BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036635
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/570 (65%), Positives = 426/570 (74%), Gaps = 15/570 (2%)
Query: 1 MMYKDPKQPVEVRVKDLLSRMTLAEKIGQMTQIERVNATFDAMKNYFIXXXXXXXXXXXX 60
++YKD +PVE RV DLL RMTLAEKIGQMTQIER+ AT D +++ FI
Sbjct: 3 VLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPR 62
Query: 61 XNATAQQWIDMVNDIQRGAMATRLGIPMIYGVDAVHGHNNVYKATIFPHNVGLGATRDPN 120
ATA++W DMV+ Q+ M+TRLGIPMIYG+DAVHG NNVY ATIFPHNVGLGATRDP
Sbjct: 63 KGATAKEWQDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPY 122
Query: 121 LVKRIGAATALEVRATGIPYAFAPCIAVCRDPRWGRCYESYSEDAKLVQQFSVIISGLQG 180
LVKRIG ATALEVRATGI YAFAPCIAVCRDPRWGRCYESYSED ++VQ + +I GLQG
Sbjct: 123 LVKRIGEATALEVRATGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQG 182
Query: 181 DAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTVNGINENNTIVTTEQLFDIHMPPYWSA 240
D P K G PFV GK+KVAACAKH+VGDGGTV+GINENNTI+ E L +IHMP Y +A
Sbjct: 183 DVP-KDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKNA 241
Query: 241 LDQRVSTVMISYSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYT 300
+D+ VSTVMISYSS NG KMHAN++LVT YLK+ LKFKGF ISDWEGIDRIT+P S+Y+
Sbjct: 242 MDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYS 301
Query: 301 YSVQESVLAGLDMIMVPYLYPEFINILTDLVNKKVIPMRRINDAVKRILRVKFEMGLFEN 360
YSV+ S+LAGLDMIMVP Y +FI+ILT VN VIPM RI+DAV RILRVKF MGLFEN
Sbjct: 302 YSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFEN 361
Query: 361 PYADNSFVNKLGCKEHRELAREAQQSXXXXXXXXXXXXXX-------------VAGTHAD 407
PYAD + +LG +EHR+LAREA + VAG+HAD
Sbjct: 362 PYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPKKAPKILVAGSHAD 421
Query: 408 NLGYQCGGWTIEWQGDSGNNYTEGTTILRAINATVDPSTQVVFSERPDYNFVKDNNFSIG 467
NLGYQCGGWTIEWQGD+G T GTTIL A+ A VDPST VVF+E PD FVK FS
Sbjct: 422 NLGYQCGGWTIEWQGDTGRT-TVGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYA 480
Query: 468 IVVVGEVPYAETKGDNTNLTLPWPAPDIINNVCKATKCVVVLVSGRPLVIEPYVEAMDAL 527
IV VGE PY ETKGDN NLT+P P + VC +C VL+SGRP+V++P + A DAL
Sbjct: 481 IVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDAL 540
Query: 528 VAAWLPGSEGQGVADALFGDSPFTGKLSRT 557
VAAWLPGSEGQGV DALFGD FTG+L RT
Sbjct: 541 VAAWLPGSEGQGVTDALFGDFGFTGRLPRT 570
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/570 (65%), Positives = 426/570 (74%), Gaps = 15/570 (2%)
Query: 1 MMYKDPKQPVEVRVKDLLSRMTLAEKIGQMTQIERVNATFDAMKNYFIXXXXXXXXXXXX 60
++YKD +PVE RV DLL RMTLAEKIGQMTQIER+ AT D +++ FI
Sbjct: 3 VLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPR 62
Query: 61 XNATAQQWIDMVNDIQRGAMATRLGIPMIYGVDAVHGHNNVYKATIFPHNVGLGATRDPN 120
ATA++W DMV+ Q+ M+TRLGIPMIYG+DAVHG NNVY ATIFPHNVGLGATRDP
Sbjct: 63 KGATAKEWQDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPY 122
Query: 121 LVKRIGAATALEVRATGIPYAFAPCIAVCRDPRWGRCYESYSEDAKLVQQFSVIISGLQG 180
LVKRIG ATALEVRATGI YAFAPCIAVCRDPRWGRCYESYSED ++VQ + +I GLQG
Sbjct: 123 LVKRIGEATALEVRATGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQG 182
Query: 181 DAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTVNGINENNTIVTTEQLFDIHMPPYWSA 240
D P K G PFV GK+KVAACAKH+VGDGGTV+GINENNTI+ E L +IHMP Y +A
Sbjct: 183 DVP-KDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKNA 241
Query: 241 LDQRVSTVMISYSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYT 300
+D+ VSTVMISYSS NG KMHAN++LVT YLK+ LKFKGF ISDWEGIDRIT+P S+Y+
Sbjct: 242 MDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYS 301
Query: 301 YSVQESVLAGLDMIMVPYLYPEFINILTDLVNKKVIPMRRINDAVKRILRVKFEMGLFEN 360
YSV+ S+LAGLDMIMVP Y +FI+ILT VN VIPM RI+DAV RILRVKF MGLFEN
Sbjct: 302 YSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFEN 361
Query: 361 PYADNSFVNKLGCKEHRELAREAQQSXXXXXXXXXXXXXX-------------VAGTHAD 407
PYAD + +LG +EHR+LAREA + VAG+HAD
Sbjct: 362 PYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPKKAPKILVAGSHAD 421
