)
T ss_dssp EEESCCC--SHHHHHHHHHHHHTT
T ss_pred EEeCCCC--CHHHHHHHHHHHccC
Confidence 9999997 666555556655555
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.67 E-value=8e-05 Score=71.81 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=54.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc-hhhhhhHHh------------HHHHHHHh----CC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE-LESIKHFFD------------SLAALVKK----RP 301 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~-~~~~s~liG------------~lt~al~~----~p 301 (550)
...+++||+|+|||+++..++..+.. .....+.+....-.. ...+..-+| .+.+.++. .+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 68889999999999999888877755 222343332111000 000111112 34444544 35
Q ss_pred CCeEEeccccccCHHHHHHHHHhhhhc
Q 036633 302 YSVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 302 ~~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
+.+|++||+.-+++++...+..+.+.|
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~~g 116 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAENG 116 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHHTT
T ss_pred CCEEEEecCccCcHHHHHHHHHHHhCC
Confidence 689999999999988877776666555
No 110
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.65 E-value=0.00025 Score=75.04 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=49.7
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-----hhhHHh--------------HHHHHH
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-----IKHFFD--------------SLAALV 297 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-----~s~liG--------------~lt~al 297 (550)
+|.+++|+||+|+|||+++..||..+.. ......-+++..|..... .....| .+..++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~---~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK---RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 4589999999999999999999998876 445666666665543210 011111 122333
Q ss_pred Hh---CCCCeEEeccccccC
Q 036633 298 KK---RPYSVVLFDKIEKAN 314 (550)
Q Consensus 298 ~~---~p~~VlllDEIeka~ 314 (550)
.. ..+.+|++|.....+
T Consensus 173 ~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHTTTTTCSEEEEEECCCSS
T ss_pred HHHHhcCCCEEEEECCCCcc
Confidence 33 357899999998755
No 111
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.62 E-value=7.6e-05 Score=70.69 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=67.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc--cCCCCC-CceeEEecCCCCchhh-----hh---hHH------hHHHHHH--Hh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY--DNNDND-NHLIHFDMGNYTELES-----IK---HFF------DSLAALV--KK 299 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~--~~~~~~-~~li~id~s~~~~~~~-----~s---~li------G~lt~al--~~ 299 (550)
...+++|+||+|||++|..++.... ...... .++...++.++...+. .. ..+ ..+.+.. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 5789999999999999988755432 100012 4665666655432221 00 000 1112211 22
Q ss_pred CCCCeEEeccccccCH---HHH--HHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHh
Q 036633 300 RPYSVVLFDKIEKANS---SIL--NLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVT 374 (550)
Q Consensus 300 ~p~~VlllDEIeka~~---~v~--~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l 374 (550)
..++||+|||++.+-+ +.. ..++..++.. + - +..-||++++..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~--r-~---------~~~~iil~tq~~-------------------- 133 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTH--R-H---------QGIDIFVLTQGP-------------------- 133 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGT--T-T---------TTCEEEEEESCG--------------------
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhc--C-c---------CCeEEEEECCCH--------------------
Confidence 3368999999998721 111 1244555544 3 0 112245555541
Q ss_pred ccCCChhhhhhccceeEec
Q 036633 375 GSLFKPSLLKLLDKLVVID 393 (550)
Q Consensus 375 ~~~f~p~ll~Rid~ii~f~ 393 (550)
..+...+..|++..+.|.
T Consensus 134 -~~l~~~lr~ri~~~~~l~ 151 (199)
T 2r2a_A 134 -KLLDQNLRTLVRKHYHIA 151 (199)
T ss_dssp -GGBCHHHHTTEEEEEEEE
T ss_pred -HHHhHHHHHHhheEEEEc
Confidence 356667999998888888
No 112
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.52 E-value=0.0011 Score=72.75 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=38.4
Q ss_pred cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHH
Q 036633 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
...+||.+..++.+...+... ...+..+.++||+|+|||++|..++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~---------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL---------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS---------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCeecccHHHHHHHHHHHhcc---------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 356999999999998888753 11336899999999999999999864
No 113
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.50 E-value=0.00093 Score=72.92 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=36.2
Q ss_pred cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHH
Q 036633 209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
+|.+..++.|...+... . ...+.++.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~---~-----~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---C-----DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---T-----TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc---c-----CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 59999999999988643 1 11337899999999999999999996
No 114
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.47 E-value=0.00018 Score=74.81 Aligned_cols=84 Identities=24% Similarity=0.442 Sum_probs=53.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEEecC-CCCchh------------hhhhHHhHHHHHHHhCCCCe
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHFDMG-NYTELE------------SIKHFFDSLAALVKKRPYSV 304 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~id~s-~~~~~~------------~~s~liG~lt~al~~~p~~V 304 (550)
..++++||+|+|||++.++|+..+.. . ...++.++-. ++.-.. ....+-+.+..+++..| .+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~---~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~p-d~ 212 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQ---TKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDP-DV 212 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHH---HSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCC-SE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCc---CCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCc-CE
Confidence 78999999999999999999998764 2 2344333311 110000 01122236677777777 79
Q ss_pred EEeccccccCHHHHHHHHHhhhhc
Q 036633 305 VLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 305 lllDEIeka~~~v~~~Ll~~ld~g 328 (550)
|++||+- +++....+++....|
T Consensus 213 illdE~~--d~e~~~~~l~~~~~g 234 (372)
T 2ewv_A 213 IFVGEMR--DLETVETALRAAETG 234 (372)
T ss_dssp EEESCCC--SHHHHHHHHHHHTTT
T ss_pred EEECCCC--CHHHHHHHHHHHhcC
Confidence 9999997 565555556666555
No 115
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.45 E-value=0.0013 Score=67.14 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=29.9
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG 278 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s 278 (550)
+|.++.|+||+|+|||++++.||..+.. ....+.-.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~---~~g~V~l~g~D 166 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN---HGFSVVIAASD 166 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---cCCEEEEEeec
Confidence 4489999999999999999999998865 44444444433
No 116
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.39 E-value=0.00021 Score=67.22 Aligned_cols=85 Identities=16% Similarity=0.285 Sum_probs=51.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe--c-CCCCchhhhhhHHh------------HHHHHHHhCCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD--M-GNYTELESIKHFFD------------SLAALVKKRPYS 303 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id--~-s~~~~~~~~s~liG------------~lt~al~~~p~~ 303 (550)
...+++||+|+|||+.+-.++..+.. ......-+. . ..|.+....+++ | .+.+.+. .++.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~~d~r~~~~~i~s~~-g~~~~a~~~~~~~~i~~~~~-~~~d 83 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPEIDNRYSKEDVVSHM-GEKEQAVAIKNSREILKYFE-EDTE 83 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC-------CEEECTT-SCEEECEEESSSTHHHHHCC-TTCS
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEeccCccchHHHHHhhc-CCceeeEeeCCHHHHHHHHh-ccCC
Confidence 58899999999999888777766644 222333332 1 112211111221 2 2222222 2578
Q ss_pred eEEeccccccCHHHHHHHHHhhhhc
Q 036633 304 VVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 304 VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
+|++||+.-++++....+..+.+.|
T Consensus 84 vViIDEaqfl~~~~v~~l~~l~~~~ 108 (191)
T 1xx6_A 84 VIAIDEVQFFDDEIVEIVNKIAESG 108 (191)
T ss_dssp EEEECSGGGSCTHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 9999999999988888777666665
No 117
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.37 E-value=0.0033 Score=63.41 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=32.5
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
.|.+++|+||+|+|||+++..||..+.. ....+.-+++..+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~---~g~kV~lv~~D~~r 144 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD---EGKSVVLAAADTFR 144 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEECTTC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh---cCCEEEEEcccccc
Confidence 3478999999999999999999998865 44456666665443
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.34 E-value=0.00081 Score=63.79 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=22.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++||||+|||++++.++..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5889999999999999999996654
No 119
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.32 E-value=0.00071 Score=66.13 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=32.3
Q ss_pred CcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 234 ~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
...+|..++|+||||+|||++|+.|++.+.. +.+.+|...+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~------~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG------NIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT------CCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC------CcEEEecHHH
Confidence 3345588999999999999999999998754 4566665554
No 120
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.27 E-value=0.0049 Score=65.17 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=54.3
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEEecCCCCchhhh-----hhHHh-----------------HH
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHFDMGNYTELESI-----KHFFD-----------------SL 293 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~id~s~~~~~~~~-----s~liG-----------------~l 293 (550)
.|.+++|+|++|+|||+++-.||..+.. . .....-+|+..+...... ..-.| ..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~---~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~ 175 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE---KHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAA 175 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH---TSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---hcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHH
Confidence 4588999999999999999999998876 4 557777888766532110 00001 12
Q ss_pred HHHHHhCCCCeEEeccccccCH--HHHHHHHH
Q 036633 294 AALVKKRPYSVVLFDKIEKANS--SILNLLLK 323 (550)
Q Consensus 294 t~al~~~p~~VlllDEIeka~~--~v~~~Ll~ 323 (550)
...++...|.+|++|=....+. ...+.|..
T Consensus 176 l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~ 207 (433)
T 2xxa_A 176 LKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQ 207 (433)
T ss_dssp HHHHHHTTCSEEEEECCCCCTTCHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEECCCcccccHHHHHHHHH
Confidence 2233445788999998766553 44444433
No 121
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.26 E-value=0.00021 Score=65.43 Aligned_cols=34 Identities=15% Similarity=0.440 Sum_probs=28.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG 278 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s 278 (550)
..++++||||+|||++|+.|++.+.. +++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~------~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE------PWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS------CEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC------CeEEeccc
Confidence 47899999999999999999999865 67776643
No 122
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.26 E-value=0.00074 Score=81.96 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=50.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-------hhhHHh-----------HHHHHHHhC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-------IKHFFD-----------SLAALVKKR 300 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-------~s~liG-----------~lt~al~~~ 300 (550)
.+++++||||||||.+|++++..... ...+-+.++..+..+... .++|++ .+....++.
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~---~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~ 1159 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1159 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhh---cCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhc
Confidence 67999999999999999999987765 455777777766442222 122222 222234566
Q ss_pred CCCeEEeccccccCH
Q 036633 301 PYSVVLFDKIEKANS 315 (550)
Q Consensus 301 p~~VlllDEIeka~~ 315 (550)
..++|++|+++.+-|
T Consensus 1160 ~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1160 AVDVIVVDSVAALTP 1174 (1706)
T ss_dssp CCSEEEESCGGGCCC
T ss_pred CCeEEEeCchHhcCc
Confidence 679999999875433
No 123
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.24 E-value=0.0007 Score=83.16 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=47.7
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-------------------HHHHHHH
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-------------------SLAALVK 298 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-------------------~lt~al~ 298 (550)
+.+++|+||||||||+||.+++..... .......+++.+...... .+-.| .+...++
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~~~~l~-a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-HHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccccCHHH-HHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 379999999999999999999887655 344566677665433222 11112 2223445
Q ss_pred hCCCCeEEeccccc
Q 036633 299 KRPYSVVLFDKIEK 312 (550)
Q Consensus 299 ~~p~~VlllDEIek 312 (550)
+...++|+||++.-
T Consensus 1503 ~~~~~lVVIDsi~a 1516 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAA 1516 (2050)
T ss_dssp HTCCSEEEESCGGG
T ss_pred cCCCCEEEEcChhH
Confidence 55668999999963
No 124
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.23 E-value=0.0022 Score=67.66 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=33.4
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
.|.+++|+||+|+|||+++..||..+.. ....+.-+++.-+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~---~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEeeccccC
Confidence 4478889999999999999999999876 45566667765443
No 125
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.21 E-value=0.0016 Score=61.20 Aligned_cols=103 Identities=12% Similarity=0.135 Sum_probs=60.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec----CCCCchhhhhhH-------------------------
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM----GNYTELESIKHF------------------------- 289 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~----s~~~~~~~~s~l------------------------- 289 (550)
+.+++++++|+|||++|-.+|-..-+. ..+...+.+ ..+.+...+..|
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~---G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH---GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT---TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 789999999999999999988777663 223333311 111122222222
Q ss_pred Hh---HHHHHHHhCCCCeEEeccccc------cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633 290 FD---SLAALVKKRPYSVVLFDKIEK------ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360 (550)
Q Consensus 290 iG---~lt~al~~~p~~VlllDEIek------a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~ 360 (550)
.. ...+.+....|.+|+|||+-- ++.+ .+++++.+. . .+.-+|+|+|.....+.+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~R--p-----------~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLE---EVISALNAR--P-----------GHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHTS--C-----------TTCEEEEECSSCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHH---HHHHHHHhC--c-----------CCCEEEEECCCCcHHHHH
Confidence 01 223333446689999999943 3433 345555544 2 344589999976554443
No 126
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.19 E-value=0.0026 Score=64.56 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=32.9
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
|.+++|+||+|+|||+++..||..+.. ....+.-+|+.-+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~---~g~kVllid~D~~ 144 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAE---LGYKVLIAAADTF 144 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCc
Confidence 489999999999999999999998876 4556777776654
No 127
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.17 E-value=0.00051 Score=68.71 Aligned_cols=38 Identities=32% Similarity=0.366 Sum_probs=30.2
Q ss_pred cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633 235 RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG 278 (550)
Q Consensus 235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s 278 (550)
..+|..++|+||||+|||++|+.|++.+.. ..+.+++.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~------~~~~Is~D 67 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQG------NVIVIDND 67 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTT------CCEEECTH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC------CeEEEech
Confidence 345678999999999999999999998744 45666653
No 128
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.16 E-value=0.00068 Score=68.90 Aligned_cols=96 Identities=10% Similarity=0.098 Sum_probs=60.6
Q ss_pred HHHhhhhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcC
Q 036633 157 ARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRR 236 (550)
Q Consensus 157 ~~~~~~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~ 236 (550)
+++..+.+....++.++|.+++. |+.+ +.+ -++|...+...+...+... ....
