BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036636
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/368 (20%), Positives = 138/368 (37%), Gaps = 60/368 (16%)
Query: 15 LILDTGSALIYAIFDPR-KSSSFQKINCDHPDCTYFK--------------CVNEQC-VY 58
L++D G ++ D SS+++ + C C+ C N C V+
Sbjct: 37 LVVDLGGRFLWVDCDQNYVSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVF 96
Query: 59 TMKYADQSVTKGFAAHETISVI---GKGEGKAIFHGA-LFGCSNDNHGFDEDARDGALAG 114
+ T G A + +SV G G+ + +F C+ + ++ G + G
Sbjct: 97 PENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTS--LLQNLASGVV-G 153
Query: 115 VLGLSRVTISFISQLGSII--KKRFSYCLVIPLPNGEYTS-SYLKFGTDMGYRRP----- 166
+ GL R I+ SQ S K++F+ CL +G +S S + FG D P
Sbjct: 154 MAGLGRTRIALPSQFASAFSFKRKFAMCL-----SGSTSSNSVIIFGNDPYTFLPNIIVS 208
Query: 167 --------------STQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGC 212
ST AT P+ Y++ +K I I+++ + I+ +G GG
Sbjct: 209 DKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGT 268
Query: 213 IIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFN-----RF 267
I + + T + +Y + E F+ + +++ P C+ +
Sbjct: 269 KISTINPYTVLETSIYKAVTEAFIKESAARNITRVASV-APFGACFSTDNILSTRLGPSV 327
Query: 268 PSMAFYFEDANL--RIDGENVFIIDYENHFFLLAVAPHDDLVA--LIGSQQQRDTRFVYD 323
PS+ + ++ I G N + +N L V +L +IG Q D +D
Sbjct: 328 PSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFD 387
Query: 324 LNIDLLSF 331
L + F
Sbjct: 388 LATSRVGF 395
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/368 (20%), Positives = 138/368 (37%), Gaps = 60/368 (16%)
Query: 15 LILDTGSALIYAIFDPR-KSSSFQKINCDHPDCTYFK--------------CVNEQC-VY 58
L++D G ++ D SS+++ + C C+ C N C V+
Sbjct: 37 LVVDLGGRFLWVDCDQNYVSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVF 96
Query: 59 TMKYADQSVTKGFAAHETISVI---GKGEGKAIFHGA-LFGCSNDNHGFDEDARDGALAG 114
+ T G A + +SV G G+ + +F C+ + ++ G + G
Sbjct: 97 PENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTS--LLQNLASGVV-G 153
Query: 115 VLGLSRVTISFISQLGSII--KKRFSYCLVIPLPNGEYTS-SYLKFGTDMGYRRP----- 166
+ GL R I+ SQ S K++F+ CL +G +S S + FG D P
Sbjct: 154 MAGLGRTRIALPSQFASAFSFKRKFAMCL-----SGSTSSNSVIIFGNDPYTFLPNIIVS 208
Query: 167 --------------STQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGC 212
ST AT P+ Y++ +K I I+++ + I+ +G GG
Sbjct: 209 DKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGT 268
Query: 213 IIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFN-----RF 267
I + + T + +Y + E F+ + +++ P C+ +
Sbjct: 269 KISTINPYTVLETSIYKAVTEAFIKESAARNITRVASV-APFGACFSTDNILSTRLGPSV 327
Query: 268 PSMAFYFEDANL--RIDGENVFIIDYENHFFLLAVAPHDDLVA--LIGSQQQRDTRFVYD 323
PS+ + ++ I G N + +N L V +L +IG Q D +D
Sbjct: 328 PSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFD 387
Query: 324 LNIDLLSF 331
L + F
Sbjct: 388 LATSRVGF 395
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 70/366 (19%), Positives = 140/366 (38%), Gaps = 74/366 (20%)
Query: 3 RLFIGTPSKGVLLILDTGSALIYAI-----------------FDPRKSSSFQKINCDHPD 45
++ +G+ + +I+DTGS+ + + F P SSS++ +
Sbjct: 17 KVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGA---- 72
Query: 46 CTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVIG---KGEGKA------IFHGAL-FG 95
+T++Y D S ++G +T+++ G G+ A + G L G
Sbjct: 73 -----------AFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQTSVDQGILGIG 121
Query: 96 CSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCLVIPLPNGEYTSSYL 155
+++ +D R V ++ Q G I + +Y L + P+ E T + +
Sbjct: 122 YTSNEAVYDTSGRQT----TPNYDNVPVTLKKQ-GKI--RTNAYSLYLNSPSAE-TGTII 173
Query: 156 KFGTDMGYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIID 215
G D A + + + +SL +++ +F G ++D
Sbjct: 174 FGGVDNAKYSGKLVAEQVTS--SQALTISLASVNLKGSSFSFGD-----------GALLD 220
Query: 216 SGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFE 275
SG+ LTYF SD +L +K +L Q++ Q YF+ + + F F
Sbjct: 221 SGTTLTYFPSDFAAQLADK-----AGARLVQVA----RDQYLYFIDCNTDTSGTTVFNFG 271
Query: 276 DANLRIDGENVFIIDYENHFFLLAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFVKEN 335
+ ++ + L + P DD + +G R +Y+L+ + +S +
Sbjct: 272 NGAKITVPNTEYVYQNGDGTCLWGIQPSDDTI--LGDNFLRHAYLLYNLDANTISIAQVK 329
Query: 336 CSDDSA 341
+ DS+
Sbjct: 330 YTTDSS 335
