Query 036635
Match_columns 557
No_of_seqs 239 out of 1666
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:01:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15098 beta-D-glucoside gluc 100.0 2E-104 4E-109 892.7 50.9 514 6-557 30-598 (765)
2 PLN03080 Probable beta-xylosid 100.0 1.1E-98 2E-103 842.3 47.0 492 1-557 40-587 (779)
3 COG1472 BglX Beta-glucosidase- 100.0 5.8E-74 1.3E-78 596.8 31.0 358 21-421 1-375 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 2.6E-73 5.7E-78 578.3 24.1 295 22-351 1-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 2.4E-62 5.2E-67 500.5 27.5 278 39-354 17-308 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 99.9 2.9E-25 6.3E-30 217.5 10.3 163 387-557 8-187 (227)
7 CHL00162 thiG thiamin biosynth 72.2 16 0.00035 35.9 7.7 91 233-336 147-243 (267)
8 PF05690 ThiG: Thiazole biosyn 70.8 12 0.00026 36.4 6.4 91 233-336 133-229 (247)
9 COG0486 ThdF Predicted GTPase 61.8 2.1E+02 0.0045 30.9 14.0 103 240-362 60-179 (454)
10 PRK11840 bifunctional sulfur c 56.1 39 0.00085 34.6 7.2 87 236-336 210-303 (326)
11 cd00938 HisRS_RNA HisRS_RNA bi 53.6 32 0.00068 24.4 4.2 31 326-356 12-42 (45)
12 COG2022 ThiG Uncharacterized e 52.4 54 0.0012 31.9 7.1 88 236-336 143-236 (262)
13 cd04728 ThiG Thiazole synthase 52.4 60 0.0013 31.9 7.6 85 237-336 137-229 (248)
14 PF13653 GDPD_2: Glycerophosph 49.8 13 0.00029 23.9 1.8 17 236-252 12-28 (30)
15 PF09373 PMBR: Pseudomurein-bi 48.9 32 0.00069 22.5 3.5 26 333-358 2-27 (33)
16 PRK00208 thiG thiazole synthas 47.1 85 0.0018 31.0 7.7 84 237-335 137-228 (250)
17 PF09851 SHOCT: Short C-termin 46.3 56 0.0012 21.0 4.4 27 323-349 4-30 (31)
18 PRK13533 7-cyano-7-deazaguanin 45.4 46 0.001 36.4 6.2 71 242-316 49-121 (487)
19 PF08044 DUF1707: Domain of un 38.9 56 0.0012 24.0 3.9 34 321-354 9-42 (53)
20 PRK05848 nicotinate-nucleotide 37.6 1.1E+02 0.0025 30.7 7.2 36 270-317 174-209 (273)
21 PRK10415 tRNA-dihydrouridine s 35.4 5.1E+02 0.011 26.6 14.5 59 115-178 72-132 (321)
22 PRK01008 queuine tRNA-ribosylt 32.5 59 0.0013 34.2 4.4 18 271-288 76-93 (372)
23 PRK12277 50S ribosomal protein 28.3 25 0.00054 28.2 0.6 43 131-179 37-79 (83)
24 TIGR01305 GMP_reduct_1 guanosi 27.8 1.3E+02 0.0027 31.3 5.7 69 238-317 165-241 (343)
25 COG0157 NadC Nicotinate-nucleo 27.4 1.1E+02 0.0024 30.7 5.0 18 301-318 199-216 (280)
26 COG2003 RadC DNA repair protei 27.2 55 0.0012 31.7 2.8 53 236-288 157-210 (224)
27 PRK13534 7-cyano-7-deazaguanin 26.3 1.3E+02 0.0029 34.1 6.2 73 242-316 46-120 (639)
28 TIGR00737 nifR3_yhdG putative 26.1 7.1E+02 0.015 25.3 15.5 51 301-351 205-263 (319)
29 COG2306 Predicted RNA-binding 25.5 66 0.0014 29.6 2.9 37 310-346 109-147 (183)
30 PRK05593 rplR 50S ribosomal pr 24.4 1.6E+02 0.0035 25.5 5.0 25 116-140 65-89 (117)
31 KOG1316 Argininosuccinate lyas 24.0 63 0.0014 33.2 2.7 22 269-293 214-235 (464)
32 PF13524 Glyco_trans_1_2: Glyc 24.0 1.2E+02 0.0026 24.2 4.1 60 273-348 17-76 (92)
33 COG5016 Pyruvate/oxaloacetate 23.2 7.8E+02 0.017 26.3 10.4 116 232-361 157-286 (472)
34 PF05636 HIGH_NTase1: HIGH Nuc 23.1 86 0.0019 33.3 3.7 21 246-266 34-54 (388)
35 PF02260 FATC: FATC domain; I 21.6 32 0.00069 22.6 0.1 26 7-32 2-27 (33)
36 PLN03007 UDP-glucosyltransfera 21.3 2.3E+02 0.0051 30.9 6.8 73 278-350 345-439 (482)
37 COG2511 GatE Archaeal Glu-tRNA 21.3 1.2E+02 0.0027 33.1 4.3 22 117-138 195-216 (631)
38 cd02940 DHPD_FMN Dihydropyrimi 21.1 8.6E+02 0.019 24.5 11.5 19 300-318 264-282 (299)
39 PRK06096 molybdenum transport 20.9 1.9E+02 0.0041 29.2 5.5 16 301-316 200-215 (284)
40 CHL00139 rpl18 ribosomal prote 20.8 1.4E+02 0.0029 25.6 3.8 28 113-140 54-81 (109)
41 PF15448 NTS_2: N-terminal seg 20.3 1.2E+02 0.0026 21.3 2.6 30 4-33 1-30 (51)
42 PRK06978 nicotinate-nucleotide 20.1 1.8E+02 0.004 29.5 5.1 18 301-318 216-233 (294)
43 COG1879 RbsB ABC-type sugar tr 20.1 6.7E+02 0.015 25.1 9.6 168 108-335 92-266 (322)
No 1
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=1.6e-104 Score=892.70 Aligned_cols=514 Identities=30% Similarity=0.532 Sum_probs=436.4
Q ss_pred CCCCHHHHHHHHHhcCCHHHHHhcccccccccc-----cHHHHHhcccceEEeCCCCCCCCCcCHHHHHHHHHHHHHHhh
Q 036635 6 PKQPVEVRVKDLLSRMTLAEKIGQMTQIERVNA-----TFDAMKNYFIGSVLSGGGSVPSPNATAQQWIDMVNDIQRGAM 80 (557)
Q Consensus 6 ~~~~~~~~v~~ll~~mtl~ekvgql~~~~~~~~-----~~~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~~a~ 80 (557)
++.+.++|+++++++||+|||||||+++..... ..++|+++++|||+. ..+++++ +.+|+.+.
T Consensus 30 ~~~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n--------~~~~~~~----~~lq~~~~ 97 (765)
T PRK15098 30 TPEARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFN--------TVTRQDI----RAMQDQVM 97 (765)
T ss_pred CCcCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEc--------CcCHHHH----HHHHHHHh
Confidence 356889999999999999999999998764432 246789999999973 2345544 45666654
Q ss_pred -hcCCCCCcEEEeeCCCCcccCCCcccCCccccccccCCHHHHHHHHHHHHHHHHHcCCCeeeecccCcCCCCCCCcccc
Q 036635 81 -ATRLGIPMIYGVDAVHGHNNVYKATIFPHNVGLGATRDPNLVKRIGAATALEVRATGIPYAFAPCIAVCRDPRWGRCYE 159 (557)
Q Consensus 81 -~~~~~iP~~~~~D~e~G~~~~~~~t~fP~~~~laat~d~~l~~~~g~~~a~e~~a~Gin~~~aPv~Dv~~~p~~gr~~r 159 (557)
.+|++||+|+++|+|||. .|.||+++++|||||+++++++|+++|+|+|++||||+||||+||+|||+|||++|
T Consensus 98 ~~~~~giP~li~~D~e~G~-----~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~Gin~~laPv~Dv~r~p~~gr~~r 172 (765)
T PRK15098 98 QLSRLKIPLFFAYDVVHGQ-----RTVFPISLGLASSWDLDAVATVGRVSAYEAADDGLNMTWAPMVDISRDPRWGRASE 172 (765)
T ss_pred hCCCCCCCeeEEEeCCCCc-----cccCChHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCEEeeCcccccCCCCcccccc
Confidence 478999999999999996 48899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHH-HHhhccCCCCCccccCCCCccCCCCceeEeeccccCCCCCCCCCcCCCccCCHHHHHhhcCHHHH
Q 036635 160 SYSEDAKLVQQFSV-IISGLQGDAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTVNGINENNTIVTTEQLFDIHMPPYW 238 (557)
Q Consensus 160 sfgeDp~~v~~~a~-~v~G~q~~~~~~~~~~g~~~~~g~~gV~a~~KHFpg~g~~~~~~~~~~~~~~~~~l~~~~l~pF~ 238 (557)
||||||+++++|+. ||+|+|+.+.. +..||++|+|||||||.++.++|.....+++++|++.||+||+
T Consensus 173 sfgeDP~lv~~~~~a~v~GlQ~~~~~-----------~~~gV~a~~KHFpG~g~~~~~~~~~~~~~~~~~l~e~~l~PF~ 241 (765)
T PRK15098 173 GFGEDTYLTSIMGKTMVKAMQGKSPA-----------DRYSVMTSVKHFALYGAVEGGRDYNTVDMSPQRMFNDYLPPYK 241 (765)
T ss_pred CcCCCHHHHHHHHHHHHHHHcCCCCC-----------CCCCEEEECcEEeCCCCcccCccCccCcCCHHHHHHHHHHHHH
Confidence 99999999999996 99999963110 1258999999999999988888877777899999999999999
Q ss_pred HHHhcccCeeeecccCcCCccccCCHHHHHHHHHhhcCCCeEEEcchhhhhhhcCCC-CCChHHHHHHHHHcCCCeecCC
Q 036635 239 SALDQRVSTVMISYSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPP-HSNYTYSVQESVLAGLDMIMVP 317 (557)
Q Consensus 239 ~~i~~g~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~visD~~~m~~~~~~~-~~~~~~~~~~al~AG~D~~l~~ 317 (557)
.+|++|+.+|||||+.+||+|+|+|+++|+++||+||||+|+|||||++|.++..++ ..+..+++++||+||+||+|.+
T Consensus 242 ~ai~ag~~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~~~~~~~~~ea~~~Al~AG~Dl~m~~ 321 (765)
T PRK15098 242 AGLDAGSGGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIKHGVAADPEDAVRLALKSGIDMSMSD 321 (765)
T ss_pred HHHHhCCCEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHhcccCCCHHHHHHHHHHcCCCcccCc
Confidence 999999999999999999999999999999999999999999999999999886421 2356788999999999999954
Q ss_pred CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCccc------hhccCCHHHHHHHHHHhc------
Q 036635 318 YLYPEFINILTDLVNKKVIPMRRINDAVKRILRVKFEMGLFENPYADNSF------VNKLGCKEHRELAREAQQ------ 385 (557)
Q Consensus 318 ~~~~~~~~~l~~av~~g~i~~~~id~av~Ril~~k~~~gl~~~~~~~~~~------~~~~~~~~h~~lA~~~a~------ 385 (557)
. .+.+.|.++|++|++++++||+||+|||++|+++|+|++|+.+... ...+.+++|+++|+++++
T Consensus 322 ~---~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~sivLL 398 (765)
T PRK15098 322 E---YYSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLL 398 (765)
T ss_pred h---hHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCCCCccccccccccccccccCCHHHHHHHHHHHHhcEEEE
Confidence 3 2345789999999999999999999999999999999998754211 123467899999999988
Q ss_pred -C-CCccCCCCCCCeEEEEcccCCcccccCCCceeecCCCCCCCccccccHHHHHHhhcCCCceEEecCCCC--------
Q 036635 386 -S-PPVLPLEKKLPKILVAGTHADNLGYQCGGWTIEWQGDSGNNYTEGTTILRAINATVDPSTQVVFSERPD-------- 455 (557)
Q Consensus 386 -~-~~~LPL~~~~~kIaviG~~a~~~~~~~gg~~~~~~g~~~~~~~~~~t~l~~l~~~~~~~~~~~~~~~~~-------- 455 (557)
| +++|||+++ +||+||||+++....++|+|+.. + ...+.+|++++|++.+.....+.|..+.+