T Consensus 38 ~~~~~~~~~~~~~~~~~v~~~y~-----pl~r--------ll~-------~~~~~~~~l~~~~~~~l~~-------~~~~ 90 (321)
T 3tqc_A 38 SDLDKLQGQIEIVSLKEVTEIYL-----PLSR--------LLS-------FYVTARQTLQQATYQFLGK-------PEPK 90 (321)
T ss_dssp HHHHHTTTTHHHHCHHHHHHTHH-----HHHH--------HHH-------HHHHHHHHHHHHHHHHHTC-------CCCC
T ss_pred HHHHHhhCCCCCcCHHHHHHHHH-----HHHH--------HHH-------HhhcchHHHHHHHHHHhcc-------CCCC
Confidence 44555555566677777777766 3222 111 2356667777666666654 2344
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
+|..+.+.||+|+|||++++.|+..+.... .......+.+..|
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~-~~~~v~~i~~D~f 133 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWP-DHPNVEVITTDGF 133 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTST-TCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccC-CCCeEEEEeeccc
Confidence 568899999999999999999999875200 1223444555544
No 129
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.16 E-value=0.00061 Score=61.43 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=45.9
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh------------h-hH---Hh------HHHHHH
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI------------K-HF---FD------SLAALV 297 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~------------s-~l---iG------~lt~al 297 (550)
.++|+||||+|||++|+.| +.+.. ..++++++...... . .+ .| ...+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 73 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGA--------KVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEEL 73 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTC--------EEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCC--------cEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 6889999999999999999 65533 34554433221110 0 00 11 223333
Q ss_pred HhCCCCeEEeccccccCHHHHHHHHHhhh
Q 036633 298 KKRPYSVVLFDKIEKANSSILNLLLKILK 326 (550)
Q Consensus 298 ~~~p~~VlllDEIeka~~~v~~~Ll~~ld 326 (550)
...+..++++|-+ .++.....|.+.+.
T Consensus 74 ~~~~~~~vi~dg~--~~~~~~~~l~~~~~ 100 (179)
T 3lw7_A 74 GTSNHDLVVFDGV--RSLAEVEEFKRLLG 100 (179)
T ss_dssp CSCCCSCEEEECC--CCHHHHHHHHHHHC
T ss_pred HhcCCCeEEEeCC--CCHHHHHHHHHHhC
Confidence 3355678899987 67777777766654
No 130
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.15 E-value=0.0018 Score=66.64 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=48.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-------------------HHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-------------------SLAALVKK 299 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-------------------~lt~al~~ 299 (550)
..++++||||+|||++|..++..+.. ...+.+.++..+-.... ...-+| .+...++.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-YAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 68899999999999999999988755 44467777765533221 111122 22223344
Q ss_pred CCCCeEEeccccccCH
Q 036633 300 RPYSVVLFDKIEKANS 315 (550)
Q Consensus 300 ~p~~VlllDEIeka~~ 315 (550)
....+|++|.+..+.+
T Consensus 138 ~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVP 153 (356)
T ss_dssp SCCSEEEEECTTTCCC
T ss_pred cCCCeEEehHhhhhcC
Confidence 5568999999877654
No 131
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.15 E-value=0.0061 Score=72.21 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=46.0
Q ss_pred CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHh---ccCCCCCCceeEEecCCC
Q 036633 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANEL---YDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l---~~~~~~~~~li~id~s~~ 280 (550)
..++|.+..++.|...+... ...+..+.++|+.|+|||+||+.++... .. .-....+.++++..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~---------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~--~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL---------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEG--CFSGGVHWVSIGKQ 190 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT---------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTT--TSTTCEEEEECCSC
T ss_pred ceeccHHHHHHHHHHHHhhc---------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHh--hCCCeEEEEEECCc
Confidence 56999999999999988644 1234788999999999999999887642 11 01124456777664
No 132
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.11 E-value=0.0017 Score=65.15 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=32.6
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
|.+++++||+|+|||+++..||..+.. ......-+|+..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~---~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK---KGFKVGLVGADVYR 138 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH---TTCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEecCCCC
Confidence 578889999999999999999988865 44466667766543
No 133
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.10 E-value=0.00044 Score=75.99 Aligned_cols=86 Identities=15% Similarity=0.222 Sum_probs=53.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh----HHHHHH------------HhCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD----SLAALV------------KKRPY 302 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG----~lt~al------------~~~p~ 302 (550)
..+++.||||||||+++..++..+.. ...+++-.-.+ -.........+| .+-..+ ...++
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~---~g~~Vl~~ApT-~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~ 280 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAES---LGLEVGLCAPT-GKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPY 280 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESS-HHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEecCc-HHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccC
Confidence 48999999999999999999988765 33333322111 000000111111 111111 11246
Q ss_pred CeEEeccccccCHHHHHHHHHhhhhc
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
.+|++||+..++...+..|++.+..|
T Consensus 281 dvlIIDEasml~~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 281 DLLIVDEVSMMGDALMLSLLAAVPPG 306 (574)
T ss_dssp SEEEECCGGGCCHHHHHHHHTTSCTT
T ss_pred CEEEEcCccCCCHHHHHHHHHhCcCC
Confidence 89999999999999999998887655
No 134
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.09 E-value=0.00031 Score=65.82 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=26.3
Q ss_pred CCCcCCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 232 LSSRRQLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 232 l~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
...+.+|..++|.||||+|||++|+.|++.+..
T Consensus 14 ~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 14 LVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp --CCCSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334445578999999999999999999998744
No 135
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.08 E-value=0.0028 Score=60.03 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=22.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.++||||+|||++++.|+..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 688999999999999999999754
No 136
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.07 E-value=0.0005 Score=65.61 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=50.6
Q ss_pred CCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC---CCCchhhhhhHHh---------HHHHHHH--hC
Q 036633 236 RQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG---NYTELESIKHFFD---------SLAALVK--KR 300 (550)
Q Consensus 236 ~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s---~~~~~~~~s~liG---------~lt~al~--~~ 300 (550)
..+ ...+++||.|+|||+.+-.++..+.. .....+-+... .|.+....+++ | ...+... ..
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~---~g~kVli~k~~~d~R~ge~~i~s~~-g~~~~a~~~~~~~~~~~~~~~ 100 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQF---AKQHAIVFKPCIDNRYSEEDVVSHN-GLKVKAVPVSASKDIFKHITE 100 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEECC------------------CCEEECSSGGGGGGGCCS
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEeccCCcchHHHHHhhc-CCeeEEeecCCHHHHHHHHhc
Confidence 345 56679999999999888777766654 33344444321 12222222222 3 1111111 12
Q ss_pred CCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633 301 PYSVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 301 p~~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
++.+|++||+.-++++..+.+..+.+.|
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~~~ 128 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLANRG 128 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHHTT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhhCC
Confidence 5789999999999988887776666666
No 137
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.00 E-value=0.00036 Score=64.30 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=23.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..++|+||||+|||++|+.||+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999999855
No 138
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.97 E-value=0.0019 Score=62.51 Aligned_cols=24 Identities=38% Similarity=0.279 Sum_probs=21.0
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
.++++||+|+|||.+|..++..+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcC
Confidence 589999999999999998887763
No 139
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.95 E-value=0.0024 Score=58.61 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.9
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
.|..++|.|+||+|||++|+.|++.+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346889999999999999999999874
No 140
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.94 E-value=0.0026 Score=64.13 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=22.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|+++|+..+.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHHcCCC
Confidence 6889999999999999999998764
No 141
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.94 E-value=0.0024 Score=64.30 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=24.9
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.|..++++||||+|||++|..||+.+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~ 36 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPV 36 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCC
Confidence 4568899999999999999999999865
No 142
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.92 E-value=0.0016 Score=61.15 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 213 DAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 213 ~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
..++.++..+... .+.++..+.++||+|+|||++++.|+..+.. ...+++.+++..+
T Consensus 5 ~~~~~l~~~~~~~--------~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~---~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 5 DRIDFLCKTILAI--------KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE---QGISVCVFHMDDH 61 (201)
T ss_dssp HHHHHHHHHHHTS--------CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEEGGGG
T ss_pred HHHHHHHHHHHHh--------ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh---cCCeEEEeccCcc
Confidence 3455666666543 1234478999999999999999999998754 2335666655444
No 143
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.92 E-value=0.00059 Score=61.71 Aligned_cols=25 Identities=32% Similarity=0.635 Sum_probs=22.7
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++|.||||+|||++|+.|++.+.-
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999998844
No 144
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.91 E-value=0.0091 Score=62.74 Aligned_cols=146 Identities=13% Similarity=0.075 Sum_probs=75.0
Q ss_pred CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCH
Q 036633 236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANS 315 (550)
Q Consensus 236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~ 315 (550)
.+|..++++||||+|||++|+.|++.+ .+..++...+.. ...+...+...+.. . ..+++|-... ..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~--------~~~~i~~D~~~~---~~~~~~~~~~~l~~-g-~~vIiD~~~~-~~ 321 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA--------GYVHVNRDTLGS---WQRCVSSCQAALRQ-G-KRVVIDNTNP-DV 321 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG--------TCEECCGGGSCS---HHHHHHHHHHHHHT-T-CCEEEESCCC-SH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc--------CcEEEccchHHH---HHHHHHHHHHHHhc-C-CcEEEeCCCC-CH
Confidence 345788999999999999999999876 345566555531 22222233334443 3 2456776542 34
Q ss_pred HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhh---------hhHhhHHHHhccCC-Chhhhhh
Q 036633 316 SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLT---------ATYGRVNEVTGSLF-KPSLLKL 385 (550)
Q Consensus 316 ~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~---------~~~~~~~~~l~~~f-~p~ll~R 385 (550)
.....+.+++... - . .-.+|.+.+ ..+.+...... .....+...+...| .|..-..
T Consensus 322 ~~r~~~~~~~~~~--~-~---------~~~~v~l~~--~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~~E~ 387 (416)
T 3zvl_A 322 PSRARYIQCAKDA--G-V---------PCRCFNFCA--TIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEG 387 (416)
T ss_dssp HHHHHHHHHHHHH--T-C---------CEEEEEECC--CHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCGGGT
T ss_pred HHHHHHHHHHHHc--C-C---------eEEEEEEeC--CHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCcccC
Confidence 4445555555432 1 1 112344433 33333322110 01122333333344 5555667
Q ss_pred ccceeEecCCCC-CCHHHHHHHHHH
Q 036633 386 LDKLVVIDLAVP-LLDTTRLLLREW 409 (550)
Q Consensus 386 id~ii~f~~~~p-L~~e~i~~I~~~ 409 (550)
+|.++..+..+. +..++-..+...
T Consensus 388 fd~v~~v~~~~~~f~~~~~~~l~~~ 412 (416)
T 3zvl_A 388 FLEILEIPFRLQEHLDPALQRLYRQ 412 (416)
T ss_dssp CSEEEEECCCCCTTCCHHHHHHHTS
T ss_pred CcEEEEEecccccccCHHHHHHHHH
Confidence 776665553332 666666666544
No 145
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.90 E-value=0.00058 Score=63.11 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.6
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+|..++|.|+||+|||++|+.|++.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4468899999999999999999998743
No 146
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.90 E-value=0.0096 Score=59.60 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=31.5
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
++.++.++||+|+|||+++..||..+.. ....+.-+|+.-+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~---~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH---TTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEecCCcc
Confidence 3478888999999999999999998865 4445666665433
No 147
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.89 E-value=0.0012 Score=67.31 Aligned_cols=81 Identities=16% Similarity=0.304 Sum_probs=52.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC-CCCch---hhhhhHH--h------HHHHHHHhCCCCeEE
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG-NYTEL---ESIKHFF--D------SLAALVKKRPYSVVL 306 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s-~~~~~---~~~s~li--G------~lt~al~~~p~~Vll 306 (550)
..++++||+|+|||++.++|+..+.. . ...+.++-. ++.-. ..++ ++ | .+..+++..| .+++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~---~-~g~i~i~~~~e~~~~~~~~~i~-~~~ggg~~~r~~la~aL~~~p-~ili 245 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK---E-ERIISIEDTEEIVFKHHKNYTQ-LFFGGNITSADCLKSCLRMRP-DRII 245 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT---T-SCEEEEESSCCCCCSSCSSEEE-EECBTTBCHHHHHHHHTTSCC-SEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC---C-CcEEEECCeeccccccchhEEE-EEeCCChhHHHHHHHHhhhCC-CEEE
Confidence 58999999999999999999988754 3 244555422 22111 1111 22 2 5667777777 7999
Q ss_pred eccccccCHHHHHHHHHhhhhc
Q 036633 307 FDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 307 lDEIeka~~~v~~~Ll~~ld~g 328 (550)
+||+-. ..+++. ++.+..|
T Consensus 246 ldE~~~--~e~~~~-l~~~~~g 264 (330)
T 2pt7_A 246 LGELRS--SEAYDF-YNVLCSG 264 (330)
T ss_dssp ECCCCS--THHHHH-HHHHHTT
T ss_pred EcCCCh--HHHHHH-HHHHhcC
Confidence 999875 456554 4445455
No 148
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.88 E-value=0.00054 Score=64.22 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=23.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..++|+||||+|||++|+.||+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 58999999999999999999999854
No 149
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.88 E-value=0.0039 Score=58.63 Aligned_cols=35 Identities=29% Similarity=0.293 Sum_probs=27.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
..++++||||+|||++++.++. . ...+.+.++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCC
Confidence 6889999999999999999998 2 233667777654
No 150
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.83 E-value=0.00082 Score=61.29 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=27.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
..++|+||||+|||++++.|+..+. .+.+|...+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g--------~~~i~~d~~~ 43 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH--------AAFLDGDFLH 43 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT--------CEEEEGGGGC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC--------cEEEeCcccc
Confidence 6889999999999999999998873 3456655443
No 151
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.83 E-value=0.00059 Score=62.86 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=27.5
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM 277 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~ 277 (550)
.++|.||||+|||++|+.|++.+.. ...++..+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~---~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN---QGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT---TTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh---cCceEEEEEC
Confidence 5789999999999999999999864 2234555553
No 152
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.81 E-value=0.00066 Score=62.50 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=23.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..++|.||||+|||++|+.|++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998864
No 153
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.80 E-value=0.011 Score=63.19 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=24.9
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
++.+++|+||+|+|||++++.|+..+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 3478999999999999999999998765
No 154
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.80 E-value=0.00072 Score=62.07 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=23.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..++|+||||+|||++|+.|++.+..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999998844
No 155
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.80 E-value=0.003 Score=66.87 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=30.6
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
.|.+++|+||+|||||+++..||..+.. ......-+++..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~---~G~kVllv~~D~~ 138 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQK---RGLKPALIAADTY 138 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHH---HHCCEEEECCSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEecccc
Confidence 3579999999999999999999988754 2234555555443
No 156
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.79 E-value=0.0041 Score=59.69 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
..+.++||+|+|||++++.|+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 6889999999999999999984
No 157
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.78 E-value=0.0011 Score=67.92 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=35.5
Q ss_pred cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
++.+..++.+...+... +. ++...+++|+||+|+|||+++++||..+..