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 14/51 (27%)
Query: 3 RLFIGTPSKGVLLILDTGSALIYAI--------------FDPRKSSSFQKI 39
+++IGTP + ++ DTGS+ ++ FDPRKSS+F+ +
Sbjct: 16 KIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNL 66
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 14/51 (27%)
Query: 3 RLFIGTPSKGVLLILDTGSALIYAI--------------FDPRKSSSFQKI 39
++++GTP + ++ DTGS+ + FDPRKSS+FQ +
Sbjct: 19 KIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 14/51 (27%)
Query: 3 RLFIGTPSKGVLLILDTGSALIYAI--------------FDPRKSSSFQKI 39
++++GTP + ++ DTGS+ + FDPRKSS+FQ +
Sbjct: 19 KIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 97/236 (41%), Gaps = 56/236 (23%)
Query: 6 IGTPSKGVLLILDTGSALIY--AIF-DPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKY 62
IGTP++ +I DTGS+ ++ +++ S + N D D + F+ +++ ++ Y
Sbjct: 64 IGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPD--DSSTFEATSQEL--SITY 119
Query: 63 ADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHG-------FDEDARDGALAGV 115
S+T G ++T+ V G + I FG S G FD G+
Sbjct: 120 GTGSMT-GILGYDTVQVGGISDTNQI-----FGLSETEPGSFLYYAPFD---------GI 164
Query: 116 LGLSRVTISF---------ISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRP 166
LGL+ +IS + G + + FS L N + S L G D Y
Sbjct: 165 LGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS---SNDDSGSVVLLGGIDSSYYTG 221
Query: 167 STQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGC--IIDSGSVL 220
S ++ ++L I++D E T++ GGC I+D+G+ L
Sbjct: 222 SLNWVPV--SVEGYWQITLDSITMDGE-----------TIACSGGCQAIVDTGTSL 264
>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
Length = 409
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 218 SVLTYFHSDVYWKLHEKFVSYFERFQ 243
V+ Y HS W+L E F SY++R Q
Sbjct: 71 EVVYYSHSAGIWELREAFASYYKRRQ 96
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 97/236 (41%), Gaps = 56/236 (23%)
Query: 6 IGTPSKGVLLILDTGSALIY--AIF-DPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKY 62
IGTP++ +I DTGS+ ++ +++ S + N D D + F+ +++ ++ Y
Sbjct: 20 IGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPD--DSSTFEATSQEL--SITY 75
Query: 63 ADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHG-------FDEDARDGALAGV 115
S+T G ++T+ V G + I FG S G FD G+
Sbjct: 76 GTGSMT-GILGYDTVQVGGISDTNQI-----FGLSETEPGSFLYYAPFD---------GI 120
Query: 116 LGLSRVTISF---------ISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRP 166
LGL+ +IS + G + + FS L N + S L G D Y
Sbjct: 121 LGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS---SNDDSGSVVLLGGIDSSYYTG 177
Query: 167 STQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGC--IIDSGSVL 220
S ++ ++L I++D E T++ GGC I+D+G+ L
Sbjct: 178 SLNWVPV--SVEGYWQITLDSITMDGE-----------TIACSGGCQAIVDTGTSL 220
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 15/54 (27%)
Query: 2 VRLFIGTPSKGVLLILDTGSALIYA---------------IFDPRKSSSFQKIN 40
+ + IGTP + LL+ DTGS+ + FDP SS+F+ N
Sbjct: 22 IPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRFFDPSASSTFKATN 75
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 97/236 (41%), Gaps = 56/236 (23%)
Query: 6 IGTPSKGVLLILDTGSALIY--AIF-DPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKY 62
IGTP++ +I DTGS+ ++ +++ S + N D D + F+ +++ ++ Y
Sbjct: 20 IGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPD--DSSTFEATSQEL--SITY 75
Query: 63 ADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHG-------FDEDARDGALAGV 115
S+T G ++T+ V G + I FG S G FD G+
Sbjct: 76 GTGSMT-GILGYDTVQVGGISDTNQI-----FGLSETEPGSFLYYAPFD---------GI 120
Query: 116 LGLSRVTISF---------ISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRP 166
LGL+ +IS + G + + FS L N + S L G D Y
Sbjct: 121 LGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS---SNDDSGSVVLLGGIDSSYYTG 177
Query: 167 STQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGC--IIDSGSVL 220
S ++ ++L I++D E T++ GGC I+D+G+ L
Sbjct: 178 SLNWVPV--SVEGYWQITLDSITMDGE-----------TIACSGGCQAIVDTGTSL 220
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 97/236 (41%), Gaps = 56/236 (23%)
Query: 6 IGTPSKGVLLILDTGSALIY--AIF-DPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKY 62