Query: 408 NLGYQCGGWTIEWQGDSGNNYTEGTTILRAINATVDPSTQVVFSERPDYNFVKDNNFSIG 467
NLGYQCGGWTIEWQGD+G T GTTIL A+ A VDPST VVF+E PD FVK FS
Sbjct: 422 NLGYQCGGWTIEWQGDTGRT-TVGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYA 480
Query: 468 IVVVGEVPYAETKGDNTNLTLPWPAPDIINNVCKATKCVVVLVSGRPLVIEPYVEAMDAL 527
IV VGE PY ETKGDN NLT+P P + VC +C VL+SGRP+V++P + A DAL
Sbjct: 481 IVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDAL 540
Query: 528 VAAWLPGSEGQGVADALFGDSPFTGKLSRT 557
VAAWLPGSEGQGV DALFGD FTG+L RT
Sbjct: 541 VAAWLPGSEGQGVTDALFGDFGFTGRLPRT 570
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 230/591 (38%), Positives = 326/591 (55%), Gaps = 62/591 (10%)
Query: 2 MYKDPKQPVEVRVKDLLSRMTLAEKIGQMTQIERVNATFDAMKNYFIXXXXXXXXXXXXX 61
+ +DP VE +++ LL++MT+ +K+ QM Q E T + M+ Y
Sbjct: 16 LKRDP--AVEAQIEKLLAKMTIEQKVAQMIQPEIGYLTVEQMRKYGFGSYLNGGNTAPYG 73
Query: 62 NATAQQ--WIDMVNDIQRGAMATRL---GIPMIYGVDAVHGHNNVYKATIFPHNVGLGAT 116
N A Q W+ +++ AM + L IP ++G DA+HGH+NVY AT+FPHN+GLGA
Sbjct: 74 NKRADQATWLKYADEMYLAAMDSTLDGIAIPTVWGTDAMHGHSNVYGATLFPHNIGLGAA 133
Query: 117 RDPNLVKRIGAATALEVRATGIPYAFAPCIAVCRDPRWGRCYESYSEDAKLVQQFS-VII 175
RD +L+KRIG ATA EV ATGI ++FAP +AV RD RWGR YESYSED LV++++ ++
Sbjct: 134 RDTDLIKRIGQATAKEVAATGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMV 193
Query: 176 SGLQGDAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTVNGINENNTIVTTEQLFDIHMP 235
+G+QGD G F+ G +++ A AKH+VGDGGT G++ NT++ + L DIH
Sbjct: 194 TGIQGDV-------GADFLKGSNRI-ATAKHFVGDGGTERGVDRGNTLIDEKGLRDIHSA 245
Query: 236 PYWSALDQRVSTVMISYSSINGKKMHANKELVTEYLKEKLKFKGFTISDW------EGID 289
Y+SA++Q V +VM S++S NGK++H +K L+T+ LK +L F GF +SDW EG D
Sbjct: 246 GYFSAINQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFVEGCD 305
Query: 290 RITSPPHSNYTYSVQESVLAGLDMIMVPYLYPEFINILTDLVNKKVIPMRRINDAVKRIL 349
+++ AG+D+IMVP + F + V VI RINDAV+R L
Sbjct: 306 ----------LEQCAQAINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFL 355
Query: 350 RVKFEMGLF--ENPYA--DNSFVNKLGCKEHRELAREAQQSXXXXXXX-------XXXXX 398
R K G+F P A ++ LG EHR LAREA +
Sbjct: 356 RAKIRWGVFTKSKPSARPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNESILPIKASSR 415
Query: 399 XXVAGTHADNLGYQCGGWTIEWQG--DSGNNYTEGTTILRAINATVDPS-TQVVFSERPD 455
VAG A+ + Q GGW++ WQG ++ +++ T+I + + V + ++ SE +
Sbjct: 416 ILVAGKGANAINMQAGGWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGE 475
Query: 456 YNFVKDNNFSIGIVVVGEVPYAETKGDNTNLTLPWPAPDIINNVCKATKC-----VVVLV 510
Y D + IVV+GE PYAE GD L + + K K V V +
Sbjct: 476 YTSKPD----VAIVVIGEEPYAEWFGDIELLEFQHETKHAL-ALLKQLKADNIPVVTVFL 530
Query: 511 SGRPLVIEPYVEAMDALVAAWLPGSEGQGVADALFGDSP------FTGKLS 555
SGRPL + + A DA VAAWLPGSEG+GVAD L + FTGKLS
Sbjct: 531 SGRPLWVNKELNASDAFVAAWLPGSEGEGVADVLLTNKQGKTQFDFTGKLS 581
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 230/591 (38%), Positives = 326/591 (55%), Gaps = 62/591 (10%)
Query: 2 MYKDPKQPVEVRVKDLLSRMTLAEKIGQMTQIERVNATFDAMKNYFIXXXXXXXXXXXXX 61
+ +DP VE +++ LL++MT+ +K+ QM Q E T + M+ Y
Sbjct: 16 LKRDP--AVEAQIEKLLAKMTIEQKVAQMIQPEIGYLTVEQMRKYGFGSYLNGGNTAPYG 73
Query: 62 NATAQQ--WIDMVNDIQRGAMATRL---GIPMIYGVDAVHGHNNVYKATIFPHNVGLGAT 116
N A Q W+ +++ AM + L IP ++G DA+HGH+NVY AT+FPHN+GLGA
Sbjct: 74 NKRADQATWLKYADEMYLAAMDSTLDGIAIPTVWGTDAMHGHSNVYGATLFPHNIGLGAA 133
Query: 117 RDPNLVKRIGAATALEVRATGIPYAFAPCIAVCRDPRWGRCYESYSEDAKLVQQFS-VII 175
RD +L+KRIG ATA EV ATGI ++FAP +AV RD RWGR YESYSED LV++++ ++
Sbjct: 134 RDTDLIKRIGQATAKEVAATGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMV 193
Query: 176 SGLQGDAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTVNGINENNTIVTTEQLFDIHMP 235
+G+QGD G F+ G +++ A AKH+VGDGGT G++ NT++ + L DIH
Sbjct: 194 TGIQGDV-------GADFLKGSNRI-ATAKHFVGDGGTERGVDRGNTLIDEKGLRDIHSA 245
Query: 236 PYWSALDQRVSTVMISYSSINGKKMHANKELVTEYLKEKLKFKGFTISDW------EGID 289
Y+SA++Q V +VM S++S NGK++H +K L+T+ LK +L F GF +SDW EG D