T Consensus 2 ~~~~~L~~~il~~l~~~------i~-~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNR------IE-DNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CCHHHHHHHHHHHHHHT------TT-TCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH------hc-cCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44566666666666543 11 222257899999999999999999999865
No 158
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.77 E-value=0.00075 Score=64.70 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=29.1
Q ss_pred CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
.+|.+++|.||||+||+|.|+.|++.+ .+..+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~--------g~~hIstGd 62 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF--------HFNHLSSGD 62 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH--------CCEEECHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH--------CCceEcHHH
Confidence 355788899999999999999999987 356666544
No 159
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.77 E-value=0.00083 Score=65.77 Aligned_cols=25 Identities=48% Similarity=0.684 Sum_probs=22.8
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++++||||+|||++|+.||+.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 5789999999999999999998855
No 160
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.77 E-value=0.0008 Score=62.27 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=23.2
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHh
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
++..++|+|+||+|||++++.|++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAEL 34 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 33689999999999999999999984
No 161
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.74 E-value=0.00086 Score=61.98 Aligned_cols=33 Identities=33% Similarity=0.462 Sum_probs=26.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM 277 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~ 277 (550)
..+.++||||+|||++++.|+..+.. ..+.+|.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~------g~i~i~~ 42 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGV------PKVHFHS 42 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSS------CEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCC------CeEEEcc
Confidence 68999999999999999999986432 4566653
No 162
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.74 E-value=0.0049 Score=60.09 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|.++|+..+.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5788999999999999999998764
No 163
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.73 E-value=0.00069 Score=61.95 Aligned_cols=25 Identities=40% Similarity=0.468 Sum_probs=22.7
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++|.||||+|||++|+.||+.+.-
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5889999999999999999998844
No 164
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.71 E-value=0.003 Score=64.93 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=46.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------------HHHHH-HHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------------SLAAL-VKK 299 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------------~lt~a-l~~ 299 (550)
..++++||||+|||++|..++..+.. ...+.+.++...-.+.. ...-+| .+... ++.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 58899999999999999999877654 34466677765432221 111122 12222 234
Q ss_pred CCCCeEEeccccccC
Q 036633 300 RPYSVVLFDKIEKAN 314 (550)
Q Consensus 300 ~p~~VlllDEIeka~ 314 (550)
....+|++|++..+.
T Consensus 138 ~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 138 GALDIIVIDSVAALV 152 (349)
T ss_dssp TCCSEEEEECGGGCC
T ss_pred CCCCEEEEcChHhhc
Confidence 445899999998775
No 165
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.69 E-value=0.0009 Score=61.71 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=23.8
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
|..++|.|+||+|||++|+.|++.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467899999999999999999998743
No 166
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.69 E-value=0.001 Score=62.26 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.6
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
|..++|+||||+|||++|+.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999873
No 167
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.68 E-value=0.0039 Score=59.62 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=29.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccC---CCCCCceeEEecCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDN---NDNDNHLIHFDMGN 279 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~---~~~~~~li~id~s~ 279 (550)
..++|+||||+|||++++.++...... +......+.++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 689999999999999999999852110 00134667777655
No 168
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.68 E-value=0.00096 Score=61.78 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=24.4
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+|..++|.||||+|||++|+.|++.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468999999999999999999998743
No 169
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.68 E-value=0.0008 Score=61.13 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.|+||||+|||++++.||..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999999873
No 170
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.67 E-value=0.0037 Score=58.61 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=53.0
Q ss_pred eeEEEeccCCCcHH-HHHHHHHHHhccCCCCCCceeEEecC---CCCchhhhhhHHh------------HHHHHHHhCCC
Q 036633 239 GLFLFAGPNCSGKA-ELAKAIANELYDNNDNDNHLIHFDMG---NYTELESIKHFFD------------SLAALVKKRPY 302 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT-~lAk~la~~l~~~~~~~~~li~id~s---~~~~~~~~s~liG------------~lt~al~~~p~ 302 (550)
...+++||.|+||| +|.+++.++... . ...+.+.-+ .|. ..-++++ | .+.+.. .+.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~-~kvl~~kp~~D~R~~-~~i~S~~-g~~~~A~~~~~~~d~~~~~--~~~ 92 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIA---Q-YKCLVIKYAKDTRYS-SSFCTHD-RNTMEALPACLLRDVAQEA--LGV 92 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHT---T-CCEEEEEETTCCCGG-GSCCHHH-HHHSEEEEESSGGGGHHHH--HTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHc---C-CeEEEEccccCccch-hhhhhcc-CCcccceecCCHHHHHHhc--cCC
Confidence 56788999999999 899999988765 3 345555433 333 1122222 3 233322 246
Q ss_pred CeEEeccccccCHHHHHHHHHhhhhc
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
.||++||+.-+ +++...+..+.+.|
T Consensus 93 DvIlIDEaQFf-k~~ve~~~~L~~~g 117 (195)
T 1w4r_A 93 AVIGIDEGQFF-PDIVEFCEAMANAG 117 (195)
T ss_dssp SEEEESSGGGC-TTHHHHHHHHHHTT
T ss_pred CEEEEEchhhh-HHHHHHHHHHHHCC
Confidence 89999999999 77666665555656
No 171
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.67 E-value=0.00097 Score=60.45 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=24.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.+++|.|++|+|||++|+.||+.+.-
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999999855
No 172
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.66 E-value=0.00077 Score=61.75 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=20.4
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+|..++|.|+||+|||++|+.|++.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4568899999999999999999998755
No 173
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.66 E-value=0.025 Score=61.47 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=50.7
Q ss_pred CCCeEEecccccc----CHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc
Q 036633 301 PYSVVLFDKIEKA----NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS 376 (550)
Q Consensus 301 p~~VlllDEIeka----~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~ 376 (550)
|+-||++||+..+ +.++...|.++...| +.+ .+.+|++|...+ ..
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~G--Ra~----------GIhLIlaTQRPs-------------------~d 391 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKA--RAA----------GIHLILATQRPS-------------------VD 391 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHC--TTT----------TEEEEEEESCCC-------------------TT
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHH--hhC----------CeEEEEEecCcc-------------------cc
Confidence 3458999999855 567888899999998 611 233555554432 12
Q ss_pred CCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633 377 LFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE 408 (550)
Q Consensus 377 ~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~ 408 (550)
.++..+.+.|...|.|. .-+..+...|+.
T Consensus 392 ~I~~~Iran~~~RI~lr---v~s~~Dsr~ILd 420 (574)
T 2iut_A 392 VITGLIKANIPTRIAFQ---VSSKIDSRTILD 420 (574)
T ss_dssp TSCHHHHHTCCEEEEEC---CSCHHHHHHHHS
T ss_pred cccHHHHhhhccEEEEE---cCCHHHHHHhcC
Confidence 45666777787788888 777777776654
No 174
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.65 E-value=0.0046 Score=63.68 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=47.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh------------------hhHHhHHHHHHHhC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI------------------KHFFDSLAALVKKR 300 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~------------------s~liG~lt~al~~~ 300 (550)
..++++||||+|||++|..++..+.. ...+.+.++..+-.+.... ..+...+...++..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~ 140 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 140 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhcc
Confidence 58899999999999999999887654 3446777777543222110 01111122233455
Q ss_pred CCCeEEeccccccC
Q 036633 301 PYSVVLFDKIEKAN 314 (550)
Q Consensus 301 p~~VlllDEIeka~ 314 (550)
...+|++|.+..+.
T Consensus 141 ~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 141 AVDVIVVDSVAALT 154 (356)
T ss_dssp CCSEEEEECGGGCC
T ss_pred CCCEEEEcCHHHhc
Confidence 67899999998765
No 175
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.64 E-value=0.00089 Score=61.59 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.9
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++|+|+||+|||++|+.|++.+.-
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC
Confidence 6889999999999999999998854
No 176
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.63 E-value=0.0011 Score=61.96 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=24.4
Q ss_pred cCCCeeEEEeccCCCcHHHHHHHHHHHh
Q 036633 235 RRQLGLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
+.+|..++|.||||+|||++|+.|++.+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3445788999999999999999999886
No 177
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.61 E-value=0.0011 Score=63.08 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=24.0
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
|..++|.||||+|||++|+.||+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 368899999999999999999998743
No 178
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.60 E-value=0.0094 Score=59.91 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.6
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
|.++.|+||+|+|||++++.||..+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999998865
No 179
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.57 E-value=0.0021 Score=62.41 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=24.0
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHh
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
+|..++|.||||+|||++|+.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999887
No 180
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.57 E-value=0.0011 Score=67.70 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=28.2
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
+..++++||||||||++|..||+.+.+ .+|..|
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~------eiIs~D 72 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPL------EVINSD 72 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCE------EEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCC------cEEccc
Confidence 358999999999999999999999866 666555
No 181
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.57 E-value=0.0023 Score=59.03 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=28.7
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
+..++|.|+||+|||++++.|+..+.. ...++..+|
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~---~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK---EGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEee
Confidence 368899999999999999999999865 333455555
No 182
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.55 E-value=0.0011 Score=62.98 Aligned_cols=33 Identities=33% Similarity=0.653 Sum_probs=27.6
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
.++|.||||+||+|.|+.||+.+ .+.+++++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~--------g~~~istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK--------GFVHISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--------CCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--------CCeEEcHHHH
Confidence 57899999999999999999987 4667776544
No 183
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.55 E-value=0.0016 Score=66.07 Aligned_cols=32 Identities=38% Similarity=0.588 Sum_probs=27.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
..++++||||+|||++|+.||+.+.. .++..|
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~------~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPC------ELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCE------EEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC------cEEecc
Confidence 57899999999999999999999865 566555
No 184
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.55 E-value=0.0021 Score=60.20 Aligned_cols=27 Identities=33% Similarity=0.403 Sum_probs=24.3
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+..+.|.||||+|||++++.|+..+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~ 51 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQ 51 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 378899999999999999999999854
No 185
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.54 E-value=0.0013 Score=59.78 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..++|.||||+|||++|+.|++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh
Confidence 47899999999999999999983
No 186
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.52 E-value=0.0012 Score=59.93 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.8
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++|.|+||+|||++|+.|++.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6889999999999999999998844
No 187
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.50 E-value=0.0024 Score=60.20 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=23.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||||+|||++++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7889999999999999999999986
No 188
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.50 E-value=0.0012 Score=60.82 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=22.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++|.||||+|||++|+.|++.+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999999873
No 189
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.50 E-value=0.0013 Score=63.01 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.5
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
+|..++|.||||+|||++|+.|++.+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999999873
No 190
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.48 E-value=0.0011 Score=63.10 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=24.0
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
+|..++|.||||+|||++|+.||+.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446789999999999999999999873
No 191
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.48 E-value=0.0015 Score=62.76 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=24.4
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
++..++|.|+||+|||++|+.||+.+.-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467899999999999999999998843
No 192
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.46 E-value=0.0069 Score=74.55 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=52.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhh-----------------HHhHHHHHHH-hC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKH-----------------FFDSLAALVK-KR 300 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~-----------------liG~lt~al~-~~ 300 (550)
.+++|+||||||||++|.+++...-. ...+...+++.+..+...... ....+.+.+. ..
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~k---~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~ 1158 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1158 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhC
Confidence 68999999999999999998876655 455777788877665544222 1124444444 34
Q ss_pred CCCeEEeccccccCH
Q 036633 301 PYSVVLFDKIEKANS 315 (550)
Q Consensus 301 p~~VlllDEIeka~~ 315 (550)
...+|++|++..+.|
T Consensus 1159 ~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1159 AVDVIVVDSVAALTP 1173 (2050)
T ss_dssp CCSEEEESCGGGCCC
T ss_pred CCCEEEECCcccccc
Confidence 468999999988844
No 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.45 E-value=0.025 Score=65.64 Aligned_cols=47 Identities=21% Similarity=0.104 Sum_probs=38.0
Q ss_pred hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHH
Q 036633 204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
+.+..+|.+..++.|...+... +.+.++.++||.|+|||+||+.++.