IGTP++ +I DTGS+ ++ +++ S + N D D + F+ +++ ++ Y
Sbjct: 20 IGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPD--DSSTFEATSQEL--SITY 75
Query: 63 ADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHG-------FDEDARDGALAGV 115
S+T G ++T+ V G + I FG S G FD G+
Sbjct: 76 GTGSMT-GILGYDTVQVGGISDTNQI-----FGLSETEPGSFLYYAPFD---------GI 120
Query: 116 LGLSRVTISF---------ISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRP 166
LGL+ +IS + G + + FS L N + S L G D Y
Sbjct: 121 LGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS---SNDDSGSVVLLGGIDSSYYTG 177
Query: 167 STQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGC--IIDSGSVL 220
S ++ ++L I++D E T++ GGC I+D+G+ L
Sbjct: 178 SLNWVPV--SVEGYWQITLDSITMDGE-----------TIACSGGCQAIVDTGTSL 220
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 56/236 (23%)
Query: 6 IGTPSKGVLLILDTGSALIY--AIF-DPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKY 62
IGTP++ +I DTGS+ ++ +++ S + N D D + F+ ++ ++ Y
Sbjct: 64 IGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPD--DSSTFEATXQEL--SITY 119
Query: 63 ADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHG-------FDEDARDGALAGV 115
S+T G ++T+ V G + I FG S G FD G+
Sbjct: 120 GTGSMT-GILGYDTVQVGGISDTNQI-----FGLSETEPGSFLYYAPFD---------GI 164
Query: 116 LGLSRVTISF---------ISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRP 166
LGL+ +IS + G + + FS L N + S L G D Y
Sbjct: 165 LGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS---SNDDSGSVVLLGGIDSSYYTG 221
Query: 167 STQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGC--IIDSGSVL 220
S ++ ++L I++D E T++ GGC I+D+G+ L
Sbjct: 222 SLNWVPV--SVEGYWQITLDSITMDGE-----------TIACSGGCQAIVDTGTSL 264
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 56/236 (23%)
Query: 6 IGTPSKGVLLILDTGSALIY--AIF-DPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKY 62
IGTP++ +I DTGS+ ++ +++ S + N D D + F+ ++ ++ Y
Sbjct: 20 IGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPD--DSSTFEATXQEL--SITY 75
Query: 63 ADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHG-------FDEDARDGALAGV 115
S+T G ++T+ V G + I FG S G FD G+
Sbjct: 76 GTGSMT-GILGYDTVQVGGISDTNQI-----FGLSETEPGSFLYYAPFD---------GI 120
Query: 116 LGLSRVTISF---------ISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRP 166
LGL+ +IS + G + + FS L N + S L G D Y
Sbjct: 121 LGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS---SNDDSGSVVLLGGIDSSYYTG 177
Query: 167 STQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGC--IIDSGSVL 220
S ++ ++L I++D E T++ GGC I+D+G+ L
Sbjct: 178 SLNWVPV--SVEGYWQITLDSITMDGE-----------TIACSGGCQAIVDTGTSL 220
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 56/236 (23%)
Query: 6 IGTPSKGVLLILDTGSALIY--AIF-DPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKY 62
IGTP++ +I DTGS+ ++ +++ S + N D D + F+ ++ ++ Y
Sbjct: 20 IGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPD--DSSTFEATXQEL--SITY 75
Query: 63 ADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHG-------FDEDARDGALAGV 115
S+T G ++T+ V G + I FG S G FD G+
Sbjct: 76 GTGSMT-GILGYDTVQVGGISDTNQI-----FGLSETEPGSFLYYAPFD---------GI 120
Query: 116 LGLSRVTISF---------ISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRP 166
LGL+ +IS + G + + FS L N + S L G D Y
Sbjct: 121 LGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS---SNDDSGSVVLLGGIDSSYYTG 177
Query: 167 STQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGC--IIDSGSVL 220
S ++ ++L I++D E T++ GGC I+D+G+ L
Sbjct: 178 SLNWVPV--SVEGYWQITLDSITMDGE-----------TIACSGGCQAIVDTGTSL 220
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 226 DVYWKLHEK--FVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDG 283
DVY L E F ER+ + ++D P+ ++LC+ +N +A+ NL+ G
Sbjct: 309 DVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLA--LYNTINEIAY----DNLKDKG 362
Query: 284 ENVF 287
EN+
Sbjct: 363 ENIL 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,846,939
Number of Sequences: 62578
Number of extensions: 472701
Number of successful extensions: 841
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 29
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)