Sbjct: 246 GYFSAINQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFVEGCD 305
Query: 290 RITSPPHSNYTYSVQESVLAGLDMIMVPYLYPEFINILTDLVNKKVIPMRRINDAVKRIL 349
+++ AG+D+IMVP + F + V VI RINDAV+R L
Sbjct: 306 ----------LEQCAQAINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFL 355
Query: 350 RVKFEMGLF--ENPYA--DNSFVNKLGCKEHRELAREAQQSXXXXXXX-------XXXXX 398
R K G+F P A ++ LG EHR LAREA +
Sbjct: 356 RAKIRWGVFTKSKPSARPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNESILPIKASSR 415
Query: 399 XXVAGTHADNLGYQCGGWTIEWQG--DSGNNYTEGTTILRAINATVDPS-TQVVFSERPD 455
VAG A+ + Q GGW++ WQG ++ +++ T+I + + V + ++ SE +
Sbjct: 416 ILVAGKGANAINMQAGGWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGE 475
Query: 456 YNFVKDNNFSIGIVVVGEVPYAETKGDNTNLTLPWPAPDIINNVCKATKC-----VVVLV 510
Y D + IVV+GE PYAE GD L + + K K V V +
Sbjct: 476 YTSKPD----VAIVVIGEEPYAEWFGDIELLEFQHETKHAL-ALLKQLKADNIPVVTVFL 530
Query: 511 SGRPLVIEPYVEAMDALVAAWLPGSEGQGVADALFGDSP------FTGKLS 555
SGRPL + + A DA VAAWLPGSEG+GVAD L + FTGKLS
Sbjct: 531 SGRPLWVNKELNASDAFVAAWLPGSEGEGVADVLLTNKQGKTQFDFTGKLS 581
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 142/318 (44%), Gaps = 51/318 (16%)
Query: 83 RLGIPMIYGVDAVHG---------HNNVYKATIFPHNVGLGATRDPNLVKRIGAATALEV 133
R+G+P D G N Y T FP + L +T + L++ +G A EV
Sbjct: 48 RVGLPAFVLADGPAGLRINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEV 107
Query: 134 RATGIPYAFAPCIAVCRDPRWGRCYESYSEDAKLVQQF-SVIISGLQGDAPSKQVKKGRP 192
R G+ AP + + R+P GR +E YSED L + S + G+Q
Sbjct: 108 REYGVDVLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG---------- 157
Query: 193 FVGGKDKVAACAKHYVGDGGTVNGINENNTIVTTEQLFDIHMPPYWSALDQ-RVSTVMIS 251
V AC KH+V + N + +TIV+ L +I++ + A+ + + +VM +
Sbjct: 158 -------VGACIKHFVANNQETNRMV-VDTIVSERALREIYLRGFEIAVKKSKPWSVMSA 209
Query: 252 YSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGL 311
Y+ +NGK N+ L+ + L+E+ F+GF +SDW D E + AG
Sbjct: 210 YNKLNGKYCSQNEWLLKKVLREEWGFEGFVMSDWYAGDNPV------------EQLKAGN 257
Query: 312 DMIMVPYLYP------EFINILTDLVNKKVIPMRRINDAVKRILRVKFEMGLFENPYADN 365
D+IM Y + I + + + + + +++ V+ IL+V F+N
Sbjct: 258 DLIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFKN----Y 313
Query: 366 SFVNKLGCKEHRELAREA 383
+ NK ++H ++A EA
Sbjct: 314 RYSNKPDLEKHAKVAYEA 331
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 450 FSERPDYNFVKDNNFSIGIV--VVGE-VPYAETKGDNTNLTLPWPAPDIINNVCK----- 501
SE+ + K N+ ++ ++ + GE KGD L D+I V +
Sbjct: 433 LSEKEIHKLAKKNDVAVIVISRISGEGYDRKPVKGD---FYLSDDETDLIKTVSREFHEQ 489
Query: 502 ATKCVVVLVSGRPLVIEPYVEAMDALVAAWLPGSE-GQGVADALFGDSPFTGKLSRT 557
K +V+L G P+ + + + +D ++ W G E G+ VAD L G +GKL T
Sbjct: 490 GKKVIVLLNIGSPVEVVSWRDLVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT 546
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 141/318 (44%), Gaps = 51/318 (16%)
Query: 83 RLGIPMIYGVDAVHG---------HNNVYKATIFPHNVGLGATRDPNLVKRIGAATALEV 133
R+G+P D G N Y T FP + L +T + L++ +G A EV
Sbjct: 48 RVGLPAFVLADGPAGLRINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEV 107
Query: 134 RATGIPYAFAPCIAVCRDPRWGRCYESYSEDAKLVQQF-SVIISGLQGDAPSKQVKKGRP 192
R G+ AP + + R+P GR +E YSED L + S + G+Q
Sbjct: 108 REYGVDVLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG---------- 157
Query: 193 FVGGKDKVAACAKHYVGDGGTVNGINENNTIVTTEQLFDIHMPPYWSALDQ-RVSTVMIS 251
V AC KH+V + N + +TIV+ L +I++ + A+ + + +VM +
Sbjct: 158 -------VGACIKHFVANNQETNRMV-VDTIVSERALREIYLRGFEIAVKKSKPWSVMSA 209
Query: 252 YSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGL 311
Y+ +NGK N+ L+ + L+E+ F+GF +S W D E + AG
Sbjct: 210 YNKLNGKYCSQNEWLLKKVLREEWGFEGFVMSAWYAGDNPV------------EQLKAGN 257
Query: 312 DMIMVPYLYP------EFINILTDLVNKKVIPMRRINDAVKRILRVKFEMGLFENPYADN 365
D+IM Y + I + + + + + +++ V+ IL+V F+N
Sbjct: 258 DLIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFKN----Y 313
Query: 366 SFVNKLGCKEHRELAREA 383
+ NK ++H ++A EA
Sbjct: 314 RYSNKPDLEKHAKVAYEA 331