T Consensus 126 ltk~~VGRe~eLeeL~elL~~~----------d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 126 FAKYNVSRLQPYLKLRQALLEL----------RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHC----------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHhcc----------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 3445699999999998888753 0136889999999999999999985
No 194
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.45 E-value=0.0015 Score=60.51 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=23.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++|.||||+|||++|+.|++.+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5889999999999999999999873
No 195
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.44 E-value=0.004 Score=64.12 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||+|.++|+-.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCC
Confidence 57889999999999999999987643
No 196
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.42 E-value=0.0017 Score=58.55 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.7
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++|.|+||+|||++|+.|++.+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999998754
No 197
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.40 E-value=0.014 Score=60.16 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=25.1
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.|.+++|+||+|+|||++++.||..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3479999999999999999999998865
No 198
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.39 E-value=0.0045 Score=64.26 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=23.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.|+||+|+|||+|.++|+-.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCC
Confidence 57889999999999999999987643
No 199
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.38 E-value=0.0018 Score=61.12 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=22.1
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++|.||||+|||++|+.|++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998743
No 200
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.37 E-value=0.0018 Score=61.26 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.6
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
.++|+||||+|||++|+.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998873
No 201
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.36 E-value=0.15 Score=54.82 Aligned_cols=85 Identities=13% Similarity=0.191 Sum_probs=50.3
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-----------h-----------hhHHhHHH
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-----------I-----------KHFFDSLA 294 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-----------~-----------s~liG~lt 294 (550)
+|.+++|+|++|||||+++..||..+.. .......+++..|..... + ..+.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~---~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al 176 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR---KGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGV 176 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHH
Confidence 4589999999999999999999988765 333555566544432110 0 00000111
Q ss_pred HHHHhCCCCeEEeccccccCH--HHHHHHHHh
Q 036633 295 ALVKKRPYSVVLFDKIEKANS--SILNLLLKI 324 (550)
Q Consensus 295 ~al~~~p~~VlllDEIeka~~--~v~~~Ll~~ 324 (550)
..+....+.++|+|-....+. .....+..+
T Consensus 177 ~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~ 208 (504)
T 2j37_W 177 EKFKNENFEIIIVDTSGRHKQEDSLFEEMLQV 208 (504)
T ss_dssp HHHHHTTCCEEEEEECCCCTTCHHHHHHHHHH
T ss_pred HHHHHCCCcEEEEeCCCCcccchhHHHHHHHH
Confidence 223336678999998877653 444444433
No 202
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.36 E-value=0.0057 Score=64.37 Aligned_cols=84 Identities=21% Similarity=0.359 Sum_probs=51.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC-CCCchh----hhhhHHh-----HHHHHHHhCCCCeEEec
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG-NYTELE----SIKHFFD-----SLAALVKKRPYSVVLFD 308 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s-~~~~~~----~~s~liG-----~lt~al~~~p~~VlllD 308 (550)
+.++++||+|+|||++.+++...+.. ....++.+.-. ++.-.+ .+..-+| .+..++++.| .++++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~---~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~p-d~i~vg 243 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNS---SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDP-DVVMVG 243 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCC---TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCC-SEEEES
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCC---CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCC-CeEEEc
Confidence 78999999999999999999998865 44455544321 221100 0111122 4556677877 788999
Q ss_pred cccccCHHHHHHHHHhhhhc
Q 036633 309 KIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 309 EIeka~~~v~~~Ll~~ld~g 328 (550)
||.. +......++....|
T Consensus 244 EiRd--~et~~~~l~a~~tG 261 (418)
T 1p9r_A 244 EIRD--LETAQIAVQASLTG 261 (418)
T ss_dssp CCCS--HHHHHHHHHHHHTT
T ss_pred CcCC--HHHHHHHHHHHHhC
Confidence 9862 33333334454556
No 203
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.35 E-value=0.0027 Score=62.24 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.5
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
|..++|+|+||+|||++|+.|++.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999999864
No 204
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.35 E-value=0.0019 Score=60.98 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=22.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.|+||||+|||++++.|+..+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 688999999999999999999876
No 205
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.33 E-value=0.0054 Score=60.19 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+..+.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5889999999999999999998764
No 206
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.32 E-value=0.0035 Score=57.34 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=28.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
..+.|.|++|+|||++++.|+..+.. ..-+++.+|
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~---~g~~~i~~d 40 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLD 40 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh---CCCcEEEEC
Confidence 67889999999999999999998843 222666666
No 207
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.32 E-value=0.0022 Score=59.01 Aligned_cols=24 Identities=8% Similarity=0.307 Sum_probs=22.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.|+||||+|||++++.|+..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 588999999999999999999875
No 208
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.31 E-value=0.002 Score=60.54 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.9
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHh
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
+..++|+||||+|||++++.|++.+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3688999999999999999999986
No 209
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.31 E-value=0.0018 Score=61.50 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=23.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..++|.||||+|||++|+.||+.+.-
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 57899999999999999999998843
No 210
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.29 E-value=0.0023 Score=64.55 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.8
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+..++++||||||||++|..||+.+.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCcc
Confidence 347889999999999999999998755
No 211
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.28 E-value=0.0026 Score=59.50 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=24.2
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
|..++|.||||+|||++|+.|++.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 357899999999999999999999865
No 212
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.28 E-value=0.0071 Score=62.52 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=45.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh------------------hhHHhHHHHHHHhC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI------------------KHFFDSLAALVKKR 300 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~------------------s~liG~lt~al~~~ 300 (550)
..++++||||+|||++|..++..+.. ...+.+.+++..-.+.... ..++..+...++..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 57888999999999999998877654 3346777776543222110 01111222223345
Q ss_pred CCCeEEeccccccC
Q 036633 301 PYSVVLFDKIEKAN 314 (550)
Q Consensus 301 p~~VlllDEIeka~ 314 (550)
...+|++|.+..+.
T Consensus 152 ~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 152 AIDVVVVDSVAALT 165 (366)
T ss_dssp CCSEEEEECTTTCC
T ss_pred CCCEEEEeChHHhc
Confidence 56899999987664
No 213
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.28 E-value=0.0026 Score=59.66 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.9
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+|..++|.|+||+|||++|+.|++.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999998765
No 214
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.27 E-value=0.0025 Score=59.68 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=27.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
..+.|+||+|+|||++++.|+..+ + .+.+|...+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~-g-------~~~i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET-G-------LEFAEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-C-------CEEEEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-C-------CeEEccccc
Confidence 688999999999999999999987 3 355665544
No 215
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.27 E-value=0.0023 Score=60.05 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=24.9
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+|..++|.|++|+|||++|+.|++.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4468999999999999999999998865
No 216
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.26 E-value=0.011 Score=59.08 Aligned_cols=42 Identities=12% Similarity=0.194 Sum_probs=31.0
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
+|.+++|+||+|+|||+++..||..+... ....+.-+++..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLE--KHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCEEEEEecCcc
Confidence 34799999999999999999999888530 1225555665554
No 217
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.25 E-value=0.0032 Score=61.30 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=32.8
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCC-----CCceeEEecCCCCc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDN-----DNHLIHFDMGNYTE 282 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-----~~~li~id~s~~~~ 282 (550)
+|..+.+.||+|+|||++|+.|++.+.. . ......+++..|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~---~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ---NEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG---GGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh---hcccccCCceEEEecCcccc
Confidence 4578999999999999999999998754 1 11344688877753
No 218
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.18 E-value=0.013 Score=64.53 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|+..+..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 57889999999999999999987643
No 219
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.17 E-value=0.003 Score=61.18 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
+|..++|.||+|+|||++++.|++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998873
No 220
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.17 E-value=0.0057 Score=63.46 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=38.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKAN 314 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~ 314 (550)
..++++||||+|||+++++|+..+.+ .++.++.+. . .....+|.+ -...++++|+++...
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g------~~~~~~~~~---~-~~~~~lg~~------~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGG------KALNVNLPL---D-RLNFELGVA------IDQFLVVFEDVKGTG 229 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCC------EEECCSSCT---T-THHHHHGGG------TTCSCEEETTCCCST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCC------cEEEEeccc---h-hHHHHHHHh------cchhHHHHHHHHHHH
Confidence 58899999999999999999998755 444433322 1 111123311 122467999998654
No 221
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.16 E-value=0.0042 Score=57.11 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=22.1
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
.+.|.|++|+|||++|+.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999883
No 222
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.16 E-value=0.0056 Score=61.21 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=25.9
Q ss_pred cCCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 235 RRQLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+++|..+.++||||+|||++|+.|+..+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 335578999999999999999999998864
No 223
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.15 E-value=0.0028 Score=59.51 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=25.5
Q ss_pred hcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 229 KKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 229 ~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
-+|+...-.+ ..+.++||||+|||++|+.|+..+
T Consensus 11 ~~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 11 SSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp ---CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3455444444 688899999999999999999865
No 224
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.15 E-value=0.011 Score=64.89 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|+..+..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCC
Confidence 56789999999999999999987643
No 225
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.14 E-value=0.012 Score=64.87 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=23.4
Q ss_pred CCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633 301 PYSVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 301 p~~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
+..+|++||+..++...+..|++.+..+
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~~ 289 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALPDH 289 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCCTT
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCCCC
Confidence 4579999999999998888888877554
No 226
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.13 E-value=0.006 Score=61.41 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=32.5
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhc--cCCCCCCceeEEecCCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELY--DNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~--~~~~~~~~li~id~s~~~ 281 (550)
++..+.++||+|+|||++++.|+..+. . ....+..+++..+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~---~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWP---EHRRVELITTDGFL 122 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTST---TCCCEEEEEGGGGB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCC---CCCeEEEEecCCcc
Confidence 447889999999999999999999875 3 33456666666654
No 227
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.12 E-value=0.014 Score=64.24 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||+++++|+..+..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccC
Confidence 46789999999999999999987643
No 228
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.11 E-value=0.0066 Score=65.58 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=50.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec-CCCCchh--h--------h----hhHHhHHHHHHHhCCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM-GNYTELE--S--------I----KHFFDSLAALVKKRPYS 303 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~-s~~~~~~--~--------~----s~liG~lt~al~~~p~~ 303 (550)
.+++++||+|+|||++.++|+..+.. ....+.++- .++.-.+ . + ..+...+..+++..| .
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~----~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~P-D 335 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPP----DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRP-D 335 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCT----TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCC-S
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCC----CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCC-C
Confidence 57999999999999999999988754 334555532 2232111 0 0 001113445667788 7
Q ss_pred eEEeccccccCHHHHHHHHHhhhhc
Q 036633 304 VVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 304 VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
++++.|+--. ++. .+++.+..|
T Consensus 336 ~iivgEir~~--E~~-~~l~a~~tG 357 (511)
T 2oap_1 336 YIIVGEVRGR--EAQ-TLFQAMSTG 357 (511)
T ss_dssp EEEESCCCST--HHH-HHHHHHHTT
T ss_pred eEEeCCcCHH--HHH-HHHHhhcCC
Confidence 8899998642 343 345556556
No 229
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.10 E-value=0.014 Score=59.17 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=29.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccC---CCCCCceeEEecCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDN---NDNDNHLIHFDMGN 279 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~---~~~~~~li~id~s~ 279 (550)
..++++||||+|||++|..++...... +....+.+.++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 688999999999999999999875320 00134677777665
No 230
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.10 E-value=0.0077 Score=62.05 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+-.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 5788999999999999999998764
No 231
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.09 E-value=0.0078 Score=62.08 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+-.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 5788999999999999999998764
No 232
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.09 E-value=0.018 Score=63.19 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=23.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|+..+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57889999999999999999987653
No 233
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.07 E-value=0.0032 Score=59.57 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.9
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
.++|.||||+|||++|+.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999873
No 234
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.07 E-value=0.0047 Score=57.43 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=23.1
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHh
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
|..+.|.||+|+|||++++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999987
No 235
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.07 E-value=0.0084 Score=62.07 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++||-.+.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 5788999999999999999998764
No 236
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.06 E-value=0.017 Score=63.44 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||++++.|+..+.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhhccC
Confidence 4678999999999999999998764
No 237
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.06 E-value=0.0034 Score=58.34 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=23.4
Q ss_pred CCCeeEEEeccCCCcHHHHHHHHHHH
Q 036633 236 RQLGLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 236 ~~p~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
++|..+.++|++|+|||++|+.|++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35578999999999999999999986
No 238
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.04 E-value=0.0036 Score=58.08 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.6
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.+.|.|++|+|||++++.|++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5789999999999999999998854
No 239
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.04 E-value=0.0071 Score=62.22 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+-.+.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5788999999999999999998764
No 240
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.02 E-value=0.011 Score=58.17 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||+|.++|+..+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 57889999999999999999987643
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.01 E-value=0.0038 Score=58.13 Aligned_cols=24 Identities=33% Similarity=0.721 Sum_probs=22.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.|+||+|+|||++++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 578899999999999999999874
No 242
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.01 E-value=0.032 Score=58.25 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=27.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccC---CCCCCceeEEecCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDN---NDNDNHLIHFDMGN 279 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~---~~~~~~li~id~s~ 279 (550)
..++|+||||+|||+|++.++-..... +......+.++..+
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 689999999999999999876433210 00123567777655
No 243
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.00 E-value=0.0035 Score=58.38 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=22.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.|+||||+|||++++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 588999999999999999999876
No 244
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.99 E-value=0.015 Score=59.72 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=29.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccC---CCCCCceeEEecCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDN---NDNDNHLIHFDMGN 279 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~---~~~~~~li~id~s~ 279 (550)
..+.++||||+|||++++.++...... |......+.+|..+
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 688999999999999999999876210 00013556777644
No 245
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.99 E-value=0.0039 Score=57.54 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=20.9
Q ss_pred eEEEeccCCCcHHHHHHHHHHHh
Q 036633 240 LFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
.++|+||+|+|||++++.|+..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 67899999999999999999754
No 246
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.97 E-value=0.041 Score=52.61 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=16.4
Q ss_pred eeEEEeccCCCcHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAI 258 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~l 258 (550)
..+++.||||+|||++...+
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHH
Confidence 38899999999999865544
No 247
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.97 E-value=0.0034 Score=58.66 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.6
Q ss_pred eEEEeccCCCcHHHHHHHHHHHh
Q 036633 240 LFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
.+.++||+|+|||++++.|+. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 578999999999999999999 5
No 248
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.96 E-value=0.0036 Score=57.90 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=22.0
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
++.|+||+|+|||++++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 678999999999999999998864
No 249
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.95 E-value=0.0042 Score=64.77 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+++.||||+|||++|..||+.+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCC
Confidence 57889999999999999999999865
No 250
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.94 E-value=0.0042 Score=63.44 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=23.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..++++||||+|||++|+.||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCC
Confidence 47899999999999999999998854
No 251
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.94 E-value=0.11 Score=54.92 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=28.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG 278 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s 278 (550)
..++++||||+|||++|..++..+... ...+.+.+++.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E 241 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLE 241 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECC
Confidence 688999999999999999999876430 12356666543
No 252
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.91 E-value=0.011 Score=58.45 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|.++|+..+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5789999999999999999998764
No 253
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.91 E-value=0.005 Score=59.55 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.8
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
+|..+.+.||||+|||++|+.|++.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999999883
No 254
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.90 E-value=0.0057 Score=62.90 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|.++|+-.+.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5788999999999999999998764
No 255
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.89 E-value=0.0041 Score=59.37 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.5
Q ss_pred eEEEeccCCCcHHHHHHHHHHHh
Q 036633 240 LFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
.++|.||||+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 256
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.88 E-value=0.0058 Score=57.64 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.8
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
+..++|.|++|+|||++++.|++.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36888999999999999999999886
No 257
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.86 E-value=0.0044 Score=60.59 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
|...+++.+.-.+... . +...+.|+||+|+|||++++.||+.+.-
T Consensus 30 ~~~~~l~~~~~~i~~~---l-------~g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPY---L-------NGRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp --CHHHHHHHHTTHHH---H-------TTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred Ccchhhhhhhhhhhhh---c-------CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4455666666655542 0 1248999999999999999999998844
No 258
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.84 E-value=0.0047 Score=58.54 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=22.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.|.||||+|||++|+.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999987
No 259
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.83 E-value=0.045 Score=59.43 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=25.8
Q ss_pred CCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 231 GLSSRRQLGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 231 gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
++.-+...-++.|+||+|+||||+.++|+..+.
T Consensus 18 ~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 18 GLPTPKNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 344443337889999999999999999998653
No 260
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.82 E-value=0.0067 Score=55.95 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.9
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
.+.|.||+|+|||++++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999983
No 261
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.82 E-value=0.0079 Score=56.40 Aligned_cols=25 Identities=40% Similarity=0.412 Sum_probs=23.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||++++.|+..+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6889999999999999999999875
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.81 E-value=0.0046 Score=57.93 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=22.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.|+||+|+|||++++.|...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999876
No 263
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.80 E-value=0.068 Score=57.50 Aligned_cols=75 Identities=12% Similarity=0.197 Sum_probs=47.1
Q ss_pred CCCeEEeccccccC----HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc
Q 036633 301 PYSVVLFDKIEKAN----SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS 376 (550)
Q Consensus 301 p~~VlllDEIeka~----~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~ 376 (550)
|+-||++||...+- ..+.+.|.++...| +.. ...+|++|.... ..