T Consensus 399 KN~~~~LPL~~~-~~IaviG~~a~~~~~~~G~~s~~-----~-~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~ 471 (765)
T PRK15098 399 KNRLETLPLKKS-GTIAVVGPLADSQRDVMGSWSAA-----G-VADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGII 471 (765)
T ss_pred ecCCCCCCCCCC-CEEEEECCCcccccccCCCcccc-----C-ccCCCCCHHHHHHHhhcCCceEEEecccccccCcccc
Confidence 4 579999865 79999999998877677776532 1 12467899999999865544566543321
Q ss_pred ----------------------hhhhhccCCCeEEEEEecCCCCcCCC-CCCCccCCCChHHHHHHHhc-CCCeEEEEeC
Q 036635 456 ----------------------YNFVKDNNFSIGIVVVGEVPYAETKG-DNTNLTLPWPAPDIINNVCK-ATKCVVVLVS 511 (557)
Q Consensus 456 ----------------------~~~~~a~~~D~vIv~vg~~~~~~~~g-d~~~l~l~~~q~~lI~~v~~-~~~~VvV~~~ 511 (557)
.....++.+|++||++|.....+.++ ||.+|.||+.|.+||++|++ ++|+|||+++
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~~~~vVvVl~~ 551 (765)
T PRK15098 472 DFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLMN 551 (765)
T ss_pred hhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHhCcCEEEEEeC
Confidence 01122568999999999876555555 99999999999999999987 8899999999
Q ss_pred CCcccccccccccceeeeccCCCch-hHHHHHHHhCCCCCCccCCCC
Q 036635 512 GRPLVIEPYVEAMDALVAAWLPGSE-GQGVADALFGDSPFTGKLSRT 557 (557)
Q Consensus 512 g~P~~l~~~~~~v~Ail~a~~~g~~-g~A~advL~G~~~PsGkLPvT 557 (557)
|+|+++.++.++++|||++|+||++ |+|+||||||++|||||||+|
T Consensus 552 g~P~~l~~~~~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT 598 (765)
T PRK15098 552 GRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMS 598 (765)
T ss_pred CceeeccchhhcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccc
Confidence 9999995434599999999999999 999999999999999999998
No 2
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=1.1e-98 Score=842.33 Aligned_cols=492 Identities=29% Similarity=0.443 Sum_probs=408.4
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCHHHHHhcccccccccccHHHHHhcccceEEeCCCCCCCCCcCHHHHHHHHHHHHHHhh
Q 036635 1 MMYKDPKQPVEVRVKDLLSRMTLAEKIGQMTQIERVNATFDAMKNYFIGSVLSGGGSVPSPNATAQQWIDMVNDIQRGAM 80 (557)
Q Consensus 1 ~~~~d~~~~~~~~v~~ll~~mtl~ekvgql~~~~~~~~~~~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~~a~ 80 (557)
++|||+++++++|+++||++|||||||+||... . ..
T Consensus 40 ~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~--------------------~------------------------~~ 75 (779)
T PLN03080 40 YPFCNASLPIPARARSLVSLLTLDEKIAQLSNT--------------------A------------------------AG 75 (779)
T ss_pred CCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCC--------------------C------------------------CC
Confidence 589999999999999999999999999998410 0 02
Q ss_pred hcCCCCCcE-EEeeCCCCcccC-----------CCcccCCccccccccCCHHHHHHHHHHHHHHHHHc------CCCeee
Q 036635 81 ATRLGIPMI-YGVDAVHGHNNV-----------YKATIFPHNVGLGATRDPNLVKRIGAATALEVRAT------GIPYAF 142 (557)
Q Consensus 81 ~~~~~iP~~-~~~D~e~G~~~~-----------~~~t~fP~~~~laat~d~~l~~~~g~~~a~e~~a~------Gin~~~ 142 (557)
.+|+|||.+ ++.|+.||+... .++|.||+++++|||||+++++++|+++|+|+|++ |+++ |
T Consensus 76 vpRlGIP~~~~~~d~~hGv~~~~~g~~~~~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~-~ 154 (779)
T PLN03080 76 VPRLGIPPYEWWSESLHGLADNGPGVSFNSGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTF-W 154 (779)
T ss_pred CCcCCCCccceecccccccccCCCccccccCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcce-e
Confidence 478999999 999999998521 24699999999999999999999999999999998 6774 9
Q ss_pred ecccCcCCCCCCCccccccCCCHHHHHHHHH-HHhhccCCCCCccccCCCCccCCCCceeEeeccccCCCCCCC---CCc
Q 036635 143 APCIAVCRDPRWGRCYESYSEDAKLVQQFSV-IISGLQGDAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTVN---GIN 218 (557)
Q Consensus 143 aPv~Dv~~~p~~gr~~rsfgeDp~~v~~~a~-~v~G~q~~~~~~~~~~g~~~~~g~~gV~a~~KHFpg~g~~~~---~~~ 218 (557)
+|++||+|||+|||++|||||||+++++|++ ||+|+|+.+..+. +.. .-.|..+|++|+||||||+.+.. +++
T Consensus 155 aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~-~~~--~~~~~~~V~a~~KHF~g~~~e~~~~~~r~ 231 (779)
T PLN03080 155 APNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKV-RDD--GEDGKLMLSACCKHYTAYDLEKWGNFSRY 231 (779)
T ss_pred ecccccccCCCcCccccCcCCCHHHHHHHHHHHHHHhcCCCcccc-ccc--ccCCCceEEEECCeeeCCCccccCCcccc
Confidence 9999999999999999999999999999996 9999996310000 000 00001249999999999998653 344
Q ss_pred CCCccCCHHHHHhhcCHHHHHHHhcc-cCeeeecccCcCCccccCCHHHHHHHHHhhcCCCeEEEcchhhhhhhcCCCC-
Q 036635 219 ENNTIVTTEQLFDIHMPPYWSALDQR-VSTVMISYSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPH- 296 (557)
Q Consensus 219 ~~~~~~~~~~l~~~~l~pF~~~i~~g-~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~visD~~~m~~~~~~~~- 296 (557)
..++.+++++|+|+||+||+.+|++| +.+||||||.+||+|+|.|+++|+. ||+||||+|+|||||++|..+...++
T Consensus 232 ~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~ 310 (779)
T PLN03080 232 TFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTY 310 (779)
T ss_pred CccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccc
Confidence 45667899999999999999999987 6799999999999999999999986 99999999999999999998876443
Q ss_pred -CChHHHHHHHHHcCCCeecCCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCcc----chhcc
Q 036635 297 -SNYTYSVQESVLAGLDMIMVPYLYPEFINILTDLVNKKVIPMRRINDAVKRILRVKFEMGLFENPYADNS----FVNKL 371 (557)
Q Consensus 297 -~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~id~av~Ril~~k~~~gl~~~~~~~~~----~~~~~ 371 (557)
.+..+++++||+||+||+|.. .+.+.|.+||++|+|++++||+|++|||++|+++|+|++|+.... ....+
T Consensus 311 ~~~~~ea~~~Al~AG~Dl~~~~----~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v 386 (779)
T PLN03080 311 TKSPEDAVADVLKAGMDINCGS----YMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNV 386 (779)
T ss_pred cCCHHHHHHHHHHcCCCcccCc----hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCccccccccccccc
Confidence 356788899999999999843 245789999999999999999999999999999999997643211 12467
Q ss_pred CCHHHHHHHHHHhc-------C-CCccCCCCC-CCeEEEEcccCCcccccCCCceeecCCCCCCCccccccHHHHHHhhc
Q 036635 372 GCKEHRELAREAQQ-------S-PPVLPLEKK-LPKILVAGTHADNLGYQCGGWTIEWQGDSGNNYTEGTTILRAINATV 442 (557)
Q Consensus 372 ~~~~h~~lA~~~a~-------~-~~~LPL~~~-~~kIaviG~~a~~~~~~~gg~~~~~~g~~~~~~~~~~t~l~~l~~~~ 442 (557)
++++|+++|+++++ | +++|||+++ .++|+||||+|+....++|+|+. . ..+..+++++|++++
T Consensus 387 ~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~-------~-~~~~~t~~~gl~~~~ 458 (779)
T PLN03080 387 CTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTG-------V-PCQPTTLFKGLQAYV 458 (779)
T ss_pred CCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCC-------C-CCCCCCHHHHHHHHh
Confidence 89999999999998 4 469999864 36999999999988777776531 1 135689999999875
Q ss_pred CCCceEEecCCCC-----------hhhhhccCCCeEEEEEecCCCCcCCC-CCCCccCCCChHHHHHHHhc-C-CCeEEE
Q 036635 443 DPSTQVVFSERPD-----------YNFVKDNNFSIGIVVVGEVPYAETKG-DNTNLTLPWPAPDIINNVCK-A-TKCVVV 508 (557)
Q Consensus 443 ~~~~~~~~~~~~~-----------~~~~~a~~~D~vIv~vg~~~~~~~~g-d~~~l~l~~~q~~lI~~v~~-~-~~~VvV 508 (557)
. .+.|..+.+ .....++.+|++||++|.+...+.++ ||.+|.||..|.+||++|++ + +|+|||
T Consensus 459 ~---~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvV 535 (779)
T PLN03080 459 K---KTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLV 535 (779)
T ss_pred h---cceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEE
Confidence 3 233443321 11233568999999999877655555 99999999999999999997 4 479999
Q ss_pred EeCCCccccccccc---ccceeeeccCCCch-hHHHHHHHhCCCCCCccCCCC
Q 036635 509 LVSGRPLVIEPYVE---AMDALVAAWLPGSE-GQGVADALFGDSPFTGKLSRT 557 (557)
Q Consensus 509 ~~~g~P~~l~~~~~---~v~Ail~a~~~g~~-g~A~advL~G~~~PsGkLPvT 557 (557)
+++|+|+++ +|.+ +++|||++||||++ |+|+||||||++|||||||+|
T Consensus 536 l~~g~Pv~l-~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT 587 (779)
T PLN03080 536 LTGGGPVDV-SFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMT 587 (779)
T ss_pred EeCCceeec-cchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeee
Confidence 999999999 4543 79999999999999 999999999999999999998
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-74 Score=596.82 Aligned_cols=358 Identities=35% Similarity=0.579 Sum_probs=309.1
Q ss_pred CCHHHHHhcccccccccccH--HHHHhcccceEEeCCCCCCCCCcCHHHHHHHHHHHHHHhhhcCCCCCcEEEeeCCCCc
Q 036635 21 MTLAEKIGQMTQIERVNATF--DAMKNYFIGSVLSGGGSVPSPNATAQQWIDMVNDIQRGAMATRLGIPMIYGVDAVHGH 98 (557)
Q Consensus 21 mtl~ekvgql~~~~~~~~~~--~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~~a~~~~~~iP~~~~~D~e~G~ 98 (557)
||++||++||.+.+...... ......++||++++. +|..+.+|++.++..++. .|++||+++++|+|||.