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 450 FSERPDYNFVKDNNFSIGIV--VVGE-VPYAETKGDNTNLTLPWPAPDIINNVCK----- 501
SE+ + K N+ ++ ++ + GE KGD L D+I V +
Sbjct: 433 LSEKEIHKLAKKNDVAVIVISRISGEGYDRKPVKGD---FYLSDDETDLIKTVSREFHEQ 489
Query: 502 ATKCVVVLVSGRPLVIEPYVEAMDALVAAWLPGSE-GQGVADALFGDSPFTGKLSRT 557
K +V+L G P+ + + + +D ++ W G E G+ VAD L G +GKL T
Sbjct: 490 GKKVIVLLNIGSPVEVVSWRDLVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT 546
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 129/284 (45%), Gaps = 47/284 (16%)
Query: 83 RLGIPMIYGVDAVHGHNNV-----YKATIFPHNVGLGATRDPNLVKRIGAATALEVRATG 137
RLGIP + D +G + FP+ GL +T D +L++ G A E A
Sbjct: 35 RLGIPAVRVSDGPNGIRGTKFFDGVPSGCFPNGTGLASTFDRDLLETAGKLMAKESIAKN 94
Query: 138 IPYAFAPCIAVCRDPRWGRCYESYSEDAKLV-QQFSVIISGLQGDAPSKQVKKGRPFVGG 196
P + R P GR +ES+SED L S ++ G+QG+
Sbjct: 95 AAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEG-------------- 140
Query: 197 KDKVAACAKHYVGDGGTVNGINE----NNTIVTTEQLFDIHMPPYWSALDQRVST-VMIS 251
+AA KH+V N + + +N+IV+ L +I++ P+ A+ +M +
Sbjct: 141 ---IAATVKHFV-----CNDLEDQRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTA 192
Query: 252 YSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGL 311
Y+ +NG+ +K+L+ + L+++ K+ G +SDW G TY+ ++ GL
Sbjct: 193 YNKVNGEHCSQSKKLLIDILRDEWKWDGMLMSDWFG------------TYTTAAAIKNGL 240
Query: 312 DMIMV-PYLYPEFINILTDLVNKKVIPMRRINDAVKRILR-VKF 353
D+ P + + L +++ I ++D V+++L+ +KF
Sbjct: 241 DIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMIKF 284
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 468 IVVVGEVPYAETKG-DNTNLTLPWPAPDIINNVCKAT-KCVVVLVSGRPLVIEPYVEAMD 525
++++G ET+G D N+ LP +++ V KA V+V SG P+ P++E +
Sbjct: 578 VLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPVEF-PWLEDAN 636
Query: 526 ALVAAWLPGSE-GQGVADALFGDSPFTGKLS 555
ALV AW G+E G +AD L+GD GKLS
Sbjct: 637 ALVQAWYGGNELGNAIADVLYGDVVPNGKLS 667
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 123/519 (23%), Positives = 197/519 (37%), Gaps = 78/519 (15%)
Query: 81 ATRLGIPMIYGVDAVHGHNNVYKATIFPHNVGLGATRDPNLVKRIGAATALEVRATGIPY 140
A+++ P + D G +T F V +T D NL++ G EV+A+GI
Sbjct: 50 ASKISYPSLCLQDGPLGVRYSTGSTAFTPGVQAASTWDVNLIRERGQFIGEEVKASGIHV 109
Query: 141 AFAPCIA-VCRDPRWGRCYESYSEDAKLVQ-QFSVIISGLQGDAPSKQVKKGRPFVGGKD 198
P + + P+ GR +E + D L I+G+Q VG
Sbjct: 110 ILGPVAGPLGKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQS-------------VG--- 153
Query: 199 KVAACAKHYVGDGGTVNGINENNTIVTT----EQLFDIHMPPYWSALDQRVSTVMISYSS 254
V A AKHY+ +N N +++ L +++ P+ A+ V++VM SY+
Sbjct: 154 -VQATAKHYI-----LNEQELNRETISSNPDDRTLHELYTWPFADAVQANVASVMCSYNK 207
Query: 255 INGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLDMI 314
+N ++ + LK++L F G+ ++DW N ++ +S +GLDM
Sbjct: 208 VNTTWACEDQYTLQTVLKDQLGFPGYVMTDW------------NAQHTTVQSANSGLDMS 255
Query: 315 MVPYLYPEFINI----LTDLVNKKVIPMRRINDAVKRILRVKFEMGLFENPYADNSFVNK 370
M + + LT+ VN +P R++D V RIL + G + Y +
Sbjct: 256 MPGTDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRILAAWYLTGQDQAGYPSFNISRN 315
Query: 371 LGCKEH---RELAREA---------QQSXXXXXXXXXXXXXXVAGTHADNL------GYQ 412
+ R +AR+ + G HA N G
Sbjct: 316 VQGNHKTNVRAIARDGIVLLKNDANILPLKKPASIAVVGSAAIIGNHARNSPSCNDKGCD 375
Query: 413 CGGWTIEWQGDSGNNYTEGTTILRAINATVDP-STQVVFSERPDYNFVKDNNFSIGIVVV 471
G + W G NY AIN TQV S + + + +V
Sbjct: 376 DGALGMGW-GSGAVNYPYFVAPYDAINTRASSQGTQVTLSNTDNTSSGASAARGKDVAIV 434
Query: 472 --------GEVPYAETKGDNTNLTLPWPAPD-IINNVCKATKCVVVLVSGRPLVIEPYVE 522
G + GD NL PW + ++ V A V+V+V +I +
Sbjct: 435 FITADSGEGYITVEGNAGDRNNLD-PWHNGNALVQAVAGANSNVIVVVHSVGAIILEQIL 493
Query: 523 AM---DALVAAWLPGSE-GQGVADALFGDSPFTGKLSRT 557
A+ A+V A LP E G + D L+GD +GKL T
Sbjct: 494 ALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYT 532
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 123/519 (23%), Positives = 197/519 (37%), Gaps = 78/519 (15%)