T Consensus 297 P~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~g--Ra~----------GI~LIlaTQrp~-------------------~d 345 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTVGKKVEELIARLAQKA--RAA----------GIHLVLATQRPS-------------------VD 345 (512)
T ss_dssp CEEEEEEETHHHHHHHHHHHHHHHHHHHHHHC--GGG----------TEEEEEEESCCC-------------------TT
T ss_pred CcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHh--hhC----------CcEEEEEecCCc-------------------cc
Confidence 44589999996432 35666777777777 511 223455555432 12
Q ss_pred CCChhhhhhccceeEecCCCCCCHHHHHHHHHH
Q 036633 377 LFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW 409 (550)
Q Consensus 377 ~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~ 409 (550)
.++..+.+.+..-|.|. --+..+...|+..
T Consensus 346 vl~~~i~~n~~~RI~lr---v~s~~dsr~ilg~ 375 (512)
T 2ius_A 346 VITGLIKANIPTRIAFT---VSSKIDSRTILDQ 375 (512)
T ss_dssp TSCHHHHHHCCEEEEEC---CSSHHHHHHHHSS
T ss_pred cccHHHHhhcCCeEEEE---cCCHHHHHHhcCC
Confidence 45666777777778888 7778887776643
No 264
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.80 E-value=0.048 Score=55.85 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.6
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
++..+.|+|+||+|||+++..|+..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3478999999999999999999988755
No 265
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.76 E-value=0.006 Score=57.44 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=22.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++|+||||+|||+|++.|.+..
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 688999999999999999999875
No 266
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.74 E-value=0.0097 Score=61.35 Aligned_cols=82 Identities=18% Similarity=0.305 Sum_probs=49.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe-cCCCCch---hh---hh----hH---Hh-----HHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD-MGNYTEL---ES---IK----HF---FD-----SLAALVKK 299 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id-~s~~~~~---~~---~s----~l---iG-----~lt~al~~ 299 (550)
..++++||+|+|||+++++|+..+.. ....+.++ ..++... +. +. .+ .+ .+..+++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~----~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~ 251 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF----DQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM 251 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT----TSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC----CceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc
Confidence 58999999999999999999987754 22444444 2222110 00 00 00 11 33444555
Q ss_pred CCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633 300 RPYSVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 300 ~p~~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
.| .+++++|+.. ..+.+ +++.+..|
T Consensus 252 ~p-d~~l~~e~r~--~~~~~-~l~~l~~g 276 (361)
T 2gza_A 252 KP-TRILLAELRG--GEAYD-FINVAASG 276 (361)
T ss_dssp CC-SEEEESCCCS--THHHH-HHHHHHTT
T ss_pred CC-CEEEEcCchH--HHHHH-HHHHHhcC
Confidence 56 6899999874 34444 56667777
No 267
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.74 E-value=0.01 Score=61.39 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+-.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 5788999999999999999998764
No 268
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.73 E-value=0.0045 Score=57.97 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.9
Q ss_pred eEEEeccCCCcHHHHHHHHHH
Q 036633 240 LFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~ 260 (550)
.+.|+||+|+|||++++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999997
No 269
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.69 E-value=0.006 Score=56.85 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.8
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.+.+.||+|+|||++|+.||+.+.-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 7889999999999999999998743
No 270
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.65 E-value=0.01 Score=60.78 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+-.+.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 5788999999999999999998764
No 271
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.65 E-value=0.026 Score=60.12 Aligned_cols=88 Identities=14% Similarity=0.184 Sum_probs=51.3
Q ss_pred CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch--------------hhh-hhHHh--------H
Q 036633 236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL--------------ESI-KHFFD--------S 292 (550)
Q Consensus 236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~--------------~~~-s~liG--------~ 292 (550)
.+|..++|+|.||+|||++++.|++.++. ...+...++...+... ... .+... .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~---~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~ 113 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF---IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALND 113 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc---cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999998865 2234444443222111 000 00011 1
Q ss_pred HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhh
Q 036633 293 LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKT 327 (550)
Q Consensus 293 lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~ 327 (550)
+...+....+.++++|.... ..+....+.+.+..
T Consensus 114 ~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 114 VRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 13334445666889998765 55555666665543
No 272
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.61 E-value=0.0068 Score=57.28 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=21.4
Q ss_pred CeeEEEeccCCCcHHHHHHHHHH
Q 036633 238 LGLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
|..+.|.|++|+|||++++.|++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999998
No 273
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.61 E-value=0.017 Score=59.55 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=23.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||+|.++|+..+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 58899999999999999999987643
No 274
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.60 E-value=0.0067 Score=60.24 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.2
Q ss_pred CCCeeEEEeccCCCcHHHHHHHHHH
Q 036633 236 RQLGLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 236 ~~p~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
.+|..+.++|++|+|||++|+.|++
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999994
No 275
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.60 E-value=0.0068 Score=56.53 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.4
Q ss_pred eEEEeccCCCcHHHHHHHHHHHh
Q 036633 240 LFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
.++|+||||+|||+|++.|.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999998765
No 276
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.59 E-value=0.026 Score=57.56 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=29.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccC---CCCCCceeEEecCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDN---NDNDNHLIHFDMGN 279 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~---~~~~~~li~id~s~ 279 (550)
..++++||||+|||++|..++...-.. +....+.+.++...
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 688999999999999999998863110 00133677777655
No 277
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.55 E-value=0.013 Score=59.01 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=24.6
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
|..+.|+||+|+|||++++.||..+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 478999999999999999999998865
No 278
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.54 E-value=0.025 Score=62.23 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||++.+.|+..+.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4678999999999999999998764
No 279
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.54 E-value=0.0047 Score=61.76 Aligned_cols=42 Identities=5% Similarity=0.178 Sum_probs=29.6
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT 281 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~ 281 (550)
++..+.+.||+|+|||++|+.|++.+.. ....+..+++..|.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~---~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRR---EGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH---HTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhh---cCCCeeEeecchhh
Confidence 3457899999999999999999998753 22236677877775
No 280
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.54 E-value=0.007 Score=56.66 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=27.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
..+.++|++|+|||++|+.|++.++ +..+|+..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg--------~~vid~D~~ 46 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYG--------AHVVNVDRI 46 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC--------CEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--------CEEEECcHH
Confidence 6788999999999999999999863 344665554
No 281
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.50 E-value=0.012 Score=56.24 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=29.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
..++++||||+|||++|..++..+.. ...+.+.++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 58899999999999999888776544 344666676543
No 282
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.47 E-value=0.038 Score=58.29 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=47.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHH------------hHHHHHHHhC------
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFF------------DSLAALVKKR------ 300 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~li------------G~lt~al~~~------ 300 (550)
...++.|+||+|||++...++.. . +.+.+-...-....-..++. -.+..++.+.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~--~------~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~ 233 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF--E------EDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARC 233 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT--T------TCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc--C------CeEEEeCCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCC
Confidence 68899999999999998776632 1 22222111000000000000 0122233221
Q ss_pred CCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633 301 PYSVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 301 p~~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
++.+|++||+-.+|+..+..++..+...
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~~~~ 261 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMSLCD 261 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHTTCS
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhCCCC
Confidence 2689999999999999999888776543
No 283
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=95.47 E-value=0.027 Score=46.27 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCc--cccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc--hhhHHHHHh
Q 036633 396 VPLLDTTRLLLREWACEETKRRNNDSKAV--IVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ--RPSADHVID 466 (550)
Q Consensus 396 ~pL~~e~i~~I~~~~l~~~~~~l~~~~~~--~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~--~~la~~~l~ 466 (550)
+.++.++...|+.++| +...+..+|+- .+.++++++..|.. .| .+.|. |.|++.|.. ...+..++.
T Consensus 1 sGYt~~EK~~IAk~~L--iPkql~~~GL~~~~~~i~d~al~~iI~-~YTREaGV--RnLer~i~~i~RK~a~~i~~ 71 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRHL--LPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGV--RGLEREISKLCRKAVKQLLL 71 (94)
T ss_dssp CCCCHHHHHHHHHHTH--HHHHHHHTTCCTTTEEECHHHHHHHHH-HHCCCSSS--HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc--cHHHHHHhCCChhhceECHHHHHHHHH-Hhcccccc--hHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999 55555555552 58999999999998 45 77898 999999998 556666553
No 284
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.46 E-value=0.0093 Score=58.10 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=22.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||++++.||+.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5889999999999999999998873
No 285
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.45 E-value=0.012 Score=53.21 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=22.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.|.||+|+|||++.+.|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 588999999999999999999998
No 286
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.44 E-value=0.0084 Score=56.36 Aligned_cols=24 Identities=17% Similarity=0.592 Sum_probs=22.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.|+||+|+|||+++++|+..+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 588999999999999999999876
No 287
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.42 E-value=0.058 Score=63.92 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHH
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIA 259 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la 259 (550)
.|..|+..+...+... +|...+++||+|+|||++|-..+
T Consensus 607 ~Q~~ai~~il~~~~~g-----------~p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 607 DQAQAINAVLSDMCQP-----------LAMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp HHHHHHHHHHHHHHSS-----------SCCEEEEECCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-----------CcCcEEEECCCCCCHHHHHHHHH
Confidence 4666776666655543 56689999999999999876444
No 288
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.39 E-value=0.029 Score=68.23 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=49.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-------------------HHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-------------------SLAALVKK 299 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-------------------~lt~al~~ 299 (550)
..++++||||+|||++|..+|..+.. ...+++.+++.+-.+... +.-+| .+...++.
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~---~g~~VlyiS~Ees~~ql~-A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~ 808 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHH---cCCCeEEEeccchHHHHH-HHHcCCChhheEEecCCcHHHHHHHHHHHHHc
Confidence 68999999999999999999888765 444667777655443221 22122 22223345
Q ss_pred CCCCeEEeccccccC
Q 036633 300 RPYSVVLFDKIEKAN 314 (550)
Q Consensus 300 ~p~~VlllDEIeka~ 314 (550)
...++|++|.+.-+.
T Consensus 809 ~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 809 GAVDVIVVDSVAALT 823 (1706)
T ss_dssp TCCSEEEESCSTTCC
T ss_pred cCCCEEEEechhhhc
Confidence 566899999998776
No 289
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.38 E-value=0.038 Score=53.12 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=41.8
Q ss_pred eeEEEeccCCCcHHHHH-HHHHHHhccCCCCCCceeEEe--cC-CCCchhhhhhHHh------------HHHHHHHhCCC
Q 036633 239 GLFLFAGPNCSGKAELA-KAIANELYDNNDNDNHLIHFD--MG-NYTELESIKHFFD------------SLAALVKKRPY 302 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lA-k~la~~l~~~~~~~~~li~id--~s-~~~~~~~~s~liG------------~lt~al~~~p~ 302 (550)
...+++||.|.|||+.+ +.+.++... ....+-+. .. .|. ....+++ | .+.+.+ .++
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~----g~kvli~kp~~D~Ryg-~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~ 91 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIA----QYKCLVIKYAKDTRYS-SSFCTHD-RNTMEALPACLLRDVAQEA--LGV 91 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTT----TCCEEEEEETTCCCC-------------CEEEEESSGGGGHHHH--TTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC----CCeEEEEeecCCccch-HHHHhhc-CCeeEEEecCCHHHHHHHh--ccC
Confidence 56789999999999655 444444433 22333222 11 122 1122222 3 122222 567
Q ss_pred CeEEeccccccCHHHHHHHHHhhhh
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKT 327 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~ 327 (550)
.+|++||+.-+.. ...+.+.+++
T Consensus 92 dvViIDEaQF~~~--v~el~~~l~~ 114 (234)
T 2orv_A 92 AVIGIDEGQFFPD--IVEFCEAMAN 114 (234)
T ss_dssp SEEEESSGGGCTT--HHHHHHHHHH
T ss_pred CEEEEEchhhhhh--HHHHHHHHHh
Confidence 8999999999974 4444555544
No 290
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.36 E-value=0.0083 Score=57.10 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=22.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.|+||+|+|||++++.|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578899999999999999999876
No 291
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.34 E-value=0.0098 Score=57.11 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 236 RQLGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
.++..+.|.||+|+|||++++.|++.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3446889999999999999999999873
No 292
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.34 E-value=0.035 Score=60.67 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
-|..|+..+...+... ...+++++|||+|||.+|-.++..+..
T Consensus 182 ~Q~~ai~~~~~~~~~~------------~~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 182 YQQIAINRAVQSVLQG------------KKRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp HHHHHHHHHHHHHHTT------------CSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC------------CCceEEEecCCCChHHHHHHHHHHHHh
Confidence 3888888887777643 136789999999999998888776643
No 293
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.32 E-value=0.0085 Score=56.55 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=23.6
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
|..+.+.||+|+|||++++.|++.++-
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457899999999999999999998743
No 294
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.25 E-value=0.0059 Score=57.26 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.5
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.+.|.||+|+|||++++.|++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999998853
No 295
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.23 E-value=0.049 Score=60.48 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=40.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL 318 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~ 318 (550)
...|+.||||||||+++-.+...+.. ...++...-.+ +.++.. +.+.+......++=+-...+.++.+.
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~---~~~~ILv~a~T----N~AvD~----i~erL~~~~~~ilRlG~~~r~~~~~~ 274 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVK---QGLKVLCCAPS----NIAVDN----LVERLALCKQRILRLGHPARLLESIQ 274 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESS----HHHHHH----HHHHHHHTTCCEEECSCCSSCCHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEcCc----hHHHHH----HHHHHHhcCCceEEecchhhhhhhhh
Confidence 37799999999999866555444444 33344333322 223333 34444555556666666566666554
Q ss_pred H
Q 036633 319 N 319 (550)
Q Consensus 319 ~ 319 (550)
.
T Consensus 275 ~ 275 (646)
T 4b3f_X 275 Q 275 (646)
T ss_dssp T
T ss_pred h
Confidence 3
No 296
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.22 E-value=0.012 Score=53.51 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=17.7
Q ss_pred eeEEEeccCCCcHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKA 257 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~ 257 (550)
..+.++||||+|||+++++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 6889999999999999994
No 297
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.15 E-value=0.015 Score=55.43 Aligned_cols=84 Identities=17% Similarity=0.292 Sum_probs=49.9
Q ss_pred eeEEEeccCCCcHHH-HHHHHHHHhccCCCCCCceeEEec---CCCCchhhhhhHHh------------HHHHHHHhCCC
Q 036633 239 GLFLFAGPNCSGKAE-LAKAIANELYDNNDNDNHLIHFDM---GNYTELESIKHFFD------------SLAALVKKRPY 302 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~-lAk~la~~l~~~~~~~~~li~id~---s~~~~~~~~s~liG------------~lt~al~~~p~ 302 (550)
...+++||.|+|||+ +.+.+.++... . ...+-+.. ..|.+..-.|+ +| .+.+.+ ..+.