T Consensus 1 m~~~~k~~ql~~~g~~~~~e~~~~~~~~~~~g~il~~----~n~~~~~~~~~~~~~~~~----~r~~iplli~~D~egG~ 72 (397)
T COG1472 1 MTLEEKVGQLGIAGLELTPEEAARLADPLVGGIILFG----RNIDDREQLRALVAAIRE----ARLGIPLLIAIDQEGGR 72 (397)
T ss_pred CCccccceeeeccCccCCHHHHhhhhccCcceeEeec----cCccchHHHHHHHHHHhh----hccCCCeEEEEecCCCe
Confidence 89999999999987633322 234455699998774 566677777777776664 47799999999999999
Q ss_pred ccCCC--cccCCccccccccCCHHHHHHHHHHHHHHHHHcCCCeeeecccCcCCCCCCCccccc-cCCCHHHHHHHHH-H
Q 036635 99 NNVYK--ATIFPHNVGLGATRDPNLVKRIGAATALEVRATGIPYAFAPCIAVCRDPRWGRCYES-YSEDAKLVQQFSV-I 174 (557)
Q Consensus 99 ~~~~~--~t~fP~~~~laat~d~~l~~~~g~~~a~e~~a~Gin~~~aPv~Dv~~~p~~gr~~rs-fgeDp~~v~~~a~-~ 174 (557)
+.|.. +|.||+++++||+||+++++++|+.+|+|+|++||||+||||+||.|||+|||+.++ |||||++|+.|+. |
T Consensus 73 v~r~~~~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~Gin~~fAPvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~ 152 (397)
T COG1472 73 VQRLREGFTVFPAALALAATWDPELARKVGRVIAKELRALGINLDFAPVLDVARDPRWGRIGERSFGEDPELVALLAAAF 152 (397)
T ss_pred eeeccCCCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHcCCCccccceeecccCCCcCccccccCCCCHHHHHHHHHHH
Confidence 98874 799999999999999999999999999999999999999999999999999998655 9999999999996 9
Q ss_pred HhhccCCCCCccccCCCCccCCCCceeEeeccccCCCCCCCCCcCCCccCCHHHHHhhcCHHHHHHHhcc---cCeeeec
Q 036635 175 ISGLQGDAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTVNGINENNTIVTTEQLFDIHMPPYWSALDQR---VSTVMIS 251 (557)
Q Consensus 175 v~G~q~~~~~~~~~~g~~~~~g~~gV~a~~KHFpg~g~~~~~~~~~~~~~~~~~l~~~~l~pF~~~i~~g---~~~vM~s 251 (557)
|+|||+ .||++|+|||||||.++.|+|..+..++.+.|++.+++||+.+++++ +.++|++
T Consensus 153 i~Glq~-----------------~gv~at~KHFpGhG~~~~dsh~~~~~v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~ 215 (397)
T COG1472 153 IKGLQG-----------------AGVAATIKHFPGHGAVEGDSHYGLLPIDPRALRELYLPPFQPAIALGDDAAMTAHVA 215 (397)
T ss_pred HHHHhh-----------------CCceeeeccccCCCCCcCCcccccCCCChHHHHHhhccchHHHHHhccccceEEeee
Confidence 999994 79999999999999999999998777899999999999999999999 7888999
Q ss_pred ccCcCCccccCCHHHHHHHHHhhcCCCeEEEcchhhhhhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHHHHHHHHH
Q 036635 252 YSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLDMIMVPYLYPEFINILTDLV 331 (557)
Q Consensus 252 ~~~~~g~pa~~s~~~l~~lLR~~lgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av 331 (557)
|+.+|+.|+|+|+++|+++||++|||+|+|||||++|+++...++ +..+.+.++|+|||||+|.|++....+..+..++
T Consensus 216 y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~g-~~~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~~ 294 (397)
T COG1472 216 YPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAHG-SAADRAEAALKAGVDIVLVCNELYEAYLVVLELV 294 (397)
T ss_pred ccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhcc-CHHHHHHHHHhcCCCEEecCCchhHHHHHHHHhc
Confidence 999999999999999999999999999999999999999776433 3456677899999999999987554444444443
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCccchhccCCHHHHHHHHHHhc-------C-CCccCCCCCCCeEEEEc
Q 036635 332 NKKVIPMRRINDAVKRILRVKFEMGLFENPYADNSFVNKLGCKEHRELAREAQQ-------S-PPVLPLEKKLPKILVAG 403 (557)
Q Consensus 332 ~~g~i~~~~id~av~Ril~~k~~~gl~~~~~~~~~~~~~~~~~~h~~lA~~~a~-------~-~~~LPL~~~~~kIaviG 403 (557)
. +++++++++++|||++|+++|+|++|+++ +|+++++++++ | .++|||+++.++|+|+|
T Consensus 295 ~---~~~~~i~~~v~Ril~~k~~~~~f~~~~~~----------~~~~~a~~~~~~~~~ll~n~~~~~p~~~~~~~i~v~g 361 (397)
T COG1472 295 G---LSEARLDDAVRRILRVKFKLGLFENPYSS----------EHRALAREAARESIVLLKNDGGLLPLKKSAKRIAVIG 361 (397)
T ss_pred C---CcHHHHHHHHHHHHHHHHHhccccCCCch----------hhHHHHHHHHHHHHHHHHhccCCCccccccCceEEEc
Confidence 3 99999999999999999999999999865 67777777665 4 47999995456999999
Q ss_pred ccCCcccccCCCceeecC
Q 036635 404 THADNLGYQCGGWTIEWQ 421 (557)
Q Consensus 404 ~~a~~~~~~~gg~~~~~~ 421 (557)
|+++.. . |+|+ .+.
T Consensus 362 ~~~~~~-~--g~~~-~~~ 375 (397)
T COG1472 362 PYADDG-D--GGWS-VGG 375 (397)
T ss_pred cccccC-C--CCee-ecc
Confidence 999887 4 7777 544
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=2.6e-73 Score=578.26 Aligned_cols=295 Identities=34% Similarity=0.544 Sum_probs=252.2
Q ss_pred CHHHHHhcccccccccccHHHHHhcccceEEeCCCCCCCCCcCHHHHHHHHHHHHHHhhhcCCCCCcEEEeeCCCCcccC
Q 036635 22 TLAEKIGQMTQIERVNATFDAMKNYFIGSVLSGGGSVPSPNATAQQWIDMVNDIQRGAMATRLGIPMIYGVDAVHGHNNV 101 (557)
Q Consensus 22 tl~ekvgql~~~~~~~~~~~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~~a~~~~~~iP~~~~~D~e~G~~~~ 101 (557)
|||||||||++ ...+.|+++++||+++ ++++..+++.+|.....++++||+++++|+|||.+.+
T Consensus 1 TleeKigQl~~-----~~~~~i~~~~vGgv~~-----------~~~~~~~~~~~~~~~~~~~~~iP~~i~~D~egG~~~~ 64 (299)
T PF00933_consen 1 TLEEKIGQLFM-----ELKELIKEYHVGGVIL-----------PEQLKQLTQSLQAISEQSRLGIPLLIAIDQEGGIVQR 64 (299)
T ss_dssp -HHHHHHHTEE-----HHHHHHHHHTCSEEEE-----------HHHHHHHHHHHHHHHCCGCGTCT-EEEEEETTSTTTS
T ss_pred CHHHHHHHHHH-----HHHHHHhcCCccEEEc-----------HHHHHHHHHHHHHHhhccccCCCeEEEEcCCCceEec
Confidence 89999999998 5678899999999996 6788888888888887789999999999999999988
Q ss_pred CC--cccCCccccccccCCHHHHHHHHHHHHHHHHHcCCCeeeecccCcCCCCCCCccccccCCCHHHHHHHHH-HHhhc
Q 036635 102 YK--ATIFPHNVGLGATRDPNLVKRIGAATALEVRATGIPYAFAPCIAVCRDPRWGRCYESYSEDAKLVQQFSV-IISGL 178 (557)
Q Consensus 102 ~~--~t~fP~~~~laat~d~~l~~~~g~~~a~e~~a~Gin~~~aPv~Dv~~~p~~gr~~rsfgeDp~~v~~~a~-~v~G~ 178 (557)
.+ +|.||+++++|+|||+++++++|+.+|+|++++|||++||||+||.++|+|||+.|||||||++|++|+. ||+|+
T Consensus 65 ~~~~~t~~P~~~~l~at~d~~~a~~~g~~~a~el~~~Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~ 144 (299)
T PF00933_consen 65 LGGGFTAFPSPMALAATWDPELAYEVGRIIARELRALGINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGL 144 (299)
T ss_dssp TTTTS---S-HHHHHHHTCHHHHHHHHHHHHHHHHHTT-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHH
T ss_pred CCCcCccCcchhhhhhhccchHHHHHHHHHHHHHHHhhhccccccceeeeeeccccccccccchhHHHHHHHHHHHhccc
Confidence 76 4999999999999999999999999999999999999999999999999999999999999999999996 99999
Q ss_pred cCCCCCccccCCCCccCCCCceeEeeccccCCCCCCCCCcCCCccCCHHHHHhhcCHHHHHHH-hcccCeeeecccCcCC
Q 036635 179 QGDAPSKQVKKGRPFVGGKDKVAACAKHYVGDGGTVNGINENNTIVTTEQLFDIHMPPYWSAL-DQRVSTVMISYSSING 257 (557)