Query: 81 ATRLGIPMIYGVDAVHGHNNVYKATIFPHNVGLGATRDPNLVKRIGAATALEVRATGIPY 140
A+++ P + D G +T F V +T D NL++ G EV+A+GI
Sbjct: 49 ASKISYPSLCLQDGPLGVRYSTGSTAFTPGVQAASTWDVNLIRERGQFIGEEVKASGIHV 108
Query: 141 AFAPCIA-VCRDPRWGRCYESYSEDAKLVQ-QFSVIISGLQGDAPSKQVKKGRPFVGGKD 198
P + + P+ GR +E + D L I+G+Q VG
Sbjct: 109 ILGPVAGPLGKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQS-------------VG--- 152
Query: 199 KVAACAKHYVGDGGTVNGINENNTIVTT----EQLFDIHMPPYWSALDQRVSTVMISYSS 254
V A AKHY+ +N N +++ L +++ P+ A+ V++VM SY+
Sbjct: 153 -VQATAKHYI-----LNEQELNRETISSNPDDRTLHELYTWPFADAVQANVASVMCSYNK 206
Query: 255 INGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLDMI 314
+N ++ + LK++L F G+ ++DW N ++ +S +GLDM
Sbjct: 207 VNTTWACEDQYTLQTVLKDQLGFPGYVMTDW------------NAQHTTVQSANSGLDMS 254
Query: 315 MVPYLYPEFINI----LTDLVNKKVIPMRRINDAVKRILRVKFEMGLFENPYADNSFVNK 370
M + + LT+ VN +P R++D V RIL + G + Y +
Sbjct: 255 MPGTDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRILAAWYLTGQDQAGYPSFNISRN 314
Query: 371 LGCKEH---RELAREA---------QQSXXXXXXXXXXXXXXVAGTHADNL------GYQ 412
+ R +AR+ + G HA N G
Sbjct: 315 VQGNHKTNVRAIARDGIVLLKNDANILPLKKPASIAVVGSAAIIGNHARNSPSCNDKGCD 374
Query: 413 CGGWTIEWQGDSGNNYTEGTTILRAINATVDP-STQVVFSERPDYNFVKDNNFSIGIVVV 471
G + W G NY AIN TQV S + + + +V
Sbjct: 375 DGALGMGW-GSGAVNYPYFVAPYDAINTRASSQGTQVTLSNTDNTSSGASAARGKDVAIV 433
Query: 472 --------GEVPYAETKGDNTNLTLPWPAPD-IINNVCKATKCVVVLVSGRPLVIEPYVE 522
G + GD NL PW + ++ V A V+V+V +I +
Sbjct: 434 FITADSGEGYITVEGNAGDRNNLD-PWHNGNALVQAVAGANSNVIVVVHSVGAIILEQIL 492
Query: 523 AM---DALVAAWLPGSE-GQGVADALFGDSPFTGKLSRT 557
A+ A+V A LP E G + D L+GD +GKL T
Sbjct: 493 ALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYT 531
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 130/297 (43%), Gaps = 53/297 (17%)
Query: 83 RLGIPMIYGVDAVHGHNNV-----YKATIFPHNVGLGATRDPNLVKRIGAATALEVRATG 137
RLGIP + D +G + FP+ GL +T D +L++ G A E A
Sbjct: 35 RLGIPAVRVSDGPNGIRGTKFFDGVPSGCFPNGTGLASTFDRDLLETAGKLXAKESIAKN 94
Query: 138 IPYAFAPCIAVCRDPRWGRCYESYSEDAKLV-QQFSVIISGLQGDAPSKQVKKGRPFVGG 196
P R P GR +ES+SED L S ++ G QG+
Sbjct: 95 AAVILGPTTNXQRGPLGGRGFESFSEDPYLAGXATSSVVKGXQGEG-------------- 140
Query: 197 KDKVAACAKHYVGDGGTVNGINE----NNTIVTTEQLFDIHMPPYWSALDQ-RVSTVMIS 251
+AA KH+V N + + +N+IV+ L +I++ P+ A+ + +
Sbjct: 141 ---IAATVKHFV-----CNDLEDQRFSSNSIVSERALREIYLEPFRLAVKHANPVCIXTA 192
Query: 252 YSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGL 311
Y+ +NG+ +K+L+ + L+++ K+ G SDW G TY+ ++ GL
Sbjct: 193 YNKVNGEHCSQSKKLLIDILRDEWKWDGXLXSDWFG------------TYTTAAAIKNGL 240
Query: 312 DMIMV-PYLYPEFINILTDLVNKKVIPMRRINDAVKRILR-VKF------EMGLFEN 360
D+ P + + L +++ I ++D V+++L+ +KF + G+ EN
Sbjct: 241 DIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKXIKFVVDNLEKTGIVEN 297
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 468 IVVVGEVPYAETKG-DNTNLTLPWPAPDIINNVCKAT-KCVVVLVSGRPLVIEPYVEAMD 525
++++G ET+G D N LP +++ V KA V+V SG P+ P++E +
Sbjct: 578 VLIIGLNGEWETEGYDRENXDLPKRTNELVRAVLKANPNTVIVNQSGTPVEF-PWLEDAN 636
Query: 526 ALVAAWLPGSE-GQGVADALFGDSPFTGKLS 555
ALV AW G+E G +AD L+GD GKLS
Sbjct: 637 ALVQAWYGGNELGNAIADVLYGDVVPNGKLS 667
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 93/215 (43%), Gaps = 23/215 (10%)
Query: 83 RLGIPMIYGVDAVHGHNNVYK-ATIFPHNVGLGATRDPNLVKRIGAATALEVRATGIPYA 141
RLGIP + D +G V + AT P V L +T D + G + RA
Sbjct: 89 RLGIPELRAADGPNGIRLVGQTATALPAPVALASTFDDTMADSYGKVMGRDGRALNQDMV 148
Query: 142 FAPCIAVCRDPRWGRCYESYSEDAKLVQQFSVI-ISGLQGDAPSKQVKKGRPFVGGKDKV 200
P + R P GR YE++SED + + +V I G+QG +
Sbjct: 149 LGPMMNNIRVPHGGRNYETFSEDPLVSSRTAVAQIKGIQGAG-----------------L 191
Query: 201 AACAKHYVGDGGTVNGINENNTIVTTEQLFDIHMPPYWSALDQRVSTVMISYSSINGKKM 260
AKH+ + N + N V + L +I P + ++ ++ M +Y+ +NGK
Sbjct: 192 MTTAKHFAANNQENNRFSVNAN-VDEQTLREIEFPAFEASSKAGAASFMCAYNGLNGKPS 250
Query: 261 HANKELVTEYLKEKLKFKGFTISDW---EGIDRIT 292
N EL+ L+ + F+G+ +SDW G D IT