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~---g-~kvli~kp~~D~R~~~~~I~Sr-~G~~~~a~~v~~~~di~~~i-~~~~ 102 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYA---K-QKVVVFKPAIDDRYHKEKVVSH-NGNAIEAINISKASEIMTHD-LTNV 102 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHT---T-CCEEEEEEC-----------CB-TTBCCEEEEESSGGGGGGSC-CTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---C-CceEEEEeccCCcchhhhHHHh-cCCceeeEEeCCHHHHHHHH-hcCC
Confidence 677899999999999 55666555543 2 22333321 11211111111 22 111112 2356
Q ss_pred CeEEeccccccCHHHHHHHHHhhhhc
Q 036633 303 SVVLFDKIEKANSSILNLLLKILKTD 328 (550)
Q Consensus 303 ~VlllDEIeka~~~v~~~Ll~~ld~g 328 (550)
.+|++||+.-+++++.+.+..+.+.|
T Consensus 103 dvV~IDEaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 103 DVIGIDEVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp SEEEECCGGGSCTHHHHHHHHHHHTT
T ss_pred CEEEEechhcCCHHHHHHHHHHHHCC
Confidence 79999999999999999998888777
No 298
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.15 E-value=0.03 Score=56.55 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=45.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh---------------HH----HHH---
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD---------------SL----AAL--- 296 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG---------------~l----t~a--- 296 (550)
+..+++||||+|||+||-.++......+ .....+.+|..+-..... .+-+| .+ .+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~~~r-a~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~ 106 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGITPAY-LRSMGVDPERVIHTPVQSLEQLRIDMVNQLDA 106 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCCHHH-HHHTTCCGGGEEEEECSBHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhhHHH-HHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHH
Confidence 5789999999999999887766553300 134677777655333221 12223 22 222
Q ss_pred HHhCCCCeEEeccccccC
Q 036633 297 VKKRPYSVVLFDKIEKAN 314 (550)
Q Consensus 297 l~~~p~~VlllDEIeka~ 314 (550)
++.....+|++|=|.-+.
T Consensus 107 i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 107 IERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp CCTTCCEEEEEECSTTCB
T ss_pred hhccCceEEEEecccccc
Confidence 244455899999887653
No 299
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.15 E-value=0.012 Score=56.32 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|.++|+..+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5889999999999999999998763
No 300
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.12 E-value=0.011 Score=58.63 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++|.||||+|||++|+.|++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999999864
No 301
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.12 E-value=0.016 Score=55.67 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=24.0
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
++..+.|.||||+|||++++.|++.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 336788999999999999999999985
No 302
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.12 E-value=0.028 Score=56.59 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=21.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..++++||||+|||++|..++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68899999999999999999875
No 303
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.08 E-value=0.015 Score=58.76 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=24.7
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
++..+.++||+|+||||+++.|+..+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 3378899999999999999999998854
No 304
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.05 E-value=0.013 Score=56.55 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=23.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+||||+++.|+..+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6889999999999999999999874
No 305
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.05 E-value=0.033 Score=52.31 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=24.0
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+..++|+|++|+|||+++..++..++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 368999999999999999999988754
No 306
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.04 E-value=0.014 Score=53.23 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=24.6
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
|+..+|+||+|+|||+++++|+-.+++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 468899999999999999999998876
No 307
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.02 E-value=0.0095 Score=56.06 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++|+||||+|||++|..|++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999999864
No 308
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.01 E-value=0.048 Score=65.39 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=22.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||+++++|...+..
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~~~ 442 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLYDP 442 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46789999999999999999987643
No 309
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.01 E-value=0.054 Score=65.11 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=22.0
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.+-++||||+|||+++++|.+.+..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhcCccC
Confidence 4689999999999999999987754
No 310
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.99 E-value=0.03 Score=67.27 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=22.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||++++.|...+..
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred cEEEEEecCCCcHHHHHHHhcccccc
Confidence 35689999999999999999987654
No 311
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.97 E-value=0.038 Score=52.64 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=26.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH-hccCCCCCCceeEEecC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE-LYDNNDNDNHLIHFDMG 278 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~-l~~~~~~~~~li~id~s 278 (550)
..++++|+||+|||++|..++.. ... ...+.+.+++.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~---~~~~v~~~s~E 68 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEE---YGEPGVFVTLE 68 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHH---HCCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHh---cCCCceeeccc
Confidence 58899999999999999887654 222 23355555544
No 312
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.95 E-value=0.12 Score=54.52 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=29.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG 278 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s 278 (550)
..++++||||+|||++|..+|...-.. ...+.+.+++.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE 238 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLE 238 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECC
Confidence 688999999999999999998876430 23467777654
No 313
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.92 E-value=0.011 Score=54.84 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=25.5
Q ss_pred EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
++++|++|+|||++|..++.. .. +.+.++-+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~------~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-AP------QVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CS------SEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CC------CeEEEecCC
Confidence 689999999999999999966 33 566666544
No 314
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.89 E-value=0.0085 Score=57.27 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=15.9
Q ss_pred eeEEEeccCCCcHHHHHHHHH-HHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIA-NEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la-~~l 262 (550)
..+.|+||+|+|||++++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 578899999999999999999 764
No 315
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.89 E-value=0.025 Score=51.77 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=23.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.|+|++|+|||+++..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 58899999999999999999998754
No 316
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.88 E-value=0.023 Score=56.34 Aligned_cols=36 Identities=8% Similarity=0.024 Sum_probs=28.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCC-ceeEEec
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDN-HLIHFDM 277 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~-~li~id~ 277 (550)
..++++||||+|||++++.|+..+.. ... +++.++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~---~~G~~v~~~~~ 72 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGT---AMGKKVGLAML 72 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH---TSCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH---HcCCeEEEEeC
Confidence 58899999999999999999988765 322 5555554
No 317
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.80 E-value=0.017 Score=62.58 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.7
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.|..++|+|.||+|||++|+.|++.+.-
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4468899999999999999999998843
No 318
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.72 E-value=0.017 Score=53.92 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.8
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
.+.|+||+|+|||++++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 578999999999999999999873
No 319
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.70 E-value=0.025 Score=62.32 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=29.5
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
+|..++|.|+||+|||++|+.|++.+.. ...+++.+|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~---~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEec
Confidence 4578999999999999999999999843 222666665
No 320
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.17 Score=55.58 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
-.+.|+||+|+||||+.++|+-.+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCC
Confidence 68999999999999999999987643
No 321
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.67 E-value=0.11 Score=54.84 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=29.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
..+++.|+||+|||++|..+|...-. ...+.+.+.+.+
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~---~g~~vl~fSlEm 235 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSD---NDDVVNLHSLEM 235 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHH---TTCEEEEECSSS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH---cCCEEEEEECCC
Confidence 68899999999999999999887755 334666666543
No 322
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.57 E-value=0.033 Score=54.79 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++||||+|||+++..++..+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 6889999999999999999997653
No 323
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.50 E-value=0.022 Score=57.31 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.|+||+|+|||+|+++|+..+.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~~G 152 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFLGG 152 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCcHHHHHHHHhhhcCc
Confidence 68899999999999999999999844
No 324
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.39 E-value=0.078 Score=56.30 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++|+||||||||+|+..|+....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh
Confidence 5789999999999999999987654
No 325
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.33 E-value=0.039 Score=60.37 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=29.9
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCC-CceeEEec
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDND-NHLIHFDM 277 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~-~~li~id~ 277 (550)
+|..++|.|+||+|||++|+.|++.++. .. .+++.+|.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~---~G~~~~~~lD~ 433 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ---QGGRSVSLLLG 433 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH---HCSSCEEEEEH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc---cCCceEEEECc
Confidence 4478899999999999999999999873 11 26667763
No 326
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.30 E-value=0.026 Score=54.27 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=23.9
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
|..+.|.|++|+|||++++.|++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 457899999999999999999999843
No 327
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.25 E-value=0.12 Score=56.03 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=23.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
-.+.++||+|+|||+++++|+..+..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 57889999999999999999987643
No 328
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.21 E-value=0.11 Score=62.42 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=22.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
-.+.++||+|+|||+++++|+..+.
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4678999999999999999998764
No 329
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.14 E-value=0.03 Score=51.49 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=23.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.|+||+|+|||++++.|...+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 58899999999999999999988654
No 330
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.14 E-value=0.12 Score=52.73 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=29.8
Q ss_pred CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633 237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM 277 (550)
Q Consensus 237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~ 277 (550)
.| ..+++.|+||+|||++|..+|..+.. ...+...|++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC
Confidence 44 68899999999999999999987754 3446666655
No 331
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.07 E-value=0.035 Score=52.12 Aligned_cols=26 Identities=19% Similarity=0.072 Sum_probs=24.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++.+.||+|+|||++|+.||+.|+-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 48899999999999999999999865
No 332
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.05 E-value=0.049 Score=54.84 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=29.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG 278 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s 278 (550)
..++++|+||+|||++|..+|..... ...+.+.+++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~---~g~~vl~~slE 105 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSD---NDDVVNLHSLE 105 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHT---TTCEEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEECC
Confidence 68899999999999999999976654 33567777654
No 333
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.04 E-value=0.025 Score=54.60 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||+|.++|+..+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 58899999999999999999976643
No 334
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.04 E-value=0.019 Score=52.67 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=23.0
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.+.++||||+|||++++.|+..+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 6789999999999999999999865
No 335
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.94 E-value=0.042 Score=59.18 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=24.3
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
+.++.|.|++|+|||++|++||+.|.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHH
Confidence 37899999999999999999999996
No 336
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.94 E-value=0.33 Score=47.04 Aligned_cols=18 Identities=28% Similarity=0.074 Sum_probs=15.2
Q ss_pred eEEEeccCCCcHHHHHHH
Q 036633 240 LFLFAGPNCSGKAELAKA 257 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~ 257 (550)
.+++.+|||+|||..+-.
T Consensus 93 ~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 93 DLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCEECCCTTSCHHHHHHH
T ss_pred cEEEEccCCCCchHHHHH
Confidence 689999999999987543
No 337
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.91 E-value=0.025 Score=54.06 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+..+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5788999999999999999997654
No 338
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.89 E-value=0.035 Score=51.13 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..++++||+|+|||+|.+.++...+.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 57899999999999999999986653
No 339
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.86 E-value=0.42 Score=48.43 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=23.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.|+||||+|||++.++|+..+..
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 68899999999999999999988753
No 340
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.84 E-value=0.044 Score=49.03 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHH
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
++..++++|++|+|||++...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4478999999999999999998754
No 341
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.80 E-value=0.038 Score=50.40 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++++|++|+|||++...+...-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 789999999999999999998654
No 342
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.79 E-value=0.032 Score=54.05 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.+.||+|+|||+|.++|+..+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 57889999999999999999987643
No 343
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.74 E-value=0.03 Score=54.04 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|.++|+..+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999998764
No 344
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.74 E-value=0.043 Score=48.91 Aligned_cols=27 Identities=44% Similarity=0.511 Sum_probs=24.5
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
|+..+++||+|+|||++..+|.-.+++
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 478899999999999999999988876
No 345
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.70 E-value=0.03 Score=54.89 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.+.||+|+|||+|.++|+..+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57889999999999999999977643
No 346
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.68 E-value=0.35 Score=48.26 Aligned_cols=89 Identities=12% Similarity=0.158 Sum_probs=51.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccC-----C-----------CC-CCceeEEecCCCCchh---hhh-hHHhHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDN-----N-----------DN-DNHLIHFDMGNYTELE---SIK-HFFDSLAALV 297 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~-----~-----------~~-~~~li~id~s~~~~~~---~~s-~liG~lt~al 297 (550)
+-+.++|+||+|||+|..+|...-+.. + .. ...++-+|...+.... ... .+.......+
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 999999999999999999887543210 0 01 3345556766654322 111 1111333444
Q ss_pred HhCCCCeEEeccccccCHHHHHHHHHhhhh
Q 036633 298 KKRPYSVVLFDKIEKANSSILNLLLKILKT 327 (550)
Q Consensus 298 ~~~p~~VlllDEIeka~~~v~~~Ll~~ld~ 327 (550)
+..-.-++++|=-+...+.-...+++.+..
T Consensus 91 ~~aD~il~VvD~~~~~~~~~~~~~~~~l~~ 120 (308)
T 3iev_A 91 EEADVILFMIDATEGWRPRDEEIYQNFIKP 120 (308)
T ss_dssp HHCSEEEEEEETTTBSCHHHHHHHHHHTGG
T ss_pred hcCCEEEEEEeCCCCCCchhHHHHHHHHHh
Confidence 554444666776566666666654655544
No 347
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.64 E-value=0.037 Score=54.55 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=22.1
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
++.++||+|+|||++.++|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6789999999999999999988754
No 348
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.64 E-value=0.027 Score=53.30 Aligned_cols=23 Identities=39% Similarity=0.384 Sum_probs=21.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..+.++||+|+|||+|.++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47889999999999999999987
No 349
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.63 E-value=0.17 Score=53.13 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=15.2
Q ss_pred eeEEEeccCCCcHHHHH
Q 036633 239 GLFLFAGPNCSGKAELA 255 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lA 255 (550)
.++++.||||+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 37899999999999976
No 350
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.57 E-value=0.019 Score=55.96 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=23.8
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
+|..+.|.|++|+|||++|+.|++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 446789999999999999999999873
No 351
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.56 E-value=0.069 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=23.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.|.||+|+|||++++.|++.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 57789999999999999999999865
No 352
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.54 E-value=0.045 Score=49.01 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||++...+...-+
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~ 33 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKY 33 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcC
Confidence 7899999999999999998876543
No 353
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.52 E-value=0.043 Score=59.71 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=24.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++.|+||+|+|||+++++|+..+..