Q Consensus 179 q~~~~~~~~~~g~~~~~g~~gV~a~~KHFpg~g~~~~~~~~~~~~~~~~~l~~~~l~pF~~~i-~~g~~~vM~s~~~~~g 257 (557)
|+ .||++|+||||||+..+.+.+.....++.++|++.||+||+.+| ++|+.+||+||+.+|+
T Consensus 145 q~-----------------~gv~~~~KHFpG~~~~d~~~~~~~~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~ 207 (299)
T PF00933_consen 145 QG-----------------AGVAATAKHFPGHGAQDSHRDLPSVDVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDG 207 (299)
T ss_dssp HC-----------------TTSEEEEEEETTGGCSCTTTTTEEEE--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTT
T ss_pred cc-----------------ccccccccccccccccccccccceecCCcccccchhcccchhcccccccceeeeeccccCC
Confidence 93 79999999999995544433333344689999999999999999 8899999999999999
Q ss_pred ccccCCHHHHHHHHHhhcCCCeEEEcchhhhhhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHHHHHHHHHHcCCCC
Q 036635 258 KKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLDMIMVPYLYPEFINILTDLVNKKVIP 337 (557)
Q Consensus 258 ~pa~~s~~~l~~lLR~~lgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~ 337 (557)
+|+|+|+++|+++||++|||+|+|||||++|+++...++ ..+++++||+||+||+|+|.+....++.|.++|++|.++
T Consensus 208 ~pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~--~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~ 285 (299)
T PF00933_consen 208 TPASLSPKILTDLLRNELGFDGVVISDDLEMGALSSNYS--IEEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRIS 285 (299)
T ss_dssp EEGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHCCTT--HHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSG
T ss_pred ccchhhhccchhhCcCcccCCCeEecccchHHHHHhccc--cchHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999988654 578999999999999999988877789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 036635 338 MRRINDAVKRILRV 351 (557)
Q Consensus 338 ~~~id~av~Ril~~ 351 (557)
++|||+|++|||++
T Consensus 286 ~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 286 EERLDEAVRRILRL 299 (299)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=2.4e-62 Score=500.49 Aligned_cols=278 Identities=20% Similarity=0.298 Sum_probs=245.9
Q ss_pred cHHHHHhcccceEEeCCCCCCCCCcCHHHHHHHHHHHHHHhhhcCCCCCcEEEeeCCCCcccCC--CcccCCcccccccc
Q 036635 39 TFDAMKNYFIGSVLSGGGSVPSPNATAQQWIDMVNDIQRGAMATRLGIPMIYGVDAVHGHNNVY--KATIFPHNVGLGAT 116 (557)
Q Consensus 39 ~~~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~~a~~~~~~iP~~~~~D~e~G~~~~~--~~t~fP~~~~laat 116 (557)
..++|+++++|||++++ +|..+++|++++++.+|+.+ ++|++|++|+|||.++|+ ++|.||+++++|++
T Consensus 17 ~~~~i~~~~~gGvilf~----~n~~~~~q~~~l~~~l~~~~-----~~plli~iD~EgG~v~rl~~~~t~~P~~~~laat 87 (337)
T PRK05337 17 ERERLQHPLVGGVILFA----RNFEDPAQLRELTAAIRAAV-----RPPLLIAVDQEGGRVQRFREGFTRLPAMQSFGAL 87 (337)
T ss_pred HHHHHHccCceEEEEEC----CCCCCHHHHHHHHHHHHHhc-----CCCCEEEEecCCCEeeecCCCCCCCCCHHHHHhh
Confidence 45789999999999995 56779999999999999765 799999999999998764 57899999999999
Q ss_pred CC------HHHHHHHHHHHHHHHHHcCCCeeeecccCcCCCCCCCccccccCCCHHHHHHHHH-HHhhccCCCCCccccC
Q 036635 117 RD------PNLVKRIGAATALEVRATGIPYAFAPCIAVCRDPRWGRCYESYSEDAKLVQQFSV-IISGLQGDAPSKQVKK 189 (557)
Q Consensus 117 ~d------~~l~~~~g~~~a~e~~a~Gin~~~aPv~Dv~~~p~~gr~~rsfgeDp~~v~~~a~-~v~G~q~~~~~~~~~~ 189 (557)
|| +++++++|+++|+|+|++||||+||||+||.+++.| +..|||||||++|++|+. |++|||
T Consensus 88 ~d~~~~~~~~la~~~g~~~a~Elra~Gin~~~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq---------- 156 (337)
T PRK05337 88 WDRDPLEALKLAEEAGWLMAAELRACGIDLSFAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMH---------- 156 (337)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHhCCCccccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHH----------
Confidence 99 899999999999999999999999999999844332 448999999999999996 999999
Q ss_pred CCCccCCCCceeEeeccccCCCCCCCCCcCCCccC--CHHHHHhhcCHHHHHHHhcccCeeeec---ccCcCCccccCCH
Q 036635 190 GRPFVGGKDKVAACAKHYVGDGGTVNGINENNTIV--TTEQLFDIHMPPYWSALDQRVSTVMIS---YSSINGKKMHANK 264 (557)
Q Consensus 190 g~~~~~g~~gV~a~~KHFpg~g~~~~~~~~~~~~~--~~~~l~~~~l~pF~~~i~~g~~~vM~s---~~~~~g~pa~~s~ 264 (557)
+.||++|+|||||||.+..|+|...+.. +.++|++.||+||+.+|++|+.+||+| |+.+|+.|+|+|+
T Consensus 157 -------~~gv~~~~KHFpG~G~~~~dsh~~~~~~~~~~~el~~~~l~PF~~ai~~g~~~vM~aHv~y~~id~~Pa~~S~ 229 (337)
T PRK05337 157 -------AAGMAATGKHFPGHGAVEADSHVETPVDERPLEEIRAEDMAPFRALIAAGLDAVMPAHVIYPQVDPRPAGFSR 229 (337)
T ss_pred -------HCCCEEEecccCCCCCCcCCCCCCCCCCCCCHHHHHhhhHHHHHHHHhcCCCEEEeCceeccCCCCCCCcCCH
Confidence 3799999999999999999999877654 568999999999999999999999999 7888999999999
Q ss_pred HHHHHHHHhhcCCCeEEEcchhhhhhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHHHHHHHHHHcCCCCHHHHHHH
Q 036635 265 ELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLDMIMVPYLYPEFINILTDLVNKKVIPMRRINDA 344 (557)
Q Consensus 265 ~~l~~lLR~~lgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~id~a 344 (557)
++|+++||+||||+|+|||||++|+++... .++.+++++||+||+||+|+|++.+ ....+.+++.+ +.+
T Consensus 230 ~~l~~lLR~elGF~G~ViSD~l~m~a~~~~--~~~~~~~~~al~AG~Dl~l~~~~~~-~~~~~~~~l~~--------~~~ 298 (337)
T PRK05337 230 YWLQDILRQELGFDGVIFSDDLSMEGAAVA--GDYAERAQAALDAGCDMVLVCNNRD-GAVSVLDNLSP--------PIS 298 (337)
T ss_pred HHHHHHHHHhcCCCEEEEecchhhhhhhhc--CCHHHHHHHHHHcCCCEEeeCCCHH-HHHHHHHHHHh--------hcc
Confidence 999999999999999999999999886542 2457789999999999999998763 45667777755 677
Q ss_pred HHHHHHHHHH
Q 036635 345 VKRILRVKFE 354 (557)
Q Consensus 345 v~Ril~~k~~ 354 (557)
.+|+++++.+
T Consensus 299 ~~~~~~~~~~ 308 (337)
T PRK05337 299 AERLTRLYGR 308 (337)
T ss_pred HHHHHHHhcc
Confidence 8888888766
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=99.92 E-value=2.9e-25 Score=217.49 Aligned_cols=163 Identities=34% Similarity=0.493 Sum_probs=118.3
Q ss_pred CCccCCCCCCCeEEEEcccCCcccccCCCceeecCCCCCCCccccccHHHHHHhhcCCCceEEecCC---CC-----hhh
Q 036635 387 PPVLPLEKKLPKILVAGTHADNLGYQCGGWTIEWQGDSGNNYTEGTTILRAINATVDPSTQVVFSER---PD-----YNF 458 (557)
Q Consensus 387 ~~~LPL~~~~~kIaviG~~a~~~~~~~gg~~~~~~g~~~~~~~~~~t~l~~l~~~~~~~~~~~~~~~---~~-----~~~ 458 (557)
+++|||+++.+||+|+|+++.....+++||+.. ...+..++++++++++........... .+ ...