Sbjct: 251 CGNDELLNNVLRTQWGFQGWVMSDWLATPGTDAIT 285
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/360 (21%), Positives = 159/360 (44%), Gaps = 63/360 (17%)
Query: 64 TAQQWIDMVNDIQRGAMATRLGIPMIYGVDAVHGH-NNVYKATIFPHNVGLGATRDPNLV 122
T +Q + + +D Q+ + IP++ +D G + + T FP N+ LGA R
Sbjct: 98 TTKQTVQLTDDYQKASPK----IPLMLSIDQEGGIVTRLGEGTNFPGNMALGAARSRINA 153
Query: 123 KRIGAATALEVRATGIPYAFAPCIAVCRDPRWGRC-YESYSEDAKLVQQFSV-IISGLQG 180
+ G+ E+ A GI F+P + + +P S+S + +L + + + GLQ
Sbjct: 154 YQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQ- 212
Query: 181 DAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTVNGINENNTIVT--TEQLFDIHMPPYW 238
+ +A+ KH+ G G T + +V+ E+L ++ + P+
Sbjct: 213 ----------------RQDIASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQ 256
Query: 239 SALDQRVSTVMISY------------SSINGKKMHA----NKELVTEYLKEKLKFKGFTI 282
A+D VM ++ S ++G + +K+++T L++++ F G +
Sbjct: 257 KAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIV 316
Query: 283 SDWEGIDRITSPPHSNYTYSVQESVLAGLDMIMVP---------YLYPEFINILTDLVNK 333
+D + I H +V +V AG+D+ ++P + I L + V
Sbjct: 317 TDALNMKAIAD--HFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKN 374
Query: 334 KVIPMRRINDAVKRILRVKFEMGLFENPYADNS------FVNKLGCKEH----RELAREA 383
IP ++IN++V+RI+ +K + G++ +D++ +G K+H ++LA +A
Sbjct: 375 GDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKA 434
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/360 (21%), Positives = 159/360 (44%), Gaps = 63/360 (17%)
Query: 64 TAQQWIDMVNDIQRGAMATRLGIPMIYGVDAVHGH-NNVYKATIFPHNVGLGATRDPNLV 122
T +Q + + +D Q+ + IP++ +D G + + T FP N+ LGA R
Sbjct: 102 TTKQTVQLTDDYQKASPK----IPLMLSIDQEGGIVTRLGEGTNFPGNMALGAARSRINA 157
Query: 123 KRIGAATALEVRATGIPYAFAPCIAVCRDPRWGRC-YESYSEDAKLVQQFSV-IISGLQG 180
+ G+ E+ A GI F+P + + +P S+S + +L + + + GLQ
Sbjct: 158 YQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQ- 216
Query: 181 DAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTVNGINENNTIVT--TEQLFDIHMPPYW 238
+ +A+ KH+ G G T + +V+ E+L ++ + P+
Sbjct: 217 ----------------RQDIASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQ 260
Query: 239 SALDQRVSTVMISY------------SSINGKKMHA----NKELVTEYLKEKLKFKGFTI 282
A+D VM ++ S ++G + +K+++T L++++ F G +
Sbjct: 261 KAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIV 320
Query: 283 SDWEGIDRITSPPHSNYTYSVQESVLAGLDMIMVP---------YLYPEFINILTDLVNK 333
++ + I H +V +V AG+D+ ++P + I L + V
Sbjct: 321 TNALNMKAIAD--HFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKN 378
Query: 334 KVIPMRRINDAVKRILRVKFEMGLFENPYADNS------FVNKLGCKEH----RELAREA 383
IP ++IN++V+RI+ +K + G++ +D++ +G K+H ++LA +A
Sbjct: 379 GDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKA 438
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/360 (21%), Positives = 159/360 (44%), Gaps = 63/360 (17%)
Query: 64 TAQQWIDMVNDIQRGAMATRLGIPMIYGVDAVHGH-NNVYKATIFPHNVGLGATRDPNLV 122
T +Q + + +D Q+ + IP++ +D G + + T FP N+ LGA R
Sbjct: 72 TTKQTVQLTDDYQKASPK----IPLMLSIDQEGGIVTRLGEGTNFPGNMALGAARSRINA 127
Query: 123 KRIGAATALEVRATGIPYAFAPCIAVCRDPRWGRC-YESYSEDAKLVQQFSV-IISGLQG 180
+ G+ E+ A GI F+P + + +P S+S + +L + + + GLQ
Sbjct: 128 YQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQ- 186
Query: 181 DAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTVNGINENNTIVT--TEQLFDIHMPPYW 238
+ +A+ KH+ G G T + +V+ E+L ++ + P+
Sbjct: 187 ----------------RQDIASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQ 230
Query: 239 SALDQRVSTVMISY------------SSINGKKMHA----NKELVTEYLKEKLKFKGFTI 282
A+D VM ++ S ++G + +K+++T L++++ F G +
Sbjct: 231 KAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIV 290
Query: 283 SDWEGIDRITSPPHSNYTYSVQESVLAGLDMIMVP---------YLYPEFINILTDLVNK 333
++ + I H +V +V AG+D+ ++P + I L + V
Sbjct: 291 TNALNMKAIAD--HFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKN 348
Query: 334 KVIPMRRINDAVKRILRVKFEMGLFENPYADNS------FVNKLGCKEH----RELAREA 383