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcc
Confidence 68899999999999999999999864
No 354
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.48 E-value=0.14 Score=48.09 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=24.3
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+..++++|++|||||+++..++..++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 368899999999999999999998876
No 355
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.46 E-value=0.04 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..++|.||||+|||++|..+.+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 47899999999999999999874
No 356
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.44 E-value=0.21 Score=57.68 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
..++++||+|+|||++.++++-
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999954
No 357
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.44 E-value=0.037 Score=53.54 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||+|.++|+..+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57889999999999999999977643
No 358
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.41 E-value=1.4 Score=45.11 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=31.1
Q ss_pred CeeEEEe-ccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 238 LGLFLFA-GPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 238 p~~lLf~-Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
+.++.++ |-.|||||++|-.+|..+.. ...+.+-+|+...
T Consensus 143 ~kvIav~s~KGGvGKTT~a~nLA~~La~---~g~rVlliD~D~~ 183 (373)
T 3fkq_A 143 SSVVIFTSPCGGVGTSTVAAACAIAHAN---MGKKVFYLNIEQC 183 (373)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHH---HTCCEEEEECCTT
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHh---CCCCEEEEECCCC
Confidence 3566665 58899999999999998866 4558889998833
No 359
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.40 E-value=0.043 Score=53.95 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.++||+|+|||+|.++|+..+
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 588999999999999999999763
No 360
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.34 E-value=0.038 Score=54.27 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||+|.++|+..+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 58899999999999999999977643
No 361
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.33 E-value=0.044 Score=53.30 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=21.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..+.+.||+|+|||+|.++|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999975
No 362
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.32 E-value=0.29 Score=47.18 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
..++|+|+||+|||++..+|..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 7899999999999999998864
No 363
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.32 E-value=0.18 Score=51.14 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=23.7
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+..+.++|+||+|||+++..|+..+..
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 368899999999999999999987753
No 364
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.29 E-value=0.035 Score=54.26 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=22.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|.++|+..+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5788999999999999999997664
No 365
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.29 E-value=0.14 Score=53.01 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..++++||||+|||++++.|++.+..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhh
Confidence 68899999999999999999998743
No 366
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.26 E-value=0.059 Score=51.57 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.9
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
++..+.|.|++|+|||++++.|++.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346788999999999999999999874
No 367
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.26 E-value=0.057 Score=51.94 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+-|.||||+|||++|+.|++.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 5678999999999999999999873
No 368
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.24 E-value=0.052 Score=52.45 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=24.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.|.||+|+|||++++.|++.+..
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 67889999999999999999999865
No 369
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.23 E-value=0.051 Score=50.75 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=23.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..++|+|++|+|||++...+....+.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~~ 38 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSVR 38 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 78999999999999999999876544
No 370
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.22 E-value=0.045 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++++|++|+|||++...+...-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 678999999999999999987543
No 371
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.17 E-value=0.038 Score=52.56 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=22.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+..+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5788999999999999999997653
No 372
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.17 E-value=0.064 Score=47.91 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=22.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||++.+.+...-+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~ 34 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYF 34 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC
Confidence 7899999999999999999987543
No 373
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.16 E-value=0.041 Score=53.16 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+..+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5788999999999999999997664
No 374
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.16 E-value=0.042 Score=54.17 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||+|.++|+..+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57889999999999999999987643
No 375
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.16 E-value=0.047 Score=50.37 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=22.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++||+|+|||+|.+.+....+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999997654
No 376
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.15 E-value=0.046 Score=56.13 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=23.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||+|++.|+..+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999998744
No 377
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.14 E-value=0.043 Score=53.76 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.++||+|+|||+|.++|+..+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 588999999999999999999754
No 378
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.13 E-value=0.085 Score=57.34 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=28.7
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD 276 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id 276 (550)
+..++|+|++|+|||++|+.|++.+.. ...++..+|
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~---~G~~~~~ld 407 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQA---RGRKVTLLD 407 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEC
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhh---cCCeEEEEC
Confidence 468899999999999999999998865 233455555
No 379
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.08 E-value=0.059 Score=48.83 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=20.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
..++|+|++|+|||+|.+.+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999985
No 380
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.02 E-value=0.045 Score=53.74 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|.++|+..+.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5788999999999999999997664
No 381
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.01 E-value=0.041 Score=52.76 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|.++|+..+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 5788999999999999999998764
No 382
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.98 E-value=0.045 Score=53.27 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.+.||+|+|||+|.++|+..+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 57889999999999999999977643
No 383
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.94 E-value=0.066 Score=56.08 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=22.4
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHh
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
++.+.|+||+|+|||++.++|+...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3789999999999999999999754
No 384
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.93 E-value=0.059 Score=47.50 Aligned_cols=25 Identities=12% Similarity=0.325 Sum_probs=21.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||++.+.+...-+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC
Confidence 6789999999999999999986543
No 385
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.92 E-value=0.053 Score=52.07 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=20.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.|.||+|+|||++++.|++.+..
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999854
No 386
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.91 E-value=0.042 Score=54.41 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.++||+|+|||+|.++|+..+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 57889999999999999999977643
No 387
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.87 E-value=0.27 Score=56.60 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..++++||+|+|||++.++++-.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHH
Confidence 47899999999999999998754
No 388
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.83 E-value=0.059 Score=48.09 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..++++|++|+|||+|.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999753
No 389
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.81 E-value=0.08 Score=54.76 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=30.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG 278 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s 278 (550)
++++++||||+|||++++.+...+.. ....++.+|..
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~---~~~~~~~~D~~ 72 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYM---QGSRVIIIDPE 72 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEESS
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHH---CCCEEEEEeCC
Confidence 68999999999999999999887765 44566777753
No 390
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.81 E-value=0.068 Score=50.13 Aligned_cols=27 Identities=44% Similarity=0.511 Sum_probs=24.9
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
|+..+++||+|+|||++..+|.-.+++
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 478899999999999999999988887
No 391
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.76 E-value=0.077 Score=58.66 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=20.3
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++.||||||||+++..+...+.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999998877776654
No 392
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.74 E-value=0.058 Score=48.17 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=21.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++++|++|+|||++...+...-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 789999999999999999987543
No 393
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.74 E-value=0.047 Score=49.70 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.2
Q ss_pred eEEEeccCCCcHHHHHHHHHH
Q 036633 240 LFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~ 260 (550)
.++++|++|||||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999875
No 394
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.73 E-value=0.073 Score=50.67 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.|.||+|+|||+.++.|++.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57889999999999999999999853
No 395
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.69 E-value=0.071 Score=46.70 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.8
Q ss_pred eEEEeccCCCcHHHHHHHHHHH
Q 036633 240 LFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
.++++|++|+|||++...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 396
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=92.69 E-value=0.2 Score=49.24 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=32.0
Q ss_pred eeEEEecc-CCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 239 GLFLFAGP-NCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 239 ~~lLf~Gp-~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
.+++|+|+ +|+|||++|-.||..+-. .....+-+|+...
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~---~G~rVLLID~D~~ 122 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQ---AGYKTLIVDGDMR 122 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCSS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHh---CCCeEEEEeCCCC
Confidence 68888877 799999999999998876 5567888887643
No 397
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.66 E-value=0.052 Score=52.94 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=22.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.+.||+|+|||+|.++|+..+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 57889999999999999999987643
No 398
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.60 E-value=0.078 Score=50.69 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=24.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++.+.|++|+|||++|+.||+.+.-
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~ 40 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGI 40 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence 58899999999999999999999855
No 399
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.59 E-value=0.072 Score=47.69 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||++...+...-+
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC
Confidence 7899999999999999999876543
No 400
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.57 E-value=0.074 Score=48.26 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.4
Q ss_pred CCCeeEEEeccCCCcHHHHHHHHHH
Q 036633 236 RQLGLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 236 ~~p~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
.++..++++|++|||||++.+.+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3447899999999999999988864
No 401
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.55 E-value=0.066 Score=47.86 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
..++++|++|+|||++...+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 7899999999999999988863
No 402
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.53 E-value=0.091 Score=52.54 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=20.3
Q ss_pred eEEEeccCCCcHHHHHHHHHHHh
Q 036633 240 LFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
.+.|.||||+|||+|.++|+ .+
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 78999999999999999999 54
No 403
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.52 E-value=0.071 Score=48.43 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||+++..+...-+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~ 46 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF 46 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC
Confidence 6789999999999999999986543
No 404
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.52 E-value=0.071 Score=47.42 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..++++|++|||||+|.+.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 67999999999999999988643
No 405
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.49 E-value=0.089 Score=47.38 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=23.2
Q ss_pred CCC-eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 236 RQL-GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 236 ~~p-~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
+.+ ..++|+|++|+|||++...+....+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~ 43 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIF 43 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 344 7889999999999999999886544
No 406
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.48 E-value=0.073 Score=46.55 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||++...+...-+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~ 28 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF 28 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC
Confidence 4689999999999999999986544
No 407
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.46 E-value=0.08 Score=47.54 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||+|.+.+...-+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~ 43 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEF 43 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC
Confidence 7899999999999999999886443
No 408
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.44 E-value=0.17 Score=56.32 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=24.7
Q ss_pred HHHHHHHhCCC--CeEEecccc-ccCHHHHHHHHHhhh
Q 036633 292 SLAALVKKRPY--SVVLFDKIE-KANSSILNLLLKILK 326 (550)
Q Consensus 292 ~lt~al~~~p~--~VlllDEIe-ka~~~v~~~Ll~~ld 326 (550)
.+..++-..|. .++++||-- -+++.....+++++.
T Consensus 553 ~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~ 590 (670)
T 3ux8_A 553 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLH 590 (670)
T ss_dssp HHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 66777777664 599999975 457766666666654
No 409
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=92.44 E-value=0.16 Score=52.51 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=29.7
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM 277 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~ 277 (550)
.+++.|..|||||++|-.+|..+.. .....+-+|+
T Consensus 4 i~~~~gkGG~GKTt~a~~la~~la~---~g~~vllvd~ 38 (374)
T 3igf_A 4 ILTFLGKSGVARTKIAIAAAKLLAS---QGKRVLLAGL 38 (374)
T ss_dssp EEEEECSBHHHHHHHHHHHHHHHHH---TTCCEEEEEC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH---CCCCeEEEeC
Confidence 6789999999999999999998876 5556777777
No 410
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.39 E-value=0.057 Score=53.00 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=22.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.+.||+|+|||+|.++|+..+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999876
No 411
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.35 E-value=0.079 Score=46.44 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||++...+...-+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~ 28 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTF 28 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5789999999999999998876543
No 412
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.32 E-value=0.07 Score=55.47 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=21.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.|+||+|+|||++.++|+..+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 588999999999999999999765
No 413
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.28 E-value=0.085 Score=48.55 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||+|...+...-+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~ 33 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKF 33 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC
Confidence 7899999999999999999876543
No 414
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.27 E-value=0.051 Score=51.88 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=21.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..+.|.||+|+|||++++.|+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 67889999999999999999986
No 415
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.26 E-value=0.067 Score=48.12 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=20.6
Q ss_pred CCCeeEEEeccCCCcHHHHHHHHH
Q 036633 236 RQLGLFLFAGPNCSGKAELAKAIA 259 (550)
Q Consensus 236 ~~p~~lLf~Gp~GvGKT~lAk~la 259 (550)
.++..++++|++|+|||++...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 344899999999999999998775
No 416
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.20 E-value=0.1 Score=47.12 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||+|...+...-+
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~ 36 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKF 36 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999986443
No 417
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.19 E-value=0.093 Score=46.03 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||++.+.+...-+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~ 29 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc
Confidence 6789999999999999999886443
No 418
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.17 E-value=0.082 Score=46.57 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=21.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||++...+...-+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999876543
No 419
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.15 E-value=0.84 Score=51.64 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=17.4
Q ss_pred eeEEEeccCCCcHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIA 259 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la 259 (550)
.++++.||||+|||++...+.
T Consensus 110 ~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 389999999999999666553
No 420
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.13 E-value=0.091 Score=46.92 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++++|++|+|||++...+...-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 789999999999999999987543
No 421
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.11 E-value=0.062 Score=57.15 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.++||+|+|||+|+++|+..+.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CEEEEECCCCCCHHHHHHHHhCccc
Confidence 5889999999999999999998763
No 422
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.10 E-value=0.086 Score=54.25 Aligned_cols=26 Identities=38% Similarity=0.690 Sum_probs=24.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
+.++++||+|+|||++..+|+-.+++
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~al~g 49 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFALFG 49 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 68889999999999999999999887
No 423
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.10 E-value=0.092 Score=47.79 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..++++|++|+|||++...+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999999999998743
No 424
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.08 E-value=0.11 Score=46.03 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=22.0
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
+..++++|++|+|||++...+...-+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~ 32 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEV 32 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC
Confidence 37899999999999999999975443
No 425
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.06 E-value=0.088 Score=48.15 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=21.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||++...+...-+
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~ 48 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHF 48 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 6899999999999999999876543
No 426
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.05 E-value=0.87 Score=46.35 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=16.3
Q ss_pred eEEEeccCCCcHHHHHHHHH
Q 036633 240 LFLFAGPNCSGKAELAKAIA 259 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la 259 (550)
.+++.+|||+|||..+-..+
T Consensus 60 ~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 60 DILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHH
Confidence 58999999999998765444
No 427
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.04 E-value=0.39 Score=53.64 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=16.6
Q ss_pred eeEEEeccCCCcHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKA 257 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~ 257 (550)
.+++++||||+|||+.+-.
T Consensus 47 ~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHH
Confidence 4899999999999998843
No 428
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.04 E-value=0.23 Score=49.53 Aligned_cols=38 Identities=18% Similarity=0.376 Sum_probs=31.5
Q ss_pred eeEEEecc-CCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633 239 GLFLFAGP-NCSGKAELAKAIANELYDNNDNDNHLIHFDMGN 279 (550)
Q Consensus 239 ~~lLf~Gp-~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~ 279 (550)
.+++|+|+ +|+|||++|..||..+-. .....+-+|+..