T Consensus 8 ~~~LPL~~~~~~v~viG~~~~~~~~~g~g~~~~-------~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (227)
T PF01915_consen 8 GNLLPLKPDKKKVAVIGPNADNPVAQGGGSGNV-------NPGYGVTPLDALKQRFGNAGVVVPEGGDAVDDDEGIDEAV 80 (227)
T ss_dssp CG--SB-TTSTEEEEESTTTTSHHHCHBSTTSS-------TCSTHBHHHHHHHHHHHTTSEEEECCCCCCCCCSCHHHHH
T ss_pred CCCCCCCCCCCEEEEEcCccccccccCCccccc-------CccccccHHhhhccccCCCceEEeeeccccccccchHHHH
Confidence 459999987449999999999877677665322 234678999999998765544432211 11 112
Q ss_pred hhccCCCeEEEEEecCCCCcC-------CCCCCCccCCCChHHHHHHHhc-CCCeEEEEeCCCcccccccccccceeeec
Q 036635 459 VKDNNFSIGIVVVGEVPYAET-------KGDNTNLTLPWPAPDIINNVCK-ATKCVVVLVSGRPLVIEPYVEAMDALVAA 530 (557)
Q Consensus 459 ~~a~~~D~vIv~vg~~~~~~~-------~gd~~~l~l~~~q~~lI~~v~~-~~~~VvV~~~g~P~~l~~~~~~v~Ail~a 530 (557)
..++.+|++||+++..+ .|. +.|+.++.+|..|.++|+++++ ++|+|||+++|+||++.+|.++++|||++
T Consensus 81 ~~~~~aD~vIv~~~~~~-~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~~~~Ivvv~~~~P~~l~~~~~~~~Ail~~ 159 (227)
T PF01915_consen 81 AAAKEADVVIVFVGRPS-GEGNDNNTEGESDRSDLALPANQQELIKAVAAAGKKVIVVVNSGNPYDLDPWEDNVDAILAA 159 (227)
T ss_dssp HHHHCSSEEEEEEETTS-BCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHHSCEEEEEE-SSGGCGHCCHHC-SEEEEE
T ss_pred HHhhcCCEEEEeccccc-cccccccccccCCcccccchhhHHHHHHHHHHhcCCeEEEEecCCccccHHHHhhhceEeec
Confidence 23567899999999432 222 2588899999999999999988 69999999999999999988899999999
Q ss_pred cCCCch-hHHHHHHHhCCCCCCccCCCC
Q 036635 531 WLPGSE-GQGVADALFGDSPFTGKLSRT 557 (557)
Q Consensus 531 ~~~g~~-g~A~advL~G~~~PsGkLPvT 557 (557)
|++|++ ++|++|+|||+++||||||+|
T Consensus 160 ~~~g~~~~~A~advL~G~~~PsGkLPvT 187 (227)
T PF01915_consen 160 YYPGQEGGEAIADVLFGDVNPSGKLPVT 187 (227)
T ss_dssp ES-GSBHHHHHHHHHTTSS---B--SS-
T ss_pred cccchHHHHHHHHHHcCCCCCCCCccee
Confidence 999999 999999999999999999998
No 7
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=72.25 E-value=16 Score=35.94 Aligned_cols=91 Identities=14% Similarity=-0.037 Sum_probs=61.5
Q ss_pred cCHHHHHHHhcccCeeeecccCcCCccccCCHHHHHHHHHhhcCCCeEEEcchhhhhhhcCCCCCChHHHHHHHHHcCCC
Q 036635 233 HMPPYWSALDQRVSTVMISYSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLD 312 (557)
Q Consensus 233 ~l~pF~~~i~~g~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D 312 (557)
++.-.+++.+.|+.+||+--.-|..----.+++.| .+++++. +=.|+-|..- .. .+.+.+|++-|+|
T Consensus 147 D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l-~~i~e~~--~vpVivdAGI----gt------~sDa~~AmElGaD 213 (267)
T CHL00162 147 DPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNL-QIIIENA--KIPVIIDAGI----GT------PSEASQAMELGAS 213 (267)
T ss_pred CHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHH-HHHHHcC--CCcEEEeCCc----CC------HHHHHHHHHcCCC
Confidence 34566788899999999954434222233577777 5777764 4567777442 11 3457899999999
Q ss_pred eecCC------CChHHHHHHHHHHHHcCCC
Q 036635 313 MIMVP------YLYPEFINILTDLVNKKVI 336 (557)
Q Consensus 313 ~~l~~------~~~~~~~~~l~~av~~g~i 336 (557)
=+|.. .++.+...++..||+.|++
T Consensus 214 gVL~nSaIakA~dP~~mA~a~~~AV~AGR~ 243 (267)
T CHL00162 214 GVLLNTAVAQAKNPEQMAKAMKLAVQAGRL 243 (267)
T ss_pred EEeecceeecCCCHHHHHHHHHHHHHHHHH
Confidence 99863 3566667778888877753
No 8
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=70.81 E-value=12 Score=36.39 Aligned_cols=91 Identities=14% Similarity=-0.016 Sum_probs=57.5
Q ss_pred cCHHHHHHHhcccCeeeecccCcCCccccCCHHHHHHHHHhhcCCCeEEEcchhhhhhhcCCCCCChHHHHHHHHHcCCC
Q 036635 233 HMPPYWSALDQRVSTVMISYSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLD 312 (557)
Q Consensus 233 ~l~pF~~~i~~g~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D 312 (557)
++.-.+++.+.|+.+||+--.-|..----.+++.| .++|++. +=-||-|.+- +. ...+..|++-|+|
T Consensus 133 D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l-~~i~~~~--~vPvIvDAGi-G~---------pSdaa~AMElG~d 199 (247)
T PF05690_consen 133 DPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNL-RIIIERA--DVPVIVDAGI-GT---------PSDAAQAMELGAD 199 (247)
T ss_dssp -HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHH-HHHHHHG--SSSBEEES----S---------HHHHHHHHHTT-S
T ss_pred CHHHHHHHHHCCCCEEEecccccccCcCCCCHHHH-HHHHHhc--CCcEEEeCCC-CC---------HHHHHHHHHcCCc
Confidence 34556788899999999965444322334677777 5778887 4456667742 21 2346799999999
Q ss_pred eecCC------CChHHHHHHHHHHHHcCCC
Q 036635 313 MIMVP------YLYPEFINILTDLVNKKVI 336 (557)
Q Consensus 313 ~~l~~------~~~~~~~~~l~~av~~g~i 336 (557)
-+|+. .++.....++..||+.|++
T Consensus 200 aVLvNTAiA~A~dPv~MA~Af~~AV~AGR~ 229 (247)
T PF05690_consen 200 AVLVNTAIAKAKDPVAMARAFKLAVEAGRL 229 (247)
T ss_dssp EEEESHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred eeehhhHHhccCCHHHHHHHHHHHHHHHHH
Confidence 99973 3555566777888777654
No 9
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=61.79 E-value=2.1e+02 Score=30.92 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=56.5
Q ss_pred HHhcccCeeeecccCcCCc-----cccCCHHHHHHHHHhhcCCCeEEEcchhhhhhhcCCCCCChHHHHHHHH-HcCCCe
Q 036635 240 ALDQRVSTVMISYSSINGK-----KMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESV-LAGLDM 313 (557)
Q Consensus 240 ~i~~g~~~vM~s~~~~~g~-----pa~~s~~~l~~lLR~~lgf~G~visD~~~m~~~~~~~~~~~~~~~~~al-~AG~D~ 313 (557)
.|+.+...+|.+.+++.|+ .|+-++-+++.+|+-=+.. |.-+...++ |+ .+|+ +-=.|+
T Consensus 60 ~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~AepGE-----------Fs---~RAFLNgK~DL 124 (454)
T COG0486 60 IIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLAEPGE-----------FS---KRAFLNGKLDL 124 (454)
T ss_pred EeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeecCCCc-----------ch---HHHHhcCCccH
Confidence 4566677788888899886 4677888888887754433 122222221 22 2333 333444
Q ss_pred ecC--------CCChHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHcC-CCCCCC
Q 036635 314 IMV--------PYLYPEFINILTDLVN--KKVIPMRRINDAVKRILRVKFEMG-LFENPY 362 (557)
Q Consensus 314 ~l~--------~~~~~~~~~~l~~av~--~g~i~~~~id~av~Ril~~k~~~g-l~~~~~ 362 (557)
.-. +.+. .+...|++ +|.+ .++|++-.++++.+...+- ..|.|-
T Consensus 125 tqAEai~dLI~A~te----~a~r~A~~~l~G~l-s~~i~~lr~~li~~~a~vEa~IDfpe 179 (454)
T COG0486 125 TQAEAIADLIDAKTE----QAARIALRQLQGAL-SQLINELREALLELLAQVEANIDFPE 179 (454)
T ss_pred HHHHHHHHHHhCCCH----HHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHheEeCCCCc
Confidence 310 1111 23333333 5776 5677777888888776653 245553
No 10
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=56.09 E-value=39 Score=34.64 Aligned_cols=87 Identities=10% Similarity=-0.065 Sum_probs=58.7
Q ss_pred HHHHHHhcccCeeee-cccCcCCccccCCHHHHHHHHHhhcCCCeEEEcchhhhhhhcCCCCCChHHHHHHHHHcCCCee
Q 036635 236 PYWSALDQRVSTVMI-SYSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLDMI 314 (557)
Q Consensus 236 pF~~~i~~g~~~vM~-s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~ 314 (557)
-.+++.+.|+.+||+ +-..=.|.+.+ ++..|..+.+ + .+--|+.|.+--. .+.+.+|++-|+|=+
T Consensus 210 ~a~~l~~~g~~avmPl~~pIGsg~gv~-~p~~i~~~~e-~--~~vpVivdAGIg~----------~sda~~AmelGadgV 275 (326)
T PRK11840 210 AAKRLEDAGAVAVMPLGAPIGSGLGIQ-NPYTIRLIVE-G--ATVPVLVDAGVGT----------ASDAAVAMELGCDGV 275 (326)
T ss_pred HHHHHHhcCCEEEeeccccccCCCCCC-CHHHHHHHHH-c--CCCcEEEeCCCCC----------HHHHHHHHHcCCCEE
Confidence 345666779999999 43333566655 8888865544 4 5667888865321 345789999999999
Q ss_pred cCCC------ChHHHHHHHHHHHHcCCC
Q 036635 315 MVPY------LYPEFINILTDLVNKKVI 336 (557)
Q Consensus 315 l~~~------~~~~~~~~l~~av~~g~i 336 (557)
|..+ ++...-+++..||+.|++
T Consensus 276 L~nSaIa~a~dPv~Ma~A~~~av~aGr~ 303 (326)
T PRK11840 276 LMNTAIAEAKNPVLMARAMKLAVEAGRL 303 (326)
T ss_pred EEcceeccCCCHHHHHHHHHHHHHHHHH
Confidence 8743 454556777777776653
No 11
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=53.55 E-value=32 Score=24.37 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=26.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Q 036635 326 ILTDLVNKKVIPMRRINDAVKRILRVKFEMG 356 (557)
Q Consensus 326 ~l~~av~~g~i~~~~id~av~Ril~~k~~~g 356 (557)
..+..++...-+.+.|+..|..+|.+|..+|
T Consensus 12 e~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 12 ELVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 3455667778889999999999999999988
No 12
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=52.42 E-value=54 Score=31.90 Aligned_cols=88 Identities=13% Similarity=-0.038 Sum_probs=59.4
Q ss_pred HHHHHHhcccCeeeecccCcCCccccCCHHHHHHHHHhhcCCCeEEEcchhhhhhhcCCCCCChHHHHHHHHHcCCCeec
Q 036635 236 PYWSALDQRVSTVMISYSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLDMIM 315 (557)
Q Consensus 236 pF~~~i~~g~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l 315 (557)
--+++.+.|+.+||.--.-|..----.|++.| .+++++. +--||-|..--. ...+..+++-|+|-+|
T Consensus 143 ~arrLee~GcaavMPl~aPIGSg~G~~n~~~l-~iiie~a--~VPviVDAGiG~----------pSdAa~aMElG~DaVL 209 (262)
T COG2022 143 LARRLEEAGCAAVMPLGAPIGSGLGLQNPYNL-EIIIEEA--DVPVIVDAGIGT----------PSDAAQAMELGADAVL 209 (262)
T ss_pred HHHHHHhcCceEeccccccccCCcCcCCHHHH-HHHHHhC--CCCEEEeCCCCC----------hhHHHHHHhcccceee
Confidence 34566778999999965444322334677777 6888886 777888876411 1235799999999999
Q ss_pred CCC------ChHHHHHHHHHHHHcCCC
Q 036635 316 VPY------LYPEFINILTDLVNKKVI 336 (557)
Q Consensus 316 ~~~------~~~~~~~~l~~av~~g~i 336 (557)
+.. |+...-.++.-||+.|++
T Consensus 210 ~NTAiA~A~DPv~MA~Af~~Av~AGrl 236 (262)
T COG2022 210 LNTAIARAKDPVAMARAFALAVEAGRL 236 (262)
T ss_pred hhhHhhccCChHHHHHHHHHHHHHhHH
Confidence 743 444455677777777754
No 13
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=52.36 E-value=60 Score=31.94 Aligned_cols=85 Identities=14% Similarity=-0.005 Sum_probs=54.8
Q ss_pred HHHHHhcccCeeee--cccCcCCccccCCHHHHHHHHHhhcCCCeEEEcchhhhhhhcCCCCCChHHHHHHHHHcCCCee
Q 036635 237 YWSALDQRVSTVMI--SYSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLDMI 314 (557)
Q Consensus 237 F~~~i~~g~~~vM~--s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~ 314 (557)
-+++.+.|+.+||+ +-.. .|. .-.++.+|. .+|++ ++--||-|..- . -.+.+.++++.|+|-+
T Consensus 137 ar~l~~~G~~~vmPlg~pIG-sg~-Gi~~~~~I~-~I~e~--~~vpVI~egGI----~------tpeda~~AmelGAdgV 201 (248)
T cd04728 137 AKRLEDAGCAAVMPLGSPIG-SGQ-GLLNPYNLR-IIIER--ADVPVIVDAGI----G------TPSDAAQAMELGADAV 201 (248)
T ss_pred HHHHHHcCCCEeCCCCcCCC-CCC-CCCCHHHHH-HHHHh--CCCcEEEeCCC----C------CHHHHHHHHHcCCCEE
Confidence 35566779999999 5443 232 223588885 56666 45567777432 1 1456789999999999
Q ss_pred cCCC------ChHHHHHHHHHHHHcCCC
Q 036635 315 MVPY------LYPEFINILTDLVNKKVI 336 (557)
Q Consensus 315 l~~~------~~~~~~~~l~~av~~g~i 336 (557)
++.. ++.....++..+++.|++
T Consensus 202 lV~SAIt~a~dP~~ma~af~~Av~aGr~ 229 (248)
T cd04728 202 LLNTAIAKAKDPVAMARAFKLAVEAGRL 229 (248)
T ss_pred EEChHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9743 344455667777766653
No 14
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=49.77 E-value=13 Score=23.86 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=13.1
Q ss_pred HHHHHHhcccCeeeecc
Q 036635 236 PYWSALDQRVSTVMISY 252 (557)
Q Consensus 236 pF~~~i~~g~~~vM~s~ 252 (557)
-++.++++|+++||+-|
T Consensus 12 ~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 12 SWRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHHT-SEEEES-
T ss_pred HHHHHHHcCCCEeeCCC
Confidence 46889999999999965
No 15
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=48.87 E-value=32 Score=22.51 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=23.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCC
Q 036635 333 KKVIPMRRINDAVKRILRVKFEMGLF 358 (557)
Q Consensus 333 ~g~i~~~~id~av~Ril~~k~~~gl~ 358 (557)
.|.|+.+.+-+++.||...+.+.|-.