IP ++IN++V+RI+ +K + G++ +D++ +G K+H ++LA +A
Sbjct: 349 GDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKA 408
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
pdb|3TEV|B Chain B, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
Length = 351
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 30/216 (13%)
Query: 108 PHNVGLGATRDPNLVKRIGAATALEVRATGIPYAFAPCIAVCRDPRWGRCYESYSEDAKL 167
P LGA D L + + AA A ++R+ GI + F P + + +P
Sbjct: 96 PSAXSLGAADDQQLTEDVNAALARQLRSVGINWNFTPVLDINVNP--------------- 140
Query: 168 VQQFSVIISGLQGDAPSKQVKKGRPFVGG--KDKVAACAKHYVGDGGTVNGINENNTIVT 225
VI G ++ + GR + G ++ VA CAKH+ G G T + V+
Sbjct: 141 --ANPVIGDRAYGSDAARVTRHGRAALAGHTREGVAPCAKHFPGHGDTHQDSHLALPRVS 198
Query: 226 TE--QLFDIHMPPYWSALDQR--VSTVMISYSSINGKK-MHANKELVTEYLKEKLKFKGF 280
+L + P+ + L + + T I Y +++ + + ++T L+E+ + G
Sbjct: 199 KSRAELDAGELAPFRALLPETPAIXTAHIVYDALDAEHPATLSPRILTGLLREEWGYDGV 258
Query: 281 TISDWEGIDRITSPPHSNYTY--SVQESVLAGLDMI 314
++D G I +NY + ++ AG D++
Sbjct: 259 IVTDSXGXQAID----ANYGRGEAAVRALRAGADLV 290
>pdb|2OXN|A Chain A, Vibrio Cholerae Family 3 Glycoside Hydrolase (Nagz) In
Complex With Pugnac
Length = 340
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 99/261 (37%), Gaps = 47/261 (18%)
Query: 87 PMIYGVDAVHGHNNVYK---ATIFPHNVGLGATRDPNLVKRIGAATALEVRATGIPYAFA 143
P++ GVD G ++ + I P A L ++ G A E+ A + +FA
Sbjct: 56 PILIGVDQEGGRVQRFREGFSRIPPAQYYARAENGVELAEQGGWLMAAELIAHDVDLSFA 115
Query: 144 PCIAV---CRDPRWGRCYESYSEDAKLVQQFSVIISGLQGDAPSKQVKKGRPFVGGKDKV 200
P + + C+ ++ ED + V +K F+ G V
Sbjct: 116 PVLDMGFACK----AIGNRAFGEDVQTV------------------LKHSSAFLRGMKAV 153
Query: 201 --AACAKHYVGDGGTV------NGINENNTIVTTEQLFDIHMPPYWSALDQRVSTVMISY 252
A KH+ G G + +E TI +F + LD + ++ Y
Sbjct: 154 GMATTGKHFPGHGAVIADSHLETPYDERETIAQDMAIFRAQIEA--GVLDAMMPAHVV-Y 210
Query: 253 SSINGKKMHANKELVTEYLKEKLKFKGFTISD---WEGIDRITSPPHSNYTYSVQESVLA 309
+ + + + + L+E+L FKG SD EG + P ++ ++++A
Sbjct: 211 PHYDAQPASGSSYWLKQVLREELGFKGIVFSDDLSMEGAAVMGGPVERSH-----QALVA 265
Query: 310 GLDMIMVPYLYPEFINILTDL 330
G DMI++ + +L +L
Sbjct: 266 GCDMILICNKREAAVEVLDNL 286
>pdb|3GS6|A Chain A, Vibrio Cholerea Family 3 Glycoside Hydrolase (Nagz)in
Complex With N- Butyryl-Pugnac
pdb|3GSM|A Chain A, Vibrio Cholerae Family 3 Glycoside Hydrolase (Nagz) Bound
To N- Valeryl-Pugnac
Length = 340
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 99/261 (37%), Gaps = 47/261 (18%)
Query: 87 PMIYGVDAVHGHNNVYK---ATIFPHNVGLGATRDPNLVKRIGAATALEVRATGIPYAFA 143
P++ GVD G ++ + I P A L ++ G A E+ A + +FA
Sbjct: 56 PILIGVDQEGGRVQRFREGFSRIPPAQYYARAENGVELAEQGGWLMAAELIAHDVDLSFA 115
Query: 144 PCIAV---CRDPRWGRCYESYSEDAKLVQQFSVIISGLQGDAPSKQVKKGRPFVGGKDKV 200
P + + C+ ++ ED + V +K F+ G V
Sbjct: 116 PVLDMGFACK----AIGNRAFGEDVQTV------------------LKHSSAFLRGMKAV 153
Query: 201 --AACAKHYVGDGGTVNG------INENNTIVTTEQLFDIHMPPYWSALDQRVSTVMISY 252
A KH+ G G + +E TI +F + LD + ++ Y
Sbjct: 154 GMATTGKHFPGHGAVIADSHLETPYDERETIAQDMAIFRAQIEA--GVLDAMMPAHVV-Y 210
Query: 253 SSINGKKMHANKELVTEYLKEKLKFKGFTISD---WEGIDRITSPPHSNYTYSVQESVLA 309
+ + + + + L+E+L FKG SD EG + P ++ ++++A
Sbjct: 211 PHYDAQPASGSSYWLKQVLREELGFKGIVFSDDLSMEGAAVMGGPVERSH-----QALVA 265
Query: 310 GLDMIMVPYLYPEFINILTDL 330
G DMI++ + +L +L
Sbjct: 266 GCDMILICNKREAAVEVLDNL 286
>pdb|1Y65|A Chain A, Crystal Structure Of Beta-Hexosaminidase From Vibrio
Cholerae In Complex With N-Acetyl-D-Glucosamine To A
Resolution Of 1.85
Length = 342
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 99/261 (37%), Gaps = 47/261 (18%)
Query: 87 PMIYGVDAVHGHNNVYK---ATIFPHNVGLGATRDPNLVKRIGAATALEVRATGIPYAFA 143
P++ GVD G ++ + I P A L ++ G A E+ A + +FA
Sbjct: 58 PILIGVDQEGGRVQRFREGFSRIPPAQYYARAENGVELAEQGGWLMAAELIAHDVDLSFA 117
Query: 144 PCIAV---CRDPRWGRCYESYSEDAKLVQQFSVIISGLQGDAPSKQVKKGRPFVGGKDKV 200
P + + C+ ++ ED + V +K F+ G V