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~---~G~rVLLID~D~ 143 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQ---SDQKVLFIDADL 143 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHH---TTCCEEEEECCT
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHh---CCCcEEEEECCC
Confidence 68888887 799999999999998876 556788888764
No 429
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.02 E-value=0.1 Score=47.85 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++|+|++|+|||+|...+...-+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~ 39 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEF 39 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC
Confidence 7899999999999999999876543
No 430
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.01 E-value=0.071 Score=53.12 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..+.+.||+|+|||+|.++|+..+.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5889999999999999999998764
No 431
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.00 E-value=0.085 Score=50.03 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=23.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.-+.|.|++|+|||+.++.|++.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999866
No 432
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.00 E-value=0.15 Score=53.69 Aligned_cols=24 Identities=38% Similarity=0.279 Sum_probs=20.5
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
.++++||+|+|||.++-.++..+.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~ 133 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELS 133 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcC
Confidence 589999999999999887776663
No 433
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.98 E-value=0.088 Score=47.72 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|||||++.+.+...-+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7889999999999999999987544
No 434
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.96 E-value=0.082 Score=46.76 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.8
Q ss_pred eEEEeccCCCcHHHHHHHHHH
Q 036633 240 LFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~ 260 (550)
.++++|++|||||++...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999999863
No 435
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.95 E-value=0.089 Score=47.42 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..++|+|+||+|||+|.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 436
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.92 E-value=0.1 Score=46.74 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.0
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHH
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
+..++++|++|+|||++...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999888754
No 437
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.92 E-value=0.095 Score=46.22 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=21.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||++.+.+...-+
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~ 31 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSF 31 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC
Confidence 6899999999999999999886543
No 438
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.92 E-value=0.091 Score=48.14 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.9
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHH
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
+..++++|++|||||++.+.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 378999999999999999998864
No 439
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.89 E-value=0.087 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..++++|++|+|||++...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999998754
No 440
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.89 E-value=0.078 Score=46.74 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=21.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++++|++|+|||++...+...-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 688999999999999999988643
No 441
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.88 E-value=0.1 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.8
Q ss_pred eEEEeccCCCcHHHHHHHHHHHh
Q 036633 240 LFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
.+.|.||||+|||+|.++|+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 78899999999999999998654
No 442
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.87 E-value=0.089 Score=46.39 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=18.6
Q ss_pred eeEEEeccCCCcHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIA 259 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la 259 (550)
..++++|++|+|||++.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999998875
No 443
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=91.85 E-value=0.32 Score=51.28 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=17.0
Q ss_pred eeEEEeccCCCcHHH--HHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAE--LAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~--lAk~la~~ 261 (550)
.++++.||||+|||. +.-++...
T Consensus 20 ~~~lv~a~TGsGKT~~~~~~~l~~~ 44 (451)
T 2jlq_A 20 RLTIMDLHPGAGKTKRILPSIVREA 44 (451)
T ss_dssp CEEEECCCTTSSCCTTHHHHHHHHH
T ss_pred CeEEEECCCCCCHhhHHHHHHHHHH
Confidence 477999999999998 44444443
No 444
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.84 E-value=0.45 Score=48.56 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=15.8
Q ss_pred eeEEEeccCCCcHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAK 256 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk 256 (550)
..+++.+|||+|||..+-
T Consensus 65 ~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 65 QNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCchHHHHHH
Confidence 588999999999999763
No 445
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.82 E-value=0.087 Score=47.83 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||+|...+...-+
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~ 40 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTF 40 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 7899999999999999999976543
No 446
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.81 E-value=0.1 Score=47.60 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=21.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++|+|++|+|||+|...+...-+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 6889999999999999999886544
No 447
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.80 E-value=0.11 Score=47.15 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..++++|++|+|||++...+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999988654
No 448
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.77 E-value=0.12 Score=45.33 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.2
Q ss_pred eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 240 LFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.++++|++|||||++...+...-+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~ 26 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC
Confidence 4789999999999999999765544
No 449
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.76 E-value=0.098 Score=48.61 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.5
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..++++|++|||||+|...+...-+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~~~ 33 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQYR 33 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 68999999999999999999865543
No 450
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.76 E-value=0.091 Score=47.34 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=21.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++|+|++|+|||++...+...-+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~ 29 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF 29 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC
Confidence 6789999999999999999986543
No 451
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.75 E-value=0.13 Score=46.75 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=22.4
Q ss_pred CeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 238 LGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
+..++++|++|+|||+|...+...-+
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC
Confidence 37899999999999999999986543
No 452
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=91.73 E-value=0.78 Score=43.51 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=14.7
Q ss_pred eEEEeccCCCcHHHHHH
Q 036633 240 LFLFAGPNCSGKAELAK 256 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk 256 (550)
.+++.+|||+|||..+-
T Consensus 68 ~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred CEEEECCCCCcHHHHHH
Confidence 68999999999998643
No 453
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.71 E-value=0.097 Score=46.02 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||++.+.+...-+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~ 28 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF 28 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4789999999999999999986433
No 454
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.71 E-value=1.1 Score=45.04 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=17.2
Q ss_pred eeEEEeccCCCcHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIA 259 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la 259 (550)
..+++.+|||+|||..+-..+
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 588999999999999765433
No 455
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.71 E-value=0.1 Score=46.05 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++++|++|+|||++.+.+...-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 689999999999999999988653
No 456
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.66 E-value=0.1 Score=49.84 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++|+|++|+|||++..+|...-
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 789999999999999999987543
No 457
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.66 E-value=0.1 Score=46.11 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=20.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..++++|++|+|||++...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999998753
No 458
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.64 E-value=0.09 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.|+||||+|||+|.++|+..+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 478999999999999999998544
No 459
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.62 E-value=0.13 Score=46.91 Aligned_cols=25 Identities=24% Similarity=0.196 Sum_probs=21.7
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++|+|++|||||+|...+....+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999988876544
No 460
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.57 E-value=0.16 Score=54.79 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=27.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM 277 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~ 277 (550)
.++++.||||+|||++++.++..+.. ...+.+.+..
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~~vi~~~~ 317 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACA---NKERAILFAY 317 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHT---TTCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh---CCCCEEEEEE
Confidence 68899999999999999999987654 3334555554
No 461
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.54 E-value=0.13 Score=52.43 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.|+||||+|||++.+.|...+..
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 78999999999999999999987643
No 462
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.47 E-value=0.097 Score=47.00 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++|+|++|+|||+|...+...-
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 689999999999999999987543
No 463
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.44 E-value=0.07 Score=49.40 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.++||+|+|||+|.+.|+...
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999886443
No 464
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.39 E-value=0.13 Score=46.29 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||++.+.+...-+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 7899999999999999999876544
No 465
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.33 E-value=0.14 Score=46.71 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=21.8
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||+|...+...-+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~ 33 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTF 33 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Confidence 7899999999999999999986433
No 466
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.33 E-value=0.16 Score=54.49 Aligned_cols=38 Identities=3% Similarity=-0.073 Sum_probs=30.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEEecCC
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHFDMGN 279 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~id~s~ 279 (550)
..+++.|+||+|||++|..+|..+-. . ..+.+.+++.+
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~---~~g~~vl~~s~E~ 281 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGT---AMGKKVGLAMLEE 281 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTT---TSCCCEEEEESSS
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHH---hcCCcEEEEeccC
Confidence 68899999999999999999988754 3 34677776543
No 467
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=91.32 E-value=0.91 Score=45.89 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=15.1
Q ss_pred eEEEeccCCCcHHHHHHH
Q 036633 240 LFLFAGPNCSGKAELAKA 257 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~ 257 (550)
.+++.+|||+|||..+-.
T Consensus 60 ~~lv~~~TGsGKT~~~~~ 77 (394)
T 1fuu_A 60 DVLAQAQSGTGKTGTFSI 77 (394)
T ss_dssp CEEECCCSSHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHH
Confidence 689999999999987543
No 468
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.30 E-value=0.11 Score=47.26 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++|+|++|||||+|...+...-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 789999999999999999886443
No 469
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.30 E-value=0.56 Score=50.15 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=18.3
Q ss_pred eeEEEeccCCCcHHHHHHH-HHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKA-IANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~-la~~l 262 (550)
..+++.+|||+|||..+-. +...+
T Consensus 159 ~~~ll~apTGsGKT~~~~~~il~~l 183 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALTMLSRV 183 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHHHHHHS
T ss_pred CCEEEECCCCccHHHHHHHHHHHHH
Confidence 5899999999999997543 34443
No 470
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.30 E-value=0.11 Score=47.87 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.2
Q ss_pred CCeeEEEeccCCCcHHHHHHHHH
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIA 259 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la 259 (550)
++..++++|++|+|||++.+.+.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34788999999999999999885
No 471
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.29 E-value=0.12 Score=47.51 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++|+|++|||||+|...+...-+
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC
Confidence 7899999999999999999987544
No 472
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.27 E-value=0.11 Score=46.47 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.2
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++++|++|+|||++...+...-
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 689999999999999999987643
No 473
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.24 E-value=0.2 Score=55.80 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=15.8
Q ss_pred eeEEEeccCCCcHHHHH
Q 036633 239 GLFLFAGPNCSGKAELA 255 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lA 255 (550)
..+.++||+|+|||||+
T Consensus 45 e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 45 KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHh
Confidence 57899999999999996
No 474
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.18 E-value=0.35 Score=47.89 Aligned_cols=40 Identities=10% Similarity=0.205 Sum_probs=31.5
Q ss_pred CeeEEEecc-CCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633 238 LGLFLFAGP-NCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY 280 (550)
Q Consensus 238 p~~lLf~Gp-~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~ 280 (550)
+.+++|+|+ +|+|||++|-.||..+-. .....+-+|+...
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA~---~G~rVLLID~D~~ 132 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVISQ---TNKRVLLIDCDMR 132 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHHT---TTCCEEEEECCTT
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHh---CCCCEEEEeccCC
Confidence 356666665 799999999999999876 5567888887654
No 475
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=91.16 E-value=0.76 Score=54.12 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=17.1
Q ss_pred eeEEEeccCCCcHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIA 259 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la 259 (550)
..++++||||+|||..+-..+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i 220 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAI 220 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHH
Confidence 378999999999999875433
No 476
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=91.12 E-value=0.57 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=18.4
Q ss_pred eeEEEeccCCCcHHHHH-HHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELA-KAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lA-k~la~~l 262 (550)
.+++++||||+|||..+ -.+.+.+
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~ 64 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRI 64 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHH
Confidence 48999999999999987 3343333
No 477
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.12 E-value=0.12 Score=46.29 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=22.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|||||++...+...-+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 7899999999999999999887544
No 478
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.10 E-value=0.13 Score=45.76 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||++.+.+...-+
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~ 40 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKF 40 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 6899999999999999999986544
No 479
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=91.07 E-value=0.14 Score=52.07 Aligned_cols=28 Identities=43% Similarity=0.510 Sum_probs=24.6
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
.|+..+|+||+|+|||++..+|.-.+++
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~~l~~ 49 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILVGLYW 49 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3578899999999999999999877765
No 480
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.99 E-value=0.14 Score=46.81 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|||||+|...+...-+
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~ 53 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRF 53 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 7899999999999999999886533
No 481
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.99 E-value=0.14 Score=47.75 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|||||+|.+.+...-+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6899999999999999999987544
No 482
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.99 E-value=0.15 Score=48.98 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 237 QLGLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
++..+++.|.+|||||+++..|+..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 347889999999999999999998875
No 483
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.99 E-value=0.14 Score=46.99 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++++|++|+|||+|...+...-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 789999999999999999987644
No 484
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.96 E-value=0.12 Score=46.72 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++++|++|||||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 789999999999999998887654
No 485
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.95 E-value=0.15 Score=46.37 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=21.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++|+|++|+|||+|...+...-+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~ 45 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRF 45 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC
Confidence 6899999999999999999875443
No 486
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.93 E-value=0.12 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.9
Q ss_pred eEEEeccCCCcHHHHHHHHHHHh
Q 036633 240 LFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
.++++|++|+|||++...+...-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 57899999999999999987543
No 487
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.90 E-value=0.11 Score=47.88 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.2
Q ss_pred eeEEEeccCCCcHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIA 259 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la 259 (550)
..++|+|++|||||+|.+.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 678999999999999999885
No 488
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.77 E-value=0.13 Score=46.05 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=21.4
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|+|||++...+...-+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~ 30 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF 30 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5789999999999999999876443
No 489
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=90.71 E-value=1.2 Score=51.93 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=16.1
Q ss_pred eEEEeccCCCcHHHHHHH
Q 036633 240 LFLFAGPNCSGKAELAKA 257 (550)
Q Consensus 240 ~lLf~Gp~GvGKT~lAk~ 257 (550)
++++++|||+|||.++..
T Consensus 103 ~vLV~apTGSGKTlva~l 120 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEY 120 (1010)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred CEEEECCCCCChHHHHHH
Confidence 799999999999998754
No 490
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.70 E-value=0.11 Score=52.19 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++++||+|+|||++.+.|....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 588999999999999999999765
No 491
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.70 E-value=0.13 Score=52.49 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=23.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYD 264 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~ 264 (550)
..+.|.||+|+|||+|.+.|+..+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 68999999999999999999998754
No 492
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.69 E-value=0.21 Score=45.41 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..++++|++|+|||+|...+...-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 678999999999999999987643
No 493
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=90.68 E-value=0.76 Score=45.58 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=15.2
Q ss_pred eeEEEeccCCCcHHHHH
Q 036633 239 GLFLFAGPNCSGKAELA 255 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lA 255 (550)
..+++.+|||+|||...
T Consensus 132 ~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 132 QNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCccHHH
Confidence 58999999999999864
No 494
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.67 E-value=0.13 Score=50.14 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.1
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHh
Q 036633 239 GLFLFAGPNCSGKAELAKAIANEL 262 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l 262 (550)
..+.|+|+||+|||++..++....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999997654
No 495
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.67 E-value=0.16 Score=46.25 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|||||+|...+...-+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCC
Confidence 6799999999999999988876543
No 496
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.63 E-value=0.14 Score=46.78 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=22.0
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELY 263 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~ 263 (550)
..++++|++|||||++...+...-+
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999886544
No 497
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=90.63 E-value=0.22 Score=58.08 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.6
Q ss_pred eeEEEeccCCCcHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
..++++||+|+|||++.++++-
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5789999999999999999843
No 498
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.62 E-value=0.15 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.5
Q ss_pred CeeEEEeccCCCcHHHHHHHHHH
Q 036633 238 LGLFLFAGPNCSGKAELAKAIAN 260 (550)
Q Consensus 238 p~~lLf~Gp~GvGKT~lAk~la~ 260 (550)
+..++++|++|+|||++...+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 37899999999999999988864
No 499
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.62 E-value=0.12 Score=51.66 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=19.9
Q ss_pred eeEEEeccCCCcHHHHHHHHHHH
Q 036633 239 GLFLFAGPNCSGKAELAKAIANE 261 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~ 261 (550)
..++++||+|+|||+|.+.|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 57799999999999999998754
No 500
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.61 E-value=0.16 Score=53.18 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=29.3
Q ss_pred eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633 239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM 277 (550)
Q Consensus 239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~ 277 (550)
.+++++||||+|||++++.+...+.. ...+++.+|.
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~---~g~~viv~Dp 89 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLL---RGDRMVIVDP 89 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH---TTCEEEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEeC
Confidence 79999999999999998877766655 4457888885
Done!