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngRl 27 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGRL 27 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999988854
No 16
>PRK00208 thiG thiazole synthase; Reviewed
Probab=47.11 E-value=85 Score=30.98 Aligned_cols=84 Identities=12% Similarity=-0.031 Sum_probs=53.0
Q ss_pred HHHHHhcccCeeee--cccCcCCccccCCHHHHHHHHHhhcCCCeEEEcchhhhhhhcCCCCCChHHHHHHHHHcCCCee
Q 036635 237 YWSALDQRVSTVMI--SYSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLDMI 314 (557)
Q Consensus 237 F~~~i~~g~~~vM~--s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~ 314 (557)
-+++.+.|+..||+ +-+. .|.. -.++.++ ..++++. +=-||-|..- . -.+.+.++++.|+|-+
T Consensus 137 ak~l~~~G~~~vmPlg~pIG-sg~g-i~~~~~i-~~i~e~~--~vpVIveaGI----~------tpeda~~AmelGAdgV 201 (250)
T PRK00208 137 AKRLEEAGCAAVMPLGAPIG-SGLG-LLNPYNL-RIIIEQA--DVPVIVDAGI----G------TPSDAAQAMELGADAV 201 (250)
T ss_pred HHHHHHcCCCEeCCCCcCCC-CCCC-CCCHHHH-HHHHHhc--CCeEEEeCCC----C------CHHHHHHHHHcCCCEE
Confidence 35566779999999 5444 2332 2347776 4566653 4457777432 1 1456789999999999
Q ss_pred cCCC------ChHHHHHHHHHHHHcCC
Q 036635 315 MVPY------LYPEFINILTDLVNKKV 335 (557)
Q Consensus 315 l~~~------~~~~~~~~l~~av~~g~ 335 (557)
++.+ ++.....++..+|+.|+
T Consensus 202 lV~SAItka~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 202 LLNTAIAVAGDPVAMARAFKLAVEAGR 228 (250)
T ss_pred EEChHhhCCCCHHHHHHHHHHHHHHHH
Confidence 9743 34445566666666664
No 17
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=46.27 E-value=56 Score=20.99 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 036635 323 FINILTDLVNKKVIPMRRINDAVKRIL 349 (557)
Q Consensus 323 ~~~~l~~av~~g~i~~~~id~av~Ril 349 (557)
-+..|.+...+|.||++..++.-++||
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 457788999999999999999988886
No 18
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=45.44 E-value=46 Score=36.37 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=40.5
Q ss_pred hcccCeeeec-ccCcCCccccCCHHHHHHHHHhhcCCCeEEEcchhhhhhhcC-CCCCChHHHHHHHHHcCCCeecC
Q 036635 242 DQRVSTVMIS-YSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITS-PPHSNYTYSVQESVLAGLDMIMV 316 (557)
Q Consensus 242 ~~g~~~vM~s-~~~~~g~pa~~s~~~l~~lLR~~lgf~G~visD~~~m~~~~~-~~~~~~~~~~~~al~AG~D~~l~ 316 (557)
+.|+..|++. |..+-. ....... +=|++-+||+|.|+||.++.+..+- ....+.++...---.-|.|+.|.
T Consensus 49 ~~g~~~il~NtYhl~~r---~~~~~~~-gGlh~f~~w~g~ilTDSGgfQv~s~g~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 49 EFGAEILITNSYIIYRS---LREKALE-KGLHKLLGFDGPIMTDSGSYQLLVYGDVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred HhCCCEEEeeHHHHHhh---hhHHHHh-CCHHHHhCCCCCeEeccCCcEEEEcCCccCCHHHHHHHHHHhCCCEEeE
Confidence 5688888874 322111 0000111 2366778999999999998665442 11223334433334569999985
No 19
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=38.86 E-value=56 Score=24.00 Aligned_cols=34 Identities=3% Similarity=0.184 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 036635 321 PEFINILTDLVNKKVIPMRRINDAVKRILRVKFE 354 (557)
Q Consensus 321 ~~~~~~l~~av~~g~i~~~~id~av~Ril~~k~~ 354 (557)
+.+.+.|..++.+|.|+.+..++.+.+++..+.+
T Consensus 9 ~~~~~~L~~a~a~GrL~~~Ef~~R~~~a~~A~t~ 42 (53)
T PF08044_consen 9 ERAVDLLRAAFAEGRLSLDEFDERLDAAYAARTR 42 (53)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCcH
Confidence 4577899999999999999999999999877644
No 20
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.62 E-value=1.1e+02 Score=30.66 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=26.2
Q ss_pred HHHhhcCCCeEEEcchhhhhhhcCCCCCChHHHHHHHHHcCCCeecCC
Q 036635 270 YLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLDMIMVP 317 (557)
Q Consensus 270 lLR~~lgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~ 317 (557)
-+|+...|.=.|+.+.... +.+..|+.+|+|++|..
T Consensus 174 ~~k~~~p~~~~I~VEv~tl------------eea~~A~~~GaDiI~LD 209 (273)
T PRK05848 174 HARKNIPFTAKIEIECESL------------EEAKNAMNAGADIVMCD 209 (273)
T ss_pred HHHHhCCCCceEEEEeCCH------------HHHHHHHHcCCCEEEEC
Confidence 4588888755666666542 45688999999999964
No 21
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=35.39 E-value=5.1e+02 Score=26.57 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=34.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCeeee-cccCcCCCCCCCccccccCCCHHHHHHHHH-HHhhc
Q 036635 115 ATRDPNLVKRIGAATALEVRATGIPYAFA-PCIAVCRDPRWGRCYESYSEDAKLVQQFSV-IISGL 178 (557)
Q Consensus 115 at~d~~l~~~~g~~~a~e~~a~Gin~~~a-Pv~Dv~~~p~~gr~~rsfgeDp~~v~~~a~-~v~G~ 178 (557)
...|++...+.++. ..+...-+|++|++ |+--+.+. | ..-.+..||.++.++.. +.+.+
T Consensus 72 ~g~~~~~~~~aa~~-~~~~g~d~IdlN~gCP~~~v~~~---g-~Gs~ll~~p~~~~eiv~av~~a~ 132 (321)
T PRK10415 72 AGSDPKEMADAARI-NVESGAQIIDINMGCPAKKVNRK---L-AGSALLQYPDLVKSILTEVVNAV 132 (321)
T ss_pred eCCCHHHHHHHHHH-HHHCCCCEEEEeCCCCHHHHcCC---C-cccHHhcCHHHHHHHHHHHHHhc
Confidence 34688777666654 34444557777777 44222111 1 13457789999999875 55444
No 22
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=32.46 E-value=59 Score=34.20 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=14.4
Q ss_pred HHhhcCCCeEEEcchhhh
Q 036635 271 LKEKLKFKGFTISDWEGI 288 (557)
Q Consensus 271 LR~~lgf~G~visD~~~m 288 (557)
|.+=+||+|.|+||..+.
T Consensus 76 lH~fm~w~gpilTDSGgf 93 (372)
T PRK01008 76 LHQFIGRNAPIITDSGGF 93 (372)
T ss_pred HHHHhCCCCcccccCcce
Confidence 456689999999997654
No 23
>PRK12277 50S ribosomal protein L13e; Provisional
Probab=28.26 E-value=25 Score=28.16 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=29.5
Q ss_pred HHHHHcCCCeeeecccCcCCCCCCCccccccCCCHHHHHHHHHHHhhcc
Q 036635 131 LEVRATGIPYAFAPCIAVCRDPRWGRCYESYSEDAKLVQQFSVIISGLQ 179 (557)
Q Consensus 131 ~e~~a~Gin~~~aPv~Dv~~~p~~gr~~rsfgeDp~~v~~~a~~v~G~q 179 (557)
+||++.||+..+|+.+.|.-|++-- .. .++.|.++=+|..-++
T Consensus 37 ~ELkaaGi~~~~ArtiGI~VD~RRr--n~----~~eNVerLk~y~skL~ 79 (83)
T PRK12277 37 GELEAAGLDIKNARKLGIRVDKRRK--TV----HEENVEALKKFLEQLG 79 (83)
T ss_pred HHHHHcCCCHHHhcccCeeeccccc--CC----CHHHHHHHHHHHHHhc
Confidence 4899999999999999999887631 11 2445655544544443
No 24
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=27.78 E-value=1.3e+02 Score=31.26 Aligned_cols=69 Identities=20% Similarity=0.153 Sum_probs=43.6
Q ss_pred HHHHhcccCeeeec------cc--CcCCccccCCHHHHHHHHHhhcCCCeEEEcchhhhhhhcCCCCCChHHHHHHHHHc
Q 036635 238 WSALDQRVSTVMIS------YS--SINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLA 309 (557)
Q Consensus 238 ~~~i~~g~~~vM~s------~~--~~~g~pa~~s~~~l~~lLR~~lgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~A 309 (557)
+.++++|+++|-++ |. .++|.+...=.. +.+.-+---+++.-||.|-.--. .-.+++||.+
T Consensus 165 ~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltA-v~~~a~aa~~~~v~VIaDGGIr~----------~gDI~KALA~ 233 (343)
T TIGR01305 165 EELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSA-VIECADAAHGLKGHIISDGGCTC----------PGDVAKAFGA 233 (343)
T ss_pred HHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHH-HHHHHHHhccCCCeEEEcCCcCc----------hhHHHHHHHc
Confidence 57889999999876 22 345665322111 22332322356677888875421 2357899999
Q ss_pred CCCeecCC
Q 036635 310 GLDMIMVP 317 (557)
Q Consensus 310 G~D~~l~~ 317 (557)
|+|.+|+.