Sbjct: 118 PVLDMGFACK----AIGNRAFGEDVQTV------------------LKHSSAFLRGMKAV 155
Query: 201 --AACAKHYVGDGGTV------NGINENNTIVTTEQLFDIHMPPYWSALDQRVSTVMISY 252
A KH+ G G + +E TI +F + LD + ++ Y
Sbjct: 156 GMATTGKHFPGHGAVIADSHLETPYDERETIAQDMAIFRAQIEA--GVLDAMMPAHVV-Y 212
Query: 253 SSINGKKMHANKELVTEYLKEKLKFKGFTISD---WEGIDRITSPPHSNYTYSVQESVLA 309
+ + + + + L+E+L FKG SD EG + P ++ ++++A
Sbjct: 213 PHYDAQPASGSSYWLKQVLREELGFKGIVFSDDLSMEGAAVMGGPVERSH-----QALVA 267
Query: 310 GLDMIMVPYLYPEFINILTDL 330
G DMI++ + +L +L
Sbjct: 268 GCDMILICNKREAAVEVLDNL 288
>pdb|4GNV|A Chain A, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315 With Bound
N-Acetyl-D-Glucosamine
pdb|4GNV|B Chain B, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315 With Bound
N-Acetyl-D-Glucosamine
Length = 350
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 46/231 (19%)
Query: 105 TIFPHNVGLGATRDPNLVKRIGAATAL------EVRATGIPYAFAPCIAVCRDPRWGRCY 158
T+ P LG D +++ ATA+ E+RA GI +F P + D +G
Sbjct: 88 TVLPAMRRLGELWDRDVLLATKVATAVGYILAAELRACGIDMSFTPVL----DLDYGHSK 143
Query: 159 ----ESYSEDAKLVQQFSVIISGLQGDAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTV 214
++ D ++V +K + G G +A C KH+ G
Sbjct: 144 VIGDRAFHRDPRVVTLL------------AKSLNHGLSLAG----MANCGKHFPG----- 182
Query: 215 NGINENNTIV-------TTEQLFDIHMPPY-WSALD-QRVSTVMISYSSINGKKMHANKE 265
+G E ++ V T + + + + PY W L V + Y+ ++ + ++
Sbjct: 183 HGFAEADSHVALPTDDRTLDAILEQDVAPYDWLGLSLAAVIPAHVIYTQVDKRPAGFSRV 242
Query: 266 LVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLDMIMV 316
+ + L+ KL F G SD ++ + T + ++ AG DM++V
Sbjct: 243 WLQDILRGKLGFTGAIFSDDLSME--AAREGGTLTQAADAALAAGCDMVLV 291
>pdb|4G6C|A Chain A, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315
pdb|4G6C|B Chain B, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315
Length = 348
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 46/231 (19%)
Query: 105 TIFPHNVGLGATRDPNLVKRIGAATAL------EVRATGIPYAFAPCIAVCRDPRWGRCY 158
T+ P LG D +++ ATA+ E+RA GI +F P + D +G
Sbjct: 86 TVLPAMRRLGELWDRDVLLATKVATAVGYILAAELRACGIDMSFTPVL----DLDYGHSK 141
Query: 159 ----ESYSEDAKLVQQFSVIISGLQGDAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTV 214
++ D ++V +K + G G +A C KH+ G
Sbjct: 142 VIGDRAFHRDPRVVTLL------------AKSLNHGLSLAG----MANCGKHFPG----- 180
Query: 215 NGINENNTIV-------TTEQLFDIHMPPY-WSALD-QRVSTVMISYSSINGKKMHANKE 265
+G E ++ V T + + + + PY W L V + Y+ ++ + ++
Sbjct: 181 HGFAEADSHVALPTDDRTLDAILEQDVAPYDWLGLSLAAVIPAHVIYTQVDKRPAGFSRV 240
Query: 266 LVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLDMIMV 316
+ + L+ KL F G SD ++ + T + ++ AG DM++V
Sbjct: 241 WLQDILRGKLGFTGAIFSDDLSME--AAREGGTLTQAADAALAAGCDMVLV 289
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 170 QFSVIISGLQGDAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTVNGINENNTIVTTEQL 229
+ + I ++G KQ +K P + A+ +G G V G+ T
Sbjct: 121 HWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDE 180
Query: 230 FDIHMP-----PYWSALDQRVSTVMISYSSI--NGKKMHANKELVT-EYLKEKLKFKGFT 281
F IH P +W +VST + Y+ + +GK N +V L++ G T
Sbjct: 181 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVT 240
Query: 282 ISD 284
+ D
Sbjct: 241 VGD 243
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 155 GRCYESYSEDAKLVQQFSVIISGLQGDAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTV 214
GR + A + + + + ++G +Q KK + A+ +G G V
Sbjct: 87 GRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNV 146
Query: 215 NGINENNTIVTTEQLFDIHMP-----PYWSALDQRVSTVMISYSSI--NGK 258
G+ T+ F IH P +W +VST + Y+ + NGK
Sbjct: 147 QGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGK 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,134,101
Number of Sequences: 62578
Number of extensions: 655346
Number of successful extensions: 1649
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1588
Number of HSP's gapped (non-prelim): 35
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)