T Consensus 234 GAd~VMlG 241 (343)
T TIGR01305 234 GADFVMLG 241 (343)
T ss_pred CCCEEEEC
Confidence 99999975
No 25
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=27.42 E-value=1.1e+02 Score=30.73 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCCeecCCC
Q 036635 301 YSVQESVLAGLDMIMVPY 318 (557)
Q Consensus 301 ~~~~~al~AG~D~~l~~~ 318 (557)
+.+.+|++||+|++|..+
T Consensus 199 e~~~eAl~agaDiImLDN 216 (280)
T COG0157 199 EEAEEALEAGADIIMLDN 216 (280)
T ss_pred HHHHHHHHcCCCEEEecC
Confidence 346899999999999643
No 26
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=27.19 E-value=55 Score=31.71 Aligned_cols=53 Identities=26% Similarity=0.285 Sum_probs=41.7
Q ss_pred HHHHHHhcccCeeeecccCcCCccc-cCCHHHHHHHHHhhcCCCeEEEcchhhh
Q 036635 236 PYWSALDQRVSTVMISYSSINGKKM-HANKELVTEYLKEKLKFKGFTISDWEGI 288 (557)
Q Consensus 236 pF~~~i~~g~~~vM~s~~~~~g~pa-~~s~~~l~~lLR~~lgf~G~visD~~~m 288 (557)
-|+.|++..+.+||++||--.|.|- |.....+|.-|.+-+.+-|+.+=|-.-+
T Consensus 157 I~k~Al~~nAaavIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiIi 210 (224)
T COG2003 157 IFKEALKYNAAAVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHIII 210 (224)
T ss_pred HHHHHHHhcchhhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEEe
Confidence 3788999999999999998777653 4455677888999988888877776554
No 27
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=26.33 E-value=1.3e+02 Score=34.07 Aligned_cols=73 Identities=12% Similarity=0.098 Sum_probs=40.6
Q ss_pred hcccCeeeec-ccCcCCccccCCHHHHHHHHHhhcCCCeEEEcchhhhhhhcCC-CCCChHHHHHHHHHcCCCeecC
Q 036635 242 DQRVSTVMIS-YSSINGKKMHANKELVTEYLKEKLKFKGFTISDWEGIDRITSP-PHSNYTYSVQESVLAGLDMIMV 316 (557)
Q Consensus 242 ~~g~~~vM~s-~~~~~g~pa~~s~~~l~~lLR~~lgf~G~visD~~~m~~~~~~-~~~~~~~~~~~al~AG~D~~l~ 316 (557)
+.|+..|++. |..+ -.|-..-... .+=|.+-+||+|.|+||.++.+-.+-. ...+.++.+.-=-.-|.|+.|.
T Consensus 46 ~~g~~~il~NtYhl~-~~pg~~~~~~-~gGlH~f~~w~g~ilTDSGgfQv~s~g~~~~tpe~~i~~Q~~iGsDI~~~ 120 (639)
T PRK13534 46 KLGFDIVITNSYIIY-KTPELREKAL-EKGIHSLIGFDGPIMTDSGSFQLSVYGDVEVTNREIIEFQEKIGVDIGTI 120 (639)
T ss_pred HhCCCEEEehhhhhh-hCCchhHHHh-cCChHHHhCCCCCeEecCCceeeeecCccccCHHHHHHHHHHhCCCEEEE
Confidence 4688888884 3322 1121100001 123566789999999999987655421 1223333333333569999985
No 28
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=26.08 E-value=7.1e+02 Score=25.33 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=29.9
Q ss_pred HHHHHHH-HcCCCeecCCCCh---HHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHH
Q 036635 301 YSVQESV-LAGLDMIMVPYLY---PEFINILTDLVNKKV----IPMRRINDAVKRILRV 351 (557)
Q Consensus 301 ~~~~~al-~AG~D~~l~~~~~---~~~~~~l~~av~~g~----i~~~~id~av~Ril~~ 351 (557)
+.+.+++ ..|+|.+|++... +.....+.+.+..|. .+.+.+-+.++|.+..
T Consensus 205 ~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 263 (319)
T TIGR00737 205 EDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQL 263 (319)
T ss_pred HHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4567788 6899999986321 124456666666654 2334444455555544
No 29
>COG2306 Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]
Probab=25.54 E-value=66 Score=29.65 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=29.2
Q ss_pred CCCeecCCCChHH--HHHHHHHHHHcCCCCHHHHHHHHH
Q 036635 310 GLDMIMVPYLYPE--FINILTDLVNKKVIPMRRINDAVK 346 (557)
Q Consensus 310 G~D~~l~~~~~~~--~~~~l~~av~~g~i~~~~id~av~ 346 (557)
=.|++-.|+...+ ..+.|..|++.|.||.+..++|++
T Consensus 109 yLDi~a~p~ge~el~DeDEL~~Al~~GlIT~~qf~~Ay~ 147 (183)
T COG2306 109 YLDIIALPGGEAELLDEDELEDALRYGLITPEQFEKAYR 147 (183)
T ss_pred eEEEEEecCCCeEEecHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3677766765332 357899999999999999999987
No 30
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=24.39 E-value=1.6e+02 Score=25.49 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCCe
Q 036635 116 TRDPNLVKRIGAATALEVRATGIPY 140 (557)
Q Consensus 116 t~d~~l~~~~g~~~a~e~~a~Gin~ 140 (557)
+.|.+.++.+|..+|+.+.+.||+-
T Consensus 65 ~~n~~aa~~vG~~la~ra~~~gi~~ 89 (117)
T PRK05593 65 GGNKEAAKKVGKLIAERAKAKGIKQ 89 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCE
Confidence 6899999999999999999999986
No 31
>KOG1316 consensus Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=23.99 E-value=63 Score=33.23 Aligned_cols=22 Identities=32% Similarity=0.754 Sum_probs=15.9
Q ss_pred HHHHhhcCCCeEEEcchhhhhhhcC
Q 036635 269 EYLKEKLKFKGFTISDWEGIDRITS 293 (557)
Q Consensus 269 ~lLR~~lgf~G~visD~~~m~~~~~ 293 (557)
.+|+++|||.|+++- +|.++.+
T Consensus 214 ~~la~~LgF~~v~~N---Sm~AvsD 235 (464)
T KOG1316|consen 214 EFLAEELGFEGVIMN---SMDAVSD 235 (464)
T ss_pred HHHHHhcCCcccchh---hhhcccc
Confidence 468999999999863 4555543
No 32
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=23.97 E-value=1.2e+02 Score=24.18 Aligned_cols=60 Identities=20% Similarity=0.137 Sum_probs=39.4
Q ss_pred hhcCCCeEEEcchhhhhhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 036635 273 EKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVLAGLDMIMVPYLYPEFINILTDLVNKKVIPMRRINDAVKRI 348 (557)
Q Consensus 273 ~~lgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~id~av~Ri 348 (557)
+-+....++++++.. .....+..|.+.+++. +.+++.+.+...+++... .++|-+..++.
T Consensus 17 E~~a~G~~vi~~~~~--------------~~~~~~~~~~~~~~~~-~~~el~~~i~~ll~~~~~-~~~ia~~a~~~ 76 (92)
T PF13524_consen 17 EAMACGTPVISDDSP--------------GLREIFEDGEHIITYN-DPEELAEKIEYLLENPEE-RRRIAKNARER 76 (92)
T ss_pred HHHHCCCeEEECChH--------------HHHHHcCCCCeEEEEC-CHHHHHHHHHHHHCCHHH-HHHHHHHHHHH
Confidence 456677888888763 1345577888988876 777788888888775554 34444444443
No 33
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=23.17 E-value=7.8e+02 Score=26.31 Aligned_cols=116 Identities=13% Similarity=0.097 Sum_probs=66.0
Q ss_pred hcCHHHHHHHhcccCeeeecccCcCCccccCCHHHH---HHHHHhhcCCCeEEEcchhhhhhhcCCCCCChHHHHHHHHH
Q 036635 232 IHMPPYWSALDQRVSTVMISYSSINGKKMHANKELV---TEYLKEKLKFKGFTISDWEGIDRITSPPHSNYTYSVQESVL 308 (557)
Q Consensus 232 ~~l~pF~~~i~~g~~~vM~s~~~~~g~pa~~s~~~l---~~lLR~~lgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~ 308 (557)
.|+.--++..+.|+++|-.= ...| .++|+.. -.-||++++..=-+-|-+.+ +++ .-+-.+|++
T Consensus 157 ~yv~~akel~~~g~DSIciK--DmaG---lltP~~ayelVk~iK~~~~~pv~lHtH~Ts--G~a-------~m~ylkAvE 222 (472)
T COG5016 157 YYVELAKELLEMGVDSICIK--DMAG---LLTPYEAYELVKAIKKELPVPVELHTHATS--GMA-------EMTYLKAVE 222 (472)
T ss_pred HHHHHHHHHHHcCCCEEEee--cccc---cCChHHHHHHHHHHHHhcCCeeEEeccccc--chH-------HHHHHHHHH
Confidence 34444566667788776331 1112 2333222 24567777755555444432 111 113479999
Q ss_pred cCCCeecCC-----CC-hHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHc-CCCCCC
Q 036635 309 AGLDMIMVP-----YL-YPEFINILTDLVNK----KVIPMRRINDAVKRILRVKFEM-GLFENP 361 (557)
Q Consensus 309 AG~D~~l~~-----~~-~~~~~~~l~~av~~----g~i~~~~id~av~Ril~~k~~~-gl~~~~ 361 (557)
||+|++=.. .. .....+.+..|++. -.+..+.+.+.+.-...++.++ ++|+..
T Consensus 223 AGvD~iDTAisp~S~gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vrkkY~~~~~~~ 286 (472)
T COG5016 223 AGVDGIDTAISPLSGGTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVRKKYKGLLEPQ 286 (472)
T ss_pred hCcchhhhhhccccCCCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 999998321 10 01134556666654 2467889999988888888887 887753
No 34
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=23.09 E-value=86 Score=33.26 Aligned_cols=21 Identities=19% Similarity=0.028 Sum_probs=11.3
Q ss_pred CeeeecccCcCCccccCCHHH
Q 036635 246 STVMISYSSINGKKMHANKEL 266 (557)
Q Consensus 246 ~~vM~s~~~~~g~pa~~s~~~ 266 (557)
-+||++.=.=.|+||.++++.
T Consensus 34 i~vMSGnFvQRGEPAi~dKw~ 54 (388)
T PF05636_consen 34 IAVMSGNFVQRGEPAIIDKWT 54 (388)
T ss_dssp EEEE--TTSBTSSB-SS-HHH
T ss_pred EEEECCCcccCCCeeeCCHHH
Confidence 467777544478888888763
No 35
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=21.60 E-value=32 Score=22.58 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHhcCCHHHHHhcccc
Q 036635 7 KQPVEVRVKDLLSRMTLAEKIGQMTQ 32 (557)
Q Consensus 7 ~~~~~~~v~~ll~~mtl~ekvgql~~ 32 (557)
.+++++.|++|++.-|..+.+++|+.
T Consensus 2 ~lsv~~qV~~LI~~At~~~nLa~my~ 27 (33)
T PF02260_consen 2 PLSVEQQVDELISEATDPENLARMYI 27 (33)
T ss_dssp -S-STHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHhc
Confidence 46788999999999999999999874
No 36
>PLN03007 UDP-glucosyltransferase family protein
Probab=21.35 E-value=2.3e+02 Score=30.87 Aligned_cols=73 Identities=27% Similarity=0.359 Sum_probs=46.1
Q ss_pred CeEEEcchhhhhhhcCCCC------CChHHHHHHHHHcCCCeecCCCChHHHHHH--HHHH------H--------HcCC
Q 036635 278 KGFTISDWEGIDRITSPPH------SNYTYSVQESVLAGLDMIMVPYLYPEFINI--LTDL------V--------NKKV 335 (557)
Q Consensus 278 ~G~visD~~~m~~~~~~~~------~~~~~~~~~al~AG~D~~l~~~~~~~~~~~--l~~a------v--------~~g~ 335 (557)
+|+++.+|.-...+-.+.. +---.++..|+.+|+=|+++|.-.+....+ +.+. + +.+.
T Consensus 345 ~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~ 424 (482)
T PLN03007 345 KGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDF 424 (482)
T ss_pred CCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCc
Confidence 5889988876555533210 000236789999999999987644432221 2221 1 3356
Q ss_pred CCHHHHHHHHHHHHH
Q 036635 336 IPMRRINDAVKRILR 350 (557)
Q Consensus 336 i~~~~id~av~Ril~ 350 (557)
++.+.|.+++++++.
T Consensus 425 ~~~~~l~~av~~~m~ 439 (482)
T PLN03007 425 ISREKVEKAVREVIV 439 (482)
T ss_pred ccHHHHHHHHHHHhc
Confidence 899999999999973
No 37
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=21.31 E-value=1.2e+02 Score=33.12 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCC
Q 036635 117 RDPNLVKRIGAATALEVRATGI 138 (557)
Q Consensus 117 ~d~~l~~~~g~~~a~e~~a~Gi 138 (557)
.+|+.|++++..+|.-+|+.|-
T Consensus 195 ~sp~~A~evA~~IG~~lrsTGk 216 (631)
T COG2511 195 RSPEQAREVAERIGYILRSTGK 216 (631)
T ss_pred CCHHHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999864
No 38
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=21.10 E-value=8.6e+02 Score=24.49 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCCeecCCC
Q 036635 300 TYSVQESVLAGLDMIMVPY 318 (557)
Q Consensus 300 ~~~~~~al~AG~D~~l~~~ 318 (557)
.+.+.+.+.||+|.++++.
T Consensus 264 ~~da~~~l~aGA~~V~i~t 282 (299)
T cd02940 264 WEDAAEFLLLGASVVQVCT 282 (299)
T ss_pred HHHHHHHHHcCCChheEce
Confidence 4567889999999999864
No 39
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=20.85 E-value=1.9e+02 Score=29.25 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=13.7
Q ss_pred HHHHHHHHcCCCeecC
Q 036635 301 YSVQESVLAGLDMIMV 316 (557)
Q Consensus 301 ~~~~~al~AG~D~~l~ 316 (557)
+.+.+++.+|+|++|.
T Consensus 200 eqa~ea~~agaDiI~L 215 (284)
T PRK06096 200 KEAIAALRAQPDVLQL 215 (284)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 4568899999999996
No 40
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=20.81 E-value=1.4e+02 Score=25.61 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=25.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHcCCCe
Q 036635 113 LGATRDPNLVKRIGAATALEVRATGIPY 140 (557)
Q Consensus 113 laat~d~~l~~~~g~~~a~e~~a~Gin~ 140 (557)
++.+.|.+.|+.+|..+|+.+.+.||+-
T Consensus 54 ~~~~~n~~aA~~vG~lla~ra~~~gi~~ 81 (109)
T CHL00139 54 LSSTSTCDASKLVGQKLAKKSLKKGITK 81 (109)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHCCCCE
Confidence 5577899999999999999999999975
No 41
>PF15448 NTS_2: N-terminal segments of P. falciparum erythrocyte membrane protein
Probab=20.33 E-value=1.2e+02 Score=21.30 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHHHhcCCHHHHHhccccc
Q 036635 4 KDPKQPVEVRVKDLLSRMTLAEKIGQMTQI 33 (557)
Q Consensus 4 ~d~~~~~~~~v~~ll~~mtl~ekvgql~~~ 33 (557)
+|...++..+++..|..-|.+-||-|++-.
T Consensus 1 mdskstia~kieayl~~ks~ds~idq~lka 30 (51)
T PF15448_consen 1 MDSKSTIANKIEAYLEAKSNDSKIDQSLKA 30 (51)
T ss_pred CcchhhHHHHHHHHHHhhcchhhHHHHhcC
Confidence 366778899999999999999999998854
No 42
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.15 E-value=1.8e+02 Score=29.51 Aligned_cols=18 Identities=6% Similarity=0.239 Sum_probs=14.6
Q ss_pred HHHHHHHHcCCCeecCCC
Q 036635 301 YSVQESVLAGLDMIMVPY 318 (557)
Q Consensus 301 ~~~~~al~AG~D~~l~~~ 318 (557)
+.+..|+++|+|++|..+
T Consensus 216 eea~eA~~aGaDiImLDn 233 (294)
T PRK06978 216 AQLETALAHGAQSVLLDN 233 (294)
T ss_pred HHHHHHHHcCCCEEEECC
Confidence 346889999999999643
No 43
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=20.09 E-value=6.7e+02 Score=25.13 Aligned_cols=168 Identities=14% Similarity=0.183 Sum_probs=93.1
Q ss_pred CccccccccCCHHHHHHHHHHHHHHHHHcCCCeeeecccCcCCCCCC-CccccccCCCHHHHHHHH-H-HHhhccCCCCC
Q 036635 108 PHNVGLGATRDPNLVKRIGAATALEVRATGIPYAFAPCIAVCRDPRW-GRCYESYSEDAKLVQQFS-V-IISGLQGDAPS 184 (557)
Q Consensus 108 P~~~~laat~d~~l~~~~g~~~a~e~~a~Gin~~~aPv~Dv~~~p~~-gr~~rsfgeDp~~v~~~a-~-~v~G~q~~~~~ 184 (557)
+..+.+.. .|+... .-.-+++++.|| ||+.+.+++.. .-..-+.|.|.+..++++ . +.+.+.+
T Consensus 92 ~daIiv~~-~d~~~~----~~~v~~a~~aGI-----pVv~~d~~~~~~~~~~~~vg~dn~~~G~~~a~~l~~~~~~---- 157 (322)
T COG1879 92 VDAIIINP-VDPDAL----TPAVKKAKAAGI-----PVVTVDSDIPGPGDRVAYVGSDNYKAGRLAAEYLAKALGG---- 157 (322)
T ss_pred CCEEEEcC-CChhhh----HHHHHHHHHCCC-----cEEEEecCCCCCCceeEEEecCcHHHHHHHHHHHHHHhCC----
Confidence 44444433 555544 344457888887 45666665544 222456688999999996 4 6777763
Q ss_pred ccccCCCCccCCCCceeEeeccccCCCCCCCCCcCCCccCCHHHHHhhcCHHHHHHHhcccCeeeecccCcCCccccCCH
Q 036635 185 KQVKKGRPFVGGKDKVAACAKHYVGDGGTVNGINENNTIVTTEQLFDIHMPPYWSALDQRVSTVMISYSSINGKKMHANK 264 (557)
Q Consensus 185 ~~~~~g~~~~~g~~gV~a~~KHFpg~g~~~~~~~~~~~~~~~~~l~~~~l~pF~~~i~~g~~~vM~s~~~~~g~pa~~s~ 264 (557)
.|-+.++...||+.... .-..-|++.+++...-+.+.-......-.....
T Consensus 158 -------------~g~v~~~~g~~~~~~~~-----------------~R~~G~~~~l~~~~~~~~v~~~~~~~~~~~~a~ 207 (322)
T COG1879 158 -------------KGKVVVLVGSPGNSSAE-----------------ERVKGFRDALKEHPPDIEVVDVQTGDWDRDKAL 207 (322)
T ss_pred -------------CCeEEEEecCCCCchHH-----------------HHHhhHHHHHHhCCCcEEEeeccCCcccHHHHH
Confidence 24456666666654321 112456777776433122211111122244566
Q ss_pred HHHHHHHHhhcCCCeEEEc-chhhhhhhcCCCCCChHHHHHHHH-HcCC--CeecCCCChHHHHHHHHHHHHcCC
Q 036635 265 ELVTEYLKEKLKFKGFTIS-DWEGIDRITSPPHSNYTYSVQESV-LAGL--DMIMVPYLYPEFINILTDLVNKKV 335 (557)
Q Consensus 265 ~~l~~lLR~~lgf~G~vis-D~~~m~~~~~~~~~~~~~~~~~al-~AG~--D~~l~~~~~~~~~~~l~~av~~g~ 335 (557)
.+++++|...=..+|+... |.+.++++ +|+ .+|- ++..++.+.. ....+++++|.
T Consensus 208 ~~~~~~L~~~pdi~~i~~~~d~~a~ga~-------------~A~~~~g~~~~v~v~g~D~~---~~~~~~i~~G~ 266 (322)
T COG1879 208 EVMEDLLAANPDIDGIYAANDGMALGAI-------------QALKAAGRKGDVVVVGFDGT---PDALKALKDGK 266 (322)
T ss_pred HHHHHHHHhCCCceEEEECCchhHHHHH-------------HHHHHcCCCCceEEEEecCC---HHHHHHHHcCC
Confidence 7778888877677787665 66665542 233 3444 3555444432 24566666673
Done!